Query 048080
Match_columns 223
No_of_seqs 301 out of 2306
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 7.6E-26 1.6E-30 208.9 15.6 162 7-170 449-610 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.3E-21 2.8E-26 180.9 13.9 165 3-169 421-586 (968)
3 KOG4194 Membrane glycoprotein 99.8 2.1E-22 4.6E-27 168.4 -3.0 169 5-174 288-459 (873)
4 KOG4237 Extracellular matrix p 99.8 2.7E-20 5.8E-25 149.4 0.7 94 79-172 270-364 (498)
5 PLN03150 hypothetical protein; 99.8 2.8E-18 6E-23 151.2 11.4 111 61-171 420-532 (623)
6 KOG0617 Ras suppressor protein 99.8 2E-20 4.4E-25 135.1 -3.7 143 2-149 48-191 (264)
7 KOG4194 Membrane glycoprotein 99.7 1.3E-18 2.9E-23 145.9 3.7 141 5-146 192-332 (873)
8 KOG0444 Cytoskeletal regulator 99.7 3.7E-18 8.1E-23 144.6 1.2 161 2-166 95-280 (1255)
9 KOG0617 Ras suppressor protein 99.7 9.9E-19 2.1E-23 126.4 -2.6 156 6-166 29-185 (264)
10 PLN03150 hypothetical protein; 99.7 1E-15 2.3E-20 135.0 11.8 112 37-148 420-532 (623)
11 KOG0618 Serine/threonine phosp 99.6 1.3E-16 2.9E-21 139.8 -0.8 162 1-166 301-488 (1081)
12 KOG0444 Cytoskeletal regulator 99.6 7.2E-17 1.6E-21 137.0 -2.4 166 1-171 213-379 (1255)
13 KOG0472 Leucine-rich repeat pr 99.6 3.8E-17 8.3E-22 131.9 -4.6 159 1-166 128-309 (565)
14 KOG4237 Extracellular matrix p 99.6 1E-16 2.3E-21 129.0 -2.2 157 16-176 52-210 (498)
15 KOG0472 Leucine-rich repeat pr 99.5 6.5E-16 1.4E-20 124.9 -4.2 152 12-167 390-541 (565)
16 PF14580 LRR_9: Leucine-rich r 99.4 7.1E-14 1.5E-18 103.6 4.3 104 37-145 21-127 (175)
17 KOG0532 Leucine-rich repeat (L 99.4 2.1E-14 4.5E-19 120.6 -0.8 137 1-145 112-248 (722)
18 PF14580 LRR_9: Leucine-rich r 99.4 4.2E-13 9E-18 99.5 4.6 127 7-138 16-147 (175)
19 cd00116 LRR_RI Leucine-rich re 99.4 9.6E-14 2.1E-18 113.1 1.0 162 4-165 75-261 (319)
20 PLN03210 Resistant to P. syrin 99.3 7.3E-12 1.6E-16 117.9 11.8 157 4-164 552-714 (1153)
21 PLN03210 Resistant to P. syrin 99.3 1.1E-11 2.3E-16 116.8 12.7 157 3-163 627-834 (1153)
22 KOG0618 Serine/threonine phosp 99.3 5.6E-14 1.2E-18 123.6 -2.3 104 61-166 361-464 (1081)
23 PRK15370 E3 ubiquitin-protein 99.3 4.5E-12 9.8E-17 113.3 8.7 35 10-48 220-254 (754)
24 PRK15370 E3 ubiquitin-protein 99.3 4.9E-12 1.1E-16 113.1 8.6 147 2-166 193-358 (754)
25 cd00116 LRR_RI Leucine-rich re 99.3 4.5E-13 9.8E-18 109.2 0.3 157 10-166 108-290 (319)
26 KOG0532 Leucine-rich repeat (L 99.3 8.1E-14 1.8E-18 117.1 -4.2 160 1-168 89-248 (722)
27 PRK15387 E3 ubiquitin-protein 99.3 9.7E-12 2.1E-16 111.0 7.8 80 60-148 383-462 (788)
28 PF13855 LRR_8: Leucine rich r 99.3 5.2E-12 1.1E-16 77.7 3.7 56 62-117 4-59 (61)
29 PRK15387 E3 ubiquitin-protein 99.3 2.7E-11 5.9E-16 108.2 9.4 76 84-168 383-459 (788)
30 KOG1259 Nischarin, modulator o 99.3 7.4E-13 1.6E-17 104.0 -0.4 133 9-148 283-416 (490)
31 PF13855 LRR_8: Leucine rich r 99.2 8.8E-12 1.9E-16 76.6 3.8 61 83-143 1-61 (61)
32 COG4886 Leucine-rich repeat (L 99.1 1E-10 2.2E-15 98.3 3.8 18 127-144 251-268 (394)
33 KOG1259 Nischarin, modulator o 99.1 2.1E-11 4.6E-16 95.9 -0.4 125 37-167 286-412 (490)
34 COG4886 Leucine-rich repeat (L 99.0 2.7E-10 5.9E-15 95.8 4.3 139 3-148 156-294 (394)
35 KOG1859 Leucine-rich repeat pr 99.0 1.5E-11 3.3E-16 106.4 -4.8 160 3-170 102-295 (1096)
36 KOG3207 Beta-tubulin folding c 98.9 4.1E-10 8.9E-15 92.4 0.4 87 58-144 221-314 (505)
37 KOG1859 Leucine-rich repeat pr 98.7 1.3E-10 2.9E-15 100.6 -6.6 129 11-146 165-294 (1096)
38 KOG4579 Leucine-rich repeat (L 98.7 6.9E-10 1.5E-14 77.8 -3.2 80 38-120 56-136 (177)
39 KOG3207 Beta-tubulin folding c 98.6 6.1E-09 1.3E-13 85.6 -0.1 159 7-166 143-313 (505)
40 KOG0531 Protein phosphatase 1, 98.6 1.2E-08 2.6E-13 86.5 -0.1 104 35-143 95-198 (414)
41 KOG1644 U2-associated snRNP A' 98.5 2E-07 4.4E-12 69.6 5.4 126 12-141 21-150 (233)
42 KOG0531 Protein phosphatase 1, 98.5 1.6E-08 3.5E-13 85.7 -0.6 109 6-121 91-200 (414)
43 PF13306 LRR_5: Leucine rich r 98.5 6.2E-07 1.4E-11 63.2 7.2 123 4-133 6-128 (129)
44 KOG4579 Leucine-rich repeat (L 98.4 7.2E-09 1.6E-13 72.8 -3.5 111 10-124 53-163 (177)
45 KOG4658 Apoptotic ATPase [Sign 98.4 1.7E-07 3.8E-12 85.6 3.8 107 10-118 545-653 (889)
46 KOG4658 Apoptotic ATPase [Sign 98.4 1.6E-07 3.4E-12 85.9 3.2 129 10-142 523-653 (889)
47 KOG1909 Ran GTPase-activating 98.4 8.2E-08 1.8E-12 77.0 0.5 141 4-144 86-254 (382)
48 PF12799 LRR_4: Leucine Rich r 98.3 8.1E-07 1.8E-11 50.4 3.0 15 128-142 21-35 (44)
49 KOG1644 U2-associated snRNP A' 98.2 2.6E-06 5.6E-11 63.8 5.3 105 38-145 22-127 (233)
50 PF12799 LRR_4: Leucine Rich r 98.2 2.1E-06 4.5E-11 48.7 3.6 39 83-122 1-39 (44)
51 KOG1909 Ran GTPase-activating 98.2 4.5E-07 9.8E-12 72.8 0.9 160 7-166 117-310 (382)
52 PF13306 LRR_5: Leucine rich r 98.0 3.2E-05 6.9E-10 54.4 7.0 111 25-140 2-112 (129)
53 PRK15386 type III secretion pr 98.0 2.5E-05 5.3E-10 65.4 7.0 117 8-141 50-187 (426)
54 KOG3665 ZYG-1-like serine/thre 97.8 9.4E-06 2E-10 72.7 2.1 135 10-146 122-265 (699)
55 COG5238 RNA1 Ran GTPase-activa 97.7 2.5E-05 5.4E-10 61.3 2.5 141 4-145 86-256 (388)
56 KOG3665 ZYG-1-like serine/thre 97.6 5E-05 1.1E-09 68.1 2.8 116 8-125 146-268 (699)
57 KOG2739 Leucine-rich acidic nu 97.5 7.8E-05 1.7E-09 58.0 2.9 60 59-120 43-104 (260)
58 KOG2982 Uncharacterized conser 97.4 9.4E-05 2E-09 58.9 2.8 85 10-95 71-158 (418)
59 KOG2120 SCF ubiquitin ligase, 97.4 3.9E-06 8.6E-11 66.5 -5.8 87 11-97 186-274 (419)
60 KOG2982 Uncharacterized conser 97.3 4.7E-05 1E-09 60.5 -0.0 88 32-119 68-158 (418)
61 KOG2739 Leucine-rich acidic nu 97.3 0.0001 2.3E-09 57.3 1.4 100 35-138 43-150 (260)
62 KOG2123 Uncharacterized conser 97.2 7.9E-06 1.7E-10 64.2 -5.2 99 10-113 19-123 (388)
63 PRK15386 type III secretion pr 97.2 0.0021 4.5E-08 54.1 7.9 116 34-164 51-187 (426)
64 KOG2120 SCF ubiquitin ligase, 96.9 5.9E-05 1.3E-09 60.0 -2.9 134 7-141 207-348 (419)
65 KOG2123 Uncharacterized conser 96.9 3.7E-05 7.9E-10 60.6 -4.4 100 34-137 18-123 (388)
66 PF00560 LRR_1: Leucine Rich R 96.5 0.0016 3.4E-08 30.8 1.2 18 109-127 2-19 (22)
67 smart00370 LRR Leucine-rich re 96.4 0.0033 7.1E-08 31.0 2.1 23 9-32 1-23 (26)
68 smart00369 LRR_TYP Leucine-ric 96.4 0.0033 7.1E-08 31.0 2.1 23 9-32 1-23 (26)
69 PF00560 LRR_1: Leucine Rich R 96.3 0.002 4.3E-08 30.5 0.9 19 85-104 2-20 (22)
70 PF15102 TMEM154: TMEM154 prot 95.9 0.01 2.3E-07 42.1 3.4 32 179-210 58-90 (146)
71 KOG0473 Leucine-rich repeat pr 95.6 0.00016 3.4E-09 55.7 -6.9 81 37-120 44-124 (326)
72 PF13504 LRR_7: Leucine rich r 95.5 0.0087 1.9E-07 26.3 1.2 17 10-27 1-17 (17)
73 COG5238 RNA1 Ran GTPase-activa 95.4 0.016 3.4E-07 46.0 3.1 110 35-145 92-228 (388)
74 KOG0473 Leucine-rich repeat pr 95.2 0.00039 8.4E-09 53.6 -6.1 89 53-144 36-124 (326)
75 PF08693 SKG6: Transmembrane a 95.1 0.011 2.4E-07 32.2 1.1 12 180-191 15-26 (40)
76 PF01102 Glycophorin_A: Glycop 95.1 0.019 4.2E-07 39.8 2.6 28 180-207 67-94 (122)
77 PF02439 Adeno_E3_CR2: Adenovi 94.9 0.05 1.1E-06 29.2 3.2 15 181-195 7-21 (38)
78 smart00369 LRR_TYP Leucine-ric 94.6 0.034 7.4E-07 27.2 2.1 16 107-122 2-17 (26)
79 smart00370 LRR Leucine-rich re 94.6 0.034 7.4E-07 27.2 2.1 16 107-122 2-17 (26)
80 TIGR00864 PCC polycystin catio 94.2 0.031 6.7E-07 56.6 2.5 39 113-151 1-39 (2740)
81 PF08374 Protocadherin: Protoc 94.0 0.07 1.5E-06 40.4 3.5 27 177-203 38-64 (221)
82 TIGR01478 STEVOR variant surfa 94.0 0.07 1.5E-06 42.2 3.6 29 184-212 265-293 (295)
83 PF04478 Mid2: Mid2 like cell 93.6 0.026 5.7E-07 40.4 0.6 31 177-207 49-79 (154)
84 PTZ00370 STEVOR; Provisional 93.1 0.075 1.6E-06 42.2 2.5 26 186-211 263-288 (296)
85 PF02009 Rifin_STEVOR: Rifin/s 92.9 0.068 1.5E-06 43.2 2.0 17 192-208 270-286 (299)
86 PF05454 DAG1: Dystroglycan (D 92.1 0.044 9.5E-07 44.0 0.0 27 183-209 152-178 (290)
87 PF05393 Hum_adeno_E3A: Human 91.7 0.29 6.3E-06 31.5 3.4 29 184-212 37-65 (94)
88 PF13516 LRR_6: Leucine Rich r 91.6 0.073 1.6E-06 25.4 0.5 14 108-121 3-16 (24)
89 PTZ00382 Variant-specific surf 91.3 0.11 2.3E-06 34.7 1.2 11 178-188 67-77 (96)
90 PF01299 Lamp: Lysosome-associ 91.2 0.14 3.1E-06 41.8 2.1 38 164-204 260-297 (306)
91 PTZ00046 rifin; Provisional 89.8 0.24 5.3E-06 40.8 2.3 18 193-210 330-347 (358)
92 TIGR01477 RIFIN variant surfac 89.6 0.25 5.5E-06 40.6 2.3 17 193-209 325-341 (353)
93 PF14991 MLANA: Protein melan- 89.0 0.089 1.9E-06 35.6 -0.6 23 184-206 29-51 (118)
94 smart00365 LRR_SD22 Leucine-ri 88.9 0.33 7.2E-06 23.9 1.5 14 10-23 2-15 (26)
95 KOG3864 Uncharacterized conser 88.7 0.033 7.3E-07 42.1 -3.1 83 59-141 101-186 (221)
96 PF15330 SIT: SHP2-interacting 87.7 1.2 2.7E-05 30.2 4.3 8 188-195 8-15 (107)
97 PF15050 SCIMP: SCIMP protein 87.4 0.72 1.6E-05 31.6 2.9 13 186-198 16-28 (133)
98 PF01034 Syndecan: Syndecan do 87.3 0.22 4.7E-06 30.2 0.4 7 198-204 31-37 (64)
99 smart00364 LRR_BAC Leucine-ric 87.0 0.42 9E-06 23.5 1.2 18 10-28 2-19 (26)
100 KOG1947 Leucine rich repeat pr 86.4 0.21 4.7E-06 42.8 0.0 129 9-137 187-327 (482)
101 KOG4308 LRR-containing protein 85.7 0.0057 1.2E-07 52.8 -9.9 141 5-145 110-276 (478)
102 PF05961 Chordopox_A13L: Chord 85.7 2.7 6E-05 25.6 4.5 14 190-203 12-25 (68)
103 PHA03265 envelope glycoprotein 85.0 0.51 1.1E-05 38.6 1.5 27 179-205 349-376 (402)
104 KOG1947 Leucine rich repeat pr 84.7 0.26 5.7E-06 42.2 -0.3 111 34-144 187-308 (482)
105 KOG4308 LRR-containing protein 83.9 0.012 2.6E-07 50.9 -8.7 134 11-145 145-304 (478)
106 PF08374 Protocadherin: Protoc 83.0 0.96 2.1E-05 34.5 2.1 34 176-209 34-67 (221)
107 PF12768 Rax2: Cortical protei 82.8 3.2 6.8E-05 33.5 5.2 12 9-20 15-26 (281)
108 KOG3864 Uncharacterized conser 82.3 0.21 4.6E-06 37.9 -1.5 81 36-116 102-185 (221)
109 PF14575 EphA2_TM: Ephrin type 81.9 0.42 9.1E-06 30.2 -0.1 10 196-205 20-29 (75)
110 KOG3763 mRNA export factor TAP 81.5 0.78 1.7E-05 40.0 1.3 61 83-146 218-285 (585)
111 PF01102 Glycophorin_A: Glycop 81.1 1.9 4E-05 30.1 2.9 27 187-213 71-97 (122)
112 PHA03049 IMV membrane protein; 81.1 2.9 6.2E-05 25.4 3.2 11 192-202 14-24 (68)
113 smart00368 LRR_RI Leucine rich 81.1 1.4 2.9E-05 21.9 1.7 14 107-120 2-15 (28)
114 PF13908 Shisa: Wnt and FGF in 78.1 1.9 4.1E-05 32.2 2.4 23 179-201 77-99 (179)
115 PF15048 OSTbeta: Organic solu 76.8 4.5 9.8E-05 28.1 3.6 13 204-216 61-73 (125)
116 PF14610 DUF4448: Protein of u 76.7 1.5 3.2E-05 33.1 1.4 23 178-200 158-180 (189)
117 PF15102 TMEM154: TMEM154 prot 76.6 1.7 3.7E-05 31.1 1.6 16 180-195 56-71 (146)
118 PF11980 DUF3481: Domain of un 75.9 3.8 8.2E-05 26.2 2.8 27 178-204 16-42 (87)
119 KOG3763 mRNA export factor TAP 75.8 1.9 4.1E-05 37.8 1.9 35 10-45 218-254 (585)
120 PF10577 UPF0560: Uncharacteri 73.9 4.4 9.5E-05 37.1 3.8 20 189-208 284-303 (807)
121 PF05568 ASFV_J13L: African sw 72.9 2.5 5.5E-05 30.0 1.7 22 182-203 31-52 (189)
122 PF03302 VSP: Giardia variant- 71.0 3.3 7.1E-05 35.2 2.3 13 191-203 380-392 (397)
123 PF02009 Rifin_STEVOR: Rifin/s 69.4 4.5 9.7E-05 32.9 2.6 26 182-207 263-288 (299)
124 PF06024 DUF912: Nucleopolyhed 69.3 4.2 9E-05 27.3 2.1 34 175-208 60-93 (101)
125 PF05337 CSF-1: Macrophage col 68.4 1.6 3.6E-05 34.5 0.0 24 188-211 235-258 (285)
126 PF15069 FAM163: FAM163 family 65.7 19 0.00042 25.7 4.9 12 188-199 17-28 (143)
127 TIGR02976 phageshock_pspB phag 64.4 14 0.0003 23.4 3.6 6 184-189 8-13 (75)
128 PF11857 DUF3377: Domain of un 64.0 13 0.00028 23.3 3.3 30 176-205 28-57 (74)
129 PF03229 Alpha_GJ: Alphavirus 63.3 9.2 0.0002 26.1 2.8 19 178-196 84-102 (126)
130 PF14914 LRRC37AB_C: LRRC37A/B 62.4 14 0.0003 26.5 3.6 16 182-197 123-138 (154)
131 TIGR00864 PCC polycystin catio 60.5 6.8 0.00015 41.0 2.5 32 16-48 1-32 (2740)
132 KOG4341 F-box protein containi 59.7 6.5 0.00014 33.5 1.9 134 9-142 293-437 (483)
133 PF12877 DUF3827: Domain of un 58.6 12 0.00025 33.6 3.4 24 175-198 264-287 (684)
134 PHA03286 envelope glycoprotein 58.1 11 0.00023 32.3 2.9 6 198-203 412-417 (492)
135 KOG1219 Uncharacterized conser 57.7 28 0.00061 36.6 5.9 26 124-149 3905-3930(4289)
136 PF05454 DAG1: Dystroglycan (D 57.6 3.4 7.4E-05 33.4 0.0 35 180-214 146-180 (290)
137 KOG4007 Uncharacterized conser 57.1 10 0.00022 28.5 2.4 11 167-177 120-130 (229)
138 PF05434 Tmemb_9: TMEM9; Inte 56.7 9.4 0.0002 27.5 2.1 9 167-175 41-49 (149)
139 PF15345 TMEM51: Transmembrane 56.6 25 0.00054 27.3 4.5 7 180-186 61-67 (233)
140 PF15330 SIT: SHP2-interacting 54.8 22 0.00048 24.2 3.6 30 181-210 4-33 (107)
141 PF04971 Lysis_S: Lysis protei 52.1 18 0.00039 22.3 2.5 13 196-208 49-61 (68)
142 TIGR01477 RIFIN variant surfac 52.0 11 0.00024 31.3 2.1 20 192-211 321-340 (353)
143 PTZ00046 rifin; Provisional 51.6 11 0.00024 31.4 2.0 21 191-211 325-345 (358)
144 PRK09458 pspB phage shock prot 50.9 29 0.00064 21.8 3.4 28 189-216 10-37 (75)
145 TIGR01478 STEVOR variant surfa 50.8 19 0.00042 28.9 3.1 27 188-214 266-292 (295)
146 PF04689 S1FA: DNA binding pro 50.6 55 0.0012 19.8 4.9 27 178-204 14-40 (69)
147 PF11770 GAPT: GRB2-binding ad 50.6 5.1 0.00011 28.7 -0.0 17 181-197 11-27 (158)
148 PF05393 Hum_adeno_E3A: Human 49.6 29 0.00062 22.5 3.2 28 181-208 37-64 (94)
149 KOG3637 Vitronectin receptor, 49.3 27 0.00059 33.7 4.4 12 186-197 985-996 (1030)
150 PF10873 DUF2668: Protein of u 48.7 33 0.00073 24.5 3.7 10 178-187 62-71 (155)
151 PF06667 PspB: Phage shock pro 47.9 26 0.00057 22.1 2.8 24 192-216 14-37 (75)
152 PF03988 DUF347: Repeat of Unk 47.2 44 0.00096 19.5 3.6 11 192-202 39-49 (55)
153 PF00558 Vpu: Vpu protein; In 47.0 32 0.0007 22.0 3.2 13 188-200 11-23 (81)
154 PF10954 DUF2755: Protein of u 46.3 39 0.00084 22.0 3.4 16 190-205 84-99 (100)
155 PHA03049 IMV membrane protein; 45.8 66 0.0014 19.7 4.2 24 188-211 7-30 (68)
156 PTZ00370 STEVOR; Provisional 45.7 16 0.00035 29.3 2.1 28 188-215 262-289 (296)
157 PF12301 CD99L2: CD99 antigen 44.1 28 0.00061 25.8 3.0 9 197-205 134-142 (169)
158 PF05083 LST1: LST-1 protein; 43.9 35 0.00077 21.1 2.8 7 198-204 16-22 (74)
159 PF11694 DUF3290: Protein of u 43.8 37 0.00081 24.6 3.5 10 195-204 31-40 (149)
160 smart00367 LRR_CC Leucine-rich 43.5 17 0.00036 17.3 1.2 13 9-21 1-13 (26)
161 PF15298 AJAP1_PANP_C: AJAP1/P 43.0 48 0.001 25.1 4.0 12 178-189 100-111 (205)
162 PF15183 MRAP: Melanocortin-2 42.3 93 0.002 20.0 4.7 7 196-202 54-60 (90)
163 PF12191 stn_TNFRSF12A: Tumour 41.6 8.7 0.00019 26.7 0.0 14 195-208 98-111 (129)
164 PRK08455 fliL flagellar basal 41.2 66 0.0014 24.1 4.7 12 178-189 18-29 (182)
165 PF00974 Rhabdo_glycop: Rhabdo 39.5 9.8 0.00021 33.4 0.0 12 178-189 451-462 (501)
166 PF05283 MGC-24: Multi-glycosy 39.3 42 0.00091 25.3 3.3 23 180-202 160-182 (186)
167 TIGR03521 GldG gliding-associa 39.2 37 0.0008 30.3 3.5 13 194-206 538-550 (552)
168 KOG4818 Lysosomal-associated m 38.2 33 0.00071 28.6 2.7 26 177-202 326-351 (362)
169 PF01299 Lamp: Lysosome-associ 37.7 42 0.00092 27.4 3.4 30 181-210 270-300 (306)
170 PF06679 DUF1180: Protein of u 37.7 44 0.00095 24.6 3.1 15 182-196 100-114 (163)
171 PTZ00234 variable surface prot 37.4 21 0.00045 30.8 1.6 7 194-200 375-381 (433)
172 PF02480 Herpes_gE: Alphaherpe 36.2 12 0.00026 32.3 0.0 9 187-195 359-367 (439)
173 PF15099 PIRT: Phosphoinositid 35.4 15 0.00033 25.6 0.4 16 195-210 100-115 (129)
174 PF11446 DUF2897: Protein of u 33.9 85 0.0018 18.5 3.4 19 183-201 7-25 (55)
175 PF09777 OSTMP1: Osteopetrosis 33.8 65 0.0014 25.3 3.7 9 164-172 174-182 (237)
176 KOG4341 F-box protein containi 33.0 26 0.00056 30.0 1.5 130 7-136 317-457 (483)
177 PF14316 DUF4381: Domain of un 32.8 44 0.00094 23.9 2.5 17 186-202 28-44 (146)
178 PF07010 Endomucin: Endomucin; 31.1 1E+02 0.0022 24.0 4.2 18 180-197 188-205 (259)
179 PF15471 TMEM171: Transmembran 30.9 37 0.00081 27.1 1.9 34 186-219 166-199 (319)
180 PF14610 DUF4448: Protein of u 29.8 21 0.00046 26.8 0.4 30 180-209 157-186 (189)
181 PF12301 CD99L2: CD99 antigen 28.8 74 0.0016 23.6 3.1 31 178-208 112-142 (169)
182 smart00082 LRRCT Leucine rich 28.5 27 0.00059 19.5 0.7 10 164-173 1-10 (51)
183 PRK09459 pspG phage shock prot 28.4 74 0.0016 20.0 2.6 11 198-208 57-67 (76)
184 PF00599 Flu_M2: Influenza Mat 28.1 7.3 0.00016 24.9 -1.9 15 161-175 10-24 (97)
185 PF11353 DUF3153: Protein of u 27.8 81 0.0018 24.1 3.4 24 182-205 185-208 (209)
186 PF02404 SCF: Stem cell factor 27.3 21 0.00045 28.3 0.0 8 17-24 28-35 (273)
187 PF15347 PAG: Phosphoprotein a 26.9 91 0.002 26.2 3.6 32 178-209 16-47 (428)
188 PRK01821 hypothetical protein; 26.9 1E+02 0.0023 21.8 3.5 7 201-207 117-123 (133)
189 PHA03281 envelope glycoprotein 26.8 63 0.0014 28.6 2.8 34 178-211 559-592 (642)
190 PF15050 SCIMP: SCIMP protein 26.7 68 0.0015 22.2 2.4 17 185-201 12-28 (133)
191 KOG2952 Cell cycle control pro 26.3 1.5E+02 0.0032 24.8 4.6 33 179-211 311-343 (351)
192 PF05808 Podoplanin: Podoplani 26.1 22 0.00048 26.0 0.0 11 179-189 131-141 (162)
193 PRK10381 LPS O-antigen length 26.0 65 0.0014 27.3 2.7 27 179-205 340-366 (377)
194 PF10812 DUF2561: Protein of u 25.5 2.5E+02 0.0055 21.4 5.4 20 173-192 59-78 (207)
195 PF04478 Mid2: Mid2 like cell 25.4 16 0.00035 26.5 -0.8 23 189-211 58-80 (154)
196 PF12768 Rax2: Cortical protei 25.2 1.3E+02 0.0028 24.4 4.2 16 190-205 242-257 (281)
197 TIGR01495 ETRAMP Plasmodium ri 25.1 1.5E+02 0.0033 19.2 3.7 8 198-205 71-78 (85)
