BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048080
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
PP+L NC L+ L N LSGT+P L +++ L L+ N+L G P E+ +K L
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
+L + N +GEIP+ L CT+L +S+ +N TG IP + L+++ L LS N+ SG+
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 123 IP 124
IP
Sbjct: 527 IP 528
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%)
Query: 38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTG 97
+ LD+ N+LSG+ P E+G++ +L L++ N SG IP +G L L + N G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 98 SIPSTLSSLKSITELDLSRNNLSGHIPQ 125
IP +S+L +TE+DLS NNLSG IP+
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIIT-RSVLLDLFDNLLSGHFPAEVGNLKHL 61
P SLG+ L L N L G +P++L+ + T +++LD D L+G P+ + N +L
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND--LTGEIPSGLSNCTNL 489
Query: 62 VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
+ +S+N +GEIP +G +L L + +NSF+G+IP+ L +S+ LDL+ N +G
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 122 HIP 124
IP
Sbjct: 550 TIP 552
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Query: 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNL-KHL 61
PP G+C L L N SG +P L + +LDL N SG P + NL L
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 62 VSLDISSNMFSGEIPTTLGGC----TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117
++LD+SSN FSG I L C +L+ L +Q+N FTG IP TLS+ + L LS N
Sbjct: 368 LTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 118 NLSGHIPQYXXXXXXXXXXXXXXXXXEGKVPIEAIFNST 156
LSG IP EG++P E ++ T
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 78/215 (36%), Gaps = 47/215 (21%)
Query: 1 NRPPSLGNCQNLILLTTCKNKLSGTVP--------------------------------- 27
N P LG+C++LI L N +GT+P
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 28 -------------RQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE 74
QL R+ TR+ ++ + GH N ++ LD+S NM SG
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPC-NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 75 IPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYXXXXXXXX 134
IP +G L L++ N +GSIP + L+ + LDLS N L G IPQ
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 135 XXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCG 169
G +P F + + N LCG
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFD---NLLSGHFPAEVGNLKHLVSLD 65
C L L NK+SG V ++R V L+ D N S P +G+ L LD
Sbjct: 174 CGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 226
Query: 66 ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 125
IS N SG+ + CT L+ L++ N F G IP LKS+ L L+ N +G IP
Sbjct: 227 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 284
Query: 126 Y 126
+
Sbjct: 285 F 285
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVS 63
++ C L LL N+ G +P L+ + L L +N +G P + G L
Sbjct: 239 AISTCTELKLLNISSNQFVGPIPPLPLKSLQY---LSLAENKFTGEIPDFLSGACDTLTG 295
Query: 64 LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGH 122
LD+S N F G +P G C+ LE L++ N+F+G +P TL ++ + LDLS N SG
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 123 IPQ 125
+P+
Sbjct: 356 LPE 358
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 51 FPAEV-GNLK--HLVSLDISSNMFSGE--IPTTLG-GCTSLEHLSMQDNSFTGSIPSTLS 104
FP +V G LK L LD+S+N SG + L GC L+HL++ N +G + +S
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 194
Query: 105 SLKSITELDLSRNNLSGHIP 124
++ LD+S NN S IP
Sbjct: 195 RCVNLEFLDVSSNNFSTGIP 214
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
PP+L NC L+ L N LSGT+P L +++ L L+ N+L G P E+ +K L
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122
+L + N +GEIP+ L CT+L +S+ +N TG IP + L+++ L LS N+ SG+
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 123 IP 124
IP
Sbjct: 530 IP 531
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%)
Query: 38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTG 97
+ LD+ N+LSG+ P E+G++ +L L++ N SG IP +G L L + N G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 98 SIPSTLSSLKSITELDLSRNNLSGHIPQ 125
IP +S+L +TE+DLS NNLSG IP+
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIIT-RSVLLDLFDNLLSGHFPAEVGNLKHL 61
P SLG+ L L N L G +P++L+ + T +++LD D L+G P+ + N +L
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND--LTGEIPSGLSNCTNL 492
Query: 62 VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
+ +S+N +GEIP +G +L L + +NSF+G+IP+ L +S+ LDL+ N +G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 122 HIP 124
IP
Sbjct: 553 TIP 555
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Query: 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNL-KHL 61
PP G+C L L N SG +P L + +LDL N SG P + NL L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 62 VSLDISSNMFSGEIPTTLGGC----TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117
++LD+SSN FSG I L C +L+ L +Q+N FTG IP TLS+ + L LS N
Sbjct: 371 LTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 118 NLSGHIPQYXXXXXXXXXXXXXXXXXEGKVPIEAIFNST 156
LSG IP EG++P E ++ T
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 78/215 (36%), Gaps = 47/215 (21%)
Query: 1 NRPPSLGNCQNLILLTTCKNKLSGTVP--------------------------------- 27
N P LG+C++LI L N +GT+P
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 28 -------------RQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE 74
QL R+ TR+ ++ + GH N ++ LD+S NM SG
