Query 048080
Match_columns 223
No_of_seqs 301 out of 2306
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 10:15:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o6q_A Variable lymphocyte rec 99.9 1.3E-25 4.4E-30 178.1 17.2 168 4-172 55-223 (270)
2 1ogq_A PGIP-2, polygalacturona 99.9 3.1E-26 1.1E-30 185.4 11.6 168 2-171 141-308 (313)
3 3m19_A Variable lymphocyte rec 99.9 4.6E-25 1.6E-29 173.1 17.3 167 1-170 28-195 (251)
4 2v9t_B SLIT homolog 2 protein 99.9 1.3E-25 4.5E-30 173.0 12.4 153 14-170 15-168 (220)
5 3rgz_A Protein brassinosteroid 99.9 9.7E-26 3.3E-30 202.5 12.9 168 2-170 506-743 (768)
6 1p9a_G Platelet glycoprotein I 99.9 6.1E-25 2.1E-29 176.1 15.0 165 3-171 48-212 (290)
7 2v70_A SLIT-2, SLIT homolog 2 99.9 3.9E-25 1.3E-29 170.4 13.2 150 2-153 26-175 (220)
8 1ozn_A Reticulon 4 receptor; N 99.9 7.8E-25 2.7E-29 174.7 15.3 169 3-172 73-243 (285)
9 2v9t_B SLIT homolog 2 protein 99.9 2.4E-24 8.2E-29 166.0 13.9 168 1-171 25-192 (220)
10 3rfs_A Internalin B, repeat mo 99.9 7.2E-24 2.5E-28 168.2 16.9 166 4-172 57-223 (272)
11 2xot_A Amphoterin-induced prot 99.9 3.3E-24 1.1E-28 176.8 12.9 167 1-171 32-206 (361)
12 2z66_A Variable lymphocyte rec 99.9 3.6E-24 1.2E-28 172.5 12.7 170 2-172 93-266 (306)
13 1w8a_A SLIT protein; signaling 99.9 3.4E-24 1.2E-28 161.7 11.2 157 12-172 10-167 (192)
14 1ozn_A Reticulon 4 receptor; N 99.9 6.4E-24 2.2E-28 169.4 13.0 169 3-172 98-266 (285)
15 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-23 4.2E-28 183.8 15.9 171 2-172 391-563 (606)
16 3m19_A Variable lymphocyte rec 99.9 2.6E-23 8.9E-28 163.1 16.0 144 3-147 52-195 (251)
17 2v70_A SLIT-2, SLIT homolog 2 99.9 1E-23 3.5E-28 162.4 13.1 156 12-171 13-170 (220)
18 1ogq_A PGIP-2, polygalacturona 99.9 6.3E-24 2.2E-28 171.9 12.2 142 2-145 68-211 (313)
19 3zyj_A Leucine-rich repeat-con 99.9 2.1E-23 7.3E-28 176.1 15.4 168 4-172 82-297 (440)
20 3e6j_A Variable lymphocyte rec 99.9 6.2E-23 2.1E-27 159.0 15.6 137 10-148 40-176 (229)
21 2z62_A TOLL-like receptor 4, v 99.9 2.7E-23 9.1E-28 165.1 13.7 168 4-172 46-242 (276)
22 3e6j_A Variable lymphocyte rec 99.9 6E-23 2E-27 159.0 15.0 156 11-171 20-176 (229)
23 3zyi_A Leucine-rich repeat-con 99.9 3.8E-23 1.3E-27 175.1 15.0 167 3-172 116-308 (452)
24 3rgz_A Protein brassinosteroid 99.9 4E-23 1.4E-27 185.5 15.6 164 2-166 482-716 (768)
25 3rfs_A Internalin B, repeat mo 99.9 1.2E-22 4.1E-27 161.2 15.5 146 4-150 79-224 (272)
26 3t6q_A CD180 antigen; protein- 99.9 7.8E-23 2.7E-27 178.7 15.6 169 3-172 393-565 (606)
27 2o6s_A Variable lymphocyte rec 99.9 2.5E-22 8.5E-27 153.1 16.0 145 2-149 22-166 (208)
28 2o6q_A Variable lymphocyte rec 99.9 2.9E-22 1E-26 158.7 15.7 147 2-149 76-223 (270)
29 3v47_A TOLL-like receptor 5B a 99.9 1E-22 3.5E-27 172.2 13.6 166 7-172 209-413 (455)
30 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-22 5.6E-27 176.8 15.0 171 2-172 412-585 (635)
31 2wfh_A SLIT homolog 2 protein 99.9 4.7E-23 1.6E-27 155.6 10.0 156 12-172 12-167 (193)
32 4fcg_A Uncharacterized protein 99.9 2.1E-22 7.3E-27 163.9 13.8 161 2-166 119-289 (328)
33 3j0a_A TOLL-like receptor 5; m 99.9 6.9E-23 2.4E-27 185.6 10.9 66 103-170 476-563 (844)
34 4fcg_A Uncharacterized protein 99.9 2.3E-22 8E-27 163.7 12.6 162 1-164 141-311 (328)
35 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-21 4.3E-26 173.3 16.6 172 6-178 450-634 (680)
36 2o6s_A Variable lymphocyte rec 99.9 2.4E-21 8E-26 147.7 15.3 156 12-171 9-165 (208)
37 2z66_A Variable lymphocyte rec 99.9 6.2E-22 2.1E-26 159.3 12.7 169 4-173 120-293 (306)
38 4g8a_A TOLL-like receptor 4; l 99.9 8.4E-22 2.9E-26 172.4 14.2 146 1-149 45-191 (635)
39 2id5_A Lingo-1, leucine rich r 99.9 8.1E-22 2.8E-26 167.8 13.7 168 3-171 145-337 (477)
40 2z62_A TOLL-like receptor 4, v 99.9 3E-21 1E-25 153.2 15.6 145 1-148 21-166 (276)
41 2z80_A TOLL-like receptor 2, v 99.9 9.7E-22 3.3E-26 161.3 12.4 167 3-171 93-318 (353)
42 2z63_A TOLL-like receptor 4, v 99.9 6.7E-22 2.3E-26 171.4 11.2 169 3-173 366-537 (570)
43 1p9a_G Platelet glycoprotein I 99.9 8.4E-21 2.9E-25 152.0 15.9 160 2-167 25-185 (290)
44 2z63_A TOLL-like receptor 4, v 99.9 2.4E-21 8.3E-26 167.9 12.2 170 3-173 389-562 (570)
45 1ziw_A TOLL-like receptor 3; i 99.9 6E-21 2.1E-25 169.0 14.4 171 2-173 472-656 (680)
46 2id5_A Lingo-1, leucine rich r 99.9 7.2E-21 2.5E-25 162.0 14.2 141 4-145 50-190 (477)
47 2xot_A Amphoterin-induced prot 99.9 1.9E-21 6.5E-26 160.3 10.2 147 3-150 56-208 (361)
48 3zyi_A Leucine-rich repeat-con 99.9 1.6E-20 5.6E-25 159.0 16.0 160 4-166 93-254 (452)
49 3v47_A TOLL-like receptor 5B a 99.9 7.9E-21 2.7E-25 160.6 13.9 140 10-150 275-414 (455)
50 3vq2_A TLR4, TOLL-like recepto 99.8 1.5E-20 5E-25 164.4 15.6 163 1-166 25-193 (606)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-20 3.9E-25 163.9 14.6 161 7-171 350-514 (562)
52 3zyj_A Leucine-rich repeat-con 99.8 1.9E-20 6.3E-25 158.1 15.2 160 1-164 57-217 (440)
53 2o6r_A Variable lymphocyte rec 99.8 1.4E-20 4.8E-25 139.9 12.8 135 11-149 8-142 (177)
54 3o6n_A APL1; leucine-rich repe 99.8 3E-20 1E-24 154.4 15.9 66 6-72 113-178 (390)
55 2ft3_A Biglycan; proteoglycan, 99.8 1.6E-20 5.6E-25 152.8 13.8 160 3-166 95-276 (332)
56 3oja_B Anopheles plasmodium-re 99.8 2.5E-20 8.7E-25 163.0 16.0 91 5-96 94-184 (597)
57 4eco_A Uncharacterized protein 99.8 1.8E-20 6E-25 165.1 15.0 163 2-169 418-602 (636)
58 1wwl_A Monocyte differentiatio 99.8 1.3E-21 4.5E-26 158.1 6.4 162 2-166 111-286 (312)
59 4eco_A Uncharacterized protein 99.8 2.6E-21 8.8E-26 170.4 8.5 97 51-148 239-347 (636)
60 1w8a_A SLIT protein; signaling 99.8 1.4E-20 4.8E-25 141.8 11.3 166 1-173 22-189 (192)
61 2xwt_C Thyrotropin receptor; s 99.8 6.7E-21 2.3E-25 148.2 9.8 158 5-166 50-217 (239)
62 3o6n_A APL1; leucine-rich repe 99.8 4.2E-20 1.4E-24 153.5 15.1 154 8-164 43-196 (390)
63 2z80_A TOLL-like receptor 2, v 99.8 7.7E-21 2.6E-25 156.0 10.5 142 2-146 46-189 (353)
64 3t6q_A CD180 antigen; protein- 99.8 2.5E-20 8.7E-25 162.8 14.3 161 2-165 27-190 (606)
65 1xku_A Decorin; proteoglycan, 99.8 3.4E-20 1.2E-24 150.8 14.1 160 3-166 93-275 (330)
66 1wwl_A Monocyte differentiatio 99.8 8.9E-21 3E-25 153.2 10.4 159 8-167 93-266 (312)
67 2xwt_C Thyrotropin receptor; s 99.8 1.1E-20 3.9E-25 146.8 10.1 158 1-165 25-190 (239)
68 2z7x_B TOLL-like receptor 1, v 99.8 3.2E-20 1.1E-24 159.5 13.3 160 7-171 321-485 (520)
69 4ezg_A Putative uncharacterize 99.8 4E-20 1.4E-24 139.8 12.0 153 6-166 40-193 (197)
70 3oja_A Leucine-rich immune mol 99.8 7.7E-21 2.6E-25 162.5 8.5 130 38-170 123-253 (487)
71 3oja_B Anopheles plasmodium-re 99.8 9.9E-20 3.4E-24 159.2 15.2 154 8-164 49-202 (597)
72 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-19 4.7E-24 147.3 14.9 163 2-168 117-308 (332)
73 4ecn_A Leucine-rich repeat pro 99.8 8.1E-21 2.8E-25 171.7 6.7 160 2-165 440-630 (876)
74 4ezg_A Putative uncharacterize 99.8 1.2E-19 4E-24 137.2 11.9 136 2-145 59-195 (197)
75 1xku_A Decorin; proteoglycan, 99.8 1.8E-19 6.1E-24 146.5 13.7 162 4-169 139-308 (330)
76 2z81_A CD282 antigen, TOLL-lik 99.8 3.8E-20 1.3E-24 159.9 10.0 145 1-148 19-165 (549)
77 2z7x_B TOLL-like receptor 1, v 99.8 1.2E-19 4.1E-24 156.0 12.1 168 2-173 340-512 (520)
78 4ecn_A Leucine-rich repeat pro 99.8 3.1E-20 1.1E-24 167.8 8.9 139 26-167 440-608 (876)
79 1h6u_A Internalin H; cell adhe 99.8 1.7E-19 5.8E-24 145.5 12.3 151 5-166 58-229 (308)
80 2ell_A Acidic leucine-rich nuc 99.8 1.9E-19 6.5E-24 132.6 11.5 135 8-145 22-161 (168)
81 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.1E-19 7.2E-24 156.0 13.6 147 2-152 369-518 (562)
82 2wfh_A SLIT homolog 2 protein 99.8 2.7E-19 9.3E-24 134.9 12.4 130 38-171 13-143 (193)
83 4glp_A Monocyte differentiatio 99.8 6.7E-20 2.3E-24 147.9 9.3 162 2-166 107-284 (310)
84 1h6u_A Internalin H; cell adhe 99.8 6.8E-19 2.3E-23 142.0 15.0 149 6-166 37-185 (308)
85 1h6t_A Internalin B; cell adhe 99.8 4.7E-19 1.6E-23 141.8 13.5 151 5-167 63-213 (291)
86 1xeu_A Internalin C; cellular 99.8 2.2E-19 7.4E-24 141.8 11.1 152 5-169 36-187 (263)
87 3j0a_A TOLL-like receptor 5; m 99.8 2.4E-19 8.1E-24 162.5 12.5 138 10-148 24-165 (844)
88 4fmz_A Internalin; leucine ric 99.8 1.1E-18 3.8E-23 142.5 14.4 148 8-165 197-344 (347)
89 4glp_A Monocyte differentiatio 99.8 1.9E-19 6.6E-24 145.2 9.6 157 6-167 141-307 (310)
90 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-19 4.2E-24 146.8 8.3 161 6-170 76-253 (317)
91 2z81_A CD282 antigen, TOLL-lik 99.8 9.7E-20 3.3E-24 157.3 8.1 162 3-166 43-208 (549)
92 1a9n_A U2A', U2A'; complex (nu 99.8 1.4E-19 4.7E-24 134.4 7.8 136 4-145 13-154 (176)
93 2je0_A Acidic leucine-rich nuc 99.8 3E-19 1E-23 128.9 8.7 127 10-139 17-148 (149)
94 3oja_A Leucine-rich immune mol 99.8 1.7E-19 6E-24 154.1 8.4 159 4-167 52-227 (487)
95 1m9s_A Internalin B; cell inva 99.8 2.8E-18 9.6E-23 150.0 14.8 150 5-166 60-209 (605)
96 2o6r_A Variable lymphocyte rec 99.8 4.9E-18 1.7E-22 126.1 12.6 120 2-124 22-141 (177)
97 3o53_A Protein LRIM1, AGAP0063 99.8 1.7E-18 5.8E-23 140.1 11.0 154 9-167 33-227 (317)
98 1h6t_A Internalin B; cell adhe 99.8 4.4E-18 1.5E-22 136.2 12.4 149 6-166 42-190 (291)
99 3g39_A Variable lymphocyte rec 99.8 6.5E-18 2.2E-22 124.8 12.1 108 38-148 12-119 (170)
100 4b8c_D Glucose-repressible alc 99.8 2.2E-19 7.6E-24 160.1 4.2 141 3-148 217-358 (727)
101 2je0_A Acidic leucine-rich nuc 99.8 4.4E-18 1.5E-22 122.7 10.2 127 34-162 16-148 (149)
102 1xeu_A Internalin C; cellular 99.8 9.6E-18 3.3E-22 132.3 12.9 132 2-146 56-187 (263)
103 2ell_A Acidic leucine-rich nuc 99.7 4.4E-18 1.5E-22 125.2 9.6 131 34-166 23-159 (168)
104 1o6v_A Internalin A; bacterial 99.7 7.2E-18 2.4E-22 143.2 12.2 152 5-168 238-389 (466)
105 2r9u_A Variable lymphocyte rec 99.7 2.5E-17 8.5E-22 122.1 12.1 108 38-148 15-122 (174)
106 3g39_A Variable lymphocyte rec 99.7 2E-17 7E-22 122.1 11.1 109 11-123 10-118 (170)
107 4fmz_A Internalin; leucine ric 99.7 4.2E-17 1.5E-21 133.1 14.0 152 6-168 173-325 (347)
108 1dce_A Protein (RAB geranylger 99.7 1.4E-18 4.7E-23 151.0 3.4 109 36-149 442-551 (567)
109 1m9s_A Internalin B; cell inva 99.7 3.9E-17 1.3E-21 142.8 12.3 149 6-166 39-187 (605)
110 1o6v_A Internalin A; bacterial 99.7 1.2E-16 4.2E-21 135.6 14.5 103 55-164 239-341 (466)
111 2r9u_A Variable lymphocyte rec 99.7 7.2E-17 2.5E-21 119.6 10.9 107 12-122 14-120 (174)
112 2ca6_A RAN GTPase-activating p 99.7 1.5E-18 5E-23 144.0 0.8 110 57-166 185-315 (386)
113 4ay9_X Follicle-stimulating ho 99.7 6.3E-17 2.1E-21 132.6 10.2 163 1-167 23-215 (350)
114 2ast_B S-phase kinase-associat 99.7 7.6E-18 2.6E-22 136.9 4.5 162 3-165 86-258 (336)
115 3cvr_A Invasion plasmid antige 99.7 2.3E-16 7.9E-21 136.8 13.4 14 83-96 160-173 (571)
116 1a9n_A U2A', U2A'; complex (nu 99.7 1.3E-16 4.3E-21 118.3 10.1 129 32-165 16-151 (176)
117 3bz5_A Internalin-J, INLJ; leu 99.7 4.9E-16 1.7E-20 131.7 15.1 83 5-97 59-141 (457)
118 3cvr_A Invasion plasmid antige 99.7 4.8E-16 1.6E-20 134.8 14.6 120 2-144 74-193 (571)
119 4b8c_D Glucose-repressible alc 99.7 4.7E-17 1.6E-21 145.2 8.1 121 26-150 215-335 (727)
120 1dce_A Protein (RAB geranylger 99.7 2.5E-16 8.5E-21 136.8 12.3 122 11-138 442-567 (567)
121 2ifg_A High affinity nerve gro 99.7 2E-16 6.8E-21 129.3 11.1 108 40-150 13-122 (347)
122 3bz5_A Internalin-J, INLJ; leu 99.7 1E-15 3.6E-20 129.7 15.7 145 6-165 81-244 (457)
123 4ay9_X Follicle-stimulating ho 99.7 2.2E-16 7.5E-21 129.4 10.3 161 2-165 45-234 (350)
124 3goz_A Leucine-rich repeat-con 99.7 1.6E-17 5.4E-22 136.8 3.1 162 6-167 46-238 (362)
125 2ast_B S-phase kinase-associat 99.7 1.3E-17 4.3E-22 135.6 1.6 161 3-164 111-282 (336)
126 1ds9_A Outer arm dynein; leuci 99.7 6.9E-19 2.4E-23 133.1 -5.7 139 6-149 14-158 (198)
127 1jl5_A Outer protein YOPM; leu 99.7 2.1E-16 7.3E-21 133.9 8.5 97 59-166 131-227 (454)
128 1ds9_A Outer arm dynein; leuci 99.6 1.7E-18 5.8E-23 130.9 -4.4 136 2-145 40-186 (198)
129 2ca6_A RAN GTPase-activating p 99.6 2.2E-17 7.4E-22 136.9 1.0 107 59-165 159-285 (386)
130 3goz_A Leucine-rich repeat-con 99.6 6.1E-17 2.1E-21 133.3 3.4 62 36-97 52-123 (362)
131 1jl5_A Outer protein YOPM; leu 99.6 7.9E-15 2.7E-19 124.2 15.1 126 2-145 146-271 (454)
132 2ifg_A High affinity nerve gro 99.6 1.8E-15 6E-20 123.7 8.5 132 13-148 11-145 (347)
133 1z7x_W Ribonuclease inhibitor; 99.6 1.9E-16 6.4E-21 133.9 0.4 119 3-121 49-184 (461)
134 3g06_A SSPH2 (leucine-rich rep 99.6 3.8E-14 1.3E-18 124.2 14.5 61 2-73 55-115 (622)
135 3g06_A SSPH2 (leucine-rich rep 99.6 3.8E-14 1.3E-18 124.2 14.3 75 83-166 221-296 (622)
136 1z7x_W Ribonuclease inhibitor; 99.6 6.8E-17 2.3E-21 136.6 -3.2 86 10-96 199-297 (461)
137 3sb4_A Hypothetical leucine ri 99.5 1.1E-13 3.7E-18 112.4 11.8 56 9-66 100-155 (329)
138 3sb4_A Hypothetical leucine ri 99.5 1E-13 3.5E-18 112.5 11.2 140 4-146 118-312 (329)
139 3un9_A NLR family member X1; l 99.4 3.3E-14 1.1E-18 117.4 1.9 157 10-166 72-251 (372)
140 3un9_A NLR family member X1; l 99.4 4E-14 1.4E-18 116.9 0.1 137 9-145 100-253 (372)
141 4fdw_A Leucine rich hypothetic 99.3 5.6E-11 1.9E-15 99.0 13.5 157 4-165 174-356 (401)
142 4fdw_A Leucine rich hypothetic 99.2 1.1E-10 3.7E-15 97.3 11.5 135 4-145 220-359 (401)
143 3ogk_B Coronatine-insensitive 99.2 5.8E-12 2E-16 109.5 3.3 132 8-140 110-252 (592)
144 3ogk_B Coronatine-insensitive 99.2 2.3E-12 8E-17 112.0 0.0 133 33-165 376-524 (592)
145 2p1m_B Transport inhibitor res 99.0 5.2E-11 1.8E-15 103.5 1.1 86 79-165 428-517 (594)
146 2p1m_B Transport inhibitor res 98.9 3.9E-10 1.3E-14 98.0 4.0 131 8-139 103-243 (594)
147 3rw6_A Nuclear RNA export fact 98.9 1.2E-10 4.1E-15 91.5 -1.2 67 80-148 167-237 (267)
148 2ra8_A Uncharacterized protein 98.8 7.7E-10 2.6E-14 90.8 2.3 157 4-164 133-317 (362)
149 1io0_A Tropomodulin; LRR prote 98.8 1.1E-09 3.6E-14 81.6 1.7 111 34-144 35-164 (185)
150 3rw6_A Nuclear RNA export fact 98.8 9.7E-10 3.3E-14 86.3 1.1 96 40-137 148-257 (267)
151 2ra8_A Uncharacterized protein 98.8 9.4E-09 3.2E-13 84.4 6.0 136 6-145 168-321 (362)
152 1io0_A Tropomodulin; LRR prote 98.7 1.7E-09 5.8E-14 80.5 0.3 116 5-120 31-164 (185)
153 4gt6_A Cell surface protein; l 98.6 2.5E-07 8.6E-12 76.6 10.6 115 25-143 255-369 (394)
154 4h09_A Hypothetical leucine ri 98.6 7.4E-07 2.5E-11 73.2 11.7 133 4-141 211-343 (379)
155 4h09_A Hypothetical leucine ri 98.5 6.9E-07 2.4E-11 73.4 10.5 124 4-132 234-357 (379)
156 4fs7_A Uncharacterized protein 98.5 1E-06 3.5E-11 72.9 11.2 128 6-141 249-376 (394)
157 4fs7_A Uncharacterized protein 98.4 7.4E-07 2.5E-11 73.7 8.6 132 4-140 65-217 (394)
158 4gt6_A Cell surface protein; l 98.4 3.1E-06 1.1E-10 70.0 11.0 89 50-141 256-344 (394)
159 3rfe_A Platelet glycoprotein I 98.3 8.3E-07 2.8E-11 62.0 6.1 87 86-174 11-100 (130)
160 3e4g_A ATP synthase subunit S, 98.3 2.7E-07 9.1E-12 67.7 3.3 84 59-142 61-150 (176)
161 3e4g_A ATP synthase subunit S, 98.1 5.5E-07 1.9E-11 66.0 1.1 86 35-120 61-153 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 2.1E-05 7.2E-10 58.7 2.7 83 59-141 41-136 (197)
163 3rfe_A Platelet glycoprotein I 97.6 0.00012 4E-09 50.9 6.3 37 84-120 32-68 (130)
164 2ks1_B Epidermal growth factor 97.2 0.00062 2.1E-08 37.3 4.6 10 199-208 32-41 (44)
165 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00023 7.7E-09 53.0 2.9 109 34-142 40-168 (197)
166 2jwa_A Receptor tyrosine-prote 96.8 0.0017 5.9E-08 35.4 3.6 10 199-208 32-41 (44)
167 2l2t_A Receptor tyrosine-prote 96.4 0.0049 1.7E-07 33.7 3.9 10 199-208 31-40 (44)
168 2jwa_A Receptor tyrosine-prote 95.2 0.016 5.4E-07 31.6 2.8 14 194-207 30-43 (44)
169 2lz0_A Uncharacterized protein 87.0 2.3 7.8E-05 27.5 6.2 47 46-93 7-53 (100)
170 1iij_A ERBB-2 receptor protein 79.4 0.7 2.4E-05 23.7 1.0 7 199-205 28-34 (35)
171 2lz0_A Uncharacterized protein 78.9 6.6 0.00023 25.2 6.0 48 69-117 6-53 (100)
172 2l2t_A Receptor tyrosine-prote 68.9 9 0.00031 20.6 3.8 15 197-211 26-40 (44)
173 2l8s_A Integrin alpha-1; trans 68.7 8.1 0.00028 21.8 3.7 34 183-216 13-46 (54)
174 2ks1_B Epidermal growth factor 66.8 7.3 0.00025 21.0 3.2 14 198-211 28-41 (44)
175 2knc_B Integrin beta-3; transm 65.6 0.59 2E-05 29.0 -1.5 7 183-189 14-20 (79)
176 2k21_A Potassium voltage-gated 64.3 14 0.00049 24.8 4.9 6 217-222 92-97 (138)
177 1cd1_A CD1, MCD1D.1; immunolog 58.8 2 6.9E-05 34.0 0.0 6 199-204 303-308 (315)
178 2knc_B Integrin beta-3; transm 54.5 13 0.00045 22.8 3.2 16 180-195 15-30 (79)
179 2knc_A Integrin alpha-IIB; tra 51.6 26 0.00089 19.7 3.8 28 183-210 16-43 (54)
180 1zza_A Stannin, AG8_1; helix, 44.0 50 0.0017 19.7 4.6 20 194-213 31-50 (90)
181 2jo1_A Phospholemman; FXYD1, N 42.6 52 0.0018 19.5 4.8 8 203-210 43-50 (72)
182 2lx0_A Membrane fusion protein 41.0 30 0.001 16.3 2.9 7 183-189 9-15 (32)
No 1
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.3e-25 Score=178.11 Aligned_cols=168 Identities=23% Similarity=0.210 Sum_probs=151.6
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT 83 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 83 (223)
.+|+++++|++|++++|.+. .+|...|...+.|++|++++|.+....+..|..+++|++|++++|.+++..+..|..++
T Consensus 55 ~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 55 KAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133 (270)
T ss_dssp TSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc
Confidence 47999999999999999998 89988888888999999999999988888899999999999999999988888899999
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeec
Q 048080 84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLV 162 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~ 162 (223)
+|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+. ......++.+++.
