Query 048083
Match_columns 692
No_of_seqs 335 out of 3843
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-71 3.2E-76 619.1 30.2 597 2-642 178-843 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.8E-59 1.3E-63 547.8 38.4 606 2-664 206-905 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.1E-36 8.8E-41 304.4 6.1 228 2-237 18-283 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.3E-25 2.7E-30 266.0 14.4 292 362-663 139-463 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.6E-25 3.4E-30 265.1 15.0 337 302-662 69-438 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.6E-26 5.6E-31 232.3 -4.9 318 300-642 53-376 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 1.3E-25 2.9E-30 227.2 -2.2 314 327-664 53-374 (1255)
8 KOG4194 Membrane glycoprotein 99.9 1.2E-24 2.6E-29 219.0 4.4 343 327-690 123-483 (873)
9 KOG4194 Membrane glycoprotein 99.9 5.6E-23 1.2E-27 207.0 3.2 315 325-663 98-427 (873)
10 PLN03210 Resistant to P. syrin 99.8 5.9E-20 1.3E-24 217.7 17.0 292 328-642 588-907 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 1.1E-22 2.3E-27 196.4 -7.4 291 361-667 112-543 (565)
12 KOG0472 Leucine-rich repeat pr 99.8 1.2E-20 2.6E-25 182.2 -5.9 243 327-591 66-309 (565)
13 KOG0618 Serine/threonine phosp 99.7 1.5E-18 3.1E-23 184.8 -3.3 134 524-663 302-487 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 1.5E-15 3.4E-20 167.2 12.4 254 363-663 201-456 (788)
15 KOG0618 Serine/threonine phosp 99.6 1.9E-17 4.2E-22 176.4 -3.7 269 361-642 217-490 (1081)
16 PRK15387 E3 ubiquitin-protein 99.5 1.7E-14 3.6E-19 159.1 10.4 241 364-647 223-465 (788)
17 KOG0617 Ras suppressor protein 99.5 2.9E-16 6.4E-21 134.6 -3.8 151 327-492 31-183 (264)
18 KOG4658 Apoptotic ATPase [Sign 99.5 4.3E-14 9.4E-19 159.4 10.0 317 327-662 521-856 (889)
19 PRK15370 E3 ubiquitin-protein 99.5 5.3E-14 1.2E-18 156.2 9.9 226 328-592 198-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.5 4.5E-14 9.7E-19 156.8 7.9 79 365-450 180-258 (754)
21 KOG0617 Ras suppressor protein 99.5 1.8E-15 3.9E-20 129.8 -2.6 158 353-521 26-186 (264)
22 KOG4237 Extracellular matrix p 99.3 3.5E-13 7.6E-18 131.0 1.2 232 350-591 80-358 (498)
23 KOG4237 Extracellular matrix p 99.3 1.4E-13 3.1E-18 133.7 -2.8 249 301-567 66-358 (498)
24 cd00116 LRR_RI Leucine-rich re 99.3 2.2E-13 4.8E-18 140.4 -1.9 90 354-446 16-121 (319)
25 cd00116 LRR_RI Leucine-rich re 99.3 1.4E-12 3E-17 134.5 2.0 259 326-613 20-316 (319)
26 PRK04841 transcriptional regul 99.1 5.2E-09 1.1E-13 123.9 20.3 249 2-286 31-333 (903)
27 KOG3207 Beta-tubulin folding c 99.0 1E-10 2.2E-15 115.8 0.6 165 377-568 112-284 (505)
28 TIGR03015 pepcterm_ATPase puta 98.9 2.5E-08 5.5E-13 99.8 16.0 161 4-177 44-242 (269)
29 KOG0532 Leucine-rich repeat (L 98.9 1.3E-10 2.8E-15 118.6 -1.6 193 362-565 74-270 (722)
30 PRK00411 cdc6 cell division co 98.9 1.1E-07 2.5E-12 100.8 18.5 264 4-274 56-374 (394)
31 PF14580 LRR_9: Leucine-rich r 98.8 2.6E-09 5.5E-14 96.9 3.8 81 363-446 19-101 (175)
32 KOG2120 SCF ubiquitin ligase, 98.8 1.6E-10 3.5E-15 108.5 -4.2 178 411-614 186-373 (419)
33 KOG4341 F-box protein containi 98.8 3.2E-10 6.9E-15 111.7 -3.4 284 364-672 139-446 (483)
34 PF14580 LRR_9: Leucine-rich r 98.8 4.4E-09 9.6E-14 95.3 4.2 130 327-469 17-153 (175)
35 KOG3207 Beta-tubulin folding c 98.8 2.8E-09 6.1E-14 105.7 2.0 201 429-637 117-335 (505)
36 COG4886 Leucine-rich repeat (L 98.7 6E-09 1.3E-13 110.6 4.6 172 360-541 113-286 (394)
37 KOG1909 Ran GTPase-activating 98.7 7.7E-10 1.7E-14 106.7 -2.2 223 353-592 22-283 (382)
38 TIGR02928 orc1/cdc6 family rep 98.7 7.1E-07 1.5E-11 93.7 19.1 250 4-261 41-351 (365)
39 KOG0532 Leucine-rich repeat (L 98.7 5.6E-10 1.2E-14 114.0 -4.2 150 360-519 95-245 (722)
40 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.2E-13 107.7 6.2 191 367-592 97-290 (394)
41 KOG1259 Nischarin, modulator o 98.7 6.2E-09 1.3E-13 98.1 1.5 130 477-615 279-410 (490)
42 PF13401 AAA_22: AAA domain; P 98.6 8.2E-08 1.8E-12 84.4 6.9 90 3-96 4-99 (131)
43 KOG1259 Nischarin, modulator o 98.6 1.3E-08 2.8E-13 96.0 1.1 174 360-542 211-409 (490)
44 KOG2120 SCF ubiquitin ligase, 98.6 1.6E-09 3.5E-14 102.0 -5.6 60 602-662 311-373 (419)
45 COG2909 MalT ATP-dependent tra 98.5 8.4E-07 1.8E-11 96.1 13.4 254 2-287 36-340 (894)
46 TIGR00635 ruvB Holliday juncti 98.5 3.9E-06 8.4E-11 85.7 17.0 228 4-260 31-289 (305)
47 PF13855 LRR_8: Leucine rich r 98.5 8.8E-08 1.9E-12 71.1 3.5 58 364-421 2-60 (61)
48 cd01128 rho_factor Transcripti 98.5 1.9E-07 4.1E-12 90.4 6.3 91 4-95 17-114 (249)
49 PRK00080 ruvB Holliday junctio 98.5 5.6E-06 1.2E-10 85.0 16.7 229 4-261 52-311 (328)
50 PF05729 NACHT: NACHT domain 98.4 5.6E-07 1.2E-11 82.8 8.0 122 4-133 1-163 (166)
51 KOG1909 Ran GTPase-activating 98.4 2.1E-08 4.6E-13 97.0 -3.1 240 406-663 26-309 (382)
52 PRK09376 rho transcription ter 98.4 4E-07 8.6E-12 91.7 5.7 92 4-96 170-268 (416)
53 COG3903 Predicted ATPase [Gene 98.4 7.2E-07 1.6E-11 89.2 7.0 263 3-286 14-315 (414)
54 KOG0531 Protein phosphatase 1, 98.3 7.4E-08 1.6E-12 102.5 -0.6 84 360-446 92-175 (414)
55 KOG4341 F-box protein containi 98.3 2.1E-08 4.5E-13 99.1 -4.7 295 329-657 138-457 (483)
56 PF13855 LRR_8: Leucine rich r 98.3 5.7E-07 1.2E-11 66.7 3.7 59 387-445 1-61 (61)
57 PF01637 Arch_ATPase: Archaeal 98.2 3.4E-06 7.5E-11 82.4 8.8 158 3-172 20-233 (234)
58 TIGR00767 rho transcription te 98.2 3.1E-06 6.7E-11 85.9 7.3 92 4-96 169-267 (415)
59 KOG2982 Uncharacterized conser 98.1 4.1E-06 8.9E-11 79.5 6.4 183 360-591 68-261 (418)
60 PLN03150 hypothetical protein; 98.1 3.1E-06 6.8E-11 94.3 6.6 90 364-454 419-512 (623)
61 PLN03150 hypothetical protein; 98.1 5.7E-06 1.2E-10 92.3 6.7 106 330-446 419-528 (623)
62 KOG0531 Protein phosphatase 1, 98.0 1E-06 2.3E-11 93.7 -0.1 192 363-567 72-267 (414)
63 PF12799 LRR_4: Leucine Rich r 97.9 7.3E-06 1.6E-10 55.5 2.7 37 388-424 2-38 (44)
64 COG2256 MGS1 ATPase related to 97.9 6.4E-05 1.4E-09 75.1 10.2 103 3-132 48-175 (436)
65 PRK15386 type III secretion pr 97.9 4.1E-05 8.9E-10 78.3 8.9 53 509-565 157-210 (426)
66 PTZ00112 origin recognition co 97.9 0.00032 6.9E-09 77.4 15.6 249 4-261 782-1087(1164)
67 KOG2982 Uncharacterized conser 97.9 2.6E-06 5.5E-11 80.8 -0.2 222 364-634 46-285 (418)
68 PF13173 AAA_14: AAA domain 97.9 1.9E-05 4E-10 68.8 5.0 78 2-101 1-78 (128)
69 cd00009 AAA The AAA+ (ATPases 97.8 5.3E-05 1.2E-09 67.8 7.4 78 3-96 19-96 (151)
70 KOG1859 Leucine-rich repeat pr 97.8 1E-06 2.3E-11 93.1 -4.8 120 465-591 170-291 (1096)
71 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.8E-10 53.6 2.7 41 363-404 1-41 (44)
72 PRK15386 type III secretion pr 97.8 9.5E-05 2.1E-09 75.7 8.7 51 508-565 52-104 (426)
73 PRK13342 recombination factor 97.7 0.00015 3.2E-09 77.0 9.9 135 4-172 37-195 (413)
74 smart00382 AAA ATPases associa 97.7 0.00012 2.7E-09 64.9 7.2 88 4-97 3-91 (148)
75 KOG3665 ZYG-1-like serine/thre 97.6 2.1E-05 4.5E-10 87.5 2.1 90 351-442 110-204 (699)
76 PF13191 AAA_16: AAA ATPase do 97.6 0.00015 3.2E-09 67.9 7.5 28 3-32 24-51 (185)
77 KOG4579 Leucine-rich repeat (L 97.6 6.9E-06 1.5E-10 68.9 -1.4 90 360-449 50-139 (177)
78 PF04665 Pox_A32: Poxvirus A32 97.6 9.7E-05 2.1E-09 70.4 6.0 35 5-41 15-49 (241)
79 COG5238 RNA1 Ran GTPase-activa 97.6 1.4E-05 3E-10 75.0 0.3 218 360-596 27-289 (388)
80 PRK08118 topology modulation p 97.6 3.8E-05 8.2E-10 70.1 3.1 35 4-38 2-37 (167)
81 COG1474 CDC6 Cdc6-related prot 97.6 0.0002 4.4E-09 73.6 8.6 87 6-96 45-135 (366)
82 KOG4579 Leucine-rich repeat (L 97.5 2.8E-05 6.1E-10 65.3 1.1 110 363-475 27-139 (177)
83 COG3899 Predicted ATPase [Gene 97.5 0.0016 3.4E-08 75.0 15.2 151 113-283 212-384 (849)
84 PF00004 AAA: ATPase family as 97.5 0.00012 2.6E-09 64.2 4.8 21 6-26 1-21 (132)
85 PRK06893 DNA replication initi 97.5 0.00041 8.8E-09 67.1 8.9 37 4-42 40-76 (229)
86 KOG3665 ZYG-1-like serine/thre 97.5 0.00011 2.3E-09 82.0 4.9 110 326-446 145-263 (699)
87 KOG1859 Leucine-rich repeat pr 97.4 2E-05 4.3E-10 83.7 -1.7 125 435-569 166-293 (1096)
88 PF05496 RuvB_N: Holliday junc 97.4 0.00095 2.1E-08 62.3 9.4 148 4-168 51-216 (233)
89 KOG2543 Origin recognition com 97.4 0.0015 3.2E-08 65.0 11.1 123 5-132 32-192 (438)
90 PRK11331 5-methylcytosine-spec 97.4 0.00024 5.1E-09 73.7 5.3 89 4-97 195-285 (459)
91 PRK12608 transcription termina 97.3 0.00077 1.7E-08 68.3 8.3 91 4-96 134-232 (380)
92 PF14516 AAA_35: AAA-like doma 97.3 0.0034 7.3E-08 64.4 13.2 160 4-181 32-247 (331)
93 PRK07261 topology modulation p 97.3 0.00065 1.4E-08 62.3 6.7 23 5-27 2-24 (171)
94 PRK13341 recombination factor 97.2 0.00096 2.1E-08 74.8 9.0 29 3-33 52-80 (725)
95 PRK08116 hypothetical protein; 97.2 0.00093 2E-08 66.0 7.9 74 5-95 116-189 (268)
96 KOG2028 ATPase related to the 97.2 0.0012 2.7E-08 64.8 8.3 110 2-132 161-293 (554)
97 KOG1644 U2-associated snRNP A' 97.2 0.00047 1E-08 62.3 4.8 123 366-492 22-150 (233)
98 PF13207 AAA_17: AAA domain; P 97.2 0.00025 5.4E-09 61.1 3.0 22 5-26 1-22 (121)
99 KOG1947 Leucine rich repeat pr 97.2 3E-05 6.4E-10 85.0 -3.7 237 385-666 186-441 (482)
100 COG1618 Predicted nucleotide k 97.1 0.00047 1E-08 59.9 3.4 33 5-39 7-40 (179)
101 PF05621 TniB: Bacterial TniB 97.0 0.0022 4.8E-08 62.8 8.1 90 3-96 61-157 (302)
102 TIGR01242 26Sp45 26S proteasom 97.0 0.0026 5.6E-08 66.5 9.3 23 4-26 157-179 (364)
103 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0023 5.1E-08 62.0 8.5 37 4-42 39-75 (226)
104 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0017 3.7E-08 63.3 7.3 90 4-95 70-174 (274)
105 TIGR02237 recomb_radB DNA repa 97.0 0.0029 6.2E-08 60.5 8.8 45 4-51 13-57 (209)
106 PRK12377 putative replication 97.0 0.0014 3.1E-08 63.5 6.6 36 4-41 102-137 (248)
107 PRK09361 radB DNA repair and r 97.0 0.0014 3E-08 63.5 6.7 87 4-94 24-117 (225)
108 PF00448 SRP54: SRP54-type pro 97.0 0.0016 3.5E-08 60.9 6.8 88 4-93 2-92 (196)
109 PF00308 Bac_DnaA: Bacterial d 97.0 0.0066 1.4E-07 58.2 11.1 35 4-40 35-71 (219)
110 PRK05541 adenylylsulfate kinas 97.0 0.00099 2.1E-08 61.7 5.4 35 4-40 8-42 (176)
111 COG3267 ExeA Type II secretory 97.0 0.0031 6.6E-08 59.6 8.4 159 4-174 52-246 (269)
112 cd01393 recA_like RecA is a b 97.0 0.003 6.5E-08 61.2 8.8 89 4-95 20-125 (226)
113 PRK14087 dnaA chromosomal repl 97.0 0.01 2.2E-07 63.4 13.4 145 5-174 143-320 (450)
114 TIGR00678 holB DNA polymerase 97.0 0.0031 6.8E-08 59.0 8.3 23 4-26 15-37 (188)
115 PRK08084 DNA replication initi 96.9 0.0042 9.1E-08 60.3 9.1 37 4-42 46-82 (235)
116 PRK14961 DNA polymerase III su 96.9 0.0046 1E-07 64.4 9.7 23 5-27 40-62 (363)
117 KOG1947 Leucine rich repeat pr 96.9 0.00012 2.6E-09 80.2 -2.4 237 360-642 185-441 (482)
118 PTZ00202 tuzin; Provisional 96.9 0.003 6.6E-08 64.7 7.7 76 4-91 287-368 (550)
119 PRK14949 DNA polymerase III su 96.9 0.0039 8.4E-08 70.1 9.3 49 114-173 172-221 (944)
120 PLN00020 ribulose bisphosphate 96.9 0.0021 4.5E-08 64.6 6.4 23 4-26 149-171 (413)
121 PLN03025 replication factor C 96.8 0.0066 1.4E-07 62.1 10.1 24 3-26 34-57 (319)
122 cd01394 radB RadB. The archaea 96.8 0.0052 1.1E-07 59.2 8.7 40 4-45 20-59 (218)
123 PRK06645 DNA polymerase III su 96.8 0.0048 1E-07 66.3 9.1 23 5-27 45-67 (507)
124 PRK14963 DNA polymerase III su 96.8 0.0046 9.9E-08 66.8 9.0 147 5-168 38-212 (504)
125 KOG0744 AAA+-type ATPase [Post 96.8 0.0029 6.3E-08 61.4 6.5 80 4-95 178-261 (423)
126 PF01695 IstB_IS21: IstB-like 96.8 0.0018 3.9E-08 59.7 5.0 36 4-41 48-83 (178)
127 KOG0735 AAA+-type ATPase [Post 96.8 0.0026 5.7E-08 68.1 6.6 73 5-95 433-505 (952)
128 PRK08181 transposase; Validate 96.7 0.0032 6.8E-08 61.9 6.2 36 4-41 107-142 (269)
129 cd01120 RecA-like_NTPases RecA 96.7 0.0058 1.3E-07 55.6 7.6 39 5-45 1-39 (165)
130 TIGR02903 spore_lon_C ATP-depe 96.7 0.011 2.4E-07 65.7 11.1 24 4-27 176-199 (615)
131 TIGR03689 pup_AAA proteasome A 96.6 0.0028 6.1E-08 67.8 5.9 22 5-26 218-239 (512)
132 PRK08727 hypothetical protein; 96.6 0.0083 1.8E-07 58.2 8.6 36 4-41 42-77 (233)
133 TIGR02012 tigrfam_recA protein 96.6 0.0062 1.3E-07 61.2 7.7 85 4-95 56-144 (321)
134 COG4608 AppF ABC-type oligopep 96.6 0.0072 1.6E-07 58.0 7.7 88 4-94 40-137 (268)
135 PRK14957 DNA polymerase III su 96.6 0.01 2.2E-07 64.3 9.8 22 5-26 40-61 (546)
136 PRK06921 hypothetical protein; 96.6 0.0071 1.5E-07 59.7 7.9 36 4-41 118-154 (266)
137 PRK09183 transposase/IS protei 96.6 0.0049 1.1E-07 60.7 6.8 23 4-26 103-125 (259)
138 PRK06526 transposase; Provisio 96.6 0.0049 1.1E-07 60.3 6.7 24 4-27 99-122 (254)
139 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.011 2.3E-07 57.8 9.1 47 4-50 20-70 (235)
140 PRK12323 DNA polymerase III su 96.6 0.008 1.7E-07 65.3 8.7 23 5-27 40-62 (700)
141 PF13238 AAA_18: AAA domain; P 96.6 0.0015 3.2E-08 56.9 2.7 21 6-26 1-21 (129)
142 PRK07952 DNA replication prote 96.6 0.008 1.7E-07 58.2 7.9 75 4-96 100-174 (244)
143 PRK09087 hypothetical protein; 96.6 0.014 3.1E-07 56.1 9.5 23 4-26 45-67 (226)
144 PRK14088 dnaA chromosomal repl 96.5 0.0062 1.3E-07 64.9 7.7 72 5-95 132-205 (440)
145 TIGR03499 FlhF flagellar biosy 96.5 0.007 1.5E-07 60.5 7.6 87 3-93 194-281 (282)
146 KOG2123 Uncharacterized conser 96.5 0.00014 3.1E-09 68.7 -4.1 59 360-420 38-98 (388)
147 COG1484 DnaC DNA replication p 96.5 0.0059 1.3E-07 59.7 6.9 72 5-95 107-178 (254)
148 PRK14960 DNA polymerase III su 96.5 0.012 2.5E-07 64.2 9.6 24 4-27 38-61 (702)
149 PTZ00361 26 proteosome regulat 96.5 0.0033 7.2E-08 66.2 5.4 23 4-26 218-240 (438)
150 PRK08903 DnaA regulatory inact 96.5 0.0074 1.6E-07 58.5 7.5 23 4-26 43-65 (227)
151 cd00983 recA RecA is a bacter 96.5 0.0077 1.7E-07 60.6 7.6 85 4-95 56-144 (325)
152 PRK12402 replication factor C 96.5 0.011 2.3E-07 61.3 9.1 23 4-26 37-59 (337)
153 COG5238 RNA1 Ran GTPase-activa 96.5 0.00078 1.7E-08 63.6 0.4 36 384-419 27-67 (388)
154 PF00485 PRK: Phosphoribulokin 96.5 0.002 4.3E-08 60.7 3.1 22 5-26 1-22 (194)
155 cd02019 NK Nucleoside/nucleoti 96.5 0.002 4.4E-08 48.8 2.5 22 5-26 1-22 (69)
156 KOG0733 Nuclear AAA ATPase (VC 96.5 0.0059 1.3E-07 64.4 6.6 69 5-95 225-293 (802)
157 PRK14722 flhF flagellar biosyn 96.5 0.0079 1.7E-07 61.8 7.5 85 4-94 138-225 (374)
158 TIGR00064 ftsY signal recognit 96.4 0.011 2.4E-07 58.5 8.2 90 3-94 72-164 (272)
159 cd03115 SRP The signal recogni 96.4 0.0092 2E-07 55.0 7.3 22 5-26 2-23 (173)
160 PF01583 APS_kinase: Adenylyls 96.4 0.0031 6.8E-08 55.9 3.9 35 4-40 3-37 (156)
161 PRK07003 DNA polymerase III su 96.4 0.014 3E-07 64.5 9.4 49 114-173 172-221 (830)
162 PRK14962 DNA polymerase III su 96.4 0.012 2.7E-07 62.9 9.0 22 5-26 38-59 (472)
163 PTZ00301 uridine kinase; Provi 96.4 0.0041 8.8E-08 58.8 4.8 24 3-26 3-26 (210)
164 COG0572 Udk Uridine kinase [Nu 96.4 0.0059 1.3E-07 57.0 5.7 24 3-26 8-31 (218)
165 PRK04195 replication factor C 96.4 0.0073 1.6E-07 65.6 7.4 24 3-26 39-62 (482)
166 PRK09354 recA recombinase A; P 96.4 0.011 2.4E-07 59.9 7.9 85 4-95 61-149 (349)
167 PRK06835 DNA replication prote 96.4 0.0088 1.9E-07 60.7 7.2 36 4-41 184-219 (329)
168 PRK08939 primosomal protein Dn 96.4 0.009 2E-07 60.2 7.2 36 4-41 157-192 (306)
169 TIGR00362 DnaA chromosomal rep 96.4 0.009 1.9E-07 63.5 7.6 35 4-40 137-173 (405)
170 KOG2123 Uncharacterized conser 96.4 0.00039 8.4E-09 65.8 -2.4 106 360-468 16-129 (388)
171 PRK05564 DNA polymerase III su 96.4 0.022 4.8E-07 58.1 10.2 22 5-26 28-49 (313)
172 PRK00149 dnaA chromosomal repl 96.4 0.0088 1.9E-07 64.4 7.5 30 4-35 149-178 (450)
173 PRK14956 DNA polymerase III su 96.3 0.013 2.8E-07 61.9 8.4 22 5-26 42-63 (484)
174 PRK04296 thymidine kinase; Pro 96.3 0.0041 8.9E-08 58.2 4.0 86 4-94 3-88 (190)
175 COG4088 Predicted nucleotide k 96.3 0.0093 2E-07 54.2 6.0 28 4-33 2-29 (261)
176 PRK08233 hypothetical protein; 96.3 0.0033 7.1E-08 58.6 3.3 24 3-26 3-26 (182)
177 PRK06762 hypothetical protein; 96.3 0.0032 7E-08 57.6 3.2 23 4-26 3-25 (166)
178 PRK05642 DNA replication initi 96.3 0.027 5.8E-07 54.7 9.6 36 4-41 46-81 (234)
179 COG1222 RPT1 ATP-dependent 26S 96.3 0.057 1.2E-06 53.7 11.7 26 6-33 188-213 (406)
180 PRK07940 DNA polymerase III su 96.3 0.026 5.5E-07 59.0 10.0 22 5-26 38-59 (394)
181 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.018 3.9E-07 53.7 8.1 22 5-26 1-22 (183)
182 KOG1969 DNA replication checkp 96.2 0.01 2.2E-07 64.1 6.9 73 4-96 327-399 (877)
183 PRK00440 rfc replication facto 96.2 0.022 4.7E-07 58.5 9.4 24 3-26 38-61 (319)
184 PRK08691 DNA polymerase III su 96.2 0.026 5.6E-07 62.2 10.2 22 5-26 40-61 (709)
185 KOG1644 U2-associated snRNP A' 96.2 0.0072 1.6E-07 54.9 4.8 103 509-613 43-149 (233)
186 KOG2739 Leucine-rich acidic nu 96.2 0.0028 6.1E-08 60.0 2.3 82 385-468 41-125 (260)
187 KOG2739 Leucine-rich acidic nu 96.2 0.0023 4.9E-08 60.6 1.7 108 360-469 40-156 (260)
188 PRK14964 DNA polymerase III su 96.2 0.021 4.6E-07 61.0 9.1 22 5-26 37-58 (491)
189 PRK12422 chromosomal replicati 96.2 0.013 2.7E-07 62.5 7.5 35 4-40 142-176 (445)
190 PRK11889 flhF flagellar biosyn 96.2 0.02 4.3E-07 58.6 8.2 88 3-94 241-330 (436)
191 PRK10867 signal recognition pa 96.2 0.018 3.9E-07 60.6 8.3 91 3-95 100-194 (433)
192 PRK07994 DNA polymerase III su 96.2 0.019 4E-07 63.4 8.7 23 5-27 40-62 (647)
193 cd02025 PanK Pantothenate kina 96.1 0.015 3.3E-07 55.7 7.1 22 5-26 1-22 (220)
194 TIGR02881 spore_V_K stage V sp 96.1 0.01 2.2E-07 58.9 6.1 23 4-26 43-65 (261)
195 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0043 9.4E-08 58.1 3.4 25 2-26 2-26 (188)
196 PF13671 AAA_33: AAA domain; P 96.1 0.004 8.7E-08 55.3 3.0 22 5-26 1-22 (143)
197 PRK00889 adenylylsulfate kinas 96.1 0.0098 2.1E-07 55.0 5.6 24 3-26 4-27 (175)
198 cd01121 Sms Sms (bacterial rad 96.1 0.012 2.6E-07 60.9 6.8 84 4-95 83-169 (372)
199 TIGR00235 udk uridine kinase. 96.1 0.0044 9.5E-08 59.0 3.3 24 3-26 6-29 (207)
200 PRK03992 proteasome-activating 96.1 0.0097 2.1E-07 62.5 6.1 23 4-26 166-188 (389)
201 KOG0741 AAA+-type ATPase [Post 96.1 0.017 3.8E-07 59.9 7.6 79 3-102 538-616 (744)
202 TIGR03574 selen_PSTK L-seryl-t 96.1 0.012 2.6E-07 57.9 6.4 22 5-26 1-22 (249)
203 PRK05896 DNA polymerase III su 96.1 0.024 5.2E-07 61.6 9.1 22 5-26 40-61 (605)
204 PRK09112 DNA polymerase III su 96.1 0.018 4E-07 59.1 7.9 47 114-173 194-240 (351)
205 PF07726 AAA_3: ATPase family 96.1 0.0027 5.8E-08 53.7 1.4 27 6-34 2-28 (131)
206 PRK04040 adenylate kinase; Pro 96.1 0.0045 9.8E-08 57.6 3.1 23 4-26 3-25 (188)
207 PRK03839 putative kinase; Prov 96.1 0.0044 9.5E-08 57.6 3.1 22 5-26 2-23 (180)
208 PRK05480 uridine/cytidine kina 96.1 0.0052 1.1E-07 58.7 3.6 24 3-26 6-29 (209)
209 PRK12726 flagellar biosynthesi 96.0 0.024 5.2E-07 57.7 8.2 89 3-95 206-296 (407)
210 PRK06547 hypothetical protein; 96.0 0.0061 1.3E-07 55.8 3.6 25 2-26 14-38 (172)
211 PF08423 Rad51: Rad51; InterP 96.0 0.042 9.2E-07 53.9 9.5 90 4-94 39-143 (256)
212 cd02027 APSK Adenosine 5'-phos 96.0 0.011 2.4E-07 52.8 5.0 22 5-26 1-22 (149)
213 PTZ00454 26S protease regulato 96.0 0.015 3.2E-07 60.9 6.7 23 4-26 180-202 (398)
214 PRK06696 uridine kinase; Valid 96.0 0.0061 1.3E-07 58.8 3.6 24 3-26 22-45 (223)
215 PF00910 RNA_helicase: RNA hel 96.0 0.0044 9.5E-08 51.8 2.2 26 6-33 1-26 (107)
216 COG1102 Cmk Cytidylate kinase 96.0 0.019 4.1E-07 50.2 6.1 43 5-60 2-44 (179)
217 PRK14969 DNA polymerase III su 95.9 0.025 5.4E-07 61.7 8.5 22 5-26 40-61 (527)
218 COG0563 Adk Adenylate kinase a 95.9 0.011 2.4E-07 54.3 4.9 23 5-27 2-24 (178)
219 PRK00625 shikimate kinase; Pro 95.9 0.0055 1.2E-07 56.0 2.9 22 5-26 2-23 (173)
220 PRK00771 signal recognition pa 95.9 0.027 5.8E-07 59.5 8.3 90 3-95 95-186 (437)
221 PRK12724 flagellar biosynthesi 95.9 0.014 3E-07 60.4 6.0 23 4-26 224-246 (432)
222 TIGR00959 ffh signal recogniti 95.9 0.023 5.1E-07 59.7 7.6 90 3-94 99-192 (428)
223 PF13306 LRR_5: Leucine rich r 95.9 0.022 4.8E-07 49.4 6.4 106 321-441 4-111 (129)
224 PF13481 AAA_25: AAA domain; P 95.9 0.013 2.9E-07 55.1 5.3 93 4-96 33-153 (193)
225 PRK07667 uridine kinase; Provi 95.8 0.0078 1.7E-07 56.5 3.6 24 3-26 17-40 (193)
226 PRK14951 DNA polymerase III su 95.8 0.028 6.1E-07 61.9 8.2 22 5-26 40-61 (618)
227 COG0468 RecA RecA/RadA recombi 95.8 0.04 8.6E-07 54.1 8.4 90 3-95 60-152 (279)
228 COG0003 ArsA Predicted ATPase 95.8 0.012 2.5E-07 59.3 4.8 48 3-52 2-49 (322)
229 PRK14974 cell division protein 95.8 0.032 7E-07 56.7 8.0 90 3-95 140-233 (336)
230 PF00006 ATP-synt_ab: ATP synt 95.8 0.016 3.5E-07 54.8 5.4 88 4-95 16-116 (215)
231 cd02024 NRK1 Nicotinamide ribo 95.8 0.006 1.3E-07 56.4 2.5 22 5-26 1-22 (187)
232 COG1936 Predicted nucleotide k 95.8 0.0073 1.6E-07 53.5 2.9 20 5-24 2-21 (180)
233 KOG3347 Predicted nucleotide k 95.8 0.015 3.3E-07 49.9 4.5 71 5-87 9-79 (176)
234 COG2019 AdkA Archaeal adenylat 95.8 0.0092 2E-07 52.4 3.3 25 2-26 3-27 (189)
235 PRK12727 flagellar biosynthesi 95.8 0.026 5.6E-07 60.1 7.3 37 4-42 351-389 (559)
236 PRK14958 DNA polymerase III su 95.8 0.04 8.7E-07 59.7 9.1 23 5-27 40-62 (509)
237 COG1428 Deoxynucleoside kinase 95.8 0.0076 1.6E-07 55.4 3.0 24 3-26 4-27 (216)
238 PRK06217 hypothetical protein; 95.7 0.008 1.7E-07 56.0 3.3 24 4-27 2-25 (183)
239 cd02023 UMPK Uridine monophosp 95.7 0.0064 1.4E-07 57.5 2.6 22 5-26 1-22 (198)
240 PF00154 RecA: recA bacterial 95.7 0.036 7.7E-07 55.6 7.9 85 4-95 54-142 (322)
241 PRK08972 fliI flagellum-specif 95.7 0.039 8.5E-07 57.6 8.4 88 4-95 163-263 (444)
242 cd01131 PilT Pilus retraction 95.7 0.0096 2.1E-07 56.1 3.7 86 4-97 2-87 (198)
243 CHL00181 cbbX CbbX; Provisiona 95.7 0.034 7.5E-07 55.6 7.8 22 5-26 61-82 (287)
244 PRK07471 DNA polymerase III su 95.7 0.073 1.6E-06 55.1 10.4 46 114-174 194-239 (365)
245 KOG2004 Mitochondrial ATP-depe 95.7 0.011 2.5E-07 63.5 4.4 79 4-96 439-517 (906)
246 COG1066 Sms Predicted ATP-depe 95.7 0.026 5.7E-07 57.2 6.7 83 4-95 94-179 (456)
247 TIGR02322 phosphon_PhnN phosph 95.7 0.0086 1.9E-07 55.6 3.2 23 4-26 2-24 (179)
248 PRK05703 flhF flagellar biosyn 95.7 0.023 4.9E-07 60.1 6.7 86 4-93 222-308 (424)
249 cd00227 CPT Chloramphenicol (C 95.7 0.0085 1.8E-07 55.3 3.0 23 4-26 3-25 (175)
250 PF07724 AAA_2: AAA domain (Cd 95.7 0.015 3.3E-07 53.1 4.6 39 3-43 3-42 (171)
251 TIGR02880 cbbX_cfxQ probable R 95.7 0.026 5.7E-07 56.4 6.7 22 5-26 60-81 (284)
252 KOG0733 Nuclear AAA ATPase (VC 95.6 0.033 7.1E-07 59.1 7.4 68 6-95 548-615 (802)
253 PHA00729 NTP-binding motif con 95.6 0.0094 2E-07 56.3 3.3 24 3-26 17-40 (226)
254 TIGR02397 dnaX_nterm DNA polym 95.6 0.075 1.6E-06 55.5 10.5 22 5-26 38-59 (355)
255 PF08433 KTI12: Chromatin asso 95.6 0.01 2.2E-07 58.5 3.7 23 4-26 2-24 (270)
256 PRK13949 shikimate kinase; Pro 95.6 0.0094 2E-07 54.5 3.1 23 4-26 2-24 (169)
257 PRK12723 flagellar biosynthesi 95.6 0.039 8.4E-07 57.3 7.8 88 4-95 175-265 (388)
258 PRK14955 DNA polymerase III su 95.6 0.041 9E-07 58.0 8.1 23 5-27 40-62 (397)
259 PRK00131 aroK shikimate kinase 95.5 0.0094 2E-07 55.0 2.9 23 4-26 5-27 (175)
260 PF12775 AAA_7: P-loop contain 95.5 0.0066 1.4E-07 60.1 2.0 79 4-96 34-112 (272)
261 cd02021 GntK Gluconate kinase 95.5 0.0094 2E-07 53.4 2.6 22 5-26 1-22 (150)
262 cd02020 CMPK Cytidine monophos 95.4 0.0094 2E-07 53.2 2.5 22 5-26 1-22 (147)
263 PRK13947 shikimate kinase; Pro 95.4 0.011 2.5E-07 54.3 3.1 22 5-26 3-24 (171)
264 PLN03186 DNA repair protein RA 95.4 0.058 1.3E-06 55.1 8.3 55 4-59 124-182 (342)
265 TIGR02236 recomb_radA DNA repa 95.4 0.036 7.8E-07 56.5 6.9 48 4-51 96-147 (310)
266 TIGR03575 selen_PSTK_euk L-ser 95.4 0.035 7.6E-07 56.4 6.6 21 6-26 2-22 (340)
267 PRK06002 fliI flagellum-specif 95.4 0.034 7.3E-07 58.3 6.7 89 4-95 166-265 (450)
268 TIGR01241 FtsH_fam ATP-depende 95.4 0.03 6.6E-07 61.1 6.7 22 5-26 90-111 (495)
269 PHA02544 44 clamp loader, smal 95.4 0.038 8.2E-07 56.6 7.1 23 4-26 44-66 (316)
270 cd02028 UMPK_like Uridine mono 95.4 0.011 2.3E-07 54.8 2.7 22 5-26 1-22 (179)
271 TIGR03263 guanyl_kin guanylate 95.4 0.013 2.7E-07 54.5 3.2 23 4-26 2-24 (180)
272 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.072 1.6E-06 51.9 8.6 46 4-53 22-67 (237)
273 PRK08149 ATP synthase SpaL; Va 95.4 0.044 9.6E-07 57.3 7.4 88 4-95 152-252 (428)
274 KOG0729 26S proteasome regulat 95.4 0.041 8.9E-07 52.0 6.3 32 5-43 213-244 (435)
275 PF00560 LRR_1: Leucine Rich R 95.4 0.0081 1.8E-07 33.7 1.1 17 389-405 2-18 (22)
276 PF07728 AAA_5: AAA domain (dy 95.4 0.012 2.6E-07 52.0 2.8 40 6-51 2-42 (139)
277 COG3640 CooC CO dehydrogenase 95.4 0.019 4.2E-07 53.6 4.1 41 5-46 2-42 (255)
278 cd01122 GP4d_helicase GP4d_hel 95.3 0.082 1.8E-06 52.8 9.2 51 4-58 31-82 (271)
279 CHL00176 ftsH cell division pr 95.3 0.035 7.6E-07 61.7 6.9 69 5-95 218-286 (638)
280 PRK08927 fliI flagellum-specif 95.3 0.07 1.5E-06 56.0 8.7 88 4-95 159-259 (442)
281 PRK03846 adenylylsulfate kinas 95.3 0.017 3.6E-07 54.6 3.9 23 4-26 25-47 (198)
282 PRK10416 signal recognition pa 95.3 0.067 1.4E-06 54.2 8.4 24 3-26 114-137 (318)
283 PRK14970 DNA polymerase III su 95.3 0.085 1.8E-06 55.3 9.5 23 4-26 40-62 (367)
284 TIGR02239 recomb_RAD51 DNA rep 95.3 0.067 1.4E-06 54.3 8.4 55 3-58 96-154 (316)
285 cd00071 GMPK Guanosine monopho 95.3 0.013 2.9E-07 51.4 2.9 22 5-26 1-22 (137)
286 PRK14959 DNA polymerase III su 95.3 0.086 1.9E-06 57.8 9.5 52 114-176 172-224 (624)
287 TIGR00554 panK_bact pantothena 95.3 0.036 7.8E-07 55.1 6.1 23 4-26 63-85 (290)
288 PRK00279 adk adenylate kinase; 95.3 0.08 1.7E-06 50.7 8.5 22 5-26 2-23 (215)
289 TIGR00602 rad24 checkpoint pro 95.3 0.018 3.9E-07 63.5 4.4 23 4-26 111-133 (637)
290 PRK12339 2-phosphoglycerate ki 95.3 0.015 3.2E-07 54.5 3.3 24 3-26 3-26 (197)
291 PF03205 MobB: Molybdopterin g 95.3 0.015 3.2E-07 51.2 3.1 38 4-43 1-39 (140)
292 PRK05707 DNA polymerase III su 95.3 0.13 2.9E-06 52.4 10.3 23 5-27 24-46 (328)
293 PRK06067 flagellar accessory p 95.3 0.045 9.8E-07 53.2 6.8 46 4-53 26-71 (234)
294 TIGR02238 recomb_DMC1 meiotic 95.3 0.066 1.4E-06 54.1 8.0 55 4-59 97-155 (313)
295 PTZ00088 adenylate kinase 1; P 95.2 0.07 1.5E-06 51.3 7.8 21 6-26 9-29 (229)
296 PF03266 NTPase_1: NTPase; In 95.2 0.018 4E-07 52.3 3.5 21 6-26 2-22 (168)
297 PLN03187 meiotic recombination 95.2 0.075 1.6E-06 54.2 8.2 55 4-59 127-185 (344)
298 PF10662 PduV-EutP: Ethanolami 95.2 0.23 5.1E-06 43.3 10.1 25 3-27 1-25 (143)
299 COG0467 RAD55 RecA-superfamily 95.2 0.02 4.4E-07 56.7 4.1 41 3-45 23-63 (260)
300 TIGR03881 KaiC_arch_4 KaiC dom 95.2 0.094 2E-06 50.8 8.7 39 4-44 21-59 (229)
301 PRK10751 molybdopterin-guanine 95.2 0.02 4.3E-07 52.0 3.6 24 3-26 6-29 (173)
302 PRK11823 DNA repair protein Ra 95.1 0.047 1E-06 58.3 7.0 84 4-95 81-167 (446)
303 PRK09270 nucleoside triphospha 95.1 0.062 1.3E-06 52.0 7.2 24 3-26 33-56 (229)
304 PRK05057 aroK shikimate kinase 95.1 0.018 3.9E-07 52.9 3.3 24 3-26 4-27 (172)
305 PRK14721 flhF flagellar biosyn 95.1 0.078 1.7E-06 55.5 8.3 23 4-26 192-214 (420)
306 cd01135 V_A-ATPase_B V/A-type 95.1 0.058 1.3E-06 52.6 6.8 93 4-96 70-178 (276)
307 PRK14954 DNA polymerase III su 95.1 0.1 2.2E-06 57.7 9.6 23 5-27 40-62 (620)
308 PRK10463 hydrogenase nickel in 95.1 0.038 8.1E-07 54.5 5.5 30 2-33 103-132 (290)
309 PRK10078 ribose 1,5-bisphospho 95.1 0.018 3.9E-07 53.7 3.3 23 4-26 3-25 (186)
310 COG1121 ZnuC ABC-type Mn/Zn tr 95.1 0.078 1.7E-06 51.0 7.5 22 4-25 31-52 (254)
311 PF00560 LRR_1: Leucine Rich R 95.1 0.01 2.2E-07 33.2 1.0 21 411-431 1-21 (22)
312 PRK14530 adenylate kinase; Pro 95.1 0.016 3.5E-07 55.5 2.9 23 4-26 4-26 (215)
313 PRK04328 hypothetical protein; 95.1 0.084 1.8E-06 51.7 8.0 40 4-45 24-63 (249)
314 PF00625 Guanylate_kin: Guanyl 95.1 0.021 4.6E-07 53.1 3.6 36 3-40 2-37 (183)
315 PRK00300 gmk guanylate kinase; 95.1 0.017 3.8E-07 54.9 3.1 23 4-26 6-28 (205)
316 PRK14532 adenylate kinase; Pro 95.1 0.12 2.6E-06 48.3 8.7 21 6-26 3-23 (188)
317 TIGR00416 sms DNA repair prote 95.0 0.059 1.3E-06 57.6 7.4 84 4-95 95-181 (454)
318 COG1124 DppF ABC-type dipeptid 95.0 0.021 4.6E-07 53.7 3.5 23 4-26 34-56 (252)
319 cd00464 SK Shikimate kinase (S 95.0 0.016 3.6E-07 52.1 2.8 21 6-26 2-22 (154)
320 PRK14953 DNA polymerase III su 95.0 0.14 3.1E-06 55.2 10.2 22 5-26 40-61 (486)
321 cd00820 PEPCK_HprK Phosphoenol 95.0 0.022 4.8E-07 46.9 3.2 21 4-24 16-36 (107)
322 PRK12678 transcription termina 95.0 0.035 7.6E-07 59.2 5.3 87 4-95 417-514 (672)
323 PRK13948 shikimate kinase; Pro 95.0 0.019 4.2E-07 52.9 3.0 23 4-26 11-33 (182)
324 PRK14952 DNA polymerase III su 95.0 0.11 2.4E-06 57.1 9.2 22 5-26 37-58 (584)
325 PRK09111 DNA polymerase III su 94.9 0.11 2.4E-06 57.4 9.3 22 5-26 48-69 (598)
326 TIGR01313 therm_gnt_kin carboh 94.9 0.016 3.4E-07 52.8 2.3 21 6-26 1-21 (163)
327 smart00763 AAA_PrkA PrkA AAA d 94.9 0.021 4.5E-07 57.9 3.3 25 3-27 78-102 (361)
328 PRK13975 thymidylate kinase; P 94.9 0.021 4.5E-07 53.9 3.2 23 4-26 3-25 (196)
329 COG0237 CoaE Dephospho-CoA kin 94.9 0.022 4.8E-07 53.2 3.3 24 3-26 2-25 (201)
330 PRK14086 dnaA chromosomal repl 94.9 0.077 1.7E-06 57.9 7.8 34 5-40 316-351 (617)
331 COG2255 RuvB Holliday junction 94.9 0.17 3.8E-06 48.7 9.1 46 112-168 173-218 (332)
332 PF02374 ArsA_ATPase: Anion-tr 94.9 0.03 6.6E-07 56.5 4.4 46 3-50 1-46 (305)
333 PRK06995 flhF flagellar biosyn 94.9 0.079 1.7E-06 56.4 7.6 56 4-59 257-313 (484)
334 PRK13946 shikimate kinase; Pro 94.8 0.021 4.5E-07 53.2 3.0 23 4-26 11-33 (184)
335 PRK14723 flhF flagellar biosyn 94.8 0.084 1.8E-06 59.2 8.0 87 4-94 186-273 (767)
336 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.096 2.1E-06 46.4 7.1 24 4-27 27-50 (144)
337 PRK14493 putative bifunctional 94.8 0.031 6.8E-07 55.1 4.3 36 3-41 1-36 (274)
338 PF06745 KaiC: KaiC; InterPro 94.8 0.077 1.7E-06 51.3 7.0 86 4-94 20-125 (226)
339 PRK14737 gmk guanylate kinase; 94.8 0.025 5.5E-07 52.5 3.4 24 3-26 4-27 (186)
340 PRK04182 cytidylate kinase; Pr 94.8 0.022 4.8E-07 52.8 3.1 22 5-26 2-23 (180)
341 KOG0989 Replication factor C, 94.8 0.084 1.8E-06 51.4 6.8 34 3-36 57-90 (346)
342 TIGR01425 SRP54_euk signal rec 94.8 0.087 1.9E-06 55.2 7.6 37 3-41 100-136 (429)