198 PF14283 DUF4366: Domain of un 24.7 26 0.00056 27.2 0.1 8 200-207 178-185 (218)
199 PHA03164 hypothetical protein; 23.8 1.2E+02 0.0026 19.1 2.9 12 186-197 65-76 (88)
200 COG1288 Predicted membrane pro 23.3 72 0.0016 27.6 2.5 13 195-207 231-243 (481)
201 PF05624 LSR: Lipolysis stimul 23.2 1.5E+02 0.0033 16.7 3.4 9 180-188 4-12 (49)
202 KOG1094 Discoidin domain recep 23.1 1.2E+02 0.0025 27.7 3.7 23 178-200 392-414 (807)
203 PF15065 NCU-G1: Lysosomal tra 23.0 46 0.001 27.8 1.3 7 171-177 310-316 (350)
204 PF10361 DUF2434: Protein of u 21.8 1.6E+02 0.0034 23.9 3.9 12 164-175 32-43 (296)
205 PF03381 CDC50: LEM3 (ligand-e 21.0 1.2E+02 0.0026 24.4 3.3 11 190-200 256-266 (278)
206 PF06809 NPDC1: Neural prolife 20.1 65 0.0014 26.4 1.5 17 192-208 210-226 (341)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=7.6e-26 Score=208.93 Aligned_cols=162 Identities=37% Similarity=0.641 Sum_probs=132.6
Q ss_pred CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCc
Q 048080 7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLE 86 (223)
Q Consensus 7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 86 (223)
..+++|+.|++++|++.+.+|... ....|+.|++++|.+++..|..|..+++|+.|++++|.+.+..|+.+..+++|+
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 526 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526 (968)
T ss_pred ccCCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCC
Confidence 334444444444444444444322 224567888888888888888888899999999999999999999999999999
Q ss_pred EEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCC
Q 048080 87 HLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 87 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~ 166 (223)
.|++++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|+.+++++|++.+.+|....+..+....+.+|+.
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID 606 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999777777777778889999
Q ss_pred CCCC
Q 048080 167 LCGG 170 (223)
Q Consensus 167 ~C~~ 170 (223)
.|+.
T Consensus 607 lc~~ 610 (968)
T PLN00113 607 LCGG 610 (968)
T ss_pred ccCC
Confidence 9974
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.3e-21 Score=180.89 Aligned_cols=165 Identities=32% Similarity=0.498 Sum_probs=125.7
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC 82 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 82 (223)
|+.|.++++|+.|++++|.+.+.+|... ...+.|+.|++++|.+.+..|..+ .+++|+.|++++|.+++..|..|..+
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRK-WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhh-ccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 4444444555555555555544333322 233445666666666665555544 34677888888888888888888999
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceee
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISL 161 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~ 161 (223)
++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|.. .....+..+++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999988854 44667888999
Q ss_pred cCCCCCCC
Q 048080 162 VGNENLCG 169 (223)
Q Consensus 162 ~~n~~~C~ 169 (223)
++|+..+.
T Consensus 579 s~N~l~~~ 586 (968)
T PLN00113 579 SHNHLHGS 586 (968)
T ss_pred cCCcceee
Confidence 99987653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.1e-22 Score=168.42 Aligned_cols=169 Identities=21% Similarity=0.193 Sum_probs=125.8
Q ss_pred CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080 5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS 84 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 84 (223)
++.+++.|+.|++++|.|. .+..+.+...+.|++|+|++|.|+...+..|..+..|++|+|++|.++.+....|.++++
T Consensus 288 ~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred cccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence 4566777777777777777 666666677777777888888777777777777777888888888777777777888888
Q ss_pred CcEEEcccCcccccCCc---cccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceee
Q 048080 85 LEHLSMQDNSFTGSIPS---TLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISL 161 (223)
Q Consensus 85 L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~ 161 (223)
|+.|||++|.+++.+.+ .|.+|++|+.|++.+|++..+...+|.+++.|+.||+.+|.+...-+.....-.++.+.+
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVM 446 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhh
Confidence 88888888888776654 467788888888888888866667888888888888888888765554422235666777
Q ss_pred cCCCCCCCCCCCC
Q 048080 162 VGNENLCGGSRKS 174 (223)
Q Consensus 162 ~~n~~~C~~~~~~ 174 (223)
.....+|||.-++
T Consensus 447 nSssflCDCql~W 459 (873)
T KOG4194|consen 447 NSSSFLCDCQLKW 459 (873)
T ss_pred cccceEEeccHHH
Confidence 7777889995443
No 4
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=2.7e-20 Score=149.42 Aligned_cols=94 Identities=22% Similarity=0.231 Sum_probs=84.0
Q ss_pred ccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCc
Q 048080 79 LGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTK 157 (223)
Q Consensus 79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~ 157 (223)
|..|++|+.|+|++|+++.+-+.+|.++..++.|.|..|++.......|.++..|++|++.+|++++..|.. .....+.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 555899999999999999999999999999999999999999888889999999999999999999877743 4556778
Q ss_pred ceeecCCCCCCCCCC
Q 048080 158 GISLVGNENLCGGSR 172 (223)
Q Consensus 158 ~l~~~~n~~~C~~~~ 172 (223)
.+.+.+|||.|+|.-
T Consensus 350 ~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRL 364 (498)
T ss_pred eeehccCcccCccch
Confidence 899999999999943
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.77 E-value=2.8e-18 Score=151.21 Aligned_cols=111 Identities=32% Similarity=0.542 Sum_probs=91.7
Q ss_pred CCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080 61 LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY 140 (223)
Q Consensus 61 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~ 140 (223)
++.|+|++|.+.+..|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888888888888888888899999999988888888888888899999999999888888888888899999999
Q ss_pred CcCcccCCchh--hhcCCcceeecCCCCCCCCC
Q 048080 141 NHFEGKVPIEA--IFNSTKGISLVGNENLCGGS 171 (223)
Q Consensus 141 N~l~~~~~~~~--~~~~l~~l~~~~n~~~C~~~ 171 (223)
|.++|.+|..- .......+++.+|+..|+.+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 98888887542 12334567888888888753
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=2e-20 Score=135.10 Aligned_cols=143 Identities=24% Similarity=0.405 Sum_probs=110.7
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc-cCCcccc
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG-EIPTTLG 80 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~ 80 (223)
+|+.++++.+|+.|++.+|+|. ++|.++.+. +.|+.|+++-|.+. ..|..|+.++.|+.||+++|++.. ..|+.|.
T Consensus 48 vppnia~l~nlevln~~nnqie-~lp~~issl-~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIE-ELPTSISSL-PKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhh-hcChhhhhc-hhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchh
Confidence 6777788888888888888887 777776554 44477888878777 777778888888888888877753 4677777
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 149 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 149 (223)
.+..|+.|+|++|.+. .+|...+.+++|+.|.+++|.+- ..|..++.+..|+.|.+.+|.++-..|.
T Consensus 125 ~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 125 YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 7778888888888877 66767888888888888888887 6788888888888888888888855443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=1.3e-18 Score=145.94 Aligned_cols=141 Identities=23% Similarity=0.237 Sum_probs=83.1
Q ss_pred CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080 5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS 84 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 84 (223)
.|.++.+|..|.|+.|+++ .+|...|+.++.|+.|+|..|.|.-...-.|.++++|+.|.|..|.+.....+.|.+|.+
T Consensus 192 ~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK 270 (873)
T ss_pred cccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc
Confidence 3445555555555555555 555555555555555555555555333344555555555555555555444555666666
Q ss_pred CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCccc
Q 048080 85 LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK 146 (223)
Q Consensus 85 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 146 (223)
+++|+|+.|+++..-.+.+.++++|++|+|+.|.+..+.++.+...++|+.|++++|.++..
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 66666666666655555566666666667777766666666666667777777777766643
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=3.7e-18 Score=144.61 Aligned_cols=161 Identities=27% Similarity=0.375 Sum_probs=133.6
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
||+.+..|..|+.||+++|+++ ++|..+-..... ..|+|++|+|..++..-|.+++.|-.|||++|++. ..|.....
T Consensus 95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~-iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR 171 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNS-IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR 171 (1255)
T ss_pred CCchhcccccceeeecchhhhh-hcchhhhhhcCc-EEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence 7999999999999999999998 999987655444 78999999999666667788999999999999998 56667788
Q ss_pred CCCCcEEEcccCcccc-------------------------cCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEE
Q 048080 82 CTSLEHLSMQDNSFTG-------------------------SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFL 136 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~-------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l 136 (223)
+..|++|+|++|.+.. -+|.++..+.+|..+|+++|.+. ..|+.+..+++|+.|
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL 250 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence 8888889998886642 24566677778889999999998 889999999999999
Q ss_pred eccCCcCcccCCchhhhcCCcceeecCCCC
Q 048080 137 NLSYNHFEGKVPIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 137 ~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~ 166 (223)
++++|+++..--....+..+.+++++.|..
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchh
Confidence 999999986555556677788888887754
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=9.9e-19 Score=126.41 Aligned_cols=156 Identities=24% Similarity=0.370 Sum_probs=133.4
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL 85 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 85 (223)
+.++++.+.|.+++|+++ .+|+.+.... +|+.|++.+|++. ..|..++.|++|+.|+++.|++. +.|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~-nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELK-NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhh-hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 346778889999999999 8998886654 4599999999999 78889999999999999999998 889999999999
Q ss_pred cEEEcccCcccc-cCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080 86 EHLSMQDNSFTG-SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164 (223)
Q Consensus 86 ~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n 164 (223)
+.|||++|++.. ..|+.|..++.|+.|+|++|.+. .+|..++.+.+|+.|.+.+|.+-...........++.+.+.||
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 999999999873 67888999999999999999999 8888899999999999999998744333355555666666666
Q ss_pred CC
Q 048080 165 EN 166 (223)
Q Consensus 165 ~~ 166 (223)
..
T Consensus 184 rl 185 (264)
T KOG0617|consen 184 RL 185 (264)
T ss_pred ee
Confidence 43
No 10
>PLN03150 hypothetical protein; Provisional
Probab=99.65 E-value=1e-15 Score=135.00 Aligned_cols=112 Identities=38% Similarity=0.544 Sum_probs=104.4
Q ss_pred ceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080 37 SVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116 (223)
Q Consensus 37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 116 (223)
++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchhhhCC-CCCCEEeccCCcCcccCC
Q 048080 117 NNLSGHIPQYLENL-SFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 117 N~l~~~~p~~~~~l-~~L~~l~l~~N~l~~~~~ 148 (223)
|.++|.+|..+... .++..+++.+|+..|..|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999988764 467889999998877554
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=1.3e-16 Score=139.80 Aligned_cols=162 Identities=28% Similarity=0.354 Sum_probs=120.3
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccC-------------------------CceEEEccCCcccccCCcCC
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIIT-------------------------RSVLLDLFDNLLSGHFPAEV 55 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~-------------------------~l~~L~L~~n~l~~~~~~~~ 55 (223)
.||+...+++.|+.|++..|.+. .+|+..+.-.. .|+.|++.+|.++...-..+
T Consensus 301 yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 301 YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 37888888999999999999998 88876554333 24455666666665555666
Q ss_pred CCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCE
Q 048080 56 GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSF 135 (223)
Q Consensus 56 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 135 (223)
.++++|+.|+|++|++.......+..++.|+.|+||+|+++ .+|++...+..|++|...+|++. ..| .+..++.|+.
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 77788888888888887554556777888888888888888 66677777777777777777777 556 6788888889
Q ss_pred EeccCCcCcccC-CchhhhcCCcceeecCCCC
Q 048080 136 LNLSYNHFEGKV-PIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 136 l~l~~N~l~~~~-~~~~~~~~l~~l~~~~n~~ 166 (223)
+|++.|.++... +....++.++.++++||.+
T Consensus 457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred EecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999988887533 3223337888899999886
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.58 E-value=7.2e-17 Score=136.95 Aligned_cols=166 Identities=25% Similarity=0.305 Sum_probs=142.8
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
.||.++..|.+|..+|++.|.+. .+|+.++...+ |+.|+|++|.|+ .+.-......+|++|++++|+++ ..|+++.
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~-LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRN-LRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCC-cchHHHhhhhh-hheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHh
Confidence 37999999999999999999998 99998877655 499999999998 55555566789999999999999 7899999
Q ss_pred CCCCCcEEEcccCcccc-cCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcce
Q 048080 81 GCTSLEHLSMQDNSFTG-SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGI 159 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l 159 (223)
.++.|+.|++.+|+++- -+|..++.+.+|+++..++|.+. ..|..+..+++|+.|.++.|.+-......-.+..+..+
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVL 367 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCccee
Confidence 99999999999998873 46788999999999999999998 88999999999999999999988544445667888889
Q ss_pred eecCCCCCCCCC
Q 048080 160 SLVGNENLCGGS 171 (223)
Q Consensus 160 ~~~~n~~~C~~~ 171 (223)
++..||.+--.+
T Consensus 368 DlreNpnLVMPP 379 (1255)
T KOG0444|consen 368 DLRENPNLVMPP 379 (1255)
T ss_pred eccCCcCccCCC
Confidence 999998876543
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.57 E-value=3.8e-17 Score=131.89 Aligned_cols=159 Identities=28% Similarity=0.401 Sum_probs=85.4
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccc----------------------cCCcCCCCC
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG----------------------HFPAEVGNL 58 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~----------------------~~~~~~~~l 58 (223)
++|++++.+..|+.++..+|++. .+|++++..... ..+++.+|.+.. .+|..+++|
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l-~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l 205 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKL-SKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGL 205 (565)
T ss_pred ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHH-HHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcch
Confidence 35666666666666666666666 666665554433 445555555553 333444444
Q ss_pred CCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccc-cCCCCCCEEECCCCccccccchhhhCCCCCCEEe
Q 048080 59 KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTL-SSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN 137 (223)
Q Consensus 59 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ 137 (223)
.+|.-|++.+|.+. ..| .|.+++.|..++++.|.+. .+|... .+++++.+|||++|+++ ..|+.+.-+++|..||
T Consensus 206 ~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 206 ESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD 281 (565)
T ss_pred hhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc
Confidence 44444444444444 223 3444444444555544444 333322 35566666666666666 5566666666666666
Q ss_pred ccCCcCcccCCchhhhcCCcceeecCCCC
Q 048080 138 LSYNHFEGKVPIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 138 l~~N~l~~~~~~~~~~~~l~~l~~~~n~~ 166 (223)
+++|.+++..+..... .+..+.+.|||.