T Consensus 134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 999999999999977777799999999999999999988888899999999999999999865443 2446778899999
Q ss_pred CCCCCCCCCC
Q 048080 163 GNENLCGGSR 172 (223)
Q Consensus 163 ~n~~~C~~~~ 172 (223)
+|++.|+|..
T Consensus 214 ~N~~~c~c~~ 223 (270)
T 2o6q_A 214 ENPWDCTCNG 223 (270)
T ss_dssp SSCBCCSSSS
T ss_pred CCCeeCCCcc
Confidence 9999999953
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=3.1e-26 Score=185.44 Aligned_cols=168 Identities=28% Similarity=0.469 Sum_probs=123.9
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
+|..|+++++|++|++++|++.+.+|..+....+.|++|++++|.+++..|..|..++ |++|++++|.+++..|..|..
T Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~ 219 (313)
T 1ogq_A 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS 219 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT
T ss_pred CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc
Confidence 4555555555666666555555555555544443556666666666655565555554 666666666666666667777
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceee
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISL 161 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~ 161 (223)
+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|....+..++.+++
T Consensus 220 l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l 298 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298 (313)
T ss_dssp TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence 77888888888887766555 77788899999999999988999999999999999999999998888777888899999
Q ss_pred cCCCCCCCCC
Q 048080 162 VGNENLCGGS 171 (223)
Q Consensus 162 ~~n~~~C~~~ 171 (223)
.+|++.|+.+
T Consensus 299 ~~N~~lc~~p 308 (313)
T 1ogq_A 299 ANNKCLCGSP 308 (313)
T ss_dssp CSSSEEESTT
T ss_pred cCCCCccCCC
Confidence 9999999854
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=4.6e-25 Score=173.12 Aligned_cols=167 Identities=21% Similarity=0.233 Sum_probs=147.8
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
+||..+. ++++.|++++|.+. .++...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.
T Consensus 28 ~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 104 (251)
T 3m19_A 28 SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104 (251)
T ss_dssp SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc
Confidence 3676665 68999999999998 67766677788889999999999988888899999999999999999988888899
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcce
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGI 159 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l 159 (223)
.+++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|++++|++.+..+. ......++.+
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 999999999999999988777889999999999999999988777899999999999999999976553 3456788899
Q ss_pred eecCCCCCCCC
Q 048080 160 SLVGNENLCGG 170 (223)
Q Consensus 160 ~~~~n~~~C~~ 170 (223)
++.+|++.|++
T Consensus 185 ~l~~N~~~c~~ 195 (251)
T 3m19_A 185 TLFGNQFDCSR 195 (251)
T ss_dssp ECCSCCBCTTS
T ss_pred EeeCCceeCCc
Confidence 99999999983
No 4
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.93 E-value=1.3e-25 Score=173.02 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=71.0
Q ss_pred eeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccC
Q 048080 14 LLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN 93 (223)
Q Consensus 14 ~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 93 (223)
.++.++++++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.++++.|+.|.++++|++|+|++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3444444444 4444322 33344555555544444444444445555555555544444444444555555555555
Q ss_pred cccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeecCCCCCCCC
Q 048080 94 SFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLVGNENLCGG 170 (223)
Q Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~~n~~~C~~ 170 (223)
+++...+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+++..+. ......++.+++.+|++.|+|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 54433333444444555555555555444444444444555555555544433321 122334444445555554444
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=9.7e-26 Score=202.45 Aligned_cols=168 Identities=35% Similarity=0.570 Sum_probs=137.1
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCc----------------------------
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPA---------------------------- 53 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~---------------------------- 53 (223)
+|.+|+++++|++|++++|++.+.+|..+. ..+.|++|++++|.+.+.+|.
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 566666666777777777776666665543 345557777777766655443
Q ss_pred ------------------------------------------CCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080 54 ------------------------------------------EVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ 91 (223)
Q Consensus 54 ------------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (223)
.|..+++|+.|++++|.+++.+|..++.+++|+.|+|+
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 664 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCc
Confidence 23345678888888888888999999999999999999
Q ss_pred cCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCCCCC
Q 048080 92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG 170 (223)
Q Consensus 92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~~ 170 (223)
+|+++|.+|..++.+++|+.|||++|+++|.+|..+..++.|+.|++++|+++|.+|....+..+....+.||+..|+.
T Consensus 665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 9999999999999999999999999999999999999999999999999999999998777778888889999999975
No 6
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=6.1e-25 Score=176.09 Aligned_cols=165 Identities=24% Similarity=0.182 Sum_probs=138.0
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC 82 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 82 (223)
|.+|.++++|++|++++|.+. .++.. ...+.|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+
T Consensus 48 ~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l 123 (290)
T 1p9a_G 48 LATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123 (290)
T ss_dssp GGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC
T ss_pred HHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCC
Confidence 456777778888888888877 55543 45667788888888888 667778899999999999999998888889999
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeec
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLV 162 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~ 162 (223)
++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++...+.......++.+++.
T Consensus 124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 99999999999999888888899999999999999999777777888999999999999999544433445678899999
Q ss_pred CCCCCCCCC
Q 048080 163 GNENLCGGS 171 (223)
Q Consensus 163 ~n~~~C~~~ 171 (223)
+|||.|+|.
T Consensus 204 ~Np~~C~c~ 212 (290)
T 1p9a_G 204 GNPWLCNCE 212 (290)
T ss_dssp SCCBCCSGG
T ss_pred CCCccCcCc
Confidence 999999983
No 7
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.93 E-value=3.9e-25 Score=170.38 Aligned_cols=150 Identities=18% Similarity=0.181 Sum_probs=109.8
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
||..+. ..+++|++++|.+.+..|...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..
T Consensus 26 iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 103 (220)
T 2v70_A 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG 103 (220)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT
T ss_pred CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC
Confidence 555554 345777777777773334555666677777788777777777777777777888888877777776777777
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhh
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIF 153 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~ 153 (223)
+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++.|.++..+..
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~ 175 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLG 175 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHH
Confidence 777888888888777777777777777788888877777777777777777777888888777777655443
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=7.8e-25 Score=174.71 Aligned_cols=169 Identities=20% Similarity=0.163 Sum_probs=135.1
Q ss_pred CCCCCCCCCCCeeecccCc-cccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 3 PPSLGNCQNLILLTTCKNK-LSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
|.+|+++++|++|++++|. +. .++...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 151 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred HhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc
Confidence 5677777888888888876 65 665555666677788888888888777777888888888888888888777777888
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCccee
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGIS 160 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~ 160 (223)
+++|+.|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+. ......++.++
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 88888888888888877666788888899999999988888888888889999999999988864433 24467788899
Q ss_pred ecCCCCCCCCCC
Q 048080 161 LVGNENLCGGSR 172 (223)
Q Consensus 161 ~~~n~~~C~~~~ 172 (223)
+.+|++.|+|..
T Consensus 232 l~~N~~~c~~~~ 243 (285)
T 1ozn_A 232 LNDNPWVCDCRA 243 (285)
T ss_dssp CCSSCEECSGGG
T ss_pred ccCCCccCCCCc
Confidence 999999998844
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.92 E-value=2.4e-24 Score=165.96 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=146.4
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
+||..+. ++|+.|++++|++. .++...+...+.|++|++++|.+++..|..|.++++|++|++++|.++.+.+..|.
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence 4676665 68999999999998 78887788888999999999999999999999999999999999999988777899
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCccee
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGIS 160 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~ 160 (223)
++++|+.|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|+.+++++|++.|.+...+....+....
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~ 181 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNP 181 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCC
Confidence 99999999999999999989999999999999999999998888889999999999999999999988765544443333
Q ss_pred ecCCCCCCCCC
Q 048080 161 LVGNENLCGGS 171 (223)
Q Consensus 161 ~~~n~~~C~~~ 171 (223)
.......|..+
T Consensus 182 ~~~~~~~C~~P 192 (220)
T 2v9t_B 182 IETSGARCTSP 192 (220)
T ss_dssp CBCSCCBEEES
T ss_pred CCccCCCcCCc
Confidence 33444456554
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=7.2e-24 Score=168.23 Aligned_cols=166 Identities=23% Similarity=0.192 Sum_probs=148.6
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT 83 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 83 (223)
++++.+++|++|++++|.+. .++ .+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..++
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence 46888999999999999998 554 355677889999999999988888899999999999999999988888899999
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeec
Q 048080 84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLV 162 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~ 162 (223)
+|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+.. .....++.+++.
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 9999999999999888888899999999999999999888888899999999999999999866643 557789999999
Q ss_pred CCCCCCCCCC
Q 048080 163 GNENLCGGSR 172 (223)
Q Consensus 163 ~n~~~C~~~~ 172 (223)
+|++.|+|+.
T Consensus 214 ~N~~~~~~~~ 223 (272)
T 3rfs_A 214 DNPWDCTCPG 223 (272)
T ss_dssp SSCBCCCTTT
T ss_pred CCCccccCcH
Confidence 9999999863
No 11
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.91 E-value=3.3e-24 Score=176.82 Aligned_cols=167 Identities=24% Similarity=0.244 Sum_probs=142.8
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhh-ccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLR-IITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTL 79 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 79 (223)
+||..+. +.++.|++++|.+. .++...+. ..+.|++|+|++|.+++..+..|..+++|++|+|++|.++++.+..|
T Consensus 32 ~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 108 (361)
T 2xot_A 32 NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108 (361)
T ss_dssp SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHh
Confidence 3676665 46899999999998 78877776 78888999999999998888999999999999999999998888899
Q ss_pred cCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhh---hCCCCCCEEeccCCcCcccCCch--hhhc
Q 048080 80 GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYL---ENLSFLSFLNLSYNHFEGKVPIE--AIFN 154 (223)
Q Consensus 80 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~l~l~~N~l~~~~~~~--~~~~ 154 (223)
..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..| ..+++|+.|++++|+++. ++.. ..+.
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~ 187 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLP 187 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSC
T ss_pred CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhcc
Confidence 999999999999999998889999999999999999999997666666 568999999999999995 4422 1222
Q ss_pred C--CcceeecCCCCCCCCC
Q 048080 155 S--TKGISLVGNENLCGGS 171 (223)
Q Consensus 155 ~--l~~l~~~~n~~~C~~~ 171 (223)
. +..+++.+|++.|+|.
T Consensus 188 ~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 188 AWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp HHHHTTEECCSSCEECCHH
T ss_pred HhhcceEEecCCCccCCcC
Confidence 2 3668999999999984
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=3.6e-24 Score=172.47 Aligned_cols=170 Identities=20% Similarity=0.242 Sum_probs=147.1
Q ss_pred CCCCCCCCCCCCeeecccCccccCCCh-hhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc-cCCccc
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPR-QLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG-EIPTTL 79 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~-~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~ 79 (223)
+|+.+.++++|++|++++|.+. .++. ..+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++ ..|..+
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 4666888899999999999998 5654 566777888999999999998888889999999999999999986 578889
Q ss_pred cCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhh-cCCc
Q 048080 80 GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIF-NSTK 157 (223)
Q Consensus 80 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~-~~l~ 157 (223)
..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+.. ... ..++
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 99999999999999999888889999999999999999999887778999999999999999999876643 223 4788
Q ss_pred ceeecCCCCCCCCCC
Q 048080 158 GISLVGNENLCGGSR 172 (223)
Q Consensus 158 ~l~~~~n~~~C~~~~ 172 (223)
.+++++|++.|+|..
T Consensus 252 ~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 252 FLNLTQNDFACTCEH 266 (306)
T ss_dssp EEECTTCCEECSGGG
T ss_pred EEEccCCCeecccCh
Confidence 999999999999853
No 13
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.91 E-value=3.4e-24 Score=161.74 Aligned_cols=157 Identities=25% Similarity=0.352 Sum_probs=137.7
Q ss_pred CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCc-CCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080 12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPA-EVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM 90 (223)
Q Consensus 12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 90 (223)
-+.+++++|++. ++|..++. .+++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|.++++|+.|+|
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 378999999997 99986644 679999999999977764 5899999999999999999999999999999999999
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCCCCC
Q 048080 91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG 170 (223)
Q Consensus 91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~~ 170 (223)
++|++++..+..|..+++|++|+|++|++++..|..+..+++|+.|++++|++.|.++..+....+....+.++...|..
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCC
Confidence 99999999998999999999999999999999999999999999999999999999987665554544455566666765
Q ss_pred CC
Q 048080 171 SR 172 (223)
Q Consensus 171 ~~ 172 (223)
+.
T Consensus 166 P~ 167 (192)
T 1w8a_A 166 PS 167 (192)
T ss_dssp ST
T ss_pred Ch
Confidence 44
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=6.4e-24 Score=169.38 Aligned_cols=169 Identities=22% Similarity=0.226 Sum_probs=152.2
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC 82 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 82 (223)
|..|.++++|++|++++|.+. .++...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred HHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence 678999999999999999998 6766667778888999999999998877889999999999999999998877789999
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeec
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLV 162 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~ 162 (223)
++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.+++++|++.|.++..+....++.....
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~ 256 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS 256 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSE
T ss_pred cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccc
Confidence 99999999999999998999999999999999999999888888999999999999999999999887766667777777
Q ss_pred CCCCCCCCCC
Q 048080 163 GNENLCGGSR 172 (223)
Q Consensus 163 ~n~~~C~~~~ 172 (223)
.+...|..+.
T Consensus 257 ~~~~~c~~p~ 266 (285)
T 1ozn_A 257 SSEVPCSLPQ 266 (285)
T ss_dssp ECCCBEEESG
T ss_pred cCccccCCch
Confidence 7777776544
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.2e-23 Score=183.84 Aligned_cols=171 Identities=19% Similarity=0.178 Sum_probs=152.3
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc-cCCcccc
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG-EIPTTLG 80 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~ 80 (223)
+|..|.++++|+.|++++|.+.+..|...+...+.|++|++++|.+.+..|..|..+++|++|++++|.+++ ..|..|.
T Consensus 391 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 470 (606)
T 3vq2_A 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470 (606)
T ss_dssp ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc
Confidence 577889999999999999999855554667778888999999999999899999999999999999999997 4788999
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhc-CCcce
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFN-STKGI 159 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~-~l~~l 159 (223)
.+++|+.|++++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++...+...... .++.+
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999995443333343 58999
Q ss_pred eecCCCCCCCCCC
Q 048080 160 SLVGNENLCGGSR 172 (223)
Q Consensus 160 ~~~~n~~~C~~~~ 172 (223)
++.+|++.|+|..
T Consensus 551 ~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 551 NLTNNSVACICEH 563 (606)
T ss_dssp ECCSCCCCCSSTT
T ss_pred EccCCCcccCCcc
Confidence 9999999999964
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.6e-23 Score=163.11 Aligned_cols=144 Identities=20% Similarity=0.212 Sum_probs=133.9
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC 82 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 82 (223)
|.+|.++++|++|++++|.+. .++...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+
T Consensus 52 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 130 (251)
T 3m19_A 52 DATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred HhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC
Confidence 457999999999999999998 6777777888899999999999998888899999999999999999998888889999
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccC
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKV 147 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 147 (223)
++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.|..
T Consensus 131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 99999999999999887878999999999999999999888889999999999999999999873
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=162.40 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=140.3
Q ss_pred CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCC-cCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080 12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP-AEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM 90 (223)
Q Consensus 12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 90 (223)
-+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.++++.+..|..+++|++|++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 468999999998 8997653 445899999999998755 56899999999999999999988889999999999999
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeecCCCCCCC
Q 048080 91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLVGNENLCG 169 (223)
Q Consensus 91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~ 169 (223)
++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+++..|.. .....++.+++.+|++.|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999999888888999999999999999999998999999999999999999999876533 4567888999999999999
Q ss_pred CC
Q 048080 170 GS 171 (223)
Q Consensus 170 ~~ 171 (223)
|.
T Consensus 169 c~ 170 (220)
T 2v70_A 169 CY 170 (220)
T ss_dssp GG
T ss_pred Cc
Confidence 85
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=6.3e-24 Score=171.87 Aligned_cols=142 Identities=34% Similarity=0.558 Sum_probs=76.3
Q ss_pred CCCCCCCCCCCCeeeccc-CccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 2 RPPSLGNCQNLILLTTCK-NKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~-n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
+|++|+++++|++|++++ |.+.+.+|..+ ..++.|++|++++|.+++..|..|..+++|++|++++|.+++..|..|.
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 455555666666666653 55554555443 2334445555555555555555555555555555555555555555555
Q ss_pred CCCCCcEEEcccCcccccCCccccCCC-CCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLK-SITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 145 (223)
.+++|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+.+
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 555555555555555555555555554 555555555555544444444443 4444444444443
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=176.08 Aligned_cols=168 Identities=19% Similarity=0.195 Sum_probs=106.1
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCc------
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT------ 77 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------ 77 (223)
.+|.++++|++|++++|.+. .++...|..++.|++|+|++|.++...+..|..+++|++|++++|.++.+.+.
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 160 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT
T ss_pred HHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc
Confidence 45555666666666666655 45544455555555555555555544444555555555555555554433221
Q ss_pred -------------------cccC----------------------CCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080 78 -------------------TLGG----------------------CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116 (223)
Q Consensus 78 -------------------~~~~----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 116 (223)
.|.+ +++|+.|++++|.+++..|..|.++++|+.|++++
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 2333 33455555555566655566677777777777777
Q ss_pred CccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeecCCCCCCCCCC
Q 048080 117 NNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLVGNENLCGGSR 172 (223)
Q Consensus 117 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~~~~ 172 (223)
|++++..+..|..+++|+.|++++|+++...+.. .....++.+++.+||+.|+|..
T Consensus 241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 7777777777788888888888888888544432 3457788899999999999954
No 20
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.90 E-value=6.2e-23 Score=158.96 Aligned_cols=137 Identities=21% Similarity=0.222 Sum_probs=68.7
Q ss_pred CCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEE
Q 048080 10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLS 89 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 89 (223)
++|++|++++|.+. .++...+..++.|++|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 44555555555554 33333334444445555555555444444445555555555555555544444455555555555
Q ss_pred cccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCC
Q 048080 90 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 90 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 148 (223)
+++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++.|.++
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 5555555 344444555555555555555554444445555555555555555555443
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.7e-23 Score=165.07 Aligned_cols=168 Identities=20% Similarity=0.178 Sum_probs=119.7
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT 83 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 83 (223)
.+|+++++|++|++++|.+. .++...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..++
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 46 YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (276)
T ss_dssp TTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred hHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC
Confidence 36777778888888888777 66665666667778888888888777777777778888888888877766666677778
Q ss_pred CCcEEEcccCccccc-CCccccCCCCCCEEECCCCccccccchhhhCCC---------------------------CCCE
Q 048080 84 SLEHLSMQDNSFTGS-IPSTLSSLKSITELDLSRNNLSGHIPQYLENLS---------------------------FLSF 135 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~---------------------------~L~~ 135 (223)
+|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..++ +|+.
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence 888888888887753 477777778888888888877765554443332 4555
Q ss_pred EeccCCcCcccCCch-hhhcCCcceeecCCCCCCCCCC
Q 048080 136 LNLSYNHFEGKVPIE-AIFNSTKGISLVGNENLCGGSR 172 (223)
Q Consensus 136 l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~~~~ 172 (223)
|++++|.+++..+.. .....++.+++.+|++.|+|+.
T Consensus 205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred EECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 566666665433322 3456777889999999999854
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.90 E-value=6e-23 Score=159.05 Aligned_cols=156 Identities=22% Similarity=0.245 Sum_probs=140.0
Q ss_pred CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080 11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM 90 (223)
Q Consensus 11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 90 (223)
..+.++.+++++. .+|..+. +.|++|++++|.+++..+..|..+++|++|++++|.++.+.+..|..+++|+.|+|
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4577999999998 9997653 67799999999999988999999999999999999999887788999999999999
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeecCCCCCCC
Q 048080 91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLVGNENLCG 169 (223)
Q Consensus 91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~~n~~~C~ 169 (223)
++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|++++|++.+..+. ......++.+++.+|++.|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999999888888999999999999999999 7788899999999999999999965543 24567888999999999999
Q ss_pred CC
Q 048080 170 GS 171 (223)
Q Consensus 170 ~~ 171 (223)
|.
T Consensus 175 c~ 176 (229)
T 3e6j_A 175 CR 176 (229)
T ss_dssp BG
T ss_pred cc
Confidence 85
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=3.8e-23 Score=175.12 Aligned_cols=167 Identities=20% Similarity=0.169 Sum_probs=126.9
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcC-------------------------CCC
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAE-------------------------VGN 57 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~-------------------------~~~ 57 (223)
|.+|.++++|++|++++|.+. .+|...+..++.|++|++++|.+....+.. |.+
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 194 (452)
T 3zyi_A 116 VGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred hhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence 467777788888888888877 677766666777777777777777555444 445
Q ss_pred CCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEe
Q 048080 58 LKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN 137 (223)
Q Consensus 58 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ 137 (223)
+++|++|++++|.+++. | .+..+++|+.|++++|.+++..|..|.++++|+.|++++|++++..+..|..+++|+.|+
T Consensus 195 l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 55566666666666543 2 356677788888888888877788888889999999999999888888899999999999
Q ss_pred ccCCcCcccCCch-hhhcCCcceeecCCCCCCCCCC
Q 048080 138 LSYNHFEGKVPIE-AIFNSTKGISLVGNENLCGGSR 172 (223)
Q Consensus 138 l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~~~~ 172 (223)
+++|++++..+.. .....++.+++.+||+.|+|..
T Consensus 273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999998654432 4467788999999999999954
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=4e-23 Score=185.50 Aligned_cols=164 Identities=32% Similarity=0.589 Sum_probs=126.3
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcc---
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTT--- 78 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--- 78 (223)
+|.+++++++|++|++++|++.+.+|..+. ..+.|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 566777777777777777777766666543 3555677788888777777777777888888888887777655543
Q ss_pred -------------------------------------------------------------------ccCCCCCcEEEcc
Q 048080 79 -------------------------------------------------------------------LGGCTSLEHLSMQ 91 (223)
Q Consensus 79 -------------------------------------------------------------------~~~l~~L~~L~L~ 91 (223)
+..+++|+.||++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 2334667888888
Q ss_pred cCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeecCCCC
Q 048080 92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLVGNEN 166 (223)
Q Consensus 92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~ 166 (223)
+|+++|.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.||+++|+++|.+|.. .....++.+++++|+.
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 88888888888888888888888888888888888888888888999888888888754 5566788888888864
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.2e-22 Score=161.16 Aligned_cols=146 Identities=21% Similarity=0.263 Sum_probs=135.6
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT 83 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 83 (223)
+++.++++|++|++++|.+. .++...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..++
T Consensus 79 ~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 157 (272)
T 3rfs_A 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157 (272)
T ss_dssp GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc
Confidence 46889999999999999998 78877778888899999999999988888899999999999999999988888899999
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch
Q 048080 84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~ 150 (223)
+|+.|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.|.+|..
T Consensus 158 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHH
Confidence 9999999999999888888899999999999999999988888999999999999999999988843
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=7.8e-23 Score=178.74 Aligned_cols=169 Identities=24% Similarity=0.277 Sum_probs=140.2
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccccc---CCccc
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE---IPTTL 79 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~ 79 (223)
|.+|.++++|++|++++|++.+..|...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++. .+..+
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence 567777788888888888877555555566677778888888888877788888888888888888888762 33568
Q ss_pred cCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcc
Q 048080 80 GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKG 158 (223)
Q Consensus 80 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~ 158 (223)
..+++|+.|++++|++++..|..|..+++|++|++++|++++..|..+..++.| .|++++|++++..|.. .....++.
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence 888999999999999998888889999999999999999999899999999999 9999999999766643 56788999
Q ss_pred eeecCCCCCCCCCC
Q 048080 159 ISLVGNENLCGGSR 172 (223)
Q Consensus 159 l~~~~n~~~C~~~~ 172 (223)
+++.+||+.|+|..