343 KOG0473 Leucine-rich repeat pr 94.8 0.0012 2.5E-08 61.0 -5.4 86 360-446 39-124 (326)
344 cd01136 ATPase_flagellum-secre 94.7 0.077 1.7E-06 53.6 6.9 23 4-26 70-92 (326)
345 cd00984 DnaB_C DnaB helicase C 94.7 0.13 2.7E-06 50.4 8.4 49 4-56 14-63 (242)
346 TIGR00150 HI0065_YjeE ATPase, 94.7 0.027 5.8E-07 48.6 3.1 24 4-27 23-46 (133)
347 PRK06936 type III secretion sy 94.7 0.12 2.6E-06 54.2 8.4 85 4-95 163-263 (439)
348 TIGR00041 DTMP_kinase thymidyl 94.7 0.17 3.6E-06 47.7 8.9 23 4-26 4-26 (195)
349 TIGR01041 ATP_syn_B_arch ATP s 94.7 0.12 2.6E-06 54.7 8.5 92 4-95 142-249 (458)
350 TIGR02173 cyt_kin_arch cytidyl 94.7 0.025 5.4E-07 52.0 3.1 22 5-26 2-23 (171)
351 PRK14950 DNA polymerase III su 94.7 0.17 3.6E-06 56.4 10.0 22 5-26 40-61 (585)
352 PRK13768 GTPase; Provisional 94.7 0.035 7.7E-07 54.5 4.2 24 3-26 2-25 (253)
353 TIGR00176 mobB molybdopterin-g 94.7 0.023 4.9E-07 51.0 2.6 22 5-26 1-22 (155)
354 COG0529 CysC Adenylylsulfate k 94.7 0.037 8.1E-07 49.3 3.8 23 4-26 24-46 (197)
355 COG0194 Gmk Guanylate kinase [ 94.7 0.03 6.4E-07 50.6 3.3 23 4-26 5-27 (191)
356 PTZ00035 Rad51 protein; Provis 94.7 0.15 3.3E-06 52.2 8.9 54 4-58 119-176 (337)
357 COG4167 SapF ABC-type antimicr 94.7 0.069 1.5E-06 47.7 5.4 23 4-26 40-62 (267)
358 TIGR00073 hypB hydrogenase acc 94.6 0.029 6.2E-07 53.4 3.4 25 2-26 21-45 (207)
359 cd01672 TMPK Thymidine monopho 94.6 0.053 1.2E-06 51.2 5.3 23 4-26 1-23 (200)
360 PF05673 DUF815: Protein of un 94.6 0.6 1.3E-05 44.6 12.0 22 5-26 54-75 (249)
361 COG1126 GlnQ ABC-type polar am 94.6 0.028 6.2E-07 51.8 3.1 35 4-41 29-63 (240)
362 KOG0991 Replication factor C, 94.6 0.046 9.9E-07 50.8 4.4 25 2-26 47-71 (333)
363 PF08477 Miro: Miro-like prote 94.6 0.029 6.2E-07 47.9 3.0 24 5-28 1-24 (119)
364 PRK12597 F0F1 ATP synthase sub 94.6 0.15 3.3E-06 53.9 8.9 90 4-95 144-248 (461)
365 PLN02924 thymidylate kinase 94.6 0.085 1.8E-06 50.4 6.4 24 4-27 17-40 (220)
366 CHL00195 ycf46 Ycf46; Provisio 94.6 0.033 7.2E-07 59.8 4.0 23 4-26 260-282 (489)
367 PRK06305 DNA polymerase III su 94.6 0.16 3.4E-06 54.4 9.2 22 5-26 41-62 (451)
368 PRK14527 adenylate kinase; Pro 94.6 0.03 6.5E-07 52.5 3.3 24 3-26 6-29 (191)
369 COG1763 MobB Molybdopterin-gua 94.6 0.027 5.8E-07 50.3 2.8 24 3-26 2-25 (161)
370 PRK08451 DNA polymerase III su 94.6 0.21 4.5E-06 54.1 10.0 22 5-26 38-59 (535)
371 PRK09519 recA DNA recombinatio 94.5 0.11 2.3E-06 58.5 7.9 85 4-95 61-149 (790)
372 cd02022 DPCK Dephospho-coenzym 94.5 0.025 5.5E-07 52.3 2.6 21 5-25 1-21 (179)
373 PRK05439 pantothenate kinase; 94.5 0.033 7.2E-07 55.7 3.6 23 4-26 87-109 (311)
374 PRK01184 hypothetical protein; 94.5 0.028 6.1E-07 52.4 3.0 22 4-26 2-23 (184)
375 COG0703 AroK Shikimate kinase 94.5 0.028 6E-07 50.5 2.7 22 5-26 4-25 (172)
376 PF13604 AAA_30: AAA domain; P 94.5 0.084 1.8E-06 49.6 6.1 24 3-26 18-41 (196)
377 cd02117 NifH_like This family 94.5 0.029 6.3E-07 53.6 3.1 23 4-26 1-23 (212)
378 PF00005 ABC_tran: ABC transpo 94.5 0.029 6.2E-07 49.4 2.8 24 4-27 12-35 (137)
379 PRK09825 idnK D-gluconate kina 94.5 0.031 6.8E-07 51.4 3.1 24 4-27 4-27 (176)
380 PRK05922 type III secretion sy 94.5 0.068 1.5E-06 56.0 5.9 88 4-95 158-258 (434)
381 PRK09280 F0F1 ATP synthase sub 94.5 0.18 3.9E-06 53.2 9.0 90 4-95 145-249 (463)
382 KOG3864 Uncharacterized conser 94.5 0.0025 5.4E-08 57.8 -3.9 83 555-637 101-185 (221)
383 PLN02796 D-glycerate 3-kinase 94.5 0.065 1.4E-06 54.1 5.5 23 4-26 101-123 (347)
384 PRK13230 nitrogenase reductase 94.5 0.033 7.2E-07 55.8 3.6 40 3-44 1-40 (279)
385 PRK03731 aroL shikimate kinase 94.4 0.029 6.3E-07 51.5 2.9 23 4-26 3-25 (171)
386 PLN02200 adenylate kinase fami 94.4 0.032 6.9E-07 54.0 3.2 23 4-26 44-66 (234)
387 PF00406 ADK: Adenylate kinase 94.4 0.11 2.4E-06 46.5 6.6 19 8-26 1-19 (151)
388 cd01983 Fer4_NifH The Fer4_Nif 94.4 0.029 6.4E-07 45.7 2.6 22 5-26 1-22 (99)
389 PF00142 Fer4_NifH: 4Fe-4S iro 94.4 0.041 8.8E-07 52.8 3.8 40 4-45 1-40 (273)
390 PRK05800 cobU adenosylcobinami 94.4 0.12 2.7E-06 47.1 6.9 22 5-26 3-24 (170)
391 TIGR03498 FliI_clade3 flagella 94.4 0.082 1.8E-06 55.4 6.3 23 4-26 141-163 (418)
392 TIGR01287 nifH nitrogenase iro 94.4 0.032 6.8E-07 55.9 3.3 41 4-46 1-41 (275)
393 PRK06761 hypothetical protein; 94.4 0.046 1E-06 53.9 4.3 24 4-27 4-27 (282)
394 cd03223 ABCD_peroxisomal_ALDP 94.4 0.13 2.8E-06 46.9 7.0 24 4-27 28-51 (166)
395 PRK08356 hypothetical protein; 94.4 0.039 8.4E-07 52.0 3.6 22 3-24 5-26 (195)
396 TIGR03305 alt_F1F0_F1_bet alte 94.4 0.075 1.6E-06 55.9 5.9 90 4-95 139-243 (449)
397 PRK06620 hypothetical protein; 94.4 0.034 7.3E-07 53.0 3.2 23 4-26 45-67 (214)
398 PRK05973 replicative DNA helic 94.4 0.079 1.7E-06 50.9 5.6 46 4-53 65-110 (237)
399 PF13521 AAA_28: AAA domain; P 94.4 0.026 5.7E-07 51.4 2.3 22 5-26 1-22 (163)
400 TIGR03496 FliI_clade1 flagella 94.3 0.081 1.8E-06 55.4 6.1 23 4-26 138-160 (411)
401 TIGR00763 lon ATP-dependent pr 94.3 0.049 1.1E-06 62.8 5.0 23 4-26 348-370 (775)
402 TIGR01243 CDC48 AAA family ATP 94.3 0.07 1.5E-06 61.3 6.2 23 4-26 213-235 (733)
403 TIGR02639 ClpA ATP-dependent C 94.3 0.093 2E-06 60.1 7.1 21 6-26 206-226 (731)
404 cd01428 ADK Adenylate kinase ( 94.3 0.031 6.7E-07 52.6 2.8 21 6-26 2-22 (194)
405 PF03029 ATP_bind_1: Conserved 94.3 0.034 7.4E-07 53.8 3.0 32 8-41 1-32 (238)
406 PF01926 MMR_HSR1: 50S ribosom 94.2 0.04 8.6E-07 46.8 3.1 21 6-26 2-22 (116)
407 PRK08099 bifunctional DNA-bind 94.2 0.033 7.3E-07 58.3 3.1 24 3-26 219-242 (399)
408 cd01124 KaiC KaiC is a circadi 94.2 0.038 8.3E-07 51.6 3.2 37 5-43 1-37 (187)
409 KOG3354 Gluconate kinase [Carb 94.2 0.096 2.1E-06 45.4 5.2 27 5-33 14-40 (191)
410 PRK07133 DNA polymerase III su 94.2 0.28 6.1E-06 54.8 10.2 22 5-26 42-63 (725)
411 cd00544 CobU Adenosylcobinamid 94.2 0.14 3E-06 46.6 6.7 81 5-94 1-83 (169)
412 PRK13232 nifH nitrogenase redu 94.2 0.036 7.8E-07 55.4 3.2 23 4-26 2-24 (273)
413 PRK14971 DNA polymerase III su 94.2 0.2 4.4E-06 55.7 9.3 22 5-26 41-62 (614)
414 PRK14738 gmk guanylate kinase; 94.2 0.041 8.8E-07 52.2 3.4 24 3-26 13-36 (206)
415 PRK15453 phosphoribulokinase; 94.2 0.043 9.4E-07 53.6 3.5 24 3-26 5-28 (290)
416 cd03116 MobB Molybdenum is an 94.2 0.044 9.6E-07 49.3 3.4 24 3-26 1-24 (159)
417 PLN02165 adenylate isopentenyl 94.2 0.036 7.8E-07 55.7 3.0 23 4-26 44-66 (334)
418 PRK04301 radA DNA repair and r 94.2 0.075 1.6E-06 54.3 5.4 49 4-52 103-155 (317)
419 COG1120 FepC ABC-type cobalami 94.1 0.04 8.7E-07 53.2 3.2 34 4-40 29-62 (258)
420 TIGR01040 V-ATPase_V1_B V-type 94.1 0.11 2.4E-06 54.4 6.6 89 4-95 142-258 (466)
421 PRK06647 DNA polymerase III su 94.1 0.26 5.6E-06 54.2 9.8 23 5-27 40-62 (563)
422 KOG1532 GTPase XAB1, interacts 94.1 0.046 9.9E-07 52.0 3.4 30 4-35 20-49 (366)
423 COG1419 FlhF Flagellar GTP-bin 94.1 0.17 3.6E-06 51.9 7.6 87 3-93 203-290 (407)
424 PRK13695 putative NTPase; Prov 94.1 0.042 9.1E-07 50.6 3.2 22 5-26 2-23 (174)
425 TIGR02016 BchX chlorophyllide 94.1 0.05 1.1E-06 54.8 4.0 40 4-45 1-40 (296)
426 PRK07594 type III secretion sy 94.1 0.14 3E-06 53.8 7.3 88 4-95 156-256 (433)
427 PRK14948 DNA polymerase III su 94.1 0.26 5.6E-06 54.9 9.8 23 5-27 40-62 (620)
428 PF13245 AAA_19: Part of AAA d 94.1 0.047 1E-06 42.1 2.9 23 4-26 11-33 (76)
429 PRK14531 adenylate kinase; Pro 94.1 0.04 8.6E-07 51.3 3.0 23 4-26 3-25 (183)
430 COG3638 ABC-type phosphate/pho 94.1 0.075 1.6E-06 49.8 4.6 23 4-26 31-53 (258)
431 PLN02318 phosphoribulokinase/u 94.1 0.044 9.5E-07 59.0 3.6 25 2-26 64-88 (656)
432 PRK05688 fliI flagellum-specif 94.1 0.13 2.8E-06 54.1 7.0 23 4-26 169-191 (451)
433 cd02040 NifH NifH gene encodes 94.0 0.057 1.2E-06 53.9 4.3 41 3-46 1-42 (270)
434 smart00072 GuKc Guanylate kina 94.0 0.049 1.1E-06 50.7 3.5 24 3-26 2-25 (184)
435 COG0593 DnaA ATPase involved i 94.0 0.44 9.5E-06 49.4 10.6 37 3-41 113-149 (408)
436 cd04139 RalA_RalB RalA/RalB su 94.0 0.042 9.2E-07 49.8 3.0 23 5-27 2-24 (164)
437 COG1100 GTPase SAR1 and relate 94.0 0.039 8.5E-07 53.0 2.9 24 4-27 6-29 (219)
438 PRK09099 type III secretion sy 94.0 0.13 2.9E-06 54.1 6.9 23 4-26 164-186 (441)
439 PRK07196 fliI flagellum-specif 94.0 0.15 3.3E-06 53.5 7.3 23 4-26 156-178 (434)
440 cd02034 CooC The accessory pro 94.0 0.059 1.3E-06 45.6 3.6 21 6-26 2-22 (116)
441 COG0466 Lon ATP-dependent Lon 93.9 0.035 7.6E-07 60.2 2.5 79 4-96 351-429 (782)
442 PF13614 AAA_31: AAA domain; P 93.9 0.091 2E-06 47.4 5.0 41 4-46 1-42 (157)
443 cd01132 F1_ATPase_alpha F1 ATP 93.9 0.13 2.8E-06 50.3 6.2 88 4-95 70-172 (274)
444 PHA02530 pseT polynucleotide k 93.9 0.045 9.7E-07 55.6 3.3 23 4-26 3-25 (300)
445 PRK14528 adenylate kinase; Pro 93.9 0.047 1E-06 50.8 3.1 23 4-26 2-24 (186)
446 PF03308 ArgK: ArgK protein; 93.9 0.051 1.1E-06 52.0 3.3 49 3-51 29-77 (266)
447 PRK07721 fliI flagellum-specif 93.9 0.15 3.3E-06 53.9 7.2 23 4-26 159-181 (438)
448 PRK10865 protein disaggregatio 93.9 0.11 2.3E-06 60.5 6.6 23 4-26 599-621 (857)
449 PLN02348 phosphoribulokinase 93.9 0.053 1.2E-06 55.6 3.6 24 3-26 49-72 (395)
450 PLN03046 D-glycerate 3-kinase; 93.9 0.11 2.3E-06 53.7 5.7 23 4-26 213-235 (460)
451 KOG0738 AAA+-type ATPase [Post 93.9 0.2 4.4E-06 50.4 7.4 23 4-26 246-268 (491)
452 cd03238 ABC_UvrA The excision 93.8 0.052 1.1E-06 49.8 3.2 22 4-25 22-43 (176)
453 KOG2227 Pre-initiation complex 93.8 1.1 2.5E-05 46.4 12.8 87 5-95 177-267 (529)
454 CHL00095 clpC Clp protease ATP 93.8 0.096 2.1E-06 60.8 6.1 22 5-26 202-223 (821)
455 TIGR01243 CDC48 AAA family ATP 93.8 0.12 2.6E-06 59.4 6.8 22 5-26 489-510 (733)
456 PF02562 PhoH: PhoH-like prote 93.8 0.036 7.8E-07 51.8 2.1 38 3-40 19-56 (205)
457 PTZ00185 ATPase alpha subunit; 93.8 0.25 5.4E-06 52.4 8.3 89 4-95 190-300 (574)
458 PHA02575 1 deoxynucleoside mon 93.8 0.051 1.1E-06 51.0 3.0 22 5-26 2-23 (227)
459 TIGR03345 VI_ClpV1 type VI sec 93.8 0.1 2.3E-06 60.4 6.1 68 6-94 211-290 (852)
460 COG0125 Tmk Thymidylate kinase 93.8 0.15 3.3E-06 47.9 6.2 39 4-44 4-42 (208)
461 COG0464 SpoVK ATPases of the A 93.7 0.065 1.4E-06 58.7 4.3 23 4-26 277-299 (494)
462 PRK07764 DNA polymerase III su 93.7 0.3 6.5E-06 56.0 9.7 23 5-27 39-61 (824)
463 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.7 0.052 1.1E-06 52.2 3.2 23 4-26 31-53 (218)
464 PRK12338 hypothetical protein; 93.7 0.053 1.1E-06 54.3 3.2 24 4-27 5-28 (319)
465 cd03225 ABC_cobalt_CbiO_domain 93.7 0.054 1.2E-06 51.8 3.2 23 4-26 28-50 (211)
466 PRK13235 nifH nitrogenase redu 93.7 0.051 1.1E-06 54.3 3.2 23 4-26 2-24 (274)
467 COG4240 Predicted kinase [Gene 93.7 0.092 2E-06 48.7 4.4 79 4-84 51-133 (300)
468 CHL00060 atpB ATP synthase CF1 93.7 0.12 2.6E-06 54.8 5.9 90 4-95 162-273 (494)
469 COG1703 ArgK Putative periplas 93.7 0.047 1E-06 53.0 2.7 51 3-53 51-101 (323)
470 COG2842 Uncharacterized ATPase 93.7 0.21 4.5E-06 48.7 7.0 80 5-95 96-176 (297)
471 cd03229 ABC_Class3 This class 93.6 0.058 1.3E-06 49.9 3.2 23 4-26 27-49 (178)
472 cd03114 ArgK-like The function 93.6 0.066 1.4E-06 47.7 3.4 22 5-26 1-22 (148)
473 TIGR03497 FliI_clade2 flagella 93.6 0.16 3.5E-06 53.2 6.8 23 4-26 138-160 (413)
474 PRK06820 type III secretion sy 93.6 0.27 5.9E-06 51.8 8.4 23 4-26 164-186 (440)
475 TIGR01351 adk adenylate kinase 93.6 0.05 1.1E-06 51.9 2.8 21 6-26 2-22 (210)
476 cd02032 Bchl_like This family 93.6 0.071 1.5E-06 53.1 4.0 37 5-43 2-38 (267)
477 TIGR01166 cbiO cobalt transpor 93.6 0.057 1.2E-06 50.6 3.1 23 4-26 19-41 (190)
478 TIGR01039 atpD ATP synthase, F 93.6 0.2 4.3E-06 52.7 7.3 90 4-95 144-248 (461)
479 cd04119 RJL RJL (RabJ-Like) su 93.6 0.056 1.2E-06 49.2 3.1 23 5-27 2-24 (168)
480 cd02026 PRK Phosphoribulokinas 93.6 0.048 1E-06 54.1 2.7 22 5-26 1-22 (273)
481 PRK06793 fliI flagellum-specif 93.6 0.21 4.5E-06 52.5 7.4 89 4-95 157-257 (432)
482 KOG0739 AAA+-type ATPase [Post 93.6 0.27 5.9E-06 47.6 7.4 69 4-95 167-236 (439)
483 TIGR01420 pilT_fam pilus retra 93.6 0.094 2E-06 54.1 4.9 87 4-98 123-209 (343)
484 cd01862 Rab7 Rab7 subfamily. 93.6 0.058 1.3E-06 49.4 3.1 22 5-26 2-23 (172)
485 PRK02496 adk adenylate kinase; 93.5 0.062 1.3E-06 50.0 3.3 23 4-26 2-24 (184)
486 PRK13233 nifH nitrogenase redu 93.5 0.057 1.2E-06 54.0 3.2 23 4-26 3-25 (275)
487 PRK08472 fliI flagellum-specif 93.5 0.12 2.5E-06 54.3 5.5 23 4-26 158-180 (434)
488 TIGR03324 alt_F1F0_F1_al alter 93.5 0.29 6.2E-06 52.1 8.4 88 4-95 163-265 (497)
489 COG0378 HypB Ni2+-binding GTPa 93.5 0.061 1.3E-06 48.9 3.0 30 4-35 14-43 (202)
490 PRK14730 coaE dephospho-CoA ki 93.5 0.06 1.3E-06 50.5 3.1 23 4-26 2-24 (195)
491 TIGR00960 3a0501s02 Type II (G 93.5 0.058 1.3E-06 51.7 3.1 23 4-26 30-52 (216)
492 PRK13236 nitrogenase reductase 93.5 0.081 1.7E-06 53.4 4.2 25 2-26 5-29 (296)
493 PRK13231 nitrogenase reductase 93.5 0.091 2E-06 52.2 4.6 40 3-45 2-41 (264)
494 COG4639 Predicted kinase [Gene 93.5 0.13 2.9E-06 44.8 4.8 25 3-27 2-26 (168)
495 PRK08533 flagellar accessory p 93.5 0.14 3.1E-06 49.4 5.7 47 4-54 25-71 (230)
496 PF13555 AAA_29: P-loop contai 93.5 0.084 1.8E-06 38.5 3.1 20 5-24 25-44 (62)
497 KOG3864 Uncharacterized conser 93.5 0.01 2.3E-07 53.9 -2.0 78 510-587 103-184 (221)
498 smart00173 RAS Ras subfamily o 93.5 0.061 1.3E-06 48.9 3.0 22 5-26 2-23 (164)
499 PF03193 DUF258: Protein of un 93.5 0.073 1.6E-06 47.6 3.4 24 4-27 36-59 (161)
500 cd02029 PRK_like Phosphoribulo 93.5 0.053 1.2E-06 52.5 2.6 22 5-26 1-22 (277)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-71 Score=619.10 Aligned_cols=597 Identities=29% Similarity=0.403 Sum_probs=461.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccc-hhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHH
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVD-VKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTL 80 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 80 (692)
+.++|||+||||+||||||+.++|+.. ++++||.++||.||+.++...++.+|++.++..+........++....+.+.
T Consensus 178 ~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 178 DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL 257 (889)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence 347999999999999999999999998 9999999999999999999999999999998866543444457888999999
Q ss_pred hccccEEEEEeCCCCccccccc--CCCCc------------------ccccCCccccCCCCHHHHHHHHHhhcccccccc
Q 048083 81 LKEISYLIVVEDVETPQVCNPN--NIPPE------------------AEAAGPTLHLSRLNKEESWKLLLKKVPVATAAE 140 (692)
Q Consensus 81 L~~k~~LlVLDdv~~~~~~~~~--~~~~~------------------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 140 (692)
|++|||+|||||||+..+|+.+ ++|.. ++.+...++++.|+++|||+||++.+|.. .
T Consensus 258 L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~---~ 334 (889)
T KOG4658|consen 258 LEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPN---T 334 (889)
T ss_pred hccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccc---c
Confidence 9999999999999999999999 66665 24445667999999999999999999876 3
Q ss_pred CccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCC-hHHHHHHHHHhcC-----------------CCCCCCCC
Q 048083 141 SDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKE-AKYWSKVIEHADN-----------------SRSGSGTG 202 (692)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~-~~~w~~~l~~l~~-----------------~~s~~~L~ 202 (692)
. ...+.++++|++|+++|+|+|||++++|+.|+.+. .++|+++.+.+.+ ..||+.|+
T Consensus 335 ~-----~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~ 409 (889)
T KOG4658|consen 335 L-----GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP 409 (889)
T ss_pred c-----cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh
Confidence 2 22344899999999999999999999999999999 7899999998754 56999999
Q ss_pred ccchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCC-----chHHHHHHHHHHHHhccceeeeeccCCCCceEEEcChHH
Q 048083 203 SGLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAP-----IDTDLAEMYFEELVIRNLIQVTKWRLDGSPKMCRMPSAV 277 (692)
Q Consensus 203 ~~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~-----~~~~~~~~~~~~L~~~sLi~~~~~~~~~~~~~~~~h~lv 277 (692)
+++|.||+|||.||+++.|+++.++.+|+|+||+.+ ..++.|.+|+.+|++++|+...... ++...|+|||+|
T Consensus 410 ~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvv 487 (889)
T KOG4658|consen 410 EELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVV 487 (889)
T ss_pred HHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHH
Confidence 999999999999999999999999999999999965 6689999999999999999976543 567789999999
Q ss_pred HHHHHHhhh-----ccCeEeec------CcccccccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcc
Q 048083 278 YRVFSKEAE-----NAGFFHHQ------LTEQQQSLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPA 346 (692)
Q Consensus 278 ~~~~~~~~~-----~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~ 346 (692)
|++|..+++ .++..... ......+..+|+++++. . ....++... .+++|++|.+.++..
T Consensus 488 Re~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~-~--~~~~~~~~~--~~~~L~tLll~~n~~----- 557 (889)
T KOG4658|consen 488 REMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMN-N--KIEHIAGSS--ENPKLRTLLLQRNSD----- 557 (889)
T ss_pred HHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEec-c--chhhccCCC--CCCccceEEEeecch-----
Confidence 999999999 55533322 22345678899999994 3 444555555 788999999998851
Q ss_pred hhhhhHHHhhhccCCcceEEEEeecCCC-CCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCc-ccee
Q 048083 347 IEISTFLDKIISNRGLVLLTVLDLEGVY-KPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHT-KLRY 424 (692)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~-~l~~ 424 (692)
.+......+| ..|+.|++|||++|. +.++|.+ ++.+.+||||+++++.+..+|..+++|..|.+|++..+ .+..
T Consensus 558 -~l~~is~~ff--~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 558 -WLLEISGEFF--RSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred -hhhhcCHHHH--hhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccc
Confidence 1344567789 999999999999876 5699999 99999999999999999999999999999999999999 5667
Q ss_pred cChhhhccccCceeecccccccccccccCCCcccccccccccCCCccccccccccccccccc----cccccc-chhhHHH
Q 048083 425 LPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRK----LGVKCY-SQRVIDS 499 (692)
Q Consensus 425 lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~----L~l~~~-~~~~~~~ 499 (692)
+|.....|++||+|.+...........++.+.+|++|..+.+..... .....+..+..|++ +.+.++ .......
T Consensus 634 ~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~ 712 (889)
T KOG4658|consen 634 IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISS 712 (889)
T ss_pred ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecc
Confidence 77777889999999997765333333455666777776666655432 11113444555543 232222 2344455
Q ss_pred HHHHhhccCCcceEEeeeccCCccccCC-----CC-CCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCch
Q 048083 500 IAELVSRSTRLQSLKLVYAWRDDYSDIP-----FK-AQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPM 572 (692)
Q Consensus 500 l~~~~~~~~~L~~L~l~~~~~~~~~~~~-----l~-~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~ 572 (692)
+..+. +|+.|.+..|...+..... .. .++++..+.+.++. ...+.|. .+|++|+.|.+..|.....++
T Consensus 713 ~~~l~----~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 713 LGSLG----NLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL-LFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ccccc----CcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh-hccCcccEEEEecccccccCC
Confidence 56666 9999999999765432211 11 14455555555554 4445444 445999999999999888888
Q ss_pred hhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC
Q 048083 573 EALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK 642 (692)
Q Consensus 573 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 642 (692)
+....+..+..+.+..+.+.+.......++|+++..+.+. ++.|+.+.+..|+++.
T Consensus 788 ~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~--------------~~~l~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 788 PKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS--------------FLKLEELIVEECPKLG 843 (889)
T ss_pred CHHHHhhhcccEEecccccccceeeecCCCCceeEecccC--------------ccchhheehhcCcccc
Confidence 8888888777755554444443333334444444444444 4446666666666666
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.8e-59 Score=547.82 Aligned_cols=606 Identities=18% Similarity=0.202 Sum_probs=399.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe---cCcc-----------c-hHHHHHHHHHHhhhhhhhcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV---RGDA-----------K-FRDVLIDILQQIDDETLVEA 66 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~~~~ 66 (692)
++++||||||||+||||||+++|++ +...|++.+|+.. .... . ...+++.++.++.....
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~--- 280 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD--- 280 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC---
Confidence 5789999999999999999999998 8899999888742 1110 0 11233444444433211
Q ss_pred CCChhHHHHHHHHHhccccEEEEEeCCCCccccccc-----CCCCc--------------ccccCCccccCCCCHHHHHH
Q 048083 67 SAPEADLVSSLTTLLKEISYLIVVEDVETPQVCNPN-----NIPPE--------------AEAAGPTLHLSRLNKEESWK 127 (692)
Q Consensus 67 ~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~~-----~~~~~--------------~~~~~~~~~l~~L~~~ea~~ 127 (692)
..... ...++++++++|+||||||||+.++|+.+ .+..+ ...+...|+++.+++++|++
T Consensus 281 -~~~~~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~ 358 (1153)
T PLN03210 281 -IKIYH-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALE 358 (1153)
T ss_pred -cccCC-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHH
Confidence 11111 24678889999999999999998888877 12222 12245678999999999999
Q ss_pred HHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHHHhcC----------CCC
Q 048083 128 LLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKEAKYWSKVIEHADN----------SRS 197 (692)
Q Consensus 128 Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~~~~w~~~l~~l~~----------~~s 197 (692)
||+++||+. . .+..++.+++++|+++|+|+||||+++|++|++++..+|+.++++++. ..|
T Consensus 359 LF~~~Af~~---~------~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~S 429 (1153)
T PLN03210 359 MFCRSAFKK---N------SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVS 429 (1153)
T ss_pred HHHHHhcCC---C------CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHh
Confidence 999999876 4 455678999999999999999999999999999999999999999875 679
Q ss_pred CCCCCc-cchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHHHHHhccceeeeeccCCCCceEEEcChH
Q 048083 198 GSGTGS-GLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFEELVIRNLIQVTKWRLDGSPKMCRMPSA 276 (692)
Q Consensus 198 ~~~L~~-~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~L~~~sLi~~~~~~~~~~~~~~~~h~l 276 (692)
|++|++ ..|.||+++||||.+..++ .+..|.+.+... +...++.|++++||+... ..++|||+
T Consensus 430 Yd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~~MHdL 493 (1153)
T PLN03210 430 YDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIVEMHSL 493 (1153)
T ss_pred hhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeEEhhhH
Confidence 999976 5999999999999987543 345566654431 344589999999998743 25999999
Q ss_pred HHHHHHHhhhccC------eEeecC-------cccccccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCcccc
Q 048083 277 VYRVFSKEAENAG------FFHHQL-------TEQQQSLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYC 343 (692)
Q Consensus 277 v~~~~~~~~~~~~------~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~ 343 (692)
+|+|++.+++++. -+.+.. .......+++++++..+.. ....+....|..|++|+.|.++.+....
T Consensus 494 l~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~-~~~~i~~~aF~~m~~L~~L~~~~~~~~~ 572 (1153)
T PLN03210 494 LQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI-DELHIHENAFKGMRNLLFLKFYTKKWDQ 572 (1153)
T ss_pred HHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc-ceeeecHHHHhcCccccEEEEecccccc
Confidence 9999999987653 111110 1223456778888875442 3344555667899999999987653111
Q ss_pred CcchhhhhHHHhhhccCCc-ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCc-c
Q 048083 344 SPAIEISTFLDKIISNRGL-VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHT-K 421 (692)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~-~ 421 (692)
. ......++..| ..+ ++||.|.+.++.+..+|.. + ...+|+.|+++++.+..+|..+..+++|+.|+|++| .
T Consensus 573 ~--~~~~~~lp~~~--~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~ 646 (1153)
T PLN03210 573 K--KEVRWHLPEGF--DYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN 646 (1153)
T ss_pred c--ccceeecCcch--hhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccccccccccCCCCCEEECCCCCC
Confidence 0 01111123333 333 3577777777777777765 4 456777777777777777776777777777777766 4
Q ss_pred ceecChhhhccccCceeeccccccc-ccccccCCCcccccccccccCCCc-ccccccccccccccccccccccchhhHHH
Q 048083 422 LRYLPDSIWKAKKLQHLYLNWIHSA-ISWLNFSSLNNLQTLWGLSMGDDS-LFNQTFDFTKLASLRKLGVKCYSQRVIDS 499 (692)
Q Consensus 422 l~~lp~~~~~l~~L~~L~l~~~~~~-~~~~~i~~l~~L~~L~~~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 499 (692)
+..+|. +..+++|+.|++++|... .+|..++.+++|+.| +++++. ...+|..+ ++++|+.|++++|.. ...
T Consensus 647 l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L---~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~--L~~ 719 (1153)
T PLN03210 647 LKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL---DMSRCENLEILPTGI-NLKSLYRLNLSGCSR--LKS 719 (1153)
T ss_pred cCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE---eCCCCCCcCccCCcC-CCCCCCEEeCCCCCC--ccc
Confidence 556664 666777777777776543 566666666655555 444332 22233233 566677777766521 011
Q ss_pred HHHHhhccCCcceEEeeeccCCccccC-----------------------------CCCCCCCccEEEEcccc--ccccc
Q 048083 500 IAELVSRSTRLQSLKLVYAWRDDYSDI-----------------------------PFKAQANLQELYLRGAL--RMFSA 548 (692)
Q Consensus 500 l~~~~~~~~~L~~L~l~~~~~~~~~~~-----------------------------~l~~~~~L~~L~L~~~~--~~~p~ 548 (692)
++ ...++|+.|+++++.+...... ....+++|+.|+++++. ..+|.
T Consensus 720 ~p---~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~ 796 (1153)
T PLN03210 720 FP---DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796 (1153)
T ss_pred cc---cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh
Confidence 11 1123566666666543322110 01123456666666654 44566
Q ss_pred cccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEecCCCcc
Q 048083 549 KTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMP 628 (692)
Q Consensus 549 ~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 628 (692)
++..+ ++|+.|+|++|......+.. ..+++|+.|++++|.... .++ ...++|+.|+|.+ +.++.+|.....++
T Consensus 797 si~~L-~~L~~L~Ls~C~~L~~LP~~-~~L~sL~~L~Ls~c~~L~-~~p---~~~~nL~~L~Ls~-n~i~~iP~si~~l~ 869 (1153)
T PLN03210 797 SIQNL-HKLEHLEIENCINLETLPTG-INLESLESLDLSGCSRLR-TFP---DISTNISDLNLSR-TGIEEVPWWIEKFS 869 (1153)
T ss_pred hhhCC-CCCCEEECCCCCCcCeeCCC-CCccccCEEECCCCCccc-ccc---ccccccCEeECCC-CCCccChHHHhcCC
Confidence 66666 66666666666433222222 256666666666554321 111 1234566666665 35666666667788
Q ss_pred ccceeecccccccC-CCcChhhhhccCcEEEEecCch
Q 048083 629 RLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMPS 664 (692)
Q Consensus 629 ~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~~ 664 (692)
+|+.|++.+|++++ +|..+..+++ |+.+++.+|++
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~-L~~L~l~~C~~ 905 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKH-LETVDFSDCGA 905 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccC-CCeeecCCCcc
Confidence 99999999999999 8888888888 99999999973
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.1e-36 Score=304.40 Aligned_cols=228 Identities=32% Similarity=0.557 Sum_probs=181.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhc-cCCChhHHHHHHHHH
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVE-ASAPEADLVSSLTTL 80 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~ 80 (692)
+.++|+|+||||+||||||++++++..+++.|+.++|++++...+..+++..|++++....... ...+.++....+.+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 5789999999999999999999999888899999999999999888999999999998875422 456777899999999
Q ss_pred hccccEEEEEeCCCCccccccc--CCCCc---------------ccc-c--CCccccCCCCHHHHHHHHHhhcccccccc
Q 048083 81 LKEISYLIVVEDVETPQVCNPN--NIPPE---------------AEA-A--GPTLHLSRLNKEESWKLLLKKVPVATAAE 140 (692)
Q Consensus 81 L~~k~~LlVLDdv~~~~~~~~~--~~~~~---------------~~~-~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 140 (692)
|+++++||||||||+..+|+.+ .++.. +.. . ...+++++|+++||++||.+.++.. .
T Consensus 98 L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~---~ 174 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRK---E 174 (287)
T ss_dssp HCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSH---S
T ss_pred hccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---c
Confidence 9999999999999998888766 22221 101 1 2357999999999999999999766 2
Q ss_pred CccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCC-hHHHHHHHHHhcC----------------CCCCCCCCc
Q 048083 141 SDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKE-AKYWSKVIEHADN----------------SRSGSGTGS 203 (692)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~-~~~w~~~l~~l~~----------------~~s~~~L~~ 203 (692)
. .......+.+++|+++|+|+||||+++|++|+.+. ..+|+.+++++.. ..||+.|++
T Consensus 175 ~-----~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~ 249 (287)
T PF00931_consen 175 S-----ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD 249 (287)
T ss_dssp ---------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT
T ss_pred c-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCc
Confidence 1 23455567899999999999999999999996554 7889998877644 357778899
Q ss_pred cchhHHhhhcCCCCCCccchhhHHHHHHhcCCCC
Q 048083 204 GLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAA 237 (692)
Q Consensus 204 ~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~ 237 (692)
++|+||+|||+||+++.|+++.++.+|+++|++.