T Consensus 282 lSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 282 LSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccCCccccCCcccccc-eeeehhhcCCch
Confidence 6666666544443333 455555556653
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=1e-16 Score=128.99 Aligned_cols=157 Identities=25% Similarity=0.255 Sum_probs=133.9
Q ss_pred ecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc-cCc
Q 048080 16 TTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ-DNS 94 (223)
Q Consensus 16 ~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~N~ 94 (223)
+=++-+++ ++|.++ ++..+.++|..|.|+.+++++|..+++|+.|||++|.|+.+.|++|.++.++..|-+- +|+
T Consensus 52 dCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 52 DCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 34555566 888764 5555889999999999999999999999999999999999999999999998665554 599
Q ss_pred ccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCC-chhhhcCCcceeecCCCCCCCCCCC
Q 048080 95 FTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP-IEAIFNSTKGISLVGNENLCGGSRK 173 (223)
Q Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~-~~~~~~~l~~l~~~~n~~~C~~~~~ 173 (223)
|+...-++|.++.+|+.|.+.-|++.-...++|..++++..|.+-+|.+...+- .......++.+.+..||+.|+|.-.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 998888899999999999999999998888999999999999999999985544 2344667778889999999999776
Q ss_pred CCc
Q 048080 174 SKF 176 (223)
Q Consensus 174 ~~~ 176 (223)
+..
T Consensus 208 wla 210 (498)
T KOG4237|consen 208 WLA 210 (498)
T ss_pred hhh
Confidence 553
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=6.5e-16 Score=124.86 Aligned_cols=152 Identities=27% Similarity=0.419 Sum_probs=101.1
Q ss_pred CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080 12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ 91 (223)
Q Consensus 12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (223)
...++++.|++. ++|..+......++.+.+++|.++ ..|..++.+++|..|+|++|-+. ..|..++.+..|+.||++
T Consensus 390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLS 466 (565)
T ss_pred eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccc
Confidence 344555555555 555555544444444555555555 55556667777888888777776 566777777778888888
Q ss_pred cCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCC
Q 048080 92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENL 167 (223)
Q Consensus 92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~ 167 (223)
.|++. .+|.....+..++.+-.++|++....|+.+..+.+|++||+.+|.+....|......++.++.+.|||+.
T Consensus 467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 88777 6666555555555555566666655666677777788888888887766666667777777888888763
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.45 E-value=7.1e-14 Score=103.60 Aligned_cols=104 Identities=29% Similarity=0.309 Sum_probs=29.7
Q ss_pred ceEEEccCCcccccCCcCCC-CCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccc-cCCCCCCEEEC
Q 048080 37 SVLLDLFDNLLSGHFPAEVG-NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTL-SSLKSITELDL 114 (223)
Q Consensus 37 l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 114 (223)
+++|+|.+|.|+.+. .+. .+.+|+.|++++|.|+.+ +.+..++.|++|++++|+++.. .+.+ ..+++|++|++
T Consensus 21 ~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 21 LRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEEC
Confidence 356666666666322 222 355666666666666643 2355566666666666666632 2223 34566666666
Q ss_pred CCCcccccc-chhhhCCCCCCEEeccCCcCcc
Q 048080 115 SRNNLSGHI-PQYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 115 ~~N~l~~~~-p~~~~~l~~L~~l~l~~N~l~~ 145 (223)
++|++.... -..+..+++|+.|++.+|+++.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 666665321 1345556666666666666653
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.41 E-value=2.1e-14 Score=120.58 Aligned_cols=137 Identities=31% Similarity=0.494 Sum_probs=122.9
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
.||++++++..|++++|+.|++. .+|..++.+. |+.|.+++|+++ ..|..++.+..|..|+.+.|.+. ..|..++
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~ 186 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG 186 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh
Confidence 38999999999999999999998 9999887654 488999999999 77777888899999999999998 6777889
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 145 (223)
++.+|+.|++..|++. .+|..+..++ |..||+++|+++ .+|-.|.++..|++|-|.+|++..
T Consensus 187 ~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 9999999999999999 6666677765 999999999999 889999999999999999999985
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.38 E-value=4.2e-13 Score=99.52 Aligned_cols=127 Identities=25% Similarity=0.247 Sum_probs=53.0
Q ss_pred CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccc-cCCCCC
Q 048080 7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTL-GGCTSL 85 (223)
Q Consensus 7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L 85 (223)
.+...+++|++.+|.|. .+. .+...+..|+.|++++|.|+... .+..+++|++|++++|.|+.+. +.+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence 34557899999999998 664 45545677899999999999543 4788999999999999999653 334 468999
Q ss_pred cEEEcccCcccccCC-ccccCCCCCCEEECCCCccccc---cchhhhCCCCCCEEec
Q 048080 86 EHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGH---IPQYLENLSFLSFLNL 138 (223)
Q Consensus 86 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~l~l 138 (223)
+.|++++|++..... ..+..+++|+.|++.+|.++.. ....+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999999999985322 4577889999999999999843 1235677899999874
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=9.6e-14 Score=113.13 Aligned_cols=162 Identities=22% Similarity=0.228 Sum_probs=99.8
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccC--CceEEEccCCcccc----cCCcCCCCC-CCCCeEeccCcccccc--
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIIT--RSVLLDLFDNLLSG----HFPAEVGNL-KHLVSLDISSNMFSGE-- 74 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~--~l~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~-- 74 (223)
.++..+++|+.|++++|.+.+..+..+..... .|+.|++++|.++. .....+..+ ++|+.|++++|.+++.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 45566778888888888876434433322222 36888888887762 222334455 7788888888887732
Q ss_pred --CCccccCCCCCcEEEcccCccccc----CCccccCCCCCCEEECCCCcccccc----chhhhCCCCCCEEeccCCcCc
Q 048080 75 --IPTTLGGCTSLEHLSMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSGHI----PQYLENLSFLSFLNLSYNHFE 144 (223)
Q Consensus 75 --~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~l~l~~N~l~ 144 (223)
.+..+..+.+|++|++++|.+++. ++..+..+++|++|++++|.+++.. ...+..+++|+.|++++|++.
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 233456667788888888877732 2333455567888888888776432 334556677888888888776
Q ss_pred ccCCc--hhh----hcCCcceeecCCC
Q 048080 145 GKVPI--EAI----FNSTKGISLVGNE 165 (223)
Q Consensus 145 ~~~~~--~~~----~~~l~~l~~~~n~ 165 (223)
+.... ... ...++.+++.+|.
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCC
Confidence 42111 111 1466667776664
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=7.3e-12 Score=117.86 Aligned_cols=157 Identities=19% Similarity=0.239 Sum_probs=104.9
Q ss_pred CCCCCCCCCCeeecccCc------cccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCc
Q 048080 4 PSLGNCQNLILLTTCKNK------LSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT 77 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~------i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 77 (223)
.+|.+|++|+.|.+..+. +...+|+++...+..|+.|++.++.+. .+|..| .+.+|+.|++++|.+. ..+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 467888888888886553 223567666666667788888887776 556555 4677888888887776 4555
Q ss_pred cccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCc
Q 048080 78 TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTK 157 (223)
Q Consensus 78 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~ 157 (223)
.+..+++|+.++|+++.....+|+ +..+++|+.|+|++|.....+|..+..+++|+.|++++|.....+|......+++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~ 707 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLY 707 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCC
Confidence 667777788888877654445554 6667777777777766555677777777777777777765444455433344555
Q ss_pred ceeecCC
Q 048080 158 GISLVGN 164 (223)
Q Consensus 158 ~l~~~~n 164 (223)
.+++.++
T Consensus 708 ~L~Lsgc 714 (1153)
T PLN03210 708 RLNLSGC 714 (1153)
T ss_pred EEeCCCC
Confidence 5555544
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.34 E-value=1.1e-11 Score=116.77 Aligned_cols=157 Identities=23% Similarity=0.220 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC 82 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 82 (223)
|..+..+++|+.|+++++.....+|. +...+.|++|++++|.....+|..+..+++|+.|++++|..-...|..+ ++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 44455566666666655443335553 2334555666666655444556666666666666666653222333322 33
Q ss_pred CCCcEEEccc---------------------CcccccCCccc------------------------------cCCCCCCE
Q 048080 83 TSLEHLSMQD---------------------NSFTGSIPSTL------------------------------SSLKSITE 111 (223)
Q Consensus 83 ~~L~~L~L~~---------------------N~l~~~~~~~~------------------------------~~l~~L~~ 111 (223)
++|+.|++++ |.+. .+|..+ ...++|+.
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 4444444433 3332 122111 01235666
Q ss_pred EECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecC
Q 048080 112 LDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVG 163 (223)
Q Consensus 112 L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~ 163 (223)
|++++|...+.+|..+..+++|+.|++++|.....+|.......++.+++++
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~ 834 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG 834 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC
Confidence 6777666665677777788888888887765444444332334444444444
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=5.6e-14 Score=123.59 Aligned_cols=104 Identities=26% Similarity=0.290 Sum_probs=79.9
Q ss_pred CCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080 61 LVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY 140 (223)
Q Consensus 61 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~ 140 (223)
|+.|++.+|.++...-..+.+..+|+.|+|++|++.......+.++..|+.|+|++|+++ .+|+++..++.|++|...+
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence 444455555555444455666788999999999998444456788899999999999999 6788899999999999999
Q ss_pred CcCcccCCchhhhcCCcceeecCCCC
Q 048080 141 NHFEGKVPIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 141 N~l~~~~~~~~~~~~l~~l~~~~n~~ 166 (223)
|.+.+ .|.....+.++.+|++.|..
T Consensus 440 N~l~~-fPe~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 440 NQLLS-FPELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred Cceee-chhhhhcCcceEEecccchh
Confidence 99884 45667788888888888744
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=4.5e-12 Score=113.31 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=17.4
Q ss_pred CCCCeeecccCccccCCChhhhhccCCceEEEccCCccc
Q 048080 10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLS 48 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~ 48 (223)
++|+.|++++|.+. .+|..++ ..|+.|++++|.+.
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT 254 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC
Confidence 35666666666665 5554332 22344444444444
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=4.9e-12 Score=113.07 Aligned_cols=147 Identities=20% Similarity=0.324 Sum_probs=99.1
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
+|..+. ++|+.|++++|+++ .+|..++ ..|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+.
T Consensus 193 LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~- 261 (754)
T PRK15370 193 IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP- 261 (754)
T ss_pred CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh-
Confidence 455443 57899999999998 8898765 46799999999998 4555443 46888888888887 4555543
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhh-------------------CCCCCCEEeccCCc
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE-------------------NLSFLSFLNLSYNH 142 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-------------------~l~~L~~l~l~~N~ 142 (223)
.+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. -.++|+.|++++|.
T Consensus 262 -s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~ 336 (754)
T PRK15370 262 -SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA 336 (754)
T ss_pred -CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCc
Confidence 47888888888888 4565443 478888888888774 332221 11346666666666
Q ss_pred CcccCCchhhhcCCcceeecCCCC
Q 048080 143 FEGKVPIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 143 l~~~~~~~~~~~~l~~l~~~~n~~ 166 (223)
+++ +|. .....+..+++++|..
T Consensus 337 Lt~-LP~-~l~~sL~~L~Ls~N~L 358 (754)
T PRK15370 337 LTS-LPA-SLPPELQVLDVSKNQI 358 (754)
T ss_pred ccc-CCh-hhcCcccEEECCCCCC
Confidence 664 332 2235667777777754
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=4.5e-13 Score=109.18 Aligned_cols=157 Identities=26% Similarity=0.272 Sum_probs=99.4
Q ss_pred CCCCeeecccCccccC----CChhhhhccCCceEEEccCCccccc----CCcCCCCCCCCCeEeccCcccccc----CCc
Q 048080 10 QNLILLTTCKNKLSGT----VPRQLLRIITRSVLLDLFDNLLSGH----FPAEVGNLKHLVSLDISSNMFSGE----IPT 77 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~----~p~~~~~~~~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~ 77 (223)
++|++|++++|.+.+. +...+....+.|+.|++++|.+++. .+..+..+++|++|++++|.+++. .+.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 3488888888887631 2222222226678888888888732 233456677888888888887742 223
Q ss_pred cccCCCCCcEEEcccCccccc----CCccccCCCCCCEEECCCCccccccchhhhC-----CCCCCEEeccCCcCcc--c
Q 048080 78 TLGGCTSLEHLSMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSGHIPQYLEN-----LSFLSFLNLSYNHFEG--K 146 (223)
Q Consensus 78 ~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~l~l~~N~l~~--~ 146 (223)
.+..+++|+.|++++|.+++. +...+..+++|++|++++|.+++.....+.. .+.|+.+++++|.++. .
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 345556888888888887643 2334566778888888888887533332221 3678888888888762 1
Q ss_pred CCch---hhhcCCcceeecCCCC
Q 048080 147 VPIE---AIFNSTKGISLVGNEN 166 (223)
Q Consensus 147 ~~~~---~~~~~l~~l~~~~n~~ 166 (223)
.+.. .....+..+++++|..
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCC
Confidence 1111 2234566777777654
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=8.1e-14 Score=117.10 Aligned_cols=160 Identities=28% Similarity=0.369 Sum_probs=122.8
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
++|.+++.+..|+.+.+..|.+. .+|+.+.. +..|+.+||+.|+++ ..|..++.++ |+.|.+++|+++ ..|..++
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig 163 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIG 163 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccc
Confidence 46777777777777888888887 77776544 344588888888888 5565555554 788888888887 6677777
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCccee
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGIS 160 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~ 160 (223)
.+..|..||.+.|.+. ..|..++++.+|+.|++..|++. ..|..+..++ |..||++.|++....-....+..++.+.
T Consensus 164 ~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeee
Confidence 8888888888888888 66777888888999999999988 5566677555 8999999999994333446677888899
Q ss_pred ecCCCCCC
Q 048080 161 LVGNENLC 168 (223)
Q Consensus 161 ~~~n~~~C 168 (223)
+..||...
T Consensus 241 LenNPLqS 248 (722)
T KOG0532|consen 241 LENNPLQS 248 (722)
T ss_pred eccCCCCC
Confidence 99998753
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.27 E-value=9.7e-12 Score=110.98 Aligned_cols=80 Identities=26% Similarity=0.374 Sum_probs=52.2
Q ss_pred CCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEecc
Q 048080 60 HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 139 (223)
Q Consensus 60 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~ 139 (223)
+|+.|++++|.+++ .|.. .++|+.|++++|++++ +|..+ .+|+.|++++|+++ .+|..+..+++|+.++++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 46666666666663 3322 2456677777777763 44422 35677777777777 567777778888888888
Q ss_pred CCcCcccCC
Q 048080 140 YNHFEGKVP 148 (223)
Q Consensus 140 ~N~l~~~~~ 148 (223)
+|++++..+
T Consensus 454 ~N~Ls~~~~ 462 (788)
T PRK15387 454 GNPLSERTL 462 (788)
T ss_pred CCCCCchHH
Confidence 888876554
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.26 E-value=5.2e-12 Score=77.65 Aligned_cols=56 Identities=34% Similarity=0.508 Sum_probs=20.3
Q ss_pred CeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080 62 VSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117 (223)
Q Consensus 62 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 117 (223)
++|++++|.++.+.++.|.++++|++|++++|+++...+++|.++++|++|++++|
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 33333333333333333333333333333333333333333333333333333333
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=2.7e-11 Score=108.16 Aligned_cols=76 Identities=26% Similarity=0.338 Sum_probs=42.9
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeec
Q 048080 84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLV 162 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~ 162 (223)
+|+.|++++|.+++ +|.. .++|+.|++++|.+++ +|... .+|+.|++++|+++ .+|.. ..+..+..+++.
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 45555555555552 3321 2345666666666653 34322 34566777777776 34432 345677788999
Q ss_pred CCCCCC
Q 048080 163 GNENLC 168 (223)
Q Consensus 163 ~n~~~C 168 (223)
+|+...
T Consensus 454 ~N~Ls~ 459 (788)
T PRK15387 454 GNPLSE 459 (788)
T ss_pred CCCCCc
Confidence 998754
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=7.4e-13 Score=103.97 Aligned_cols=133 Identities=25% Similarity=0.283 Sum_probs=105.4
Q ss_pred CCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEE
Q 048080 9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHL 88 (223)
Q Consensus 9 l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 88 (223)
...|+.+|+++|.|+ .+.++. ...+.++.|++++|.+. .... +..+++|+.|||++|.++ .+.++-..+.++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhh-hhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 356888999999998 888765 56677799999999988 3333 788999999999999988 455566678899999
Q ss_pred EcccCcccccCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCcccCC
Q 048080 89 SMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 89 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~~ 148 (223)
.|+.|.+... ..+..+-+|..||+++|++..... ..++.+|-|+++.+.+|++.+.+.
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 9999988633 346777789999999999974322 357788889999999999986554
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.23 E-value=8.8e-12 Score=76.61 Aligned_cols=61 Identities=38% Similarity=0.587 Sum_probs=57.4
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcC
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 143 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 143 (223)
++|++|++++|+++...++.|.++++|++|++++|.+++..+.+|..+++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988888999999999999999999988889999999999999999975
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=1e-10 Score=98.33 Aligned_cols=18 Identities=44% Similarity=0.521 Sum_probs=8.1
Q ss_pred hhCCCCCCEEeccCCcCc
Q 048080 127 LENLSFLSFLNLSYNHFE 144 (223)
Q Consensus 127 ~~~l~~L~~l~l~~N~l~ 144 (223)
+..++.++++++++|.++
T Consensus 251 ~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 251 IGNLSNLETLDLSNNQIS 268 (394)
T ss_pred hccccccceecccccccc
Confidence 334444444444444444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=2.1e-11 Score=95.86 Aligned_cols=125 Identities=25% Similarity=0.220 Sum_probs=96.0
Q ss_pred ceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080 37 SVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116 (223)
Q Consensus 37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 116 (223)
|+++||++|.|+ .++.+..-++.++.|++++|.+..+ +.+..+++|+.||||+|.++ ...+.-..+.+.+.|.|+.
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 478999999998 6777777889999999999999855 33788999999999999988 4445455677889999999
Q ss_pred CccccccchhhhCCCCCCEEeccCCcCccc--CCchhhhcCCcceeecCCCCC
Q 048080 117 NNLSGHIPQYLENLSFLSFLNLSYNHFEGK--VPIEAIFNSTKGISLVGNENL 167 (223)
Q Consensus 117 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~--~~~~~~~~~l~~l~~~~n~~~ 167 (223)
|.+... +.+..+-+|..||+++|++... +......+.+..+.+.+||..
T Consensus 362 N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 362 NKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 998733 3466777889999999998742 122234555667778888763
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=2.7e-10 Score=95.79 Aligned_cols=139 Identities=32% Similarity=0.457 Sum_probs=95.1
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC 82 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 82 (223)
|..+.++++|+.|++++|++. ++|.... ..+.|+.|++++|.+. .+|.....+..|+++++++|.+. ..+..+..+
T Consensus 156 ~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~ 231 (394)
T COG4886 156 PSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNL 231 (394)
T ss_pred hhhhhccccccccccCCchhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhc
Confidence 345566666666666666666 6664322 3444566677777666 44443334445777777777433 344556667
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCC
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 148 (223)
.++..+.+.+|++. ..+..+..+++++.|++++|.++...+ +..+.+++.+++++|.+....+
T Consensus 232 ~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 232 KNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 77777778888777 436678888899999999999995543 8889999999999999876544
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.97 E-value=1.5e-11 Score=106.40 Aligned_cols=160 Identities=24% Similarity=0.185 Sum_probs=117.0
Q ss_pred CCCCCCCCCCCeeecccCccccC--------------------------------CChhhhhccCCceEEEccCCccccc
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGT--------------------------------VPRQLLRIITRSVLLDLFDNLLSGH 50 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~--------------------------------~p~~~~~~~~~l~~L~L~~n~l~~~ 50 (223)
|-.+..+.+|++|.+.++.+... +-. .+.|.. |.+.+.++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~n-s~~Wn~-L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISN-SPVWNK-LATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhcccccc-chhhhh-HhhhhcchhhHH-h
Confidence 44567778899998888776520 000 112222 244567777777 6
Q ss_pred CCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCC
Q 048080 51 FPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENL 130 (223)
Q Consensus 51 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 130 (223)
.+.++.-++.|+.|+|++|.++... .+..|+.|++|||++|.++ .+|..-..-.+|+.|.+++|.++... .+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~--gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLR--GIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhh--hHHhh
Confidence 6677777889999999999998553 7788999999999999999 55543222245999999999998543 47788
Q ss_pred CCCCEEeccCCcCcccCC--chhhhcCCcceeecCCCCCCCC
Q 048080 131 SFLSFLNLSYNHFEGKVP--IEAIFNSTKGISLVGNENLCGG 170 (223)
Q Consensus 131 ~~L~~l~l~~N~l~~~~~--~~~~~~~l~~l~~~~n~~~C~~ 170 (223)
.+|+.||+++|-+.+-.. ..+.+..+..+.+.|||.-|..