T Consensus 552 L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 552 INLRQNPLDCTCSN 565 (606)
T ss_dssp EECTTCCEECSGGG
T ss_pred EeCCCCCccccCCc
Confidence 99999999999854
No 27
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.5e-22 Score=153.10 Aligned_cols=145 Identities=20% Similarity=0.252 Sum_probs=120.0
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
+|..+. ++|++|++++|++. .++...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..
T Consensus 22 ~p~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 22 VPTGIP--AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp CCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCC--CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 555443 57888999999888 777777777788889999999888777777888889999999999888777777888
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 149 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 149 (223)
+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.+.++.
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence 88999999999988877777788888899999999988877777788888899999999988887763
No 28
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.9e-22 Score=158.71 Aligned_cols=147 Identities=22% Similarity=0.240 Sum_probs=135.4
Q ss_pred CCC-CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 2 RPP-SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 2 ip~-~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
+|+ .|.++++|++|++++|.+. .+|...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred eChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 444 4688999999999999998 88888888888999999999999988888999999999999999999988777899
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 149 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 149 (223)
.+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++.|.++.
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 999999999999999988888899999999999999999987777899999999999999999998873
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1e-22 Score=172.19 Aligned_cols=166 Identities=18% Similarity=0.153 Sum_probs=145.8
Q ss_pred CCCCCCCeeecccCccccCCChhhhhc--------------------------------------cCCceEEEccCCccc
Q 048080 7 GNCQNLILLTTCKNKLSGTVPRQLLRI--------------------------------------ITRSVLLDLFDNLLS 48 (223)
Q Consensus 7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~--------------------------------------~~~l~~L~L~~n~l~ 48 (223)
..+++|++|++++|++.+.+|..++.. .+.|++|++++|.+.
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence 355789999999999876666554432 146799999999999
Q ss_pred ccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhh
Q 048080 49 GHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE 128 (223)
Q Consensus 49 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 128 (223)
+..|..|..+++|++|++++|.+++..|..|.++++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..|.
T Consensus 289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 368 (455)
T 3v47_A 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence 99999999999999999999999999899999999999999999999988899999999999999999999988899999
Q ss_pred CCCCCCEEeccCCcCcccCCch-hhhcCCcceeecCCCCCCCCCC
Q 048080 129 NLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLVGNENLCGGSR 172 (223)
Q Consensus 129 ~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~~~~ 172 (223)
.+++|+.|++++|++++..+.. .....++.+++++|++.|+|+.
T Consensus 369 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999999999999999754432 4567889999999999999865
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=1.6e-22 Score=176.84 Aligned_cols=171 Identities=19% Similarity=0.211 Sum_probs=147.9
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccc-cccCCcccc
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMF-SGEIPTTLG 80 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~ 80 (223)
++..+..+++|+.+++..+......+...+.....++.+++++|.+.+..+..+..+++|+.|++++|.+ .+..|+.|.
T Consensus 412 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~ 491 (635)
T 4g8a_A 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 491 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence 3567788889999999888887666667778888889999999999988889999999999999999974 456788899
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-h-hhcCCcc
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-A-IFNSTKG 158 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~-~~~~l~~ 158 (223)
.+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|++++..|.. . ....++.
T Consensus 492 ~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence 9999999999999999988999999999999999999999888889999999999999999999876643 2 2357888
Q ss_pred eeecCCCCCCCCCC
Q 048080 159 ISLVGNENLCGGSR 172 (223)
Q Consensus 159 l~~~~n~~~C~~~~ 172 (223)
+++++|||.|+|..
T Consensus 572 L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 572 LNLTQNDFACTCEH 585 (635)
T ss_dssp EECTTCCBCCSGGG
T ss_pred EEeeCCCCcccCCc
Confidence 99999999999953
No 31
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.89 E-value=4.7e-23 Score=155.62 Aligned_cols=156 Identities=24% Similarity=0.253 Sum_probs=133.2
Q ss_pred CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080 12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ 91 (223)
Q Consensus 12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (223)
-+.+++++|++. ++|..++ +.+++|++++|.++ .+|..|..+++|++|++++|.++++.+..|.++++|+.|+|+
T Consensus 12 ~~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 367999999998 9997654 56799999999999 677899999999999999999999988999999999999999
Q ss_pred cCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCCCCCC
Q 048080 92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGGS 171 (223)
Q Consensus 92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~~~ 171 (223)
+|++++..+.+|..+++|++|+|++|.+++..+..|..+++|+.+++++|++.|.+...+....+.......+...|..+
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P 166 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGP 166 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEES
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCc
Confidence 99999988889999999999999999999877778999999999999999999998876554444332223334456554
Q ss_pred C
Q 048080 172 R 172 (223)
Q Consensus 172 ~ 172 (223)
.
T Consensus 167 ~ 167 (193)
T 2wfh_A 167 G 167 (193)
T ss_dssp G
T ss_pred h
Confidence 3
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=2.1e-22 Score=163.94 Aligned_cols=161 Identities=19% Similarity=0.265 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCC---------CCCCCeEeccCcccc
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGN---------LKHLVSLDISSNMFS 72 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~ 72 (223)
||++|+++++|++|++++|.+. .+|..+ ..++.|++|++++|.+.+..|..+.. +++|++|++++|.++
T Consensus 119 lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 119 LPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp CCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred hhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence 4555555555555555555555 555443 23344455555555555555544432 556666666666665
Q ss_pred ccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-h
Q 048080 73 GEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-A 151 (223)
Q Consensus 73 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~ 151 (223)
.+|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.. .
T Consensus 197 -~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 197 -SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp -CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred -cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 455556666667777777776663 4445666677777777777776677766777777777777777666666633 4
Q ss_pred hhcCCcceeecCCCC
Q 048080 152 IFNSTKGISLVGNEN 166 (223)
Q Consensus 152 ~~~~l~~l~~~~n~~ 166 (223)
....++.+++++|+.
T Consensus 275 ~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVN 289 (328)
T ss_dssp GCTTCCEEECTTCTT
T ss_pred cCCCCCEEeCCCCCc
Confidence 455666677777654
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=6.9e-23 Score=185.64 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=40.7
Q ss_pred ccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCc----------------------ccCCchhhhcCCccee
Q 048080 103 LSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE----------------------GKVPIEAIFNSTKGIS 160 (223)
Q Consensus 103 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~----------------------~~~~~~~~~~~l~~l~ 160 (223)
|.++++|+.|+|++|.+++..|..|..+++|+.|++++|.++ +..|. .+..+..++
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~ 553 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPD--VFVSLSVLD 553 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSC--CCSSCCEEE
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChh--HhCCcCEEE
Confidence 444455555555555555555555555555555555555554 33332 245677899
Q ss_pred ecCCCCCCCC
Q 048080 161 LVGNENLCGG 170 (223)
Q Consensus 161 ~~~n~~~C~~ 170 (223)
+.+||+.|+|
T Consensus 554 l~~Np~~C~c 563 (844)
T 3j0a_A 554 ITHNKFICEC 563 (844)
T ss_dssp EEEECCCCSS
T ss_pred ecCCCccccc
Confidence 9999999988
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.3e-22 Score=163.70 Aligned_cols=162 Identities=19% Similarity=0.173 Sum_probs=143.1
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhh--------hccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLL--------RIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS 72 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~--------~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 72 (223)
.||+.|+++++|++|++++|.+.+.+|..+. ...+.|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 141 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 4799999999999999999888889998763 34778899999999999 78888999999999999999999
Q ss_pred ccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-h
Q 048080 73 GEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-A 151 (223)
Q Consensus 73 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~ 151 (223)
+ .|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.. .
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 5 5667999999999999999999999999999999999999999999999999999999999999999999988854 4
Q ss_pred hhcCCcceeecCC
Q 048080 152 IFNSTKGISLVGN 164 (223)
Q Consensus 152 ~~~~l~~l~~~~n 164 (223)
....+..+.+..+
T Consensus 299 ~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 QLPANCIILVPPH 311 (328)
T ss_dssp GSCTTCEEECCGG
T ss_pred hccCceEEeCCHH
Confidence 4455555555444
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.3e-21 Score=173.30 Aligned_cols=172 Identities=20% Similarity=0.182 Sum_probs=128.2
Q ss_pred CCCCCCCCeeecccCccc--cCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCc------
Q 048080 6 LGNCQNLILLTTCKNKLS--GTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT------ 77 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~--~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------ 77 (223)
|..+++|+.|++++|.+. +.+|. .+...+.|++|++++|.+++..+..|.++++|++|++++|.+++..+.
T Consensus 450 ~~~~~~L~~L~l~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 528 (680)
T 1ziw_A 450 FALVPSLQRLMLRRVALKNVDSSPS-PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528 (680)
T ss_dssp TTTCTTCCEEECTTSCCBCTTCSSC-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred hhcCcccccchhccccccccccCCc-ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc
Confidence 333444444444444432 12333 234556678888888888877777788888888888888888765322
Q ss_pred --cccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-h-hh
Q 048080 78 --TLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-A-IF 153 (223)
Q Consensus 78 --~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~-~~ 153 (223)
.|.++++|+.|++++|+++...+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..+.. . .+
T Consensus 529 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 608 (680)
T 1ziw_A 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608 (680)
T ss_dssp CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH
T ss_pred chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccc
Confidence 3678888999999999888665567899999999999999999877778889999999999999999765543 2 57
Q ss_pred cCCcceeecCCCCCCCCCC-CCCcce
Q 048080 154 NSTKGISLVGNENLCGGSR-KSKFSI 178 (223)
Q Consensus 154 ~~l~~l~~~~n~~~C~~~~-~~~~~~ 178 (223)
..++.+++.+|||.|+|.. .+...|
T Consensus 609 ~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 609 RNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp TTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred cccCEEEccCCCcccCCccHHHHHHH
Confidence 8899999999999999975 443333
No 36
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.4e-21 Score=147.67 Aligned_cols=156 Identities=21% Similarity=0.173 Sum_probs=138.1
Q ss_pred CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080 12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ 91 (223)
Q Consensus 12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (223)
-+.++.+++.+. .+|..+ .+.+++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 467889999998 888654 4567999999999998888889999999999999999998877789999999999999
Q ss_pred cCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeecCCCCCCCC
Q 048080 92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLVGNENLCGG 170 (223)
Q Consensus 92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~~n~~~C~~ 170 (223)
+|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+. ......++.+++.+|++.|++
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 9999987777889999999999999999988888899999999999999999965553 245678899999999999987
Q ss_pred C
Q 048080 171 S 171 (223)
Q Consensus 171 ~ 171 (223)
+
T Consensus 165 ~ 165 (208)
T 2o6s_A 165 P 165 (208)
T ss_dssp T
T ss_pred C
Confidence 5
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=6.2e-22 Score=159.33 Aligned_cols=169 Identities=21% Similarity=0.283 Sum_probs=145.3
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccc-cCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG-HFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC 82 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 82 (223)
..+.++++|++|++++|.+. .++...+...+.|++|++++|.+.+ ..|..|..+++|++|++++|.+++..|..|..+
T Consensus 120 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 198 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence 47899999999999999998 5555566777888999999999986 678899999999999999999999889999999
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCC-CCCEEeccCCcCcccCCchhh---hcCCcc
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLSFLNLSYNHFEGKVPIEAI---FNSTKG 158 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~l~l~~N~l~~~~~~~~~---~~~l~~ 158 (223)
++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..++ +|+.|++++|++.|.++..++ ....+.
T Consensus 199 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~ 278 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 278 (306)
T ss_dssp TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGG
T ss_pred CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhh
Confidence 9999999999999988787899999999999999999999999999985 899999999999998875433 333444
Q ss_pred eeecCCCCCCCCCCC
Q 048080 159 ISLVGNENLCGGSRK 173 (223)
Q Consensus 159 l~~~~n~~~C~~~~~ 173 (223)
+....+...|..+..
T Consensus 279 ~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 279 LLVEVERMECATPSD 293 (306)
T ss_dssp GBSCGGGCBEEESGG
T ss_pred hhccccccccCCchh
Confidence 555566677765443
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=8.4e-22 Score=172.35 Aligned_cols=146 Identities=21% Similarity=0.247 Sum_probs=132.4
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
+||+.+. +++++|++++|+|+ .+|+..|..++.|++|+|++|.|+++.+++|.++++|++|+|++|.+++..++.|.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 4776664 57999999999999 89988888899999999999999988899999999999999999999988888999
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccc-cchhhhCCCCCCEEeccCCcCcccCCc
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH-IPQYLENLSFLSFLNLSYNHFEGKVPI 149 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~~~ 149 (223)
++++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|+.|++++|++++..+.
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 999999999999999988888899999999999999999864 578889999999999999999876553
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=8.1e-22 Score=167.83 Aligned_cols=168 Identities=20% Similarity=0.179 Sum_probs=131.6
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccC--------------
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISS-------------- 68 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-------------- 68 (223)
|.+|.++++|+.|++++|.+. .+|...+...+.|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus 145 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 145 HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp TTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred hhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence 456777788888888888877 67777677777778888888888777666666666555555444
Q ss_pred ----------ccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEec
Q 048080 69 ----------NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNL 138 (223)
Q Consensus 69 ----------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l 138 (223)
|.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 4555433346778889999999999999888888899999999999999999888889999999999999
Q ss_pred cCCcCcccCCch-hhhcCCcceeecCCCCCCCCC
Q 048080 139 SYNHFEGKVPIE-AIFNSTKGISLVGNENLCGGS 171 (223)
Q Consensus 139 ~~N~l~~~~~~~-~~~~~l~~l~~~~n~~~C~~~ 171 (223)
++|.+++..+.. .....++.+++.+|++.|+|.
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 999998644432 345678889999999999984
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=3e-21 Score=153.21 Aligned_cols=145 Identities=21% Similarity=0.250 Sum_probs=130.8
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
+||+.+. ++|++|++++|.+. .++...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCCC--CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 3677665 57999999999998 77776677788889999999999988888999999999999999999988889999
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccc-cchhhhCCCCCCEEeccCCcCcccCC
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGH-IPQYLENLSFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~~ 148 (223)
++++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 999999999999999988777899999999999999999974 58999999999999999999986543
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=9.7e-22 Score=161.35 Aligned_cols=167 Identities=22% Similarity=0.245 Sum_probs=124.8
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCC-cCCCCCCCCCeEeccCc-cccccCCcccc
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP-AEVGNLKHLVSLDISSN-MFSGEIPTTLG 80 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 80 (223)
|.+|+++++|++|++++|++. .+|...+...+.|++|++++|.+....+ ..|..+++|++|++++| .+....+..|.
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred HhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 466888888888888888887 7887777777788888888888885544 47888888888888888 46666677788
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCcc------------------------ccc--------------
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNL------------------------SGH-------------- 122 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l------------------------~~~-------------- 122 (223)
.+++|+.|++++|.+++..|..+..+++|++|++++|.+ ++.
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l 251 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence 888888888888888877777777766665555555544 321
Q ss_pred -----------------cchhhhCCCCCCEEeccCCcCcccCCch--hhhcCCcceeecCCCCCCCCC
Q 048080 123 -----------------IPQYLENLSFLSFLNLSYNHFEGKVPIE--AIFNSTKGISLVGNENLCGGS 171 (223)
Q Consensus 123 -----------------~p~~~~~l~~L~~l~l~~N~l~~~~~~~--~~~~~l~~l~~~~n~~~C~~~ 171 (223)
+|..+..+++|+.|++++|+++. +|.. .....++.+++.+|++.|+|+
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 23345667788888888888874 4432 446678888999999888874
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=6.7e-22 Score=171.42 Aligned_cols=169 Identities=26% Similarity=0.250 Sum_probs=140.6
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCC-cCCCCCCCCCeEeccCccccccCCccccC
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP-AEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
|..+.++++|++|++++|.+. .+|.. +...+.|++|++++|.+.+..+ ..|..+++|++|++++|.+.+..|..|.+
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred cccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 345666777778888877777 55555 5556777888888888886655 56888999999999999999888888999
Q ss_pred CCCCcEEEcccCccc-ccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcce
Q 048080 82 CTSLEHLSMQDNSFT-GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGI 159 (223)
Q Consensus 82 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l 159 (223)
+++|+.|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+.. .....++.+
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 999999999999987 578888999999999999999999888999999999999999999998766542 456778899
Q ss_pred eecCCCCCCCCCCC
Q 048080 160 SLVGNENLCGGSRK 173 (223)
Q Consensus 160 ~~~~n~~~C~~~~~ 173 (223)
++.+|++.|+|+..
T Consensus 524 ~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 524 WLHTNPWDCSCPRI 537 (570)
T ss_dssp ECCSSCBCCCTTTT
T ss_pred EecCCcccCCCcch
Confidence 99999999998753
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=8.4e-21 Score=151.99 Aligned_cols=160 Identities=25% Similarity=0.207 Sum_probs=129.3
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
||..+. ++++.|++++|.+. .++...+...+.|++|++++|.+++..+. ..+++|++|++++|.++ ..|..+..
T Consensus 25 ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~ 98 (290)
T 1p9a_G 25 LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQT 98 (290)
T ss_dssp CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTT
T ss_pred CCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhcc
Confidence 565554 57888888888887 56555666677778888888888865443 67888888888888888 56777888
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCccee
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGIS 160 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~ 160 (223)
+++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|+++...+.. .....++.++
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 999999999999999887788999999999999999999888888889999999999999998544432 3467788899
Q ss_pred ecCCCCC
Q 048080 161 LVGNENL 167 (223)
Q Consensus 161 ~~~n~~~ 167 (223)
+++|...
T Consensus 179 L~~N~l~ 185 (290)
T 1p9a_G 179 LQENSLY 185 (290)
T ss_dssp CCSSCCC
T ss_pred CCCCcCC
Confidence 9988764
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=167.91 Aligned_cols=170 Identities=18% Similarity=0.237 Sum_probs=146.5
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccc-ccCCccccC
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS-GEIPTTLGG 81 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 81 (223)
|+.+.++++|+.|++++|.+.+..|...+...+.|++|++++|.+.+..+..|..+++|++|++++|.++ +..|..+..
T Consensus 389 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 4558899999999999999985556566777888999999999999999999999999999999999997 578899999
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhh-cCCc--c
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIF-NSTK--G 158 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~-~~l~--~ 158 (223)
+++|+.|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.+++++|+++|.+|..+.. .++. .
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~ 548 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 548 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTG
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhcc
Confidence 999999999999999988999999999999999999999988888999999999999999999999965443 2222 1
Q ss_pred eeecCCCCCCCCCCC
Q 048080 159 ISLVGNENLCGGSRK 173 (223)
Q Consensus 159 l~~~~n~~~C~~~~~ 173 (223)
..+.+.+ .|..+..
T Consensus 549 ~~~~~~~-~C~~~~~ 562 (570)
T 2z63_A 549 QKEQGSA-KCSGSGK 562 (570)
T ss_dssp GGEESCC-BBTTTCC
T ss_pred ccCCCch-hhCCCCC
Confidence 2344555 7876543
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=6e-21 Score=168.96 Aligned_cols=171 Identities=19% Similarity=0.266 Sum_probs=137.5
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCC--------cCCCCCCCCCeEeccCccccc
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFP--------AEVGNLKHLVSLDISSNMFSG 73 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~ 73 (223)
+|.+|.++++|++|++++|++. .+|...+...+.|++|++++|.+++..+ ..|.++++|++|++++|.++.
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 550 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC
T ss_pred CCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC
Confidence 5889999999999999999999 7888888888999999999999986533 237889999999999999997
Q ss_pred cCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhh-CCCCCCEEeccCCcCcccCCc-hh
Q 048080 74 EIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLE-NLSFLSFLNLSYNHFEGKVPI-EA 151 (223)
Q Consensus 74 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~l~l~~N~l~~~~~~-~~ 151 (223)
+.+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+. .+++|+.+++++|++.|.|+. .+
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~ 630 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSS
T ss_pred CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHH
Confidence 7667899999999999999999988888899999999999999999998888887 789999999999999999985 44
Q ss_pred hhcCCcce--eec--CCCCCCCCCCC
Q 048080 152 IFNSTKGI--SLV--GNENLCGGSRK 173 (223)
Q Consensus 152 ~~~~l~~l--~~~--~n~~~C~~~~~ 173 (223)
+...+... .+. .....|.++..
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~C~~p~~ 656 (680)
T 1ziw_A 631 FVNWINETHTNIPELSSHYLCNTPPH 656 (680)
T ss_dssp EECCSSCC------------------
T ss_pred HHHHHHhcCcccccccCCcEECCchH
Confidence 43333221 111 13346766543
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=7.2e-21 Score=161.97 Aligned_cols=141 Identities=23% Similarity=0.176 Sum_probs=64.8
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT 83 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 83 (223)
.+|.++++|++|++++|.+. .++...+..++.|++|++++|.++...+..|.++++|++|++++|.+.+..+..|..++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 34444444444444444444 23222333334444444444444433333444444444444444444444444444444
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080 84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 145 (223)
+|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 44444444444444444444444445555554444444444444444444455444444443
No 47
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.9e-21 Score=160.26 Aligned_cols=147 Identities=20% Similarity=0.130 Sum_probs=130.8
Q ss_pred CCCCC-CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 3 PPSLG-NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 3 p~~~~-~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
+..|. ++++|++|++++|++. .++...|..++.|++|+|++|.++...+..|..+++|++|+|++|.++++.+..|.+
T Consensus 56 ~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 134 (361)
T 2xot_A 56 AEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134 (361)
T ss_dssp TTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred hhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC
Confidence 34566 8999999999999998 788777888889999999999999888889999999999999999999998999999
Q ss_pred CCCCcEEEcccCcccccCCccc---cCCCCCCEEECCCCccccccchhhhCCCC--CCEEeccCCcCcccCCch
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTL---SSLKSITELDLSRNNLSGHIPQYLENLSF--LSFLNLSYNHFEGKVPIE 150 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~l~l~~N~l~~~~~~~ 150 (223)
+++|+.|+|++|++++..+..| ..+++|+.|+|++|.+++..+..+..++. ++.|++++|++.|.|...
T Consensus 135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~ 208 (361)
T 2xot_A 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLY 208 (361)
T ss_dssp CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHH
T ss_pred cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcH
Confidence 9999999999999997666666 56899999999999999877788888887 489999999999988643
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=1.6e-20 Score=158.96 Aligned_cols=160 Identities=20% Similarity=0.205 Sum_probs=81.2
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT 83 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 83 (223)
.+|+++++|++|++++|.+. .++...+..++.|++|+|++|.++...+..|..+++|++|++++|.++.+.+..|..++
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 171 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred HHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence 34444445555555555444 33333344444445555555554444444444455555555555554444444444455
Q ss_pred CCcEEEccc-CcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceee
Q 048080 84 SLEHLSMQD-NSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISL 161 (223)
Q Consensus 84 ~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~ 161 (223)
+|+.|++++ |.+....+..|..+++|++|++++|.+++. | .+..+++|+.|++++|.+.+..+.. .....++.+++
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEEC
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEe
Confidence 555555554 233333333455556666666666666533 3 3556666666666666666544422 33456666777
Q ss_pred cCCCC
Q 048080 162 VGNEN 166 (223)
Q Consensus 162 ~~n~~ 166 (223)
.+|..
T Consensus 250 ~~n~l 254 (452)
T 3zyi_A 250 MNSQV 254 (452)
T ss_dssp TTSCC
T ss_pred CCCcC
Confidence 66644
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=7.9e-21 Score=160.58 Aligned_cols=140 Identities=19% Similarity=0.201 Sum_probs=129.5
Q ss_pred CCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEE
Q 048080 10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLS 89 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 89 (223)
++|+.|++++|.+. .++...+...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 275 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 68999999999999 45545567778889999999999999999999999999999999999988899999999999999
Q ss_pred cccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch
Q 048080 90 MQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150 (223)
Q Consensus 90 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~ 150 (223)
+++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|+++|.+|..
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 9999999998999999999999999999999877778899999999999999999999853
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.5e-20 Score=164.36 Aligned_cols=163 Identities=19% Similarity=0.244 Sum_probs=137.5
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
+||..+. +++++|++++|.+. .++...+...+.|++|++++|.+++..|..|.++++|++|++++|.+++..|+.|.
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred cCCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 3677665 78999999999998 67776677788889999999999988889999999999999999999988899999
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCcccc-ccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCC--
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSG-HIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNST-- 156 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l-- 156 (223)
++++|++|++++|.+++..+..++.+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++..+.. .....+
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 99999999999999997777889999999999999999986 46889999999999999999998765532 223323
Q ss_pred --cceeecCCCC
Q 048080 157 --KGISLVGNEN 166 (223)
Q Consensus 157 --~~l~~~~n~~ 166 (223)
..+++.+|..