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPC-NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 75 IPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYXXXXXXXX 134
IP +G L L++ N +GSIP + L+ + LDLS N L G IPQ
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 135 XXXXXXXXXEGKVPIEAIFNSTKGISLVGNENLCG 169
G +P F + + N LCG
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFD---NLLSGHFPAEVGNLKHLVSLD 65
C L L NK+SG V ++R V L+ D N S P +G+ L LD
Sbjct: 177 CGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229
Query: 66 ISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQ 125
IS N SG+ + CT L+ L++ N F G IP LKS+ L L+ N +G IP
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 287
Query: 126 Y 126
+
Sbjct: 288 F 288
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-GNLKHLVS 63
++ C L LL N+ G +P L+ + L L +N +G P + G L
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLPLKSLQY---LSLAENKFTGEIPDFLSGACDTLTG 298
Query: 64 LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGH 122
LD+S N F G +P G C+ LE L++ N+F+G +P TL ++ + LDLS N SG
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 123 IPQ 125
+P+
Sbjct: 359 LPE 361
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 51 FPAEV-GNLK--HLVSLDISSNMFSGE--IPTTLG-GCTSLEHLSMQDNSFTGSIPSTLS 104
FP +V G LK L LD+S+N SG + L GC L+HL++ N +G + +S
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 197
Query: 105 SLKSITELDLSRNNLSGHIP 124
++ LD+S NN S IP
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP 217
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 3 PPSLGNCQNL-ILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHL 61
P SL N L L N L G +P + ++ L N+ SG P + +K L
Sbjct: 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTL 127
Query: 62 VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSL-KSITELDLSRNNLS 120
V+LD S N SG +P ++ +L ++ N +G+IP + S K T + +SRN L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 121 GHIP 124
G IP
Sbjct: 188 GKIP 191
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 24/146 (16%)
Query: 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLV 62
PPS+ + NL+ +T N++SG +P + + N L+G P NL +L
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLA 200
Query: 63 SLDISSNMFSGEIPTTLGG-----------------------CTSLEHLSMQDNSFTGSI 99
+D+S NM G+ G +L L +++N G++
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260
Query: 100 PSTLSSLKSITELDLSRNNLSGHIPQ 125
P L+ LK + L++S NNL G IPQ
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 75 IPTTLGGCTSLEHLSMQD-NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY 126
IP++L L L + N+ G IP ++ L + L ++ N+SG IP +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISS 68
C L + C NK +P+ + R +T L D P E+ N KHL +D+S+
Sbjct: 8 CTCLDTVVRCSNKGLKVLPKGIPRDVTELYL----DGNQFTLVPKELSNYKHLTLIDLSN 63
Query: 69 NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
N S + T L L + N P T LKS+ L L N++S
Sbjct: 64 NRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 39 LLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS 98
L+DL +N +S N+ L++L +S N P T G SL LS+ N +
Sbjct: 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117
Query: 99 IPSTLSSLKSITELDLSRNNL 119
+ L +++ L + N L
Sbjct: 118 PEGAFNDLSALSHLAIGANPL 138
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 52 PAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITE 111
PAE+ NL +L LD+S N + +P LG C L++ DN T ++P +L ++
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF 320
Query: 112 LDLSRNNL 119
L + N L
Sbjct: 321 LGVEGNPL 328
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 58 LKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS-IPSTLSSLKSITELDLSR 116
L++L+ LDIS G +SLE L M NSF + +P + L+++T LDLS+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 117 NNLSGHIP 124
L P
Sbjct: 480 CQLEQLSP 487
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 58 LKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS-IPSTLSSLKSITELDLSR 116
L++L+ LDIS G +SLE L M NSF + +P + L+++T LDLS+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 117 NNLSGHIP 124
L P
Sbjct: 480 CQLEQLSP 487
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 52 PAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITE 111
P L++L LD+S PT +SL+ L+M N+F L S+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 112 LDLSRNNL 119
LD S N++
Sbjct: 523 LDYSLNHI 530
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 58 LKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS-IPSTLSSLKSITELDLSR 116
L++L+ LDIS G +SLE L M NSF + +P + L+++T LDLS+
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 117 NNLSGHIP 124
L P
Sbjct: 504 CQLEQLSP 511
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 52 PAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITE 111
P L++L LD+S PT +SL+ L+M N+F L S+
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 112 LDLSRNNL 119
LD S N++
Sbjct: 547 LDYSLNHI 554
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 58 LKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGS-IPSTLSSLKSITELDLSR 116
L++L+ LDIS G +SLE L M NSF + +P + L+++T LDLS+
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 117 NNLSGHIP 124
L P
Sbjct: 185 CQLEQLSP 192
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 52 PAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITE 111
P L++L LD+S PT +SL+ L+M N+F L S+
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 112 LDLSRNNL 119
LD S N++
Sbjct: 228 LDYSLNHI 235