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999999999999886433 3366777888999999988864
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.1e-10 Score=92.39 Aligned_cols=87 Identities=20% Similarity=0.259 Sum_probs=48.8
Q ss_pred CCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCC-ccccCCCCCCEEECCCCccccc-cchh-----hhCC
Q 048080 58 LKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGH-IPQY-----LENL 130 (223)
Q Consensus 58 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~p~~-----~~~l 130 (223)
+++|+.|+|..|...........-+..|+.|||++|++-.... ...+.++.|..|+++.+.++.+ .|+. ....
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 3445555555553222223333445667777777776652211 2345667777777777766643 2222 3456
Q ss_pred CCCCEEeccCCcCc
Q 048080 131 SFLSFLNLSYNHFE 144 (223)
Q Consensus 131 ~~L~~l~l~~N~l~ 144 (223)
++|++|++..|++.
T Consensus 301 ~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 301 PKLEYLNISENNIR 314 (505)
T ss_pred ccceeeecccCccc
Confidence 77788888888775
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.74 E-value=1.3e-10 Score=100.64 Aligned_cols=129 Identities=29% Similarity=0.296 Sum_probs=100.4
Q ss_pred CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080 11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM 90 (223)
Q Consensus 11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 90 (223)
.|...++++|.+. .+.+.+ +.++.++.|+|++|++.... .+..++.|++||+++|.+..+.--...++. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 4677788999997 666654 66677799999999998543 678899999999999999844322344444 999999
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCccc
Q 048080 91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGK 146 (223)
Q Consensus 91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~ 146 (223)
.+|.++... .+.++.+|+.||++.|-+.+... ..+..+..|+.|.+.||++.|.
T Consensus 240 rnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 240 RNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999998442 36788999999999999875422 2355677889999999999863
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.69 E-value=6.9e-10 Score=77.82 Aligned_cols=80 Identities=23% Similarity=0.412 Sum_probs=36.3
Q ss_pred eEEEccCCcccccCCcCCC-CCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080 38 VLLDLFDNLLSGHFPAEVG-NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116 (223)
Q Consensus 38 ~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 116 (223)
+..+|++|.+. ..|..|. ..+.+++++|++|.++ ..|..+..++.|+.|+++.|.+. ..|..+..+.++..|+..+
T Consensus 56 ~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 56 TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence 33455555555 2222222 2234455555555554 33333555555555555555554 3343344444444555444
Q ss_pred Cccc
Q 048080 117 NNLS 120 (223)
Q Consensus 117 N~l~ 120 (223)
|.+.
T Consensus 133 na~~ 136 (177)
T KOG4579|consen 133 NARA 136 (177)
T ss_pred Cccc
Confidence 4444
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.1e-09 Score=85.64 Aligned_cols=159 Identities=24% Similarity=0.158 Sum_probs=97.5
Q ss_pred CCCCCCCeeecccCccccCCCh--hhhhccCCceEEEccCCcccccCCcC-CCCCCCCCeEeccCccccccCCc-cccCC
Q 048080 7 GNCQNLILLTTCKNKLSGTVPR--QLLRIITRSVLLDLFDNLLSGHFPAE-VGNLKHLVSLDISSNMFSGEIPT-TLGGC 82 (223)
Q Consensus 7 ~~l~~L~~L~l~~n~i~~~~p~--~~~~~~~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~~l 82 (223)
..|++++.||++.|-+. .... .+..-++.|+.|+++.|.+....... -..++.|+.|.++.|.++...-. ....+
T Consensus 143 k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 45667777777777665 3222 23344566677777777665322211 12456677777777776632222 23456
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCccc-CCch------hhhc
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGK-VPIE------AIFN 154 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~-~~~~------~~~~ 154 (223)
++|..|+|..|...........-+..|+.|||++|++-.... .....++.|+.|+++.+.+... .|+. ..+.
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 778888888885332333344556788999999988874431 3466788888888888887652 1221 4466
Q ss_pred CCcceeecCCCC
Q 048080 155 STKGISLVGNEN 166 (223)
Q Consensus 155 ~l~~l~~~~n~~ 166 (223)
.++.+.+..|+.
T Consensus 302 kL~~L~i~~N~I 313 (505)
T KOG3207|consen 302 KLEYLNISENNI 313 (505)
T ss_pred cceeeecccCcc
Confidence 777777777765
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=1.2e-08 Score=86.48 Aligned_cols=104 Identities=31% Similarity=0.286 Sum_probs=46.0
Q ss_pred CCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEEC
Q 048080 35 TRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDL 114 (223)
Q Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 114 (223)
..++.|++.+|.|..+. ..+..+++|++|++++|.|+.+. .+..++.|+.|++++|.++.. . .+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~-~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI-S-GLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc-c-CCccchhhhcccC
Confidence 33355555555554222 22344555555555555554332 233344455555555555422 1 2333445555555
Q ss_pred CCCccccccchhhhCCCCCCEEeccCCcC
Q 048080 115 SRNNLSGHIPQYLENLSFLSFLNLSYNHF 143 (223)
Q Consensus 115 ~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 143 (223)
++|.+....+.....+.+++.+++++|.+
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCch
Confidence 55555433220023444444444444444
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.51 E-value=2e-07 Score=69.60 Aligned_cols=126 Identities=21% Similarity=0.118 Sum_probs=92.9
Q ss_pred CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080 12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ 91 (223)
Q Consensus 12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (223)
=+.+++.+.++. .+ +.+..+......+||++|.+.. -..|..++.|.+|.+++|+|+.+.|.--..+++|+.|.|.
T Consensus 21 e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-ch-hhccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 456778887775 33 3355666666889999998862 2457888999999999999998877766667889999999
Q ss_pred cCcccccCC-ccccCCCCCCEEECCCCcccccc---chhhhCCCCCCEEeccCC
Q 048080 92 DNSFTGSIP-STLSSLKSITELDLSRNNLSGHI---PQYLENLSFLSFLNLSYN 141 (223)
Q Consensus 92 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~l~l~~N 141 (223)
+|++..... +-+..+++|++|.+-+|.++..- --.+..+|+|+.||+.+=
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 998873211 23677889999999999887431 134567888999987653
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=1.6e-08 Score=85.67 Aligned_cols=109 Identities=28% Similarity=0.309 Sum_probs=85.5
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL 85 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 85 (223)
+..+.+|+.|++.+|+|. .+... ......|++|++++|.|+...+ +..++.|+.|++++|.|+.+ ..+..+..|
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchh-hcccc-hhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhh
Confidence 567889999999999998 55542 3456677999999999986544 45677799999999999854 456668999
Q ss_pred cEEEcccCcccccCC-ccccCCCCCCEEECCCCcccc
Q 048080 86 EHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSG 121 (223)
Q Consensus 86 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 121 (223)
+.+++++|.+....+ . ...+.+++.+++.+|.+..
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 999999999985544 2 4677888888888888763
No 43
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.48 E-value=6.2e-07 Score=63.21 Aligned_cols=123 Identities=19% Similarity=0.254 Sum_probs=66.4
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT 83 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 83 (223)
.+|.++++|+.+.+.. .+. .+++..|.....++.+.+.++ +.......|.++++++.+.+.. .+.......|..+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4677777888888774 565 777777877767788888775 6656667788877788888865 44445556777788
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCC
Q 048080 84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 133 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 133 (223)
+|+.+++..+ +.......|.+. .++.+.+.. .++.+....|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 8888888665 554555667776 778777765 4444555666666655
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.44 E-value=7.2e-09 Score=72.76 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=84.5
Q ss_pred CCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEE
Q 048080 10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLS 89 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 89 (223)
..|...++++|.+. .+|+.+....+.+++|++++|.++ ..|..+..|+.|+.|+++.|.+. ..|..+..|.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34566799999998 999988887778899999999999 67777999999999999999998 6677777799999999
Q ss_pred cccCcccccCCccccCCCCCCEEECCCCccccccc
Q 048080 90 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 124 (223)
Q Consensus 90 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 124 (223)
..+|.+.....+.|.. +..-..+++++.+.+..+
T Consensus 130 s~~na~~eid~dl~~s-~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 130 SPENARAEIDVDLFYS-SLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCCCccccCcHHHhcc-ccHHHHHhcCCcccccCc
Confidence 9999887333332221 222233445555554444
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.42 E-value=1.7e-07 Score=85.60 Aligned_cols=107 Identities=30% Similarity=0.407 Sum_probs=69.0
Q ss_pred CCCCeeecccCc--cccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080 10 QNLILLTTCKNK--LSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH 87 (223)
Q Consensus 10 ~~L~~L~l~~n~--i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 87 (223)
+.|+.|-+..|. +. .++..+|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..+. ..|..+.++..|.+
T Consensus 545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 356666666665 44 666666666677777777766555566666667777777777777666 56666677777777
Q ss_pred EEcccCcccccCCccccCCCCCCEEECCCCc
Q 048080 88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNN 118 (223)
Q Consensus 88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 118 (223)
||+..+.-...+|.....+++|++|.+....
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 7777665444445555556677777665543
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.41 E-value=1.6e-07 Score=85.87 Aligned_cols=129 Identities=24% Similarity=0.267 Sum_probs=99.2
Q ss_pred CCCCeeecccCccccCCChhhhhccCCceEEEccCCc--ccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080 10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNL--LSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH 87 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 87 (223)
...+.+.+.+|.+. .++...- .+.|++|-+..|. +.......|..|+.|+.|||++|.=-+..|..+++|-+|++
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 45677777777776 5554332 2246788888885 55455556888999999999988766688888899999999
Q ss_pred EEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCc
Q 048080 88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH 142 (223)
Q Consensus 88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~ 142 (223)
|++++..+. .+|..+..+..|.+||+..+.-...+|.....+++|++|.+-.-.
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999888 778888999999999998887665667777778888888776544
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.37 E-value=8.2e-08 Score=77.02 Aligned_cols=141 Identities=19% Similarity=0.161 Sum_probs=88.6
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhh---hccCCceEEEccCCcccccCC-------------cCCCCCCCCCeEecc
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLL---RIITRSVLLDLFDNLLSGHFP-------------AEVGNLKHLVSLDIS 67 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~---~~~~~l~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~l~ 67 (223)
+++..++.|++|+||+|.+....++.+. +....|+.|+|.+|.+...-. ...+.-+.|+.+...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 3455667899999999988755554433 335667888888887762211 122344678888888
Q ss_pred CccccccC----CccccCCCCCcEEEcccCccccc----CCccccCCCCCCEEECCCCccccc----cchhhhCCCCCCE
Q 048080 68 SNMFSGEI----PTTLGGCTSLEHLSMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSGH----IPQYLENLSFLSF 135 (223)
Q Consensus 68 ~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~ 135 (223)
+|++.... ...|...+.|+.+.++.|.+... .-.+|..++.|++|||.+|-++.. +..++..++.|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 88776322 22355566777777777766521 113456667777777777777632 3345666677777
Q ss_pred EeccCCcCc
Q 048080 136 LNLSYNHFE 144 (223)
Q Consensus 136 l~l~~N~l~ 144 (223)
++++++.+.
T Consensus 246 l~l~dcll~ 254 (382)
T KOG1909|consen 246 LNLGDCLLE 254 (382)
T ss_pred ecccccccc
Confidence 777776665
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=8.1e-07 Score=50.41 Aligned_cols=15 Identities=53% Similarity=0.503 Sum_probs=5.6
Q ss_pred hCCCCCCEEeccCCc
Q 048080 128 ENLSFLSFLNLSYNH 142 (223)
Q Consensus 128 ~~l~~L~~l~l~~N~ 142 (223)
..+++|+.|++++|+
T Consensus 21 ~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 21 SNLPNLETLNLSNNP 35 (44)
T ss_dssp TTCTTSSEEEETSSC
T ss_pred hCCCCCCEEEecCCC
Confidence 333333333333333
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.22 E-value=2.6e-06 Score=63.77 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=80.0
Q ss_pred eEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080 38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117 (223)
Q Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 117 (223)
+.++|.+..+... ..--..+.....+||+.|.+... +.|..+++|.+|.+++|+|+.+-|.--.-++.|+.|.|.+|
T Consensus 22 ~e~~LR~lkip~i-enlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVI-ENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccch-hhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 6688888877632 22112345678899999998633 56889999999999999999777765555688999999999
Q ss_pred ccccc-cchhhhCCCCCCEEeccCCcCcc
Q 048080 118 NLSGH-IPQYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 118 ~l~~~-~p~~~~~l~~L~~l~l~~N~l~~ 145 (223)
++... .-+.+..+|+|+.|.+-+|+.+.
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhc
Confidence 98743 12347788999999999998864
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=2.1e-06 Score=48.71 Aligned_cols=39 Identities=36% Similarity=0.598 Sum_probs=32.5
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccc
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 122 (223)
++|++|++++|+++ .+|..+.++++|+.|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 47999999999999 5566699999999999999999843
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=4.5e-07 Score=72.85 Aligned_cols=160 Identities=22% Similarity=0.205 Sum_probs=83.5
Q ss_pred CCCCCCCeeecccCccccCCChh------------hhhccCCceEEEccCCcccccC----CcCCCCCCCCCeEeccCcc
Q 048080 7 GNCQNLILLTTCKNKLSGTVPRQ------------LLRIITRSVLLDLFDNLLSGHF----PAEVGNLKHLVSLDISSNM 70 (223)
Q Consensus 7 ~~l~~L~~L~l~~n~i~~~~p~~------------~~~~~~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~ 70 (223)
..++.|++|.|.+|.+...--.. .....+.|+.++..+|.+.... ...|...+.|+.+.++.|.
T Consensus 117 ~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~ 196 (382)
T KOG1909|consen 117 SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG 196 (382)
T ss_pred HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc
Confidence 34566677777776664211111 1122345566666666655221 1234555666777777666
Q ss_pred cccc----CCccccCCCCCcEEEcccCccccc----CCccccCCCCCCEEECCCCccccccchh----hh-CCCCCCEEe
Q 048080 71 FSGE----IPTTLGGCTSLEHLSMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSGHIPQY----LE-NLSFLSFLN 137 (223)
Q Consensus 71 l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~----~~-~l~~L~~l~ 137 (223)
|... ....|..+++|+.|||.+|-++.. ...++..++.|+.++++++.+...-..+ +. ..|+|..+.
T Consensus 197 I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~ 276 (382)
T KOG1909|consen 197 IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLE 276 (382)
T ss_pred ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceec
Confidence 5421 122455666777777777766532 2234555666777777776665432222 21 245667777
Q ss_pred ccCCcCcccCCc-----hhhhcCCcceeecCCCC
Q 048080 138 LSYNHFEGKVPI-----EAIFNSTKGISLVGNEN 166 (223)
Q Consensus 138 l~~N~l~~~~~~-----~~~~~~l~~l~~~~n~~ 166 (223)
+.+|.++..-.. ..-.+.+..+.+++|..
T Consensus 277 l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 277 LAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 777766532110 01134455566666654
No 52
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.98 E-value=3.2e-05 Score=54.37 Aligned_cols=111 Identities=13% Similarity=0.192 Sum_probs=72.8
Q ss_pred CCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCcccc
Q 048080 25 TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLS 104 (223)
Q Consensus 25 ~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 104 (223)
.+++..|.....|+.+.+.+ .+..+....|.++++|+.+.+..+ +..+....|.++.+++.+.+.+ .+.......|.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 46777788887889999885 567678889999999999999885 7767777899998999999976 55546667788
Q ss_pred CCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080 105 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY 140 (223)
Q Consensus 105 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~ 140 (223)
.+++++.+++..+ +.......|... .++.+.+..
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 8999999999876 665666677777 888888765
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=2.5e-05 Score=65.35 Aligned_cols=117 Identities=17% Similarity=0.232 Sum_probs=71.4
Q ss_pred CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCc-cccccCCccccCCCCCc
Q 048080 8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN-MFSGEIPTTLGGCTSLE 86 (223)
Q Consensus 8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 86 (223)
.+.+++.|++++|.++ .+| ..+..|+.|.++++.--...|+.+ ..+|+.|++++| .+. ..|. +|+
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVR 115 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccc
Confidence 4678899999999888 888 356678999998854333566554 257889999887 444 3332 355
Q ss_pred EEEcccCccc--ccCCccccCC------------------CCCCEEECCCCccccccchhhhCCCCCCEEeccCC
Q 048080 87 HLSMQDNSFT--GSIPSTLSSL------------------KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141 (223)
Q Consensus 87 ~L~L~~N~l~--~~~~~~~~~l------------------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N 141 (223)
.|+++.+... +.+|..+..| ++|++|++++|... ..|..+. .+|+.|+++.|
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 5555554421 1233222211 36777777777655 3333222 36777777655
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=9.4e-06 Score=72.70 Aligned_cols=135 Identities=23% Similarity=0.225 Sum_probs=92.7
Q ss_pred CCCCeeecccCccc-cCCChhhhhccCCceEEEccCCcccccC-CcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080 10 QNLILLTTCKNKLS-GTVPRQLLRIITRSVLLDLFDNLLSGHF-PAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH 87 (223)
Q Consensus 10 ~~L~~L~l~~n~i~-~~~p~~~~~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 87 (223)
.+|++|++++...- ..-|..++..+|.|+.|.+.+-.+.... ..-..++++|..||+++.+++.. ..++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46888888876543 1344566777888899998887665221 23345778999999999988855 56778888888
Q ss_pred EEcccCcccc-cCCccccCCCCCCEEECCCCcccccc--c----hhhhCCCCCCEEeccCCcCccc
Q 048080 88 LSMQDNSFTG-SIPSTLSSLKSITELDLSRNNLSGHI--P----QYLENLSFLSFLNLSYNHFEGK 146 (223)
Q Consensus 88 L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~--p----~~~~~l~~L~~l~l~~N~l~~~ 146 (223)
|.+.+=.+.. ..-..+.++++|++||+|........ . +.-..+|.|+.||.+++.+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 8877766552 11124667889999999876554221 1 1233578999999998877653
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.69 E-value=2.5e-05 Score=61.34 Aligned_cols=141 Identities=20% Similarity=0.180 Sum_probs=98.4
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhh---ccCCceEEEccCCcccccCCcCC-------------CCCCCCCeEecc
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLR---IITRSVLLDLFDNLLSGHFPAEV-------------GNLKHLVSLDIS 67 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~---~~~~l~~L~L~~n~l~~~~~~~~-------------~~l~~L~~L~l~ 67 (223)
+++..|+.|+.++++.|.+..+.|+.+.. ....|..|.+++|.+..+-...+ .+-+.|++....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 35678899999999999998777875543 34567889999998763322222 345778999999
Q ss_pred CccccccCCc-----cccCCCCCcEEEcccCcccccCCc-----cccCCCCCCEEECCCCccccc----cchhhhCCCCC
Q 048080 68 SNMFSGEIPT-----TLGGCTSLEHLSMQDNSFTGSIPS-----TLSSLKSITELDLSRNNLSGH----IPQYLENLSFL 133 (223)
Q Consensus 68 ~n~l~~~~~~-----~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L 133 (223)
.|++.. .+. .+..-..|+.+.+..|.+.-.-.. .+..+.+|++|||.+|-++.. ...++..++.|
T Consensus 166 rNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 998873 222 233346788999998887622111 234457899999999988743 34566778888
Q ss_pred CEEeccCCcCcc
Q 048080 134 SFLNLSYNHFEG 145 (223)
Q Consensus 134 ~~l~l~~N~l~~ 145 (223)
+.|.+.++-++.