T Consensus 182 ~l~~L~l~~n~l 193 (606)
T 3vq2_A 182 VNLSLDMSLNPI 193 (606)
T ss_dssp CCCEEECTTCCC
T ss_pred ccceeeccCCCc
Confidence 3577777654
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=1.1e-20 Score=163.95 Aligned_cols=161 Identities=24% Similarity=0.241 Sum_probs=133.4
Q ss_pred CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccC--CcCCCCCCCCCeEeccCccccc-cCCccccCCC
Q 048080 7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHF--PAEVGNLKHLVSLDISSNMFSG-EIPTTLGGCT 83 (223)
Q Consensus 7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~ 83 (223)
..+++|++|++++|.+.+.+|.. +...+.|++|++++|.+++.. |..|..+++|++|++++|.+++ ..+..+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 67889999999999998656654 455677899999999998643 4678899999999999999998 4444688899
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeec
Q 048080 84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLV 162 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~ 162 (223)
+|+.|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+. ......++.++++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 999999999999877766554 68999999999999 6676677999999999999999953333 3556778899999
Q ss_pred CCCCCCCCC
Q 048080 163 GNENLCGGS 171 (223)
Q Consensus 163 ~n~~~C~~~ 171 (223)
+|++.|+|+
T Consensus 506 ~N~~~c~c~ 514 (562)
T 3a79_B 506 DNPWDCTCP 514 (562)
T ss_dssp SCCBCCCHH
T ss_pred CCCcCCCcc
Confidence 999999984
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=158.10 Aligned_cols=160 Identities=20% Similarity=0.254 Sum_probs=126.9
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
+||+.+. ++++.|++++|++. .++...+...+.|++|+|++|.+....+..|.++++|++|++++|.++.+.+..|.
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 4677666 68999999999998 77777778888999999999999988889999999999999999999988888899
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCC-CccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcce
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR-NNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGI 159 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l 159 (223)
.+++|+.|++++|.++...+..|..+++|++|++++ |.+....+..|..+++|+.|++++|.++ .+|.......++.+
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L 212 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDEL 212 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEE
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEE
Confidence 999999999999999977777788888888888887 4444444446777777777777777666 33333344445555
Q ss_pred eecCC
Q 048080 160 SLVGN 164 (223)
Q Consensus 160 ~~~~n 164 (223)
++++|
T Consensus 213 ~Ls~N 217 (440)
T 3zyj_A 213 DLSGN 217 (440)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 55554
No 53
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.85 E-value=1.4e-20 Score=139.85 Aligned_cols=135 Identities=20% Similarity=0.230 Sum_probs=122.3
Q ss_pred CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080 11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM 90 (223)
Q Consensus 11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 90 (223)
..+.+++++|++. .+|..++ +.++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 4578999999998 8886553 57799999999999888888999999999999999999888888999999999999
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc
Q 048080 91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI 149 (223)
Q Consensus 91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~ 149 (223)
++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.+++++|++.|.++.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 99999988888889999999999999999977777788999999999999999998874
No 54
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=3e-20 Score=154.36 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccc
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS 72 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 72 (223)
|+++++|++|++++|++. .+|..++...+.|++|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 113 ~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred hcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 444444444444444444 444444444444444444444444444444444444555555444443
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.6e-20 Score=152.80 Aligned_cols=160 Identities=19% Similarity=0.185 Sum_probs=86.9
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc--cCCcccc
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG--EIPTTLG 80 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~ 80 (223)
|.+|+++++|++|++++|.+. .+|..++ +.|++|++++|.+....+..|..+++|++|++++|.++. ..+..|.
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred HhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 445566666666666666665 5554433 344555555555554444556666666666666666532 3333333
Q ss_pred CC--------------------CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080 81 GC--------------------TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY 140 (223)
Q Consensus 81 ~l--------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~ 140 (223)
.+ ++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 171 ~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 171 GLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp SCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred CCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 22 2344444444444444445555666666666666666655555566666666666666
Q ss_pred CcCcccCCchhhhcCCcceeecCCCC
Q 048080 141 NHFEGKVPIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 141 N~l~~~~~~~~~~~~l~~l~~~~n~~ 166 (223)
|+++...+.......++.+++.+|..
T Consensus 251 N~l~~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 251 NKLSRVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp SCCCBCCTTGGGCTTCCEEECCSSCC
T ss_pred CcCeecChhhhcCccCCEEECCCCCC
Confidence 66663222233444555566665544
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.5e-20 Score=162.96 Aligned_cols=91 Identities=22% Similarity=0.219 Sum_probs=44.2
Q ss_pred CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080 5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS 84 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 84 (223)
+|+++++|++|++++|.+. .+|...+..++.|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172 (597)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred HhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence 4555555555555555554 344444444444455555555555443344445555555555555555444444444444
Q ss_pred CcEEEcccCccc
Q 048080 85 LEHLSMQDNSFT 96 (223)
Q Consensus 85 L~~L~L~~N~l~ 96 (223)
|+.|++++|.++
T Consensus 173 L~~L~L~~N~l~ 184 (597)
T 3oja_B 173 LQNLQLSSNRLT 184 (597)
T ss_dssp CCEEECTTSCCS
T ss_pred CcEEECcCCCCC
Confidence 444444444443
No 57
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=1.8e-20 Score=165.10 Aligned_cols=163 Identities=17% Similarity=0.226 Sum_probs=139.7
Q ss_pred CCCCCC-------CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCC-------CCCeEecc
Q 048080 2 RPPSLG-------NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLK-------HLVSLDIS 67 (223)
Q Consensus 2 ip~~~~-------~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~l~ 67 (223)
+|..|. .+++|++|++++|.+. .+|..++...+.|++|++++|.++...+..+..+. +|++|+++
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred chhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence 466666 7789999999999998 89999888888889999999999954444554433 99999999
Q ss_pred CccccccCCcccc--CCCCCcEEEcccCcccccCCccccCCCCCCEEEC------CCCccccccchhhhCCCCCCEEecc
Q 048080 68 SNMFSGEIPTTLG--GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDL------SRNNLSGHIPQYLENLSFLSFLNLS 139 (223)
Q Consensus 68 ~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~p~~~~~l~~L~~l~l~ 139 (223)
+|.++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|+.|+++
T Consensus 497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 99999 6777776 99999999999999997 7888999999999999 5688888999999999999999999
Q ss_pred CCcCcccCCchhhhcCCcceeecCCCCCCC
Q 048080 140 YNHFEGKVPIEAIFNSTKGISLVGNENLCG 169 (223)
Q Consensus 140 ~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~ 169 (223)
+|++ +.+|.. ....++.+++++|+..|-
T Consensus 575 ~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 575 SNDI-RKVNEK-ITPNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred CCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence 9999 566754 347899999999998774
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=1.3e-21 Score=158.11 Aligned_cols=162 Identities=21% Similarity=0.192 Sum_probs=85.4
Q ss_pred CCCCC--CCCCCCCeeecccCccccCCChhhhhc----cCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccccc-
Q 048080 2 RPPSL--GNCQNLILLTTCKNKLSGTVPRQLLRI----ITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE- 74 (223)
Q Consensus 2 ip~~~--~~l~~L~~L~l~~n~i~~~~p~~~~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 74 (223)
+|..+ +++++|++|++++|++. .+|..+... .+.|++|++++|.+.+..+..|..+++|++|++++|.+.+.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCS-SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred hHHHHHHhcCCCccEEEccCCCCc-chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence 34443 55666666666666665 334333222 14556666666666655555666666666666666655432
Q ss_pred -CCcc--ccCCCCCcEEEcccCcccc---cCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCcccC
Q 048080 75 -IPTT--LGGCTSLEHLSMQDNSFTG---SIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKV 147 (223)
Q Consensus 75 -~~~~--~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~ 147 (223)
.+.. +..+++|++|++++|++++ .....+..+++|++|++++|.+++..| ..+..+++|+.|++++|.++ .+
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~i 268 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SC
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hh
Confidence 1222 2555666666666666552 111223455566666666666665443 33444556666666666665 33
Q ss_pred CchhhhcCCcceeecCCCC
Q 048080 148 PIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 148 ~~~~~~~~l~~l~~~~n~~ 166 (223)
|.... ..++.+++++|..
T Consensus 269 p~~~~-~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 269 PKGLP-AKLSVLDLSYNRL 286 (312)
T ss_dssp CSSCC-SEEEEEECCSSCC
T ss_pred hhhcc-CCceEEECCCCCC
Confidence 33222 4555566666543
No 59
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=2.6e-21 Score=170.43 Aligned_cols=97 Identities=25% Similarity=0.422 Sum_probs=51.7
Q ss_pred CCcCCC--CCCCCCeEeccCccccccCCccccCCCCCcEEEcccCc-ccc-cCCccccCC------CCCCEEECCCCccc
Q 048080 51 FPAEVG--NLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNS-FTG-SIPSTLSSL------KSITELDLSRNNLS 120 (223)
Q Consensus 51 ~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~l------~~L~~L~L~~N~l~ 120 (223)
+|..+. .+++|++|++++|.+.+..|..|.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 555555 55555555555555555555555555555555555555 554 444444443 55555555555555
Q ss_pred cccch--hhhCCCCCCEEeccCCcCcccCC
Q 048080 121 GHIPQ--YLENLSFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 121 ~~~p~--~~~~l~~L~~l~l~~N~l~~~~~ 148 (223)
.+|. .+..+++|+.|++++|.+.|.+|
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 4444 45555555555555555554444
No 60
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.84 E-value=1.4e-20 Score=141.84 Aligned_cols=166 Identities=20% Similarity=0.257 Sum_probs=130.9
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCCh-hhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPR-QLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTL 79 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~-~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 79 (223)
+||..+.. +|++|++++|.+. .++. ..+..++.|++|++++|.+++..|..|..+++|++|++++|.+++..+..|
T Consensus 22 ~ip~~~~~--~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 98 (192)
T 1w8a_A 22 EIPRDIPL--HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF 98 (192)
T ss_dssp SCCSCCCT--TCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS
T ss_pred cCccCCCC--CCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh
Confidence 46776654 8999999999998 6664 467788889999999999999989999999999999999999999999999
Q ss_pred cCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchh-hhCCCCCCEEeccCCcCcccCCchhhhcCCcc
Q 048080 80 GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLSFLNLSYNHFEGKVPIEAIFNSTKG 158 (223)
Q Consensus 80 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~ 158 (223)
.++++|++|++++|++++..|..|..+++|++|++++|.+++..+-. +.. .++...+..+...|..|.. +....-
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~~--l~~~~l 174 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPSK--VRDVQI 174 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSSTT--TTTSBG
T ss_pred cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCChH--HcCCCh
Confidence 99999999999999999999999999999999999999999765522 111 1122234455566555532 334444
Q ss_pred eeecCCCCCCCCCCC
Q 048080 159 ISLVGNENLCGGSRK 173 (223)
Q Consensus 159 l~~~~n~~~C~~~~~ 173 (223)
.++..+...|..+..
T Consensus 175 ~~l~~~~~~C~~~~~ 189 (192)
T 1w8a_A 175 KDLPHSEFKCSSENS 189 (192)
T ss_dssp GGSCTTTCCCCCC--
T ss_pred hhCcHhhcCcCCCCC
Confidence 566677777876543
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=6.7e-21 Score=148.15 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=73.5
Q ss_pred CCCCCCCCCeeecccCc-cccCCChhhhhccCCceEEEccC-CcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080 5 SLGNCQNLILLTTCKNK-LSGTVPRQLLRIITRSVLLDLFD-NLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC 82 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 82 (223)
+|+++++|++|++++|+ +. .++...|...+.|++|++++ |.++...+..|.++++|++|++++|.+++ .|. |..+
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l 126 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKV 126 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTC
T ss_pred HccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccc
Confidence 44445555555555554 43 44444444444445555554 55554444444555555555555555543 232 4444
Q ss_pred CCCc---EEEcccC-cccccCCccccCCCCCC-EEECCCCccccccchhhhCCCCCCEEeccCCc-CcccCCch-hhh-c
Q 048080 83 TSLE---HLSMQDN-SFTGSIPSTLSSLKSIT-ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNH-FEGKVPIE-AIF-N 154 (223)
Q Consensus 83 ~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~-l~~~~~~~-~~~-~ 154 (223)
++|+ .|++++| .+++..+..|..+++|+ .|++++|.++...+..|.. ++|+.|++++|+ ++...+.. ... .
T Consensus 127 ~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 4444 5555555 55544444455555555 5555555555222222322 455555555553 44322211 122 3
Q ss_pred CCcceeecCCCC
Q 048080 155 STKGISLVGNEN 166 (223)
Q Consensus 155 ~l~~l~~~~n~~ 166 (223)
.++.+++++|..
T Consensus 206 ~L~~L~l~~N~l 217 (239)
T 2xwt_C 206 GPSLLDVSQTSV 217 (239)
T ss_dssp CCSEEECTTCCC
T ss_pred CCcEEECCCCcc
Confidence 455555555543
No 62
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=4.2e-20 Score=153.47 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=130.1
Q ss_pred CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080 8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH 87 (223)
Q Consensus 8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 87 (223)
.++++++|++++|.+. .+|..++...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4578999999999998 899988888888999999999999888889999999999999999999888888999999999
Q ss_pred EEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080 88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164 (223)
Q Consensus 88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n 164 (223)
|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++. + ...+..+..+++.+|
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D-LSLIPSLFHANVSYN 196 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C-GGGCTTCSEEECCSS
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c-cccccccceeecccc
Confidence 99999999966666678999999999999999988888899999999999999998853 2 223344444444443
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=7.7e-21 Score=155.97 Aligned_cols=142 Identities=19% Similarity=0.198 Sum_probs=87.5
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
||..+. ++|++|++++|.+. .+|...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..
T Consensus 46 iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 46 IPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp CCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred cccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 455444 36666777776666 555555555566666777666666666666666666666666666666544444666
Q ss_pred CCCCcEEEcccCcccccCC-ccccCCCCCCEEECCCC-ccccccchhhhCCCCCCEEeccCCcCccc
Q 048080 82 CTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRN-NLSGHIPQYLENLSFLSFLNLSYNHFEGK 146 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 146 (223)
+++|++|++++|++++..+ ..|..+++|++|++++| .+.+..+..+..+++|+.|++++|.+.+.
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 6666666666666664333 35666666666666666 35544455566666666666666666544
No 64
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=2.5e-20 Score=162.84 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=102.7
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
||..+. .++++|++++|.++ .+++..+...+.|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|.+
T Consensus 27 iP~~l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 27 IPGTLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp CCTTSC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CcCCCC--CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 555554 35677777777776 554445555666677777777777666677777777777777777777666667777
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCc--c
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTK--G 158 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~--~ 158 (223)
+++|++|++++|.+++..+..+..+++|++|++++|.+++.....+..+++|+.|++++|.+++..+.. .....++ .
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence 777777777777777655666677777777777777776544334444667777777777766543321 2334444 4
Q ss_pred eeecCCC
Q 048080 159 ISLVGNE 165 (223)
Q Consensus 159 l~~~~n~ 165 (223)
+++.+|.
T Consensus 184 L~l~~n~ 190 (606)
T 3t6q_A 184 LNLNGND 190 (606)
T ss_dssp EECTTCC
T ss_pred EecCCCc
Confidence 5555554
No 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=3.4e-20 Score=150.75 Aligned_cols=160 Identities=20% Similarity=0.212 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc--cCCcccc
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG--EIPTTLG 80 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~ 80 (223)
|.+|+++++|++|++++|.+. .+|..++ +.|++|++++|.+.+..+..|..+++|++|++++|.+.. ..+..|.
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 168 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG
T ss_pred HHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc
Confidence 455666666666666666555 4544332 233444444444443333334445555555555555432 3333344
Q ss_pred CCCC---------------------CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEecc
Q 048080 81 GCTS---------------------LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 139 (223)
Q Consensus 81 ~l~~---------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~ 139 (223)
.+++ |+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus 169 ~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 169 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp GCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred CCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 4333 4444444444444444555555666666666666665555555566666666666
Q ss_pred CCcCcccCCchhhhcCCcceeecCCCC
Q 048080 140 YNHFEGKVPIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 140 ~N~l~~~~~~~~~~~~l~~l~~~~n~~ 166 (223)
+|++............++.+++.+|..
T Consensus 249 ~N~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 249 NNKLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp SSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred CCcCccCChhhccCCCcCEEECCCCcC
Confidence 666552222223344455555555544
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=8.9e-21 Score=153.21 Aligned_cols=159 Identities=19% Similarity=0.112 Sum_probs=134.6
Q ss_pred CCCCCCeeecccCccccCCChhhh-hccCCceEEEccCCcccccCCcCCCCC-----CCCCeEeccCccccccCCccccC
Q 048080 8 NCQNLILLTTCKNKLSGTVPRQLL-RIITRSVLLDLFDNLLSGHFPAEVGNL-----KHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 8 ~l~~L~~L~l~~n~i~~~~p~~~~-~~~~~l~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
++++|++|++++|++.+.+|..++ ...+.|++|++++|.+++. |..+..+ ++|++|++++|.+++..+..|..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 789999999999999988898764 6788889999999999977 7777766 99999999999999988899999
Q ss_pred CCCCcEEEcccCccccc--CCccc--cCCCCCCEEECCCCcccc---ccchhhhCCCCCCEEeccCCcCcccCCc--hhh
Q 048080 82 CTSLEHLSMQDNSFTGS--IPSTL--SSLKSITELDLSRNNLSG---HIPQYLENLSFLSFLNLSYNHFEGKVPI--EAI 152 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~---~~p~~~~~l~~L~~l~l~~N~l~~~~~~--~~~ 152 (223)
+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++ .....+..+++|+.|++++|.+.+..|. ...
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 99999999999998765 23334 889999999999999983 2234556889999999999999986643 234
Q ss_pred hcCCcceeecCCCCC
Q 048080 153 FNSTKGISLVGNENL 167 (223)
Q Consensus 153 ~~~l~~l~~~~n~~~ 167 (223)
...++.+++++|...
T Consensus 252 l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK 266 (312)
T ss_dssp CTTCCEEECTTSCCS
T ss_pred cCCCCEEECCCCccC
Confidence 578899999998754
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.1e-20 Score=146.84 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=134.1
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCc-ccccCCcCCCCCCCCCeEeccC-ccccccCCcc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNL-LSGHFPAEVGNLKHLVSLDISS-NMFSGEIPTT 78 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~ 78 (223)
+||. +. ++|++|++++|+++ .+|...+...+.|++|++++|. ++...+..|.++++|++|++++ |.++++.+..
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCC-CC--CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 3666 44 48999999999998 8888778888889999999997 8878888899999999999998 9999888888
Q ss_pred ccCCCCCcEEEcccCcccccCCccccCCCCCC---EEECCCC-ccccccchhhhCCCCCC-EEeccCCcCcccCCch-hh
Q 048080 79 LGGCTSLEHLSMQDNSFTGSIPSTLSSLKSIT---ELDLSRN-NLSGHIPQYLENLSFLS-FLNLSYNHFEGKVPIE-AI 152 (223)
Q Consensus 79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~l~l~~N~l~~~~~~~-~~ 152 (223)
|.++++|+.|++++|.+++ +|+ |..+++|+ +|++++| .+++..+..|..+++|+ .+++++|.++ .+|.. ..
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~ 177 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN 177 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC
Confidence 9999999999999999995 666 88888888 9999999 99988778899999999 9999999998 44432 22
Q ss_pred hcCCcceeecCCC
Q 048080 153 FNSTKGISLVGNE 165 (223)
Q Consensus 153 ~~~l~~l~~~~n~ 165 (223)
...++.+++.+|+
T Consensus 178 ~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 178 GTKLDAVYLNKNK 190 (239)
T ss_dssp TCEEEEEECTTCT
T ss_pred CCCCCEEEcCCCC
Confidence 2567788888885
No 68
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=159.47 Aligned_cols=160 Identities=28% Similarity=0.258 Sum_probs=134.5
Q ss_pred CCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccc--cCCcCCCCCCCCCeEeccCccccccCCc-cccCCC
Q 048080 7 GNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG--HFPAEVGNLKHLVSLDISSNMFSGEIPT-TLGGCT 83 (223)
Q Consensus 7 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~ 83 (223)
..+++|++|++++|++.+.+|..+ ...+.|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|. .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 688999999999999986667654 556778999999999986 4456788999999999999999984554 588899
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc--hhhhcCCcceee
Q 048080 84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI--EAIFNSTKGISL 161 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~--~~~~~~l~~l~~ 161 (223)
+|+.|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++. +|. ......++.+++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEEC
Confidence 999999999999887776664 68999999999999 777777799999999999999995 443 345677889999
Q ss_pred cCCCCCCCCC
Q 048080 162 VGNENLCGGS 171 (223)
Q Consensus 162 ~~n~~~C~~~ 171 (223)
++|++.|+|.
T Consensus 476 ~~N~~~c~c~ 485 (520)
T 2z7x_B 476 HTNPWDCSCP 485 (520)
T ss_dssp CSSCBCCCHH
T ss_pred cCCCCcccCC
Confidence 9999999874
No 69
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=4e-20 Score=139.79 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=131.4
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL 85 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 85 (223)
.+.+++|+.|++++|.+. .+| . +...+.|++|++++|.+.. +..+..+++|++|++++|.+++..+..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 356789999999999998 888 3 4566788999999997763 3478899999999999999998888999999999
Q ss_pred cEEEcccCcccccCCccccCCCCCCEEECCCCc-cccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080 86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNN-LSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164 (223)
Q Consensus 86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n 164 (223)
++|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++++. +....+..++.+++.+|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-TTGGGCSSCCEEEECBC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-HHhccCCCCCEEEeeCc
Confidence 999999999998788889999999999999998 66 555 689999999999999999864 34566788999999998
Q ss_pred CC
Q 048080 165 EN 166 (223)
Q Consensus 165 ~~ 166 (223)
+.
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 74
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=7.7e-21 Score=162.49 Aligned_cols=130 Identities=21% Similarity=0.182 Sum_probs=74.8
Q ss_pred eEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc-CCCCCcEEEcccCcccccCCccccCCCCCCEEECCC
Q 048080 38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG-GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR 116 (223)
Q Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 116 (223)
+.|++++|.+++..|..|..+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++..+ +..+++|+.|+|++
T Consensus 123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSS 200 (487)
T ss_dssp EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCS
T ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCC
Confidence 3334444444444444555555556666666655555555543 45556666666665554422 23466677777777
Q ss_pred CccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCCCCC
Q 048080 117 NNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENLCGG 170 (223)
Q Consensus 117 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~C~~ 170 (223)
|.+++..| .+..+++|+.|++++|.+++..+.......+..+++++|++.|++
T Consensus 201 N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 201 NKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp SCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 77775444 366777777777777777753333334456667777777777653
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=9.9e-20 Score=159.22 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=129.8
Q ss_pred CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080 8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH 87 (223)
Q Consensus 8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 87 (223)
.+++++.+++++|.+. .+|..++...+.|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4578899999999997 899888888888899999999999888889999999999999999999888888999999999
Q ss_pred EEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080 88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164 (223)
Q Consensus 88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n 164 (223)
|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|.+++.. ...+..+..+++.+|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC
Confidence 999999999777777889999999999999999888888999999999999999988642 223344444444443
No 72
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.4e-19 Score=147.32 Aligned_cols=163 Identities=24% Similarity=0.280 Sum_probs=127.7
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccc--cCCcCCCCC--------------------C
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSG--HFPAEVGNL--------------------K 59 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~--~~~~~~~~l--------------------~ 59 (223)
+|..+. ++|++|++++|.+. .+|...+...+.|++|++++|.+.. ..+..|..+ +
T Consensus 117 l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~ 193 (332)
T 2ft3_A 117 IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE 193 (332)
T ss_dssp CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCS
T ss_pred cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccC
Confidence 455544 67777777777776 6666666666777777777777742 444444433 5
Q ss_pred CCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEecc
Q 048080 60 HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLS 139 (223)
Q Consensus 60 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~ 139 (223)
+|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 7888888888888887888999999999999999999888888999999999999999999 778889999999999999
Q ss_pred CCcCcccCCchh-------hhcCCcceeecCCCCCC
Q 048080 140 YNHFEGKVPIEA-------IFNSTKGISLVGNENLC 168 (223)
Q Consensus 140 ~N~l~~~~~~~~-------~~~~l~~l~~~~n~~~C 168 (223)
+|++++..+... ....+..+++.+|++.+
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CCCCCccChhHccccccccccccccceEeecCcccc
Confidence 999986443221 13456789999999864
No 73
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=8.1e-21 Score=171.66 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=100.0
Q ss_pred CCCCCCCCCCCCeeecccCcccc-----------------CCChhh-hhccCCceEEEccCCcccccCCcCCCCCCCCCe
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSG-----------------TVPRQL-LRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVS 63 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~-----------------~~p~~~-~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~ 63 (223)
||++|+++++|++|++++|.+.+ .+|+.+ |..++.|++|+|++|.+.+..|..|..+++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67777777777777777777775 266665 345566677777777777777777777777777
Q ss_pred EeccCcc-ccc-cCCccccCC-------CCCcEEEcccCcccccCCc--cccCCCCCCEEECCCCccccccchhhhCCCC
Q 048080 64 LDISSNM-FSG-EIPTTLGGC-------TSLEHLSMQDNSFTGSIPS--TLSSLKSITELDLSRNNLSGHIPQYLENLSF 132 (223)
Q Consensus 64 L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 132 (223)
|++++|. +++ .+|..+..+ ++|+.|++++|.++ .+|. .+..+++|+.|+|++|.++ .+| .|..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 7777776 665 455444333 36666666666666 5555 5666666666666666666 455 5556666
Q ss_pred CCEEeccCCcCcccCCc-hhhhcC-CcceeecCCC
Q 048080 133 LSFLNLSYNHFEGKVPI-EAIFNS-TKGISLVGNE 165 (223)
Q Consensus 133 L~~l~l~~N~l~~~~~~-~~~~~~-l~~l~~~~n~ 165 (223)
|+.|++++|.+. .+|. ...... ++.+++++|.