T Consensus 250 ~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 250 ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 9999999999999999999999999999999983
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.3e-25 Score=265.96 Aligned_cols=292 Identities=21% Similarity=0.218 Sum_probs=134.1
Q ss_pred cceEEEEeecCCCCC-CCChhhhccccccceeeccCCCc-cccCccccCCCCCeEEecCCccce-ecChhhhccccCcee
Q 048083 362 LVLLTVLDLEGVYKP-KLSDHVIGKLLHLSYLGLRSTFI-DSLPNSVGNLRYLETLDVKHTKLR-YLPDSIWKAKKLQHL 438 (692)
Q Consensus 362 ~~~L~~L~L~~~~~~-~l~~~~~~~l~~L~~L~l~~~~i-~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L 438 (692)
+++|++|+|++|.+. .+|.. ++.+++|++|++++|.+ ..+|..++++++|++|++++|.+. .+|..++++++|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 344444444444443 23333 44444555555544443 234444444455555555444443 344444444555555
Q ss_pred eccccccc-ccccccCCCcccccccccccCCCcc-ccccccccccccccccccccc--chhhHHHHHHHhhccCCcceEE
Q 048083 439 YLNWIHSA-ISWLNFSSLNNLQTLWGLSMGDDSL-FNQTFDFTKLASLRKLGVKCY--SQRVIDSIAELVSRSTRLQSLK 514 (692)
Q Consensus 439 ~l~~~~~~-~~~~~i~~l~~L~~L~~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~~~~~~~~L~~L~ 514 (692)
++++|.+. .+|..++.+++|+.| +++.+.. ...|..++++++|+.|+++.+ ....+..+..+. +|++|+
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L---~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~----~L~~L~ 290 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHL---DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ----KLISLD 290 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEE---ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc----CcCEEE
Confidence 55444443 334444444444433 3333321 122334444455555554443 122333333333 555555
Q ss_pred eeeccCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccC
Q 048083 515 LVYAWRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYE 592 (692)
Q Consensus 515 l~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 592 (692)
+++|......+..+..+++|+.|+++++. ..+|.++..+ ++|+.|++++|.+....+..++.+++|+.|++++|.+.
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 55544443333444444455555554443 2334444444 44555555555444444444444455555555444332
Q ss_pred cc-----------------------EEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcChh
Q 048083 593 GK-----------------------KMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLR 648 (692)
Q Consensus 593 ~~-----------------------~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~ 648 (692)
+. ..+.....+++|+.|++.+|.--..+|.....+++|+.|++++|.... +|..+.
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 449 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence 21 112223345556666655544333334444456666666666654333 555555
Q ss_pred hhhccCcEEEEecCc
Q 048083 649 NLAATLKDIVLTNMP 663 (692)
Q Consensus 649 ~l~~sL~~L~i~~c~ 663 (692)
.+++ |+.|++.+|.
T Consensus 450 ~l~~-L~~L~L~~n~ 463 (968)
T PLN00113 450 DMPS-LQMLSLARNK 463 (968)
T ss_pred cCCC-CcEEECcCce
Confidence 6666 7777766664
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.6e-25 Score=265.09 Aligned_cols=337 Identities=19% Similarity=0.167 Sum_probs=256.4
Q ss_pred cceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChh
Q 048083 302 LFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDH 381 (692)
Q Consensus 302 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~ 381 (692)
..++.+.+.... ........|..+++|+.|.+.++.+.. .++...| ..+++|++|+|++|.+....+
T Consensus 69 ~~v~~L~L~~~~---i~~~~~~~~~~l~~L~~L~Ls~n~~~~-------~ip~~~~--~~l~~L~~L~Ls~n~l~~~~p- 135 (968)
T PLN00113 69 SRVVSIDLSGKN---ISGKISSAIFRLPYIQTINLSNNQLSG-------PIPDDIF--TTSSSLRYLNLSNNNFTGSIP- 135 (968)
T ss_pred CcEEEEEecCCC---ccccCChHHhCCCCCCEEECCCCccCC-------cCChHHh--ccCCCCCEEECcCCccccccC-
Confidence 456777776322 111223345689999999999887321 1345667 799999999999999874333
Q ss_pred hhccccccceeeccCCCcc-ccCccccCCCCCeEEecCCccce-ecChhhhccccCceeeccccccc-ccccccCCCccc
Q 048083 382 VIGKLLHLSYLGLRSTFID-SLPNSVGNLRYLETLDVKHTKLR-YLPDSIWKAKKLQHLYLNWIHSA-ISWLNFSSLNNL 458 (692)
Q Consensus 382 ~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~i~~l~~L 458 (692)
.+.+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|
T Consensus 136 -~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 136 -RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred -ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 356899999999999885 67888999999999999999877 78999999999999999999877 567788888777
Q ss_pred ccccccccCCCc-cccccccccccccccccccccc--chhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCcc
Q 048083 459 QTLWGLSMGDDS-LFNQTFDFTKLASLRKLGVKCY--SQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQ 535 (692)
Q Consensus 459 ~~L~~~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 535 (692)
+.| +++.+. ....|..++++++|+.|+++++ ....+..+..+. +|+.|++++|......+..+..+++|+
T Consensus 215 ~~L---~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~----~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 215 KWI---YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK----NLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred cEE---ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC----CCCEEECcCCeeeccCchhHhhccCcC
Confidence 777 666665 2356667999999999999987 334566676666 999999999988777777888999999
Q ss_pred EEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEecc
Q 048083 536 ELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWN 613 (692)
Q Consensus 536 ~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 613 (692)
.|++++|. ..+|.++..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+.+ .++...+.+++|+.|++++
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG-EIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred EEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC-cCChHHhCCCCCcEEECCC
Confidence 99999887 5788888888 999999999999988788889999999999999988764 3344556778888888876
Q ss_pred CCCCcEEEecC------------------------CCccccceeecccccccC-CCcChhhhhccCcEEEEecC
Q 048083 614 LSSLEEWTVQE------------------------AAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNM 662 (692)
Q Consensus 614 ~~~l~~l~~~~------------------------~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c 662 (692)
+.-...+|... +.+++|+.|++.+|.... +|..+..+++ |+.|++++|
T Consensus 366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~Ls~N 438 (968)
T PLN00113 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL-VYFLDISNN 438 (968)
T ss_pred CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC-CCEEECcCC
Confidence 54222233222 234556666666654433 5555666666 666666655
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=2.6e-26 Score=232.25 Aligned_cols=318 Identities=21% Similarity=0.201 Sum_probs=214.6
Q ss_pred cccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCC
Q 048083 300 QSLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLS 379 (692)
Q Consensus 300 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~ 379 (692)
...+..|+++.++. ...+.. -..+++.||++++..+... ...+++++| ++..|.+|||++|.+.+.|
T Consensus 53 ~lqkLEHLs~~HN~---L~~vhG-ELs~Lp~LRsv~~R~N~LK------nsGiP~diF---~l~dLt~lDLShNqL~EvP 119 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQ---LISVHG-ELSDLPRLRSVIVRDNNLK------NSGIPTDIF---RLKDLTILDLSHNQLREVP 119 (1255)
T ss_pred HHhhhhhhhhhhhh---hHhhhh-hhccchhhHHHhhhccccc------cCCCCchhc---ccccceeeecchhhhhhcc
Confidence 34667777776443 111221 1236888888888877622 223455655 7888888999998888888
Q ss_pred hhhhccccccceeeccCCCccccCccc-cCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCccc
Q 048083 380 DHVIGKLLHLSYLGLRSTFIDSLPNSV-GNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNL 458 (692)
Q Consensus 380 ~~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L 458 (692)
.. +..-+++-+|+||+|+|..+|..+ -+|..|-+|||++|.+..+|.-+..+.+|+.|++++|++... .+..++++
T Consensus 120 ~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf--QLrQLPsm 196 (1255)
T KOG0444|consen 120 TN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF--QLRQLPSM 196 (1255)
T ss_pred hh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH--HHhcCccc
Confidence 88 888888888899988888888654 578888888999888888888888888889998888876532 12334444
Q ss_pred ccccccccCCCc--cccccccccccccccccccccc-chhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCcc
Q 048083 459 QTLWGLSMGDDS--LFNQTFDFTKLASLRKLGVKCY-SQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQ 535 (692)
Q Consensus 459 ~~L~~~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 535 (692)
+.|+.+.+++.. ...+|.++..|.||+.++++.+ ....+..+-++. +|+.|+|++|.++.... ....-.+|+
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~----~LrrLNLS~N~iteL~~-~~~~W~~lE 271 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR----NLRRLNLSGNKITELNM-TEGEWENLE 271 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh----hhheeccCcCceeeeec-cHHHHhhhh
Confidence 444444665554 5566777777888888877765 334555666666 77777777776655422 222334677
Q ss_pred EEEEcccc-ccccccccCccCccceeeeeccCCCCCchh-hhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEecc
Q 048083 536 ELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPME-ALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWN 613 (692)
Q Consensus 536 ~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 613 (692)
+|+++.+. ..+|..++.+ +.|++|.+.+|+++-..+| .+++|.+|+.+...+|.+ +-.|.....|++|+.|.|.
T Consensus 272 tLNlSrNQLt~LP~avcKL-~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~- 347 (1255)
T KOG0444|consen 272 TLNLSRNQLTVLPDAVCKL-TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLD- 347 (1255)
T ss_pred hhccccchhccchHHHhhh-HHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhccc-
Confidence 77777766 6677777777 7777777777766544333 366677777777665554 2334455566777777765
Q ss_pred CCCCcEEEecCCCccccceeecccccccC
Q 048083 614 LSSLEEWTVQEAAMPRLRELEIRSCNKLK 642 (692)
Q Consensus 614 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 642 (692)
|+.+-.+|..+.-++.|+.|+++.+++|-
T Consensus 348 ~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 348 HNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccceeechhhhhhcCCcceeeccCCcCcc
Confidence 35566666666666777777777777766
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.3e-25 Score=227.16 Aligned_cols=314 Identities=19% Similarity=0.188 Sum_probs=267.7
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCC--CCChhhhccccccceeeccCCCccccCc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKP--KLSDHVIGKLLHLSYLGLRSTFIDSLPN 404 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~l~~~~~~~l~~L~~L~l~~~~i~~lp~ 404 (692)
.+.+|..|.+..+. ...+..-+ +.++.||.+++..|++. .+|+. +.++..|..||||+|.+.+.|.
T Consensus 53 ~lqkLEHLs~~HN~---------L~~vhGEL--s~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~ 120 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQ---------LISVHGEL--SDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPT 120 (1255)
T ss_pred HHhhhhhhhhhhhh---------hHhhhhhh--ccchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcch
Confidence 56777778877776 11245556 89999999999999976 78999 9999999999999999999999
Q ss_pred cccCCCCCeEEecCCccceecChh-hhccccCceeecccccccccccccCCCcccccccccccCCCccccc-cccccccc
Q 048083 405 SVGNLRYLETLDVKHTKLRYLPDS-IWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQ-TFDFTKLA 482 (692)
Q Consensus 405 ~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~-~~~l~~l~ 482 (692)
.+.+.+++-+|+|++|+|..+|.. +-++..|-+||+++|.+..+|+.+..+..||+| +++++...-+ ...+..|.
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL---~Ls~NPL~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL---KLSNNPLNHFQLRQLPSMT 197 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh---hcCCChhhHHHHhcCccch
Confidence 999999999999999999999975 578999999999999999999998888888888 6777652111 11456677
Q ss_pred cccccccccc---chhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccc
Q 048083 483 SLRKLGVKCY---SQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLK 558 (692)
Q Consensus 483 ~L~~L~l~~~---~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~ 558 (692)
+|+.|.+++. ...++.++..+. ||..++++.|+.. ..+..+-.+++|+.|+|+++. +.+....... .+|+
T Consensus 198 sL~vLhms~TqRTl~N~Ptsld~l~----NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W-~~lE 271 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTLDNIPTSLDDLH----NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEW-ENLE 271 (1255)
T ss_pred hhhhhhcccccchhhcCCCchhhhh----hhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHH-hhhh
Confidence 8888888887 456788899998 9999999999544 356778889999999999987 7777667777 8999
Q ss_pred eeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccc
Q 048083 559 IVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSC 638 (692)
Q Consensus 559 ~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c 638 (692)
+|+|+.|+++. .+..+.+|+.|+.|...+|.+.-+.+|..++.+..|+.+...+ +.++-.|.....+++|+.|.+..+
T Consensus 272 tLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 272 TLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccc
Confidence 99999999986 5677899999999999999988889999999999999999987 678999999999999999999875
Q ss_pred cccCCCcChhhhhccCcEEEEecCch
Q 048083 639 NKLKPPEGLRNLAATLKDIVLTNMPS 664 (692)
Q Consensus 639 ~~l~~p~~~~~l~~sL~~L~i~~c~~ 664 (692)
.-+++|+++.-+|. |+.|++.++|+
T Consensus 350 rLiTLPeaIHlL~~-l~vLDlreNpn 374 (1255)
T KOG0444|consen 350 RLITLPEAIHLLPD-LKVLDLRENPN 374 (1255)
T ss_pred ceeechhhhhhcCC-cceeeccCCcC
Confidence 54449999999999 99999999874
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-24 Score=218.96 Aligned_cols=343 Identities=21% Similarity=0.223 Sum_probs=257.2
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccC-cc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLP-NS 405 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp-~~ 405 (692)
...++..|.+.++.+ ..+-.+.+ +-++.||+|||+.|.++.++...|..-.++++|+|++|.|+.+. ..
T Consensus 123 ~sghl~~L~L~~N~I--------~sv~se~L--~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~ 192 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLI--------SSVTSEEL--SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH 192 (873)
T ss_pred cccceeEEeeecccc--------ccccHHHH--HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc
Confidence 355678888877762 22445556 77888999999999888887665777788999999999888876 45
Q ss_pred ccCCCCCeEEecCCccceecCh-hhhccccCceeeccccccccc-ccccCCCcccccccccccCCCccccccc-cccccc
Q 048083 406 VGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHSAIS-WLNFSSLNNLQTLWGLSMGDDSLFNQTF-DFTKLA 482 (692)
Q Consensus 406 ~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~-~~~i~~l~~L~~L~~~~~~~~~~~~~~~-~l~~l~ 482 (692)
|..+.+|-+|.|+.|.++.+|. .+.++++|+.|+|..|.+... ...|..+.+|+.| .+..+...++-. .+-.|.
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl---klqrN~I~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL---KLQRNDISKLDDGAFYGLE 269 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh---hhhhcCcccccCcceeeec
Confidence 7788899999999999998885 567799999999998887644 3445556666655 444443222211 367788
Q ss_pred cccccccccc--chhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccc-cccCccCccc
Q 048083 483 SLRKLGVKCY--SQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSA-KTSSFPRNLK 558 (692)
Q Consensus 483 ~L~~L~l~~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~-~~~~l~~~L~ 558 (692)
++++|++..+ ......++-++. .|+.|+++.|.+..+..+.++-+++|+.|+|+.+. +.+++ .+..+ ..|+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt----~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le 344 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLT----SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLE 344 (873)
T ss_pred ccceeecccchhhhhhcccccccc----hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH-HHhh
Confidence 8888888865 223334555555 99999999999999999999999999999999987 66654 34455 8999
Q ss_pred eeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccE--EEEecCCCCcccEEEeccCCCCcEEEec-CCCccccceeec
Q 048083 559 IVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKK--MTCQAGGFPQLRVLKLWNLSSLEEWTVQ-EAAMPRLRELEI 635 (692)
Q Consensus 559 ~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l 635 (692)
.|.|+.|.+....-..|.++++|+.|+++.|.+.... -...+.++++|++|.+.+ +.++.++.. ...+++|++|++
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecC
Confidence 9999999998888888999999999999998775321 223456799999999998 568888753 456899999999
Q ss_pred ccccccC-CCcChhhhhccCcEEEE------ecCchHHHHHHhhhcCCceeccccccCCCCC
Q 048083 636 RSCNKLK-PPEGLRNLAATLKDIVL------TNMPSTFGEEAQRILQGTDVYIQKNQWPPFL 690 (692)
Q Consensus 636 ~~c~~l~-~p~~~~~l~~sL~~L~i------~~c~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 690 (692)
.++..-. -|..+..+ . |++|.+ .+|.-.|...|-.++.-.---..++.||..|
T Consensus 424 ~~NaiaSIq~nAFe~m-~-Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~L 483 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM-E-LKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPL 483 (873)
T ss_pred CCCcceeecccccccc-h-hhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCccc
Confidence 9977666 88888888 6 888865 4687677655544333333345566788765
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=5.6e-23 Score=207.04 Aligned_cols=315 Identities=19% Similarity=0.187 Sum_probs=208.8
Q ss_pred ccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccC-
Q 048083 325 LDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLP- 403 (692)
Q Consensus 325 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp- 403 (692)
|.++++|+.+.+..+. ...+|.+- ....+|+.|+|.+|.+..+..+.+..++.||.|||+.|.|.++|
T Consensus 98 f~nl~nLq~v~l~~N~---------Lt~IP~f~--~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNE---------LTRIPRFG--HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK 166 (873)
T ss_pred HhcCCcceeeeeccch---------hhhccccc--ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC
Confidence 3455666666555554 12234443 44455666666666666555544666666777777777666666
Q ss_pred ccccCCCCCeEEecCCccceecC-hhhhccccCceeecccccccccccc-cCCCcccccccccccCCCc--ccccccccc
Q 048083 404 NSVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQHLYLNWIHSAISWLN-FSSLNNLQTLWGLSMGDDS--LFNQTFDFT 479 (692)
Q Consensus 404 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~-i~~l~~L~~L~~~~~~~~~--~~~~~~~l~ 479 (692)
+++..-.++++|+|++|.|+.+- ..+..+.+|..|.|+.|.++.+|.. |.+++.|+.| ++..+. .++ -..+.
T Consensus 167 ~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L---dLnrN~irive-~ltFq 242 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL---DLNRNRIRIVE-GLTFQ 242 (873)
T ss_pred CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhh---hccccceeeeh-hhhhc
Confidence 34455566777777777776653 3466666777777777777666543 3335555444 555553 111 11466
Q ss_pred cccccccccccccc--hhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc--ccccccccCccC
Q 048083 480 KLASLRKLGVKCYS--QRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPR 555 (692)
Q Consensus 480 ~l~~L~~L~l~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~ 555 (692)
+|++|+.|.+..+. .-..+.|-. |.++++|+|+.|.........+-.+.+|+.|+++.+. ..-++..... +
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~----l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft-q 317 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYG----LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT-Q 317 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceee----ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc-c
Confidence 77777777776541 111122333 3488889999888777777777788899999999876 3334444455 8
Q ss_pred ccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEe----cCCCccccc
Q 048083 556 NLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTV----QEAAMPRLR 631 (692)
Q Consensus 556 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~~~~L~ 631 (692)
+|+.|+|++|+++......|..|..|+.|++++|.+... ....+.++++|++|+|+++ .+.-..+ ....+++|+
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l-~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL-AEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHH-HhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhh
Confidence 999999999999998999999999999999999887531 1223457899999999873 3432222 223489999
Q ss_pred eeecccccccC-CCc-ChhhhhccCcEEEEecCc
Q 048083 632 ELEIRSCNKLK-PPE-GLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 632 ~L~l~~c~~l~-~p~-~~~~l~~sL~~L~i~~c~ 663 (692)
+|.+.+ ++++ +|. .+..+++ |++|++.+++
T Consensus 396 kL~l~g-Nqlk~I~krAfsgl~~-LE~LdL~~Na 427 (873)
T KOG4194|consen 396 KLRLTG-NQLKSIPKRAFSGLEA-LEHLDLGDNA 427 (873)
T ss_pred heeecC-ceeeecchhhhccCcc-cceecCCCCc
Confidence 999999 7788 766 7788899 9999998875
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=5.9e-20 Score=217.69 Aligned_cols=292 Identities=17% Similarity=0.190 Sum_probs=203.4
Q ss_pred CcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCC-CccccCccc
Q 048083 328 SCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRST-FIDSLPNSV 406 (692)
Q Consensus 328 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~-~i~~lp~~~ 406 (692)
.++||.|.+.++...+ +|..| .+.+|+.|++.++.+..++.. +..+++|++|+|+++ .+..+|. +
T Consensus 588 p~~Lr~L~~~~~~l~~---------lP~~f---~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-l 653 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRC---------MPSNF---RPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPD-L 653 (1153)
T ss_pred CcccEEEEecCCCCCC---------CCCcC---CccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCc-c
Confidence 3568888887766322 33444 357788888888888888777 778888888888775 4566664 7
Q ss_pred cCCCCCeEEecCCc-cceecChhhhccccCceeeccccccc-ccccccCCCccccccccc------------------cc
Q 048083 407 GNLRYLETLDVKHT-KLRYLPDSIWKAKKLQHLYLNWIHSA-ISWLNFSSLNNLQTLWGL------------------SM 466 (692)
Q Consensus 407 ~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~-~~~~~i~~l~~L~~L~~~------------------~~ 466 (692)
+.+++|++|++++| .+..+|..+.++++|+.|++++|... .+|..+ ++++|+.|... ++
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L 732 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDL 732 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeec
Confidence 77888888888887 66788888888888888888877543 555544 44444444221 22
Q ss_pred CCCcccccccccccccccccccccccch-hhHHHH----HHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcc
Q 048083 467 GDDSLFNQTFDFTKLASLRKLGVKCYSQ-RVIDSI----AELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRG 541 (692)
Q Consensus 467 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~l----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~ 541 (692)
+.+....+|..+ .+++|+.|.+..+.. .+...+ ......+++|+.|++++|......+..++.+++|+.|+|++
T Consensus 733 ~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 733 DETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred CCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 222222222222 345555555544210 000000 00111234899999999876666677789999999999998
Q ss_pred cc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcE
Q 048083 542 AL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEE 619 (692)
Q Consensus 542 ~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 619 (692)
|. ..+|..+ .+ ++|++|++++|......+. ..++|+.|++++|.+. .+|.....+++|+.|++.+|++++.
T Consensus 812 C~~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 812 CINLETLPTGI-NL-ESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CCCcCeeCCCC-Cc-cccCEEECCCCCccccccc---cccccCEeECCCCCCc--cChHHHhcCCCCCEEECCCCCCcCc
Confidence 75 6778665 56 8999999999965432221 2468999999988775 4555677899999999999999999
Q ss_pred EEecCCCccccceeecccccccC
Q 048083 620 WTVQEAAMPRLRELEIRSCNKLK 642 (692)
Q Consensus 620 l~~~~~~~~~L~~L~l~~c~~l~ 642 (692)
++.....+++|+.+++++|.+|+
T Consensus 885 l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred cCcccccccCCCeeecCCCcccc
Confidence 99988899999999999999988
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.1e-22 Score=196.38 Aligned_cols=291 Identities=23% Similarity=0.231 Sum_probs=159.2
Q ss_pred CcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeec
Q 048083 361 GLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYL 440 (692)
Q Consensus 361 ~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l 440 (692)
....|+.|+.+.|.+..++++ ++.+..|..|+..+|.+..+|..++++..|..|++.+|+++.+|...-.|+.|++||.
T Consensus 112 s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDC 190 (565)
T ss_pred hhhhhhhhhccccceeecCch-HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhccc
Confidence 444444445555544444444 4445555555555555555555555555555555555555544444334555555555
Q ss_pred ccccccccccccCCCcccccccccccCCCccccccccccccccccccccccc-chhhHHHHHHHhhccCCcceEEeeecc
Q 048083 441 NWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCY-SQRVIDSIAELVSRSTRLQSLKLVYAW 519 (692)
Q Consensus 441 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~ 519 (692)
..|.+..+|+.++.+.+|..| ++..+.....| +|.++..|..|.+..+ .+.++.... ..++.+..|+++.|.
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~L---yL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~---~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELL---YLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHL---KHLNSLLVLDLRDNK 263 (565)
T ss_pred chhhhhcCChhhcchhhhHHH---HhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHh---cccccceeeeccccc
Confidence 555555555555544444433 44444222222 5555555555555433 222222222 233477778888875
Q ss_pred CCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCC----------------------------
Q 048083 520 RDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWD---------------------------- 570 (692)
Q Consensus 520 ~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~---------------------------- 570 (692)
..+ .++.+.-+.+|++|+++++. ..+|...+.+ .|+.|.+.||.+...
T Consensus 264 lke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 264 LKE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred ccc-CchHHHHhhhhhhhcccCCccccCCcccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 444 34455556677777777665 5566555554 555555555532110
Q ss_pred --------------------------------------------------------------------------------
Q 048083 571 -------------------------------------------------------------------------------- 570 (692)
Q Consensus 571 -------------------------------------------------------------------------------- 570 (692)
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence
Q ss_pred ------chhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEE-----------------------
Q 048083 571 ------PMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWT----------------------- 621 (692)
Q Consensus 571 ------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~----------------------- 621 (692)
.+..+..+++|..|++++|... .+|...+.+-.|+.|+|+.. .+..+|
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchhh--hcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccC
Confidence 1123444566666666654432 23434455566777777652 343332
Q ss_pred ec-CCCccccceeecccccccC-CCcChhhhhccCcEEEEecCchHHH
Q 048083 622 VQ-EAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMPSTFG 667 (692)
Q Consensus 622 ~~-~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~~~~~ 667 (692)
.. ...|.+|+.|++.+ +.+. +|.+++++++ |++|++.|.|=...
T Consensus 498 ~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgnmtn-L~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTN-LRHLELDGNPFRQP 543 (565)
T ss_pred hHHhhhhhhcceeccCC-CchhhCChhhccccc-eeEEEecCCccCCC
Confidence 11 34578999999998 4566 9999999999 99999999984333
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=1.2e-20 Score=182.25 Aligned_cols=243 Identities=23% Similarity=0.248 Sum_probs=206.0
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSV 406 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~ 406 (692)
++..+.++.+.++.. ..++..+ .++..++.|+.++|++..+|+. ++.+..|+.|+.+.|.+.++|+++
T Consensus 66 nL~~l~vl~~~~n~l---------~~lp~ai--g~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~~i 133 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKL---------SQLPAAI--GELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPDSI 133 (565)
T ss_pred cccceeEEEeccchh---------hhCCHHH--HHHHHHHHhhcccchHhhccHH-HhhhhhhhhhhccccceeecCchH
Confidence 566677777777762 2345666 7888889999999999999999 999999999999999999999999
Q ss_pred cCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCcccccccccccCCCccccccccccccccccc
Q 048083 407 GNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRK 486 (692)
Q Consensus 407 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~ 486 (692)
+.+-.|+.|+..+|+++.+|.++.++.+|..+++.+|.....|+..-+++.|++| ++..+....+|++++.|.+|..
T Consensus 134 ~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l---d~~~N~L~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL---DCNSNLLETLPPELGGLESLEL 210 (565)
T ss_pred HHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc---ccchhhhhcCChhhcchhhhHH
Confidence 9999999999999999999999999999999999999999888776667777776 8888877788899999999999
Q ss_pred ccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeecc
Q 048083 487 LGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMS 565 (692)
Q Consensus 487 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~ 565 (692)
|++..+.-.+..+|+... .|.+|++..|.+.........+++++..|+++.+. ..+|..++-+ ++|..|++++|
T Consensus 211 LyL~~Nki~~lPef~gcs----~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clL-rsL~rLDlSNN 285 (565)
T KOG0472|consen 211 LYLRRNKIRFLPEFPGCS----LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL-RSLERLDLSNN 285 (565)
T ss_pred HHhhhcccccCCCCCccH----HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHh-hhhhhhcccCC
Confidence 999876444444555544 99999999998777666677889999999999988 8899999999 99999999999
Q ss_pred CCCCCchhhhhcCCCCCeeeecCCcc
Q 048083 566 RLYWDPMEALEKLCHLNILRIIGEAY 591 (692)
Q Consensus 566 ~l~~~~~~~l~~l~~L~~L~l~~~~~ 591 (692)
.++. .+..++++ +|+.|-+.+|.+
T Consensus 286 ~is~-Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 286 DISS-LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cccc-CCcccccc-eeeehhhcCCch
Confidence 9987 45678998 999999888753
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=1.5e-18 Score=184.85 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=90.4
Q ss_pred ccCCCCCCCCccEEEEcccc-ccccccccC------------------c-------cCccceeeeeccCCCCCchhhhhc
Q 048083 524 SDIPFKAQANLQELYLRGAL-RMFSAKTSS------------------F-------PRNLKIVTLSMSRLYWDPMEALEK 577 (692)
Q Consensus 524 ~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~------------------l-------~~~L~~L~L~~~~l~~~~~~~l~~ 577 (692)
.+....+.++|++|+|..+. ..+|..+.. + .+.|+.|.+.+|.+++..++.+.+
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 44556677889999888754 444432110 1 156888888899999888999999
Q ss_pred CCCCCeeeecCCccCccEEEE-ecCCCCcccEEEeccCCCCcEEEe----------------------cCCCccccceee
Q 048083 578 LCHLNILRIIGEAYEGKKMTC-QAGGFPQLRVLKLWNLSSLEEWTV----------------------QEAAMPRLRELE 634 (692)
Q Consensus 578 l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~----------------------~~~~~~~L~~L~ 634 (692)
.++|+.|++++|.+.. ++. ...+++.|+.|++++ +.|+.+|. ....+++|+.+|
T Consensus 382 ~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeeccccccc--CCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence 9999999999886542 222 335677788888887 34554443 233467888888
Q ss_pred cccccccC---CCcChhhhhccCcEEEEecCc
Q 048083 635 IRSCNKLK---PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 635 l~~c~~l~---~p~~~~~l~~sL~~L~i~~c~ 663 (692)
++. ++|. +|..... |+ |++|+++|+.
T Consensus 459 lS~-N~L~~~~l~~~~p~-p~-LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSC-NNLSEVTLPEALPS-PN-LKYLDLSGNT 487 (1081)
T ss_pred ccc-chhhhhhhhhhCCC-cc-cceeeccCCc
Confidence 874 5555 5554333 56 8888888877
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=1.5e-15 Score=167.17 Aligned_cols=254 Identities=21% Similarity=0.148 Sum_probs=155.4
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeeccc
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNW 442 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 442 (692)
..-.+|+++++.++.+|+. +. .+|+.|++.+|.+..+|.. +++|++|++++|+++.+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 3355677777777777776 54 3677777877777777753 56777888887777777643 35677777777
Q ss_pred ccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCc
Q 048083 443 IHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDD 522 (692)
Q Consensus 443 ~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 522 (692)
|.+..+|... .+|+. +++..+....+|. .+++|+.|+++++.-. .++.++ .+|+.|++++|.++.
T Consensus 272 N~L~~Lp~lp---~~L~~---L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~---~Lp~lp---~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 272 NPLTHLPALP---SGLCK---LWIFGNQLTSLPV---LPPGLQELSVSDNQLA---SLPALP---SELCKLWAYNNQLTS 336 (788)
T ss_pred Cchhhhhhch---hhcCE---EECcCCccccccc---cccccceeECCCCccc---cCCCCc---ccccccccccCcccc
Confidence 7766555422 22333 3555554333332 2356777777665111 111111 257777777776554
Q ss_pred cccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecC
Q 048083 523 YSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAG 601 (692)
Q Consensus 523 ~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 601 (692)
+.. ..++|+.|+|++|. ..+|. +|.+|+.|++++|.+...+ . ..++|+.|++++|.+.. ++.
T Consensus 337 LP~----lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP--~--l~~~L~~LdLs~N~Lt~--LP~--- 399 (788)
T PRK15387 337 LPT----LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP--A--LPSGLKELIVSGNRLTS--LPV--- 399 (788)
T ss_pred ccc----cccccceEecCCCccCCCCC----CCcccceehhhccccccCc--c--cccccceEEecCCcccC--CCC---
Confidence 221 12367788887766 55552 3467777778777766422 1 13467788887776653 221
Q ss_pred CCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 602 GFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 602 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
..++|+.|+++++ .++.+|.. ..+|+.|++++ ++++ +|..+..+++ |+.|++++++
T Consensus 400 l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~-L~~LdLs~N~ 456 (788)
T PRK15387 400 LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSS-ETTVNLEGNP 456 (788)
T ss_pred cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccC-CCeEECCCCC
Confidence 2357778888774 36665532 34677777777 4466 7777777777 8888887765
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.9e-17 Score=176.42 Aligned_cols=269 Identities=25% Similarity=0.270 Sum_probs=170.8
Q ss_pred CcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeec
Q 048083 361 GLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYL 440 (692)
Q Consensus 361 ~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l 440 (692)
.-++|+.|+.++|.+..+... ..-.+|++++++.+.+..+|+.++.|.+|+.+++.+|+++.+|..+..+++|+.|.+
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSA 294 (1081)
T ss_pred cCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHh
Confidence 445566666666666533221 233567777777777777777777777777777777777777777777777777777
Q ss_pred ccccccccccccCCCcccccccccccCCCcccccccc-ccccc-ccccccccccchhhHHHHHHHhhccCCcceEEeeec
Q 048083 441 NWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFD-FTKLA-SLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYA 518 (692)
Q Consensus 441 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~-l~~l~-~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 518 (692)
..|.+..+|+..+.++.|+.| ++..+....+|.. +..+. +|+.|+.+.+........... ....|+.|.+.+|
T Consensus 295 ~~nel~yip~~le~~~sL~tL---dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~--~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTL---DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEEN--NHAALQELYLANN 369 (1081)
T ss_pred hhhhhhhCCCcccccceeeee---eehhccccccchHHHhhhhHHHHHHhhhhccccccccccch--hhHHHHHHHHhcC
Confidence 777777777666666666655 5555543333332 12222 244455444311111111110 1126777788888
Q ss_pred cCCccccCCCCCCCCccEEEEcccc-ccccccc-cCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEE
Q 048083 519 WRDDYSDIPFKAQANLQELYLRGAL-RMFSAKT-SSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKM 596 (692)
Q Consensus 519 ~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~-~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 596 (692)
..++.....+..+++|+.|+|+++. +.+|... ..+ ..|++|+|++|+++..+ ..+..++.|+.|...+|.+. .+
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl-e~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~--~f 445 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL-EELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLL--SF 445 (1081)
T ss_pred cccccchhhhccccceeeeeecccccccCCHHHHhch-HHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCcee--ec
Confidence 7777777778888888888888776 6666543 344 77888888888877644 66777888888877766653 33
Q ss_pred EEecCCCCcccEEEeccCCCCcEEEecCCC-ccccceeecccccccC
Q 048083 597 TCQAGGFPQLRVLKLWNLSSLEEWTVQEAA-MPRLRELEIRSCNKLK 642 (692)
Q Consensus 597 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~L~~L~l~~c~~l~ 642 (692)
| ....++.|+.++++ |++++.+...... -|+|++|+++++..+.
T Consensus 446 P-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred h-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 4 55567788888887 4666655433221 1678888888877555
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=1.7e-14 Score=159.13 Aligned_cols=241 Identities=19% Similarity=0.125 Sum_probs=127.4
Q ss_pred eEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccc
Q 048083 364 LLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWI 443 (692)
Q Consensus 364 ~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~ 443 (692)
+|+.|++.+|.++.+|.. +++|++|++++|.+..+|.. .++|+.|++++|.++.+|... .+|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCC
Confidence 344455555555444432 24455555555555444432 234445555555444444321 33444555555
Q ss_pred cccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCcc
Q 048083 444 HSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDY 523 (692)
Q Consensus 444 ~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 523 (692)
.+..+|... ++|+. ++++++....+|.. ..+|+.|.+.++.-. .++.++ .+|+.|++++|.+...
T Consensus 293 ~Lt~LP~~p---~~L~~---LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~---~LP~lp---~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 293 QLTSLPVLP---PGLQE---LSVSDNQLASLPAL---PSELCKLWAYNNQLT---SLPTLP---SGLQELSVSDNQLASL 357 (788)
T ss_pred ccccccccc---cccce---eECCCCccccCCCC---cccccccccccCccc---cccccc---cccceEecCCCccCCC
Confidence 444443311 12222 24444432222211 123444444433110 111111 2788888888866653
Q ss_pred ccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCC
Q 048083 524 SDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGG 602 (692)
Q Consensus 524 ~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 602 (692)
.. ..++|+.|+++++. ..+|. ++.+|+.|++++|.+...+. ..++|+.|++++|.+.. ++. .
T Consensus 358 P~----lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~Lss--IP~---l 420 (788)
T PRK15387 358 PT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTS--LPM---L 420 (788)
T ss_pred CC----CCcccceehhhccccccCcc----cccccceEEecCCcccCCCC----cccCCCEEEccCCcCCC--CCc---c
Confidence 21 13477888887765 55553 23678888888888775321 13578888888887753 221 2
Q ss_pred CCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcCh
Q 048083 603 FPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGL 647 (692)
Q Consensus 603 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~ 647 (692)
+.+|+.|++++ +.++.+|.....+++|+.|++++|+--. .|..+
T Consensus 421 ~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 35688888887 4577888777778888888888865333 55444
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.9e-16 Score=134.59 Aligned_cols=151 Identities=26% Similarity=0.345 Sum_probs=100.0
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSV 406 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~ 406 (692)
++++...|.++.+.. ...+.-+ ..+.+|++|++.+|.++++|.+ ++.+++|+.|++.-|.+..+|..|
T Consensus 31 ~~s~ITrLtLSHNKl---------~~vppni--a~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKL---------TVVPPNI--AELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred chhhhhhhhcccCce---------eecCCcH--HHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCcccc
Confidence 556666666666651 1223334 5667777777777777777776 777777777777777677777777
Q ss_pred cCCCCCeEEecCCccce--ecChhhhccccCceeecccccccccccccCCCcccccccccccCCCccccccccccccccc
Q 048083 407 GNLRYLETLDVKHTKLR--YLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASL 484 (692)
Q Consensus 407 ~~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L 484 (692)
+.++.|+.||+.+|++. .+|..+..|.-|+.|+++.|.+.-+|..++++++||.| .+..+..+.+|.+++.+..|
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil---~lrdndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQIL---SLRDNDLLSLPKEIGDLTRL 175 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEE---eeccCchhhCcHHHHHHHHH
Confidence 77777777777776555 56766667777777777777766667777776666665 45555566666666666666
Q ss_pred cccccccc
Q 048083 485 RKLGVKCY 492 (692)
Q Consensus 485 ~~L~l~~~ 492 (692)
+.|.|.++
T Consensus 176 relhiqgn 183 (264)
T KOG0617|consen 176 RELHIQGN 183 (264)
T ss_pred HHHhcccc
Confidence 66666655
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.50 E-value=4.3e-14 Score=159.36 Aligned_cols=317 Identities=21% Similarity=0.172 Sum_probs=200.4
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCC--CCCCChhhhccccccceeeccCC-CccccC
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVY--KPKLSDHVIGKLLHLSYLGLRST-FIDSLP 403 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~l~~~~~~~l~~L~~L~l~~~-~i~~lp 403 (692)
+....|...+.++.. .....+..++.|++|-+.++. +..++..+|..++.|++|||++| .+..+|
T Consensus 521 ~~~~~rr~s~~~~~~------------~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKI------------EHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred chhheeEEEEeccch------------hhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 567888888887761 111112567789999999996 67788877888999999999976 679999
Q ss_pred ccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccC-CCcccccccccccCCCccccccccccccc
Q 048083 404 NSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFS-SLNNLQTLWGLSMGDDSLFNQTFDFTKLA 482 (692)
Q Consensus 404 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~-~l~~L~~L~~~~~~~~~~~~~~~~l~~l~ 482 (692)
.++++|.+|++|+++++.++.+|.++.++++|.+|++..+.....+.++. .+++|+.|....-..........++..+.
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 99999999999999999999999999999999999999887665544444 48888888655443221222112566777
Q ss_pred ccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEccccc--ccccccc-----C-cc
Q 048083 483 SLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALR--MFSAKTS-----S-FP 554 (692)
Q Consensus 483 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~--~~p~~~~-----~-l~ 554 (692)
+|+.+.+..........+..+.+-.+..+.+.+.++ ........+..+++|+.|.+.++.. ....+.. . +
T Consensus 669 ~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f- 746 (889)
T KOG4658|consen 669 HLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCF- 746 (889)
T ss_pred chhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhH-
Confidence 777777654433222333333311112333343332 2223455677788999999988762 1112211 1 3
Q ss_pred CccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEE--EecCCCccccce
Q 048083 555 RNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEW--TVQEAAMPRLRE 632 (692)
Q Consensus 555 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~ 632 (692)
+++.++.+.+|...... ....-.|+|+.|.+..+....+.++. ...+..++.+.+. +..+..+ -...+.|+++..