T Consensus 245 rEL~lnDClls~ 256 (388)
T COG5238 245 RELRLNDCLLSN 256 (388)
T ss_pred hhccccchhhcc
Confidence 999888887764
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=5e-05 Score=68.15 Aligned_cols=116 Identities=17% Similarity=0.121 Sum_probs=86.1
Q ss_pred CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc-cCCccccCCCCCc
Q 048080 8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG-EIPTTLGGCTSLE 86 (223)
Q Consensus 8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 86 (223)
-+|+|+.|.+++-.+...--..++...++|..||+++.+++.. ..++.+++|+.|.+.+=.+.. ..-..+.+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 4689999999998875322235667788999999999999844 556789999999888777653 1222567899999
Q ss_pred EEEcccCcccccC------CccccCCCCCCEEECCCCccccccch
Q 048080 87 HLSMQDNSFTGSI------PSTLSSLKSITELDLSRNNLSGHIPQ 125 (223)
Q Consensus 87 ~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~p~ 125 (223)
.||+|..+..... -+.-..+|.|+.||.+++.+.+..-+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 9999988655221 12234589999999999988755433
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.50 E-value=7.8e-05 Score=57.99 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=25.3
Q ss_pred CCCCeEeccCccccccCCccccCCCCCcEEEcccC--cccccCCccccCCCCCCEEECCCCccc
Q 048080 59 KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN--SFTGSIPSTLSSLKSITELDLSRNNLS 120 (223)
Q Consensus 59 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (223)
..|+.+.+.+..++.. ..|..|++|+.|.+|.| +..+..+.....+++|+++++++|++.
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444444444443322 23344445555555555 333222222223345555555555544
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=9.4e-05 Score=58.89 Aligned_cols=85 Identities=25% Similarity=0.213 Sum_probs=48.5
Q ss_pred CCCCeeecccCccccCCCh--hhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCc-cccCCCCCc
Q 048080 10 QNLILLTTCKNKLSGTVPR--QLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT-TLGGCTSLE 86 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p~--~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~ 86 (223)
+.++.+|+.+|.|+ .-.+ .+...++.|++|+++.|.+...+..--..+.+|++|.|.+..+.-.... .+..++.++
T Consensus 71 ~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 45667777777776 3322 2334456667777777777633322113556677777766655432222 245566666
Q ss_pred EEEcccCcc
Q 048080 87 HLSMQDNSF 95 (223)
Q Consensus 87 ~L~L~~N~l 95 (223)
.|++|.|++
T Consensus 150 elHmS~N~~ 158 (418)
T KOG2982|consen 150 ELHMSDNSL 158 (418)
T ss_pred hhhhccchh
Confidence 777776643
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=3.9e-06 Score=66.51 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=60.3
Q ss_pred CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcc-ccccCC-ccccCCCCCcEE
Q 048080 11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNM-FSGEIP-TTLGGCTSLEHL 88 (223)
Q Consensus 11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L 88 (223)
.|+++|+++..|+..--..+......|+.|.+.++.+..-+...++.-.+|+.|+++++. ++.... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 488888888888744334555556667888888888876666667777788888888763 332211 135677888888
Q ss_pred EcccCcccc
Q 048080 89 SMQDNSFTG 97 (223)
Q Consensus 89 ~L~~N~l~~ 97 (223)
+++.+.++.
T Consensus 266 NlsWc~l~~ 274 (419)
T KOG2120|consen 266 NLSWCFLFT 274 (419)
T ss_pred CchHhhccc
Confidence 888887653
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=4.7e-05 Score=60.54 Aligned_cols=88 Identities=28% Similarity=0.358 Sum_probs=48.9
Q ss_pred hccCCceEEEccCCcccc--cCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCc-cccCCCC
Q 048080 32 RIITRSVLLDLFDNLLSG--HFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPS-TLSSLKS 108 (223)
Q Consensus 32 ~~~~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~ 108 (223)
...+.++++||.+|.|+. .+...+.+|+.|++|+++.|.+...+..--..+.+|++|-|.+..+.+.-.. .+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 334555667777777662 2223345667777777777776643322112445667777666655533222 3455666
Q ss_pred CCEEECCCCcc
Q 048080 109 ITELDLSRNNL 119 (223)
Q Consensus 109 L~~L~L~~N~l 119 (223)
++.|.++.|.+
T Consensus 148 vtelHmS~N~~ 158 (418)
T KOG2982|consen 148 VTELHMSDNSL 158 (418)
T ss_pred hhhhhhccchh
Confidence 66666666633
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.0001 Score=57.28 Aligned_cols=100 Identities=23% Similarity=0.283 Sum_probs=66.7
Q ss_pred CCceEEEccCCcccccCCcCCCCCCCCCeEeccCc--cccccCCccccCCCCCcEEEcccCcccccCCcc---ccCCCCC
Q 048080 35 TRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN--MFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPST---LSSLKSI 109 (223)
Q Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L 109 (223)
..++.|.+.+..++.. ..|..|++|++|.++.| .+.+-.+-....+++|+++++++|++.. +.+ +..+.+|
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 3445666666666522 34667888999999999 5554444444556899999999998872 333 3456678
Q ss_pred CEEECCCCccccc---cchhhhCCCCCCEEec
Q 048080 110 TELDLSRNNLSGH---IPQYLENLSFLSFLNL 138 (223)
Q Consensus 110 ~~L~L~~N~l~~~---~p~~~~~l~~L~~l~l 138 (223)
..|++.+|..+.. .-..|.-+++|++||-
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 8889988877642 2245667788877754
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=7.9e-06 Score=64.22 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=56.5
Q ss_pred CCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCC-ccccCCCCCcEE
Q 048080 10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIP-TTLGGCTSLEHL 88 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 88 (223)
.+.+.|+..++.+. +|. +...++.|+.|.|+-|.|+..-| |..+++|++|+|..|.|..+.. ..+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34555666666665 442 45556666777777777764332 4566677777777776664322 134566666666
Q ss_pred EcccCcccccCCc-----cccCCCCCCEEE
Q 048080 89 SMQDNSFTGSIPS-----TLSSLKSITELD 113 (223)
Q Consensus 89 ~L~~N~l~~~~~~-----~~~~l~~L~~L~ 113 (223)
.|..|.-.+.-+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666665544332 133445555554
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.17 E-value=0.0021 Score=54.08 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=72.9
Q ss_pred cCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccC-cccccCCccccCCCCCCEE
Q 048080 34 ITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN-SFTGSIPSTLSSLKSITEL 112 (223)
Q Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 112 (223)
...++.|++++|.+. .+| . -..+|++|.++++.--...|+.+. .+|+.|++++| .+. .+|. +|+.|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceE
Confidence 366799999999888 445 2 235799999988543336666553 68999999998 555 4554 46666
Q ss_pred ECCCCccc--cccchhhhCC------------------CCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080 113 DLSRNNLS--GHIPQYLENL------------------SFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164 (223)
Q Consensus 113 ~L~~N~l~--~~~p~~~~~l------------------~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n 164 (223)
++.+|... +.+|..+..+ ++|+.|++++|.... .|. ....+++.+.+..+
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~-~LP~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE-KLPESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccc-cccccCcEEEeccc
Confidence 67665532 2344433332 368888888877542 221 23355666665443
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=5.9e-05 Score=60.00 Aligned_cols=134 Identities=20% Similarity=0.175 Sum_probs=69.9
Q ss_pred CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCC--cCCCCCCCCCeEeccCccccccCCcc-ccCC-
Q 048080 7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP--AEVGNLKHLVSLDISSNMFSGEIPTT-LGGC- 82 (223)
Q Consensus 7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l- 82 (223)
..+.+|+.|.+.++++.+.+-..+... ..|+.|+++.+.--.... -.+..++.|+.|+++.+.+....-.. ..+.
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 456788899999998876555555443 445889988864221221 13567788888888888765322111 1111
Q ss_pred CCCcEEEcccCc--ccccCCcc-ccCCCCCCEEECCCCc-cccccchhhhCCCCCCEEeccCC
Q 048080 83 TSLEHLSMQDNS--FTGSIPST-LSSLKSITELDLSRNN-LSGHIPQYLENLSFLSFLNLSYN 141 (223)
Q Consensus 83 ~~L~~L~L~~N~--l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~l~l~~N 141 (223)
+.|..|++++.. +....-++ -...++|.+|||++|. ++...-..|..++.|+++.++.+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 345555555432 11111111 1234555555555432 33222233444555555555444
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=3.7e-05 Score=60.59 Aligned_cols=100 Identities=24% Similarity=0.236 Sum_probs=76.1
Q ss_pred cCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCC-ccccCCCCCCEE
Q 048080 34 ITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIP-STLSSLKSITEL 112 (223)
Q Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L 112 (223)
+.+...|+.-++.++.+- ....|+.|+.|.|+-|.|+.. ..|..+.+|+.|+|..|.|...-. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 445577888888877432 235789999999999999866 347889999999999999873311 246789999999
Q ss_pred ECCCCccccccc-----hhhhCCCCCCEEe
Q 048080 113 DLSRNNLSGHIP-----QYLENLSFLSFLN 137 (223)
Q Consensus 113 ~L~~N~l~~~~p-----~~~~~l~~L~~l~ 137 (223)
.|..|.-.|.-+ ..+..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999998876644 3466788888876
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.46 E-value=0.0016 Score=30.84 Aligned_cols=18 Identities=50% Similarity=0.717 Sum_probs=8.7
Q ss_pred CCEEECCCCccccccchhh
Q 048080 109 ITELDLSRNNLSGHIPQYL 127 (223)
Q Consensus 109 L~~L~L~~N~l~~~~p~~~ 127 (223)
|++||+++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 344333
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.36 E-value=0.0033 Score=30.99 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=18.7
Q ss_pred CCCCCeeecccCccccCCChhhhh
Q 048080 9 CQNLILLTTCKNKLSGTVPRQLLR 32 (223)
Q Consensus 9 l~~L~~L~l~~n~i~~~~p~~~~~ 32 (223)
+++|+.|++++|++. .+|++.|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888999999988 88887765
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.36 E-value=0.0033 Score=30.99 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=18.7
Q ss_pred CCCCCeeecccCccccCCChhhhh
Q 048080 9 CQNLILLTTCKNKLSGTVPRQLLR 32 (223)
Q Consensus 9 l~~L~~L~l~~n~i~~~~p~~~~~ 32 (223)
+++|+.|++++|++. .+|++.|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888999999988 88887765
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.26 E-value=0.002 Score=30.51 Aligned_cols=19 Identities=53% Similarity=0.770 Sum_probs=9.4
Q ss_pred CcEEEcccCcccccCCcccc
Q 048080 85 LEHLSMQDNSFTGSIPSTLS 104 (223)
Q Consensus 85 L~~L~L~~N~l~~~~~~~~~ 104 (223)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3343343
No 70
>PF15102 TMEM154: TMEM154 protein family
Probab=95.86 E-value=0.01 Score=42.13 Aligned_cols=32 Identities=31% Similarity=0.708 Sum_probs=15.2
Q ss_pred eeehhHHHHHH-HHHHHHHHHHHHHHhccCccc
Q 048080 179 LIKVVIQVIVL-CLILVVFFIVVYGRRRRSTQK 210 (223)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 210 (223)
++.++|+.+++ ++++++++++.++||||.+++
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~ 90 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQE 90 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccCCC
Confidence 55555553333 334444444444455555444
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.63 E-value=0.00016 Score=55.71 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=50.0
Q ss_pred ceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080 37 SVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116 (223)
Q Consensus 37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 116 (223)
.+.||++.|.+. .....|.-++.+..|+++.|.+. ..|..+..+..+..+++..|.++ ..|.+++..+.++++++-+
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 356666666655 34445555666666666666665 55666666666666666666666 5566666666666666666
Q ss_pred Cccc
Q 048080 117 NNLS 120 (223)
Q Consensus 117 N~l~ 120 (223)
|.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 6654
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.48 E-value=0.0087 Score=26.33 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=8.1
Q ss_pred CCCCeeecccCccccCCC
Q 048080 10 QNLILLTTCKNKLSGTVP 27 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p 27 (223)
++|+.|++++|+++ ++|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 35666777777665 544
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.37 E-value=0.016 Score=46.04 Aligned_cols=110 Identities=23% Similarity=0.247 Sum_probs=56.9
Q ss_pred CCceEEEccCCcccccCCcC----CCCCCCCCeEeccCccccccCCccc-------------cCCCCCcEEEcccCcccc
Q 048080 35 TRSVLLDLFDNLLSGHFPAE----VGNLKHLVSLDISSNMFSGEIPTTL-------------GGCTSLEHLSMQDNSFTG 97 (223)
Q Consensus 35 ~~l~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~-------------~~l~~L~~L~L~~N~l~~ 97 (223)
+.++..+||+|.+....|.. ++.-+.|.+|.|++|.+.-+....+ .+-+.|++.....|++..
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 44566666666665444432 2344556666666665542211111 123456666666666542
Q ss_pred cCCc-----cccCCCCCCEEECCCCccccc-----cchhhhCCCCCCEEeccCCcCcc
Q 048080 98 SIPS-----TLSSLKSITELDLSRNNLSGH-----IPQYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 98 ~~~~-----~~~~l~~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~l~l~~N~l~~ 145 (223)
.+. .|..-..|+.+.+..|.+... .--.+..+.+|+.||+.+|-++-
T Consensus 172 -gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 172 -GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred -CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 111 122223566666666666522 11123456788888888888764
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.17 E-value=0.00039 Score=53.59 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=55.8
Q ss_pred cCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCC
Q 048080 53 AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 132 (223)
Q Consensus 53 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 132 (223)
..+......+.||++.|++. .....|+-+..+..||++.|.+. ..|..++....+..+++..|..+ ..|.++...+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 33445556666677766665 34445666666666777766666 55555666666666666666666 55666666666
Q ss_pred CCEEeccCCcCc
Q 048080 133 LSFLNLSYNHFE 144 (223)
Q Consensus 133 L~~l~l~~N~l~ 144 (223)
++.++..+|++.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 776666666653
No 75
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=95.14 E-value=0.011 Score=32.22 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=4.8
Q ss_pred eehhHHHHHHHH
Q 048080 180 IKVVIQVIVLCL 191 (223)
Q Consensus 180 ~~~~~~~~~~~~ 191 (223)
.+++++++++++
T Consensus 15 ~~VvVPV~vI~~ 26 (40)
T PF08693_consen 15 VGVVVPVGVIII 26 (40)
T ss_pred EEEEechHHHHH
Confidence 334444444333
No 76
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=95.10 E-value=0.019 Score=39.84 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=9.9
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHhccC
Q 048080 180 IKVVIQVIVLCLILVVFFIVVYGRRRRS 207 (223)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (223)
.++++++++.+++++++++++.+|+||+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444333333333333333333
No 77
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=94.93 E-value=0.05 Score=29.15 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=6.0
Q ss_pred ehhHHHHHHHHHHHH
Q 048080 181 KVVIQVIVLCLILVV 195 (223)
Q Consensus 181 ~~~~~~~~~~~~~~~ 195 (223)
++++++++.++++++
T Consensus 7 aIIv~V~vg~~iiii 21 (38)
T PF02439_consen 7 AIIVAVVVGMAIIII 21 (38)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444443333333
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.58 E-value=0.034 Score=27.20 Aligned_cols=16 Identities=50% Similarity=0.644 Sum_probs=9.4
Q ss_pred CCCCEEECCCCccccc
Q 048080 107 KSITELDLSRNNLSGH 122 (223)
Q Consensus 107 ~~L~~L~L~~N~l~~~ 122 (223)
++|++|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666643
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.58 E-value=0.034 Score=27.20 Aligned_cols=16 Identities=50% Similarity=0.644 Sum_probs=9.4
Q ss_pred CCCCEEECCCCccccc
Q 048080 107 KSITELDLSRNNLSGH 122 (223)
Q Consensus 107 ~~L~~L~L~~N~l~~~ 122 (223)
++|++|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666643
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=94.18 E-value=0.031 Score=56.61 Aligned_cols=39 Identities=33% Similarity=0.314 Sum_probs=27.0
Q ss_pred ECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchh
Q 048080 113 DLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEA 151 (223)
Q Consensus 113 ~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~ 151 (223)
||++|+|+.+.+..|..+++|+.|+|++|++.|.|...+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~W 39 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLAR 39 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHH
Confidence 466777776666667777777777777777777776554
No 81
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=94.02 E-value=0.07 Score=40.43 Aligned_cols=27 Identities=26% Similarity=0.611 Sum_probs=11.6
Q ss_pred ceeeehhHHHHHHHHHHHHHHHHHHHH
Q 048080 177 SILIKVVIQVIVLCLILVVFFIVVYGR 203 (223)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (223)
.++++++.++++++++++++.++.+||
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 344444444444444444444443344
No 82
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=94.00 E-value=0.07 Score=42.22 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccc
Q 048080 184 IQVIVLCLILVVFFIVVYGRRRRSTQKSS 212 (223)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (223)
+.|..+++++++++.+|.+||||+..+..
T Consensus 265 alvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 265 ALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 33333444444455566666666666543
No 83
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=93.62 E-value=0.026 Score=40.40 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=16.2
Q ss_pred ceeeehhHHHHHHHHHHHHHHHHHHHHhccC
Q 048080 177 SILIKVVIQVIVLCLILVVFFIVVYGRRRRS 207 (223)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (223)
..++++++++.+.++++++++++++++|+|+
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence 4566777766555554444444444444443
No 84
>PTZ00370 STEVOR; Provisional
Probab=93.10 E-value=0.075 Score=42.15 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcccc
Q 048080 186 VIVLCLILVVFFIVVYGRRRRSTQKS 211 (223)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (223)
|..+++++++++.+|.+||||+..+.
T Consensus 263 vllil~vvliilYiwlyrrRK~swkh 288 (296)
T PTZ00370 263 VLLILAVVLIILYIWLYRRRKNSWKH 288 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 33334444445555666666666554
No 85
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=92.90 E-value=0.068 Score=43.21 Aligned_cols=17 Identities=18% Similarity=0.516 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhccCc
Q 048080 192 ILVVFFIVVYGRRRRST 208 (223)
Q Consensus 192 ~~~~~~~~~~~~~~~~~ 208 (223)
++++++++++|+|||++
T Consensus 270 LIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 270 LIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33334444444444333
No 86
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=92.05 E-value=0.044 Score=43.98 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcc
Q 048080 183 VIQVIVLCLILVVFFIVVYGRRRRSTQ 209 (223)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (223)
+++++++++++++++++||+|||+-+.
T Consensus 152 aVVI~~iLLIA~iIa~icyrrkR~GK~ 178 (290)
T PF05454_consen 152 AVVIAAILLIAGIIACICYRRKRKGKM 178 (290)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 333344444444455555554444433
No 87
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=91.74 E-value=0.29 Score=31.46 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccc
Q 048080 184 IQVIVLCLILVVFFIVVYGRRRRSTQKSS 212 (223)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (223)
..++++++++++++++.++++||+.+++-
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrPI 65 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRPI 65 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 33444444555555555555555555443
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.59 E-value=0.073 Score=25.45 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=6.1
Q ss_pred CCCEEECCCCcccc
Q 048080 108 SITELDLSRNNLSG 121 (223)
Q Consensus 108 ~L~~L~L~~N~l~~ 121 (223)
+|++|+|++|.++.
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 45555555555543
No 89
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=91.31 E-value=0.11 Score=34.67 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=4.8
Q ss_pred eeeehhHHHHH
Q 048080 178 ILIKVVIQVIV 188 (223)
Q Consensus 178 ~~~~~~~~~~~ 188 (223)
.+.++++++++
T Consensus 67 aiagi~vg~~~ 77 (96)
T PTZ00382 67 AIAGISVAVVA 77 (96)
T ss_pred cEEEEEeehhh
Confidence 34444444443
No 90
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=91.16 E-value=0.14 Score=41.75 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCcceeeehhHHHHHHHHHHHHHHHHHHHHh
Q 048080 164 NENLCGGSRKSKFSILIKVVIQVIVLCLILVVFFIVVYGRR 204 (223)
Q Consensus 164 n~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (223)
....|..... ..++.+++|++.+++++++++++++.||
T Consensus 260 ~a~~C~~D~~---~~~vPIaVG~~La~lvlivLiaYli~Rr 297 (306)
T PF01299_consen 260 TAEECSSDDT---SDLVPIAVGAALAGLVLIVLIAYLIGRR 297 (306)
T ss_pred ChhcCCcCCc---cchHHHHHHHHHHHHHHHHHHhheeEec
Confidence 3445554332 3455555555544444444444333333
No 91
>PTZ00046 rifin; Provisional
Probab=89.78 E-value=0.24 Score=40.80 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhccCccc
Q 048080 193 LVVFFIVVYGRRRRSTQK 210 (223)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~ 210 (223)
+++++++..|+|||++.+
T Consensus 330 IMvIIYLILRYRRKKKMk 347 (358)
T PTZ00046 330 IMVIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHHHhhhcchhH
Confidence 334444444555554433
No 92
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=89.61 E-value=0.25 Score=40.57 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhccCcc
Q 048080 193 LVVFFIVVYGRRRRSTQ 209 (223)
Q Consensus 193 ~~~~~~~~~~~~~~~~~ 209 (223)
+++++++..|+|||++.