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 18 CKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT 77
C K +VP I T + +L L+DN ++ P L L LD+ +N +
Sbjct: 24 CSGKSLASVPTG---IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 80
Query: 78 TLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRN 117
T L LS+ DN SIP +LKS+T + L N
Sbjct: 81 VFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 120
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 53 AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112
A++ NL+ L++ ++N S P LG T+L+ LS+ N TL+SL ++T+L
Sbjct: 191 AKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 243
Query: 113 DLSRNNLSGHIP 124
DL+ N +S P
Sbjct: 244 DLANNQISNLAP 255
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 53 AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112
A++ NL+ L++ ++N S P LG T+L+ LS+ N TL+SL ++T+L
Sbjct: 192 AKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 244
Query: 113 DLSRNNLSGHIP 124
DL+ N +S P
Sbjct: 245 DLANNQISNLAP 256
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 53 AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112
A++ NL+ L++ ++N S P LG T+L+ LS+ N TL+SL ++T+L
Sbjct: 192 AKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 244
Query: 113 DLSRNNLSGHIP 124
DL+ N +S P
Sbjct: 245 DLANNQISNLAP 256
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 53 AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112
A++ NL+ L++ ++N S P LG T+L+ LS+ N TL+SL ++T+L
Sbjct: 192 AKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 244
Query: 113 DLSRNNLSGHIP 124
DL+ N +S P
Sbjct: 245 DLANNQISNLAP 256
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 53 AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112
A++ NL+ L++ ++N S P LG T+L+ LS+ N TL+SL ++T+L
Sbjct: 191 AKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 243
Query: 113 DLSRNNLSGHIP 124
DL+ N +S P
Sbjct: 244 DLANNQISNLAP 255
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 53 AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112
A++ NL+ L++ ++N S P LG T+L+ LS+ N TL+SL ++T+L
Sbjct: 196 AKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 248
Query: 113 DLSRNNLSGHIP 124
DL+ N +S P
Sbjct: 249 DLANNQISNLAP 260
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 36 RSVLLDLFDNLLSGHFPAEVGNLKHLV---------SLDISSNMFSGEIPTTLGGCTSLE 86
+S + ++F N+ +F + H++ LD S+N+ + + G T LE
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351
Query: 87 HLSMQDNSFT--GSIPSTLSSLKSITELDLSRNNLS 120
L +Q N I + +KS+ +LD+S+N++S
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 7 GNC---QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
G+C ++L+ L N L+ T+ R L R +LDL N + P +V L+ L
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIKS-IPKQVVKLEALQE 448
Query: 64 LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP 100
L+++SN TSL+ + + N + S P
Sbjct: 449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 18 CKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT 77
C K +VP I T + +L L+DN ++ P L L LD+ +N +
Sbjct: 16 CSGKSLASVPTG---IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 72
Query: 78 TLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRN 117
T L LS+ DN SIP +LKS+T + L N
Sbjct: 73 VFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 53 AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112
A++ NL+ L++ ++N S P LG T+L+ LS+ N TL+SL ++T+L
Sbjct: 195 AKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 247
Query: 113 DLSRNNLSGHIP 124
DL+ N +S P
Sbjct: 248 DLANNQISNLAP 259
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 18 CKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT 77
C K VP I T + LLDL N + E + HL L+++ N+ S P
Sbjct: 18 CHRKRFVAVPEG---IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG 74
Query: 78 TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL 119
+L L ++ N + L ++T+LD+S N +
Sbjct: 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN 69
+++++L N L+G+V R L + +LDL +N + P +V +L+ L L+++SN
Sbjct: 428 ESILVLNLSSNMLTGSVFRCL---PPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASN 483
Query: 70 MFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP 100
TSL+++ + DN + + P
Sbjct: 484 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 18 CKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT 77
C K +VP I T + +L L+DN ++ P L L LD+ +N +
Sbjct: 16 CSGKSLASVPTG---IPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 72
Query: 78 TLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRN 117
T L LS+ DN SIP +L+S+T + L N
Sbjct: 73 VFDKLTQLTQLSLNDNQL-KSIPRGAFDNLRSLTHIWLLNN 112
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTG 97
V L+L N L+G P H+ L + N G L+ L++ DN +
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116
Query: 98 SIPSTLSSLKSITELDLSRN--NLSGHIPQY 126
+P + L S+T L+L+ N N + H+ +
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 83 TSLEHLSMQDNSFTGSIPSTLSSLK--SITELDLSRNNL 119
TS+++LS+ +N + ST S LK ++T+LDLS NNL
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL 260
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Query: 11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNM 70
N+ +L N+L P R ++ +LD N +S P L L L++ N
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRY-SQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 71 FSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG 121
S T CT+L L + NS + + K++ +LDLS N LS