T Consensus 747 ~~l~~~~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i~~-~k~~~~l~~~i~~-f~~~~~l~~~~~l~~l~~i~~ 823 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDIIPK-LKALLELKELILP-FNKLEGLRMLCSLGGLPQLYW 823 (889)
T ss_pred HHHHHHHhhcccccccc-chhhccCcccEEEEecccccccCCCH-HHHhhhcccEEec-ccccccceeeecCCCCceeEe
Confidence 46667777777544322 22345689999999877665544432 1223334432222 1222222 223445777777
Q ss_pred eecccccccC-CCc----ChhhhhccCcEEEEecC
Q 048083 633 LEIRSCNKLK-PPE----GLRNLAATLKDIVLTNM 662 (692)
Q Consensus 633 L~l~~c~~l~-~p~----~~~~l~~sL~~L~i~~c 662 (692)
+.+.+ +.+. +.- -+..+|. +.++.+.+|
T Consensus 824 ~~l~~-~~l~~~~ve~~p~l~~~P~-~~~~~i~~~ 856 (889)
T KOG4658|consen 824 LPLSF-LKLEELIVEECPKLGKLPL-LSTLTIVGC 856 (889)
T ss_pred cccCc-cchhheehhcCcccccCcc-ccccceecc
Confidence 77776 4355 222 2356777 778888887
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=5.3e-14 Score=156.20 Aligned_cols=226 Identities=15% Similarity=0.127 Sum_probs=135.4
Q ss_pred CcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCcccc
Q 048083 328 SCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVG 407 (692)
Q Consensus 328 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~ 407 (692)
.++++.|.+.++.+.. ++..+ .++|+.|++++|.++.+|.. +. .+|+.|++++|.+..+|..+.
T Consensus 198 p~~L~~L~Ls~N~Lts---------LP~~l----~~nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 198 PEQITTLILDNNELKS---------LPENL----QGNIKTLYANSNQLTSIPAT-LP--DTIQEMELSINRITELPERLP 261 (754)
T ss_pred ccCCcEEEecCCCCCc---------CChhh----ccCCCEEECCCCccccCChh-hh--ccccEEECcCCccCcCChhHh
Confidence 3567888887776321 22222 24788888888888877765 43 368888888888888876653
Q ss_pred CCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCcccccccccccCCCcccccccccccccccccc
Q 048083 408 NLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKL 487 (692)
Q Consensus 408 ~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L 487 (692)
.+|+.|++++|+++.+|..+. ++|++|++++|.+..+|..+. .+|+. ++++.+....+|..+ .++|+.|
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~---L~Ls~N~Lt~LP~~l--~~sL~~L 330 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITH---LNVQSNSLTALPETL--PPGLKTL 330 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHH---HHhcCCccccCCccc--cccceec
Confidence 478888888888888877653 478888888887776665443 23333 356555433333332 2466666
Q ss_pred cccccc-hhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeecc
Q 048083 488 GVKCYS-QRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMS 565 (692)
Q Consensus 488 ~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~ 565 (692)
++.++. ..++..+. ++|+.|++++|.+.... ..+ .++|+.|+|++|. ..+|..+ +.+|+.|++++|
T Consensus 331 ~Ls~N~Lt~LP~~l~------~sL~~L~Ls~N~L~~LP-~~l--p~~L~~LdLs~N~Lt~LP~~l---~~sL~~LdLs~N 398 (754)
T PRK15370 331 EAGENALTSLPASLP------PELQVLDVSKNQITVLP-ETL--PPTITTLDVSRNALTNLPENL---PAALQIMQASRN 398 (754)
T ss_pred cccCCccccCChhhc------CcccEEECCCCCCCcCC-hhh--cCCcCEEECCCCcCCCCCHhH---HHHHHHHhhccC
Confidence 666551 12222221 36777777777554321 112 2467777777665 4555432 246777777777
Q ss_pred CCCCCch---hhhhcCCCCCeeeecCCccC
Q 048083 566 RLYWDPM---EALEKLCHLNILRIIGEAYE 592 (692)
Q Consensus 566 ~l~~~~~---~~l~~l~~L~~L~l~~~~~~ 592 (692)
++...+. ..+..++++..|++.+|.+.
T Consensus 399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 399 NLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6654321 11233466666666666654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=4.5e-14 Score=156.80 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=35.1
Q ss_pred EEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeeccccc
Q 048083 365 LTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIH 444 (692)
Q Consensus 365 L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~ 444 (692)
..+|+++++.++.+|.. +. .+|+.|++++|.+..+|..+. .+|++|++++|+++.+|..+. .+|+.|++++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~-Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPAC-IP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCcc-cc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 34444444444444433 21 244444555444444444332 244555555444444444332 234444444444
Q ss_pred cccccc
Q 048083 445 SAISWL 450 (692)
Q Consensus 445 ~~~~~~ 450 (692)
+..+|.
T Consensus 253 L~~LP~ 258 (754)
T PRK15370 253 ITELPE 258 (754)
T ss_pred cCcCCh
Confidence 444443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=1.8e-15 Score=129.81 Aligned_cols=158 Identities=25% Similarity=0.287 Sum_probs=131.3
Q ss_pred HHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhcc
Q 048083 353 LDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKA 432 (692)
Q Consensus 353 ~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l 432 (692)
++..| .+.++..|-|++|+++.+|+. +..+.+|+.|++.+|.++++|.+++.+++|+.|++..|.+..+|.+++.+
T Consensus 26 ~~gLf---~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 26 LPGLF---NMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred ccccc---chhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 45555 788999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccCceeeccccccc--ccccccCCCcccccccccccCCCccccccccccccccccccccccc-chhhHHHHHHHhhccCC
Q 048083 433 KKLQHLYLNWIHSA--ISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCY-SQRVIDSIAELVSRSTR 509 (692)
Q Consensus 433 ~~L~~L~l~~~~~~--~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~~~~~~~~ 509 (692)
+.|+.||+.+|.+. .+|..+.-++.|+. +.++.+...-+|.+++++++|+.|.+..+ .-.++..+..+. .
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlra---lyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt----~ 174 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRA---LYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLT----R 174 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHH---HHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHH----H
Confidence 99999999999877 46666655555444 47888876667788999998888888765 345666677766 7
Q ss_pred cceEEeeeccCC
Q 048083 510 LQSLKLVYAWRD 521 (692)
Q Consensus 510 L~~L~l~~~~~~ 521 (692)
|+.|++.+|..+
T Consensus 175 lrelhiqgnrl~ 186 (264)
T KOG0617|consen 175 LRELHIQGNRLT 186 (264)
T ss_pred HHHHhcccceee
Confidence 777777777443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=3.5e-13 Score=130.99 Aligned_cols=232 Identities=21% Similarity=0.244 Sum_probs=127.4
Q ss_pred hhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccC-CCccccCc-cccCCCCCeEEecCCccceecC-
Q 048083 350 STFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRS-TFIDSLPN-SVGNLRYLETLDVKHTKLRYLP- 426 (692)
Q Consensus 350 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp- 426 (692)
..+++..| +.+++||+|||++|.++.+.+.+|.+++.|-.|-+.+ |+|..+|. .|++|..|+.|.+.-|++..++
T Consensus 80 ~~iP~~aF--~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~ 157 (498)
T KOG4237|consen 80 SSIPPGAF--KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQ 157 (498)
T ss_pred ccCChhhc--cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhH
Confidence 33567777 7777777777777777777666677777776666655 67777774 4567777777777777666443
Q ss_pred hhhhccccCceeeccccccccccc-ccCCCcccccccccccCCCcccc-------------cccccccccc---------
Q 048083 427 DSIWKAKKLQHLYLNWIHSAISWL-NFSSLNNLQTLWGLSMGDDSLFN-------------QTFDFTKLAS--------- 483 (692)
Q Consensus 427 ~~~~~l~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~~~~-------------~~~~l~~l~~--------- 483 (692)
+.+..+++|..|.+..|.+..++. .+..+..++.+ .+..+..+. .|.+++.+.-
T Consensus 158 ~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl---hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~ 234 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL---HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYK 234 (498)
T ss_pred HHHHHhhhcchhcccchhhhhhccccccchhccchH---hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHH
Confidence 456777777777777666655544 33333333333 222221000 0001111100
Q ss_pred -------------cccc----ccccc--chhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-
Q 048083 484 -------------LRKL----GVKCY--SQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL- 543 (692)
Q Consensus 484 -------------L~~L----~l~~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~- 543 (692)
++.+ .-.+. .......|.+++ +|++|++++|.++.+....|.....+++|.|..+.
T Consensus 235 Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~----~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l 310 (498)
T KOG4237|consen 235 RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP----NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL 310 (498)
T ss_pred HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc----cceEeccCCCccchhhhhhhcchhhhhhhhcCcchH
Confidence 0000 00000 000111233333 66666666666666666666666666666666655
Q ss_pred ccc-cccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCcc
Q 048083 544 RMF-SAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAY 591 (692)
Q Consensus 544 ~~~-p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 591 (692)
..+ ...|..+ .+|+.|+|++|+++...+..|..+.+|..|.+-.|.+
T Consensus 311 ~~v~~~~f~~l-s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 311 EFVSSGMFQGL-SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred HHHHHHhhhcc-ccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 222 2233444 6666666666666666666666666666666655544
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.30 E-value=1.4e-13 Score=133.67 Aligned_cols=249 Identities=20% Similarity=0.152 Sum_probs=187.5
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecC-CCCCCCC
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEG-VYKPKLS 379 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~l~ 379 (692)
+.....+.+. .+ ....+|...|+.+++||.|++++|. |..+-++.| ++++.|..|-+.+ |+++++|
T Consensus 66 P~~tveirLd-qN--~I~~iP~~aF~~l~~LRrLdLS~N~--------Is~I~p~AF--~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 66 PPETVEIRLD-QN--QISSIPPGAFKTLHRLRRLDLSKNN--------ISFIAPDAF--KGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCcceEEEec-cC--CcccCChhhccchhhhceecccccc--------hhhcChHhh--hhhHhhhHHHhhcCCchhhhh
Confidence 4445555555 33 4566888889999999999999998 344678999 9999988877777 8899999
Q ss_pred hhhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceecCh-hhhccccCceeeccccccc-----------
Q 048083 380 DHVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHSA----------- 446 (692)
Q Consensus 380 ~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~----------- 446 (692)
..+|++|..|+.|.+.-|.+.-++ ..+..+++|..|.+.+|.+..++. ++..+..++++++.-|...
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 999999999999999999888776 457889999999999999998887 7889999999998777621
Q ss_pred --ccccccCCCcc-------------------ccccccc---ccCCCc-cccccc-cccccccccccccccc--chhhHH
Q 048083 447 --ISWLNFSSLNN-------------------LQTLWGL---SMGDDS-LFNQTF-DFTKLASLRKLGVKCY--SQRVID 498 (692)
Q Consensus 447 --~~~~~i~~l~~-------------------L~~L~~~---~~~~~~-~~~~~~-~l~~l~~L~~L~l~~~--~~~~~~ 498 (692)
..|..++..+. +..++.+ -.+.+. ...-|. .+.+|++|++|+++++ ...-..
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 11111111111 1111111 011111 111121 3789999999999988 455667
Q ss_pred HHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceeeeeccCC
Q 048083 499 SIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRL 567 (692)
Q Consensus 499 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l 567 (692)
+|.+.. .++.|.|..|.+.......|..+..|+.|+|.++. ...|..|..+ -+|.+|.|-.|.+
T Consensus 293 aFe~~a----~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~-~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 293 AFEGAA----ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL-FSLSTLNLLSNPF 358 (498)
T ss_pred hhcchh----hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc-ceeeeeehccCcc
Confidence 888888 99999999998888878889999999999999987 4446667777 8999999877654
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=2.2e-13 Score=140.45 Aligned_cols=90 Identities=23% Similarity=0.138 Sum_probs=56.1
Q ss_pred HhhhccCCcceEEEEeecCCCCC-----CCChhhhccccccceeeccCCCccc-------cCccccCCCCCeEEecCCcc
Q 048083 354 DKIISNRGLVLLTVLDLEGVYKP-----KLSDHVIGKLLHLSYLGLRSTFIDS-------LPNSVGNLRYLETLDVKHTK 421 (692)
Q Consensus 354 ~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~~l~~L~~L~l~~~~i~~-------lp~~~~~l~~L~~L~L~~~~ 421 (692)
...| ..+.+|++|+++++.++ .++.. +...+.|++|+++++.+.. ++..+.++++|+.|++++|.
T Consensus 16 ~~~~--~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 16 TELL--PKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHH--HHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 4555 66677888888888764 23334 5566677888887765542 23345567777777777776
Q ss_pred ce-ecChhhhcccc---Cceeeccccccc
Q 048083 422 LR-YLPDSIWKAKK---LQHLYLNWIHSA 446 (692)
Q Consensus 422 l~-~lp~~~~~l~~---L~~L~l~~~~~~ 446 (692)
+. ..+..+..+.+ |++|++++|...
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 65 33444444444 777777766543
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=1.4e-12 Score=134.54 Aligned_cols=259 Identities=17% Similarity=0.063 Sum_probs=132.3
Q ss_pred cCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCC-------ChhhhccccccceeeccCCC
Q 048083 326 DRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKL-------SDHVIGKLLHLSYLGLRSTF 398 (692)
Q Consensus 326 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-------~~~~~~~l~~L~~L~l~~~~ 398 (692)
..++.++.+.+.++..... -...+...+ ...+.|+.|+++++.+... +.. +..+.+|++|++++|.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~----~~~~i~~~l--~~~~~l~~l~l~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEE----AAKALASAL--RPQPSLKELCLSLNETGRIPRGLQSLLQG-LTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHhhccEEeecCCCCcHH----HHHHHHHHH--hhCCCceEEeccccccCCcchHHHHHHHH-HHhcCceeEEEccCCC
Confidence 3556677787777663221 112345556 6777788888888766521 223 6667788888888877
Q ss_pred cc-ccCccccCCCC---CeEEecCCcccee-----cChhhhcc-ccCceeecccccccccc-cccCCCcccccccccccC
Q 048083 399 ID-SLPNSVGNLRY---LETLDVKHTKLRY-----LPDSIWKA-KKLQHLYLNWIHSAISW-LNFSSLNNLQTLWGLSMG 467 (692)
Q Consensus 399 i~-~lp~~~~~l~~---L~~L~L~~~~l~~-----lp~~~~~l-~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~~~~~~ 467 (692)
+. ..+..+..+.+ |++|++++|.++. +...+..+ ++|+.|++++|.+.... ..+
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~--------------- 157 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL--------------- 157 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH---------------
Confidence 64 23333433443 8888888886652 23345556 77888888887655110 000
Q ss_pred CCcccccccccccccccccccccccc--hhhHHHHHHHhhccCCcceEEeeeccCCcc----ccCCCCCCCCccEEEEcc
Q 048083 468 DDSLFNQTFDFTKLASLRKLGVKCYS--QRVIDSIAELVSRSTRLQSLKLVYAWRDDY----SDIPFKAQANLQELYLRG 541 (692)
Q Consensus 468 ~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~ 541 (692)
+..+..+++|++|+++++. ......+......+++|+.|++++|.+... ....+..+++|+.|++++
T Consensus 158 -------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 158 -------AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred -------HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 0012222333333333331 000111111111122566666666544322 112344455666666666
Q ss_pred cc-cc-----ccccccCccCccceeeeeccCCCCCch----hhhhcCCCCCeeeecCCccCccEEE---EecCCC-Cccc
Q 048083 542 AL-RM-----FSAKTSSFPRNLKIVTLSMSRLYWDPM----EALEKLCHLNILRIIGEAYEGKKMT---CQAGGF-PQLR 607 (692)
Q Consensus 542 ~~-~~-----~p~~~~~l~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~-~~L~ 607 (692)
+. .. +...+....+.|++|++++|.++.... ..+..+++|+.+++++|.+..+... .....+ +.|+
T Consensus 231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchh
Confidence 54 11 111111101577888888777653222 2344566788888877777643211 011123 5666
Q ss_pred EEEecc
Q 048083 608 VLKLWN 613 (692)
Q Consensus 608 ~L~l~~ 613 (692)
+|++.+
T Consensus 311 ~~~~~~ 316 (319)
T cd00116 311 SLWVKD 316 (319)
T ss_pred hcccCC
Confidence 666654
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=5.2e-09 Score=123.91 Aligned_cols=249 Identities=12% Similarity=0.126 Sum_probs=152.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc-chHHHHHHHHHHhhhhhhhc-----------cCCC
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA-KFRDVLIDILQQIDDETLVE-----------ASAP 69 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~-----------~~~~ 69 (692)
..+++.|.|++|.||||++.....+ ++.++|+++.... +.......++..+....... ....
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 4579999999999999999998854 2268899986543 55566666666664221110 0012
Q ss_pred hhHHHHHHHHHhc--cccEEEEEeCCCCccc------cccc--CCCCc-----ccc------------cCCccccC----
Q 048083 70 EADLVSSLTTLLK--EISYLIVVEDVETPQV------CNPN--NIPPE-----AEA------------AGPTLHLS---- 118 (692)
Q Consensus 70 ~~~~~~~l~~~L~--~k~~LlVLDdv~~~~~------~~~~--~~~~~-----~~~------------~~~~~~l~---- 118 (692)
.......+...+. +.+++|||||+...+. +..+ ..|.+ ... .+...++.
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l 184 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhC
Confidence 2223333333333 6799999999977431 1111 23333 000 01112344
Q ss_pred CCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHHHh------
Q 048083 119 RLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKEAKYWSKVIEHA------ 192 (692)
Q Consensus 119 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~~~~w~~~l~~l------ 192 (692)
+|+.+|+.++|....... --.+...+|.+.|+|+|+++..++..+...... .......+
T Consensus 185 ~f~~~e~~~ll~~~~~~~--------------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 249 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSP--------------IEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINAS 249 (903)
T ss_pred CCCHHHHHHHHHhccCCC--------------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCch
Confidence 899999999997654111 113456789999999999999998776543310 00000111
Q ss_pred --c---CCCCCCCCCccchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHHHHHhccceeeeeccCCCC
Q 048083 193 --D---NSRSGSGTGSGLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFEELVIRNLIQVTKWRLDGS 267 (692)
Q Consensus 193 --~---~~~s~~~L~~~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~L~~~sLi~~~~~~~~~~ 267 (692)
. ....+..+|++.++.++..|+++. ++....-. +. ..+.+...++.|.+.+++..... +.
T Consensus 250 ~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~------l~---~~~~~~~~L~~l~~~~l~~~~~~---~~ 314 (903)
T PRK04841 250 HLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVR------VT---GEENGQMRLEELERQGLFIQRMD---DS 314 (903)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHH------Hc---CCCcHHHHHHHHHHCCCeeEeec---CC
Confidence 0 022357889999999999999862 33222211 11 23346788999999998653221 11
Q ss_pred ceEEEcChHHHHHHHHhhh
Q 048083 268 PKMCRMPSAVYRVFSKEAE 286 (692)
Q Consensus 268 ~~~~~~h~lv~~~~~~~~~ 286 (692)
...|++|++++++.+....
T Consensus 315 ~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 315 GEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred CCEEehhHHHHHHHHHHHH
Confidence 2358889999999988763
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1e-10 Score=115.79 Aligned_cols=165 Identities=16% Similarity=0.072 Sum_probs=88.7
Q ss_pred CCChhhhccccccceeeccCCCccccCc--cccCCCCCeEEecCCccce---ecChhhhccccCceeecccccccccccc
Q 048083 377 KLSDHVIGKLLHLSYLGLRSTFIDSLPN--SVGNLRYLETLDVKHTKLR---YLPDSIWKAKKLQHLYLNWIHSAISWLN 451 (692)
Q Consensus 377 ~l~~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 451 (692)
++-.. -+++.+|+...|+++.+...+. ....|++++.|||+.|-+. .+......+++|+.|+++.|.+.....+
T Consensus 112 ki~ak-Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 112 KIAAK-QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred HHHHH-hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 34444 4567888888888887766663 4567888888888888433 3445566788888888888765432211
Q ss_pred cCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCC
Q 048083 452 FSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQ 531 (692)
Q Consensus 452 i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 531 (692)
. .-..+++|++|.++.|+-. ...+..+...|++|+.|.+..|...........-+
T Consensus 191 ~------------------------~~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~ 245 (505)
T KOG3207|consen 191 N------------------------TTLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL 245 (505)
T ss_pred c------------------------chhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhh
Confidence 0 0113455566666666332 33333333344566666666663222222222233
Q ss_pred CCccEEEEcccc-cccc--ccccCccCccceeeeeccCCC
Q 048083 532 ANLQELYLRGAL-RMFS--AKTSSFPRNLKIVTLSMSRLY 568 (692)
Q Consensus 532 ~~L~~L~L~~~~-~~~p--~~~~~l~~~L~~L~L~~~~l~ 568 (692)
..|++|+|+++. -.++ .....+ +.|..|+++.|.+.
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l-~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTL-PGLNQLNLSSTGIA 284 (505)
T ss_pred hHHhhccccCCcccccccccccccc-cchhhhhccccCcc
Confidence 345555555443 2222 123333 44444455444443
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.93 E-value=2.5e-08 Score=99.83 Aligned_cols=161 Identities=23% Similarity=0.282 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHH----H
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLT----T 79 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~----~ 79 (692)
.+++|+|++|+||||+|+.++++... ..+ ..+|+. ....+..+++..+...++.... ..........+. .
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDFLIE 117 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHHHH
Confidence 37899999999999999999998331 111 122332 2234566778788877754322 122222223333 3
Q ss_pred Hh-ccccEEEEEeCCCCcc--ccccc----CCCC--c-----------------c--------cccCCccccCCCCHHHH
Q 048083 80 LL-KEISYLIVVEDVETPQ--VCNPN----NIPP--E-----------------A--------EAAGPTLHLSRLNKEES 125 (692)
Q Consensus 80 ~L-~~k~~LlVLDdv~~~~--~~~~~----~~~~--~-----------------~--------~~~~~~~~l~~L~~~ea 125 (692)
.. .++++++|+||++... .++.+ .+.. . . ......+++++++.+|.
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 22 5678999999998843 22211 1100 0 0 00122347999999999
Q ss_pred HHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 048083 126 WKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLL 177 (692)
Q Consensus 126 ~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l 177 (692)
.+++....... +.. ....--++..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~---g~~----~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERA---GNR----DAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHc---CCC----CCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99987765322 210 1112234678999999999999999888765
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=1.3e-10 Score=118.58 Aligned_cols=193 Identities=20% Similarity=0.199 Sum_probs=151.6
Q ss_pred cceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecc
Q 048083 362 LVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLN 441 (692)
Q Consensus 362 ~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 441 (692)
+..-...||+.|.+..+|.. ++.+..|+.+.|+.|.+-.+|..+.++..|.+|+|+.|+++.+|..++.|+ |+.|-++
T Consensus 74 ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 33445578889999999998 888999999999999999999999999999999999999999999998887 8999999
Q ss_pred cccccccccccCCCcccccccccccCCCccccccccccccccccccccccc-chhhHHHHHHHhhccCCcceEEeeeccC
Q 048083 442 WIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCY-SQRVIDSIAELVSRSTRLQSLKLVYAWR 520 (692)
Q Consensus 442 ~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 520 (692)
+|.+..+|+.++.+..| ..++++.|....+|..++.+.+|+.|.+..+ ...++..+..+ .|.+||+++|.+
T Consensus 152 NNkl~~lp~~ig~~~tl---~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-----pLi~lDfScNki 223 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTL---AHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-----PLIRLDFSCNKI 223 (722)
T ss_pred cCccccCCcccccchhH---HHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-----ceeeeecccCce
Confidence 99999999998854444 4448888877778888999999999988866 45566666644 688999998855
Q ss_pred CccccCCCCCCCCccEEEEcccc-ccccccccCcc--Cccceeeeecc
Q 048083 521 DDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFP--RNLKIVTLSMS 565 (692)
Q Consensus 521 ~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~--~~L~~L~L~~~ 565 (692)
.. .+..|..+++|++|-|+++. +.-|..++..+ -=.++|+..-|
T Consensus 224 s~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 SY-LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ee-cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 44 45677888888888888877 55555544321 22456666666
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.85 E-value=1.1e-07 Score=100.81 Aligned_cols=264 Identities=14% Similarity=0.151 Sum_probs=154.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccc--cceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAK--RAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL 81 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 81 (692)
..+.|+|++|+|||+++++++++ ....... ++++++....+...++..+++++.....+....+..+..+.+.+.+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 133 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL 133 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998 5444322 4556666566777888899998876322223345566677777777
Q ss_pred c--cccEEEEEeCCCCcc------ccccc-----CCCC-c--------------------c-cccCCccccCCCCHHHHH
Q 048083 82 K--EISYLIVVEDVETPQ------VCNPN-----NIPP-E--------------------A-EAAGPTLHLSRLNKEESW 126 (692)
Q Consensus 82 ~--~k~~LlVLDdv~~~~------~~~~~-----~~~~-~--------------------~-~~~~~~~~l~~L~~~ea~ 126 (692)
. ++.++||||+++... .+..+ ..+. . . ......+.+++++.++..
T Consensus 134 ~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~ 213 (394)
T PRK00411 134 DERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIF 213 (394)
T ss_pred HhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHH
Confidence 5 456899999998732 11111 1111 1 0 001124588999999999
Q ss_pred HHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhh--c---CCC---hHHHHHHHHHhcC---C
Q 048083 127 KLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLL--S---TKE---AKYWSKVIEHADN---S 195 (692)
Q Consensus 127 ~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l--~---~~~---~~~w~~~l~~l~~---~ 195 (692)
+.+...+......+. .....++.+++......|..+.|+.++-.+. + +.. .+.+..++++... .
T Consensus 214 ~il~~r~~~~~~~~~-----~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~ 288 (394)
T PRK00411 214 DILKDRVEEGFYPGV-----VDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLS 288 (394)
T ss_pred HHHHHHHHhhcccCC-----CCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHH
Confidence 999876521100010 2222333333333333566777777664321 1 111 5666666666533 3
Q ss_pred CCCCCCCccchhHHhhhcCCCC--CCccchhhHHHH--HHhcCC-CCCchHHHHHHHHHHHHhccceeeeec--cCCCCc
Q 048083 196 RSGSGTGSGLKPFFLYVGMFPR--GFEIPVRRLIHL--WCAEGF-AAPIDTDLAEMYFEELVIRNLIQVTKW--RLDGSP 268 (692)
Q Consensus 196 ~s~~~L~~~~k~~fl~~a~f~~--~~~i~~~~l~~~--w~~~g~-~~~~~~~~~~~~~~~L~~~sLi~~~~~--~~~~~~ 268 (692)
..+..||.+.|..+..++...+ ...+...++... ..++.. +.+........++..|.+.++|+.... +..|+.
T Consensus 289 ~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~ 368 (394)
T PRK00411 289 EVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTRYSGKGGRGRT 368 (394)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCe
Confidence 4567888888877666653321 123455544432 222211 112244667889999999999986542 334555
Q ss_pred eEEEcC
Q 048083 269 KMCRMP 274 (692)
Q Consensus 269 ~~~~~h 274 (692)
..++.+
T Consensus 369 ~~~~~~ 374 (394)
T PRK00411 369 RLISLS 374 (394)
T ss_pred EEEEec
Confidence 566554
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=2.6e-09 Score=96.86 Aligned_cols=81 Identities=27% Similarity=0.396 Sum_probs=18.5
Q ss_pred ceEEEEeecCCCCCCCChhhhc-cccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhh-hccccCceeec
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIG-KLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSI-WKAKKLQHLYL 440 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~~L~l 440 (692)
..++.|+|.++.++.+.. ++ .+.+|+.|++++|.|..++. +..+++|++|++++|.|+.++..+ ..+++|++|++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S----TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccc--hhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 345556666655554432 33 35555566666665555542 455555666666666555554433 24555666666
Q ss_pred cccccc
Q 048083 441 NWIHSA 446 (692)
Q Consensus 441 ~~~~~~ 446 (692)
++|.+.
T Consensus 96 ~~N~I~ 101 (175)
T PF14580_consen 96 SNNKIS 101 (175)
T ss_dssp TTS---
T ss_pred cCCcCC
Confidence 555543
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.6e-10 Score=108.54 Aligned_cols=178 Identities=21% Similarity=0.195 Sum_probs=91.3
Q ss_pred CCeEEecCCccce--ecChhhhccccCceeecccccccccccccCCCcccccccccccCCCccccccccccccccccccc
Q 048083 411 YLETLDVKHTKLR--YLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLG 488 (692)
Q Consensus 411 ~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ 488 (692)
.||+|||++..|+ .+...+..|++|+.|.+.++.+... ... .+++-.+|+.|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~----------------------I~~---~iAkN~~L~~ln 240 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP----------------------IVN---TIAKNSNLVRLN 240 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH----------------------HHH---HHhccccceeec
Confidence 3666777766555 4444556666666666555433210 111 455566777777
Q ss_pred ccccchhhHHHHHHHhhccCCcceEEeeeccCCcc-ccCCCCCC-CCccEEEEccccccccc-----cccCccCccceee
Q 048083 489 VKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDY-SDIPFKAQ-ANLQELYLRGALRMFSA-----KTSSFPRNLKIVT 561 (692)
Q Consensus 489 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~-~~L~~L~L~~~~~~~p~-----~~~~l~~~L~~L~ 561 (692)
++.+.......+.-+.+.|+.|..|+++||..... +-..+.+- ++|+.|+|+|+...+-. -.... ++|.+||
T Consensus 241 lsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc-p~l~~LD 319 (419)
T KOG2120|consen 241 LSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC-PNLVHLD 319 (419)
T ss_pred cccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC-Cceeeec
Confidence 77775555555566666777888999999864432 11122222 35666666665422111 11122 5556666
Q ss_pred eeccC-CCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccC
Q 048083 562 LSMSR-LYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNL 614 (692)
Q Consensus 562 L~~~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 614 (692)
|+.|. ++...+..+.+++.|++|.++.|-.............|+|.+|++.+|
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 65552 333344445555555555554443222222222334445555555443
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.79 E-value=3.2e-10 Score=111.71 Aligned_cols=284 Identities=19% Similarity=0.164 Sum_probs=161.8
Q ss_pred eEEEEeecCCCCCCC--ChhhhccccccceeeccCCC-ccc--cCccccCCCCCeEEecCCc-cceec--ChhhhccccC
Q 048083 364 LLTVLDLEGVYKPKL--SDHVIGKLLHLSYLGLRSTF-IDS--LPNSVGNLRYLETLDVKHT-KLRYL--PDSIWKAKKL 435 (692)
Q Consensus 364 ~L~~L~L~~~~~~~l--~~~~~~~l~~L~~L~l~~~~-i~~--lp~~~~~l~~L~~L~L~~~-~l~~l--p~~~~~l~~L 435 (692)
.||.|.+.|+.-... ...+...+++++.|.+.++. ++. +-..-..|.+|++|++..| .++.. -.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466677777653211 11114456666667666653 111 1111235677777777776 55522 2234456777
Q ss_pred ceeecccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEe
Q 048083 436 QHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKL 515 (692)
Q Consensus 436 ~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 515 (692)
.+|+++.|....- .+++. -..+..+++++...+|.+.....+..+...+..+.++++
T Consensus 219 ~~lNlSwc~qi~~-------~gv~~----------------~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 219 KYLNLSWCPQISG-------NGVQA----------------LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred HHhhhccCchhhc-------CcchH----------------HhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 7777776643211 00110 133444455555556655555555555545555666665
Q ss_pred eecc-CCccccC-CCCCCCCccEEEEccccccccccc----cCccCccceeeeeccC-CCCCchhhhh-cCCCCCeeeec
Q 048083 516 VYAW-RDDYSDI-PFKAQANLQELYLRGALRMFSAKT----SSFPRNLKIVTLSMSR-LYWDPMEALE-KLCHLNILRII 587 (692)
Q Consensus 516 ~~~~-~~~~~~~-~l~~~~~L~~L~L~~~~~~~p~~~----~~l~~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~l~ 587 (692)
..|. .++.... .-..+..|+.|..+++...-...+ .+- .+|+.|-+..|+ ++...+..++ +.+.|+.+++.
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~-~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC-HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC-CceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 5552 2222211 122345677777776653211111 122 678888888874 4554555554 46788888887
Q ss_pred CCccCccE-EEEecCCCCcccEEEeccCCCCcEE-----EecCCCccccceeecccccccC--CCcChhhhhccCcEEEE
Q 048083 588 GEAYEGKK-MTCQAGGFPQLRVLKLWNLSSLEEW-----TVQEAAMPRLRELEIRSCNKLK--PPEGLRNLAATLKDIVL 659 (692)
Q Consensus 588 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~--~p~~~~~l~~sL~~L~i 659 (692)
.+....+. +.....+++.|++|.+++|..+++- .....++..|+.+++.+|+.++ .-..+...++ |+.+++
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~-Leri~l 433 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN-LERIEL 433 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc-cceeee
Confidence 66554433 3333457888999998888776654 2333456788899999999888 6667777888 999998
Q ss_pred ecCchHHHHHHhh
Q 048083 660 TNMPSTFGEEAQR 672 (692)
Q Consensus 660 ~~c~~~~~~~~~~ 672 (692)
-+|..-+.+.++.
T Consensus 434 ~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 434 IDCQDVTKEAISR 446 (483)
T ss_pred echhhhhhhhhHH
Confidence 8887555555544
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=4.4e-09 Score=95.31 Aligned_cols=130 Identities=25% Similarity=0.244 Sum_probs=55.0
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSV 406 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~ 406 (692)
++.++|.|.+.++.+ ..++..- ..+.+|++|++++|.++++.. +..+++|+.|++++|.|..++..+
T Consensus 17 n~~~~~~L~L~~n~I---------~~Ie~L~--~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQI---------STIENLG--ATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp ----------------------------S----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHH
T ss_pred ccccccccccccccc---------ccccchh--hhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccch
Confidence 566789999998872 1223322 367899999999999998864 788999999999999999987655
Q ss_pred -cCCCCCeEEecCCccceecC--hhhhccccCceeeccccccccccc----ccCCCcccccccccccCCC
Q 048083 407 -GNLRYLETLDVKHTKLRYLP--DSIWKAKKLQHLYLNWIHSAISWL----NFSSLNNLQTLWGLSMGDD 469 (692)
Q Consensus 407 -~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~----~i~~l~~L~~L~~~~~~~~ 469 (692)
..+++|++|++++|+|..+. ..+..+++|+.|++.+|+....+. -+..+++|+.|+.-.+...
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence 46999999999999887653 467889999999999998874432 2445666666655555443
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.8e-09 Score=105.72 Aligned_cols=201 Identities=19% Similarity=0.171 Sum_probs=117.3
Q ss_pred hhccccCceeeccccccccccc--ccCCCcccccccccccCCCcccc---cccccccccccccccccccchhhH-HHHH-
Q 048083 429 IWKAKKLQHLYLNWIHSAISWL--NFSSLNNLQTLWGLSMGDDSLFN---QTFDFTKLASLRKLGVKCYSQRVI-DSIA- 501 (692)
Q Consensus 429 ~~~l~~L~~L~l~~~~~~~~~~--~i~~l~~L~~L~~~~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~-~~l~- 501 (692)
-.++.+|+...|+.+.....+. ....+++++.| +++.+-... ...-...|++|+.|+++.+.-..+ .+..
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~L---dLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDL---DLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceee---cchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 4568888888888877654442 23344444444 666653111 011245678888888876611110 0000
Q ss_pred -HHhhccCCcceEEeeeccCCcc-ccCCCCCCCCccEEEEccccccccccc-cCccCccceeeeeccCCCC-Cchhhhhc
Q 048083 502 -ELVSRSTRLQSLKLVYAWRDDY-SDIPFKAQANLQELYLRGALRMFSAKT-SSFPRNLKIVTLSMSRLYW-DPMEALEK 577 (692)
Q Consensus 502 -~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~L~~~~~~~p~~~-~~l~~~L~~L~L~~~~l~~-~~~~~l~~ 577 (692)
.+. .|+.|.++.|+.+.- +...+..+|+|+.|.|+++...+.... ...+..|++|+|++|++.. ......+.
T Consensus 194 ~~l~----~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 194 LLLS----HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred hhhh----hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence 233 777888888876533 334456678888888887741111111 1223778888888886643 33445677
Q ss_pred CCCCCeeeecCCccCccEEEEe-----cCCCCcccEEEeccCCCCcEEEec--CCCccccceeeccc
Q 048083 578 LCHLNILRIIGEAYEGKKMTCQ-----AGGFPQLRVLKLWNLSSLEEWTVQ--EAAMPRLRELEIRS 637 (692)
Q Consensus 578 l~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~l~~ 637 (692)
+|.|+.|+++.+.+.....+.. ...||+|++|.+.. +.+.+|+.- ...+++|+.|.+..
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence 8888888888776655443322 35688888888876 345555532 23456777776554
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.75 E-value=6e-09 Score=110.63 Aligned_cols=172 Identities=27% Similarity=0.330 Sum_probs=117.8
Q ss_pred CCcceEEEEeecCCCCCCCChhhhcccc-ccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCcee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLL-HLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHL 438 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 438 (692)
...+.++.|++.++.+.++++. ...+. +|+.|++++|.+..+|..++.+++|+.|++++|+++.+|.....+++|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 4567899999999999999887 77774 899999999999999877899999999999999999998877788999999
Q ss_pred ecccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccc-hhhHHHHHHHhhccCCcceEEeee
Q 048083 439 YLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYS-QRVIDSIAELVSRSTRLQSLKLVY 517 (692)
Q Consensus 439 ~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~ 517 (692)
++++|.+..+|..+.....|+.| .++.+.....+..+.++.++..+.+..+. ...+..+..+. +++.|++++
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l---~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~----~l~~L~~s~ 264 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEEL---DLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS----NLETLDLSN 264 (394)
T ss_pred eccCCccccCchhhhhhhhhhhh---hhcCCcceecchhhhhcccccccccCCceeeeccchhcccc----ccceecccc
Confidence 99999988888766555555555 66666444444456666666666544331 11123333333 455555555
Q ss_pred ccCCccccCCCCCCCCccEEEEcc
Q 048083 518 AWRDDYSDIPFKAQANLQELYLRG 541 (692)
Q Consensus 518 ~~~~~~~~~~l~~~~~L~~L~L~~ 541 (692)
|..+.... +....+|+.|++++
T Consensus 265 n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 265 NQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred cccccccc--ccccCccCEEeccC
Confidence 54433322 34444444444444
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.74 E-value=7.7e-10 Score=106.71 Aligned_cols=223 Identities=18% Similarity=0.177 Sum_probs=132.9
Q ss_pred HHhhhccCCcceEEEEeecCCCCC-----CCChhhhccccccceeeccCCC----ccccCc-------cccCCCCCeEEe
Q 048083 353 LDKIISNRGLVLLTVLDLEGVYKP-----KLSDHVIGKLLHLSYLGLRSTF----IDSLPN-------SVGNLRYLETLD 416 (692)
Q Consensus 353 ~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~~l~~L~~L~l~~~~----i~~lp~-------~~~~l~~L~~L~ 416 (692)
..... ..+..++.++|++|.+. .+... +.+.++|+.-++++-. ..++|+ .+-.+++|++||
T Consensus 22 v~~~~--~~~~s~~~l~lsgnt~G~EAa~~i~~~-L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 22 VEEEL--EPMDSLTKLDLSGNTFGTEAARAIAKV-LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred HHHHh--cccCceEEEeccCCchhHHHHHHHHHH-HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 34445 67888888888888875 22333 6677788888887632 223333 245678999999
Q ss_pred cCCccce--ec---ChhhhccccCceeecccccccccccc-cCCCcccccccccccCCCccccccccccccccccccccc
Q 048083 417 VKHTKLR--YL---PDSIWKAKKLQHLYLNWIHSAISWLN-FSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVK 490 (692)
Q Consensus 417 L~~~~l~--~l---p~~~~~l~~L~~L~l~~~~~~~~~~~-i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 490 (692)
||+|-+. .+ -.-+..+..|++|+|.+|.+...--. ++ ..|..| ..+. ..+.-+.||.+...
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l---~~~k--------k~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFEL---AVNK--------KAASKPKLRVFICG 165 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHH---HHHh--------ccCCCcceEEEEee
Confidence 9999554 22 23467788899999988876522110 11 112222 1100 23344566666665
Q ss_pred cc--chhhHHHHHHHhhccCCcceEEeeeccCCcc----ccCCCCCCCCccEEEEcccc------ccccccccCccCccc
Q 048083 491 CY--SQRVIDSIAELVSRSTRLQSLKLVYAWRDDY----SDIPFKAQANLQELYLRGAL------RMFSAKTSSFPRNLK 558 (692)
Q Consensus 491 ~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~~~------~~~p~~~~~l~~~L~ 558 (692)
.+ .+.....+....+.++.|+.+.+..|.+... ....+..+++|+.|+|+.+. ..+...+..+ ++|+
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-~~L~ 244 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-PHLR 244 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-chhe
Confidence 55 1222223333333445888888888865443 23456778888888888764 2233445556 6888
Q ss_pred eeeeeccCCCCCchhhhh-----cCCCCCeeeecCCccC
Q 048083 559 IVTLSMSRLYWDPMEALE-----KLCHLNILRIIGEAYE 592 (692)
Q Consensus 559 ~L~L~~~~l~~~~~~~l~-----~l~~L~~L~l~~~~~~ 592 (692)
.|++++|.+.......+. ..|+|+.|.+.+|.+.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 888888877655433322 3566777777666554
No 38
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.72 E-value=7.1e-07 Score=93.68 Aligned_cols=250 Identities=14% Similarity=0.153 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhccc------ccceEEecCccchHHHHHHHHHHhhh--hhhhccCCChhHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFA------KRAWIRVRGDAKFRDVLIDILQQIDD--ETLVEASAPEADLVS 75 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~------~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~~ 75 (692)
..+.|+|++|+|||+++++++++ ...... ..+|+++....+...++..|++++.. ...+....+..+...