T Consensus 325 IMvIIYLILRYRRKKKM 341 (353)
T TIGR01477 325 IMVIIYLILRYRRKKKM 341 (353)
T ss_pred HHHHHHHHHHhhhcchh
Confidence 33444444455554443
No 93
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=88.96 E-value=0.089 Score=35.57 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=0.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 048080 184 IQVIVLCLILVVFFIVVYGRRRR 206 (223)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~ 206 (223)
|+++++++.+++++-+||+|||.
T Consensus 29 IGiL~VILgiLLliGCWYckRRS 51 (118)
T PF14991_consen 29 IGILIVILGILLLIGCWYCKRRS 51 (118)
T ss_dssp SS---------------------
T ss_pred ceeHHHHHHHHHHHhheeeeecc
Confidence 44444445555566666666653
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.86 E-value=0.33 Score=23.87 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=9.1
Q ss_pred CCCCeeecccCccc
Q 048080 10 QNLILLTTCKNKLS 23 (223)
Q Consensus 10 ~~L~~L~l~~n~i~ 23 (223)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 95
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.66 E-value=0.033 Score=42.13 Aligned_cols=83 Identities=22% Similarity=0.155 Sum_probs=50.0
Q ss_pred CCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccC-Ccccc-CCCCCCEEECCCC-ccccccchhhhCCCCCCE
Q 048080 59 KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSI-PSTLS-SLKSITELDLSRN-NLSGHIPQYLENLSFLSF 135 (223)
Q Consensus 59 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~-~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~ 135 (223)
..++.++-++..|..+.-+.+.++++++.|.+.++.--+-. -+.++ ..++|+.|++++| +||..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34667777777777666666777777777777666432110 01111 2367888888865 455444445666777777
Q ss_pred EeccCC
Q 048080 136 LNLSYN 141 (223)
Q Consensus 136 l~l~~N 141 (223)
|.+.+=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 766553
No 96
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=87.72 E-value=1.2 Score=30.21 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 048080 188 VLCLILVV 195 (223)
Q Consensus 188 ~~~~~~~~ 195 (223)
++++++.+
T Consensus 8 ~llLll~l 15 (107)
T PF15330_consen 8 ALLLLLSL 15 (107)
T ss_pred HHHHHHHH
Confidence 33333333
No 97
>PF15050 SCIMP: SCIMP protein
Probab=87.37 E-value=0.72 Score=31.58 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 048080 186 VIVLCLILVVFFI 198 (223)
Q Consensus 186 ~~~~~~~~~~~~~ 198 (223)
++++.+++.++++
T Consensus 16 II~vS~~lglIly 28 (133)
T PF15050_consen 16 IILVSVVLGLILY 28 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 98
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=87.31 E-value=0.22 Score=30.16 Aligned_cols=7 Identities=29% Similarity=0.748 Sum_probs=0.4
Q ss_pred HHHHHHh
Q 048080 198 IVVYGRR 204 (223)
Q Consensus 198 ~~~~~~~ 204 (223)
+++|+.|
T Consensus 31 f~iyR~r 37 (64)
T PF01034_consen 31 FLIYRMR 37 (64)
T ss_dssp ------S
T ss_pred HHHHHHH
Confidence 3333333
No 99
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.00 E-value=0.42 Score=23.49 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=12.9
Q ss_pred CCCCeeecccCccccCCCh
Q 048080 10 QNLILLTTCKNKLSGTVPR 28 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p~ 28 (223)
++|+.|+.++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777777 7775
No 100
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.38 E-value=0.21 Score=42.77 Aligned_cols=129 Identities=26% Similarity=0.177 Sum_probs=63.3
Q ss_pred CCCCCeeecccCccccCCC-hhhhhccCCceEEEccCC-cccccCC----cCCCCCCCCCeEeccCcc-ccccCCcccc-
Q 048080 9 CQNLILLTTCKNKLSGTVP-RQLLRIITRSVLLDLFDN-LLSGHFP----AEVGNLKHLVSLDISSNM-FSGEIPTTLG- 80 (223)
Q Consensus 9 l~~L~~L~l~~n~i~~~~p-~~~~~~~~~l~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~- 80 (223)
++.|+.+.+....-..... ..+....+.|++|+++++ ......+ .....+.+|+.|+++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4566666666553221211 123444566677777763 1111111 122345677777777776 4433222222
Q ss_pred CCCCCcEEEcccCc-ccccCCc-cccCCCCCCEEECCCCccccc--cchhhhCCCCCCEEe
Q 048080 81 GCTSLEHLSMQDNS-FTGSIPS-TLSSLKSITELDLSRNNLSGH--IPQYLENLSFLSFLN 137 (223)
Q Consensus 81 ~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~l~ 137 (223)
.+++|+.|.+.++. ++..--. ....++.|++|+++++...+. +......+++++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 26677777766555 4422111 123456678888776654311 222233455554443
No 101
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=85.68 E-value=0.0057 Score=52.84 Aligned_cols=141 Identities=29% Similarity=0.282 Sum_probs=69.8
Q ss_pred CCCCCCCCCeeecccCccccCCChhhh---hc-cCCceEEEccCCcccccC----CcCCCCCCCCCeEeccCccccc---
Q 048080 5 SLGNCQNLILLTTCKNKLSGTVPRQLL---RI-ITRSVLLDLFDNLLSGHF----PAEVGNLKHLVSLDISSNMFSG--- 73 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~---~~-~~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~--- 73 (223)
++.....|+.|++++|.+.+.--..+. .. ...+++|++..|.++..- ...+.....++.++++.|.+..
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 445566677777777777531111111 11 133455666666555322 2233445667777777776631
Q ss_pred -cCCccc----cCCCCCcEEEcccCcccccCC----ccccCCCC-CCEEECCCCccccc----cchhhhCC-CCCCEEec
Q 048080 74 -EIPTTL----GGCTSLEHLSMQDNSFTGSIP----STLSSLKS-ITELDLSRNNLSGH----IPQYLENL-SFLSFLNL 138 (223)
Q Consensus 74 -~~~~~~----~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~-L~~L~L~~N~l~~~----~p~~~~~l-~~L~~l~l 138 (223)
..+..+ ....++++|.++++.++.... ..+...++ +..+++.+|++... ....+..+ ..++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 111222 235567777777776652111 12233333 45566666666532 12223333 45566666
Q ss_pred cCCcCcc
Q 048080 139 SYNHFEG 145 (223)
Q Consensus 139 ~~N~l~~ 145 (223)
+.|.+..
T Consensus 270 ~~nsi~~ 276 (478)
T KOG4308|consen 270 SRNSITE 276 (478)
T ss_pred hcCCccc
Confidence 6666654
No 102
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=85.66 E-value=2.7 Score=25.63 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 048080 190 CLILVVFFIVVYGR 203 (223)
Q Consensus 190 ~~~~~~~~~~~~~~ 203 (223)
++++++++..+|.|
T Consensus 12 Vaii~lIlY~iYnr 25 (68)
T PF05961_consen 12 VAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHhc
Confidence 33333344444433
No 103
>PHA03265 envelope glycoprotein D; Provisional
Probab=84.99 E-value=0.51 Score=38.56 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=10.5
Q ss_pred eeehhHHHHH-HHHHHHHHHHHHHHHhc
Q 048080 179 LIKVVIQVIV-LCLILVVFFIVVYGRRR 205 (223)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 205 (223)
.++++++..+ .++++.++++++|+||+
T Consensus 349 ~~g~~ig~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 349 FVGISVGLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred ccceEEccchhhhhhhhHHHHHHhhhhh
Confidence 3344443333 33333344444444433
No 104
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.66 E-value=0.26 Score=42.24 Aligned_cols=111 Identities=23% Similarity=0.151 Sum_probs=65.9
Q ss_pred cCCceEEEccCCccccc--CCcCCCCCCCCCeEeccCc-cccccCC----ccccCCCCCcEEEcccCc-ccccCCccccC
Q 048080 34 ITRSVLLDLFDNLLSGH--FPAEVGNLKHLVSLDISSN-MFSGEIP----TTLGGCTSLEHLSMQDNS-FTGSIPSTLSS 105 (223)
Q Consensus 34 ~~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 105 (223)
.+.++.+.+.++.--.. ........+.|+.|+++++ ......+ .....+.+|+.+++++.. ++...-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566676666532212 1233456788999998873 1111111 233456788889998887 55332223332
Q ss_pred -CCCCCEEECCCCc-cccc-cchhhhCCCCCCEEeccCCcCc
Q 048080 106 -LKSITELDLSRNN-LSGH-IPQYLENLSFLSFLNLSYNHFE 144 (223)
Q Consensus 106 -l~~L~~L~L~~N~-l~~~-~p~~~~~l~~L~~l~l~~N~l~ 144 (223)
+++|+.|.+.++. ++.. +-.....++.|++|+++++...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 6789999877766 5533 2233456788999999876653
No 105
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.91 E-value=0.012 Score=50.89 Aligned_cols=134 Identities=25% Similarity=0.228 Sum_probs=78.2
Q ss_pred CCCeeecccCcccc----CCChhhhhccCCceEEEccCCcccc--------cCCcCCCCCCCCCeEeccCccccccCC--
Q 048080 11 NLILLTTCKNKLSG----TVPRQLLRIITRSVLLDLFDNLLSG--------HFPAEVGNLKHLVSLDISSNMFSGEIP-- 76 (223)
Q Consensus 11 ~L~~L~l~~n~i~~----~~p~~~~~~~~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 76 (223)
.+++|++..+.+++ .+.+.+.. ...++.++++.|.+.. ..+..+....++++|.++++.++...-
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 34556666666553 23333444 4555677777776631 111223346778888888887763211
Q ss_pred --ccccCCCC-CcEEEcccCccccc----CCccccCC-CCCCEEECCCCcccccc----chhhhCCCCCCEEeccCCcCc
Q 048080 77 --TTLGGCTS-LEHLSMQDNSFTGS----IPSTLSSL-KSITELDLSRNNLSGHI----PQYLENLSFLSFLNLSYNHFE 144 (223)
Q Consensus 77 --~~~~~l~~-L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~l~l~~N~l~ 144 (223)
..+...+. +..+++..|.+... ....+..+ ..+++++++.|.++..- ...+..++.++.+.++.|++.
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 12333444 66688888877633 11224444 56788888888887543 344556677888888888876
Q ss_pred c
Q 048080 145 G 145 (223)
Q Consensus 145 ~ 145 (223)
.
T Consensus 304 ~ 304 (478)
T KOG4308|consen 304 D 304 (478)
T ss_pred c
Confidence 4
No 106
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=82.99 E-value=0.96 Score=34.46 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=25.6
Q ss_pred cceeeehhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 048080 176 FSILIKVVIQVIVLCLILVVFFIVVYGRRRRSTQ 209 (223)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (223)
...+.+++.++++++.+++++++++++|++|.+.
T Consensus 34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~ 67 (221)
T PF08374_consen 34 KDYVKIMIAIVAGIMTVILVIFIVVLVRYCRQSP 67 (221)
T ss_pred ccceeeeeeeecchhhhHHHHHHHHHHHHHhhcc
Confidence 4577777777777788888888888887788544
No 107
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.78 E-value=3.2 Score=33.51 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=5.1
Q ss_pred CCCCCeeecccC
Q 048080 9 CQNLILLTTCKN 20 (223)
Q Consensus 9 l~~L~~L~l~~n 20 (223)
|+.+-..+....
T Consensus 15 C~~lC~yd~~~~ 26 (281)
T PF12768_consen 15 CPGLCLYDTDNS 26 (281)
T ss_pred CCEEEEEECCCC
Confidence 444444444333
No 108
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.34 E-value=0.21 Score=37.91 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=51.6
Q ss_pred CceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc-cCCcccc-CCCCCcEEEcccC-cccccCCccccCCCCCCEE
Q 048080 36 RSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG-EIPTTLG-GCTSLEHLSMQDN-SFTGSIPSTLSSLKSITEL 112 (223)
Q Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 112 (223)
.++.+|-++..|..+--..+.+++.++.|.+.++.--+ -.-+.++ -.++|+.|++++| +||..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34778888888776555566777788888777764221 1011111 2468899999977 5664444456667777777
Q ss_pred ECCC
Q 048080 113 DLSR 116 (223)
Q Consensus 113 ~L~~ 116 (223)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7765
No 109
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=81.92 E-value=0.42 Score=30.24 Aligned_cols=10 Identities=0% Similarity=0.009 Sum_probs=2.8
Q ss_pred HHHHHHHHhc
Q 048080 196 FFIVVYGRRR 205 (223)
Q Consensus 196 ~~~~~~~~~~ 205 (223)
++++..++++
T Consensus 20 ~~~~~rr~~~ 29 (75)
T PF14575_consen 20 VIVCFRRCKY 29 (75)
T ss_dssp HHCCCTT---
T ss_pred EEEEEeeEcC
Confidence 3333344443
No 110
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=81.51 E-value=0.78 Score=40.03 Aligned_cols=61 Identities=25% Similarity=0.228 Sum_probs=31.9
Q ss_pred CCCcEEEcccCcccccCCccc----cCCCCCCEEECCCC--ccccccc-hhhhCCCCCCEEeccCCcCccc
Q 048080 83 TSLEHLSMQDNSFTGSIPSTL----SSLKSITELDLSRN--NLSGHIP-QYLENLSFLSFLNLSYNHFEGK 146 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L~L~~N--~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~ 146 (223)
+.+..++|++|++... +.+ ...|+|+.|+|++| .+..... +-++. ..|++|-+.||+++..
T Consensus 218 p~i~sl~lsnNrL~~L--d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHL--DALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhhch--hhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccc
Confidence 4566666777766532 112 22366777777777 3331100 11222 2366777777777653
No 111
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.07 E-value=1.9 Score=30.08 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccccc
Q 048080 187 IVLCLILVVFFIVVYGRRRRSTQKSSN 213 (223)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (223)
+++++.++.+++++++.-||++++...
T Consensus 71 ~gv~aGvIg~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 333334444555566777777777543
No 112
>PHA03049 IMV membrane protein; Provisional
Probab=81.06 E-value=2.9 Score=25.42 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 048080 192 ILVVFFIVVYG 202 (223)
Q Consensus 192 ~~~~~~~~~~~ 202 (223)
++++++..+|.
T Consensus 14 Ii~lIvYgiYn 24 (68)
T PHA03049 14 IIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHh
Confidence 33333333433
No 113
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.05 E-value=1.4 Score=21.93 Aligned_cols=14 Identities=57% Similarity=0.762 Sum_probs=8.9
Q ss_pred CCCCEEECCCCccc
Q 048080 107 KSITELDLSRNNLS 120 (223)
Q Consensus 107 ~~L~~L~L~~N~l~ 120 (223)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666665
No 114
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=78.11 E-value=1.9 Score=32.21 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=11.5
Q ss_pred eeehhHHHHHHHHHHHHHHHHHH
Q 048080 179 LIKVVIQVIVLCLILVVFFIVVY 201 (223)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~ 201 (223)
...+++++++++++++++++++.
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeeeehhhHHHHHHHhHhhhe
Confidence 33444445444444455555555
No 115
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=76.76 E-value=4.5 Score=28.06 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=4.7
Q ss_pred hccCccccccccc
Q 048080 204 RRRSTQKSSNKLS 216 (223)
Q Consensus 204 ~~~~~~~~~~~~~ 216 (223)
.|+++..+.++..
T Consensus 61 NRnrK~~~~~k~~ 73 (125)
T PF15048_consen 61 NRNRKMQPQEKQT 73 (125)
T ss_pred ccccccccccccC
Confidence 3333333333333
No 116
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=76.72 E-value=1.5 Score=33.13 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=10.9
Q ss_pred eeeehhHHHHHHHHHHHHHHHHH
Q 048080 178 ILIKVVIQVIVLCLILVVFFIVV 200 (223)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
..+++++.+++++++++++++++
T Consensus 158 ~~laI~lPvvv~~~~~~~~~~~~ 180 (189)
T PF14610_consen 158 YALAIALPVVVVVLALIMYGFFF 180 (189)
T ss_pred eeEEEEccHHHHHHHHHHHhhhe
Confidence 34555555555544444444433
No 117
>PF15102 TMEM154: TMEM154 protein family
Probab=76.57 E-value=1.7 Score=31.10 Aligned_cols=16 Identities=19% Similarity=0.411 Sum_probs=7.0
Q ss_pred eehhHHHHHHHHHHHH
Q 048080 180 IKVVIQVIVLCLILVV 195 (223)
Q Consensus 180 ~~~~~~~~~~~~~~~~ 195 (223)
-.++++++..++++++
T Consensus 56 efiLmIlIP~VLLvlL 71 (146)
T PF15102_consen 56 EFILMILIPLVLLVLL 71 (146)
T ss_pred ceEEEEeHHHHHHHHH
Confidence 3344444444444443
No 118
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=75.86 E-value=3.8 Score=26.23 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=11.8
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHh
Q 048080 178 ILIKVVIQVIVLCLILVVFFIVVYGRR 204 (223)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (223)
|..+++.+.++++++.+.+.+++++.|
T Consensus 16 ~yyiiA~gga~llL~~v~l~vvL~C~r 42 (87)
T PF11980_consen 16 WYYIIAMGGALLLLVAVCLGVVLYCHR 42 (87)
T ss_pred eeHHHhhccHHHHHHHHHHHHHHhhhh
Confidence 444444444444444444344444433
No 119
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.75 E-value=1.9 Score=37.77 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=17.0
Q ss_pred CCCCeeecccCccccCCCh--hhhhccCCceEEEccCC
Q 048080 10 QNLILLTTCKNKLSGTVPR--QLLRIITRSVLLDLFDN 45 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p~--~~~~~~~~l~~L~L~~n 45 (223)
+.+..+++++|++. .+.. ++....+.|.+|+|++|
T Consensus 218 p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 44455556666654 3332 23333444555566555
No 120
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=73.94 E-value=4.4 Score=37.13 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhccCc
Q 048080 189 LCLILVVFFIVVYGRRRRST 208 (223)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~ 208 (223)
+++++++++++||||||..+
T Consensus 284 livl~lL~vLl~yCrrkc~~ 303 (807)
T PF10577_consen 284 LIVLILLCVLLCYCRRKCLK 303 (807)
T ss_pred HHHHHHHHHHHHhhhcccCC
Confidence 33334444445555554433
No 121
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=72.88 E-value=2.5 Score=30.04 Aligned_cols=22 Identities=9% Similarity=0.478 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 048080 182 VVIQVIVLCLILVVFFIVVYGR 203 (223)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ 203 (223)
..+.++.+++.++++++..+++
T Consensus 31 m~tILiaIvVliiiiivli~lc 52 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLC 52 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444444443
No 122
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=70.98 E-value=3.3 Score=35.19 Aligned_cols=13 Identities=15% Similarity=-0.085 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 048080 191 LILVVFFIVVYGR 203 (223)
Q Consensus 191 ~~~~~~~~~~~~~ 203 (223)
|..+|.|++||+.
T Consensus 380 VgglvGfLcWwf~ 392 (397)
T PF03302_consen 380 VGGLVGFLCWWFI 392 (397)
T ss_pred HHHHHHHHhhhee
Confidence 3334444444443
No 123
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=69.40 E-value=4.5 Score=32.92 Aligned_cols=26 Identities=15% Similarity=0.464 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccC
Q 048080 182 VVIQVIVLCLILVVFFIVVYGRRRRS 207 (223)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (223)
+++.+++++.+++..++.++|+|+.+
T Consensus 263 iaIliIVLIMvIIYLILRYRRKKKmk 288 (299)
T PF02009_consen 263 IAILIIVLIMVIIYLILRYRRKKKMK 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444555555555555555544443
No 124
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=69.34 E-value=4.2 Score=27.32 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=18.9
Q ss_pred CcceeeehhHHHHHHHHHHHHHHHHHHHHhccCc
Q 048080 175 KFSILIKVVIQVIVLCLILVVFFIVVYGRRRRST 208 (223)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (223)
....+++++++++++++++.++..++..|.|++.
T Consensus 60 ~~~iili~lls~v~IlVily~IyYFVILRer~~~ 93 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYFVILRERQKS 93 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEEEEEeccccc
Confidence 3445666677777766666555544444444333
No 125
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=68.35 E-value=1.6 Score=34.55 Aligned_cols=24 Identities=33% Similarity=0.575 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhccCcccc
Q 048080 188 VLCLILVVFFIVVYGRRRRSTQKS 211 (223)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~ 211 (223)
+++|+++|..+.||++|||.+++.