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 54 EVGNLKHLV---SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSIT 110
++ NL LV L++S N P + G TSL L + + LKS+
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 111 ELDLSRNNL 119
EL+LS NNL
Sbjct: 230 ELNLSHNNL 238
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 4/123 (3%)
Query: 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
P+ +C N C + VP I + L+L +N + +L+HL
Sbjct: 7 PAACSCSNQASRVICTRRELAEVPAS---IPVNTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 64 LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
L +S N+ G SL L + DN T L + EL L RNN I
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL-RNNPIESI 122
Query: 124 PQY 126
P Y
Sbjct: 123 PSY 125
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 54 EVGNLKHLV---SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSIT 110
++ NL LV L++S N P + G TSL L + + LKS+
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 111 ELDLSRNNL 119
EL+LS NNL
Sbjct: 230 ELNLSHNNL 238
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 4/123 (3%)
Query: 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63
P+ +C N C + VP I + L+L +N + +L+HL
Sbjct: 7 PAACSCSNQASRVICTRRELAEVPAS---IPVNTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 64 LDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123
L +S N+ G SL L + DN T L + EL L RNN I
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL-RNNPIESI 122
Query: 124 PQY 126
P Y
Sbjct: 123 PSY 125
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
SLD+S+N + + L C +L+ L + N + SSL S+ LDLS N LS
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 58 LKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQD---NSFTGSIPSTLSSLK------- 107
LK+L ++DIS N F +P T +++L++ +S TG IP TL L
Sbjct: 386 LKNLTNIDISKNSFHS-MPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLN 444
Query: 108 -------SITELDLSRNNL 119
+ EL +SRN L
Sbjct: 445 LFSLNLPQLKELYISRNKL 463
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 63 SLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
SLD+S+N + + L C +L+ L + N + SSL S+ LDLS N LS
Sbjct: 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISS 68
CQ + + C + VP+ L + LLDL +N ++ + NLK+L +L + +
Sbjct: 29 CQCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 69 NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
N S P LE L + N +P + K++ EL + N ++
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT 134
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISS 68
CQ + + C + VP+ L + LLDL +N ++ + NLK+L +L + +
Sbjct: 29 CQCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 69 NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120
N S P LE L + N +P + K++ EL + N ++
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT 134
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 18 CKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT 77
C+ + +VP I T + +L L+ N ++ P +L L L+++ N +
Sbjct: 26 CQERSLASVPA---GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVG 82
Query: 78 TLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRN 117
T L HL++ N SIP +LKS+T + L N
Sbjct: 83 VFDKLTKLTHLALHINQL-KSIPMGVFDNLKSLTHIYLFNN 122
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 57 NLKHLVSLDISSNMFSGEI---PTTLGGCTSLEHLSMQDNSF-----TGSIPSTLSSLKS 108
+LK L LD+S N+ E G SL+ L + N TG I L +LK+
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI---LLTLKN 414
Query: 109 ITELDLSRNNL 119
+T LD+SRN
Sbjct: 415 LTSLDISRNTF 425
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 57 NLKHLVSLDISSNMFSGEI---PTTLGGCTSLEHLSMQDNSF-----TGSIPSTLSSLKS 108
+LK L LD+S N+ E G SL+ L + N TG I L +LK+
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI---LLTLKN 388
Query: 109 ITELDLSRNNL 119
+T LD+SRN
Sbjct: 389 LTSLDISRNTF 399
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 24 GTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT 83
G +P + +T+ +LDL N L+ A L HL L + N + E+P + T
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135
Query: 84 SLEHLSMQDNSFTGSIP 100
L HL++ N SIP
Sbjct: 136 HLTHLALDQNQLK-SIP 151
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Query: 11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNM 70
NL L +N+L ++P + +T L L+ N L L +L LD+ +N
Sbjct: 110 NLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ 168
Query: 71 FSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117
T L+ LS+ DN L S+T + L N
Sbjct: 169 LQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%)
Query: 40 LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
LD+ N +S P L L L++ N S T CT+L L + NS
Sbjct: 54 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113
Query: 100 PSTLSSLKSITELDLSRNNLSG 121
+ K++ LDLS N LS
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSS 135
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%)
Query: 40 LDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI 99
LD+ N +S P L L L++ N S T CT+L L + NS
Sbjct: 59 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 118
Query: 100 PSTLSSLKSITELDLSRNNLSG 121
+ K++ LDLS N LS
Sbjct: 119 NNPFVKQKNLITLDLSHNGLSS 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,941,969
Number of Sequences: 62578
Number of extensions: 151281
Number of successful extensions: 404
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 136
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)