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 118 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFR 118 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHH
Confidence 46899999999999999999987 433222 24566766666677888889988852 111112223445556
Q ss_pred HHHHHhc--cccEEEEEeCCCCcc-c----cccc-CC------CCc----------------------ccccCCccccCC
Q 048083 76 SLTTLLK--EISYLIVVEDVETPQ-V----CNPN-NI------PPE----------------------AEAAGPTLHLSR 119 (692)
Q Consensus 76 ~l~~~L~--~k~~LlVLDdv~~~~-~----~~~~-~~------~~~----------------------~~~~~~~~~l~~ 119 (692)
.+.+.+. +++++||||+++... . +..+ .+ +.. .......+++++
T Consensus 119 ~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p 198 (365)
T TIGR02928 119 RLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPP 198 (365)
T ss_pred HHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCC
Confidence 6666663 567899999998751 1 1111 11 101 001113468899
Q ss_pred CCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCc-hHHHHHhhhh----c-CCC---hHHHHHHHH
Q 048083 120 LNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLP-LHISLLGGLL----S-TKE---AKYWSKVIE 190 (692)
Q Consensus 120 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~g~~l----~-~~~---~~~w~~~l~ 190 (692)
.+.++-.+++..++..... +. ...++..+....++....|.| .|+.++-... . +.. .+....+.+
T Consensus 199 ~~~~e~~~il~~r~~~~~~-~~-----~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~ 272 (365)
T TIGR02928 199 YDAEELRDILENRAEKAFY-DG-----VLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQE 272 (365)
T ss_pred CCHHHHHHHHHHHHHhhcc-CC-----CCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 9999999999887631100 10 223333345556677777877 4433332211 1 111 455555554
Q ss_pred HhcC---CCCCCCCCccchhHHhhhcCCC--CCCccchhhHHHH---HHhcCCCCCchHHHHHHHHHHHHhccceeeee
Q 048083 191 HADN---SRSGSGTGSGLKPFFLYVGMFP--RGFEIPVRRLIHL---WCAEGFAAPIDTDLAEMYFEELVIRNLIQVTK 261 (692)
Q Consensus 191 ~l~~---~~s~~~L~~~~k~~fl~~a~f~--~~~~i~~~~l~~~---w~~~g~~~~~~~~~~~~~~~~L~~~sLi~~~~ 261 (692)
.... ...+..||.+.+..+..++..- ++..+...++... +...--+.+.......+++..|...|+|....
T Consensus 273 ~~~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 273 KIEKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 4432 3355677888776666655221 3334555555552 22221133456677889999999999999764
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=5.6e-10 Score=114.02 Aligned_cols=150 Identities=24% Similarity=0.259 Sum_probs=84.2
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLY 439 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 439 (692)
..+..|..|.|..|.+..+|.. ++++..|.||+|+.|.+..+|..+..|+ |+.|-+++|+++.+|..++.+..|.+|+
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhh
Confidence 3444555555555555556655 6666666666666666666665544332 5566666666666666666566666666
Q ss_pred cccccccccccccCCCcccccccccccCCCccccccccccccccccccccccc-chhhHHHHHHHhhccCCcceEEeeec
Q 048083 440 LNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCY-SQRVIDSIAELVSRSTRLQSLKLVYA 518 (692)
Q Consensus 440 l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~ 518 (692)
.+.|.+..+|..++.+.+|+.| .+..+....+|.+++.|+ |.+|+++++ ...++-.|.+|. .|+.|-|.+|
T Consensus 173 ~s~nei~slpsql~~l~slr~l---~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~----~Lq~l~LenN 244 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDL---NVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMR----HLQVLQLENN 244 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHH---HHhhhhhhhCCHHHhCCc-eeeeecccCceeecchhhhhhh----hheeeeeccC
Confidence 6666655555555555555444 444444455555555443 555666555 334455555555 6666666666
Q ss_pred c
Q 048083 519 W 519 (692)
Q Consensus 519 ~ 519 (692)
.
T Consensus 245 P 245 (722)
T KOG0532|consen 245 P 245 (722)
T ss_pred C
Confidence 3
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=1.5e-08 Score=107.67 Aligned_cols=191 Identities=22% Similarity=0.277 Sum_probs=124.7
Q ss_pred EEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCC-CCeEEecCCccceecChhhhccccCceeecccccc
Q 048083 367 VLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLR-YLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHS 445 (692)
Q Consensus 367 ~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 445 (692)
.|++..+.+...... +..+..+..|++.++.+..+|+....+. +|+.|++++|.+..+|..++.+++|+.|++++|.+
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 577777777544444 6677889999999999999998888775 99999999999999988899999999999999998
Q ss_pred cccccccCCCcccccccccccCCCccccccccccccccccccccccc-chhhHHHHHHHhhccCCcceEEeeeccCCccc
Q 048083 446 AISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCY-SQRVIDSIAELVSRSTRLQSLKLVYAWRDDYS 524 (692)
Q Consensus 446 ~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 524 (692)
..+|...+.+.+|+.| +++++....+|..+..+.+|++|.+.++ .......+
T Consensus 176 ~~l~~~~~~~~~L~~L---~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~------------------------ 228 (394)
T COG4886 176 SDLPKLLSNLSNLNNL---DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSL------------------------ 228 (394)
T ss_pred hhhhhhhhhhhhhhhe---eccCCccccCchhhhhhhhhhhhhhcCCcceecchhh------------------------
Confidence 8887765555555555 6666654444433434444555555544 22333333
Q ss_pred cCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccC
Q 048083 525 DIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYE 592 (692)
Q Consensus 525 ~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 592 (692)
..+.++..|.+.++. ..++..+..+ ++++.|++++|.++.... ++.+.+|+.|+++++.+.
T Consensus 229 ----~~~~~l~~l~l~~n~~~~~~~~~~~l-~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 229 ----SNLKNLSGLELSNNKLEDLPESIGNL-SNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ----hhcccccccccCCceeeeccchhccc-cccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 333444444444333 2224444454 556666666666654332 566666666666655443
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=6.2e-09 Score=98.09 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=92.5
Q ss_pred cccccccccccccccc-chhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCcc
Q 048083 477 DFTKLASLRKLGVKCY-SQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFP 554 (692)
Q Consensus 477 ~l~~l~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~ 554 (692)
.+.....|..++++++ ...+..++.-++ .++.|+++.|++.... .+..+++|+.|+|+++. ..+..|-..+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~P----kir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL- 351 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAP----KLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKL- 351 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhcc----ceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhh-
Confidence 3455667778888876 334455555555 8888888888765543 37778888888888877 6666677777
Q ss_pred CccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCC
Q 048083 555 RNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLS 615 (692)
Q Consensus 555 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 615 (692)
-|+++|.|++|.+.. ...+.+|-+|..|++++|++....-...++++|.|+.+.+.++|
T Consensus 352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 888888888887653 34567777888888888877654444456777777777777654
No 42
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.61 E-value=8.2e-08 Score=84.40 Aligned_cols=90 Identities=22% Similarity=0.341 Sum_probs=67.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhc-----ccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRH-----FAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSL 77 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 77 (692)
-+++.|+|.+|+|||+++++++++ .... -..++|+.+....+...+...++..+..... ...+..+..+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--SRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--STS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--ccCCHHHHHHHH
Confidence 367899999999999999999998 4332 2346789888777889999999999987655 345667777888
Q ss_pred HHHhccccE-EEEEeCCCCc
Q 048083 78 TTLLKEISY-LIVVEDVETP 96 (692)
Q Consensus 78 ~~~L~~k~~-LlVLDdv~~~ 96 (692)
.+.+...+. +||+||++..
T Consensus 80 ~~~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHH
T ss_pred HHHHHhcCCeEEEEeChHhc
Confidence 888876655 9999998753
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=1.3e-08 Score=96.00 Aligned_cols=174 Identities=19% Similarity=0.180 Sum_probs=77.8
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc------------------------cccCCCCCeEE
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN------------------------SVGNLRYLETL 415 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~------------------------~~~~l~~L~~L 415 (692)
.-+++|..+.++.|.-..+-.- ...=+.|..+..+++.+...|. .+...+.|++|
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~-~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDI-ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred HHhhhhheeeeeccchhheece-eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 4456666677777664433221 1122456666665543322111 12234456666
Q ss_pred ecCCccceecChhhhccccCceeecccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchh
Q 048083 416 DVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQR 495 (692)
Q Consensus 416 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 495 (692)
||++|.|+.+-.++.-+++++.|++++|.+..+ +++..|..|..++++++...+....-.++-|+++|.+..+...
T Consensus 290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred cccccchhhhhhhhhhccceeEEeccccceeee----hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence 666666666655555666666666666655432 2222233333334444432111111223344444444433222
Q ss_pred hHHHHHHHhhccCCcceEEeeeccCCcc-ccCCCCCCCCccEEEEccc
Q 048083 496 VIDSIAELVSRSTRLQSLKLVYAWRDDY-SDIPFKAQANLQELYLRGA 542 (692)
Q Consensus 496 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~L~~~ 542 (692)
....+.++- +|..|++++|.+... ....++++|.|+.|.|.++
T Consensus 366 ~LSGL~KLY----SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 366 TLSGLRKLY----SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhhhHhhh----hheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 233333333 444455554444332 1223444444444444443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.6e-09 Score=101.95 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=28.1
Q ss_pred CCCcccEEEeccCCCCcEEEe-cCCCccccceeecccccccC--CCcChhhhhccCcEEEEecC
Q 048083 602 GFPQLRVLKLWNLSSLEEWTV-QEAAMPRLRELEIRSCNKLK--PPEGLRNLAATLKDIVLTNM 662 (692)
Q Consensus 602 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~--~p~~~~~l~~sL~~L~i~~c 662 (692)
.+|+|..|+|++|..++.-.+ ....|+.|++|.++.|..+. .--.+.+.|+ |.+|++.||
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ps-l~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPS-LVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcc-eEEEEeccc
Confidence 345555555555544443111 11234555555555555444 2223445555 555555555
No 45
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.54 E-value=8.4e-07 Score=96.12 Aligned_cols=254 Identities=17% Similarity=0.117 Sum_probs=164.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc-chHHHHHHHHHHhhhhhhh-----------ccCCC
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA-KFRDVLIDILQQIDDETLV-----------EASAP 69 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-----------~~~~~ 69 (692)
+.|++.|.-++|.|||||+.+..+. .. .=..+.|.+.+... ++......++..+....+. ....+
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~~--~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~ 112 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWREL--AA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVS 112 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHh--cC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhccccc
Confidence 5789999999999999999999864 22 22458899987764 5556666677766643320 03334
Q ss_pred hhHHHHHHHHHhc--cccEEEEEeCCCCccc------cccc--CCCCc---------------c-cccCCc-----cccC
Q 048083 70 EADLVSSLTTLLK--EISYLIVVEDVETPQV------CNPN--NIPPE---------------A-EAAGPT-----LHLS 118 (692)
Q Consensus 70 ~~~~~~~l~~~L~--~k~~LlVLDdv~~~~~------~~~~--~~~~~---------------~-~~~~~~-----~~l~ 118 (692)
...+.+.+...+. .++..+||||-.-... ++.+ ..|.+ + ...... -+.-
T Consensus 113 l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~L 192 (894)
T COG2909 113 LESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEEL 192 (894)
T ss_pred HHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhh
Confidence 4445555555554 3689999999754321 1111 44544 0 000000 1444
Q ss_pred CCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCC-hHHHHHHHHHh-----
Q 048083 119 RLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKE-AKYWSKVIEHA----- 192 (692)
Q Consensus 119 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~-~~~w~~~l~~l----- 192 (692)
.++.+|+.++|.... +. +-.....+.+.+...|.+-|+..++=.++.+. .+.-...+...
T Consensus 193 rf~~eE~~~fl~~~~------~l--------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~ 258 (894)
T COG2909 193 RFDTEEAAAFLNDRG------SL--------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLS 258 (894)
T ss_pred cCChHHHHHHHHHcC------CC--------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHH
Confidence 688999999998764 11 11133478899999999999999998888433 22222222111
Q ss_pred --cCCCCCCCCCccchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHHHHHhccceeeeeccCCCCceE
Q 048083 193 --DNSRSGSGTGSGLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFEELVIRNLIQVTKWRLDGSPKM 270 (692)
Q Consensus 193 --~~~~s~~~L~~~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~L~~~sLi~~~~~~~~~~~~~ 270 (692)
-....++.+|++++..++-+|+++.- -+.|++.- ..++.+..++++|..++|+-..-++ ...-
T Consensus 259 dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L--------tg~~ng~amLe~L~~~gLFl~~Ldd---~~~W 323 (894)
T COG2909 259 DYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL--------TGEENGQAMLEELERRGLFLQRLDD---EGQW 323 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH--------hcCCcHHHHHHHHHhCCCceeeecC---CCce
Confidence 11445788999999999999998542 23344432 3456788999999999987643322 2346
Q ss_pred EEcChHHHHHHHHhhhc
Q 048083 271 CRMPSAVYRVFSKEAEN 287 (692)
Q Consensus 271 ~~~h~lv~~~~~~~~~~ 287 (692)
|+.|.++.++.+.....
T Consensus 324 fryH~LFaeFL~~r~~~ 340 (894)
T COG2909 324 FRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eehhHHHHHHHHhhhcc
Confidence 99999999999876654
No 46
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.51 E-value=3.9e-06 Score=85.65 Aligned_cols=228 Identities=19% Similarity=0.182 Sum_probs=130.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhh---hc-cCCChhHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETL---VE-ASAPEADLVSSLTT 79 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~-~~~~~~~~~~~l~~ 79 (692)
..+.|+|++|+|||+||++++++ ....+. .+.......... +...+..+..... .+ +... ......+..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~--~~~~~~---~~~~~~~~~~~~-l~~~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~ 103 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANE--MGVNLK---ITSGPALEKPGD-LAAILTNLEEGDVLFIDEIHRLS-PAVEELLYP 103 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--hCCCEE---EeccchhcCchh-HHHHHHhcccCCEEEEehHhhhC-HHHHHHhhH
Confidence 45789999999999999999998 432221 122111111112 2222233322111 00 1111 223455667
Q ss_pred HhccccEEEEEeCCCCcccccccCCCCc----------------ccccCCccccCCCCHHHHHHHHHhhccccccccCcc
Q 048083 80 LLKEISYLIVVEDVETPQVCNPNNIPPE----------------AEAAGPTLHLSRLNKEESWKLLLKKVPVATAAESDD 143 (692)
Q Consensus 80 ~L~~k~~LlVLDdv~~~~~~~~~~~~~~----------------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 143 (692)
.+.+.+..+|+|+..+..++... .|+. ....+..+++++++.++..+++.+.+... +
T Consensus 104 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~---~--- 176 (305)
T TIGR00635 104 AMEDFRLDIVIGKGPSARSVRLD-LPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL---N--- 176 (305)
T ss_pred HHhhhheeeeeccCccccceeec-CCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh---C---
Confidence 77778888999987766544321 1111 01123456899999999999999877322 1
Q ss_pred ccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhh-------cCCC--hHHHHHHHHHhcCCCCCCCCCccchhHHh-hhc
Q 048083 144 DLNNNSESINTFKERILEICGGLPLHISLLGGLL-------STKE--AKYWSKVIEHADNSRSGSGTGSGLKPFFL-YVG 213 (692)
Q Consensus 144 ~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l-------~~~~--~~~w~~~l~~l~~~~s~~~L~~~~k~~fl-~~a 213 (692)
..-.++....|++.|+|.|-.+..++..+ .... .+....+++.+ ...+..+++..+..+. .++
T Consensus 177 -----~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l--~~~~~~l~~~~~~~L~al~~ 249 (305)
T TIGR00635 177 -----VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEML--MIDELGLDEIDRKLLSVLIE 249 (305)
T ss_pred -----CCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHH
Confidence 12224556789999999997655444332 1111 44555555553 4456778877777665 335
Q ss_pred CCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHH-HHHhccceeee
Q 048083 214 MFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFE-ELVIRNLIQVT 260 (692)
Q Consensus 214 ~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~-~L~~~sLi~~~ 260 (692)
.+..+ .+..+.+....- .+...+...++ .|++++||+..
T Consensus 250 ~~~~~-~~~~~~ia~~lg-------~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 250 QFQGG-PVGLKTLAAALG-------EDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HhCCC-cccHHHHHHHhC-------CCcchHHHhhhHHHHHcCCcccC
Confidence 55433 445444443321 34555777788 69999999743
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.51 E-value=8.8e-08 Score=71.10 Aligned_cols=58 Identities=26% Similarity=0.351 Sum_probs=33.4
Q ss_pred eEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCcc
Q 048083 364 LLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTK 421 (692)
Q Consensus 364 ~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~ 421 (692)
+|++|++++|.++.+++.+|..+++|++|++++|.+..+|+ .|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666665555545556666666666666555543 44555555555555554
No 48
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.49 E-value=1.9e-07 Score=90.38 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc--cchHHHHHHHHHHhhhhhhhc---c-CCChhHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD--AKFRDVLIDILQQIDDETLVE---A-SAPEADLVSSL 77 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~---~-~~~~~~~~~~l 77 (692)
+.++|.|.+|+|||||+++++++.... +|+..+|+.+.+. .++.++++.+...+-.....+ . ..-........
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999995443 7899999987666 688888888833332222210 0 00111222222
Q ss_pred HHH-hccccEEEEEeCCCC
Q 048083 78 TTL-LKEISYLIVVEDVET 95 (692)
Q Consensus 78 ~~~-L~~k~~LlVLDdv~~ 95 (692)
... -.++++++++|++..
T Consensus 96 ~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 96 KRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHCCCCEEEEEECHHH
Confidence 222 247899999999976
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.46 E-value=5.6e-06 Score=85.04 Aligned_cols=229 Identities=17% Similarity=0.159 Sum_probs=130.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhh---hc-cCCChhHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETL---VE-ASAPEADLVSSLTT 79 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~-~~~~~~~~~~~l~~ 79 (692)
..+.|+|++|+||||+|+.+++. ....+. ++.... .....-+..++..+..... .+ ... .....+.+..
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~--l~~~~~---~~~~~~-~~~~~~l~~~l~~l~~~~vl~IDEi~~l-~~~~~e~l~~ 124 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE--MGVNIR---ITSGPA-LEKPGDLAAILTNLEEGDVLFIDEIHRL-SPVVEEILYP 124 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH--hCCCeE---EEeccc-ccChHHHHHHHHhcccCCEEEEecHhhc-chHHHHHHHH
Confidence 46789999999999999999998 332221 122111 1111223333333322111 00 111 1123344566
Q ss_pred HhccccEEEEEeCCCCcccccccCCCCc----------------ccccCCccccCCCCHHHHHHHHHhhccccccccCcc
Q 048083 80 LLKEISYLIVVEDVETPQVCNPNNIPPE----------------AEAAGPTLHLSRLNKEESWKLLLKKVPVATAAESDD 143 (692)
Q Consensus 80 ~L~~k~~LlVLDdv~~~~~~~~~~~~~~----------------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 143 (692)
.+.+.+..+|+|+..+..++... +|.. ....+..+++++++.++..+++.+.+... +
T Consensus 125 ~~e~~~~~~~l~~~~~~~~~~~~-l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~---~--- 197 (328)
T PRK00080 125 AMEDFRLDIMIGKGPAARSIRLD-LPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL---G--- 197 (328)
T ss_pred HHHhcceeeeeccCccccceeec-CCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc---C---
Confidence 67777888888887664433210 1110 11134456999999999999999886333 2
Q ss_pred ccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhc------CCC---hHHHHHHHHHhcCCCCCCCCCccchhHHh-hhc
Q 048083 144 DLNNNSESINTFKERILEICGGLPLHISLLGGLLS------TKE---AKYWSKVIEHADNSRSGSGTGSGLKPFFL-YVG 213 (692)
Q Consensus 144 ~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~------~~~---~~~w~~~l~~l~~~~s~~~L~~~~k~~fl-~~a 213 (692)
..--++....|++.|+|.|-.+..+...+. +.. .+.-..+++.+ ...+..+++..+..+. ...
T Consensus 198 -----~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~--~~~~~~l~~~~~~~l~~~~~ 270 (328)
T PRK00080 198 -----VEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML--GVDELGLDEMDRKYLRTIIE 270 (328)
T ss_pred -----CCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh--CCCcCCCCHHHHHHHHHHHH
Confidence 122345688999999999965544443221 111 23333333332 4556778888888775 555
Q ss_pred CCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHH-HHHhccceeeee
Q 048083 214 MFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFE-ELVIRNLIQVTK 261 (692)
Q Consensus 214 ~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~-~L~~~sLi~~~~ 261 (692)
.|..+ .+..+.+....- .+.+.+++.++ .|++.+||+...
T Consensus 271 ~~~~~-~~~~~~~a~~lg-------~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 271 KFGGG-PVGLDTLAAALG-------EERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HcCCC-ceeHHHHHHHHC-------CCcchHHHHhhHHHHHcCCcccCC
Confidence 66554 456666544332 34455677777 899999997533
No 50
>PF05729 NACHT: NACHT domain
Probab=98.44 E-value=5.6e-07 Score=82.76 Aligned_cols=122 Identities=21% Similarity=0.326 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhc----ccccceEEecCccchH---HHHHHHHHHhhhhhhhccCCChhHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRH----FAKRAWIRVRGDAKFR---DVLIDILQQIDDETLVEASAPEADLVSS 76 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 76 (692)
|++.|+|.+|+||||++++++.+..-... +...+|+......... .+...+..+.... ...... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHH---H
Confidence 68999999999999999999988322222 2344555554443322 2222232222211 111111 1
Q ss_pred HHH-HhccccEEEEEeCCCCccc-ccc---------c------CCCCc----------------cc-ccCCccccCCCCH
Q 048083 77 LTT-LLKEISYLIVVEDVETPQV-CNP---------N------NIPPE----------------AE-AAGPTLHLSRLNK 122 (692)
Q Consensus 77 l~~-~L~~k~~LlVLDdv~~~~~-~~~---------~------~~~~~----------------~~-~~~~~~~l~~L~~ 122 (692)
+.. .-+.+++++|+|++|+... ... + ..+.+ .. .....+++.++++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 222 2257899999999998443 111 1 12333 01 1112468999999
Q ss_pred HHHHHHHHhhc
Q 048083 123 EESWKLLLKKV 133 (692)
Q Consensus 123 ~ea~~Lf~~~a 133 (692)
++..+++.++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99988887653
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=2.1e-08 Score=96.98 Aligned_cols=240 Identities=19% Similarity=0.199 Sum_probs=155.1
Q ss_pred ccCCCCCeEEecCCccce-----ecChhhhccccCceeecccccccccccccCCCcccccccccccCCCccccccccccc
Q 048083 406 VGNLRYLETLDVKHTKLR-----YLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTK 480 (692)
Q Consensus 406 ~~~l~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~ 480 (692)
+.....+..+++++|.+. .+.+.+.+.+.|+..+++.-...++...+. ..|..| . ..+..
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~--e~L~~l----------~---~aL~~ 90 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIP--EALKML----------S---KALLG 90 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHH--HHHHHH----------H---HHHhc
Confidence 445677888888888554 234456666677777665432221111110 011111 1 14556
Q ss_pred cccccccccccc--chhhHHHHHHHhhccCCcceEEeeeccCCcc-------------ccCCCCCCCCccEEEEcccc-c
Q 048083 481 LASLRKLGVKCY--SQRVIDSIAELVSRSTRLQSLKLVYAWRDDY-------------SDIPFKAQANLQELYLRGAL-R 544 (692)
Q Consensus 481 l~~L~~L~l~~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-------------~~~~l~~~~~L~~L~L~~~~-~ 544 (692)
.++|++|+++.+ .......+..+...|..|++|.|.+|++... ........+.|+.+....+. .
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 678888888887 4455666666666788999999999965433 22334566789999887765 2
Q ss_pred -----cccccccCccCccceeeeeccCCCCCch----hhhhcCCCCCeeeecCCccCccE---EEEecCCCCcccEEEec
Q 048083 545 -----MFSAKTSSFPRNLKIVTLSMSRLYWDPM----EALEKLCHLNILRIIGEAYEGKK---MTCQAGGFPQLRVLKLW 612 (692)
Q Consensus 545 -----~~p~~~~~l~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~ 612 (692)
.+...+... +.|+.+.++.|.+..... ..+..+++|+.|++.+|.++.+. +......++.|+.|++.
T Consensus 171 n~ga~~~A~~~~~~-~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 171 NGGATALAEAFQSH-PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred cccHHHHHHHHHhc-cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 223344555 899999999998755433 45778999999999999886432 22234567899999999
Q ss_pred cCCCCcEE-E-----ecCCCccccceeecccccccC-----CCcChhhhhccCcEEEEecCc
Q 048083 613 NLSSLEEW-T-----VQEAAMPRLRELEIRSCNKLK-----PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 613 ~~~~l~~l-~-----~~~~~~~~L~~L~l~~c~~l~-----~p~~~~~l~~sL~~L~i~~c~ 663 (692)
+|. ++.= . ......|+|+.|.+.+|..-. +-..+...|. |..|++++|.
T Consensus 250 dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d-L~kLnLngN~ 309 (382)
T KOG1909|consen 250 DCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD-LEKLNLNGNR 309 (382)
T ss_pred ccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh-hHHhcCCccc
Confidence 984 3211 0 011237999999999977433 3334556788 9999999986
No 52
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.39 E-value=4e-07 Score=91.70 Aligned_cols=92 Identities=13% Similarity=0.171 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc--chHHHHHHHHHHhhhhhhhccC----CChhHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA--KFRDVLIDILQQIDDETLVEAS----APEADLVSSL 77 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~----~~~~~~~~~l 77 (692)
+.++|+|++|+||||||+++|++.... +|+.++||.+.+.. .+.++++.+...+-..+..+.. .-........
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 567999999999999999999994333 79999999888776 5666666665322222211100 0011112222
Q ss_pred HHH-hccccEEEEEeCCCCc
Q 048083 78 TTL-LKEISYLIVVEDVETP 96 (692)
Q Consensus 78 ~~~-L~~k~~LlVLDdv~~~ 96 (692)
+.. -.+++++|++|++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHcCCCEEEEEEChHHH
Confidence 222 2579999999999763
No 53
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.37 E-value=7.2e-07 Score=89.21 Aligned_cols=263 Identities=17% Similarity=0.163 Sum_probs=163.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhccc-ccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFA-KRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL 81 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 81 (692)
.|.|.++|.|||||||++-.+.. +...|. ++.++......+...+.-.....+..... +-+.....+..+.
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~~~ 85 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVRRI 85 (414)
T ss_pred hheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHHHH
Confidence 47899999999999999999988 456885 46677777666766777666666665433 2234455778888
Q ss_pred ccccEEEEEeCCCCcc-cccc----c--CCCCc--------cc--ccCCccccCCCCHH-HHHHHHHhhccccccccCcc
Q 048083 82 KEISYLIVVEDVETPQ-VCNP----N--NIPPE--------AE--AAGPTLHLSRLNKE-ESWKLLLKKVPVATAAESDD 143 (692)
Q Consensus 82 ~~k~~LlVLDdv~~~~-~~~~----~--~~~~~--------~~--~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~~~~~~ 143 (692)
.+++.++|+||..+.. +... + +-|.. +. .....+.++.++.. ++.++|...+... ...+
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~---~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLV---ALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHh---ccce
Confidence 8999999999987632 1111 1 11111 11 12233477777765 7889987765332 2211
Q ss_pred ccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHH----HhcC----------------CCCCCCCCc
Q 048083 144 DLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKEAKYWSKVIE----HADN----------------SRSGSGTGS 203 (692)
Q Consensus 144 ~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~~~~w~~~l~----~l~~----------------~~s~~~L~~ 203 (692)
...........+|++..+|.|++|...++..+.....+....++ .+.. ..||.-|..
T Consensus 163 ---~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 163 ---WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ---eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 22344456788999999999999999998887766333222221 1111 345556677
Q ss_pred cchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHHHHHhccceeeeeccCCCCceEEEcChHHHHHHHH
Q 048083 204 GLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFEELVIRNLIQVTKWRLDGSPKMCRMPSAVYRVFSK 283 (692)
Q Consensus 204 ~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~L~~~sLi~~~~~~~~~~~~~~~~h~lv~~~~~~ 283 (692)
-.+..|..++.|...+.-. ...|.+.|-......-.....+..+++++++-.... .....|+.-+-.+.|+..
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~---~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDL---LGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhh---hhHHHHHHHHHHHHHHHH
Confidence 8888888898887765433 233444443211233345555667888888764331 112235555666666665
Q ss_pred hhh
Q 048083 284 EAE 286 (692)
Q Consensus 284 ~~~ 286 (692)
+..
T Consensus 313 eL~ 315 (414)
T COG3903 313 ELH 315 (414)
T ss_pred HHH
Confidence 554
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.34 E-value=7.4e-08 Score=102.45 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=37.0
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLY 439 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 439 (692)
..+++|..|++.+|.+.++... +..+.+|++|++++|.|..+.. +..+..|+.|++++|.|+.+.. +..+.+|+.++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence 4444444444444444444432 3444444444444444444432 3344444444444444443322 22244444444
Q ss_pred ccccccc
Q 048083 440 LNWIHSA 446 (692)
Q Consensus 440 l~~~~~~ 446 (692)
+++|.+.
T Consensus 169 l~~n~i~ 175 (414)
T KOG0531|consen 169 LSYNRIV 175 (414)
T ss_pred CCcchhh
Confidence 4444433
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.33 E-value=2.1e-08 Score=99.13 Aligned_cols=295 Identities=15% Similarity=0.078 Sum_probs=143.3
Q ss_pred cccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCC-CC-CChhhhccccccceeeccCC-CccccC--
Q 048083 329 CHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYK-PK-LSDHVIGKLLHLSYLGLRST-FIDSLP-- 403 (692)
Q Consensus 329 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~-l~~~~~~~l~~L~~L~l~~~-~i~~lp-- 403 (692)
..||.|.+.+....- ...+..+- ..+++++.|.+.+|.. ++ ...+.-..+.+|++|++..| .++...
T Consensus 138 g~lk~LSlrG~r~v~------~sslrt~~--~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG------DSSLRTFA--SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred cccccccccccccCC------cchhhHHh--hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 356677776654111 11344555 8889999999988872 21 11121335788999999874 443321
Q ss_pred ccccCCCCCeEEecCCc-ccee--cChhhhccccCceeeccccccccccccc----CCCcccccccccccCCCcccc---
Q 048083 404 NSVGNLRYLETLDVKHT-KLRY--LPDSIWKAKKLQHLYLNWIHSAISWLNF----SSLNNLQTLWGLSMGDDSLFN--- 473 (692)
Q Consensus 404 ~~~~~l~~L~~L~L~~~-~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~i----~~l~~L~~L~~~~~~~~~~~~--- 473 (692)
.....+++|.+|++++| .++. +-....++.+++.+.+.||...... .+ +....+-++ ++..+..+.
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le-~l~~~~~~~~~i~~l---nl~~c~~lTD~~ 285 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE-ALLKAAAYCLEILKL---NLQHCNQLTDED 285 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH-HHHHHhccChHhhcc---chhhhccccchH
Confidence 22356899999999999 5653 3333455666777766666432110 00 000111111 111111000
Q ss_pred cccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeecc-CCccccCCCC-CCCCccEEEEcccccccccccc
Q 048083 474 QTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAW-RDDYSDIPFK-AQANLQELYLRGALRMFSAKTS 551 (692)
Q Consensus 474 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~L~~~~~~~p~~~~ 551 (692)
.-.--..+..|+.|+.+++.......+..+..++.+|+.|-++.|. ++......++ +++.|+.+++..+...+...+.
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence 0001123445566666665554445555555555666666666653 2222222221 3344555555544322221111
Q ss_pred CccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccE----EEEecCCCCcccEEEeccCCCCcEEEe-cCCC
Q 048083 552 SFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKK----MTCQAGGFPQLRVLKLWNLSSLEEWTV-QEAA 626 (692)
Q Consensus 552 ~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~ 626 (692)
++ -.+++.|+.|.++++....+. +.........|+.+.+.+|+.+++-.. ....
T Consensus 366 sl---------------------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 366 SL---------------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred hh---------------------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 11 123444555555443322211 111223455677777777776554321 2234
Q ss_pred ccccceeecccccccC---CCcChhhhhccCcEE
Q 048083 627 MPRLRELEIRSCNKLK---PPEGLRNLAATLKDI 657 (692)
Q Consensus 627 ~~~L~~L~l~~c~~l~---~p~~~~~l~~sL~~L 657 (692)
+++|+.+++.+|.... +-.-..++|+ ++..
T Consensus 425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~-i~v~ 457 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTKEAISRFATHLPN-IKVH 457 (483)
T ss_pred CcccceeeeechhhhhhhhhHHHHhhCcc-ceeh
Confidence 5677777777777666 2223345555 4443
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=5.7e-07 Score=66.72 Aligned_cols=59 Identities=31% Similarity=0.390 Sum_probs=52.5
Q ss_pred cccceeeccCCCccccCc-cccCCCCCeEEecCCccceecC-hhhhccccCceeecccccc
Q 048083 387 LHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQHLYLNWIHS 445 (692)
Q Consensus 387 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~ 445 (692)
++|++|++++|.+..+|+ .+.++++|++|++++|.++.+| ..+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999999999985 6789999999999999999886 5789999999999999863
No 57
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.24 E-value=3.4e-06 Score=82.40 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=79.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHH---------HHHHhhhhhhhc--------
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLID---------ILQQIDDETLVE-------- 65 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~---------i~~~l~~~~~~~-------- 65 (692)
.+.+.|+|+.|+|||+|++++.+. .+..-..++|+.............. +.+.+.......
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKD 97 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECT
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhc
Confidence 468999999999999999999998 4333334555554333322221111 111121111100
Q ss_pred cCCChhHHHHHHHHHhc--cccEEEEEeCCCCcc-ccc---cc---------CC--CCc-------------cc------
Q 048083 66 ASAPEADLVSSLTTLLK--EISYLIVVEDVETPQ-VCN---PN---------NI--PPE-------------AE------ 109 (692)
Q Consensus 66 ~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~-~~~---~~---------~~--~~~-------------~~------ 109 (692)
...........+.+.++ +++++||+||++... ... .+ .. ..+ ..
T Consensus 98 ~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~ 177 (234)
T PF01637_consen 98 LSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKS 177 (234)
T ss_dssp S-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTS
T ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccC
Confidence 00112233344444443 345999999998755 111 11 10 000 00
Q ss_pred ---ccCCccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHH
Q 048083 110 ---AAGPTLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISL 172 (692)
Q Consensus 110 ---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 172 (692)
.....+.+++++.+++.+++....-.. . .. ..-++..++|++.+||+|..|..
T Consensus 178 ~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~------~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 178 PLFGRFSHIELKPLSKEEAREFLKELFKEL---I------KL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TTTT---EEEE----HHHHHHHHHHHHHCC----------------HHHHHHHHHHHTT-HHHHHH
T ss_pred ccccccceEEEeeCCHHHHHHHHHHHHHHh---h------cc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 011125999999999999998864111 0 11 12345568999999999987754
No 58
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.20 E-value=3.1e-06 Score=85.89 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc--cchHHHHHHHHHHhhhhhhhccCCCh----hHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD--AKFRDVLIDILQQIDDETLVEASAPE----ADLVSSL 77 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~~~l 77 (692)
+.++|+|.+|.|||||++.+++.... ++|+..+||.+.+. ..+.++++.+...+-..+..+..... ..+.+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 56899999999999999999998432 25999999987755 67888888885544433331111110 1111222
Q ss_pred HHH-hccccEEEEEeCCCCc
Q 048083 78 TTL-LKEISYLIVVEDVETP 96 (692)
Q Consensus 78 ~~~-L~~k~~LlVLDdv~~~ 96 (692)
+.. -++++++|++|++...
T Consensus 248 e~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHcCCCeEEEEEChhHH
Confidence 222 3578999999999763
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=4.1e-06 Score=79.48 Aligned_cols=183 Identities=18% Similarity=0.164 Sum_probs=110.2
Q ss_pred CCcceEEEEeecCCCCCCCCh--hhhccccccceeeccCCCc----cccCccccCCCCCeEEecCCccce--ecChhhhc
Q 048083 360 RGLVLLTVLDLEGVYKPKLSD--HVIGKLLHLSYLGLRSTFI----DSLPNSVGNLRYLETLDVKHTKLR--YLPDSIWK 431 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~--~~~~~l~~L~~L~l~~~~i----~~lp~~~~~l~~L~~L~L~~~~l~--~lp~~~~~ 431 (692)
..+..++.|||.+|.+++..+ +.+.+|++|++|+++.|.+ +.+| -.+.+|++|-|.++.+. ..-..+..
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 667778888888888763322 2256788888888887754 3444 23677888888887554 44455677
Q ss_pred cccCceeecccccccccccccCCCcccccccccccCCCcccccccccccc-cccccccccccchhhHHHHHHHhhccCCc
Q 048083 432 AKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKL-ASLRKLGVKCYSQRVIDSIAELVSRSTRL 510 (692)
Q Consensus 432 l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 510 (692)
++.++.|+++.|.+..+ ++..+ ..... +.+++|+...|.......+.++.+.++++
T Consensus 145 lP~vtelHmS~N~~rq~----------------n~Dd~-------c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQL----------------NLDDN-------CIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred chhhhhhhhccchhhhh----------------ccccc-------cccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 88888888877753311 22222 11111 34567777777777777777877778899
Q ss_pred ceEEeeeccCCcc-ccCCCCCCCCccEEEEccccccccccccCccCccceeeeeccCCC-CCchhhhhcCCCCCeeeecC
Q 048083 511 QSLKLVYAWRDDY-SDIPFKAQANLQELYLRGALRMFSAKTSSFPRNLKIVTLSMSRLY-WDPMEALEKLCHLNILRIIG 588 (692)
Q Consensus 511 ~~L~l~~~~~~~~-~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~-~~~~~~l~~l~~L~~L~l~~ 588 (692)
..+-+..|...+. ......++|.+- -|+|+.+++. ....+.+.+++.|..|.+++
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~-----------------------~LnL~~~~idswasvD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLS-----------------------CLNLGANNIDSWASVDALNGFPQLVDLRVSE 258 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcch-----------------------hhhhcccccccHHHHHHHcCCchhheeeccC
Confidence 9888888743322 222333333333 4444444442 23344555666666666655
Q ss_pred Ccc
Q 048083 589 EAY 591 (692)
Q Consensus 589 ~~~ 591 (692)
+.+
T Consensus 259 ~Pl 261 (418)
T KOG2982|consen 259 NPL 261 (418)
T ss_pred Ccc
Confidence 544
No 60
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=3.1e-06 Score=94.32 Aligned_cols=90 Identities=24% Similarity=0.320 Sum_probs=76.8
Q ss_pred eEEEEeecCCCCC-CCChhhhccccccceeeccCCCcc-ccCccccCCCCCeEEecCCccce-ecChhhhccccCceeec
Q 048083 364 LLTVLDLEGVYKP-KLSDHVIGKLLHLSYLGLRSTFID-SLPNSVGNLRYLETLDVKHTKLR-YLPDSIWKAKKLQHLYL 440 (692)
Q Consensus 364 ~L~~L~L~~~~~~-~l~~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l 440 (692)
.++.|+|+++.+. .+|.. ++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|+++ .+|..++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4888999999887 67777 999999999999999885 78888999999999999999888 78888999999999999
Q ss_pred cccccc-ccccccCC
Q 048083 441 NWIHSA-ISWLNFSS 454 (692)
Q Consensus 441 ~~~~~~-~~~~~i~~ 454 (692)
++|.+. .+|..++.
T Consensus 498 s~N~l~g~iP~~l~~ 512 (623)
T PLN03150 498 NGNSLSGRVPAALGG 512 (623)
T ss_pred cCCcccccCChHHhh
Confidence 998876 56666544
No 61
>PLN03150 hypothetical protein; Provisional
Probab=98.06 E-value=5.7e-06 Score=92.28 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=87.3
Q ss_pred ccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCC-CCChhhhccccccceeeccCCCcc-ccCcccc
Q 048083 330 HLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKP-KLSDHVIGKLLHLSYLGLRSTFID-SLPNSVG 407 (692)
Q Consensus 330 ~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~l~~L~~L~l~~~~i~-~lp~~~~ 407 (692)
.++.|.+.++.. ...++..+ ..+++|+.|+|++|.+. .+|.. ++.+++|+.|+|++|.+. .+|..++
T Consensus 419 ~v~~L~L~~n~L--------~g~ip~~i--~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGL--------RGFIPNDI--SKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCCCc--------cccCCHHH--hCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHh
Confidence 466777776652 22456678 89999999999999997 77777 999999999999999885 6888899
Q ss_pred CCCCCeEEecCCccce-ecChhhhcc-ccCceeeccccccc
Q 048083 408 NLRYLETLDVKHTKLR-YLPDSIWKA-KKLQHLYLNWIHSA 446 (692)
Q Consensus 408 ~l~~L~~L~L~~~~l~-~lp~~~~~l-~~L~~L~l~~~~~~ 446 (692)
++++|++|+|++|+++ .+|..+..+ .++..+++.+|...
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 9999999999999988 889888763 56778888877644
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=1e-06 Score=93.68 Aligned_cols=192 Identities=26% Similarity=0.309 Sum_probs=86.6
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeeccc
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNW 442 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 442 (692)
..++.+.+..+.+.++... +..+++|..|++.+|.|..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+
T Consensus 72 ~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred HhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheecc
Confidence 3334444555555443333 45556666666666655555544555666666666666555553 244455566666666
Q ss_pred ccccccccccCCCcccccccccccCCCcccccccc-cccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCC
Q 048083 443 IHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFD-FTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRD 521 (692)
Q Consensus 443 ~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 521 (692)
|.+..+ ..+..+..|+.++++++....+... +..+.+++.+.+..+.......+.... .+..+++..|.+.