T Consensus 235 iILVLLaVGGLLfYr~rrRs~~e~ 258 (285)
T PF05337_consen 235 IILVLLAVGGLLFYRRRRRSHREP 258 (285)
T ss_dssp ------------------------
T ss_pred hhhhhhhccceeeecccccccccc
Confidence 344455555566666666655543
No 126
>PF15069 FAM163: FAM163 family
Probab=65.73 E-value=19 Score=25.67 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 048080 188 VLCLILVVFFIV 199 (223)
Q Consensus 188 ~~~~~~~~~~~~ 199 (223)
+++.+++|++.+
T Consensus 17 ILLcIIaVLCYC 28 (143)
T PF15069_consen 17 ILLCIIAVLCYC 28 (143)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 127
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=64.36 E-value=14 Score=23.37 Aligned_cols=6 Identities=33% Similarity=0.816 Sum_probs=2.2
Q ss_pred HHHHHH
Q 048080 184 IQVIVL 189 (223)
Q Consensus 184 ~~~~~~ 189 (223)
++++++
T Consensus 8 ~Pliif 13 (75)
T TIGR02976 8 IPLIIF 13 (75)
T ss_pred HHHHHH
Confidence 333333
No 128
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=64.04 E-value=13 Score=23.33 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=15.7
Q ss_pred cceeeehhHHHHHHHHHHHHHHHHHHHHhc
Q 048080 176 FSILIKVVIQVIVLCLILVVFFIVVYGRRR 205 (223)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (223)
....+++++..+.++.+++++..++.++|+
T Consensus 28 ~~~avaVviPl~L~LCiLvl~yai~~fkrk 57 (74)
T PF11857_consen 28 TVNAVAVVIPLVLLLCILVLIYAIFQFKRK 57 (74)
T ss_pred ceeEEEEeHHHHHHHHHHHHHHHhheeeec
Confidence 334555666665555555555555544433
No 129
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=63.33 E-value=9.2 Score=26.14 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=9.0
Q ss_pred eeeehhHHHHHHHHHHHHH
Q 048080 178 ILIKVVIQVIVLCLILVVF 196 (223)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~ 196 (223)
....++|+.++.+++.++.
T Consensus 84 ~aLp~VIGGLcaL~LaamG 102 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMG 102 (126)
T ss_pred cchhhhhhHHHHHHHHHHH
Confidence 4445555555444444443
No 130
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=62.40 E-value=14 Score=26.55 Aligned_cols=16 Identities=38% Similarity=0.814 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 048080 182 VVIQVIVLCLILVVFF 197 (223)
Q Consensus 182 ~~~~~~~~~~~~~~~~ 197 (223)
+++.+.+++.++++++
T Consensus 123 laisvtvv~~iliii~ 138 (154)
T PF14914_consen 123 LAISVTVVVMILIIIF 138 (154)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344433333333333
No 131
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=60.49 E-value=6.8 Score=40.99 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.6
Q ss_pred ecccCccccCCChhhhhccCCceEEEccCCccc
Q 048080 16 TTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLS 48 (223)
Q Consensus 16 ~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~ 48 (223)
||++|+|. .+|++.|..+..|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 57888888 888888888888888888888765
No 132
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=59.66 E-value=6.5 Score=33.46 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=64.2
Q ss_pred CCCCCeeecccCcc-ccCCChhhhhccCCceEEEccCCcc-cccCCcCC-CCCCCCCeEeccCcccccc--CCccccCCC
Q 048080 9 CQNLILLTTCKNKL-SGTVPRQLLRIITRSVLLDLFDNLL-SGHFPAEV-GNLKHLVSLDISSNMFSGE--IPTTLGGCT 83 (223)
Q Consensus 9 l~~L~~L~l~~n~i-~~~~p~~~~~~~~~l~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~~~l~ 83 (223)
+..|++|+.++..- .+.+-..+.....+|+.+-++.++- +..-...+ .+...|+.+++........ ....-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 44566666655432 2122223445556667777666652 11000000 2345666666666543311 112224566
Q ss_pred CCcEEEcccCcccccC-----CccccCCCCCCEEECCCCccccc-cchhhhCCCCCCEEeccCCc
Q 048080 84 SLEHLSMQDNSFTGSI-----PSTLSSLKSITELDLSRNNLSGH-IPQYLENLSFLSFLNLSYNH 142 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~l~l~~N~ 142 (223)
.|+.+.++++.+.... ...-..+..|..+.|++...... .-..+..++.|+.+++-+.+
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7777777766443111 11123445667777776665422 22334455666666655543
No 133
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=58.61 E-value=12 Score=33.60 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=12.9
Q ss_pred CcceeeehhHHHHHHHHHHHHHHH
Q 048080 175 KFSILIKVVIQVIVLCLILVVFFI 198 (223)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~ 198 (223)
....-.++++++++-+++++++++
T Consensus 264 s~~~NlWII~gVlvPv~vV~~Iii 287 (684)
T PF12877_consen 264 SPPNNLWIIAGVLVPVLVVLLIII 287 (684)
T ss_pred CCCCCeEEEehHhHHHHHHHHHHH
Confidence 334567777777554444444333
No 134
>PHA03286 envelope glycoprotein E; Provisional
Probab=58.13 E-value=11 Score=32.30 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=2.3
Q ss_pred HHHHHH
Q 048080 198 IVVYGR 203 (223)
Q Consensus 198 ~~~~~~ 203 (223)
+.+++|
T Consensus 412 ~~~~~r 417 (492)
T PHA03286 412 AGLYRR 417 (492)
T ss_pred HhHhhh
Confidence 333443
No 135
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=57.73 E-value=28 Score=36.64 Aligned_cols=26 Identities=19% Similarity=-0.030 Sum_probs=16.9
Q ss_pred chhhhCCCCCCEEeccCCcCcccCCc
Q 048080 124 PQYLENLSFLSFLNLSYNHFEGKVPI 149 (223)
Q Consensus 124 p~~~~~l~~L~~l~l~~N~l~~~~~~ 149 (223)
|-+...|..=-+....+|.+.|.||.
T Consensus 3905 pC~snPC~~GgtCip~~n~f~CnC~~ 3930 (4289)
T KOG1219|consen 3905 PCASNPCLTGGTCIPFYNGFLCNCPN 3930 (4289)
T ss_pred cccCCCCCCCCEEEecCCCeeEeCCC
Confidence 33444455556777778888888874
No 136
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=57.63 E-value=3.4 Score=33.38 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHhccCccccccc
Q 048080 180 IKVVIQVIVLCLILVVFFIVVYGRRRRSTQKSSNK 214 (223)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (223)
...++..++++++++++++++.+.-||+++.+...
T Consensus 146 L~T~IpaVVI~~iLLIA~iIa~icyrrkR~GK~~~ 180 (290)
T PF05454_consen 146 LHTFIPAVVIAAILLIAGIIACICYRRKRKGKMSL 180 (290)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 34456667777777777788888888777766643
No 137
>KOG4007 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.14 E-value=10 Score=28.48 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=5.6
Q ss_pred CCCCCCCCCcc
Q 048080 167 LCGGSRKSKFS 177 (223)
Q Consensus 167 ~C~~~~~~~~~ 177 (223)
.|+|.......
T Consensus 120 ~CeCrye~RnT 130 (229)
T KOG4007|consen 120 ECECRYEERNT 130 (229)
T ss_pred hCcccccccCc
Confidence 36675544433
No 138
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=56.70 E-value=9.4 Score=27.47 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=5.1
Q ss_pred CCCCCCCCC
Q 048080 167 LCGGSRKSK 175 (223)
Q Consensus 167 ~C~~~~~~~ 175 (223)
.|+|.....
T Consensus 41 rCeCkyE~R 49 (149)
T PF05434_consen 41 RCECKYESR 49 (149)
T ss_pred cccceeeee
Confidence 477755433
No 139
>PF15345 TMEM51: Transmembrane protein 51
Probab=56.63 E-value=25 Score=27.34 Aligned_cols=7 Identities=14% Similarity=0.164 Sum_probs=2.6
Q ss_pred eehhHHH
Q 048080 180 IKVVIQV 186 (223)
Q Consensus 180 ~~~~~~~ 186 (223)
..+++++
T Consensus 61 AyVLVG~ 67 (233)
T PF15345_consen 61 AYVLVGS 67 (233)
T ss_pred EEehhhH
Confidence 3333333
No 140
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=54.84 E-value=22 Score=24.16 Aligned_cols=30 Identities=7% Similarity=0.187 Sum_probs=14.6
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhccCccc
Q 048080 181 KVVIQVIVLCLILVVFFIVVYGRRRRSTQK 210 (223)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (223)
..+++++.++.+++-++++...+|+++..+
T Consensus 4 l~il~llLll~l~asl~~wr~~~rq~k~~~ 33 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQRQKKAGQ 33 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 344555555555555555444444444333
No 141
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=52.15 E-value=18 Score=22.27 Aligned_cols=13 Identities=8% Similarity=0.319 Sum_probs=5.3
Q ss_pred HHHHHHHHhccCc
Q 048080 196 FFIVVYGRRRRST 208 (223)
Q Consensus 196 ~~~~~~~~~~~~~ 208 (223)
.+.-+|+++|+.+
T Consensus 49 ~ltN~YFK~k~dr 61 (68)
T PF04971_consen 49 YLTNLYFKIKEDR 61 (68)
T ss_pred HHhHhhhhhhHhh
Confidence 3333444444333
No 142
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=52.02 E-value=11 Score=31.28 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhccCcccc
Q 048080 192 ILVVFFIVVYGRRRRSTQKS 211 (223)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~ 211 (223)
+++++++..|.--|-||+++
T Consensus 321 vIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 321 IIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHhhhcch
Confidence 33344444444444444433
No 143
>PTZ00046 rifin; Provisional
Probab=51.65 E-value=11 Score=31.37 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhccCcccc
Q 048080 191 LILVVFFIVVYGRRRRSTQKS 211 (223)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~ 211 (223)
++++++++..|.--|-||+++
T Consensus 325 vVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 325 VVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHhhhcch
Confidence 344444455555555555444
No 144
>PRK09458 pspB phage shock protein B; Provisional
Probab=50.92 E-value=29 Score=21.85 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhccCccccccccc
Q 048080 189 LCLILVVFFIVVYGRRRRSTQKSSNKLS 216 (223)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (223)
++++++++.-.|.+.+.+.+++....-+
T Consensus 10 liiF~ifVaPiWL~LHY~sk~~~~~~Ls 37 (75)
T PRK09458 10 LTIFVLFVAPIWLWLHYRSKRQGSQGLS 37 (75)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCC
Confidence 3344455556666666555555444333
No 145
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=50.77 E-value=19 Score=28.91 Aligned_cols=27 Identities=30% Similarity=0.424 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhccCccccccc
Q 048080 188 VLCLILVVFFIVVYGRRRRSTQKSSNK 214 (223)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (223)
.++++++|++++.|.+-+||+++....
T Consensus 266 lvllil~vvliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 344556667778888999988877643
No 146
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.61 E-value=55 Score=19.84 Aligned_cols=27 Identities=15% Similarity=0.543 Sum_probs=11.2
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHh
Q 048080 178 ILIKVVIQVIVLCLILVVFFIVVYGRR 204 (223)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (223)
.++.++++.+++++++.-.+++.|+++
T Consensus 14 lIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 14 LIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred eEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444443
No 147
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=50.56 E-value=5.1 Score=28.75 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=7.2
Q ss_pred ehhHHHHHHHHHHHHHH
Q 048080 181 KVVIQVIVLCLILVVFF 197 (223)
Q Consensus 181 ~~~~~~~~~~~~~~~~~ 197 (223)
.+++++..+++++++++
T Consensus 11 ~i~igi~Ll~lLl~cgi 27 (158)
T PF11770_consen 11 AISIGISLLLLLLLCGI 27 (158)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34444444444433333
No 148
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=49.62 E-value=29 Score=22.55 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=15.3
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhccCc
Q 048080 181 KVVIQVIVLCLILVVFFIVVYGRRRRST 208 (223)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (223)
..++..+.++++++-+.++..++|.|+.
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 4445455555555555556666665554
No 149
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=49.34 E-value=27 Score=33.68 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 048080 186 VIVLCLILVVFF 197 (223)
Q Consensus 186 ~~~~~~~~~~~~ 197 (223)
+++.++++++++
T Consensus 985 vl~GLLlL~llv 996 (1030)
T KOG3637|consen 985 VLGGLLLLALLV 996 (1030)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 150
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=48.65 E-value=33 Score=24.54 Aligned_cols=10 Identities=10% Similarity=0.428 Sum_probs=4.1
Q ss_pred eeeehhHHHH
Q 048080 178 ILIKVVIQVI 187 (223)
Q Consensus 178 ~~~~~~~~~~ 187 (223)
.+.+++.+++
T Consensus 62 AIaGIVfgiV 71 (155)
T PF10873_consen 62 AIAGIVFGIV 71 (155)
T ss_pred eeeeeehhhH
Confidence 3444444433
No 151
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=47.87 E-value=26 Score=22.12 Aligned_cols=24 Identities=38% Similarity=0.195 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhccCccccccccc
Q 048080 192 ILVVFFIVVYGRRRRSTQKSSNKLS 216 (223)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (223)
+++|+... .+...+.+++....-+
T Consensus 14 ~ifVap~W-L~lHY~sk~~~~~gLs 37 (75)
T PF06667_consen 14 MIFVAPIW-LILHYRSKWKSSQGLS 37 (75)
T ss_pred HHHHHHHH-HHHHHHHhcccCCCCC
Confidence 33333333 3444444444433333
No 152
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=47.19 E-value=44 Score=19.54 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 048080 192 ILVVFFIVVYG 202 (223)
Q Consensus 192 ~~~~~~~~~~~ 202 (223)
++++++..+++
T Consensus 39 ~l~~~~~~~~~ 49 (55)
T PF03988_consen 39 LLAVVLALWYR 49 (55)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 153
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=47.02 E-value=32 Score=22.04 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 048080 188 VLCLILVVFFIVV 200 (223)
Q Consensus 188 ~~~~~~~~~~~~~ 200 (223)
++++++++++++|
T Consensus 11 aliv~~iiaIvvW 23 (81)
T PF00558_consen 11 ALIVALIIAIVVW 23 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444544
No 154
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=46.33 E-value=39 Score=21.99 Aligned_cols=16 Identities=44% Similarity=0.712 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 048080 190 CLILVVFFIVVYGRRR 205 (223)
Q Consensus 190 ~~~~~~~~~~~~~~~~ 205 (223)
++++.++..+..||+|
T Consensus 84 c~~~~v~~l~lrwr~r 99 (100)
T PF10954_consen 84 CLILGVIALILRWRHR 99 (100)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3333443344444443
No 155
>PHA03049 IMV membrane protein; Provisional
Probab=45.82 E-value=66 Score=19.66 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhccCcccc
Q 048080 188 VLCLILVVFFIVVYGRRRRSTQKS 211 (223)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~ 211 (223)
.+++.++++.+.+|---+|++...
T Consensus 7 l~iICVaIi~lIvYgiYnkk~~~q 30 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKTTTS 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccccC
Confidence 344455555566666666655443
No 156
>PTZ00370 STEVOR; Provisional
Probab=45.73 E-value=16 Score=29.34 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhccCcccccccc
Q 048080 188 VLCLILVVFFIVVYGRRRRSTQKSSNKL 215 (223)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (223)
.++++++|++++.|.+-+||+++....+
T Consensus 262 lvllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 262 LVLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3445566677788889888888776443
No 157
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=44.09 E-value=28 Score=25.77 Aligned_cols=9 Identities=11% Similarity=0.541 Sum_probs=4.0
Q ss_pred HHHHHHHhc
Q 048080 197 FIVVYGRRR 205 (223)
Q Consensus 197 ~~~~~~~~~ 205 (223)
-++.|.+||
T Consensus 134 SyiaYqkKK 142 (169)
T PF12301_consen 134 SYIAYQKKK 142 (169)
T ss_pred HHHHHHhhc
Confidence 344444444
No 158
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=43.85 E-value=35 Score=21.06 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=2.5
Q ss_pred HHHHHHh
Q 048080 198 IVVYGRR 204 (223)
Q Consensus 198 ~~~~~~~ 204 (223)
.++..+|
T Consensus 16 lC~lsrR 22 (74)
T PF05083_consen 16 LCRLSRR 22 (74)
T ss_pred HHHHHhh
Confidence 3333333
No 159
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=43.77 E-value=37 Score=24.58 Aligned_cols=10 Identities=40% Similarity=0.929 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 048080 195 VFFIVVYGRR 204 (223)
Q Consensus 195 ~~~~~~~~~~ 204 (223)
+++.+.|.|.
T Consensus 31 ~~~~~~Y~r~ 40 (149)
T PF11694_consen 31 IFFFIKYLRN 40 (149)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 160
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=43.50 E-value=17 Score=17.35 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=8.8
Q ss_pred CCCCCeeecccCc
Q 048080 9 CQNLILLTTCKNK 21 (223)
Q Consensus 9 l~~L~~L~l~~n~ 21 (223)
+++|++|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777764
No 161
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=42.96 E-value=48 Score=25.11 Aligned_cols=12 Identities=17% Similarity=0.573 Sum_probs=4.7
Q ss_pred eeeehhHHHHHH
Q 048080 178 ILIKVVIQVIVL 189 (223)
Q Consensus 178 ~~~~~~~~~~~~ 189 (223)
.++.|.+.++++
T Consensus 100 ~~iTITvSlImV 111 (205)
T PF15298_consen 100 QIITITVSLIMV 111 (205)
T ss_pred EEEEEeeehhHH
Confidence 344444433333
No 162
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=42.27 E-value=93 Score=20.04 Aligned_cols=7 Identities=43% Similarity=0.994 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 048080 196 FFIVVYG 202 (223)
Q Consensus 196 ~~~~~~~ 202 (223)
+++..+.
T Consensus 54 F~iL~~m 60 (90)
T PF15183_consen 54 FLILLYM 60 (90)
T ss_pred HHHHHHH
Confidence 3333333
No 163
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=41.58 E-value=8.7 Score=26.74 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCc
Q 048080 195 VFFIVVYGRRRRST 208 (223)
Q Consensus 195 ~~~~~~~~~~~~~~ 208 (223)
+++....+||+|-.
T Consensus 98 ~lv~rrcrrr~~~t 111 (129)
T PF12191_consen 98 FLVWRRCRRREKFT 111 (129)
T ss_dssp --------------
T ss_pred HHHHhhhhccccCC
Confidence 34444555555443
No 164
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=41.22 E-value=66 Score=24.14 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=4.6
Q ss_pred eeeehhHHHHHH
Q 048080 178 ILIKVVIQVIVL 189 (223)
Q Consensus 178 ~~~~~~~~~~~~ 189 (223)
.+++++++++++
T Consensus 18 ~l~~iIi~~~ll 29 (182)
T PRK08455 18 ALLIIIIGVVVL 29 (182)
T ss_pred eeEEehHHHHHH
Confidence 333344433333
No 165
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=39.54 E-value=9.8 Score=33.45 Aligned_cols=12 Identities=17% Similarity=-0.094 Sum_probs=0.0
Q ss_pred eeeehhHHHHHH
Q 048080 178 ILIKVVIQVIVL 189 (223)
Q Consensus 178 ~~~~~~~~~~~~ 189 (223)
|...+.++++++
T Consensus 451 W~~~~~~~~~~v 462 (501)
T PF00974_consen 451 WGEWLSIIAIAV 462 (501)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 166
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=39.27 E-value=42 Score=25.30 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=10.5
Q ss_pred eehhHHHHHHHHHHHHHHHHHHH
Q 048080 180 IKVVIQVIVLCLILVVFFIVVYG 202 (223)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~ 202 (223)
..-.|+.|++++.+..++++.|+
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff~~K 182 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFFLYK 182 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhh
Confidence 33445555554444444444443
No 167
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=39.18 E-value=37 Score=30.32 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhcc
Q 048080 194 VVFFIVVYGRRRR 206 (223)
Q Consensus 194 ~~~~~~~~~~~~~ 206 (223)
++.+++|++||||
T Consensus 538 ~~G~~~~~~Rrr~ 550 (552)
T TIGR03521 538 LFGLSFTYIRKRK 550 (552)
T ss_pred HHHHHHHHHHHhh
Confidence 3344444444433
No 168
>KOG4818 consensus Lysosomal-associated membrane protein [General function prediction only]
Probab=38.17 E-value=33 Score=28.56 Aligned_cols=26 Identities=27% Similarity=0.559 Sum_probs=14.4
Q ss_pred ceeeehhHHHHHHHHHHHHHHHHHHH
Q 048080 177 SILIKVVIQVIVLCLILVVFFIVVYG 202 (223)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (223)
..++.++++.++..++++++++++..