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 666666666655 3332 122333 5555555554
No 74
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=1.2e-19 Score=137.21 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=117.7
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
+| .+..+++|++|++++|.+. .++ .+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..
T Consensus 59 l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 59 LT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp CT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred hH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence 46 6889999999999999886 554 3556788899999999999888889999999999999999999888889999
Q ss_pred CCCCcEEEcccCc-ccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080 82 CTSLEHLSMQDNS-FTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 82 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 145 (223)
+++|+.|++++|. ++ .++ .+..+++|++|++++|.+++. + .+..+++|+.|++++|++.+
T Consensus 135 l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 9999999999998 66 555 589999999999999999964 3 68999999999999999864
No 75
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.8e-19 Score=146.47 Aligned_cols=162 Identities=18% Similarity=0.254 Sum_probs=134.3
Q ss_pred CCCCCCCCCCeeecccCcccc-CCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSG-TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC 82 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~-~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 82 (223)
..|.++++|++|++++|.+.. .+....+...+.|++|++++|.+.. .|..+. ++|++|++++|.+++..+..|..+
T Consensus 139 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTC
T ss_pred hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCC
Confidence 357889999999999999962 1444556777888999999999984 454443 799999999999998888999999
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchh-------hhcC
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEA-------IFNS 155 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~-------~~~~ 155 (223)
++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+... ....
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 99999999999999888888999999999999999999 778889999999999999999986443221 1345
Q ss_pred CcceeecCCCCCCC
Q 048080 156 TKGISLVGNENLCG 169 (223)
Q Consensus 156 l~~l~~~~n~~~C~ 169 (223)
+..+++.+||..+.
T Consensus 295 l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 295 YSGVSLFSNPVQYW 308 (330)
T ss_dssp CSEEECCSSSSCGG
T ss_pred ccceEeecCccccc
Confidence 67789999988653
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=3.8e-20 Score=159.89 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=108.6
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
+||+.+. ++|++|++++|.+. .++...+...+.|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|.
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred cccccCC--CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 3666654 67888888888887 55444556667778888888888877778888888888888888888877776788
Q ss_pred CCCCCcEEEcccCccccc-CCccccCCCCCCEEECCCCcccccc-chhhhCCCCCCEEeccCCcCcccCC
Q 048080 81 GCTSLEHLSMQDNSFTGS-IPSTLSSLKSITELDLSRNNLSGHI-PQYLENLSFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~~ 148 (223)
.+++|++|++++|.+++. .|..+..+++|++|++++|.+.+.+ +..+..+++|+.|++++|.+.+..|
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 888888888888888753 4566778888888888888743344 3567778888888888888776544
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=155.95 Aligned_cols=168 Identities=22% Similarity=0.263 Sum_probs=134.4
Q ss_pred CCCCCCCCCCCCeeecccCccccCCCh--hhhhccCCceEEEccCCcccccCC-cCCCCCCCCCeEeccCccccccCCcc
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPR--QLLRIITRSVLLDLFDNLLSGHFP-AEVGNLKHLVSLDISSNMFSGEIPTT 78 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~--~~~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 78 (223)
+|.+++++++|++|++++|++. .++. ..+...+.|++|++++|.+.+..| ..|..+++|++|++++|.+++..|..
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred hhhhhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence 6889999999999999999998 5443 345667888999999999998444 56889999999999999998877766
Q ss_pred ccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhh-hcCCc
Q 048080 79 LGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAI-FNSTK 157 (223)
Q Consensus 79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~-~~~l~ 157 (223)
+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.+++++|++.|.|+..+. ...+.
T Consensus 419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~ 495 (520)
T 2z7x_B 419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495 (520)
T ss_dssp CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHH
Confidence 54 79999999999999 7787777999999999999999954444589999999999999999999886544 22221
Q ss_pred ce-eecCCCCCCCCCCC
Q 048080 158 GI-SLVGNENLCGGSRK 173 (223)
Q Consensus 158 ~l-~~~~n~~~C~~~~~ 173 (223)
.. ........|..+..
T Consensus 496 ~~~~~~~~~~~C~~p~~ 512 (520)
T 2z7x_B 496 KNSQKEQGSAKCSGSGK 512 (520)
T ss_dssp HTTTTEESCCBBTTTCC
T ss_pred hccccCCCCCCcCCccc
Confidence 10 11234457876643
No 78
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=3.1e-20 Score=167.84 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=119.9
Q ss_pred CChhhhhccCCceEEEccCCcccc-----------------cCCcCCC--CCCCCCeEeccCccccccCCccccCCCCCc
Q 048080 26 VPRQLLRIITRSVLLDLFDNLLSG-----------------HFPAEVG--NLKHLVSLDISSNMFSGEIPTTLGGCTSLE 86 (223)
Q Consensus 26 ~p~~~~~~~~~l~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 86 (223)
+|..+ ..++.|++|+|++|.+++ .+|..+. .+++|++|++++|.+.+..|..|.++++|+
T Consensus 440 IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 66654 456777999999999998 3888877 999999999999999999999999999999
Q ss_pred EEEcccCc-ccc-cCCccccCCC-------CCCEEECCCCccccccch--hhhCCCCCCEEeccCCcCcccCCchhhhcC
Q 048080 87 HLSMQDNS-FTG-SIPSTLSSLK-------SITELDLSRNNLSGHIPQ--YLENLSFLSFLNLSYNHFEGKVPIEAIFNS 155 (223)
Q Consensus 87 ~L~L~~N~-l~~-~~~~~~~~l~-------~L~~L~L~~N~l~~~~p~--~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~ 155 (223)
.|++++|+ +++ .+|..+..++ +|++|++++|.++ .+|. .+..+++|+.|++++|.+. .+|.......
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCc
Confidence 99999998 988 7787665554 9999999999999 7887 8999999999999999999 7775566677
Q ss_pred CcceeecCCCCC
Q 048080 156 TKGISLVGNENL 167 (223)
Q Consensus 156 l~~l~~~~n~~~ 167 (223)
++.+++++|...
T Consensus 597 L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 597 LTDLKLDYNQIE 608 (876)
T ss_dssp ESEEECCSSCCS
T ss_pred ceEEECcCCccc
Confidence 888999888654
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=1.7e-19 Score=145.52 Aligned_cols=151 Identities=25% Similarity=0.315 Sum_probs=75.2
Q ss_pred CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080 5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS 84 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 84 (223)
++..+++|++|++++|.+. .++. +...+.|++|++++|.+.+. ..+..+++|++|++++|.+++.. .+..+++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~ 130 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSN 130 (308)
T ss_dssp TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTT
T ss_pred hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCC
Confidence 4555666666666666665 4444 34445556666666655532 23455555555555555554321 1444455
Q ss_pred CcEEEcccCcccccCC---------------------ccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcC
Q 048080 85 LEHLSMQDNSFTGSIP---------------------STLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 143 (223)
Q Consensus 85 L~~L~L~~N~l~~~~~---------------------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 143 (223)
|+.|++++|.+++..+ . +..+++|+.|++++|.+++..+ +..+++|+.|++++|++
T Consensus 131 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCC
T ss_pred CCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCcc
Confidence 5555555554443222 1 4444555555555555543322 44555555555555555
Q ss_pred cccCCchhhhcCCcceeecCCCC
Q 048080 144 EGKVPIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 144 ~~~~~~~~~~~~l~~l~~~~n~~ 166 (223)
.+..+ ......++.+++.+|+.
T Consensus 208 ~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 208 SDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CBCGG-GTTCTTCCEEEEEEEEE
T ss_pred Ccccc-ccCCCCCCEEEccCCee
Confidence 54332 23344455555555554
No 80
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.81 E-value=1.9e-19 Score=132.55 Aligned_cols=135 Identities=18% Similarity=0.180 Sum_probs=115.1
Q ss_pred CCCCCCeeecccCccc-cCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCc
Q 048080 8 NCQNLILLTTCKNKLS-GTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLE 86 (223)
Q Consensus 8 ~l~~L~~L~l~~n~i~-~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 86 (223)
..++|+.|++++|.+. +.+|.. +...+.|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3478999999999997 677765 45567789999999999865 7788999999999999999987888888899999
Q ss_pred EEEcccCcccccCC-ccccCCCCCCEEECCCCccccccc---hhhhCCCCCCEEeccCCcCcc
Q 048080 87 HLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHIP---QYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 87 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~l~l~~N~l~~ 145 (223)
.|++++|.+++... ..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999999986432 678899999999999999996655 478899999999999998874
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=2.1e-19 Score=155.97 Aligned_cols=147 Identities=20% Similarity=0.293 Sum_probs=126.2
Q ss_pred CCCCCCCCCCCCeeecccCccccCCCh--hhhhccCCceEEEccCCcccc-cCCcCCCCCCCCCeEeccCccccccCCcc
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPR--QLLRIITRSVLLDLFDNLLSG-HFPAEVGNLKHLVSLDISSNMFSGEIPTT 78 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~--~~~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 78 (223)
+|.+++++++|++|++++|++. .++. ..+...+.|++|++++|.+.+ ..+..|..+++|++|++++|.+++..|..
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred hhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 6889999999999999999998 6664 335667888999999999998 44456889999999999999998776665
Q ss_pred ccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhh
Q 048080 79 LGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAI 152 (223)
Q Consensus 79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~ 152 (223)
+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.+++++|++.|.|+..+.
T Consensus 448 l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 54 79999999999999 6666666999999999999999954444489999999999999999999986544
No 82
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=134.92 Aligned_cols=130 Identities=18% Similarity=0.249 Sum_probs=115.4
Q ss_pred eEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080 38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117 (223)
Q Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 117 (223)
+.+++++|.+. .+|..+. ++|++|++++|.++ .+|..|..+++|+.|++++|.+++..+.+|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67999999999 5555443 68999999999998 66789999999999999999999888889999999999999999
Q ss_pred ccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceeecCCCCCCCCC
Q 048080 118 NLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISLVGNENLCGGS 171 (223)
Q Consensus 118 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~~~n~~~C~~~ 171 (223)
.+++..|..|..+++|+.|++++|.++...+. ......++.+++.+|++.|+|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 99998888999999999999999999965543 3456788999999999999985
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=6.7e-20 Score=147.89 Aligned_cols=162 Identities=19% Similarity=0.158 Sum_probs=115.2
Q ss_pred CCCCC--CCCCCCCeeecccCccccCCCh---hhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc---
Q 048080 2 RPPSL--GNCQNLILLTTCKNKLSGTVPR---QLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG--- 73 (223)
Q Consensus 2 ip~~~--~~l~~L~~L~l~~n~i~~~~p~---~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 73 (223)
+|..+ +++++|++|++++|.+.+..+. ..+...+.|++|++++|.+.+..+..|..+++|++|++++|.+.+
T Consensus 107 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 186 (310)
T 4glp_A 107 MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG 186 (310)
T ss_dssp CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH
T ss_pred hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh
Confidence 46666 8888999999999998854441 222356778999999999988888888899999999999998754
Q ss_pred cC-CccccCCCCCcEEEcccCcccccCCc----cccCCCCCCEEECCCCccccccchhhhCC---CCCCEEeccCCcCcc
Q 048080 74 EI-PTTLGGCTSLEHLSMQDNSFTGSIPS----TLSSLKSITELDLSRNNLSGHIPQYLENL---SFLSFLNLSYNHFEG 145 (223)
Q Consensus 74 ~~-~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~l~l~~N~l~~ 145 (223)
.. +..+..+++|++|++++|+++. ++. .+..+++|++|+|++|.+++..|..+..+ ++|+.|++++|+++
T Consensus 187 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~- 264 (310)
T 4glp_A 187 LMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE- 264 (310)
T ss_dssp HHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-
T ss_pred hhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-
Confidence 22 2234667788888888887762 222 24566778888888888877766666665 57788888888777
Q ss_pred cCCchhhhcCCcceeecCCCC
Q 048080 146 KVPIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 146 ~~~~~~~~~~l~~l~~~~n~~ 166 (223)
.+|.. ....++.+++++|..
T Consensus 265 ~lp~~-~~~~L~~L~Ls~N~l 284 (310)
T 4glp_A 265 QVPKG-LPAKLRVLDLSSNRL 284 (310)
T ss_dssp SCCSC-CCSCCSCEECCSCCC
T ss_pred chhhh-hcCCCCEEECCCCcC
Confidence 44432 235677777777754
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=6.8e-19 Score=141.98 Aligned_cols=149 Identities=19% Similarity=0.332 Sum_probs=119.8
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL 85 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 85 (223)
++++++|+.|++++|.+. .+|. +...+.|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 345789999999999998 7773 4567788999999999996555 89999999999999999865 468999999
Q ss_pred cEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCC
Q 048080 86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNE 165 (223)
Q Consensus 86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~ 165 (223)
+.|++++|.+++. +. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ ......++.+++++|.
T Consensus 110 ~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 110 KTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp CEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 9999999999964 43 8889999999999999986544 7788888888888888775333 3344556666666654
Q ss_pred C
Q 048080 166 N 166 (223)
Q Consensus 166 ~ 166 (223)
.
T Consensus 185 l 185 (308)
T 1h6u_A 185 I 185 (308)
T ss_dssp C
T ss_pred c
Confidence 3
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.7e-19 Score=141.83 Aligned_cols=151 Identities=28% Similarity=0.282 Sum_probs=122.6
Q ss_pred CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080 5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS 84 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 84 (223)
.+..+++|++|++++|++. .++. +...+.|++|++++|.+++. + .+..+++|++|++++|.+++. ..+..+++
T Consensus 63 ~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~ 135 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ 135 (291)
T ss_dssp TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTT
T ss_pred hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEEECCCCcCCCC--hhhcCCCC
Confidence 4778889999999999988 6665 56677789999999988853 3 378889999999999998864 56888899
Q ss_pred CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080 85 LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164 (223)
Q Consensus 85 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n 164 (223)
|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. +.......++.+++.+|
T Consensus 136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEE
T ss_pred CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCC
Confidence 99999999999865 568888999999999999986655 88899999999999998853 44555677888888888
Q ss_pred CCC
Q 048080 165 ENL 167 (223)
Q Consensus 165 ~~~ 167 (223)
+..
T Consensus 211 ~i~ 213 (291)
T 1h6t_A 211 ECL 213 (291)
T ss_dssp EEE
T ss_pred ccc
Confidence 653
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=2.2e-19 Score=141.82 Aligned_cols=152 Identities=20% Similarity=0.230 Sum_probs=121.7
Q ss_pred CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080 5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS 84 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 84 (223)
.+..+++|++|++++|.+. .+| . +...+.|++|++++|.+++..+ +..+++|++|++++|.+++..+ +.. ++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~ 107 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-AC 107 (263)
T ss_dssp CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SS
T ss_pred chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-Cc
Confidence 4667889999999999998 777 2 4556778999999999986555 8889999999999999986433 233 88
Q ss_pred CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080 85 LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164 (223)
Q Consensus 85 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n 164 (223)
|+.|++++|.+++. + .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++. +.......++.+++.+|
T Consensus 108 L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 108 LSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred ccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence 99999999999854 3 488889999999999999865 3 688899999999999999876 44455677888888888
Q ss_pred CCCCC
Q 048080 165 ENLCG 169 (223)
Q Consensus 165 ~~~C~ 169 (223)
+..|.
T Consensus 183 ~~~~~ 187 (263)
T 1xeu_A 183 KCVNE 187 (263)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 76554
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=162.54 Aligned_cols=138 Identities=21% Similarity=0.180 Sum_probs=78.0
Q ss_pred CCCCeeecccCccccCCChhhhhccCCceEEEccCCccccc-CCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEE
Q 048080 10 QNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGH-FPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHL 88 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 88 (223)
++|++|++++|.++ .++...+..++.|++|++++|...+. .|..|.++++|++|++++|.+++..|+.|.++++|++|
T Consensus 24 ~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 55666666666665 33333344455556666666633322 25556666666666666666665556666666666666
Q ss_pred EcccCcccccCCcc--ccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCcccCC
Q 048080 89 SMQDNSFTGSIPST--LSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 89 ~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~~ 148 (223)
+|++|.+++..|.. |..+++|++|+|++|.+++..+ ..|..+++|+.|++++|.+.+..+
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 66666665544333 5566666666666666655433 345566666666666666554443
No 88
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=1.1e-18 Score=142.51 Aligned_cols=148 Identities=24% Similarity=0.299 Sum_probs=94.9
Q ss_pred CCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcE
Q 048080 8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEH 87 (223)
Q Consensus 8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 87 (223)
.+++|+.|++++|.+. .++. +...+.|++|++++|.+++..+ +..+++|++|++++|.+++. +.+..+++|+.
T Consensus 197 ~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 269 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKM 269 (347)
T ss_dssp GCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred CCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCE
Confidence 3344444444444443 2222 3445556667777776664333 66677777777777776653 45667777777
Q ss_pred EEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCC
Q 048080 88 LSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNE 165 (223)
Q Consensus 88 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~ 165 (223)
|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..| ...+..++.+++.+|+
T Consensus 270 L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 270 LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred EEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 77777777743 346677777777777777777777777777777777777777776555 4456667777777765
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=145.20 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=129.0
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCccccc---C-CcCCCCCCCCCeEeccCccccccCCc---c
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGH---F-PAEVGNLKHLVSLDISSNMFSGEIPT---T 78 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~ 78 (223)
+..+++|++|++++|++. .++...+...+.|++|++++|.+.+. . +..+..+++|++|++++|.++...+. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 456899999999999998 77766777788899999999997642 2 23457899999999999999743221 3
Q ss_pred ccCCCCCcEEEcccCcccccCCccccCC---CCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcC
Q 048080 79 LGGCTSLEHLSMQDNSFTGSIPSTLSSL---KSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNS 155 (223)
Q Consensus 79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~ 155 (223)
+..+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |....+..
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~ 295 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPE 295 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCC
Confidence 5788999999999999998878777776 69999999999999 6676654 7999999999999964 43456788
Q ss_pred CcceeecCCCCC
Q 048080 156 TKGISLVGNENL 167 (223)
Q Consensus 156 l~~l~~~~n~~~ 167 (223)
++.+++++|+..
T Consensus 296 L~~L~L~~N~l~ 307 (310)
T 4glp_A 296 VDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECSSTTTS
T ss_pred ccEEECcCCCCC
Confidence 899999999864
No 90
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=1.2e-19 Score=146.80 Aligned_cols=161 Identities=19% Similarity=0.126 Sum_probs=114.3
Q ss_pred CCCCCCCCeeecccCccccCCChh----------------hhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCc
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQ----------------LLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN 69 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~----------------~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 69 (223)
|..+++|++|++++|.+. .++.. .....+.|++|++++|.+++..+..|..+++|++|++++|
T Consensus 76 ~~~l~~L~~L~Ls~n~l~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp ETTCTTCCEEECCSSEEE-EEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred hhhcCCCCEEECcCCccc-cccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence 566677777777777665 33311 0112345677777777777766777777888888888888
Q ss_pred cccccCCccc-cCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCC
Q 048080 70 MFSGEIPTTL-GGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 70 ~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 148 (223)
.+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++.. ..+..+++|+.|++++|+++...+
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEECT
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccchhh
Confidence 8887766665 3678888888888888855 22 334788888888888888554 448888888999999888885433
Q ss_pred chhhhcCCcceeecCCCCCCCC
Q 048080 149 IEAIFNSTKGISLVGNENLCGG 170 (223)
Q Consensus 149 ~~~~~~~l~~l~~~~n~~~C~~ 170 (223)
.......++.+++++|++.|++
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHH
T ss_pred HhhcCCCCCEEEccCCCccCcC
Confidence 3345567888888888887753
No 91
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=9.7e-20 Score=157.34 Aligned_cols=162 Identities=21% Similarity=0.242 Sum_probs=133.6
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccccc-CCccccC
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE-IPTTLGG 81 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~ 81 (223)
|.+|+++++|++|++++|++. .++...+..++.|++|++++|.+++..+..|..+++|++|++++|.+++. .|..|..
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred hhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence 678999999999999999998 66666677788889999999999987777799999999999999999864 4678999
Q ss_pred CCCCcEEEcccCc-ccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch--hhhcCCcc
Q 048080 82 CTSLEHLSMQDNS-FTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE--AIFNSTKG 158 (223)
Q Consensus 82 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~--~~~~~l~~ 158 (223)
+++|++|++++|. +....+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.. .+.. .....++.
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRY 200 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSE
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccE
Confidence 9999999999998 454444689999999999999999999889888888888888888887653 2221 22566777
Q ss_pred eeecCCCC
Q 048080 159 ISLVGNEN 166 (223)
Q Consensus 159 l~~~~n~~ 166 (223)
+++++|..
T Consensus 201 L~L~~n~l 208 (549)
T 2z81_A 201 LELRDTNL 208 (549)
T ss_dssp EEEESCBC
T ss_pred EEccCCcc
Confidence 77777654
No 92
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.79 E-value=1.4e-19 Score=134.45 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=117.3
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT 83 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 83 (223)
+.+.++++|+.|++++|++. .+|. +....+.|++|++++|.+++. ..|..+++|++|++++|.+++..+..|..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 35677899999999999998 7764 556666889999999999976 6789999999999999999977666679999
Q ss_pred CCcEEEcccCcccccCCc--cccCCCCCCEEECCCCccccccch----hhhCCCCCCEEeccCCcCcc
Q 048080 84 SLEHLSMQDNSFTGSIPS--TLSSLKSITELDLSRNNLSGHIPQ----YLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~l~l~~N~l~~ 145 (223)
+|+.|++++|.++ .+|. .+..+++|+.|++++|.++ ..|. .+..+++|+.+|+++|....
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999999997 4555 7889999999999999998 4455 48899999999999998764
No 93
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.79 E-value=3e-19 Score=128.91 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=70.4
Q ss_pred CCCCeeecccCccc-cCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEE
Q 048080 10 QNLILLTTCKNKLS-GTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHL 88 (223)
Q Consensus 10 ~~L~~L~l~~n~i~-~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 88 (223)
++|+.|++++|.+. +.+|.. +...+.|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666655 445542 23344456666666665543 445556666666666666655455555555666666
Q ss_pred EcccCccccc-CCccccCCCCCCEEECCCCccccccc---hhhhCCCCCCEEecc
Q 048080 89 SMQDNSFTGS-IPSTLSSLKSITELDLSRNNLSGHIP---QYLENLSFLSFLNLS 139 (223)
Q Consensus 89 ~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~l~l~ 139 (223)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666665542 22445556666666666666654433 345556666665554
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.7e-19 Score=154.11 Aligned_cols=159 Identities=19% Similarity=0.122 Sum_probs=92.7
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCc----------------CCCCCCCCCeEecc
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPA----------------EVGNLKHLVSLDIS 67 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~----------------~~~~l~~L~~L~l~ 67 (223)
.+|+++++|++|++++|.+.+..| +..++.|++|++++|.+++..+. ....+++|++|+++
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~ 128 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECC
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECC
Confidence 445555555555555555552222 33444455555555555432211 00113344555555
Q ss_pred CccccccCCccccCCCCCcEEEcccCcccccCCcccc-CCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCccc
Q 048080 68 SNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLS-SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK 146 (223)
Q Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 146 (223)
+|.+++..|..|..+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC
Confidence 5555555555666666777777777777666666554 56677777777777765522 33477777888888887776
Q ss_pred CCchhhhcCCcceeecCCCCC
Q 048080 147 VPIEAIFNSTKGISLVGNENL 167 (223)
Q Consensus 147 ~~~~~~~~~l~~l~~~~n~~~ 167 (223)
.+.......+..+++++|...
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCC
T ss_pred CHhHcCCCCccEEEecCCcCc
Confidence 555556677888888887653
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.8e-18 Score=149.98 Aligned_cols=150 Identities=27% Similarity=0.278 Sum_probs=123.2
Q ss_pred CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080 5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS 84 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 84 (223)
.++.+++|+.|+|++|.+. .++. +..++.|+.|+|++|.+.+. + .+..+++|+.|+|++|.+.+. ..+..+++
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~ 132 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ 132 (605)
T ss_dssp TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTT
T ss_pred HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCc
Confidence 6888999999999999998 6665 56677889999999999853 3 688899999999999999864 45888999
Q ss_pred CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080 85 LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164 (223)
Q Consensus 85 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n 164 (223)
|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|++++|.+++. +....+..++.+++.+|
T Consensus 133 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSE
T ss_pred cCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCC
Confidence 99999999999865 568889999999999999987766 88899999999999998864 44455667777777776
Q ss_pred CC
Q 048080 165 EN 166 (223)
Q Consensus 165 ~~ 166 (223)
+.