T Consensus 150 N~i~~~----~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~----~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 150 NLISDI----SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLK----KLVLLSLLDNKIS 221 (414)
T ss_pred Ccchhc----cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHH----HHHHhhcccccce
Confidence 555432 1222233333335555542222111 345555555555554322222232222 3333344444332
Q ss_pred ccccCCCCCCC--CccEEEEcccc-ccccccccCccCccceeeeeccCC
Q 048083 522 DYSDIPFKAQA--NLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRL 567 (692)
Q Consensus 522 ~~~~~~l~~~~--~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l 567 (692)
... .+.... +|+.+++.++. ...+..+..+ .++..|++..+++
T Consensus 222 ~~~--~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~-~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 222 KLE--GLNELVMLHLRELYLSGNRISRSPEGLENL-KNLPVLDLSSNRI 267 (414)
T ss_pred ecc--CcccchhHHHHHHhcccCcccccccccccc-ccccccchhhccc
Confidence 221 111111 25555555544 2222333344 5555555555544
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=7.3e-06 Score=55.53 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=17.0
Q ss_pred ccceeeccCCCccccCccccCCCCCeEEecCCcccee
Q 048083 388 HLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRY 424 (692)
Q Consensus 388 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~ 424 (692)
+|++|++++|.+..+|+.+++|++|++|++++|.++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 3444555555444444444445555555555554443
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.92 E-value=6.4e-05 Score=75.07 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=61.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccc-hHHHHHHHHHHhhhhhhhccCCChhHHHHHH-HHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAK-FRDVLIDILQQIDDETLVEASAPEADLVSSL-TTL 80 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~ 80 (692)
+.-.-+||++|+||||||+.+... ....| ..++...+ ++++. ++.+.- +..
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr--------------------~i~e~a~~~~ 100 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLR--------------------EIIEEARKNR 100 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHH--------------------HHHHHHHHHH
Confidence 334568999999999999999997 44444 33333222 11211 112222 223
Q ss_pred hccccEEEEEeCCCCcc--ccccc-CCCCc-------cc-------------ccCCccccCCCCHHHHHHHHHhh
Q 048083 81 LKEISYLIVVEDVETPQ--VCNPN-NIPPE-------AE-------------AAGPTLHLSRLNKEESWKLLLKK 132 (692)
Q Consensus 81 L~~k~~LlVLDdv~~~~--~~~~~-~~~~~-------~~-------------~~~~~~~l~~L~~~ea~~Lf~~~ 132 (692)
..+++.+|.+|.|..-. |-+.+ +.-.+ +. .-...+++.+|+.+|-.+++.+.
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 34889999999997632 21222 11111 11 11234599999999999999884
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=4.1e-05 Score=78.31 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=27.9
Q ss_pred CcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeecc
Q 048083 509 RLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMS 565 (692)
Q Consensus 509 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~ 565 (692)
+|+.|++++|..... +.. -+.+|+.|.++.+. ..+......+|+++ .|.+.+|
T Consensus 157 SLk~L~Is~c~~i~L-P~~--LP~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 157 SLKTLSLTGCSNIIL-PEK--LPESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred cccEEEecCCCcccC-ccc--ccccCcEEEecccccccccCccccccccc-Eechhhh
Confidence 677777777653321 111 12477777776542 22222234555666 6666665
No 66
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.88 E-value=0.00032 Score=77.43 Aligned_cols=249 Identities=14% Similarity=0.183 Sum_probs=132.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchh---hcccc--cceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVK---RHFAK--RAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLT 78 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~F~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 78 (692)
.++-|+|++|.|||+.++.+.++..-. ..... +++|++....+...++..|++++...... ...........+.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~-~GlsS~evLerLF 860 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPP-NALNSFKILDRLF 860 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCC-ccccHHHHHHHHH
Confidence 356799999999999999998873111 12222 34566665567788888999888654332 2233344555555
Q ss_pred HHhc---cccEEEEEeCCCCccc-----cccc--------------------CCCCc------ccccCCccccCCCCHHH
Q 048083 79 TLLK---EISYLIVVEDVETPQV-----CNPN--------------------NIPPE------AEAAGPTLHLSRLNKEE 124 (692)
Q Consensus 79 ~~L~---~k~~LlVLDdv~~~~~-----~~~~--------------------~~~~~------~~~~~~~~~l~~L~~~e 124 (692)
..+. ....+||||+|+.... +-.+ .+|.. .......+..++.+.++
T Consensus 861 ~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQ 940 (1164)
T PTZ00112 861 NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDE 940 (1164)
T ss_pred hhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHH
Confidence 5542 2246899999986321 1000 01110 00111224668888999
Q ss_pred HHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCC-----hHHHHHHHHHhcC---CC
Q 048083 125 SWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKE-----AKYWSKVIEHADN---SR 196 (692)
Q Consensus 125 a~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~-----~~~w~~~l~~l~~---~~ 196 (692)
-.+++..++-.. ... .....++-+|+.+++..|-.-.||.++-.+..... .+....+..++.. ..
T Consensus 941 L~dILk~RAe~A---~gV----LdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleeiE~srI~e 1013 (1164)
T PTZ00112 941 IEKIIKERLENC---KEI----IDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTN 1013 (1164)
T ss_pred HHHHHHHHHHhC---CCC----CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHhhhHHH
Confidence 999998876321 110 22333444444444444446667666654443211 4445555544433 22
Q ss_pred CCCCCCccchhHHhhhcCCCC---CCccchhhHHHHH--Hhc--C-CC--CCchHHHHHHHHHHHHhccceeeee
Q 048083 197 SGSGTGSGLKPFFLYVGMFPR---GFEIPVRRLIHLW--CAE--G-FA--APIDTDLAEMYFEELVIRNLIQVTK 261 (692)
Q Consensus 197 s~~~L~~~~k~~fl~~a~f~~---~~~i~~~~l~~~w--~~~--g-~~--~~~~~~~~~~~~~~L~~~sLi~~~~ 261 (692)
.+..||.+.|-.+.-+...-+ ...++...+.... +++ | .+ ....+ ...+++.+|...|+|....
T Consensus 1014 ~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1014 AINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred HHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCCCcHH-HHHHHHHHHHhcCeEEecC
Confidence 344567666554443332111 1134444443322 222 1 11 11233 6777888888888887543
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=2.6e-06 Score=80.84 Aligned_cols=222 Identities=19% Similarity=0.170 Sum_probs=118.7
Q ss_pred eEEEEeecCCCCCCCC--hhhhc-cccccceeeccCCCccccC---ccccCCCCCeEEecCCccceecChhh-hccccCc
Q 048083 364 LLTVLDLEGVYKPKLS--DHVIG-KLLHLSYLGLRSTFIDSLP---NSVGNLRYLETLDVKHTKLRYLPDSI-WKAKKLQ 436 (692)
Q Consensus 364 ~L~~L~L~~~~~~~l~--~~~~~-~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~ 436 (692)
-+..|-+.++.+.... .. |+ ..++++.|||.+|.|.... ..+.+++.|++|+|++|.+....+++ ..+.+|+
T Consensus 46 a~ellvln~~~id~~gd~~~-~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVML-FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHH-HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3445666666655322 22 33 3567778888777665433 23456777777777777555322222 2345566
Q ss_pred eeecccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEee
Q 048083 437 HLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLV 516 (692)
Q Consensus 437 ~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 516 (692)
.|-+.++.+.- +. ... .+..++.++.|+++.+ +++.+.+.
T Consensus 125 ~lVLNgT~L~w--------~~-------------~~s---~l~~lP~vtelHmS~N----------------~~rq~n~D 164 (418)
T KOG2982|consen 125 VLVLNGTGLSW--------TQ-------------STS---SLDDLPKVTELHMSDN----------------SLRQLNLD 164 (418)
T ss_pred EEEEcCCCCCh--------hh-------------hhh---hhhcchhhhhhhhccc----------------hhhhhccc
Confidence 66555543210 00 001 2334444444444432 34444444
Q ss_pred eccCCccccCCCCCCCCccEEEEcccccc----ccccccCccCccceeeeeccCCCCC-chhhhhcCCCCCeeeecCCcc
Q 048083 517 YAWRDDYSDIPFKAQANLQELYLRGALRM----FSAKTSSFPRNLKIVTLSMSRLYWD-PMEALEKLCHLNILRIIGEAY 591 (692)
Q Consensus 517 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~----~p~~~~~l~~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~ 591 (692)
.+..+.. .+.+++|+.-+|... .- ...+..+|+..+.+..|.+... .-.....+|.+..|+++.+++
T Consensus 165 d~c~e~~-------s~~v~tlh~~~c~~~~w~~~~-~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i 236 (418)
T KOG2982|consen 165 DNCIEDW-------STEVLTLHQLPCLEQLWLNKN-KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI 236 (418)
T ss_pred ccccccc-------chhhhhhhcCCcHHHHHHHHH-hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccc
Confidence 3322221 124555555554411 11 1122228889999999976432 233456678888889988877
Q ss_pred CccEEEEecCCCCcccEEEeccCCCCcEEEec------CCCccccceee
Q 048083 592 EGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQ------EAAMPRLRELE 634 (692)
Q Consensus 592 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~------~~~~~~L~~L~ 634 (692)
..-.......+||.|..|.+.+.|-+..+.-. .+.+++++.|+
T Consensus 237 dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 237 DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 65433345668999999998887755544322 23455555554
No 68
>PF13173 AAA_14: AAA domain
Probab=97.87 E-value=1.9e-05 Score=68.81 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL 81 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 81 (692)
+-+++.|.|+-|+||||++++++.+ .. ....++++++.......... .+ ..+.+.+..
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKD--LL-PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--hc-ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 3478999999999999999999988 32 33556777766443211000 00 223333333
Q ss_pred ccccEEEEEeCCCCcccccc
Q 048083 82 KEISYLIVVEDVETPQVCNP 101 (692)
Q Consensus 82 ~~k~~LlVLDdv~~~~~~~~ 101 (692)
..++.+|+||+|.....|..
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~ 78 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWED 78 (128)
T ss_pred ccCCcEEEEehhhhhccHHH
Confidence 34788999999988766544
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.82 E-value=5.3e-05 Score=67.81 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLK 82 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 82 (692)
-+.|.|+|.+|+||||+|+++++. ....-..++++..............+... ...........
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 82 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF--------------LVRLLFELAEK 82 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh--------------hHhHHHHhhcc
Confidence 357899999999999999999998 43222335566654433221111110000 00111222234
Q ss_pred cccEEEEEeCCCCc
Q 048083 83 EISYLIVVEDVETP 96 (692)
Q Consensus 83 ~k~~LlVLDdv~~~ 96 (692)
.++.++|+||++..
T Consensus 83 ~~~~~lilDe~~~~ 96 (151)
T cd00009 83 AKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEEeChhhh
Confidence 56789999999853
No 70
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=1e-06 Score=93.09 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=66.4
Q ss_pred ccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-
Q 048083 465 SMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL- 543 (692)
Q Consensus 465 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~- 543 (692)
+++.|....+-.++.-++.|+.|+++.+.......+..++ .|.+|||++|.......-....+. |+.|+++++.
T Consensus 170 ~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~----~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 170 SFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLP----KLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred hcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcc----cccccccccchhccccccchhhhh-heeeeecccHH
Confidence 4444432222224556677777777765444444454444 777777777755544333333333 7777777665
Q ss_pred ccccccccCccCccceeeeeccCCCC-CchhhhhcCCCCCeeeecCCcc
Q 048083 544 RMFSAKTSSFPRNLKIVTLSMSRLYW-DPMEALEKLCHLNILRIIGEAY 591 (692)
Q Consensus 544 ~~~p~~~~~l~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~ 591 (692)
..+- .+..+ ++|+.||+++|-+.+ ..+..+..|..|+.|.|.+|.+
T Consensus 245 ~tL~-gie~L-ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 245 TTLR-GIENL-KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred Hhhh-hHHhh-hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 3322 45566 677777777665432 2233455566667777766654
No 71
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=1.8e-05 Score=53.64 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=35.5
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN 404 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~ 404 (692)
++|++|++++|.++++|+. +++|++|++|++++|.+..++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence 4789999999999999998 9999999999999999887764
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=9.5e-05 Score=75.70 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=28.2
Q ss_pred CCcceEEeeeccCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceeeeecc
Q 048083 508 TRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMS 565 (692)
Q Consensus 508 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~ 565 (692)
.++..|++++|.+.... .-+++|++|.+++|. ..+|. .+|++|++|++++|
T Consensus 52 ~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~---~LP~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPG---SIPEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCc---hhhhhhhheEccCc
Confidence 36667777766433332 112357777776654 34442 23466777777666
No 73
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.71 E-value=0.00015 Score=76.95 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHH-Hhc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTT-LLK 82 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~ 82 (692)
..+.|+|++|+||||+|+.+++. .... |+.++......+-++.+... ... ...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii~~-------------------~~~~~~~ 90 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVIEE-------------------ARQRRSA 90 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHHHH-------------------HHHhhhc
Confidence 46788999999999999999987 4333 33332221111111111111 111 113
Q ss_pred cccEEEEEeCCCCcc--ccccc--CCCCc-------------------ccccCCccccCCCCHHHHHHHHHhhccccccc
Q 048083 83 EISYLIVVEDVETPQ--VCNPN--NIPPE-------------------AEAAGPTLHLSRLNKEESWKLLLKKVPVATAA 139 (692)
Q Consensus 83 ~k~~LlVLDdv~~~~--~~~~~--~~~~~-------------------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 139 (692)
+++.+|++|+++... +.+.+ .+..+ -......+++.+++.++..+++.+.....
T Consensus 91 g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~--- 167 (413)
T PRK13342 91 GRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDK--- 167 (413)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHh---
Confidence 567788899988632 11111 00000 00011345889999999999998865321
Q ss_pred cCccccCCCchhHHHHHHHHHHHhCCCchHHHH
Q 048083 140 ESDDDLNNNSESINTFKERILEICGGLPLHISL 172 (692)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 172 (692)
+.. . ..-.++....+++.++|.+..+.-
T Consensus 168 ~~~----~-i~i~~~al~~l~~~s~Gd~R~aln 195 (413)
T PRK13342 168 ERG----L-VELDDEALDALARLANGDARRALN 195 (413)
T ss_pred hcC----C-CCCCHHHHHHHHHhCCCCHHHHHH
Confidence 100 1 012245567888999998865543
No 74
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.66 E-value=0.00012 Score=64.90 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
+.+.|+|.+|+||||+|++++.. .......++++..+........... ........ ...........+....+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK--ASGSGELRLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccC--CCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999998 4333323455544333221111111 01111111 122222333344444444
Q ss_pred cc-EEEEEeCCCCcc
Q 048083 84 IS-YLIVVEDVETPQ 97 (692)
Q Consensus 84 k~-~LlVLDdv~~~~ 97 (692)
.+ .+|++|+++...
T Consensus 77 ~~~~viiiDei~~~~ 91 (148)
T smart00382 77 LKPDVLILDEITSLL 91 (148)
T ss_pred cCCCEEEEECCcccC
Confidence 33 899999998754
No 75
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=2.1e-05 Score=87.49 Aligned_cols=90 Identities=23% Similarity=0.315 Sum_probs=52.6
Q ss_pred hHHHhhhccCCcceEEEEeecCCCC-C-CCChhhhc-cccccceeeccCCCc--cccCccccCCCCCeEEecCCccceec
Q 048083 351 TFLDKIISNRGLVLLTVLDLEGVYK-P-KLSDHVIG-KLLHLSYLGLRSTFI--DSLPNSVGNLRYLETLDVKHTKLRYL 425 (692)
Q Consensus 351 ~~~~~~~~~~~~~~L~~L~L~~~~~-~-~l~~~~~~-~l~~L~~L~l~~~~i--~~lp~~~~~l~~L~~L~L~~~~l~~l 425 (692)
.++...+....-.+|+.|+++|... . ..|.. ++ .++.|+.|.+++-.+ ..+.....++++|..||+++++++.+
T Consensus 110 ~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~k-ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 110 SLLKDLLNEESRQNLQHLDISGSELFSNGWPKK-IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL 188 (699)
T ss_pred HHHHHHHhHHHHHhhhhcCccccchhhccHHHH-HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc
Confidence 3444444223445677777777542 1 33333 44 357777777776433 22223345677777777777777766
Q ss_pred ChhhhccccCceeeccc
Q 048083 426 PDSIWKAKKLQHLYLNW 442 (692)
Q Consensus 426 p~~~~~l~~L~~L~l~~ 442 (692)
.+++.+++|+.|.+.+
T Consensus 189 -~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRN 204 (699)
T ss_pred -HHHhccccHHHHhccC
Confidence 5667777777776654
No 76
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.63 E-value=0.00015 Score=67.89 Aligned_cols=28 Identities=39% Similarity=0.655 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRH 32 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~ 32 (692)
-+.+.|+|.+|+|||+|+++++.+ +...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~--~~~~ 51 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDR--LAER 51 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHH--HHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhc
Confidence 367999999999999999999999 5555
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.63 E-value=6.9e-06 Score=68.91 Aligned_cols=90 Identities=20% Similarity=0.098 Sum_probs=53.1
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLY 439 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 439 (692)
.+...|...+|++|.+.++|+....+.+.++.|++++|.+..+|..+..++.|+.|+++.|.+...|..+..+.+|-+|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 45555666666666666666662223345666666666666666556666666666666666666666555566666666
Q ss_pred cccccccccc
Q 048083 440 LNWIHSAISW 449 (692)
Q Consensus 440 l~~~~~~~~~ 449 (692)
..++....+|
T Consensus 130 s~~na~~eid 139 (177)
T KOG4579|consen 130 SPENARAEID 139 (177)
T ss_pred CCCCccccCc
Confidence 6555554444
No 78
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.62 E-value=9.7e-05 Score=70.39 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
.++|+|..|.||||+++.+... ....|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 5789999999999999999998 7789976666643
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.62 E-value=1.4e-05 Score=74.97 Aligned_cols=218 Identities=16% Similarity=0.085 Sum_probs=124.2
Q ss_pred CCcceEEEEeecCCCCC-----CCChhhhccccccceeeccCCCcc----cc-------CccccCCCCCeEEecCCccce
Q 048083 360 RGLVLLTVLDLEGVYKP-----KLSDHVIGKLLHLSYLGLRSTFID----SL-------PNSVGNLRYLETLDVKHTKLR 423 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~-----~l~~~~~~~l~~L~~L~l~~~~i~----~l-------p~~~~~l~~L~~L~L~~~~l~ 423 (692)
.-+..+..++|+||.+. .+... +.+-.+|+..+++.-..+ .+ .+.+-+|++|+..+|++|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~-ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNV-IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHH-HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34778888899998875 22333 566678888887763221 22 233568999999999999555
Q ss_pred -ecC----hhhhccccCceeeccccccccccc-ccCCCcccccccccccCCCccccccccccccccccccccccc-----
Q 048083 424 -YLP----DSIWKAKKLQHLYLNWIHSAISWL-NFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCY----- 492 (692)
Q Consensus 424 -~lp----~~~~~l~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~----- 492 (692)
..| +.+.+-..|.||.+++|.+-.... .|+ +.|++|... . ....-+.|+...+..+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la~n---K--------Kaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLAYN---K--------KAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHHHH---h--------hhccCCCceEEEeccchhccC
Confidence 333 346778889999999887642211 111 112222100 0 1222233333333322
Q ss_pred -chhhHHHHHHHhhccCCcceEEeeeccCCcc-----ccCCCCCCCCccEEEEcccc------ccccccccCccCcccee
Q 048083 493 -SQRVIDSIAELVSRSTRLQSLKLVYAWRDDY-----SDIPFKAQANLQELYLRGAL------RMFSAKTSSFPRNLKIV 560 (692)
Q Consensus 493 -~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~L~~~~------~~~p~~~~~l~~~L~~L 560 (692)
.......+... .+|..+.+..|++... ..-.+.-+.+|+.|+|..+. ..+....+.. +.|++|
T Consensus 173 s~~~~a~~l~sh----~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W-~~lrEL 247 (388)
T COG5238 173 SKELSAALLESH----ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW-NLLREL 247 (388)
T ss_pred cHHHHHHHHHhh----cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc-chhhhc
Confidence 00111112222 3778888888765443 22334456678888887754 1122233444 678999
Q ss_pred eeeccCCCCCchhh----hh--cCCCCCeeeecCCccCccEE
Q 048083 561 TLSMSRLYWDPMEA----LE--KLCHLNILRIIGEAYEGKKM 596 (692)
Q Consensus 561 ~L~~~~l~~~~~~~----l~--~l~~L~~L~l~~~~~~~~~~ 596 (692)
.+..|-++...... +. ..|+|..|...+|...+..+
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence 99999776544333 22 35788888888776655443
No 80
>PRK08118 topology modulation protein; Reviewed
Probab=97.61 E-value=3.8e-05 Score=70.08 Aligned_cols=35 Identities=34% Similarity=0.714 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchh-hcccccce
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVK-RHFAKRAW 38 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~F~~~~w 38 (692)
+.|.|+|++|+||||||+++++...+. -.||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 568999999999999999999985443 45677775
No 81
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0002 Score=73.65 Aligned_cols=87 Identities=21% Similarity=0.339 Sum_probs=70.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcccchhhcccc--cceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhc-
Q 048083 6 IAILGERGSGKTTLARTVYDRVDVKRHFAK--RAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLK- 82 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~- 82 (692)
+.|+|.+|.|||+.++.++++ +++.... ++.|++-...+..+++..|++++..... ......+..+.+.+.+.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~--~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPL--TGDSSLEILKRLYDNLSK 120 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCC--CCCchHHHHHHHHHHHHh
Confidence 789999999999999999999 6555433 5788888888999999999999973222 45667778888888885
Q ss_pred -cccEEEEEeCCCCc
Q 048083 83 -EISYLIVVEDVETP 96 (692)
Q Consensus 83 -~k~~LlVLDdv~~~ 96 (692)
++.+.||||+++..
T Consensus 121 ~~~~~IvvLDEid~L 135 (366)
T COG1474 121 KGKTVIVILDEVDAL 135 (366)
T ss_pred cCCeEEEEEcchhhh
Confidence 47899999999873
No 82
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=2.8e-05 Score=65.31 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=80.1
Q ss_pred ceEEEEeecCCCCCCCChh--hhccccccceeeccCCCccccCcccc-CCCCCeEEecCCccceecChhhhccccCceee
Q 048083 363 VLLTVLDLEGVYKPKLSDH--VIGKLLHLSYLGLRSTFIDSLPNSVG-NLRYLETLDVKHTKLRYLPDSIWKAKKLQHLY 439 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~--~~~~l~~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 439 (692)
..+..++|+.|.+-.+++. .+.+..+|...+|++|.+..+|+.+. +.+.+++|++.+|.|+.+|..+..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3445577788876544332 15566778888899998888887664 55688999999999999998888899999999
Q ss_pred cccccccccccccCCCcccccccccccCCCcccccc
Q 048083 440 LNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQT 475 (692)
Q Consensus 440 l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~ 475 (692)
++.|.+...|.-|.. |++|.+++...+...++|
T Consensus 107 l~~N~l~~~p~vi~~---L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAP---LIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCccccchHHHHH---HHhHHHhcCCCCccccCc
Confidence 999988877776655 444555577666544443
No 83
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.52 E-value=0.0016 Score=74.98 Aligned_cols=151 Identities=13% Similarity=0.056 Sum_probs=94.8
Q ss_pred CccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCC-------hHHH
Q 048083 113 PTLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKE-------AKYW 185 (692)
Q Consensus 113 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~-------~~~w 185 (692)
..+.|.||+..+...+........ .....+..+.|+++.+|+|+=+.-+-..+..+. ...|
T Consensus 212 ~~I~L~PL~~~d~~~lV~~~l~~~------------~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w 279 (849)
T COG3899 212 TTITLAPLSRADTNQLVAATLGCT------------KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAW 279 (849)
T ss_pred eEEecCcCchhhHHHHHHHHhCCc------------ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcce
Confidence 456999999999999998776221 233456789999999999999888877777652 4444
Q ss_pred HHHHHHhcC-----------CCCCCCCCccchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHHHHHhc
Q 048083 186 SKVIEHADN-----------SRSGSGTGSGLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFEELVIR 254 (692)
Q Consensus 186 ~~~l~~l~~-----------~~s~~~L~~~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~L~~~ 254 (692)
..-..++.. ..-.+.||...++.....||+-.. ++.+.+...+.. .....+....+.|...
T Consensus 280 ~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~--F~l~~La~l~~~------~~~~~a~~l~~al~e~ 351 (849)
T COG3899 280 QCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAACIGNR--FDLDTLAALAED------SPALEAAALLDALQEG 351 (849)
T ss_pred eccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcc--CCHHHHHHHHhh------chHHHHHHHHHHhHhh
Confidence 443333333 123457799999999999998654 456665555432 2345566666666665
Q ss_pred cceeeeeccCCC---Cce-EEEcChHHHHHHHH
Q 048083 255 NLIQVTKWRLDG---SPK-MCRMPSAVYRVFSK 283 (692)
Q Consensus 255 sLi~~~~~~~~~---~~~-~~~~h~lv~~~~~~ 283 (692)
.++...+....+ ... .--.|+.+++.+-.
T Consensus 352 lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~ 384 (849)
T COG3899 352 LILPLSETYRFGSNVDIATYKFLHDRVQQAAYN 384 (849)
T ss_pred ceeccccccccccccchhhHHhhHHHHHHHHhc
Confidence 555432111111 111 11357777776643
No 84
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.51 E-value=0.00012 Score=64.19 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|+|.+|+||||+|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999999
No 85
>PRK06893 DNA replication initiation factor; Validated
Probab=97.51 E-value=0.00041 Score=67.13 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEec
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVR 42 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 42 (692)
..+.|+|.+|+|||+||+++++. ...+...+.|++..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH
Confidence 35789999999999999999998 54444456677654
No 86
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=0.00011 Score=82.00 Aligned_cols=110 Identities=20% Similarity=0.161 Sum_probs=83.4
Q ss_pred cCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccC--
Q 048083 326 DRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLP-- 403 (692)
Q Consensus 326 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp-- 403 (692)
.-+|.||+|.+.+-..... .....+ .++|+|+.||+++++++.+ .. ++++++|+.|.+++-.+..-.
T Consensus 145 ~~LPsL~sL~i~~~~~~~~-------dF~~lc--~sFpNL~sLDIS~TnI~nl-~G-IS~LknLq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDND-------DFSQLC--ASFPNLRSLDISGTNISNL-SG-ISRLKNLQVLSMRNLEFESYQDL 213 (699)
T ss_pred hhCcccceEEecCceecch-------hHHHHh--hccCccceeecCCCCccCc-HH-HhccccHHHHhccCCCCCchhhH
Confidence 3689999999998763222 245566 8999999999999999988 45 899999999999886654432
Q ss_pred ccccCCCCCeEEecCCccceecChh-------hhccccCceeeccccccc
Q 048083 404 NSVGNLRYLETLDVKHTKLRYLPDS-------IWKAKKLQHLYLNWIHSA 446 (692)
Q Consensus 404 ~~~~~l~~L~~L~L~~~~l~~lp~~-------~~~l~~L~~L~l~~~~~~ 446 (692)
..+.+|++|++||+|......-+.. -..||+||.||.+++...
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 2467899999999998843322221 234899999999988765
No 87
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=2e-05 Score=83.74 Aligned_cols=125 Identities=17% Similarity=0.128 Sum_probs=67.8
Q ss_pred CceeecccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEE
Q 048083 435 LQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLK 514 (692)
Q Consensus 435 L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 514 (692)
|...+.++|.+..+..++. -|+.|+.+++++|..... ..+..++.|++|+|+++.-.....+... .| .|+.|.
T Consensus 166 L~~a~fsyN~L~~mD~SLq---ll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~--gc-~L~~L~ 238 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQ---LLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMV--GC-KLQLLN 238 (1096)
T ss_pred HhhhhcchhhHHhHHHHHH---HHHHhhhhccchhhhhhh-HHHHhcccccccccccchhccccccchh--hh-hheeee
Confidence 4455555555544443332 333344447777752221 1566777788888876632222222211 11 477777
Q ss_pred eeeccCCccccCCCCCCCCccEEEEcccc-cccc--ccccCccCccceeeeeccCCCC
Q 048083 515 LVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFS--AKTSSFPRNLKIVTLSMSRLYW 569 (692)
Q Consensus 515 l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p--~~~~~l~~~L~~L~L~~~~l~~ 569 (692)
+++|..+. +..+.++.+|+.|+++.+. .... ..+..+ ..|+.|.|.||.+..
T Consensus 239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCcccc
Confidence 77775443 3456667777778877654 1111 012234 677888888877654
No 88
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.41 E-value=0.00095 Score=62.29 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=67.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhh---hccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETL---VEASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~l~~~ 80 (692)
.-+.+||++|.||||||.-++++ ....|. +.+........++ ..++..+...+. .|.-.-.....+.+-..
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k~~dl-~~il~~l~~~~ILFIDEIHRlnk~~qe~Llpa 124 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEKAGDL-AAILTNLKEGDILFIDEIHRLNKAQQEILLPA 124 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--SCHHH-HHHHHT--TT-EEEECTCCC--HHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhhHHHH-HHHHHhcCCCcEEEEechhhccHHHHHHHHHH
Confidence 45788999999999999999999 555553 2222111111122 222233222111 00001111223333344
Q ss_pred hccccEEEEEeCCCCcc----cccccC---------CCCc--ccccCCccccCCCCHHHHHHHHHhhccccccccCcccc
Q 048083 81 LKEISYLIVVEDVETPQ----VCNPNN---------IPPE--AEAAGPTLHLSRLNKEESWKLLLKKVPVATAAESDDDL 145 (692)
Q Consensus 81 L~~k~~LlVLDdv~~~~----~~~~~~---------~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 145 (692)
+.+.++-||+.--.+.. .+..+. +... ....+...+++..+.+|-.+...+.+..-
T Consensus 125 mEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l--------- 195 (233)
T PF05496_consen 125 MEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL--------- 195 (233)
T ss_dssp HHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT---------
T ss_pred hccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh---------
Confidence 44444444443221110 011110 0000 11223334889999999999998776332
Q ss_pred CCCchhHHHHHHHHHHHhCCCch
Q 048083 146 NNNSESINTFKERILEICGGLPL 168 (692)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~glPL 168 (692)
...-.++.+.+|++.+.|-|-
T Consensus 196 --~i~i~~~~~~~Ia~rsrGtPR 216 (233)
T PF05496_consen 196 --NIEIDEDAAEEIARRSRGTPR 216 (233)
T ss_dssp --T-EE-HHHHHHHHHCTTTSHH
T ss_pred --CCCcCHHHHHHHHHhcCCChH
Confidence 123345678999999999994
No 89
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.40 E-value=0.0015 Score=64.95 Aligned_cols=123 Identities=15% Similarity=0.280 Sum_probs=80.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhc--cCCChhHHHHHHHHHhc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVE--ASAPEADLVSSLTTLLK 82 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~l~~~L~ 82 (692)
.|-|+|-.|.|||.+.+++++... ...+|+++...++.+.++..|+.++...+... ...+.+.....+....+
T Consensus 32 ~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q 106 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQ 106 (438)
T ss_pred eEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHh
Confidence 468999999999999999999842 23689999999999999999999995322210 11111222222222222
Q ss_pred -------cccEEEEEeCCCCcccccccCC----------CCc-------------------ccccCCccccCCCCHHHHH
Q 048083 83 -------EISYLIVVEDVETPQVCNPNNI----------PPE-------------------AEAAGPTLHLSRLNKEESW 126 (692)
Q Consensus 83 -------~k~~LlVLDdv~~~~~~~~~~~----------~~~-------------------~~~~~~~~~l~~L~~~ea~ 126 (692)
++.++||||+++...+.+...+ +.. ......+.+.+.-+.+|..
T Consensus 107 ~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~ 186 (438)
T KOG2543|consen 107 WPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQ 186 (438)
T ss_pred hHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHH
Confidence 4589999999998655443311 111 1111223478888999999
Q ss_pred HHHHhh
Q 048083 127 KLLLKK 132 (692)
Q Consensus 127 ~Lf~~~ 132 (692)
+++.+.
T Consensus 187 ~Il~~~ 192 (438)
T KOG2543|consen 187 VILSRD 192 (438)
T ss_pred HHHhcC
Confidence 988764
No 90
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.35 E-value=0.00024 Score=73.74 Aligned_cols=89 Identities=12% Similarity=0.209 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhc-
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLK- 82 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~- 82 (692)
+.|.++|++|+|||++|+++++.......|+.+-||.+.+..+..+.+.... .... .-.....-..+.++..-+
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r----P~~v-gy~~~~G~f~~~~~~A~~~ 269 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR----PNGV-GFRRKDGIFYNFCQQAKEQ 269 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC----CCCC-CeEecCchHHHHHHHHHhc
Confidence 4678899999999999999998844344667788999988877655543221 1000 000001111222333222
Q ss_pred -cccEEEEEeCCCCcc
Q 048083 83 -EISYLIVVEDVETPQ 97 (692)
Q Consensus 83 -~k~~LlVLDdv~~~~ 97 (692)
.+++.+|+|+++...
T Consensus 270 p~~~~vliIDEINRan 285 (459)
T PRK11331 270 PEKKYVFIIDEINRAN 285 (459)
T ss_pred ccCCcEEEEehhhccC
Confidence 468999999998644
No 91
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.31 E-value=0.00077 Score=68.33 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-ccc-ceEEecCc-cchHHHHHHHHHHhhhhhhhccC---CChhHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-AKR-AWIRVRGD-AKFRDVLIDILQQIDDETLVEAS---APEADLVSSL 77 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~~~l 77 (692)
+.++|+|.+|+|||||++.+++. +.... +.. +|+-+.+. -.+.++++.+...+......+.. .........+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999998 54444 443 56566554 35677777777766554321111 1111122223
Q ss_pred HHHh--ccccEEEEEeCCCCc
Q 048083 78 TTLL--KEISYLIVVEDVETP 96 (692)
Q Consensus 78 ~~~L--~~k~~LlVLDdv~~~ 96 (692)
.+++ ++++++||+|++...
T Consensus 212 Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHcCCCEEEEEeCcHHH
Confidence 3333 578999999998753
No 92
>PF14516 AAA_35: AAA-like domain
Probab=97.31 E-value=0.0034 Score=64.36 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhh-cccccceEEecCc-----cchHHHHHHHHHHhhhhhh-----h----ccCC
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKR-HFAKRAWIRVRGD-----AKFRDVLIDILQQIDDETL-----V----EASA 68 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~F~~~~wv~~~~~-----~~~~~~~~~i~~~l~~~~~-----~----~~~~ 68 (692)
+.+.|.|+-.+|||+|..++.+. .++ .|. ++++++... .+..+.++.+...+..+-. . +...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~--l~~~~~~-~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLER--LQQQGYR-CVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHH--HHHCCCE-EEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 46899999999999999999888 433 333 456665432 2344445444444433221 0 0122
Q ss_pred ChhHHHHHHHHHh---ccccEEEEEeCCCCccc------------------------cccc--CCCCc------------
Q 048083 69 PEADLVSSLTTLL---KEISYLIVVEDVETPQV------------------------CNPN--NIPPE------------ 107 (692)
Q Consensus 69 ~~~~~~~~l~~~L---~~k~~LlVLDdv~~~~~------------------------~~~~--~~~~~------------ 107 (692)
........+.+.+ .+++++|+||+|+..-. |..+ .+.+.
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~S 188 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQS 188 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCC
Confidence 3334445555543 25799999999986321 2211 00000
Q ss_pred ccccCCccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCC
Q 048083 108 AEAAGPTLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKE 181 (692)
Q Consensus 108 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~ 181 (692)
....+..++|++++.+|..+|..++...- . ....+.|...++|+|--+..++..+....
T Consensus 189 PFNIg~~i~L~~Ft~~ev~~L~~~~~~~~------------~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~~ 247 (331)
T PF14516_consen 189 PFNIGQPIELPDFTPEEVQELAQRYGLEF------------S---QEQLEQLMDWTGGHPYLVQKACYLLVEEQ 247 (331)
T ss_pred CcccccceeCCCCCHHHHHHHHHhhhccC------------C---HHHHHHHHHHHCCCHHHHHHHHHHHHHcc
Confidence 11234456999999999999998774221 1 11278999999999999999999987754
No 93
>PRK07261 topology modulation protein; Provisional
Probab=97.27 E-value=0.00065 Score=62.32 Aligned_cols=23 Identities=52% Similarity=0.709 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998763
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.24 E-value=0.00096 Score=74.84 Aligned_cols=29 Identities=38% Similarity=0.631 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHF 33 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F 33 (692)
+.-+.|+|++|+||||+|+.+++. ....|
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~--~~~~f 80 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANH--TRAHF 80 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--hcCcc
Confidence 345789999999999999999987 44444
No 95
>PRK08116 hypothetical protein; Validated
Probab=97.24 E-value=0.00093 Score=66.05 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=44.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKEI 84 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 84 (692)
-+.|+|.+|+|||.||.++++. +..+-..++++++ .+++..+....... .... ...+.+.+.+-
T Consensus 116 gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~----~~~~----~~~~~~~l~~~ 179 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSS----GKED----ENEIIRSLVNA 179 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhcc----cccc----HHHHHHHhcCC
Confidence 4789999999999999999999 5444333455543 33444443333211 1111 22234445544
Q ss_pred cEEEEEeCCCC
Q 048083 85 SYLIVVEDVET 95 (692)
Q Consensus 85 ~~LlVLDdv~~ 95 (692)
. ||||||+..
T Consensus 180 d-lLviDDlg~ 189 (268)
T PRK08116 180 D-LLILDDLGA 189 (268)
T ss_pred C-EEEEecccC
Confidence 4 899999853
No 96
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.23 E-value=0.0012 Score=64.85 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=64.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL 81 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 81 (692)
++.-+.+||++|.||||||+-+.....-.+ ..||..+.......-.++|.++-.. ...+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~-----------------~~~l 219 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN-----------------EKSL 219 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH-----------------HHhh
Confidence 345678999999999999999998843222 4567766543322222222222111 1124
Q ss_pred ccccEEEEEeCCCC--ccccccc-CC-CCc------c-------------cccCCccccCCCCHHHHHHHHHhh
Q 048083 82 KEISYLIVVEDVET--PQVCNPN-NI-PPE------A-------------EAAGPTLHLSRLNKEESWKLLLKK 132 (692)
Q Consensus 82 ~~k~~LlVLDdv~~--~~~~~~~-~~-~~~------~-------------~~~~~~~~l~~L~~~ea~~Lf~~~ 132 (692)
.++|..|.+|.|.. ..|-+.+ +- -.+ + .....++-++.|..++-..++.+.
T Consensus 220 ~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 56788999999965 2221222 10 011 1 112334588999999988888874
No 97
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.20 E-value=0.00047 Score=62.29 Aligned_cols=123 Identities=22% Similarity=0.221 Sum_probs=71.3
Q ss_pred EEEeecCCCCCCCChhhhc-cccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhh-ccccCceeecccc
Q 048083 366 TVLDLEGVYKPKLSDHVIG-KLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIW-KAKKLQHLYLNWI 443 (692)
Q Consensus 366 ~~L~L~~~~~~~l~~~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~l~~~ 443 (692)
+.++|.+.++..+.. ++ .+.+...+||++|.+..++. +..+++|.+|.+.+|.|+.+-..+. .+++|..|.+.+|
T Consensus 22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhh--ccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 445555554432221 12 23456667777777766654 5667778888888887777744443 3566788888777
Q ss_pred cccccc--cccCCCcccccccccccCCCc--cccccccccccccccccccccc
Q 048083 444 HSAISW--LNFSSLNNLQTLWGLSMGDDS--LFNQTFDFTKLASLRKLGVKCY 492 (692)
Q Consensus 444 ~~~~~~--~~i~~l~~L~~L~~~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~ 492 (692)
.+.++. ..+..++.|+.|..+.-.-.. ... ..-+..+++|+.|+....
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR-~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYR-LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCce-eEEEEecCcceEeehhhh
Confidence 766432 234455555555433322222 111 113677888888888765
No 98
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.20 E-value=0.00025 Score=61.10 Aligned_cols=22 Identities=50% Similarity=0.788 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
||+|.|++|+||||+|++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999997
No 99
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.19 E-value=3e-05 Score=84.99 Aligned_cols=237 Identities=20% Similarity=0.138 Sum_probs=112.1
Q ss_pred cccccceeeccCC-Cccc--cCccccCCCCCeEEecCCc--cceecC----hhhhccccCceeecccccccccccccCCC
Q 048083 385 KLLHLSYLGLRST-FIDS--LPNSVGNLRYLETLDVKHT--KLRYLP----DSIWKAKKLQHLYLNWIHSAISWLNFSSL 455 (692)
Q Consensus 385 ~l~~L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~L~~~--~l~~lp----~~~~~l~~L~~L~l~~~~~~~~~~~i~~l 455 (692)
.++.|+.|.+.++ .+.. +-+....+++|+.|++++| .....+ .....+++|+.|+++++...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i--------- 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV--------- 256 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc---------
Confidence 3566666666655 3332 2233456777777777763 222111 22344566666666655420
Q ss_pred cccccccccccCCCccccccccc-ccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCC-cc-ccCCCCCCC
Q 048083 456 NNLQTLWGLSMGDDSLFNQTFDF-TKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRD-DY-SDIPFKAQA 532 (692)
Q Consensus 456 ~~L~~L~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~-~~~~l~~~~ 532 (692)
+.. .+. .+ ..+++|+.|.+..|.......+..+...|++|++|++++|... +. .......++
T Consensus 257 -----------sd~-~l~---~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 257 -----------TDI-GLS---ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred -----------Cch-hHH---HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 000 011 11 1245666666555543444555555556667777777777432 11 111233455
Q ss_pred CccEEEEccccccccccccCccCccceeeeeccCCC---CCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEE
Q 048083 533 NLQELYLRGALRMFSAKTSSFPRNLKIVTLSMSRLY---WDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVL 609 (692)
Q Consensus 533 ~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 609 (692)
+|+.|.+..... . +.++.+.+.++... ....-.+..+++|+.+.+..+....... .+
T Consensus 322 ~l~~l~~~~~~~--------c-~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------~~ 381 (482)
T KOG1947|consen 322 NLRELKLLSLNG--------C-PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL-----------EL 381 (482)
T ss_pred chhhhhhhhcCC--------C-ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch-----------HH
Confidence 555554443211 2 45555555554321 1122234567777777776655322221 22
Q ss_pred EeccCCCC-cEEEecCCCccccceeecccccccC--CCcChhh-hhccCcEEEEecCchHH
Q 048083 610 KLWNLSSL-EEWTVQEAAMPRLRELEIRSCNKLK--PPEGLRN-LAATLKDIVLTNMPSTF 666 (692)
Q Consensus 610 ~l~~~~~l-~~l~~~~~~~~~L~~L~l~~c~~l~--~p~~~~~-l~~sL~~L~i~~c~~~~ 666 (692)
.+.+|+.+ ..+..-...+.+|+.|++..|...+ .-..... ... +..+++.+|+...