T Consensus 326 siv~PivVg~~l~gl~~~vliaylIg 351 (362)
T KOG4818|consen 326 NIVLPIAVGAILAGLVLVVLIAYLIG 351 (362)
T ss_pred ceecchHHHHHHHHHHHHHHHHhhee
Confidence 34555566666655555555555543
No 169
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=37.75 E-value=42 Score=27.35 Aligned_cols=30 Identities=7% Similarity=0.102 Sum_probs=15.2
Q ss_pred ehhHHHHHHHHHHHH-HHHHHHHHhccCccc
Q 048080 181 KVVIQVIVLCLILVV-FFIVVYGRRRRSTQK 210 (223)
Q Consensus 181 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 210 (223)
-.++.++++++++++ +++++.+.-.|||.+
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 455666555555544 444445544444443
No 170
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=37.71 E-value=44 Score=24.62 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHHHH
Q 048080 182 VVIQVIVLCLILVVF 196 (223)
Q Consensus 182 ~~~~~~~~~~~~~~~ 196 (223)
+++++.+++++.+++
T Consensus 100 Vl~g~s~l~i~yfvi 114 (163)
T PF06679_consen 100 VLVGLSALAILYFVI 114 (163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334444443
No 171
>PTZ00234 variable surface protein Vir12; Provisional
Probab=37.41 E-value=21 Score=30.79 Aligned_cols=7 Identities=14% Similarity=0.244 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 048080 194 VVFFIVV 200 (223)
Q Consensus 194 ~~~~~~~ 200 (223)
.++++++
T Consensus 375 GtifFlf 381 (433)
T PTZ00234 375 GVLVFLF 381 (433)
T ss_pred HHHHHhh
Confidence 3333333
No 172
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=36.22 E-value=12 Score=32.33 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 048080 187 IVLCLILVV 195 (223)
Q Consensus 187 ~~~~~~~~~ 195 (223)
+++++++++
T Consensus 359 lgvavlivV 367 (439)
T PF02480_consen 359 LGVAVLIVV 367 (439)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 334444333
No 173
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=35.39 E-value=15 Score=25.55 Aligned_cols=16 Identities=0% Similarity=0.324 Sum_probs=7.6
Q ss_pred HHHHHHHHHhccCccc
Q 048080 195 VFFIVVYGRRRRSTQK 210 (223)
Q Consensus 195 ~~~~~~~~~~~~~~~~ 210 (223)
++.....++|++++++
T Consensus 100 lcW~~~~rkK~~kr~e 115 (129)
T PF15099_consen 100 LCWKPIIRKKKKKRRE 115 (129)
T ss_pred heehhhhHhHHHHhhh
Confidence 4455555544444433
No 174
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=33.89 E-value=85 Score=18.48 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 048080 183 VIQVIVLCLILVVFFIVVY 201 (223)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ 201 (223)
++.++++.+++.-+.++.|
T Consensus 7 lIIviVlgvIigNia~LK~ 25 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAALKY 25 (55)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3333444444444444444
No 175
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=33.80 E-value=65 Score=25.34 Aligned_cols=9 Identities=11% Similarity=0.054 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 048080 164 NENLCGGSR 172 (223)
Q Consensus 164 n~~~C~~~~ 172 (223)
+.+.|.-+.
T Consensus 174 ~~~~C~~~~ 182 (237)
T PF09777_consen 174 KTFNCSVPC 182 (237)
T ss_pred ccccCCCcc
Confidence 345564333
No 176
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=33.05 E-value=26 Score=30.02 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=77.8
Q ss_pred CCCCCCCeeecccCccccCCC-hhhhhccCCceEEEccCCccc--ccCCcCCCCCCCCCeEeccCccccccC-----Ccc
Q 048080 7 GNCQNLILLTTCKNKLSGTVP-RQLLRIITRSVLLDLFDNLLS--GHFPAEVGNLKHLVSLDISSNMFSGEI-----PTT 78 (223)
Q Consensus 7 ~~l~~L~~L~l~~n~i~~~~p-~~~~~~~~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~ 78 (223)
.+.++|+.+.++.++--+..- ..+.+.-+.|+.+++..+... +.+...-.+.+.|+.+.++++...... ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 356789999888776321211 223445566688888877543 112222246788999999988754222 222
Q ss_pred ccCCCCCcEEEcccCccc-ccCCccccCCCCCCEEECCCCccccc--cchhhhCCCCCCEE
Q 048080 79 LGGCTSLEHLSMQDNSFT-GSIPSTLSSLKSITELDLSRNNLSGH--IPQYLENLSFLSFL 136 (223)
Q Consensus 79 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~l 136 (223)
-.++..|..+-|++.... ...-..+...++|+.+++-+.+--.. +...-.++|+++..
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 345678999999998754 22223456678899988877654322 22233456666544
No 177
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=32.82 E-value=44 Score=23.94 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048080 186 VIVLCLILVVFFIVVYG 202 (223)
Q Consensus 186 ~~~~~~~~~~~~~~~~~ 202 (223)
++++++++++++..+.+
T Consensus 28 ~lll~~~~~~~~~~~r~ 44 (146)
T PF14316_consen 28 ALLLLLLILLLWRLWRR 44 (146)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444454444433
No 178
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=31.14 E-value=1e+02 Score=24.03 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=8.6
Q ss_pred eehhHHHHHHHHHHHHHH
Q 048080 180 IKVVIQVIVLCLILVVFF 197 (223)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~ 197 (223)
.+++.++++++|+.+.+|
T Consensus 188 ~vilpvvIaliVitl~vf 205 (259)
T PF07010_consen 188 SVILPVVIALIVITLSVF 205 (259)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 344555555555444433
No 179
>PF15471 TMEM171: Transmembrane protein family 171
Probab=30.86 E-value=37 Score=27.07 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcccccccccccc
Q 048080 186 VIVLCLILVVFFIVVYGRRRRSTQKSSNKLSMEQ 219 (223)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (223)
.-.++++.+.++++...|||..-...++.++.|+
T Consensus 166 GPlIVl~GLCFFVVAHvKKr~nln~~qd~se~Ee 199 (319)
T PF15471_consen 166 GPLIVLVGLCFFVVAHVKKRNNLNGSQDASESEE 199 (319)
T ss_pred hhHHHHHhhhhhheeeeeeccCCCcccCcccccc
Confidence 3334444445555555566665555555555555
No 180
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=29.82 E-value=21 Score=26.83 Aligned_cols=30 Identities=3% Similarity=0.107 Sum_probs=18.4
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 048080 180 IKVVIQVIVLCLILVVFFIVVYGRRRRSTQ 209 (223)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (223)
...+++++-+++++++++++.++.+.|+++
T Consensus 157 ~~~laI~lPvvv~~~~~~~~~~~~~~R~~R 186 (189)
T PF14610_consen 157 KYALAIALPVVVVVLALIMYGFFFWNRKKR 186 (189)
T ss_pred ceeEEEEccHHHHHHHHHHHhhheeeccce
Confidence 345555666677776666666666655444
No 181
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=28.80 E-value=74 Score=23.59 Aligned_cols=31 Identities=6% Similarity=0.084 Sum_probs=20.1
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHhccCc
Q 048080 178 ILIKVVIQVIVLCLILVVFFIVVYGRRRRST 208 (223)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (223)
....++.+|+.+++++++..+--|+-..|++
T Consensus 112 ~~~g~IaGIvsav~valvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 112 AEAGTIAGIVSAVVVALVGAVSSYIAYQKKK 142 (169)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445566666666666777777777666666
No 182
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=28.51 E-value=27 Score=19.47 Aligned_cols=10 Identities=20% Similarity=0.445 Sum_probs=7.7
Q ss_pred CCCCCCCCCC
Q 048080 164 NENLCGGSRK 173 (223)
Q Consensus 164 n~~~C~~~~~ 173 (223)
|||.|+|...
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 7899998654
No 183
>PRK09459 pspG phage shock protein G; Reviewed
Probab=28.45 E-value=74 Score=20.02 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=4.5
Q ss_pred HHHHHHhccCc
Q 048080 198 IVVYGRRRRST 208 (223)
Q Consensus 198 ~~~~~~~~~~~ 208 (223)
.+|.+|+.+++
T Consensus 57 ~vW~~r~~~~~ 67 (76)
T PRK09459 57 VVWVIRAIKAP 67 (76)
T ss_pred HHHHHHHhhcc
Confidence 33444443433
No 184
>PF00599 Flu_M2: Influenza Matrix protein (M2); InterPro: IPR002089 This entry contains Influenza virus matrix protein 2. It is an integral membrane protein that is expressed on the infected cell surface and incorporated into virions where it is a minor component. The protein spans the viral membrane with an extracellular amino-terminus and a cytoplasmic carboxy-terminus. The transmembrane domain of the M2 protein forms the channel pore. The M2 protein, which forms a homotetramer, has H+ ion channel which was found to be regulated by pH [ and may have a pivotal role in the biology of Influenza virus infection [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015992 proton transport, 0033644 host cell membrane, 0055036 virion membrane; PDB: 2L0J_A 2KWX_B 2KIH_A 2RLF_A 1MP6_A 2LJB_D 2LJC_A 2H95_B 1NYJ_B 3BKD_E ....
Probab=28.07 E-value=7.3 Score=24.93 Aligned_cols=15 Identities=33% Similarity=0.244 Sum_probs=1.0
Q ss_pred ecCCCCCCCCCCCCC
Q 048080 161 LVGNENLCGGSRKSK 175 (223)
Q Consensus 161 ~~~n~~~C~~~~~~~ 175 (223)
...|.|-|.|+.++.
T Consensus 10 ptrneWeCrc~~ssd 24 (97)
T PF00599_consen 10 PTRNEWECRCSDSSD 24 (97)
T ss_dssp -------------HH
T ss_pred ccccCceeeecCCcc
Confidence 346888999877654
No 185
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=27.78 E-value=81 Score=24.13 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 048080 182 VVIQVIVLCLILVVFFIVVYGRRR 205 (223)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~ 205 (223)
+.++.+++++++++++++.++|++
T Consensus 185 lgiG~v~I~~l~~~~~~l~~~r~~ 208 (209)
T PF11353_consen 185 LGIGTVLIVLLILLGFLLRRRRLP 208 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345566666666667777777764
No 186
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=27.31 E-value=21 Score=28.28 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=3.2
Q ss_pred cccCcccc
Q 048080 17 TCKNKLSG 24 (223)
Q Consensus 17 l~~n~i~~ 24 (223)
.++|.+++
T Consensus 28 ~~gnpvTD 35 (273)
T PF02404_consen 28 ICGNPVTD 35 (273)
T ss_dssp -SGGGS-C
T ss_pred ccCCcCch
Confidence 34555554
No 187
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=26.94 E-value=91 Score=26.24 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=15.8
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHhccCcc
Q 048080 178 ILIKVVIQVIVLCLILVVFFIVVYGRRRRSTQ 209 (223)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (223)
.+++.+.++..++++.+++|+|--|.|.|+.+
T Consensus 16 vlwgsLaav~~f~lis~LifLCsSC~reKK~~ 47 (428)
T PF15347_consen 16 VLWGSLAAVTTFLLISFLIFLCSSCDREKKPK 47 (428)
T ss_pred EeehHHHHHHHHHHHHHHHHHhhcccccccCC
Confidence 34444445555555555555555554444443
No 188
>PRK01821 hypothetical protein; Provisional
Probab=26.93 E-value=1e+02 Score=21.82 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=2.6
Q ss_pred HHHhccC
Q 048080 201 YGRRRRS 207 (223)
Q Consensus 201 ~~~~~~~ 207 (223)
+..||++
T Consensus 117 ~l~~~~~ 123 (133)
T PRK01821 117 YVHGERK 123 (133)
T ss_pred HHHhhhh
Confidence 3333333
No 189
>PHA03281 envelope glycoprotein E; Provisional
Probab=26.82 E-value=63 Score=28.61 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred eeeehhHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 048080 178 ILIKVVIQVIVLCLILVVFFIVVYGRRRRSTQKS 211 (223)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (223)
+....++++++++++++++....+++|++++.+.
T Consensus 559 l~~~~a~~~ll~l~~~~~c~~~~~~~~~~~~~~~ 592 (642)
T PHA03281 559 ITGGFAALALLCLAIALICTAKKFGHKAYRSDKA 592 (642)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhheeecccc
No 190
>PF15050 SCIMP: SCIMP protein
Probab=26.68 E-value=68 Score=22.23 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048080 185 QVIVLCLILVVFFIVVY 201 (223)
Q Consensus 185 ~~~~~~~~~~~~~~~~~ 201 (223)
.+++++++.+++.+++|
T Consensus 12 LAVaII~vS~~lglIly 28 (133)
T PF15050_consen 12 LAVAIILVSVVLGLILY 28 (133)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444455
No 191
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=26.30 E-value=1.5e+02 Score=24.77 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=17.3
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 048080 179 LIKVVIQVIVLCLILVVFFIVVYGRRRRSTQKS 211 (223)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (223)
+-++.++|..+++++.+++.+.+.++.++....
T Consensus 311 LgI~YLvVG~ic~~l~~~f~~~~l~~~r~~~d~ 343 (351)
T KOG2952|consen 311 LGIAYLVVGSICILLGLIFLVIYLFKPRRLGDP 343 (351)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHhhcccccCCc
Confidence 334444555555556666666655555444433
No 192
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=26.07 E-value=22 Score=25.96 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=0.0
Q ss_pred eeehhHHHHHH
Q 048080 179 LIKVVIQVIVL 189 (223)
Q Consensus 179 ~~~~~~~~~~~ 189 (223)
++++++++++.
T Consensus 131 LVGIIVGVLla 141 (162)
T PF05808_consen 131 LVGIIVGVLLA 141 (162)
T ss_dssp -----------
T ss_pred eeeehhhHHHH
Confidence 44444444333
No 193
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=26.04 E-value=65 Score=27.26 Aligned_cols=27 Identities=22% Similarity=0.129 Sum_probs=10.7
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHhc
Q 048080 179 LIKVVIQVIVLCLILVVFFIVVYGRRR 205 (223)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (223)
++.++.+++++++.++++++...+|++
T Consensus 340 lIlvl~~llG~~lg~~~vL~r~~~r~~ 366 (377)
T PRK10381 340 LIVILAALIGGMLACGFVLLRHAMRSR 366 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444344443333333
No 194
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=25.53 E-value=2.5e+02 Score=21.44 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=10.2
Q ss_pred CCCcceeeehhHHHHHHHHH
Q 048080 173 KSKFSILIKVVIQVIVLCLI 192 (223)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (223)
++...|.+..+|++.+.+++
T Consensus 59 ss~T~WvLY~VI~VSaaVIa 78 (207)
T PF10812_consen 59 SSGTPWVLYAVIGVSAAVIA 78 (207)
T ss_pred CCCCCEeehHHHHHHHHHHH
Confidence 34455666555555444333
No 195
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=25.37 E-value=16 Score=26.46 Aligned_cols=23 Identities=4% Similarity=-0.157 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhccCcccc
Q 048080 189 LCLILVVFFIVVYGRRRRSTQKS 211 (223)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~ 211 (223)
+.+.++++++++.++.++++++.
T Consensus 58 VGg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 58 VGGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred ccHHHHHHHHHhheeEEEecccC
Confidence 33444444455555555555554
No 196
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.21 E-value=1.3e+02 Score=24.36 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHhc
Q 048080 190 CLILVVFFIVVYGRRR 205 (223)
Q Consensus 190 ~~~~~~~~~~~~~~~~ 205 (223)
++++++.+++.+.+||
T Consensus 242 ~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 242 FLLVLIGIILAYIRRR 257 (281)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333333333344444
No 197
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=25.07 E-value=1.5e+02 Score=19.20 Aligned_cols=8 Identities=13% Similarity=0.430 Sum_probs=3.1
Q ss_pred HHHHHHhc
Q 048080 198 IVVYGRRR 205 (223)
Q Consensus 198 ~~~~~~~~ 205 (223)
+.+|.+++
T Consensus 71 ~g~y~~~k 78 (85)
T TIGR01495 71 LGYYYKKK 78 (85)
T ss_pred Hhhhhhcc
Confidence 33344433
No 198
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=24.68 E-value=26 Score=27.18 Aligned_cols=8 Identities=13% Similarity=0.098 Sum_probs=3.0
Q ss_pred HHHHhccC
Q 048080 200 VYGRRRRS 207 (223)
Q Consensus 200 ~~~~~~~~ 207 (223)
+|++-+|.
T Consensus 178 yYfK~~K~ 185 (218)
T PF14283_consen 178 YYFKFYKP 185 (218)
T ss_pred EEEEEecc
Confidence 44333333
No 199
>PHA03164 hypothetical protein; Provisional
Probab=23.79 E-value=1.2e+02 Score=19.12 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 048080 186 VIVLCLILVVFF 197 (223)
Q Consensus 186 ~~~~~~~~~~~~ 197 (223)
..++.+++.+++
T Consensus 65 gLaIamILfiif 76 (88)
T PHA03164 65 GLAIAMILFIIF 76 (88)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 200
>COG1288 Predicted membrane protein [Function unknown]
Probab=23.31 E-value=72 Score=27.59 Aligned_cols=13 Identities=8% Similarity=0.519 Sum_probs=5.5
Q ss_pred HHHHHHHHHhccC
Q 048080 195 VFFIVVYGRRRRS 207 (223)
Q Consensus 195 ~~~~~~~~~~~~~ 207 (223)
++++++|.+|-|+
T Consensus 231 i~y~~~Ya~Kvkk 243 (481)
T COG1288 231 IIYVYWYASKVKK 243 (481)
T ss_pred HHHHHHHHHHHhc
Confidence 3344444444333
No 201
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=23.22 E-value=1.5e+02 Score=16.65 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=3.3
Q ss_pred eehhHHHHH
Q 048080 180 IKVVIQVIV 188 (223)
Q Consensus 180 ~~~~~~~~~ 188 (223)
.+++++..+
T Consensus 4 ~V~~iilg~ 12 (49)
T PF05624_consen 4 FVVLIILGA 12 (49)
T ss_pred EEeHHHHHH
Confidence 333333333
No 202
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=23.10 E-value=1.2e+02 Score=27.67 Aligned_cols=23 Identities=13% Similarity=0.495 Sum_probs=12.2
Q ss_pred eeeehhHHHHHHHHHHHHHHHHH
Q 048080 178 ILIKVVIQVIVLCLILVVFFIVV 200 (223)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~ 200 (223)
.++++.+.++.+++.++++++..
T Consensus 392 ~~~~~f~~if~iva~ii~~~L~R 414 (807)
T KOG1094|consen 392 ILIIIFVAIFLIVALIIALMLWR 414 (807)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 203
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=23.01 E-value=46 Score=27.83 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=2.6
Q ss_pred CCCCCcc
Q 048080 171 SRKSKFS 177 (223)
Q Consensus 171 ~~~~~~~ 177 (223)
++....+
T Consensus 310 PP~d~~S 316 (350)
T PF15065_consen 310 PPVDSFS 316 (350)
T ss_pred CCccchh
Confidence 3333333
No 204
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=21.76 E-value=1.6e+02 Score=23.93 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCC
Q 048080 164 NENLCGGSRKSK 175 (223)
Q Consensus 164 n~~~C~~~~~~~ 175 (223)
|...|+++-...
T Consensus 32 N~TsCysPi~~i 43 (296)
T PF10361_consen 32 NGTSCYSPINPI 43 (296)
T ss_pred cCcccCCCCccc
Confidence 455687755443
No 205
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=21.05 E-value=1.2e+02 Score=24.41 Aligned_cols=11 Identities=36% Similarity=1.295 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 048080 190 CLILVVFFIVV 200 (223)
Q Consensus 190 ~~~~~~~~~~~ 200 (223)
++++++++++.
T Consensus 256 ~~v~~i~~~~~ 266 (278)
T PF03381_consen 256 CLVLAIIFLII 266 (278)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 206
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=20.10 E-value=65 Score=26.45 Aligned_cols=17 Identities=12% Similarity=0.048 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhccCc
Q 048080 192 ILVVFFIVVYGRRRRST 208 (223)
Q Consensus 192 ~~~~~~~~~~~~~~~~~ 208 (223)
+++.+++..+++-|-.+
T Consensus 210 G~aAliva~~cW~Rlqr 226 (341)
T PF06809_consen 210 GAAALIVAGYCWYRLQR 226 (341)
T ss_pred HHHHHHHhhheEEEecc
Confidence 33444555566665433
Done!