T Consensus 208 ~l 209 (605)
T 1m9s_A 208 EC 209 (605)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 96
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.77 E-value=4.9e-18 Score=126.06 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=107.8
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
+|..+. ++|+.|++++|++. .+|...+...+.|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..
T Consensus 22 ~p~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 22 VPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98 (177)
T ss_dssp CCTTCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCC--CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhC
Confidence 565444 78999999999998 788877788888999999999999888888999999999999999999888888999
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccc
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP 124 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 124 (223)
+++|++|++++|.+++..+..|..+++|++|++++|.+++..|
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999999997777778999999999999999997655
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.7e-18 Score=140.10 Aligned_cols=154 Identities=23% Similarity=0.170 Sum_probs=85.7
Q ss_pred CCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccc-----------------
Q 048080 9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMF----------------- 71 (223)
Q Consensus 9 l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----------------- 71 (223)
+++|++|++++|.+. .++...+...+.|++|++++|.+++..+ |..+++|++|++++|.+
T Consensus 33 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (317)
T ss_dssp GGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred CCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence 345555555555555 4443344444455555555555553332 44445555554444444
Q ss_pred -----------------------cccCCccccCCCCCcEEEcccCcccccCCccc-cCCCCCCEEECCCCccccccchhh
Q 048080 72 -----------------------SGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTL-SSLKSITELDLSRNNLSGHIPQYL 127 (223)
Q Consensus 72 -----------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~~~ 127 (223)
++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++. +. .
T Consensus 110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~ 187 (317)
T 3o53_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-Q 187 (317)
T ss_dssp CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-C
T ss_pred ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-c
Confidence 43334455555666666666666665554444 2456666666666666644 22 2
Q ss_pred hCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCCCC
Q 048080 128 ENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNENL 167 (223)
Q Consensus 128 ~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~~~ 167 (223)
..+++|+.|++++|.+++..+.......++.+++++|...
T Consensus 188 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc
Confidence 2366777777777777755444455667777888887653
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=4.4e-18 Score=136.21 Aligned_cols=149 Identities=22% Similarity=0.259 Sum_probs=128.8
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL 85 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 85 (223)
++.+++|+.|++++|.+. .++. +...+.|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred hhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC
Confidence 346788999999999998 7764 5667888999999999996655 89999999999999999864 348999999
Q ss_pred cEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCC
Q 048080 86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNE 165 (223)
Q Consensus 86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~ 165 (223)
+.|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ ......++.+++++|.
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc
Confidence 9999999999964 4688999999999999999966 578999999999999999997655 5567788899999986
Q ss_pred C
Q 048080 166 N 166 (223)
Q Consensus 166 ~ 166 (223)
.
T Consensus 190 i 190 (291)
T 1h6t_A 190 I 190 (291)
T ss_dssp C
T ss_pred C
Confidence 5
No 99
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.76 E-value=6.5e-18 Score=124.78 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=75.0
Q ss_pred eEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080 38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117 (223)
Q Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 117 (223)
+.+++++|.++. +|..+ .++|++|++++|.++++.|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666666663 34333 256677777777777666667777777777777777777666666677777777777777
Q ss_pred ccccccchhhhCCCCCCEEeccCCcCcccCC
Q 048080 118 NLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 118 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 148 (223)
++++..+..|..+++|+.|++++|++.|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 7776666667777777777777777777765
No 100
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=2.2e-19 Score=160.14 Aligned_cols=141 Identities=26% Similarity=0.307 Sum_probs=106.0
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCC
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGC 82 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 82 (223)
|+.|..++.|+.|+|++|.+. .+|..++. ++.|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 567888888889999998888 88888774 556688899999888 77788888888999999999888 568888888
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCC-CCEEeccCCcCcccCC
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF-LSFLNLSYNHFEGKVP 148 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~l~l~~N~l~~~~~ 148 (223)
++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 88999999998887 66777888888999999999888887776644321 1224455555555444
No 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.76 E-value=4.4e-18 Score=122.75 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=109.4
Q ss_pred cCCceEEEccCCccc-ccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEE
Q 048080 34 ITRSVLLDLFDNLLS-GHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112 (223)
Q Consensus 34 ~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 112 (223)
.+.++.|++++|.++ +..|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 466799999999998 77888889999999999999999976 778999999999999999998788888889999999
Q ss_pred ECCCCccccc-cchhhhCCCCCCEEeccCCcCcccCC----chhhhcCCcceeec
Q 048080 113 DLSRNNLSGH-IPQYLENLSFLSFLNLSYNHFEGKVP----IEAIFNSTKGISLV 162 (223)
Q Consensus 113 ~L~~N~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~~----~~~~~~~l~~l~~~ 162 (223)
++++|.+++. .+..+..+++|+.|++++|++++..+ ....+..++.++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999974 44789999999999999999997655 23445566666543
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=9.6e-18 Score=132.34 Aligned_cols=132 Identities=21% Similarity=0.231 Sum_probs=115.3
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
+| .++.+++|++|++++|++. .++. +..++.|++|++++|.+++..+ +.. ++|++|++++|.+++. ..+..
T Consensus 56 l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~ 126 (263)
T 1xeu_A 56 LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIH 126 (263)
T ss_dssp CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTT
T ss_pred ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcC
Confidence 45 6889999999999999998 7776 6677888999999999996443 233 8999999999999975 46899
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCccc
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK 146 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 146 (223)
+++|+.|++++|++++. + .+..+++|+.|++++|.+++. ..+..+++|+.|++++|++.+.
T Consensus 127 l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 99999999999999965 4 689999999999999999976 6789999999999999999865
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=4.4e-18 Score=125.17 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=113.8
Q ss_pred cCCceEEEccCCccc-ccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEE
Q 048080 34 ITRSVLLDLFDNLLS-GHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITEL 112 (223)
Q Consensus 34 ~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 112 (223)
++.++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 466799999999998 67788889999999999999999976 788999999999999999998788888889999999
Q ss_pred ECCCCcccccc-chhhhCCCCCCEEeccCCcCcccCC----chhhhcCCcceeecCCCC
Q 048080 113 DLSRNNLSGHI-PQYLENLSFLSFLNLSYNHFEGKVP----IEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 113 ~L~~N~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~~----~~~~~~~l~~l~~~~n~~ 166 (223)
++++|.+++.. +..+..+++|+.|++++|++++..+ ....+..++.+++.+|..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 99999999653 2789999999999999999997655 334567788888887754
No 104
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=7.2e-18 Score=143.23 Aligned_cols=152 Identities=24% Similarity=0.296 Sum_probs=94.5
Q ss_pred CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080 5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS 84 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 84 (223)
.+..+++|+.|++++|.+. .++. +...+.|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++
T Consensus 238 ~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 310 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 310 (466)
T ss_dssp GGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred hhhcCCCCCEEECCCCccc-cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence 3445555666666666555 3332 3444555666666666654333 5566666666666666665433 566677
Q ss_pred CcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080 85 LEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164 (223)
Q Consensus 85 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n 164 (223)
|+.|++++|++++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| ......++.+++.+|
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCE
T ss_pred CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCC
Confidence 7777777777765544 56667777777777777654 356777777777777777776655 445566667777776
Q ss_pred CCCC
Q 048080 165 ENLC 168 (223)
Q Consensus 165 ~~~C 168 (223)
++..
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 5543
No 105
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.74 E-value=2.5e-17 Score=122.13 Aligned_cols=108 Identities=21% Similarity=0.284 Sum_probs=69.9
Q ss_pred eEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080 38 VLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117 (223)
Q Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 117 (223)
+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666665 3443332 56666666666666666666666667777777777776555555666677777777777
Q ss_pred ccccccchhhhCCCCCCEEeccCCcCcccCC
Q 048080 118 NLSGHIPQYLENLSFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 118 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 148 (223)
++++..+..|..+++|+.|++++|++.|.++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7775555556677777777777777776655
No 106
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.73 E-value=2e-17 Score=122.11 Aligned_cols=109 Identities=24% Similarity=0.301 Sum_probs=99.9
Q ss_pred CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080 11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM 90 (223)
Q Consensus 11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 90 (223)
..+.+++++|++. .+|..++ +.+++|++++|.+++..|..|..+++|++|++++|.++++.+..|..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4688999999998 8997663 67799999999999988999999999999999999999888888999999999999
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCcccccc
Q 048080 91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHI 123 (223)
Q Consensus 91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 123 (223)
++|++++..++.|..+++|++|+|++|.++...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999999888888999999999999999998554
No 107
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=4.2e-17 Score=133.10 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=92.1
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL 85 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 85 (223)
+..+++|+.|++++|.+. .++. +...+.|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L 245 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL 245 (347)
T ss_dssp GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence 334444444444444444 3332 3334444555555555443322 5566677777777777765433 6677777
Q ss_pred cEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch-hhhcCCcceeecCC
Q 048080 86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE-AIFNSTKGISLVGN 164 (223)
Q Consensus 86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~l~~l~~~~n 164 (223)
+.|++++|.+++. ..+..+++|++|++++|.+++. +.+..+++|+.|++++|++.+..+.. .....++.+++++|
T Consensus 246 ~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 246 TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 7777777777643 3467777777777777777754 34677777788888877777554432 34566777778777
Q ss_pred CCCC
Q 048080 165 ENLC 168 (223)
Q Consensus 165 ~~~C 168 (223)
+...
T Consensus 322 ~l~~ 325 (347)
T 4fmz_A 322 HITD 325 (347)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6543
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.4e-18 Score=150.98 Aligned_cols=109 Identities=27% Similarity=0.295 Sum_probs=99.2
Q ss_pred CceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECC
Q 048080 36 RSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLS 115 (223)
Q Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 115 (223)
.|+.|++++|.+++ +|. |..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .+..+++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 46899999999996 565 899999999999999999 778899999999999999999996 56 79999999999999
Q ss_pred CCcccccc-chhhhCCCCCCEEeccCCcCcccCCc
Q 048080 116 RNNLSGHI-PQYLENLSFLSFLNLSYNHFEGKVPI 149 (223)
Q Consensus 116 ~N~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~~~ 149 (223)
+|.+++.. |..+..+++|+.|++++|++++..+.
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 99999887 99999999999999999999987664
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.9e-17 Score=142.77 Aligned_cols=149 Identities=22% Similarity=0.257 Sum_probs=129.7
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL 85 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 85 (223)
+..+++|+.|++++|.+. .+|. +..++.|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++. ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence 346789999999999998 7774 5667888999999999997655 88999999999999999864 368999999
Q ss_pred cEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcceeecCCC
Q 048080 86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNE 165 (223)
Q Consensus 86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~ 165 (223)
+.|+|++|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.+..| ...+..++.+++++|.
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence 9999999999954 4589999999999999999966 578999999999999999998766 5567788999999986
Q ss_pred C
Q 048080 166 N 166 (223)
Q Consensus 166 ~ 166 (223)
.
T Consensus 187 i 187 (605)
T 1m9s_A 187 I 187 (605)
T ss_dssp C
T ss_pred C
Confidence 5
No 110
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.2e-16 Score=135.63 Aligned_cols=103 Identities=29% Similarity=0.507 Sum_probs=46.1
Q ss_pred CCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCC
Q 048080 55 VGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLS 134 (223)
Q Consensus 55 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 134 (223)
+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 3344444444444444443322 4444445555555554443322 4444455555555555543322 44445555
Q ss_pred EEeccCCcCcccCCchhhhcCCcceeecCC
Q 048080 135 FLNLSYNHFEGKVPIEAIFNSTKGISLVGN 164 (223)
Q Consensus 135 ~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n 164 (223)
.|++++|++++..+ ......++.+++.+|
T Consensus 313 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 313 YLTLYFNNISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp EEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred EEECcCCcCCCchh-hccCccCCEeECCCC
Confidence 55555555544333 223334444444444
No 111
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.71 E-value=7.2e-17 Score=119.63 Aligned_cols=107 Identities=23% Similarity=0.256 Sum_probs=97.7
Q ss_pred CCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcc
Q 048080 12 LILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQ 91 (223)
Q Consensus 12 L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (223)
-+.+++++|++. ++|..++ +.|++|++++|.+++..|..|..+++|++|+|++|.++++.+..|..+++|+.|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 478999999997 9998664 677999999999999889999999999999999999998877788999999999999
Q ss_pred cCcccccCCccccCCCCCCEEECCCCccccc
Q 048080 92 DNSFTGSIPSTLSSLKSITELDLSRNNLSGH 122 (223)
Q Consensus 92 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 122 (223)
+|++++..+..|..+++|++|+|++|.+...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999977777799999999999999999844
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=1.5e-18 Score=144.02 Aligned_cols=110 Identities=25% Similarity=0.282 Sum_probs=53.7
Q ss_pred CCCCCCeEeccCccccc-----cCCccccCCCCCcEEEcccCccc----ccCCccccCCCCCCEEECCCCccccc----c
Q 048080 57 NLKHLVSLDISSNMFSG-----EIPTTLGGCTSLEHLSMQDNSFT----GSIPSTLSSLKSITELDLSRNNLSGH----I 123 (223)
Q Consensus 57 ~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~----~ 123 (223)
.+++|++|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|++|+|++|.+++. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 34445555555554441 22224445555555555555553 34444555555555555555555543 3
Q ss_pred chhhhC--CCCCCEEeccCCcCcc----cCCch--hhhcCCcceeecCCCC
Q 048080 124 PQYLEN--LSFLSFLNLSYNHFEG----KVPIE--AIFNSTKGISLVGNEN 166 (223)
Q Consensus 124 p~~~~~--l~~L~~l~l~~N~l~~----~~~~~--~~~~~l~~l~~~~n~~ 166 (223)
+..+.. +++|+.|++++|.++. .++.. ..++.++.+++.+|+.
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 344422 5555556665555554 12221 1135555555555543
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=6.3e-17 Score=132.65 Aligned_cols=163 Identities=17% Similarity=0.072 Sum_probs=101.5
Q ss_pred CCCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccC-CcCCCCCCCCCe-EeccCccccccCCcc
Q 048080 1 NRPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHF-PAEVGNLKHLVS-LDISSNMFSGEIPTT 78 (223)
Q Consensus 1 ~ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~l~~n~l~~~~~~~ 78 (223)
+||..+. +++++|++++|+|+ .+|++.|..++.|++|+|++|.+.+.+ +.+|.+++++++ +.+..|.++.+.|+.
T Consensus 23 ~iP~~l~--~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 23 EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp SCCTTCC--TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCcCcC--CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 3565553 56777777777776 777766777777777777777764433 356667766654 445556777666667
Q ss_pred ccCCCCCcEEEcccCcccccCCc-------------------------cccCC-CCCCEEECCCCccccccchhhhCCCC
Q 048080 79 LGGCTSLEHLSMQDNSFTGSIPS-------------------------TLSSL-KSITELDLSRNNLSGHIPQYLENLSF 132 (223)
Q Consensus 79 ~~~l~~L~~L~L~~N~l~~~~~~-------------------------~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~ 132 (223)
|..+++|++|++++|+++...+. .|..+ ..++.|++++|+++.+.+.. ....+
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~-f~~~~ 178 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-FNGTQ 178 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS-STTEE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh-ccccc
Confidence 77777777777777766643332 33333 24666777777777443333 34456
Q ss_pred CCEEeccCCcCcccCCch--hhhcCCcceeecCCCCC
Q 048080 133 LSFLNLSYNHFEGKVPIE--AIFNSTKGISLVGNENL 167 (223)
Q Consensus 133 L~~l~l~~N~l~~~~~~~--~~~~~l~~l~~~~n~~~ 167 (223)
|+.+++.+|.....+|.. .....++.+++++|...
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 777777653333344432 44677888888888654
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=7.6e-18 Score=136.88 Aligned_cols=162 Identities=20% Similarity=0.193 Sum_probs=124.6
Q ss_pred CCCCCCCCCCCeeecccCccccC-CChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCc-ccccc-CCccc
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGT-VPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN-MFSGE-IPTTL 79 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~-~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~ 79 (223)
++.+..+++|++|++++|.+.+. +|. .+...+.|++|++++|.+++..+..+..+++|++|++++| .+++. .+..+
T Consensus 86 ~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 86 LAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred chhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 44566789999999999988744 444 4556677899999999988777778888999999999998 57653 45567
Q ss_pred cCCCCCcEEEcccC-ccccc-CCccccCCC-CCCEEECCCC--ccc-cccchhhhCCCCCCEEeccCCc-CcccCC-chh
Q 048080 80 GGCTSLEHLSMQDN-SFTGS-IPSTLSSLK-SITELDLSRN--NLS-GHIPQYLENLSFLSFLNLSYNH-FEGKVP-IEA 151 (223)
Q Consensus 80 ~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~L~~N--~l~-~~~p~~~~~l~~L~~l~l~~N~-l~~~~~-~~~ 151 (223)
..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+ ...
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 78899999999999 88754 466677888 8999999998 455 4567777888999999999988 554333 334
Q ss_pred hhcCCcceeecCCC
Q 048080 152 IFNSTKGISLVGNE 165 (223)
Q Consensus 152 ~~~~l~~l~~~~n~ 165 (223)
....++.+++.+|.
T Consensus 245 ~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 245 QLNYLQHLSLSRCY 258 (336)
T ss_dssp GCTTCCEEECTTCT
T ss_pred CCCCCCEeeCCCCC
Confidence 55778888888875
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=2.3e-16 Score=136.78 Aligned_cols=14 Identities=57% Similarity=0.721 Sum_probs=5.8
Q ss_pred CCCcEEEcccCccc
Q 048080 83 TSLEHLSMQDNSFT 96 (223)
Q Consensus 83 ~~L~~L~L~~N~l~ 96 (223)
++|+.|++++|.++
T Consensus 160 ~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 160 TSLEVLSVRNNQLT 173 (571)
T ss_dssp TTCCEEECCSSCCS
T ss_pred CCcCEEECCCCCCC
Confidence 34444444444444
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.69 E-value=1.3e-16 Score=118.34 Aligned_cols=129 Identities=19% Similarity=0.146 Sum_probs=106.6
Q ss_pred hccCCceEEEccCCcccccCCcCCCCCC-CCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCC
Q 048080 32 RIITRSVLLDLFDNLLSGHFPAEVGNLK-HLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSIT 110 (223)
Q Consensus 32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 110 (223)
.....|++|++++|.++. ++. +..+. +|++|++++|.+++. ..|..+++|++|++++|.+++..+..|..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 446677999999999995 454 44444 999999999999976 6789999999999999999977666679999999
Q ss_pred EEECCCCccccccch--hhhCCCCCCEEeccCCcCcccCCc----hhhhcCCcceeecCCC
Q 048080 111 ELDLSRNNLSGHIPQ--YLENLSFLSFLNLSYNHFEGKVPI----EAIFNSTKGISLVGNE 165 (223)
Q Consensus 111 ~L~L~~N~l~~~~p~--~~~~l~~L~~l~l~~N~l~~~~~~----~~~~~~l~~l~~~~n~ 165 (223)
+|++++|.++ .+|. .+..+++|+.|++++|+++...+. ...++.++.+++.+|.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999997 4555 789999999999999999854442 4556777778777664
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=4.9e-16 Score=131.73 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCC
Q 048080 5 SLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTS 84 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 84 (223)
+++.+++|++|++++|.+. .+| +...+.|++|++++|.+++. + +..+++|++|++++|.+++. + +..+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~ 128 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPL 128 (457)
T ss_dssp TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTT
T ss_pred hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCc
Confidence 3444455555555555544 333 23334445555555554432 1 44455555555555555432 1 444455
Q ss_pred CcEEEcccCcccc
Q 048080 85 LEHLSMQDNSFTG 97 (223)
Q Consensus 85 L~~L~L~~N~l~~ 97 (223)
|+.|++++|++++
T Consensus 129 L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 129 LTYLNCARNTLTE 141 (457)
T ss_dssp CCEEECTTSCCSC
T ss_pred CCEEECCCCccce
Confidence 5555555555443
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=4.8e-16 Score=134.83 Aligned_cols=120 Identities=28% Similarity=0.403 Sum_probs=91.6
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
||..+. ++|++|++++|.+. .+| ..++.|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .
T Consensus 74 lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~ 138 (571)
T 3cvr_A 74 LPDNLP--PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---L 138 (571)
T ss_dssp CCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---C
T ss_pred cCHhHc--CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---c
Confidence 566553 67888888888888 788 335677889999998886 555 554 89999999999886 444 5
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCc
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFE 144 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 144 (223)
+++|+.|++++|.+++ +|. .+++|++|+|++|.+++ +|. +. ++|+.|++++|.++
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 7889999999999985 554 46778888888888885 555 44 67777777777776
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=4.7e-17 Score=145.20 Aligned_cols=121 Identities=22% Similarity=0.273 Sum_probs=104.3
Q ss_pred CChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccC
Q 048080 26 VPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSS 105 (223)
Q Consensus 26 ~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 105 (223)
++.+.+.....|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|+++ .+|..|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 44566777888899999999999 66666669999999999999999 78889999999999999999999 77999999
Q ss_pred CCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCch
Q 048080 106 LKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150 (223)
Q Consensus 106 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~ 150 (223)
+++|++|+|++|.++ .+|..|..+++|+.|++++|++++..|..
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 999999999999998 77888999999999999999999876643
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.5e-16 Score=136.79 Aligned_cols=122 Identities=22% Similarity=0.248 Sum_probs=108.4
Q ss_pred CCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080 11 NLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM 90 (223)
Q Consensus 11 ~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 90 (223)
.|+.|++++|.++ .+|. +..++.|+.|++++|.++ .+|..|..+++|+.|++++|.+++ +| .+..+++|+.|+|
T Consensus 442 ~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 5899999999998 7886 566778899999999999 778899999999999999999997 45 8999999999999
Q ss_pred ccCcccccC-CccccCCCCCCEEECCCCccccccch---hhhCCCCCCEEec
Q 048080 91 QDNSFTGSI-PSTLSSLKSITELDLSRNNLSGHIPQ---YLENLSFLSFLNL 138 (223)
Q Consensus 91 ~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~l~l 138 (223)
++|++++.. |..+..+++|+.|+|++|.+++..|. .+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999876 99999999999999999999977553 3445889998864
No 121
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.68 E-value=2e-16 Score=129.29 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=66.4
Q ss_pred EEccCC-cccccCCcCCCCCCCCCeEeccC-ccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080 40 LDLFDN-LLSGHFPAEVGNLKHLVSLDISS-NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117 (223)
Q Consensus 40 L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 117 (223)
++++++ .++ .+|. +..+++|++|+|++ |.++++.+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 555 3444 66666666666664 6666555566666666666666666666666666666666666666666
Q ss_pred ccccccchhhhCCCCCCEEeccCCcCcccCCch
Q 048080 118 NLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIE 150 (223)
Q Consensus 118 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~ 150 (223)
+|++..+..|..++ |+.|++.+|++.|.+...
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCALR 122 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence 66655544454444 666666666666665543
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=1e-15 Score=129.73 Aligned_cols=145 Identities=22% Similarity=0.190 Sum_probs=72.5
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCC---------
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIP--------- 76 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------- 76 (223)
++.+++|++|++++|.+. .+| +..++.|++|++++|.+++. + +..+++|++|++++|.+++...
T Consensus 81 ~~~l~~L~~L~Ls~N~l~-~~~---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L 153 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTEL 153 (457)
T ss_dssp CTTCTTCSEEECCSSCCS-CCC---CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEE
T ss_pred cccCCCCCEEECcCCCCc-eee---cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceeccccCCcCCEE
Confidence 555566666666666665 333 33444555566666655542 2 4555555555555555543210
Q ss_pred ----------ccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCccc
Q 048080 77 ----------TTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK 146 (223)
Q Consensus 77 ----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 146 (223)
-.+..+++|+.|++++|++++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|++++
T Consensus 154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp ECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred ECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence 023344555555555555553 22 44445555555555555533 14455555555555555554
Q ss_pred CCchhhhcCCcceeecCCC
Q 048080 147 VPIEAIFNSTKGISLVGNE 165 (223)
Q Consensus 147 ~~~~~~~~~l~~l~~~~n~ 165 (223)
+| ......++.+++++|.
T Consensus 227 ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 227 ID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CC-CTTCTTCSEEECCSSC
T ss_pred cC-ccccCCCCEEEeeCCc
Confidence 33 2334445555555554
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=2.2e-16 Score=129.40 Aligned_cols=161 Identities=17% Similarity=0.099 Sum_probs=124.5
Q ss_pred CC-CCCCCCCCCCeeecccCccccCCChhhhhccCCce-EEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCc--
Q 048080 2 RP-PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSV-LLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPT-- 77 (223)
Q Consensus 2 ip-~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-- 77 (223)
|| .+|+++++|++|++++|++.+.+|.+.|..++.+. .+.+.+|.+....|..|..+++|++|++++|.+....+.