T Consensus 382 ~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~-~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 382 SLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSN-LKDLDLSGCRVIT 441 (482)
T ss_pred HhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhc-cccCCccCccccc
Confidence 23333333 1111111222336777777776655 1111111 444 6667777776333
No 100
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.00047 Score=59.89 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhc-ccccceE
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRH-FAKRAWI 39 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~-F~~~~wv 39 (692)
.|+|+||+|+||||+++++.+. ++.. |....|+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~--L~~~g~kvgGf~ 40 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEK--LREKGYKVGGFI 40 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHH--HHhcCceeeeEE
Confidence 5799999999999999999988 5444 7655444
No 101
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.05 E-value=0.0022 Score=62.83 Aligned_cols=90 Identities=13% Similarity=0.206 Sum_probs=64.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhccc------ccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFA------KRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSS 76 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 76 (692)
..-+.|+|-+|+|||++++++.++. -..++ .++.|.....++...+...|+..++.... ...........
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~h--p~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~--~~~~~~~~~~~ 136 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLH--PPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR--PRDRVAKLEQQ 136 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHC--CCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC--CCCCHHHHHHH
Confidence 3457899999999999999998773 22332 24456777888999999999999998765 34444444455
Q ss_pred HHHHhcc-ccEEEEEeCCCCc
Q 048083 77 LTTLLKE-ISYLIVVEDVETP 96 (692)
Q Consensus 77 l~~~L~~-k~~LlVLDdv~~~ 96 (692)
+...++. +-=+||+|.+.+.
T Consensus 137 ~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 137 VLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred HHHHHHHcCCcEEEeechHHH
Confidence 5555543 3348999999763
No 102
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.04 E-value=0.0026 Score=66.46 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.|+|++|+|||++|++++++
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 34889999999999999999998
No 103
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.04 E-value=0.0023 Score=61.98 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEec
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVR 42 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 42 (692)
+.|.|+|.+|+|||+||++++++ ........++++++
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLA 75 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHH
Confidence 46889999999999999999988 43333334555544
No 104
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.03 E-value=0.0017 Score=63.29 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccce-EEecCcc-chHHHHHHHHHHhhhh-hh---hccCCC------hh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAW-IRVRGDA-KFRDVLIDILQQIDDE-TL---VEASAP------EA 71 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~w-v~~~~~~-~~~~~~~~i~~~l~~~-~~---~~~~~~------~~ 71 (692)
+.++|.|-.|.||||||+.+++. ++.+|+.+++ +-+.+.. ...++...+...=..+ .. ...... ..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 56899999999999999999999 7777766554 4555443 3344444443321000 00 001111 11
Q ss_pred HHHHHHHHHh--c-cccEEEEEeCCCC
Q 048083 72 DLVSSLTTLL--K-EISYLIVVEDVET 95 (692)
Q Consensus 72 ~~~~~l~~~L--~-~k~~LlVLDdv~~ 95 (692)
...-.+.+++ + ++.+|+|+||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 2233355555 3 8899999999865
No 105
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.03 E-value=0.0029 Score=60.48 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVL 51 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 51 (692)
+++.|+|.+|+|||++|.+++.. ....-..++|++... ++...+.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHH
Confidence 68899999999999999999887 444456789998865 4444433
No 106
>PRK12377 putative replication protein; Provisional
Probab=97.03 E-value=0.0014 Score=63.51 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
.-+.|+|.+|+|||.||.++++. .......++++++
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~ 137 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTV 137 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEH
Confidence 46789999999999999999999 5444444566654
No 107
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.02 E-value=0.0014 Score=63.49 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHH----hhhhhhhccCCChhH---HHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQ----IDDETLVEASAPEAD---LVSS 76 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~~---~~~~ 76 (692)
.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+ ..+... +.....-....+..+ ..+.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK 99 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence 58899999999999999999987 44444668899876 4443332 222222 110000001122222 2333
Q ss_pred HHHHhccccEEEEEeCCC
Q 048083 77 LTTLLKEISYLIVVEDVE 94 (692)
Q Consensus 77 l~~~L~~k~~LlVLDdv~ 94 (692)
+...++.+.-++|+|.+.
T Consensus 100 ~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 100 AEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHhcccEEEEeCcH
Confidence 444444566789999765
No 108
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.02 E-value=0.0016 Score=60.93 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=51.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc-cchHHHHHHHHHHhhhhhhhc-cCCChhHHHHHHHHHh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD-AKFRDVLIDILQQIDDETLVE-ASAPEADLVSSLTTLL 81 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~L 81 (692)
+||.++|+.|+||||.+.+++.. .+.+=..+..++.+.. ....+.++..++.+....... ...+..+......+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 68999999999999999999888 4434233667776432 344566777777777543210 1222333333333333
Q ss_pred ccc-cEEEEEeCC
Q 048083 82 KEI-SYLIVVEDV 93 (692)
Q Consensus 82 ~~k-~~LlVLDdv 93 (692)
+.+ .=+|++|=.
T Consensus 80 ~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 80 RKKGYDLVLIDTA 92 (196)
T ss_dssp HHTTSSEEEEEE-
T ss_pred hhcCCCEEEEecC
Confidence 333 346777744
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.02 E-value=0.0066 Score=58.15 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccc--cceEE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAK--RAWIR 40 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~--~~wv~ 40 (692)
..+-|+|..|+|||.|.+++++. +...... +++++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS 71 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec
Confidence 45789999999999999999999 6555443 34444
No 110
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.02 E-value=0.00099 Score=61.69 Aligned_cols=35 Identities=37% Similarity=0.676 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIR 40 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 40 (692)
.+|.|.|+.|+||||+|+++++. ....+...++++
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 48999999999999999999998 666666666664
No 111
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.0031 Score=59.57 Aligned_cols=159 Identities=20% Similarity=0.223 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEec-CccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh-
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVR-GDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL- 81 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L- 81 (692)
.++.++|.-|.|||.+++++... .. =+.++=|.++ ...+...+...+...+..+..-......++....+....
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s--~~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLAS--LN--EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHh--cC--CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 48999999999999999965544 21 1223323333 334566777777777776222101112233333344433
Q ss_pred cccc-EEEEEeCCCCc--cccccc-------------------CCCCc------------ccccCCccccCCCCHHHHHH
Q 048083 82 KEIS-YLIVVEDVETP--QVCNPN-------------------NIPPE------------AEAAGPTLHLSRLNKEESWK 127 (692)
Q Consensus 82 ~~k~-~LlVLDdv~~~--~~~~~~-------------------~~~~~------------~~~~~~~~~l~~L~~~ea~~ 127 (692)
++++ +.++.||..+. ++++.+ +-|.- ...+...|++++++.++...
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~ 207 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGL 207 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHH
Confidence 4566 89999998652 111111 11110 11223337999999998888
Q ss_pred HHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHh
Q 048083 128 LLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLG 174 (692)
Q Consensus 128 Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g 174 (692)
.+.....+. +. ...---.+....|.+...|.|.++..++
T Consensus 208 yl~~~Le~a---~~-----~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 208 YLRHRLEGA---GL-----PEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHhcc---CC-----CcccCChhHHHHHHHHhccchHHHHHHH
Confidence 777665433 32 2222233456778889999999988766
No 112
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.00 E-value=0.003 Score=61.24 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc------cccceEEecCccchHHHHHHHHHHhhhhhh---h----ccCCCh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF------AKRAWIRVRGDAKFRDVLIDILQQIDDETL---V----EASAPE 70 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~----~~~~~~ 70 (692)
+++.|+|.+|+|||++|.+++.. ....- ..++|++....++...+. .+.+....... . ....+.
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 58999999999999999999876 32233 457888877666554433 33333221100 0 022344
Q ss_pred hHHHHHHHHHhc----cccEEEEEeCCCC
Q 048083 71 ADLVSSLTTLLK----EISYLIVVEDVET 95 (692)
Q Consensus 71 ~~~~~~l~~~L~----~k~~LlVLDdv~~ 95 (692)
++....+..... .+--|||+|.+..
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 555555555443 3445899998764
No 113
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.99 E-value=0.01 Score=63.40 Aligned_cols=145 Identities=14% Similarity=0.166 Sum_probs=82.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKEI 84 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 84 (692)
-+.|+|..|.|||.|++++++. +.......-.+.+ +..++...+...+.... +..+.+++.++.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv----~~~~f~~~~~~~l~~~~---------~~~~~~~~~~~~- 206 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYM----SGDEFARKAVDILQKTH---------KEIEQFKNEICQ- 206 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEE----EHHHHHHHHHHHHHHhh---------hHHHHHHHHhcc-
Confidence 4789999999999999999997 4433322222222 22345555555543210 112334444443
Q ss_pred cEEEEEeCCCCcc---ccc-cc------------------CCCCc-----------ccccCCccccCCCCHHHHHHHHHh
Q 048083 85 SYLIVVEDVETPQ---VCN-PN------------------NIPPE-----------AEAAGPTLHLSRLNKEESWKLLLK 131 (692)
Q Consensus 85 ~~LlVLDdv~~~~---~~~-~~------------------~~~~~-----------~~~~~~~~~l~~L~~~ea~~Lf~~ 131 (692)
.-+||+||+.... .++ .+ ..++. ....+..+++++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 3478889996532 110 11 01111 112244457999999999999988
Q ss_pred hccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHh
Q 048083 132 KVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLG 174 (692)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g 174 (692)
++-.. + ....--++...-|++.++|.|-.+.-+.
T Consensus 287 ~~~~~---g------l~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQ---N------IKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhc---C------CCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 87332 2 1011224567788888898886665444
No 114
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.96 E-value=0.0031 Score=59.05 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+.++|+.|+||||+|+.+.+.
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~ 37 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKA 37 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999887
No 115
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.93 E-value=0.0042 Score=60.33 Aligned_cols=37 Identities=11% Similarity=0.267 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEec
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVR 42 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 42 (692)
..+.|+|+.|+|||+||+++++. ....-..+.++++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~ 82 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLD 82 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHH
Confidence 46889999999999999999987 44332335566654
No 116
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.0046 Score=64.37 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.++|+.|+||||+|+.+++..
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHh
Confidence 46899999999999999998873
No 117
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.89 E-value=0.00012 Score=80.24 Aligned_cols=237 Identities=20% Similarity=0.175 Sum_probs=122.7
Q ss_pred CCcceEEEEeecCCC-CCC--CChhhhccccccceeeccCC--Ccccc----CccccCCCCCeEEecCCcc-ceec--Ch
Q 048083 360 RGLVLLTVLDLEGVY-KPK--LSDHVIGKLLHLSYLGLRST--FIDSL----PNSVGNLRYLETLDVKHTK-LRYL--PD 427 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~-~~~--l~~~~~~~l~~L~~L~l~~~--~i~~l----p~~~~~l~~L~~L~L~~~~-l~~l--p~ 427 (692)
..+++|+.|.+.++. +.. +-+. ...+++|+.|+++++ .+... ......+.+|+.|+++.|. ++.. ..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDAL-ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHH-HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 456777777777664 222 2222 556677777777652 11111 1223456777777777774 5522 11
Q ss_pred hhhccccCceeecccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhcc
Q 048083 428 SIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRS 507 (692)
Q Consensus 428 ~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~ 507 (692)
....+++|++|.+.+|... ....... -...+++|++|+++.|.......+......|
T Consensus 264 l~~~c~~L~~L~l~~c~~l--------------------t~~gl~~---i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNL--------------------TDEGLVS---IAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred HHhhCCCcceEccCCCCcc--------------------chhHHHH---HHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 1223667777765555310 0000000 1234455666666655333333333333445
Q ss_pred CCcceEEeeeccCCccccCCCCCCCCccEEEEccccc----cc-cccccCccCccceeeeeccCCCCCc-hhhhhcCCCC
Q 048083 508 TRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALR----MF-SAKTSSFPRNLKIVTLSMSRLYWDP-MEALEKLCHL 581 (692)
Q Consensus 508 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~----~~-p~~~~~l~~~L~~L~L~~~~l~~~~-~~~l~~l~~L 581 (692)
++++.|.+..... ++.++.+.+.++.. .. ....... ++++.+.+..|...... ...+.++++|
T Consensus 321 ~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 321 PNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSC-PKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred cchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcC-CCcchhhhhhhhccCcchHHHhcCCccc
Confidence 5666655544321 44555555554331 11 1123344 78888888888754444 3456677777
Q ss_pred CeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEecCC--CccccceeecccccccC
Q 048083 582 NILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEA--AMPRLRELEIRSCNKLK 642 (692)
Q Consensus 582 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~--~~~~L~~L~l~~c~~l~ 642 (692)
. ..+.... ..+..++.|.+..|...+.-..... .+.+++.+++.+|+.+.
T Consensus 390 ~-~~l~~~~----------~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 390 T-ESLELRL----------CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred c-hHHHHHh----------ccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 3 3332111 1223388888888766554322211 15678888888888776
No 118
>PTZ00202 tuzin; Provisional
Probab=96.88 E-value=0.003 Score=64.67 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=50.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh--
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL-- 81 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-- 81 (692)
++++|+|++|+|||||++.+..... + ..++++.. ...+.+..++++|+.... ....++.+.|.+.+
T Consensus 287 rivvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~LL~ALGV~p~----~~k~dLLrqIqeaLl~ 354 (550)
T PTZ00202 287 RIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSVVKALGVPNV----EACGDLLDFISEACRR 354 (550)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHHHHHcCCCCc----ccHHHHHHHHHHHHHH
Confidence 5889999999999999999998733 1 13333333 568999999999996322 22233444444433
Q ss_pred ---c-cccEEEEEe
Q 048083 82 ---K-EISYLIVVE 91 (692)
Q Consensus 82 ---~-~k~~LlVLD 91 (692)
. +++.+||+-
T Consensus 355 ~~~e~GrtPVLII~ 368 (550)
T PTZ00202 355 AKKMNGETPLLVLK 368 (550)
T ss_pred HHHhCCCCEEEEEE
Confidence 2 567777764
No 119
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.0039 Score=70.07 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=32.4
Q ss_pred ccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCch-HHHHH
Q 048083 114 TLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPL-HISLL 173 (692)
Q Consensus 114 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~ 173 (692)
.+++.+++.++-.+.+.+.+-.. + .....+....|++.++|.|- |+.++
T Consensus 172 ~f~fkpLs~eEI~~~L~~il~~E---g--------I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 172 QFNLKSLTQDEIGTQLNHILTQE---Q--------LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHc---C--------CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45899999999998887765221 1 11223456788899999774 44443
No 120
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.87 E-value=0.0021 Score=64.56 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|||++|.|||.+|++++.+
T Consensus 149 lgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999
No 121
>PLN03025 replication factor C subunit; Provisional
Probab=96.84 E-value=0.0066 Score=62.14 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..-+.++|++|+||||+|+.+++.
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999999988
No 122
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.82 E-value=0.0052 Score=59.15 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA 45 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~ 45 (692)
+++.|.|.+|+||||+|.+++.. ....=..++|++....+
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLS 59 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCC
Confidence 68899999999999999999887 43333346788765444
No 123
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.0048 Score=66.32 Aligned_cols=23 Identities=43% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.++|+.|+||||+|+.+++..
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999998873
No 124
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0046 Score=66.76 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=73.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh---
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL--- 81 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L--- 81 (692)
.+.++|++|+||||+|+.+++.....+.+...||.+.+... ...........+... .....+++ +.+.+.+
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~~----~~~~vd~i-R~l~~~~~~~ 111 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEIDAA----SNNSVEDV-RDLREKVLLA 111 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEeccc----ccCCHHHH-HHHHHHHhhc
Confidence 45899999999999999998884222223334443321100 000000000000000 01111111 1222222
Q ss_pred --ccccEEEEEeCCCCcc--ccccc-----CCCCc----------------ccccCCccccCCCCHHHHHHHHHhhcccc
Q 048083 82 --KEISYLIVVEDVETPQ--VCNPN-----NIPPE----------------AEAAGPTLHLSRLNKEESWKLLLKKVPVA 136 (692)
Q Consensus 82 --~~k~~LlVLDdv~~~~--~~~~~-----~~~~~----------------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 136 (692)
.+++-++|+|+++... .++.+ ..+.. .......+++.+++.++..+.+.+.+...
T Consensus 112 p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~e 191 (504)
T PRK14963 112 PLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAE 191 (504)
T ss_pred cccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 2455688899987642 12222 11111 00112245899999999999998876433
Q ss_pred ccccCccccCCCchhHHHHHHHHHHHhCCCch
Q 048083 137 TAAESDDDLNNNSESINTFKERILEICGGLPL 168 (692)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 168 (692)
+- .--.+....|++.++|.+-
T Consensus 192 ---gi--------~i~~~Al~~ia~~s~GdlR 212 (504)
T PRK14963 192 ---GR--------EAEPEALQLVARLADGAMR 212 (504)
T ss_pred ---CC--------CCCHHHHHHHHHHcCCCHH
Confidence 21 1123456788889998774
No 125
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0029 Score=61.43 Aligned_cols=80 Identities=18% Similarity=0.440 Sum_probs=49.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccch--hhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDV--KRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL 81 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~--~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 81 (692)
|+|.++|++|.|||+|.+++++...+ .+.|....-+.+... .++ .+...+ ....+..+.+.|.+.+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLF----SKWFsE----SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLF----SKWFSE----SGKLVAKMFQKIQELV 245 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHH----HHHHhh----hhhHHHHHHHHHHHHH
Confidence 68999999999999999999999754 355555555544321 222 222221 2223445566666666
Q ss_pred cccc--EEEEEeCCCC
Q 048083 82 KEIS--YLIVVEDVET 95 (692)
Q Consensus 82 ~~k~--~LlVLDdv~~ 95 (692)
..+. +.+.+|.|..
T Consensus 246 ~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVES 261 (423)
T ss_pred hCCCcEEEEEeHHHHH
Confidence 6554 5566676653
No 126
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.80 E-value=0.0018 Score=59.70 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
+-+.|+|.+|+|||.||.++.+. ...+=..+.|++.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA 83 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec
Confidence 35789999999999999999988 3332123455553
No 127
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0026 Score=68.09 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=44.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKEI 84 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 84 (692)
-|.|.|..|+|||+||+++++... +...-.+.+|+++.-.. +-+..|.+.+. ..+...+.-.
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~--~~~e~iQk~l~---------------~vfse~~~~~ 494 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDG--SSLEKIQKFLN---------------NVFSEALWYA 494 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccc--hhHHHHHHHHH---------------HHHHHHHhhC
Confidence 478999999999999999999843 22222233444443221 11333333222 2344455567
Q ss_pred cEEEEEeCCCC
Q 048083 85 SYLIVVEDVET 95 (692)
Q Consensus 85 ~~LlVLDdv~~ 95 (692)
+.+|||||++-
T Consensus 495 PSiIvLDdld~ 505 (952)
T KOG0735|consen 495 PSIIVLDDLDC 505 (952)
T ss_pred CcEEEEcchhh
Confidence 88999999974
No 128
>PRK08181 transposase; Validated
Probab=96.70 E-value=0.0032 Score=61.94 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
+-|.|+|.+|+|||.||.++.+. .......++|+++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT 142 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH
Confidence 35899999999999999999987 4443334556553
No 129
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.68 E-value=0.0058 Score=55.58 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA 45 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~ 45 (692)
++.|+|.+|+||||+|..++.. ....-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 4789999999999999999988 43332446677765543
No 130
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.68 E-value=0.011 Score=65.72 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
..|.|+|++|+||||+|+.+++..
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998874
No 131
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.65 E-value=0.0028 Score=67.78 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.++|++|.|||++|+++++.
T Consensus 218 GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHh
Confidence 4789999999999999999998
No 132
>PRK08727 hypothetical protein; Validated
Probab=96.63 E-value=0.0083 Score=58.18 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
..|.|+|..|+|||.||+++++. ...+...++|++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~ 77 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPL 77 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeH
Confidence 35899999999999999999988 4444334566664
No 133
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.62 E-value=0.0062 Score=61.17 Aligned_cols=85 Identities=22% Similarity=0.247 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhh---ccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLV---EASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 80 (692)
+++-|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++..... ......++....+...
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 68899999999999999998887 43332346788776655542 23333322110 0334455566556555
Q ss_pred hc-cccEEEEEeCCCC
Q 048083 81 LK-EISYLIVVEDVET 95 (692)
Q Consensus 81 L~-~k~~LlVLDdv~~ 95 (692)
++ +.--+||+|-|-.
T Consensus 129 i~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 129 VRSGAVDIIVVDSVAA 144 (321)
T ss_pred hhccCCcEEEEcchhh
Confidence 53 4567899998764
No 134
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.61 E-value=0.0072 Score=58.05 Aligned_cols=88 Identities=16% Similarity=0.258 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecC-----ccchHHHHHHHHHHhhhhhh--hc--cCCChhHH-
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRG-----DAKFRDVLIDILQQIDDETL--VE--ASAPEADL- 73 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~--~~--~~~~~~~~- 73 (692)
.++||+|..|.||||+|+.+..=. .-. .+.+++.-.. .....+....++..++.... .. ...+-.+.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~--~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLE--EPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCc--CCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 579999999999999999999873 222 3333333111 11233445555665553322 00 11112222
Q ss_pred HHHHHHHhccccEEEEEeCCC
Q 048083 74 VSSLTTLLKEISYLIVVEDVE 94 (692)
Q Consensus 74 ~~~l~~~L~~k~~LlVLDdv~ 94 (692)
.-.|.+.|.-++-++|.|.--
T Consensus 117 Ri~IARALal~P~liV~DEpv 137 (268)
T COG4608 117 RIGIARALALNPKLIVADEPV 137 (268)
T ss_pred hHHHHHHHhhCCcEEEecCch
Confidence 223778889999999999754
No 135
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.01 Score=64.28 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|+.|+||||+|+.+++.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999875
No 136
>PRK06921 hypothetical protein; Provisional
Probab=96.59 E-value=0.0071 Score=59.68 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhc-ccccceEEe
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRH-FAKRAWIRV 41 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-F~~~~wv~~ 41 (692)
.-+.++|..|+|||.||.++++. +..+ -..++|++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 46899999999999999999998 5443 233556654
No 137
>PRK09183 transposase/IS protein; Provisional
Probab=96.59 E-value=0.0049 Score=60.66 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|.|+|.+|+|||+||.+++..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 45789999999999999999876
No 138
>PRK06526 transposase; Provisional
Probab=96.59 E-value=0.0049 Score=60.29 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.-|.|+|.+|+|||+||.++....
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH
Confidence 457999999999999999998873
No 139
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.58 E-value=0.011 Score=57.77 Aligned_cols=47 Identities=30% Similarity=0.394 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhc----ccccceEEecCccchHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRH----FAKRAWIRVRGDAKFRDV 50 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~ 50 (692)
+++.|+|.+|+|||++|.+++........ -..++|++....++.+.+
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 68899999999999999999755222221 256889987776655443
No 140
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.008 Score=65.32 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.++|..|+||||+|+.+.+..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998763
No 141
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.58 E-value=0.0015 Score=56.87 Aligned_cols=21 Identities=52% Similarity=0.759 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|+|.|++|+||||+|+++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999998
No 142
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.57 E-value=0.008 Score=58.20 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=43.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
.-+.++|.+|+|||+||.++++. ....-..++++++ .+++..+...... ...... .+.+.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~-----~~~~~~----~~l~~l~- 161 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN-----SETSEE----QLLNDLS- 161 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh-----ccccHH----HHHHHhc-
Confidence 46789999999999999999998 4333333455543 3444333332210 111122 2333344
Q ss_pred ccEEEEEeCCCCc
Q 048083 84 ISYLIVVEDVETP 96 (692)
Q Consensus 84 k~~LlVLDdv~~~ 96 (692)
+-=+|||||+...
T Consensus 162 ~~dlLvIDDig~~ 174 (244)
T PRK07952 162 NVDLLVIDEIGVQ 174 (244)
T ss_pred cCCEEEEeCCCCC
Confidence 3447888998653
No 143
>PRK09087 hypothetical protein; Validated
Probab=96.55 E-value=0.014 Score=56.11 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.+.|||..|+|||+|++.++.+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999876
No 144
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.55 E-value=0.0062 Score=64.92 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=43.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccc--cceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAK--RAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLK 82 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 82 (692)
-+.|+|.+|+|||.||+++++. +...+.. ++|++. .+....+...+... .. ..+++..+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~----~~f~~~~~ 192 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-------KL----NEFREKYR 192 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cH----HHHHHHHH
Confidence 4789999999999999999998 5555432 455543 23344443333211 11 12233333
Q ss_pred cccEEEEEeCCCC
Q 048083 83 EISYLIVVEDVET 95 (692)
Q Consensus 83 ~k~~LlVLDdv~~ 95 (692)
.+.-+||+||++.
T Consensus 193 ~~~dvLlIDDi~~ 205 (440)
T PRK14088 193 KKVDVLLIDDVQF 205 (440)
T ss_pred hcCCEEEEechhh
Confidence 3445788898874
No 145
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.55 E-value=0.007 Score=60.47 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=46.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc-chHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA-KFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL 81 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 81 (692)
-++|+|+|.+|+||||++.+++.....++.-..+..|+.+... ...+.+....+.+..... ...+..++.+.+.. +
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~-~ 270 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR-L 270 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH-c
Confidence 3589999999999999999998873222111245666654321 112223232332222111 22333444444443 3
Q ss_pred ccccEEEEEeCC
Q 048083 82 KEISYLIVVEDV 93 (692)
Q Consensus 82 ~~k~~LlVLDdv 93 (692)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 457888853
No 146
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.00014 Score=68.68 Aligned_cols=59 Identities=31% Similarity=0.304 Sum_probs=30.4
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc--cccCCCCCeEEecCCc
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN--SVGNLRYLETLDVKHT 420 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~ 420 (692)
.+|+.|+||.|+-|+++.+.+ +..+++|+.|.|+.|.|..+-. .+.++++|++|.|..|
T Consensus 38 ~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 555555555555555554443 4555555555555555444321 2344555555555554
No 147
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.0059 Score=59.75 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=42.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKEI 84 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 84 (692)
=+.++|.+|+|||.||.++.++ +...=-.+.|+++. +++..+....... .....+.+.++.-
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~------el~~~Lk~~~~~~----------~~~~~l~~~l~~~ 168 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITAP------DLLSKLKAAFDEG----------RLEEKLLRELKKV 168 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEHH------HHHHHHHHHHhcC----------chHHHHHHHhhcC
Confidence 4789999999999999999999 55221234555543 4444444433321 1122333333322
Q ss_pred cEEEEEeCCCC
Q 048083 85 SYLIVVEDVET 95 (692)
Q Consensus 85 ~~LlVLDdv~~ 95 (692)
=||||||+--
T Consensus 169 -dlLIiDDlG~ 178 (254)
T COG1484 169 -DLLIIDDIGY 178 (254)
T ss_pred -CEEEEecccC
Confidence 2788999764
No 148
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.012 Score=64.25 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
..+.++|+.|+||||+|+.+++..
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999998873
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.53 E-value=0.0033 Score=66.16 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.++|++|.|||++|++++++
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999998
No 150
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.52 E-value=0.0074 Score=58.47 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|+|..|+|||+||+++++.
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999997
No 151
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.51 E-value=0.0077 Score=60.56 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhh---ccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLV---EASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 80 (692)
+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++..... ....+.++....+...
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 68889999999999999999877 43333457788876665543 23333321110 0333455566556555
Q ss_pred hc-cccEEEEEeCCCC
Q 048083 81 LK-EISYLIVVEDVET 95 (692)
Q Consensus 81 L~-~k~~LlVLDdv~~ 95 (692)
++ +.--+||+|-|-.
T Consensus 129 i~s~~~~lIVIDSvaa 144 (325)
T cd00983 129 VRSGAVDLIVVDSVAA 144 (325)
T ss_pred HhccCCCEEEEcchHh
Confidence 54 3466899998753
No 152
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.50 E-value=0.011 Score=61.32 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+.++|++|+||||+|+++++.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999887
No 153
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.49 E-value=0.00078 Score=63.59 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=19.2
Q ss_pred ccccccceeeccCCCccc-----cCccccCCCCCeEEecCC
Q 048083 384 GKLLHLSYLGLRSTFIDS-----LPNSVGNLRYLETLDVKH 419 (692)
Q Consensus 384 ~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~L~~ 419 (692)
..+..+..++||||.|+. +...+.+-.+|+..+++.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 345666677777776642 223334445555555543
No 154
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.49 E-value=0.002 Score=60.70 Aligned_cols=22 Identities=55% Similarity=0.724 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
||||.|.+|+||||+|+++...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999887
No 155
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.48 E-value=0.002 Score=48.82 Aligned_cols=22 Identities=50% Similarity=0.789 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|+|.|..|+||||+|+++.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 156
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0059 Score=64.43 Aligned_cols=69 Identities=14% Similarity=0.385 Sum_probs=46.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKEI 84 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 84 (692)
=|.++|++|.|||.||++++++.. +=|+.++.. .|...+.+. +++.+.+...+.-...
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~-------vPf~~isAp--------eivSGvSGE-------SEkkiRelF~~A~~~a 282 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELG-------VPFLSISAP--------EIVSGVSGE-------SEKKIRELFDQAKSNA 282 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcC-------CceEeecch--------hhhcccCcc-------cHHHHHHHHHHHhccC
Confidence 367899999999999999999932 335555432 223333332 2334445555566678
Q ss_pred cEEEEEeCCCC
Q 048083 85 SYLIVVEDVET 95 (692)
Q Consensus 85 ~~LlVLDdv~~ 95 (692)
++++++|+++-
T Consensus 283 PcivFiDeIDA 293 (802)
T KOG0733|consen 283 PCIVFIDEIDA 293 (802)
T ss_pred CeEEEeecccc
Confidence 99999999985
No 157
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.0079 Score=61.76 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc--cccceEEecCc-cchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF--AKRAWIRVRGD-AKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F--~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 80 (692)
.+++++|+.|+||||++.+++.. ....+ ..+.+++.... ....+.++...+.+..... ...+..+....+. .
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l~-~ 212 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLALA-E 212 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHHH-H
Confidence 58999999999999999999987 33333 34556654332 2334445555555543322 2223333333333 3
Q ss_pred hccccEEEEEeCCC
Q 048083 81 LKEISYLIVVEDVE 94 (692)
Q Consensus 81 L~~k~~LlVLDdv~ 94 (692)
+.++ -+|++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4444 456688764
No 158
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.44 E-value=0.011 Score=58.53 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc-cchHHHHHHHHHHhhhhhhhc-cCCChhH-HHHHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD-AKFRDVLIDILQQIDDETLVE-ASAPEAD-LVSSLTT 79 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~-~~~~l~~ 79 (692)
.++|+++|++|+||||.+.+++.. .+..=..+.+++.+.. ....+-+....+......... ...+... ....+..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 478999999999999999999877 4333234566665431 111233333344443221100 1112222 2233444
Q ss_pred HhccccEEEEEeCCC
Q 048083 80 LLKEISYLIVVEDVE 94 (692)
Q Consensus 80 ~L~~k~~LlVLDdv~ 94 (692)
....+.=+||+|-.-
T Consensus 150 ~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 150 AKARNIDVVLIDTAG 164 (272)
T ss_pred HHHCCCCEEEEeCCC
Confidence 444445678888654
No 159
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.44 E-value=0.0092 Score=55.02 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++.+.|++|+||||+++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999887
No 160
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.44 E-value=0.0031 Score=55.92 Aligned_cols=35 Identities=37% Similarity=0.364 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIR 40 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 40 (692)
.||.|+|.+|+||||||+++..+ +...-..+++++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 48999999999999999999998 555545556664
No 161
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.014 Score=64.54 Aligned_cols=49 Identities=10% Similarity=-0.028 Sum_probs=31.3
Q ss_pred ccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCc-hHHHHH
Q 048083 114 TLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLP-LHISLL 173 (692)
Q Consensus 114 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~ 173 (692)
.+++..++.++-.+.+.+..... + ..-..+....|++.++|-. -|+.++
T Consensus 172 ~f~Fk~Ls~eeIv~~L~~Il~~E---g--------I~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 172 QFNLKQMPAGHIVSHLERILGEE---R--------IAFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEecCCcCHHHHHHHHHHHHHHc---C--------CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34889999999998888765222 1 1122345677888888744 455553
No 162
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.012 Score=62.94 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|++|+||||+|+.+++.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999887
No 163
>PTZ00301 uridine kinase; Provisional
Probab=96.42 E-value=0.0041 Score=58.83 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|||.|.+|+||||||+++..+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 468999999999999999999877
No 164
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.0059 Score=56.96 Aligned_cols=24 Identities=46% Similarity=0.660 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.+|||.|.+|+||||+|+.++..
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHH
Confidence 468999999999999999999988
No 165
>PRK04195 replication factor C large subunit; Provisional
Probab=96.41 E-value=0.0073 Score=65.56 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.+.|+|++|+||||+|++++++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999998
No 166
>PRK09354 recA recombinase A; Provisional
Probab=96.38 E-value=0.011 Score=59.95 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhh---ccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLV---EASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 80 (692)
+++-|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++..... ......++....+...
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTL 133 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 68889999999999999999887 43333457888877766642 23444322110 0333455666555555
Q ss_pred hc-cccEEEEEeCCCC
Q 048083 81 LK-EISYLIVVEDVET 95 (692)
Q Consensus 81 L~-~k~~LlVLDdv~~ 95 (692)
++ ++--+||+|-|-.
T Consensus 134 i~s~~~~lIVIDSvaa 149 (349)
T PRK09354 134 VRSGAVDLIVVDSVAA 149 (349)
T ss_pred hhcCCCCEEEEeChhh
Confidence 54 3466899998764
No 167
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.38 E-value=0.0088 Score=60.73 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
.-+.++|..|+|||.||.++++. +...-..++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 45789999999999999999998 4333223455554
No 168
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.37 E-value=0.009 Score=60.15 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
+-+.|+|..|+|||.||.++++. ....=..+.|+++
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~ 192 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF 192 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH
Confidence 45789999999999999999999 4333233456554
No 169
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.37 E-value=0.009 Score=63.46 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccc--cceEE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAK--RAWIR 40 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~--~~wv~ 40 (692)
..+.|+|..|+|||.||+++++. +...... +++++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE
Confidence 35789999999999999999998 5555433 34444
No 170
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00039 Score=65.80 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=82.7
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecC--hhhhccccCce
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLP--DSIWKAKKLQH 437 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~ 437 (692)
+.+.+.+.|++-||.+.++.- +.+|+.|++|.|+-|.|+.+.+ +..|++|+.|.|+.|.|..+- ..+.++++|+.
T Consensus 16 sdl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 456788889999999887654 5789999999999999999876 889999999999999988774 46889999999
Q ss_pred eeccccccc-cccc-----ccCCCcccccccccccCC
Q 048083 438 LYLNWIHSA-ISWL-----NFSSLNNLQTLWGLSMGD 468 (692)
Q Consensus 438 L~l~~~~~~-~~~~-----~i~~l~~L~~L~~~~~~~ 468 (692)
|-|..|+-. .-+. -+.-|++|++|+...+..
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vte 129 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTE 129 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCccccH
Confidence 999887644 1111 134567777776544433
No 171
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.022 Score=58.14 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...++|+.|+||||+|++++..
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~ 49 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALK 49 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHH
Confidence 5578999999999999999885
No 172
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.35 E-value=0.0088 Score=64.41 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAK 35 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~ 35 (692)
.-+.|+|.+|+|||+||+++++. +...+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~ 178 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNY--ILEKNPN 178 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHhCCC
Confidence 45789999999999999999999 6665533
No 173
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.013 Score=61.90 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|+.|+||||+|+.+++.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999887
No 174
>PRK04296 thymidine kinase; Provisional
Probab=96.29 E-value=0.0041 Score=58.17 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=46.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
.++.|+|..|.||||+|..++.+ ....-..++.+. ..++.+.....++++++............+..+.+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47789999999999999999988 433333333342 1112122233344444321110012233444444444 233
Q ss_pred ccEEEEEeCCC
Q 048083 84 ISYLIVVEDVE 94 (692)
Q Consensus 84 k~~LlVLDdv~ 94 (692)
+.-+||+|.+.
T Consensus 78 ~~dvviIDEaq 88 (190)
T PRK04296 78 KIDCVLIDEAQ 88 (190)
T ss_pred CCCEEEEEccc
Confidence 44589999873
No 175
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0093 Score=54.19 Aligned_cols=28 Identities=32% Similarity=0.582 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF 33 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F 33 (692)
..|.+.|.+|+||||+|++++.. .++.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~--L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE--LRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH--HHHhh
Confidence 46788999999999999999987 44443
No 176
>PRK08233 hypothetical protein; Provisional
Probab=96.28 E-value=0.0033 Score=58.59 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999987
No 177
>PRK06762 hypothetical protein; Provisional
Probab=96.28 E-value=0.0032 Score=57.60 Aligned_cols=23 Identities=48% Similarity=0.784 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|++|+||||+|+++.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999987
No 178
>PRK05642 DNA replication initiation factor; Validated
Probab=96.26 E-value=0.027 Score=54.66 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
..+.|+|..|+|||.||+++++. ....-..++|++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeH
Confidence 35789999999999999999987 4333234566664
No 179
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.057 Score=53.69 Aligned_cols=26 Identities=35% Similarity=0.644 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcccchhhcc
Q 048083 6 IAILGERGSGKTTLARTVYDRVDVKRHF 33 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~~~~~~~F 33 (692)
|.++|++|.|||-||++++++ ....|
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~--T~AtF 213 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQ--TDATF 213 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhc--cCceE
Confidence 678999999999999999999 44443
No 180
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.026 Score=58.99 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-+.++|+.|+|||++|+.+++.
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999775
No 181
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.24 E-value=0.018 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
||.|.|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 182
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.23 E-value=0.01 Score=64.12 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=46.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
+|..++|++|+||||||.-++++. .|. ++=|+.|..-+...+-..|...+..... ..+ ..
T Consensus 327 KilLL~GppGlGKTTLAHViAkqa----GYs-VvEINASDeRt~~~v~~kI~~avq~~s~--l~a-------------ds 386 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQA----GYS-VVEINASDERTAPMVKEKIENAVQNHSV--LDA-------------DS 386 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhc----Cce-EEEecccccccHHHHHHHHHHHHhhccc--ccc-------------CC
Confidence 688899999999999999999982 332 4445555554444444444443332211 000 14
Q ss_pred ccEEEEEeCCCCc
Q 048083 84 ISYLIVVEDVETP 96 (692)
Q Consensus 84 k~~LlVLDdv~~~ 96 (692)
++.-||+|.++-.
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 6778999999864
No 183
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.23 E-value=0.022 Score=58.52 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...+.|+|.+|+||||+|+.+++.
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999988
No 184
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.026 Score=62.17 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|..|+||||+|+.+++.
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999886
No 185
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.20 E-value=0.0072 Score=54.87 Aligned_cols=103 Identities=19% Similarity=0.207 Sum_probs=52.3
Q ss_pred CcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCC-chhhhhcCCCCCeeee
Q 048083 509 RLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWD-PMEALEKLCHLNILRI 586 (692)
Q Consensus 509 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~l 586 (692)
+...+++++|++.. ...+..++.|..|.+.++. ..+...+..+.++|+.|.|.+|.+... ....+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 55556666664332 2334555566666666655 444334444436666666666655321 2334556666666666
Q ss_pred cCCccCccEE--EEecCCCCcccEEEecc
Q 048083 587 IGEAYEGKKM--TCQAGGFPQLRVLKLWN 613 (692)
Q Consensus 587 ~~~~~~~~~~--~~~~~~~~~L~~L~l~~ 613 (692)
-+|......- ......+|+|+.|+..+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 6554432110 01122355666665544
No 186
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0028 Score=59.97 Aligned_cols=82 Identities=21% Similarity=0.212 Sum_probs=39.9
Q ss_pred cccccceeeccCCCccccCccccCCCCCeEEecCCc--cce-ecChhhhccccCceeecccccccccccccCCCcccccc
Q 048083 385 KLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHT--KLR-YLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTL 461 (692)
Q Consensus 385 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~--~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L 461 (692)
....|++|++.+..++.+.. +-.|++|+.|.++.| ++. .++.-..++++|++|++++|.+.. +..+.-++.|+.|
T Consensus 41 ~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcch
Confidence 34445555555443333221 223566666666666 443 444444455666666666665532 3333334444444
Q ss_pred cccccCC
Q 048083 462 WGLSMGD 468 (692)
Q Consensus 462 ~~~~~~~ 468 (692)
..+++..