T Consensus 45 i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (350)
T 4ay9_X 45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124 (350)
T ss_dssp ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh
Confidence 55 47999999999999999997678888887766544 577788999988899999999999999999988754332
Q ss_pred -----------------------cccCCC-CCcEEEcccCcccccCCccccCCCCCCEEECCC-CccccccchhhhCCCC
Q 048080 78 -----------------------TLGGCT-SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSR-NNLSGHIPQYLENLSF 132 (223)
Q Consensus 78 -----------------------~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~ 132 (223)
.|..+. .++.|++++|+++...+..| ...+|+.+++++ |.++.+.+++|..+++
T Consensus 125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcc
Confidence 223332 57889999999996655555 456899999975 7777666678899999
Q ss_pred CCEEeccCCcCcccCCchhhhcCCcceeecCCC
Q 048080 133 LSFLNLSYNHFEGKVPIEAIFNSTKGISLVGNE 165 (223)
Q Consensus 133 L~~l~l~~N~l~~~~~~~~~~~~l~~l~~~~n~ 165 (223)
|+.|++++|+++.. |. ..+..+..+...++.
T Consensus 204 L~~LdLs~N~l~~l-p~-~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 204 PVILDISRTRIHSL-PS-YGLENLKKLRARSTY 234 (350)
T ss_dssp CSEEECTTSCCCCC-CS-SSCTTCCEEECTTCT
T ss_pred cchhhcCCCCcCcc-Ch-hhhccchHhhhccCC
Confidence 99999999999954 43 235666666655543
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=1.6e-17 Score=136.76 Aligned_cols=162 Identities=22% Similarity=0.219 Sum_probs=85.1
Q ss_pred CCCCC-CCCeeecccCccccCCChhhhhc----cCCceEEEccCCcccccCCcC----CCCC-CCCCeEeccCccccccC
Q 048080 6 LGNCQ-NLILLTTCKNKLSGTVPRQLLRI----ITRSVLLDLFDNLLSGHFPAE----VGNL-KHLVSLDISSNMFSGEI 75 (223)
Q Consensus 6 ~~~l~-~L~~L~l~~n~i~~~~p~~~~~~----~~~l~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~ 75 (223)
|.+++ +|++|++++|.+.+..+..+... .+.|++|++++|.+++..+.. +..+ ++|++|++++|.+++..
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 34444 55556666655553323322222 144556666666555443332 2222 56666666666665444
Q ss_pred Cccc----cC-CCCCcEEEcccCcccccCC----ccccCCC-CCCEEECCCCccccccchhh----hCC-CCCCEEeccC
Q 048080 76 PTTL----GG-CTSLEHLSMQDNSFTGSIP----STLSSLK-SITELDLSRNNLSGHIPQYL----ENL-SFLSFLNLSY 140 (223)
Q Consensus 76 ~~~~----~~-l~~L~~L~L~~N~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~l~l~~ 140 (223)
+..+ .. ..+|++|++++|.+++..+ ..+..++ +|++|+|++|.+++..+..+ ... ++|+.|++++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 4332 22 2466666666666664222 2233443 67777777777765555433 334 4777777777
Q ss_pred CcCcccCCc----h-hh-hcCCcceeecCCCCC
Q 048080 141 NHFEGKVPI----E-AI-FNSTKGISLVGNENL 167 (223)
Q Consensus 141 N~l~~~~~~----~-~~-~~~l~~l~~~~n~~~ 167 (223)
|.+...... . .. ...++.+++++|...
T Consensus 206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred CCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 777652211 1 11 236777888877653
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=1.3e-17 Score=135.57 Aligned_cols=161 Identities=18% Similarity=0.217 Sum_probs=108.6
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCC-ccccc-CCcCCCCCCCCCeEeccCc-ccccc-CCcc
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDN-LLSGH-FPAEVGNLKHLVSLDISSN-MFSGE-IPTT 78 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~ 78 (223)
|..+..+++|++|++++|.+.+..+..+.. .+.|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 445677888888888888877555554443 667788888888 56642 4455667788888888888 77653 3555
Q ss_pred ccCCC-CCcEEEcccC--ccc-ccCCccccCCCCCCEEECCCCc-cccccchhhhCCCCCCEEeccCCc-Cccc-CCchh
Q 048080 79 LGGCT-SLEHLSMQDN--SFT-GSIPSTLSSLKSITELDLSRNN-LSGHIPQYLENLSFLSFLNLSYNH-FEGK-VPIEA 151 (223)
Q Consensus 79 ~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~l~l~~N~-l~~~-~~~~~ 151 (223)
+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +... .....
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 269 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 269 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence 67777 8888888888 444 3455566677788888888887 666666677777888888888874 2211 00123
Q ss_pred hhcCCcceeecCC
Q 048080 152 IFNSTKGISLVGN 164 (223)
Q Consensus 152 ~~~~l~~l~~~~n 164 (223)
....++.+++.++
T Consensus 270 ~~~~L~~L~l~~~ 282 (336)
T 2ast_B 270 EIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEeccCc
Confidence 3556666666655
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.66 E-value=6.9e-19 Score=133.07 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=113.9
Q ss_pred CCCCCCCCeeecccCccccCCCh-----hhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCcccc
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPR-----QLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLG 80 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~-----~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 80 (223)
+.....++.++++.+.+.+.+|. ..+...+.|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34456777888888888777665 234556777999999999996 55 8888999999999999998 5677777
Q ss_pred CCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCcccCCc
Q 048080 81 GCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKVPI 149 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~~~ 149 (223)
.+++|+.|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+.+|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 78999999999999996 44 58888999999999999996443 5788999999999999999887654
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=2.1e-16 Score=133.87 Aligned_cols=97 Identities=25% Similarity=0.338 Sum_probs=59.7
Q ss_pred CCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEec
Q 048080 59 KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNL 138 (223)
Q Consensus 59 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l 138 (223)
++|++|++++|.+++ .| .|..+++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .+..+++|+.|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 456666666666664 34 36666667777777776663 34322 366777777777764 34 4677777777777
Q ss_pred cCCcCcccCCchhhhcCCcceeecCCCC
Q 048080 139 SYNHFEGKVPIEAIFNSTKGISLVGNEN 166 (223)
Q Consensus 139 ~~N~l~~~~~~~~~~~~l~~l~~~~n~~ 166 (223)
++|.+.+ +|. ....++.+++++|..
T Consensus 203 ~~N~l~~-l~~--~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 203 DNNSLKK-LPD--LPLSLESIVAGNNIL 227 (454)
T ss_dssp CSSCCSS-CCC--CCTTCCEEECCSSCC
T ss_pred CCCcCCc-CCC--CcCcccEEECcCCcC
Confidence 7777765 221 124666677766643
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.65 E-value=1.7e-18 Score=130.91 Aligned_cols=136 Identities=20% Similarity=0.163 Sum_probs=114.3
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
||.+|+.+++|++|++++|.+. .+| .+...+.|++|++++|.++ .+|..+..+++|++|++++|.+++. | .+..
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~ 113 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEK 113 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-cccc
Confidence 3448899999999999999998 688 4556677899999999999 5677777789999999999999964 3 6888
Q ss_pred CCCCcEEEcccCcccccCC-ccccCCCCCCEEECCCCccccccch----------hhhCCCCCCEEeccCCcCcc
Q 048080 82 CTSLEHLSMQDNSFTGSIP-STLSSLKSITELDLSRNNLSGHIPQ----------YLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~----------~~~~l~~L~~l~l~~N~l~~ 145 (223)
+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+..+++|+.|| +|+++.
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999999999999995433 4688999999999999999877664 378899999987 677664
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=2.2e-17 Score=136.94 Aligned_cols=107 Identities=20% Similarity=0.180 Sum_probs=55.9
Q ss_pred CCCCeEeccCcccc-ccCC---ccccCCCCCcEEEcccCcccc-----cCCccccCCCCCCEEECCCCccc----cccch
Q 048080 59 KHLVSLDISSNMFS-GEIP---TTLGGCTSLEHLSMQDNSFTG-----SIPSTLSSLKSITELDLSRNNLS----GHIPQ 125 (223)
Q Consensus 59 ~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~p~ 125 (223)
++|++|++++|.++ ...+ ..+..+++|+.|++++|.++. ..+..+..+++|++|+|++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 45555555555544 1122 234445556666666665551 22334555666666666666664 34555
Q ss_pred hhhCCCCCCEEeccCCcCccc----CCch-h--hhcCCcceeecCCC
Q 048080 126 YLENLSFLSFLNLSYNHFEGK----VPIE-A--IFNSTKGISLVGNE 165 (223)
Q Consensus 126 ~~~~l~~L~~l~l~~N~l~~~----~~~~-~--~~~~l~~l~~~~n~ 165 (223)
.+..+++|+.|++++|.+++. ++.. . ....++.+++++|.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 566666666666666666543 1111 0 13455666666654
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=6.1e-17 Score=133.26 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=26.3
Q ss_pred CceEEEccCCcccccCCcCCCCC-----CCCCeEeccCccccccCCccc----cCC-CCCcEEEcccCcccc
Q 048080 36 RSVLLDLFDNLLSGHFPAEVGNL-----KHLVSLDISSNMFSGEIPTTL----GGC-TSLEHLSMQDNSFTG 97 (223)
Q Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~L~~N~l~~ 97 (223)
.|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+ ..+ ++|+.|++++|.+++
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 34444444444443333333332 444444444444443333322 222 444444444444443
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=7.9e-15 Score=124.25 Aligned_cols=126 Identities=25% Similarity=0.329 Sum_probs=78.0
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccC
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGG 81 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 81 (223)
|| +|+++++|++|++++|++. .+|.. ...|++|++++|.+++ .| .|..+++|++|++++|.+++ .|..
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--- 213 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--- 213 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---
Confidence 45 4777777777777777776 56643 2356777777777775 44 46777777777777777764 2322
Q ss_pred CCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080 82 CTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 82 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 145 (223)
.++|+.|++++|.++ .+|+ +..+++|++|++++|++++ +|.. +++|+.|++++|.+.+
T Consensus 214 ~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence 146666666666666 4453 6666667777777776664 2321 2445555555555443
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.60 E-value=1.8e-15 Score=123.65 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=104.4
Q ss_pred CeeecccC-ccccCCChhhhhccCCceEEEccC-CcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEc
Q 048080 13 ILLTTCKN-KLSGTVPRQLLRIITRSVLLDLFD-NLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSM 90 (223)
Q Consensus 13 ~~L~l~~n-~i~~~~p~~~~~~~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 90 (223)
..++.+++ +++ .+|. +...+.|++|+|++ |.+.+..+..|.++++|++|+|++|.++++.|..|.++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 45788888 898 8998 45566789999996 9999888899999999999999999999999999999999999999
Q ss_pred ccCcccccCCccccCCCCCCEEECCCCccccccc-hhhhCCCCCCEEeccCCcCcccCC
Q 048080 91 QDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 91 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~~ 148 (223)
++|+|++..+..|..++ |+.|+|.+|.+..... ..|..+.......+..+.+.|..|
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 99999987777777776 9999999999984332 223322222223344455665544
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=1.9e-16 Score=133.89 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=68.4
Q ss_pred CCCCCCCCCCCeeecccCccccCCChhhhhccC----CceEEEccCCcccc----cCCcCCCCCCCCCeEeccCcccccc
Q 048080 3 PPSLGNCQNLILLTTCKNKLSGTVPRQLLRIIT----RSVLLDLFDNLLSG----HFPAEVGNLKHLVSLDISSNMFSGE 74 (223)
Q Consensus 3 p~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~----~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~ 74 (223)
|+.+..+++|++|++++|.+.+..+..++.... .|++|++++|.+.. .++..+..+++|++|++++|.+++.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 344556677777777777776434444444444 46777777777763 3456667777777777777776543
Q ss_pred CCccc-----cCCCCCcEEEcccCcccccC----CccccCCCCCCEEECCCCcccc
Q 048080 75 IPTTL-----GGCTSLEHLSMQDNSFTGSI----PSTLSSLKSITELDLSRNNLSG 121 (223)
Q Consensus 75 ~~~~~-----~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~ 121 (223)
.+..+ ...++|++|++++|.+++.. +..+..+++|++|++++|.+++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 33222 12345666666666555422 3333444555555555555543
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=3.8e-14 Score=124.18 Aligned_cols=61 Identities=25% Similarity=0.325 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccc
Q 048080 2 RPPSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSG 73 (223)
Q Consensus 2 ip~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 73 (223)
||..+. ++|++|++++|.++ .+|. .++.|++|++++|.++. +|. .+++|++|++++|.+++
T Consensus 55 lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 55 LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC
T ss_pred cChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC
Confidence 565554 66777777777776 6665 34556777777777663 333 44566666666666554
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=3.8e-14 Score=124.22 Aligned_cols=75 Identities=27% Similarity=0.339 Sum_probs=35.6
Q ss_pred CCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCc-hhhhcCCcceee
Q 048080 83 TSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPI-EAIFNSTKGISL 161 (223)
Q Consensus 83 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~-~~~~~~l~~l~~ 161 (223)
++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|. ......+..+++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 344555555555542 22 22344555555555555 2232 3445555555555555 2232 233444555555
Q ss_pred cCCCC
Q 048080 162 VGNEN 166 (223)
Q Consensus 162 ~~n~~ 166 (223)
.+|+.
T Consensus 292 ~~N~l 296 (622)
T 3g06_A 292 EGNPL 296 (622)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 55554
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=6.8e-17 Score=136.58 Aligned_cols=86 Identities=19% Similarity=0.060 Sum_probs=39.8
Q ss_pred CCCCeeecccCccccC----CChhhhhccCCceEEEccCCcccccC-----CcCCCCCCCCCeEeccCcccccc----CC
Q 048080 10 QNLILLTTCKNKLSGT----VPRQLLRIITRSVLLDLFDNLLSGHF-----PAEVGNLKHLVSLDISSNMFSGE----IP 76 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~----~p~~~~~~~~~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~ 76 (223)
++|++|++++|.+.+. ++.. +...+.|++|++++|.+.... +..+..+++|++|++++|.++.. .+
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 4555666666655521 2221 223344455555555554321 11222345555555555555432 23
Q ss_pred ccccCCCCCcEEEcccCccc
Q 048080 77 TTLGGCTSLEHLSMQDNSFT 96 (223)
Q Consensus 77 ~~~~~l~~L~~L~L~~N~l~ 96 (223)
..+..+++|++|++++|.++
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCH
T ss_pred HHHhhCCCcceEECCCCCCc
Confidence 33444555555555555554
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=1.1e-13 Score=112.36 Aligned_cols=56 Identities=7% Similarity=0.106 Sum_probs=41.4
Q ss_pred CCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEec
Q 048080 9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDI 66 (223)
Q Consensus 9 l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 66 (223)
+++|+.|++.+ .+. .+++..|...+.|+++++.+|.+..+.+.+|.++.++..+..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecC
Confidence 89999999988 787 888888888888899999988876555555555444444433
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=1e-13 Score=112.55 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=104.2
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcc----cccCCcCC------------------------
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLL----SGHFPAEV------------------------ 55 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l----~~~~~~~~------------------------ 55 (223)
.+|.++++|+.+++.+|.+. .+++..|.....+..+.+..+.. ....+.+|
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~ 196 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK 196 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred HHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhh
Confidence 57999999999999999987 78887777665556555544221 00011111
Q ss_pred --------------------------CCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCC
Q 048080 56 --------------------------GNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSI 109 (223)
Q Consensus 56 --------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 109 (223)
..+++|+.+++++|.++.+.+.+|.++.+|+.+++.+| ++.+.+.+|.++++|
T Consensus 197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL 275 (329)
T ss_dssp TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc
Confidence 02678888888888888777778888888888888887 776777788888888
Q ss_pred C-EEECCCCccccccchhhhCCCCCCEEeccCCcCccc
Q 048080 110 T-ELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGK 146 (223)
Q Consensus 110 ~-~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 146 (223)
+ .+++.+ .++.+.+.+|..+++|+.+++++|.+...
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 8 888887 67767778888888888888888887743
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=3.3e-14 Score=117.44 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=83.5
Q ss_pred CCCCeeecccCccccCCChhhhhc----cCCceEEEccCCcccccCCcCC-CCCCCCCeEeccCccccccCCccc-----
Q 048080 10 QNLILLTTCKNKLSGTVPRQLLRI----ITRSVLLDLFDNLLSGHFPAEV-GNLKHLVSLDISSNMFSGEIPTTL----- 79 (223)
Q Consensus 10 ~~L~~L~l~~n~i~~~~p~~~~~~----~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~----- 79 (223)
+.|+.|++++|.+...-...+... ...|++|+|++|.+.......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456677777777652222222211 2456677777776653222222 234566677777776654333332
Q ss_pred cCCCCCcEEEcccCccccc----CCccccCCCCCCEEECCCCccccc----cchhhhCCCCCCEEeccCCcCcccCCc--
Q 048080 80 GGCTSLEHLSMQDNSFTGS----IPSTLSSLKSITELDLSRNNLSGH----IPQYLENLSFLSFLNLSYNHFEGKVPI-- 149 (223)
Q Consensus 80 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~~~~~~-- 149 (223)
...++|+.|+|++|.++.. ++..+...++|++|+|++|.++.. ++..+...++|+.|++++|.++.....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345667777777766532 223345566677777777766542 234455566677777777766532111
Q ss_pred ---hhhhcCCcceeecCCCC
Q 048080 150 ---EAIFNSTKGISLVGNEN 166 (223)
Q Consensus 150 ---~~~~~~l~~l~~~~n~~ 166 (223)
......++.+++++|+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHhCCCCCEEeccCCCC
Confidence 01234566666666653
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=4e-14 Score=116.93 Aligned_cols=137 Identities=20% Similarity=0.260 Sum_probs=107.4
Q ss_pred CCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCC-----CCCCCCCeEeccCcccccc----CCccc
Q 048080 9 CQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEV-----GNLKHLVSLDISSNMFSGE----IPTTL 79 (223)
Q Consensus 9 l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~ 79 (223)
.++|+.|++++|.+.+.....+...+..|+.|+|++|.++......+ ...++|++|+|++|.++.. ++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 36899999999999754444555566778999999999975443333 3467899999999999753 33345
Q ss_pred cCCCCCcEEEcccCcccccC----CccccCCCCCCEEECCCCccccc----cchhhhCCCCCCEEeccCCcCcc
Q 048080 80 GGCTSLEHLSMQDNSFTGSI----PSTLSSLKSITELDLSRNNLSGH----IPQYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 80 ~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~~ 145 (223)
..+++|++|+|++|.++... +..+...++|+.|+|++|.++.. +...+...++|+.|++++|.++.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 77899999999999998532 45677788999999999999864 34456677999999999999875
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.28 E-value=5.6e-11 Score=99.02 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=102.0
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCc--------------
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSN-------------- 69 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-------------- 69 (223)
.+|.+|++|+.+++.+|++. .++...|.. ..|+.+.+.++ +..+...+|.++++|+.+++..|
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~-~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L 250 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKIT-KLPASTFVY-AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGI 250 (401)
T ss_dssp STTTTCTTCCEEECTTSCCS-EECTTTTTT-CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCC
T ss_pred HHhhCcccCCeeecCCCcce-EechhhEee-cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCc
Confidence 57889999999999998888 888888874 56688888754 66567777888888887777653
Q ss_pred -------cccccCCccccCCCCCcEEEcccCccc-----ccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEe
Q 048080 70 -------MFSGEIPTTLGGCTSLEHLSMQDNSFT-----GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLN 137 (223)
Q Consensus 70 -------~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ 137 (223)
.++.+...+|.++.+|+.+++.+|.+. ...+.+|.++++|+.+++. +.++.+...+|..+.+|+.++
T Consensus 251 ~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 251 TTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp SEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEE
T ss_pred cEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEE
Confidence 222333455666666777766666543 3445566667777777776 346655566677777777777
Q ss_pred ccCCcCcccCCchhhhcCCcceeecCCC
Q 048080 138 LSYNHFEGKVPIEAIFNSTKGISLVGNE 165 (223)
Q Consensus 138 l~~N~l~~~~~~~~~~~~l~~l~~~~n~ 165 (223)
+..| +...-........++.+.+.+|.
T Consensus 330 lp~~-l~~I~~~aF~~~~L~~l~l~~n~ 356 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNTGIKEVKVEGTT 356 (401)
T ss_dssp ECTT-CCEECTTSSSSSCCCEEEECCSS
T ss_pred ECcc-ccEEcHHhCCCCCCCEEEEcCCC
Confidence 7544 33211111111256667776664
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.20 E-value=1.1e-10 Score=97.25 Aligned_cols=135 Identities=15% Similarity=0.124 Sum_probs=113.1
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccc-----ccCCcc
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFS-----GEIPTT 78 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~ 78 (223)
.+|.++++|+.+++..+ +. .++...|.. ..|+.+.+. +.+..+...+|.++++|+.+.+.+|.+. .+.+..
T Consensus 220 ~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp TTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred hHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 57788888888888875 55 788888887 567888884 4566677899999999999999988765 467788
Q ss_pred ccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcc
Q 048080 79 LGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 145 (223)
|.++.+|+.+++. +.++.....+|.++++|+.+++..| ++.+...+|..+ +|+.+++.+|....
T Consensus 296 F~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 296 LEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred hhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 9999999999999 5588777889999999999999665 776778899999 99999999997763
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.19 E-value=5.8e-12 Score=109.51 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=92.3
Q ss_pred CCCCCCeeecccCccccCCChhhhhcc-CCceEEEccCCcc-cc-cCCcCCCCCCCCCeEeccCccccccCC----cccc
Q 048080 8 NCQNLILLTTCKNKLSGTVPRQLLRII-TRSVLLDLFDNLL-SG-HFPAEVGNLKHLVSLDISSNMFSGEIP----TTLG 80 (223)
Q Consensus 8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~-~~l~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~ 80 (223)
.+++|++|++++|.+.+..+..+.... ..|++|++++|.. .. ..+.....+++|++|++++|.+++... ..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 678899999999888755555454433 3378999988862 11 111222367889999999998876532 2345
Q ss_pred CCCCCcEEEcccCccc----ccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080 81 GCTSLEHLSMQDNSFT----GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY 140 (223)
Q Consensus 81 ~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~ 140 (223)
.+++|+.|++++|.++ +.++..+..+++|+.|++++|.+.+ +|..+..+++|+.++++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence 6788999999998886 2334445677889999999988875 566677777777777764
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.17 E-value=2.3e-12 Score=111.99 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=65.4
Q ss_pred ccCCceEEEccCCcccccCCcCCCC-CCCCCeEecc----Ccccccc-----CCccccCCCCCcEEEcccC--cccccCC
Q 048080 33 IITRSVLLDLFDNLLSGHFPAEVGN-LKHLVSLDIS----SNMFSGE-----IPTTLGGCTSLEHLSMQDN--SFTGSIP 100 (223)
Q Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~L~~N--~l~~~~~ 100 (223)
..+.|++|+++.|.+++.....+.. +++|++|+++ .|.+++. .+..+.++++|+.|+++++ .+++..+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 3444455555555544333333322 4555565554 3444432 1112344556666666532 2333322
Q ss_pred cccc-CCCCCCEEECCCCccccc-cchhhhCCCCCCEEeccCCcCcccCCc--hhhhcCCcceeecCCC
Q 048080 101 STLS-SLKSITELDLSRNNLSGH-IPQYLENLSFLSFLNLSYNHFEGKVPI--EAIFNSTKGISLVGNE 165 (223)
Q Consensus 101 ~~~~-~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~~~--~~~~~~l~~l~~~~n~ 165 (223)
..+. .+++|++|++++|.+++. .+..+..+++|+.|++++|+++..... ......++.+++++|.
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 2222 356666666666666642 334445666677777776665432111 1234556666666665
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.01 E-value=5.2e-11 Score=103.47 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=49.0
Q ss_pred ccCCCCCcEEEcccCcccccCCccccC-CCCCCEEECCCCccccccchhh-hCCCCCCEEeccCCcCcccCCc--hhhhc
Q 048080 79 LGGCTSLEHLSMQDNSFTGSIPSTLSS-LKSITELDLSRNNLSGHIPQYL-ENLSFLSFLNLSYNHFEGKVPI--EAIFN 154 (223)
Q Consensus 79 ~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~l~l~~N~l~~~~~~--~~~~~ 154 (223)
+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|+++..... .....
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34455666666655 444333333333 5667777777777765544444 5577777777777777432211 12345
Q ss_pred CCcceeecCCC
Q 048080 155 STKGISLVGNE 165 (223)
Q Consensus 155 ~l~~l~~~~n~ 165 (223)
.++.+++.+|+
T Consensus 507 ~L~~L~l~~~~ 517 (594)
T 2p1m_B 507 TMRSLWMSSCS 517 (594)
T ss_dssp GSSEEEEESSC
T ss_pred CCCEEeeeCCC
Confidence 66777776664
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.94 E-value=3.9e-10 Score=97.96 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=74.8
Q ss_pred CCCCCCeeecccCccccCCChhhhhccCCceEEEccCC-ccccc-CCcCCCCCCCCCeEeccCccccccCCcccc----C
Q 048080 8 NCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDN-LLSGH-FPAEVGNLKHLVSLDISSNMFSGEIPTTLG----G 81 (223)
Q Consensus 8 ~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~ 81 (223)
.+++|++|++++|.+.+..+..+....+.|++|++++| .+... .+..+..+++|++|++++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 45677777777777765555444444566777777777 44321 223333567777777777776654444333 4
Q ss_pred CCCCcEEEcccCc--ccc-cCCccccCCCCCCEEECCCC-ccccccchhhhCCCCCCEEecc
Q 048080 82 CTSLEHLSMQDNS--FTG-SIPSTLSSLKSITELDLSRN-NLSGHIPQYLENLSFLSFLNLS 139 (223)
Q Consensus 82 l~~L~~L~L~~N~--l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~l~l~ 139 (223)
+++|+.|++++|. ++. .++.....+++|++|++++| .+. .++..+..+++|+.|+++
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECS
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccc
Confidence 5577777777775 221 11111234577777777776 333 244555555555555543
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.88 E-value=1.2e-10 Score=91.46 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=45.7
Q ss_pred cCCCCCcEEEcccCcccc--cCCccccCCCCCCEEECCCCccccccchhhhCCC--CCCEEeccCCcCcccCC
Q 048080 80 GGCTSLEHLSMQDNSFTG--SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS--FLSFLNLSYNHFEGKVP 148 (223)
Q Consensus 80 ~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~l~l~~N~l~~~~~ 148 (223)
..+++|+.|+|++|++++ .+++.+..+++|+.|+|++|++++. ..+..+. +|+.|++++|++++..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 456778888888888776 3345566777888888888887755 2233333 77888888888776555
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=7.7e-10 Score=90.85 Aligned_cols=157 Identities=11% Similarity=0.024 Sum_probs=88.2
Q ss_pred CCCCCCCCCCeeecccCccc---------cCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCcccccc
Q 048080 4 PSLGNCQNLILLTTCKNKLS---------GTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGE 74 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~---------~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 74 (223)
++...+++|+.|.+..+... +.+. .+....+.|+.|++++|.-. ..+. +. +++|++|++..+.+...
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDS 208 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChH
Confidence 34556778888887654321 0122 34455667788888877311 2222 32 67788888877776533
Q ss_pred CCcccc--CCCCCcEEEccc--Cccccc-----CCccc--cCCCCCCEEECCCCccccccchhhh---CCCCCCEEeccC
Q 048080 75 IPTTLG--GCTSLEHLSMQD--NSFTGS-----IPSTL--SSLKSITELDLSRNNLSGHIPQYLE---NLSFLSFLNLSY 140 (223)
Q Consensus 75 ~~~~~~--~l~~L~~L~L~~--N~l~~~-----~~~~~--~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~l~l~~ 140 (223)
....+. .+++|+.|+|+. |...+. +...+ ..+++|++|+|++|.+....+..+. .+++|+.|+++.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 222332 577788877753 221111 01112 2467788888877777654433333 356778888887
Q ss_pred CcCcccC----C-chhhhcCCcceeecCC
Q 048080 141 NHFEGKV----P-IEAIFNSTKGISLVGN 164 (223)
Q Consensus 141 N~l~~~~----~-~~~~~~~l~~l~~~~n 164 (223)
|.+...- + ....+..++.+++..|
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 7776521 1 1134556677777655
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=1.1e-09 Score=81.61 Aligned_cols=111 Identities=16% Similarity=0.168 Sum_probs=67.1
Q ss_pred cCCceEEEccCC-ccccc----CCcCCCCCCCCCeEeccCccccccC----CccccCCCCCcEEEcccCccccc----CC
Q 048080 34 ITRSVLLDLFDN-LLSGH----FPAEVGNLKHLVSLDISSNMFSGEI----PTTLGGCTSLEHLSMQDNSFTGS----IP 100 (223)
Q Consensus 34 ~~~l~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~~ 100 (223)
.+.|++|+|++| .+... +...+...++|++|+|++|.+.... ...+...++|++|+|++|.++.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 455677777776 65532 2233445567777777777765422 22334456777777777777643 23
Q ss_pred ccccCCCCCCEEEC--CCCccccc----cchhhhCCCCCCEEeccCCcCc
Q 048080 101 STLSSLKSITELDL--SRNNLSGH----IPQYLENLSFLSFLNLSYNHFE 144 (223)
Q Consensus 101 ~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~ 144 (223)
.++...++|++|+| ++|.+... +...+...+.|+.|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44555667777777 66777643 2344555567777777777654
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.79 E-value=9.7e-10 Score=86.31 Aligned_cols=96 Identities=23% Similarity=0.287 Sum_probs=67.8
Q ss_pred EEccCCccc---ccCCcCCCCCCCCCeEeccCcccccc--CCccccCCCCCcEEEcccCcccccCCccccCCC--CCCEE
Q 048080 40 LDLFDNLLS---GHFPAEVGNLKHLVSLDISSNMFSGE--IPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLK--SITEL 112 (223)
Q Consensus 40 L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L 112 (223)
++++.|... ...+-....+++|++|+|++|.++++ ++..+..+++|+.|+|++|++++. ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 566666433 21222224577899999999998874 345667889999999999999865 2233333 89999
Q ss_pred ECCCCccccccc-------hhhhCCCCCCEEe
Q 048080 113 DLSRNNLSGHIP-------QYLENLSFLSFLN 137 (223)
Q Consensus 113 ~L~~N~l~~~~p-------~~~~~l~~L~~l~ 137 (223)
+|++|.+.+..| ..+..+|+|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 999999986554 3477889999886
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=9.4e-09 Score=84.38 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=91.3
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCC--CCCCCCeEeccC--cccccc-----CC
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVG--NLKHLVSLDISS--NMFSGE-----IP 76 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~-----~~ 76 (223)
+..+++|+.|++++|.-. .++. .. .+.|+.|++..+.+.......+. .+++|+.|+|+. |...+. +.
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 456789999999887422 4444 22 66789999998887643322332 678999998853 221111 01
Q ss_pred ccc--cCCCCCcEEEcccCcccccCCccc---cCCCCCCEEECCCCcccccc----chhhhCCCCCCEEeccCCcCcc
Q 048080 77 TTL--GGCTSLEHLSMQDNSFTGSIPSTL---SSLKSITELDLSRNNLSGHI----PQYLENLSFLSFLNLSYNHFEG 145 (223)
Q Consensus 77 ~~~--~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~l~l~~N~l~~ 145 (223)
..+ ..+++|+.|+|.+|.++...+..+ ..+++|++|+|+.|.+.+.- +..+..+++|+.|++++|.++.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 122 247899999999998875433333 25788999999999988643 3334567899999999998764
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=1.7e-09 Score=80.50 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=86.0
Q ss_pred CCCCCCCCCeeecccC-ccccCCChhh---hhccCCceEEEccCCccccc----CCcCCCCCCCCCeEeccCcccccc--
Q 048080 5 SLGNCQNLILLTTCKN-KLSGTVPRQL---LRIITRSVLLDLFDNLLSGH----FPAEVGNLKHLVSLDISSNMFSGE-- 74 (223)
Q Consensus 5 ~~~~l~~L~~L~l~~n-~i~~~~p~~~---~~~~~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~-- 74 (223)
.+...+.|++|++++| .+...--..+ ....+.|++|+|++|.+... +...+...++|++|+|++|.|...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456789999999999 8863211222 22346789999999998743 233445568899999999999854
Q ss_pred --CCccccCCCCCcEEEc--ccCcccccC----CccccCCCCCCEEECCCCccc
Q 048080 75 --IPTTLGGCTSLEHLSM--QDNSFTGSI----PSTLSSLKSITELDLSRNNLS 120 (223)
Q Consensus 75 --~~~~~~~l~~L~~L~L--~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~ 120 (223)
+...+...++|++|+| ++|.++... ...+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455677789999999 889998542 344556689999999999986
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.61 E-value=2.5e-07 Score=76.58 Aligned_cols=115 Identities=11% Similarity=0.179 Sum_probs=77.8
Q ss_pred CCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCcccc
Q 048080 25 TVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLS 104 (223)
Q Consensus 25 ~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 104 (223)
.+....|.....|+.+.+.++... ....+|.++.+|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred EcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 455566666667777777665544 556677777777777775 3455455667777777777777654 5545566777
Q ss_pred CCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcC
Q 048080 105 SLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHF 143 (223)
Q Consensus 105 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 143 (223)
++.+|+.+.+..+ ++.+-..+|.++.+|+.+++.++..
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 7777777777544 5555566777777777777776643
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.55 E-value=7.4e-07 Score=73.24 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=96.1
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT 83 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 83 (223)
.++..+.+|+.+.+..+ +. .+....|.....|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +..+....|.++.
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred cccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 34556667777777554 33 566667777777788888766 55466677888888888888654 5546666788888
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCC
Q 048080 84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N 141 (223)
+|+.+.+.++.++.....+|.++.+|+.+++..+ ++.+-..+|.++.+|+.+.+..+
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 8888888888787666778888888888888654 66566677888888888776543
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.51 E-value=6.9e-07 Score=73.41 Aligned_cols=124 Identities=11% Similarity=0.137 Sum_probs=103.9
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCC
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCT 83 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 83 (223)
.+|.++..|+.+.+..+ +. .+....|.....++.+.+..+ +......+|.++.+|+.+.+.++.++.+...+|.++.
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 46788899999999876 66 788888988888899999765 5557778999999999999999999888888999999
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCC
Q 048080 84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 132 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 132 (223)
+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+-..+|.++..
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 9999999765 77677789999999999999765 66566677877653
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=1e-06 Score=72.89 Aligned_cols=128 Identities=12% Similarity=0.066 Sum_probs=76.5
Q ss_pred CCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCC
Q 048080 6 LGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSL 85 (223)
Q Consensus 6 ~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 85 (223)
|.++..|+.+.+..+.. .++...|.....++.+....+. .....|..+.+|+.+.+..+ ++.+...+|.++.+|
T Consensus 249 f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ccccccceeEEcCCCcc--eeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCC
Confidence 34444444444444322 3444444444444444444332 23345666777777777654 554556677777777
Q ss_pred cEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCC
Q 048080 86 EHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYN 141 (223)
Q Consensus 86 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N 141 (223)
+.+++..+ ++.....+|.++.+|+.+++..| ++.+...+|.++.+|+.+++..+
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 77777643 55555667777777777777666 66566667777777777776543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.42 E-value=7.4e-07 Score=73.74 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=87.1
Q ss_pred CCCCCCCCCCeeecccCccccCCChhhhhccCCceEEEccCCcccccCCcCCCCCCCCCeEeccCccc------------
Q 048080 4 PSLGNCQNLILLTTCKNKLSGTVPRQLLRIITRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNMF------------ 71 (223)
Q Consensus 4 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------ 71 (223)
.+|.++++|+.+.+.. .++ .+++..|.....|+.+++.++ +..+...+|.++.+|+.+.+..+-.
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence 4688899999999975 476 888888888888899999765 5556677888888887776654311
Q ss_pred ---------cccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccC
Q 048080 72 ---------SGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSY 140 (223)
Q Consensus 72 ---------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~ 140 (223)
..+...+|.++.+|+.+.+.++-.+ ....+|.++.+|+.+++..| ++.+...+|..+..|+.+.+..
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 1122345666677777777654332 55566667777777777655 4434455566666666555444
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.36 E-value=3.1e-06 Score=69.98 Aligned_cols=89 Identities=11% Similarity=0.171 Sum_probs=53.9
Q ss_pred cCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCCccccccchhhhC
Q 048080 50 HFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 129 (223)
Q Consensus 50 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 129 (223)
....+|.++.+|+.+.+..+... +...+|.++..|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+...+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 44556666667777766554332 555566666777776664 3444455556666667777776643 44455566666
Q ss_pred CCCCCEEeccCC
Q 048080 130 LSFLSFLNLSYN 141 (223)
Q Consensus 130 l~~L~~l~l~~N 141 (223)
+.+|+.+.+..+
T Consensus 333 C~~L~~i~ip~s 344 (394)
T 4gt6_A 333 CEQLERIAIPSS 344 (394)
T ss_dssp CTTCCEEEECTT
T ss_pred CCCCCEEEECcc
Confidence 677777666443
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.34 E-value=8.3e-07 Score=61.98 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=59.5
Q ss_pred cEEEcccCccc-ccCCccccCCCCCCEEECCCCccccccchhhhCCCCCCEEeccCCcCcccCCchhhhcCCcce--eec
Q 048080 86 EHLSMQDNSFT-GSIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLSFLNLSYNHFEGKVPIEAIFNSTKGI--SLV 162 (223)
Q Consensus 86 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~l~~l--~~~ 162 (223)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|++++|++.|.+...++...+... ...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~ 88 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAP 88 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccccc
Confidence 46778888876 24454332 36899999999999777788899999999999999999988765443332221 112
Q ss_pred CCCCCCCCCCCC
Q 048080 163 GNENLCGGSRKS 174 (223)
Q Consensus 163 ~n~~~C~~~~~~ 174 (223)
.....|..+...
T Consensus 89 ~~~~~C~~P~~l 100 (130)
T 3rfe_A 89 YRDLRCVAPPAL 100 (130)
T ss_dssp GTTCBCCBSTTT
T ss_pred ccCcEeCcChHH
Confidence 334567665443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=2.7e-07 Score=67.70 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=56.3
Q ss_pred CCCCeEeccCccccccCCccccCCCCCcEEEcccCc-ccccCCccccCC----CCCCEEECCCCc-cccccchhhhCCCC
Q 048080 59 KHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDNS-FTGSIPSTLSSL----KSITELDLSRNN-LSGHIPQYLENLSF 132 (223)
Q Consensus 59 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~ 132 (223)
.+|+.||++++.++...-..+.++++|+.|+|+++. ++..--..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777777765555556777788888888774 554333334443 368888888764 76554455677788
Q ss_pred CCEEeccCCc
Q 048080 133 LSFLNLSYNH 142 (223)
Q Consensus 133 L~~l~l~~N~ 142 (223)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888765
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=5.5e-07 Score=66.02 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=66.8
Q ss_pred CCceEEEccCCcccccCCcCCCCCCCCCeEeccCcc-ccccCCccccCC----CCCcEEEcccCc-ccccCCccccCCCC
Q 048080 35 TRSVLLDLFDNLLSGHFPAEVGNLKHLVSLDISSNM-FSGEIPTTLGGC----TSLEHLSMQDNS-FTGSIPSTLSSLKS 108 (223)
Q Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~~~~~~~l~~ 108 (223)
..|+.||++++.++..--..+.++++|++|+|++|. ++...-..+..+ ++|+.|+++++. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356999999999876555567899999999999995 665444445554 479999999984 87654456788999
Q ss_pred CCEEECCCCc-cc
Q 048080 109 ITELDLSRNN-LS 120 (223)
Q Consensus 109 L~~L~L~~N~-l~ 120 (223)
|++|+++++. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999875 54
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.65 E-value=2.1e-05 Score=58.66 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=40.3
Q ss_pred CCCCeEeccCc-ccccc----CCccccCCCCCcEEEcccCcccccCC----ccccCCCCCCEEECCCCccccc----cch
Q 048080 59 KHLVSLDISSN-MFSGE----IPTTLGGCTSLEHLSMQDNSFTGSIP----STLSSLKSITELDLSRNNLSGH----IPQ 125 (223)
Q Consensus 59 ~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~----~p~ 125 (223)
+.|++|+|++| .|... +.+.+..-..|+.|+|++|.+...-. +++..-+.|++|+|++|.|... +-.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45555555553 44321 11223333556666666666553222 2223335566666666666532 223
Q ss_pred hhhCCCCCCEEeccCC
Q 048080 126 YLENLSFLSFLNLSYN 141 (223)
Q Consensus 126 ~~~~l~~L~~l~l~~N 141 (223)
++..-..|+.|++++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3444455666666543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.64 E-value=0.00012 Score=50.95 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCcEEEcccCcccccCCccccCCCCCCEEECCCCccc
Q 048080 84 SLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRNNLS 120 (223)
Q Consensus 84 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (223)
+|+.|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666666666555555566666666666666553
No 164
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=97.24 E-value=0.00062 Score=37.32 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=4.0
Q ss_pred HHHHHhccCc
Q 048080 199 VVYGRRRRST 208 (223)
Q Consensus 199 ~~~~~~~~~~ 208 (223)
++|+|||+.+
T Consensus 32 ~~~~RRr~~~ 41 (44)
T 2ks1_B 32 GLFMRRRHIV 41 (44)
T ss_dssp HHHHHTTTCC
T ss_pred HHHhhhhHhh
Confidence 3344444333
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.13 E-value=0.00023 Score=53.04 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=75.0
Q ss_pred cCCceEEEccCC-ccccc----CCcCCCCCCCCCeEeccCccccccCCcc----ccCCCCCcEEEcccCcccccC----C
Q 048080 34 ITRSVLLDLFDN-LLSGH----FPAEVGNLKHLVSLDISSNMFSGEIPTT----LGGCTSLEHLSMQDNSFTGSI----P 100 (223)
Q Consensus 34 ~~~l~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~----~ 100 (223)
-+.|++|+|++| .|... +...+..-+.|+.|+|++|.+....... +..-..|+.|+|++|.|+..- .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 456799999985 76532 2344556678999999999998543333 334578999999999998532 2
Q ss_pred ccccCCCCCCEEECCCC---ccccc----cchhhhCCCCCCEEeccCCc
Q 048080 101 STLSSLKSITELDLSRN---NLSGH----IPQYLENLSFLSFLNLSYNH 142 (223)
Q Consensus 101 ~~~~~l~~L~~L~L~~N---~l~~~----~p~~~~~l~~L~~l~l~~N~ 142 (223)
+++..-+.|+.|+|++| .+... +...+..-+.|+.|+++.|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 34555677999999865 33322 34456666778888876543
No 166
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=96.77 E-value=0.0017 Score=35.40 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=3.9
Q ss_pred HHHHHhccCc
Q 048080 199 VVYGRRRRST 208 (223)
Q Consensus 199 ~~~~~~~~~~ 208 (223)
++|.|||+.+
T Consensus 32 ~~~~RRR~~~ 41 (44)
T 2jwa_A 32 GILIKRRQQK 41 (44)
T ss_dssp HHHHHHHCSC
T ss_pred Hhheehhhhh
Confidence 3334444333
No 167
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=96.41 E-value=0.0049 Score=33.66 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=4.0
Q ss_pred HHHHHhccCc
Q 048080 199 VVYGRRRRST 208 (223)
Q Consensus 199 ~~~~~~~~~~ 208 (223)
++|+|||+.+
T Consensus 31 ~~~~RRRr~~ 40 (44)
T 2l2t_A 31 AVYVRRKSIK 40 (44)
T ss_dssp HHHHHTTCSS
T ss_pred HHHhhhhhhh
Confidence 3344444433
No 168
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=95.23 E-value=0.016 Score=31.58 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhccC
Q 048080 194 VVFFIVVYGRRRRS 207 (223)
Q Consensus 194 ~~~~~~~~~~~~~~ 207 (223)
++++++..++.+++
T Consensus 30 ~~~~~~RRR~~~~k 43 (44)
T 2jwa_A 30 VFGILIKRRQQKIR 43 (44)
T ss_dssp HHHHHHHHHCSCCC
T ss_pred HHHhheehhhhhcc
Confidence 33565555555444
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.96 E-value=2.3 Score=27.50 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=28.2
Q ss_pred cccccCCcCCCCCCCCCeEeccCccccccCCccccCCCCCcEEEcccC
Q 048080 46 LLSGHFPAEVGNLKHLVSLDISSNMFSGEIPTTLGGCTSLEHLSMQDN 93 (223)
Q Consensus 46 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 93 (223)
.++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344445566666777777766654 44455566666666666666543
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=79.40 E-value=0.7 Score=23.69 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=3.2
Q ss_pred HHHHHhc
Q 048080 199 VVYGRRR 205 (223)
Q Consensus 199 ~~~~~~~ 205 (223)
.+|+|||
T Consensus 28 ~~~iRRr 34 (35)
T 1iij_A 28 GILIKRR 34 (35)
T ss_dssp THHHHHC
T ss_pred heEEeec
Confidence 3444544
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.88 E-value=6.6 Score=25.22 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=33.2
Q ss_pred ccccccCCccccCCCCCcEEEcccCcccccCCccccCCCCCCEEECCCC
Q 048080 69 NMFSGEIPTTLGGCTSLEHLSMQDNSFTGSIPSTLSSLKSITELDLSRN 117 (223)
Q Consensus 69 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 117 (223)
..++.+...+|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455566677888888888887764 44455667777888887777653
No 172
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=68.93 E-value=9 Score=20.64 Aligned_cols=15 Identities=7% Similarity=0.002 Sum_probs=7.2
Q ss_pred HHHHHHHhccCcccc
Q 048080 197 FIVVYGRRRRSTQKS 211 (223)
Q Consensus 197 ~~~~~~~~~~~~~~~ 211 (223)
+...++.-.|+++.+
T Consensus 26 i~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 26 VGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhhhhhhh
Confidence 334555555554444
No 173
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=68.66 E-value=8.1 Score=21.83 Aligned_cols=34 Identities=6% Similarity=0.097 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCccccccccc
Q 048080 183 VIQVIVLCLILVVFFIVVYGRRRRSTQKSSNKLS 216 (223)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (223)
++++++.++++++++++.|..---+++++.+.+.
T Consensus 13 i~svl~GLLLL~Lii~~LwK~GFFKR~~~~~~~~ 46 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWKIGFFKRPLKKKMEK 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccCCCcchhhH
Confidence 3344444444444444444444444544443333
No 174
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=66.78 E-value=7.3 Score=21.01 Aligned_cols=14 Identities=14% Similarity=-0.024 Sum_probs=6.8
Q ss_pred HHHHHHhccCcccc
Q 048080 198 IVVYGRRRRSTQKS 211 (223)
Q Consensus 198 ~~~~~~~~~~~~~~ 211 (223)
...++.-.|+++.+
T Consensus 28 ~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 28 ALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHhhhhHhh
Confidence 34555555554443
No 175
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=65.60 E-value=0.59 Score=28.97 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 048080 183 VIQVIVL 189 (223)
Q Consensus 183 ~~~~~~~ 189 (223)
+.++++.
T Consensus 14 v~gvi~g 20 (79)
T 2knc_B 14 LLSVMGA 20 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 176
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=64.29 E-value=14 Score=24.79 Aligned_cols=6 Identities=0% Similarity=0.158 Sum_probs=2.4
Q ss_pred ccccCC
Q 048080 217 MEQQYP 222 (223)
Q Consensus 217 ~~~~~~ 222 (223)
.++.|+
T Consensus 92 e~d~W~ 97 (138)
T 2k21_A 92 ESDAWQ 97 (138)
T ss_dssp CTTTCC
T ss_pred HHHHHH
Confidence 344343
No 177
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=58.76 E-value=2 Score=33.98 Aligned_cols=6 Identities=33% Similarity=0.805 Sum_probs=0.0
Q ss_pred HHHHHh
Q 048080 199 VVYGRR 204 (223)
Q Consensus 199 ~~~~~~ 204 (223)
++++||
T Consensus 303 ~~~~~~ 308 (315)
T 1cd1_A 303 YIWRRR 308 (315)
T ss_dssp ------
T ss_pred hheehh
Confidence 333333
No 178
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=54.54 E-value=13 Score=22.82 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=6.4
Q ss_pred eehhHHHHHHHHHHHH
Q 048080 180 IKVVIQVIVLCLILVV 195 (223)
Q Consensus 180 ~~~~~~~~~~~~~~~~ 195 (223)
.+++.+++.+.+++++
T Consensus 15 ~gvi~gilliGlllll 30 (79)
T 2knc_B 15 LSVMGAILLIGLAALL 30 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444333333
No 179
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=51.62 E-value=26 Score=19.74 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCccc
Q 048080 183 VIQVIVLCLILVVFFIVVYGRRRRSTQK 210 (223)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (223)
++++++.+++++++++..|..---++++
T Consensus 16 i~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 3334444444444444444333333333
No 180
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=43.96 E-value=50 Score=19.71 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhccCcccccc
Q 048080 194 VVFFIVVYGRRRRSTQKSSN 213 (223)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~ 213 (223)
+..++++.+..|-...+..+
T Consensus 31 i~gcwcylrlqri~qsedee 50 (90)
T 1zza_A 31 ILGCWCYLRLQRISQSEDEE 50 (90)
T ss_dssp HHHHHTTTSSCSSCSSCCCT
T ss_pred HHHHHHHHHHHHHhccccch
Confidence 33556776666655554433
No 181
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=42.57 E-value=52 Score=19.53 Aligned_cols=8 Identities=0% Similarity=0.131 Sum_probs=3.1
Q ss_pred HhccCccc
Q 048080 203 RRRRSTQK 210 (223)
Q Consensus 203 ~~~~~~~~ 210 (223)
+.+++++.
T Consensus 43 k~~qk~r~ 50 (72)
T 2jo1_A 43 KFNQQQRT 50 (72)
T ss_dssp HHCTTTSS
T ss_pred CCCCCCCC
Confidence 33333443
No 182
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=41.04 E-value=30 Score=16.32 Aligned_cols=7 Identities=14% Similarity=0.491 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 048080 183 VIQVIVL 189 (223)
Q Consensus 183 ~~~~~~~ 189 (223)
+.+.+++
T Consensus 9 iaglval 15 (32)
T 2lx0_A 9 IAGLVAL 15 (32)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
Done!