T Consensus 119 ~~Ldl~n 125 (260)
T KOG2739|consen 119 KSLDLFN 125 (260)
T ss_pred hhhhccc
Confidence 4334333
No 187
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.0023 Score=60.55 Aligned_cols=108 Identities=21% Similarity=0.177 Sum_probs=53.6
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCC--Cc-cccCccccCCCCCeEEecCCccceecC--hhhhcccc
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRST--FI-DSLPNSVGNLRYLETLDVKHTKLRYLP--DSIWKAKK 434 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~--~i-~~lp~~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~ 434 (692)
..+..|+.|.+.++.++.+.. +-.|++|++|.++.| .+ ..++....++++|++|++++|++..+. ..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 344445555555554443322 445566666666665 22 334443445566666666666444221 12455566
Q ss_pred Cceeeccccccccccc----ccCCCcccccccccccCCC
Q 048083 435 LQHLYLNWIHSAISWL----NFSSLNNLQTLWGLSMGDD 469 (692)
Q Consensus 435 L~~L~l~~~~~~~~~~----~i~~l~~L~~L~~~~~~~~ 469 (692)
|..|++..|....+-. .+.-+++|..|...++...
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 6666666665443211 1233455555555555444
No 188
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.021 Score=60.97 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|+.|+||||+|+.+++.
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 5678999999999999999864
No 189
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.18 E-value=0.013 Score=62.45 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIR 40 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 40 (692)
.-+.|+|..|+|||+||+++++. +...-..+++++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee
Confidence 34789999999999999999998 443322244444
No 190
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.02 Score=58.56 Aligned_cols=88 Identities=24% Similarity=0.248 Sum_probs=46.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc-chHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA-KFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL 81 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 81 (692)
.++|+|+|.+|+||||++.+++.. ....=..+.+++.+..- ...+-++...+.+..... ...+...+.+.+...-
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTYFK 316 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHHHH
Confidence 368999999999999999999887 33221234455543321 122223333333322211 2234444544443332
Q ss_pred cc-ccEEEEEeCCC
Q 048083 82 KE-ISYLIVVEDVE 94 (692)
Q Consensus 82 ~~-k~~LlVLDdv~ 94 (692)
.. +.=+|++|-.-
T Consensus 317 ~~~~~DvVLIDTaG 330 (436)
T PRK11889 317 EEARVDYILIDTAG 330 (436)
T ss_pred hccCCCEEEEeCcc
Confidence 21 23467777654
No 191
>PRK10867 signal recognition particle protein; Provisional
Probab=96.15 E-value=0.018 Score=60.57 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhccc-ccceEEecCc-cchHHHHHHHHHHhhhhhhhc-cCCChhHHHHHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFA-KRAWIRVRGD-AKFRDVLIDILQQIDDETLVE-ASAPEADLVSSLTT 79 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 79 (692)
-.+|.++|.+|+||||.|.+++.. .+.... .+..|+.+.. +...+.++...+......... ...++........+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~--l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKY--LKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH--HHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 368999999999999999999887 444422 3445554422 222233444455544322211 12344455544444
Q ss_pred HhccccE-EEEEeCCCC
Q 048083 80 LLKEISY-LIVVEDVET 95 (692)
Q Consensus 80 ~L~~k~~-LlVLDdv~~ 95 (692)
..+.+.+ +||+|-.-.
T Consensus 178 ~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 178 EAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHhcCCCEEEEeCCCC
Confidence 4444444 788887653
No 192
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.15 E-value=0.019 Score=63.41 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.++|..|+||||+|+.+++..
T Consensus 40 AyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999998873
No 193
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.14 E-value=0.015 Score=55.69 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|||.|.+|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999987
No 194
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.14 E-value=0.01 Score=58.86 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.-|.++|++|.||||+|+.+++.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 35689999999999999999886
No 195
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.13 E-value=0.0043 Score=58.10 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++++|+|.|++|+||||+|+.++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999876
No 196
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.13 E-value=0.004 Score=55.31 Aligned_cols=22 Identities=45% Similarity=0.739 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999876
No 197
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.13 E-value=0.0098 Score=54.96 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|+|+|++|+||||+|++++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999987
No 198
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.12 E-value=0.012 Score=60.86 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=48.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhc---cCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVE---ASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 80 (692)
.++.|.|.+|+|||||+.+++.. ....-..++|++.... ..++. .-++.+......- ...+.+++.+.+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~-- 155 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE-- 155 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH--
Confidence 57899999999999999999987 4444345777775443 22222 2233333211100 1122333333332
Q ss_pred hccccEEEEEeCCCC
Q 048083 81 LKEISYLIVVEDVET 95 (692)
Q Consensus 81 L~~k~~LlVLDdv~~ 95 (692)
+.+.-+||+|.+..
T Consensus 156 -~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 -ELKPDLVIIDSIQT 169 (372)
T ss_pred -hcCCcEEEEcchHH
Confidence 23567899998753
No 199
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.12 E-value=0.0044 Score=59.04 Aligned_cols=24 Identities=54% Similarity=0.807 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|+|+|.+|+||||||+.++..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 200
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.11 E-value=0.0097 Score=62.50 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.++|++|.|||++|++++++
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHH
Confidence 34789999999999999999997
No 201
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.017 Score=59.91 Aligned_cols=79 Identities=25% Similarity=0.309 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLK 82 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 82 (692)
+.-|.+.|.+|+|||+||.+++.. +.|+ ||.+-.. +++. +.. +......+.......-+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~----S~FP---FvKiiSp---e~mi-------G~s----EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALS----SDFP---FVKIISP---EDMI-------GLS----ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhh----cCCC---eEEEeCh---HHcc-------Ccc----HHHHHHHHHHHHHHhhc
Confidence 456788999999999999999987 6676 4433211 1110 000 01111122222233334
Q ss_pred cccEEEEEeCCCCccccccc
Q 048083 83 EISYLIVVEDVETPQVCNPN 102 (692)
Q Consensus 83 ~k~~LlVLDdv~~~~~~~~~ 102 (692)
..-..||+||+...-+|-.+
T Consensus 597 S~lsiivvDdiErLiD~vpI 616 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPI 616 (744)
T ss_pred CcceEEEEcchhhhhccccc
Confidence 45578899999876665544
No 202
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.10 E-value=0.012 Score=57.88 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|.++|++|+||||+|+++...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999987
No 203
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.09 E-value=0.024 Score=61.64 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|+.|+||||+|+.+++.
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999887
No 204
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.09 E-value=0.018 Score=59.14 Aligned_cols=47 Identities=23% Similarity=0.187 Sum_probs=33.1
Q ss_pred ccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHH
Q 048083 114 TLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLL 173 (692)
Q Consensus 114 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 173 (692)
.+++.+++.++..+.+....... . -..+....+++.++|.|.....+
T Consensus 194 ~i~l~pl~~~~~~~~L~~~~~~~----------~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 194 PISLKPLDDDELKKALSHLGSSQ----------G---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEecCCCHHHHHHHHHHhhccc----------C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 56999999999999998743111 1 11334678899999999755443
No 205
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.09 E-value=0.0027 Score=53.69 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcccchhhccc
Q 048083 6 IAILGERGSGKTTLARTVYDRVDVKRHFA 34 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~~~~~~~F~ 34 (692)
|.|+|.+|+||||+|++++.. +...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 679999999999999999998 666664
No 206
>PRK04040 adenylate kinase; Provisional
Probab=96.08 E-value=0.0045 Score=57.59 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|++|+||||+++.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999888
No 207
>PRK03839 putative kinase; Provisional
Probab=96.08 E-value=0.0044 Score=57.59 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999998
No 208
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.06 E-value=0.0052 Score=58.67 Aligned_cols=24 Identities=54% Similarity=0.805 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|+|.|.+|+||||||+.+...
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999987
No 209
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.024 Score=57.73 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc-chHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA-KFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL 81 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 81 (692)
-++|+|+|+.|+||||++..++.. ....=..+.+++.+..- ...+.++..++.+..... ...+..++...+...-
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQYMT 281 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHHHH
Confidence 468999999999999999999876 32222346677664332 223344444444443222 2334555544443322
Q ss_pred -ccccEEEEEeCCCC
Q 048083 82 -KEISYLIVVEDVET 95 (692)
Q Consensus 82 -~~k~~LlVLDdv~~ 95 (692)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13456788886643
No 210
>PRK06547 hypothetical protein; Provisional
Probab=96.01 E-value=0.0061 Score=55.76 Aligned_cols=25 Identities=44% Similarity=0.500 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...+|+|.|.+|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999886
No 211
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.97 E-value=0.042 Score=53.93 Aligned_cols=90 Identities=24% Similarity=0.316 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhc---cc-ccceEEecCccchHHHHHHHHHHhhhhhh---h----ccCCChhH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRH---FA-KRAWIRVRGDAKFRDVLIDILQQIDDETL---V----EASAPEAD 72 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~---F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~----~~~~~~~~ 72 (692)
.+.=|+|.+|+|||+||.+++-...+... -+ .++|++-...++.+.+. +|++....... + ....+.++
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHH
Confidence 47789999999999999988765333222 22 37899988888776654 44554332111 0 02233344
Q ss_pred HHHHHH---HHh-ccccEEEEEeCCC
Q 048083 73 LVSSLT---TLL-KEISYLIVVEDVE 94 (692)
Q Consensus 73 ~~~~l~---~~L-~~k~~LlVLDdv~ 94 (692)
....+. ..+ ..+=-|||+|.+-
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHhhccccceEEEEecchH
Confidence 433333 333 2344599999764
No 212
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.97 E-value=0.011 Score=52.82 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999887
No 213
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.96 E-value=0.015 Score=60.86 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.++|++|.|||++|+++++.
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998
No 214
>PRK06696 uridine kinase; Validated
Probab=95.96 E-value=0.0061 Score=58.78 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|+|.|.+|+||||+|+++...
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999987
No 215
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.96 E-value=0.0044 Score=51.82 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcccchhhcc
Q 048083 6 IAILGERGSGKTTLARTVYDRVDVKRHF 33 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~~~~~~~F 33 (692)
|-|+|.+|+|||++|+.++.+ +.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~--l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD--LLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH--HHHHh
Confidence 568999999999999999988 55444
No 216
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.019 Score=50.22 Aligned_cols=43 Identities=28% Similarity=0.455 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhh
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDD 60 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 60 (692)
+|.|-|.+|.||||+|+.++++.-.+ ++ +.-.+++.+++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCC
Confidence 68999999999999999999984322 11 223556666666654
No 217
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.025 Score=61.74 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|..|+||||+|+.++..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999877
No 218
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.011 Score=54.27 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999984
No 219
>PRK00625 shikimate kinase; Provisional
Probab=95.92 E-value=0.0055 Score=56.04 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|.|+||+|+||||+|+.+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999887
No 220
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.91 E-value=0.027 Score=59.48 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc-cchHHHHHHHHHHhhhhhhhc-cCCChhHHHHHHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD-AKFRDVLIDILQQIDDETLVE-ASAPEADLVSSLTTL 80 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~ 80 (692)
-.+|.++|.+|+||||.|.+++.. .+..-..+..|+.+.. ....+.++.+...+....... ...+.........+.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 358999999999999999999987 4433123444544322 223344555555554322210 112223333333333
Q ss_pred hccccEEEEEeCCCC
Q 048083 81 LKEISYLIVVEDVET 95 (692)
Q Consensus 81 L~~k~~LlVLDdv~~ 95 (692)
.... -+||+|..-.
T Consensus 173 ~~~~-DvVIIDTAGr 186 (437)
T PRK00771 173 FKKA-DVIIVDTAGR 186 (437)
T ss_pred hhcC-CEEEEECCCc
Confidence 4444 5789998743
No 221
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.91 E-value=0.014 Score=60.41 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|.+|+||||+|.+++..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 222
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.87 E-value=0.023 Score=59.72 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhccc-ccceEEecCc-cchHHHHHHHHHHhhhhhhhc-cCCChhHHHHHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFA-KRAWIRVRGD-AKFRDVLIDILQQIDDETLVE-ASAPEADLVSSLTT 79 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 79 (692)
-.+|.++|.+|+||||.|..++.. ...+.. .+..|+.+.. +...+.+.............. ...++........+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~--l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYY--LKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH--HHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 358999999999999999999887 432222 2444554422 122333334444443322210 12234444444444
Q ss_pred HhccccE-EEEEeCCC
Q 048083 80 LLKEISY-LIVVEDVE 94 (692)
Q Consensus 80 ~L~~k~~-LlVLDdv~ 94 (692)
....+.+ +||+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4444445 88888765
No 223
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.86 E-value=0.022 Score=49.41 Aligned_cols=106 Identities=9% Similarity=0.164 Sum_probs=48.2
Q ss_pred CCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCcc
Q 048083 321 PSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFID 400 (692)
Q Consensus 321 ~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~ 400 (692)
+...|.++++|+.+.+.... ..+....| ..+++|+.+.+..+ +..++..+|..+..|+.+.+.. .+.
T Consensus 4 ~~~~F~~~~~l~~i~~~~~~---------~~I~~~~F--~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPNTI---------KKIGENAF--SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp -TTTTTT-TT--EEEETST-----------EE-TTTT--TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred CHHHHhCCCCCCEEEECCCe---------eEeChhhc--cccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 34445566677766654321 12345556 66666777777663 5555555566666677777754 444
Q ss_pred ccCc-cccCCCCCeEEecCCccceecC-hhhhccccCceeecc
Q 048083 401 SLPN-SVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQHLYLN 441 (692)
Q Consensus 401 ~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~ 441 (692)
.++. .+..+.+|+.+++..+ +..++ ..+.++ +|+.+.+.
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 4442 3445666776666543 44443 234444 55555554
No 224
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.85 E-value=0.013 Score=55.06 Aligned_cols=93 Identities=26% Similarity=0.357 Sum_probs=47.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc--------cccceEEecCcc-chHHHHHHHHHHhhhhhhhc---------
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF--------AKRAWIRVRGDA-KFRDVLIDILQQIDDETLVE--------- 65 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F--------~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~--------- 65 (692)
.++.|.|.+|+||||++.+++........| ..++|++..... ....-+..+...........
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 478899999999999999998874222222 246777766553 22222222222211000000
Q ss_pred --------cCCChhHHHHHHHHHhcc--ccEEEEEeCCCCc
Q 048083 66 --------ASAPEADLVSSLTTLLKE--ISYLIVVEDVETP 96 (692)
Q Consensus 66 --------~~~~~~~~~~~l~~~L~~--k~~LlVLDdv~~~ 96 (692)
.........+.+.+.++. +.-+||+|++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~ 153 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSL 153 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHH
Confidence 001123445666676655 4679999987653
No 225
>PRK07667 uridine kinase; Provisional
Probab=95.84 E-value=0.0078 Score=56.49 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|||.|.+|+||||+|+.+...
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 226
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.028 Score=61.86 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|..|+||||+|+.+++.
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~ 61 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKS 61 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999665
No 227
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.04 Score=54.14 Aligned_cols=90 Identities=24% Similarity=0.231 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHH---HHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVS---SLTT 79 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~---~l~~ 79 (692)
-+++=|+|+.|.||||+|.+++-. ....-..++|++.-..+++..+.. +......+..-....+.++... .+.+
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 368889999999999999999887 433444789999888777665433 2333111111002333333333 2333
Q ss_pred HhccccEEEEEeCCCC
Q 048083 80 LLKEISYLIVVEDVET 95 (692)
Q Consensus 80 ~L~~k~~LlVLDdv~~ 95 (692)
....+--|||+|-|-.
T Consensus 137 ~~~~~i~LvVVDSvaa 152 (279)
T COG0468 137 SGAEKIDLLVVDSVAA 152 (279)
T ss_pred hccCCCCEEEEecCcc
Confidence 3333356899987653
No 228
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.80 E-value=0.012 Score=59.30 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLI 52 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 52 (692)
.++|.+.|.||+||||+|.+.+-. .......++-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhc
Confidence 478999999999999999998777 444445566677766666555443
No 229
>PRK14974 cell division protein FtsY; Provisional
Probab=95.80 E-value=0.032 Score=56.71 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=46.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhc-ccccceEEecC-ccchHHHHHHHHHHhhhhhhhc-cCCChhHH-HHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRH-FAKRAWIRVRG-DAKFRDVLIDILQQIDDETLVE-ASAPEADL-VSSLT 78 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~-~~~l~ 78 (692)
..+|+++|++|+||||.+.+++.. .+.. + .++.+.... .....+.++.....+....... ...+...+ .+.+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYY--LKKNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH--HHHcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 468999999999999998888876 3322 3 233444321 1122233444555554332211 11222222 22233
Q ss_pred HHhccccEEEEEeCCCC
Q 048083 79 TLLKEISYLIVVEDVET 95 (692)
Q Consensus 79 ~~L~~k~~LlVLDdv~~ 95 (692)
..-..+.=+|++|-+-.
T Consensus 217 ~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 217 HAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHhCCCCEEEEECCCc
Confidence 22222333888998754
No 230
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.78 E-value=0.016 Score=54.85 Aligned_cols=88 Identities=15% Similarity=0.272 Sum_probs=49.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc-chHHHHHHHHHHhhhhh-h---hccCCChhH------
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA-KFRDVLIDILQQIDDET-L---VEASAPEAD------ 72 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-~---~~~~~~~~~------ 72 (692)
+.++|.|.+|+|||+|+..+.+.. . -+.++++-+.+.. ...++.+.+...-..+. . .........
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~--~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ--D--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC--T--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc--c--ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 568999999999999999999983 2 2334677666543 34444444432211100 0 001111111
Q ss_pred HHHHHHHHh--ccccEEEEEeCCCC
Q 048083 73 LVSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 73 ~~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
..-.+.+++ +++.+|+|+||+-.
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 111223333 58999999999854
No 231
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.78 E-value=0.006 Score=56.36 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|+|.|.+|+||||+|+++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 232
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.0073 Score=53.53 Aligned_cols=20 Identities=45% Similarity=0.694 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 048083 5 IIAILGERGSGKTTLARTVY 24 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~ 24 (692)
.|+|+|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 233
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.015 Score=49.92 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=40.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKEI 84 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 84 (692)
-|.|+|-+|+||||+|.+++... . .-|+.++.-.....+....=.+... ...+.+.+.+.+...+...
T Consensus 9 NILvtGTPG~GKstl~~~lae~~----~---~~~i~isd~vkEn~l~~gyDE~y~c-----~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT----G---LEYIEISDLVKENNLYEGYDEEYKC-----HILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh----C---CceEehhhHHhhhcchhcccccccC-----ccccHHHHHHHHHHHHhcC
Confidence 47899999999999999999652 2 3366655332211221111111111 2345566677777776655
Q ss_pred cEE
Q 048083 85 SYL 87 (692)
Q Consensus 85 ~~L 87 (692)
.+.
T Consensus 77 g~I 79 (176)
T KOG3347|consen 77 GNI 79 (176)
T ss_pred CcE
Confidence 443
No 234
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.0092 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|+|+|.+|+||||+.+.+-..
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHHH
Confidence 3589999999999999999888776
No 235
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.026 Score=60.08 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc--cccceEEec
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF--AKRAWIRVR 42 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F--~~~~wv~~~ 42 (692)
++|+|+|.+|+||||++.+++.. ..... ..+..++.+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~--la~~~~gkkVaLIdtD 389 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQR--FAAQHAPRDVALVTTD 389 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCceEEEecc
Confidence 68999999999999999999876 32222 335555543
No 236
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.04 Score=59.75 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.++|+.|+||||+|+.+++..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999998863
No 237
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.0076 Score=55.43 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|+|-||=|+||||||+.++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999998
No 238
>PRK06217 hypothetical protein; Validated
Probab=95.74 E-value=0.008 Score=55.96 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
..|.|.|.+|+||||+|+++....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999884
No 239
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.74 E-value=0.0064 Score=57.49 Aligned_cols=22 Identities=50% Similarity=0.782 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|||.|.+|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 240
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.73 E-value=0.036 Score=55.62 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhc---cCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVE---ASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 80 (692)
++|-|+|..|+||||||..+... ....-..++|++....++..- +..++.....- .+...++....+...
T Consensus 54 ~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~l 126 (322)
T PF00154_consen 54 RIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQL 126 (322)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHHH
T ss_pred ceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHHH
Confidence 68999999999999999999987 433334477998876665432 33443322110 344556666666666
Q ss_pred hccc-cEEEEEeCCCC
Q 048083 81 LKEI-SYLIVVEDVET 95 (692)
Q Consensus 81 L~~k-~~LlVLDdv~~ 95 (692)
++.. --++|+|-|..
T Consensus 127 irsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 127 IRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHTTSESEEEEE-CTT
T ss_pred hhcccccEEEEecCcc
Confidence 6543 45889998764
No 241
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.71 E-value=0.039 Score=57.59 Aligned_cols=88 Identities=11% Similarity=0.221 Sum_probs=49.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc-chHHHHHHHHHHhhhhh-h---hccCCC------hhH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA-KFRDVLIDILQQIDDET-L---VEASAP------EAD 72 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-~---~~~~~~------~~~ 72 (692)
+.++|.|..|+|||||++.+++.. ..+.++++-+.+.. ...+....++..-.... . .....+ ...
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 578999999999999999998762 22556666555543 22334433322210000 0 000111 111
Q ss_pred HHHHHHHHh--ccccEEEEEeCCCC
Q 048083 73 LVSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 73 ~~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
..-.+.+++ +++++|+++||+-.
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChHH
Confidence 222244444 57899999999866
No 242
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.71 E-value=0.0096 Score=56.13 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=47.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
.+|.|+|..|.||||++.++... +.......++.--.. .+..... ...+..+.. .........+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e~~---~E~~~~~-~~~~i~q~~--vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIEDP---IEFVHES-KRSLINQRE--VGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEcCC---ccccccC-ccceeeecc--cCCCccCHHHHHHHHhcC
Confidence 37899999999999999998877 443334444432111 0000000 000000000 111223455567777777
Q ss_pred ccEEEEEeCCCCcc
Q 048083 84 ISYLIVVEDVETPQ 97 (692)
Q Consensus 84 k~~LlVLDdv~~~~ 97 (692)
..=.+++|++.+.+
T Consensus 74 ~pd~ii~gEird~e 87 (198)
T cd01131 74 DPDVILVGEMRDLE 87 (198)
T ss_pred CcCEEEEcCCCCHH
Confidence 77789999876543
No 243
>CHL00181 cbbX CbbX; Provisional
Probab=95.71 E-value=0.034 Score=55.56 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|.++|.+|.||||+|+.++..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3788999999999999999886
No 244
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.073 Score=55.10 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=31.6
Q ss_pred ccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHh
Q 048083 114 TLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLG 174 (692)
Q Consensus 114 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g 174 (692)
.+.+.+++.++..+++....... . .+....+++.++|.|.....+.
T Consensus 194 ~i~l~~l~~~~i~~~L~~~~~~~------------~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 194 KLRLRPLAPEDVIDALAAAGPDL------------P---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCCCCHHHHHHHHHHhcccC------------C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 35999999999999998764111 1 1112678999999997554443
No 245
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.011 Score=63.55 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=49.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
++++.+|++|||||.+|+.+++- ...+|. -+++..-.+..++-..-... ...-+..+++.+++.=.
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~A--LnRkFf---RfSvGG~tDvAeIkGHRRTY--------VGAMPGkiIq~LK~v~t- 504 (906)
T KOG2004|consen 439 KILCFVGPPGVGKTSIAKSIARA--LNRKFF---RFSVGGMTDVAEIKGHRRTY--------VGAMPGKIIQCLKKVKT- 504 (906)
T ss_pred cEEEEeCCCCCCcccHHHHHHHH--hCCceE---EEeccccccHHhhcccceee--------eccCChHHHHHHHhhCC-
Confidence 68999999999999999999988 545552 23455444544433221111 23334556666665433
Q ss_pred ccEEEEEeCCCCc
Q 048083 84 ISYLIVVEDVETP 96 (692)
Q Consensus 84 k~~LlVLDdv~~~ 96 (692)
..=|+.||.||..
T Consensus 505 ~NPliLiDEvDKl 517 (906)
T KOG2004|consen 505 ENPLILIDEVDKL 517 (906)
T ss_pred CCceEEeehhhhh
Confidence 3457778998864
No 246
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.026 Score=57.16 Aligned_cols=83 Identities=23% Similarity=0.291 Sum_probs=51.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhc---cCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVE---ASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 80 (692)
.+|.|-|-+|||||||..+++.+ +...- .+.+|+-.++.. ++ +--++.+......- ...+.++..+.+.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~--Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~-- 165 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQ--QI-KLRADRLGLPTNNLYLLAETNLEDIIAELE-- 165 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHH--HH-HHHHHHhCCCccceEEehhcCHHHHHHHHH--
Confidence 47899999999999999999999 65444 666776554432 22 22244554322210 2233334333333
Q ss_pred hccccEEEEEeCCCC
Q 048083 81 LKEISYLIVVEDVET 95 (692)
Q Consensus 81 L~~k~~LlVLDdv~~ 95 (692)
+.+.-++|+|-+..
T Consensus 166 -~~~p~lvVIDSIQT 179 (456)
T COG1066 166 -QEKPDLVVIDSIQT 179 (456)
T ss_pred -hcCCCEEEEeccce
Confidence 36788999998765
No 247
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.68 E-value=0.0086 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|++|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999886
No 248
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.68 E-value=0.023 Score=60.11 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=45.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccc-hHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAK-FRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLK 82 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 82 (692)
++|+++|++|+||||++.+++........-..+..|+.+..-. ..+.+....+.+..... ...+..+....+.+ +.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ-LR 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-hC
Confidence 5899999999999999999887632112223466676543211 11222232333322211 22333444444443 22
Q ss_pred cccEEEEEeCC
Q 048083 83 EISYLIVVEDV 93 (692)
Q Consensus 83 ~k~~LlVLDdv 93 (692)
..=+||+|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3457888865
No 249
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.66 E-value=0.0085 Score=55.34 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|.+.|++|+||||+|+++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999877
No 250
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.65 E-value=0.015 Score=53.08 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchh-hcccccceEEecC
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVK-RHFAKRAWIRVRG 43 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~F~~~~wv~~~~ 43 (692)
..++.+.|+.|+|||.+|+++++. +. +.....+-++.+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhc
Confidence 457889999999999999999998 44 3444445555443
No 251
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.65 E-value=0.026 Score=56.42 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.++|.+|.|||++|+.+++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999888776
No 252
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.033 Score=59.07 Aligned_cols=68 Identities=21% Similarity=0.401 Sum_probs=43.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcccc
Q 048083 6 IAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKEIS 85 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~ 85 (692)
|.+||++|.|||-||++++|+. . .-|+++... +++ ...-+ .++..+.+..++.=...+
T Consensus 548 vLL~GPPGCGKTLlAKAVANEa--g-----~NFisVKGP----ELl----NkYVG-------ESErAVR~vFqRAR~saP 605 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEA--G-----ANFISVKGP----ELL----NKYVG-------ESERAVRQVFQRARASAP 605 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhc--c-----CceEeecCH----HHH----HHHhh-------hHHHHHHHHHHHhhcCCC
Confidence 5789999999999999999993 2 335665443 222 11111 112233444444445679
Q ss_pred EEEEEeCCCC
Q 048083 86 YLIVVEDVET 95 (692)
Q Consensus 86 ~LlVLDdv~~ 95 (692)
+.|.+|.++.
T Consensus 606 CVIFFDEiDa 615 (802)
T KOG0733|consen 606 CVIFFDEIDA 615 (802)
T ss_pred eEEEecchhh
Confidence 9999999875
No 253
>PHA00729 NTP-binding motif containing protein
Probab=95.64 E-value=0.0094 Score=56.32 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...|.|+|.+|+||||||.++.++
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999987
No 254
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.64 E-value=0.075 Score=55.46 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|.+|+||||+|+.++..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999877
No 255
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.64 E-value=0.01 Score=58.45 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|.|+|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999999887
No 256
>PRK13949 shikimate kinase; Provisional
Probab=95.61 E-value=0.0094 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|+|++|+||||+|+.++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999988
No 257
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.039 Score=57.29 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=50.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhh-cc-cccceEEecCc-cchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKR-HF-AKRAWIRVRGD-AKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~F-~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 80 (692)
++|.++|..|+||||.+.+++....... .- ..+..++.+.. ....+.++...+.+..... ......+....+.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEITQS 252 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHHHh
Confidence 6899999999999999999987732221 11 23555665432 1222334454554443222 223334444444432
Q ss_pred hccccEEEEEeCCCC
Q 048083 81 LKEISYLIVVEDVET 95 (692)
Q Consensus 81 L~~k~~LlVLDdv~~ 95 (692)
.+.-+||+|-+..
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456888887754
No 258
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.041 Score=58.05 Aligned_cols=23 Identities=43% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.++|+.|+||||+|+.+++..
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998873
No 259
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.55 E-value=0.0094 Score=55.02 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|.|+|++|+||||+|++++..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999998
No 260
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.54 E-value=0.0066 Score=60.09 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
+=|.++|..|+|||++++.+.+..+- ..|- ..-+.++...+...+++.+...+..... . .-.--.+
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~-~~~~-~~~~~~s~~Tts~~~q~~ie~~l~k~~~--~----------~~gP~~~ 99 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDS-DKYL-VITINFSAQTTSNQLQKIIESKLEKRRG--R----------VYGPPGG 99 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTT-CCEE-EEEEES-TTHHHHHHHHCCCTTECECTT--E----------EEEEESS
T ss_pred CcEEEECCCCCchhHHHHhhhccCCc-cccc-eeEeeccCCCCHHHHHHHHhhcEEcCCC--C----------CCCCCCC
Confidence 34689999999999999998876221 1111 2234455443433433322222111000 0 0000136
Q ss_pred ccEEEEEeCCCCc
Q 048083 84 ISYLIVVEDVETP 96 (692)
Q Consensus 84 k~~LlVLDdv~~~ 96 (692)
|+.++.+||+.-+
T Consensus 100 k~lv~fiDDlN~p 112 (272)
T PF12775_consen 100 KKLVLFIDDLNMP 112 (272)
T ss_dssp SEEEEEEETTT-S
T ss_pred cEEEEEecccCCC
Confidence 8899999999753
No 261
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.49 E-value=0.0094 Score=53.44 Aligned_cols=22 Identities=41% Similarity=0.813 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999887
No 262
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.44 E-value=0.0094 Score=53.18 Aligned_cols=22 Identities=50% Similarity=0.711 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|.|.|.+|+||||+|+++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999987
No 263
>PRK13947 shikimate kinase; Provisional
Probab=95.43 E-value=0.011 Score=54.26 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.|+|++|+||||+|+.+++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999988
No 264
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.42 E-value=0.058 Score=55.07 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhc---c-cccceEEecCccchHHHHHHHHHHhh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRH---F-AKRAWIRVRGDAKFRDVLIDILQQID 59 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~---F-~~~~wv~~~~~~~~~~~~~~i~~~l~ 59 (692)
.++-|+|.+|+|||++|..++........ - ..++|++....++.+.+. ++++.+.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 57889999999999999988754222111 1 258899998888776654 4455543
No 265
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.41 E-value=0.036 Score=56.52 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc----cccceEEecCccchHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF----AKRAWIRVRGDAKFRDVL 51 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~ 51 (692)
+++-|+|.+|+||||+|.+++......... ..++||+....++.+.+.
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~ 147 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM 147 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH
Confidence 578899999999999999998763221111 258899988877766544
No 266
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.40 E-value=0.035 Score=56.37 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
+++.|++|.||||+|+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999877
No 267
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.40 E-value=0.034 Score=58.33 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=47.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhh---hccCCC------hhHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETL---VEASAP------EADLV 74 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~------~~~~~ 74 (692)
++++|+|..|+|||||++.+..... ...+++++.-....+..++....+........ .+.... .....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5789999999999999998887632 12234444322223444443333332211110 001111 11112
Q ss_pred HHHHHHh--ccccEEEEEeCCCC
Q 048083 75 SSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 75 ~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
-.+.+++ +++.+|+++||+-.
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHH
Confidence 2244444 47899999999865
No 268
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.40 E-value=0.03 Score=61.06 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
=|.++|++|.|||++|++++..
T Consensus 90 giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3788999999999999999987
No 269
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.39 E-value=0.038 Score=56.63 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.++.++|.+|+||||+|+++++.
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHH
Confidence 35667999999999999999987
No 270
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.39 E-value=0.011 Score=54.75 Aligned_cols=22 Identities=41% Similarity=0.755 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 271
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.39 E-value=0.013 Score=54.49 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|+.|+||||||+.+++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999986
No 272
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.38 E-value=0.072 Score=51.87 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLID 53 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 53 (692)
+++.|.|.+|+|||++|.++... ....=+.++||+.... ..++.+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeCC--HHHHHHH
Confidence 58899999999999999998766 2223356788887653 3444444
No 273
>PRK08149 ATP synthase SpaL; Validated
Probab=95.37 E-value=0.044 Score=57.32 Aligned_cols=88 Identities=10% Similarity=0.165 Sum_probs=48.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc-cchHHHHHHHHHHhhhhhh----hccCC------ChhH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD-AKFRDVLIDILQQIDDETL----VEASA------PEAD 72 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~------~~~~ 72 (692)
+.++|.|..|+|||||+..+++... -+.++...+... ....++............. ..... ....
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 5789999999999999999998632 233333333222 2344444444432211100 00011 1112
Q ss_pred HHHHHHHHh--ccccEEEEEeCCCC
Q 048083 73 LVSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 73 ~~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
....+.+++ +++.+||++||+-.
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccchHH
Confidence 233344444 58899999999966
No 274
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.041 Score=52.00 Aligned_cols=32 Identities=41% Similarity=0.616 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecC
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRG 43 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 43 (692)
=|.++|++|.|||-.|++++|+ . ..||+.+-.
T Consensus 213 gvllygppgtgktl~aravanr--t-----dacfirvig 244 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANR--T-----DACFIRVIG 244 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcc--c-----CceEEeehh
Confidence 3678999999999999999999 3 345666543
No 275
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.36 E-value=0.0081 Score=33.68 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=7.5
Q ss_pred cceeeccCCCccccCcc
Q 048083 389 LSYLGLRSTFIDSLPNS 405 (692)
Q Consensus 389 L~~L~l~~~~i~~lp~~ 405 (692)
|++|++++|.+..+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 276
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.36 E-value=0.012 Score=51.96 Aligned_cols=40 Identities=30% Similarity=0.509 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcccchhhcccccc-eEEecCccchHHHH
Q 048083 6 IAILGERGSGKTTLARTVYDRVDVKRHFAKRA-WIRVRGDAKFRDVL 51 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~-wv~~~~~~~~~~~~ 51 (692)
|.|+|.+|+|||+||+.+++. . +..+ -+.++...+..+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~----~~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--L----GRPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--H----TCEEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH--h----hcceEEEEeccccccccce
Confidence 679999999999999999988 3 3322 34666666655544
No 277
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.35 E-value=0.019 Score=53.55 Aligned_cols=41 Identities=32% Similarity=0.397 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAK 46 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~ 46 (692)
.|+|+|-||+||||+|..++...--++.|+ +.=|+.+..++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCC
Confidence 589999999999999998655521112132 33345555544
No 278
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.35 E-value=0.082 Score=52.77 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-cccceEEecCccchHHHHHHHHHHh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-AKRAWIRVRGDAKFRDVLIDILQQI 58 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l 58 (692)
.++.|.|.+|+||||+|.+++.. ..... ..++|++.... ..++...+...+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 47889999999999999999887 43332 34778876553 345555554443
No 279
>CHL00176 ftsH cell division protein; Validated
Probab=95.34 E-value=0.035 Score=61.71 Aligned_cols=69 Identities=13% Similarity=0.357 Sum_probs=41.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKEI 84 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 84 (692)
-|.++|++|.|||++|++++.+. +.-|+.++.. +.. ....+ .........+....+..
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~-------~~p~i~is~s----~f~----~~~~g-------~~~~~vr~lF~~A~~~~ 275 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEA-------EVPFFSISGS----EFV----EMFVG-------VGAARVRDLFKKAKENS 275 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-------CCCeeeccHH----HHH----HHhhh-------hhHHHHHHHHHHHhcCC
Confidence 47899999999999999999873 1224443321 110 00000 01112333344455667
Q ss_pred cEEEEEeCCCC
Q 048083 85 SYLIVVEDVET 95 (692)
Q Consensus 85 ~~LlVLDdv~~ 95 (692)
+++|++||++.
T Consensus 276 P~ILfIDEID~ 286 (638)
T CHL00176 276 PCIVFIDEIDA 286 (638)
T ss_pred CcEEEEecchh
Confidence 89999999975
No 280
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.33 E-value=0.07 Score=55.96 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc-chHHHHHHHHHHhhhh-hh---hccCCC------hhH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA-KFRDVLIDILQQIDDE-TL---VEASAP------EAD 72 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-~~---~~~~~~------~~~ 72 (692)
+.++|.|..|+|||||++.+++..+ -+.++++-+.+.. ...+.....+..-... .. .....+ ...
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999999998732 2455555554443 2223333222211100 00 001111 111
Q ss_pred HHHHHHHHh--ccccEEEEEeCCCC
Q 048083 73 LVSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 73 ~~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
..-.+.+++ +++.+|+++||+-.
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 222344544 57899999999965
No 281
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.33 E-value=0.017 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|++|+||||||+.+...
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999987
No 282
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.32 E-value=0.067 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|+++|++|+||||++..++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 469999999999999999999987
No 283
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.085 Score=55.27 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+.++|++|+||||+|+.+++.
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999887
No 284
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.31 E-value=0.067 Score=54.27 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcc----cccceEEecCccchHHHHHHHHHHh
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHF----AKRAWIRVRGDAKFRDVLIDILQQI 58 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l 58 (692)
-+++.|+|.+|+||||||..++......... ..++|++....++.+.+ ..+++.+
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 3688999999999999999987642121111 24689988776666653 3344443
No 285
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.30 E-value=0.013 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|+|+.|+|||||++.+.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999987
No 286
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.28 E-value=0.086 Score=57.78 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=32.7
Q ss_pred ccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCC-chHHHHHhhh
Q 048083 114 TLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGL-PLHISLLGGL 176 (692)
Q Consensus 114 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~g~~ 176 (692)
.+++.+++.++..+.+...+... +. .-..+.+..|++.++|- -.|+..+...
T Consensus 172 ~i~F~pLs~~eL~~~L~~il~~e---gi--------~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 172 HFTFTRLSEAGLEAHLTKVLGRE---GV--------DYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred ccccCCCCHHHHHHHHHHHHHHc---CC--------CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45888888888888887755332 11 11234567778888884 4666666544
No 287
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.28 E-value=0.036 Score=55.09 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|||.|..|+||||+|+.+..-
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999887655
No 288
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.28 E-value=0.08 Score=50.70 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|.|.|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999876
No 289
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.28 E-value=0.018 Score=63.50 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++++|+|++|+||||+++.++..
T Consensus 111 ~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999987
No 290
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.27 E-value=0.015 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|.|.|.+|+||||+|+.++.+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999998
No 291
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.27 E-value=0.015 Score=51.15 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchh-hcccccceEEecC
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVK-RHFAKRAWIRVRG 43 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~F~~~~wv~~~~ 43 (692)
++|+|+|..|+|||||++.+.+. .. ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~--l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE--LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhHcCCceEEEEEccC
Confidence 48999999999999999999999 44 4444444555443
No 292
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.26 E-value=0.13 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.++|+.|+||||+|+.+++..
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998773
No 293
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.26 E-value=0.045 Score=53.25 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLID 53 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 53 (692)
.++.|+|.+|+|||++|.++... ....=..++|++..+. ..++.+.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHH
Confidence 57899999999999999999765 2222245778887654 3344443
No 294
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.25 E-value=0.066 Score=54.14 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=38.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchh---hcc-cccceEEecCccchHHHHHHHHHHhh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVK---RHF-AKRAWIRVRGDAKFRDVLIDILQQID 59 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~ 59 (692)
+++-|+|.+|+|||+||.+++-..... +.- ..++|++....++.+.+.+ +++.+.
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 578899999999999999887542221 111 3578999888877776653 455543
No 295
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.23 E-value=0.07 Score=51.28 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|.|++|+||||+|+.++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999887
No 296
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.18 E-value=0.018 Score=52.35 Aligned_cols=21 Identities=48% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|+|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999988
No 297
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.18 E-value=0.075 Score=54.21 Aligned_cols=55 Identities=27% Similarity=0.300 Sum_probs=38.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchh---hcc-cccceEEecCccchHHHHHHHHHHhh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVK---RHF-AKRAWIRVRGDAKFRDVLIDILQQID 59 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~ 59 (692)
.++-|+|.+|+|||+|+.+++-..... +.- ..++|++....|+.+.+.+ +++.+.
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 577899999999999999987542221 112 3578999988888777654 455444
No 298
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.18 E-value=0.23 Score=43.26 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHccc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.|.++|..|.|||||++++-..+
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCCC
Confidence 3678999999999999999998875
No 299
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.16 E-value=0.02 Score=56.66 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA 45 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~ 45 (692)
-+++.|+|.+|+|||++|.++... .......++||+..+.+
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEESP 63 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCCH
Confidence 368999999999999999999998 66777889999988754
No 300
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.16 E-value=0.094 Score=50.82 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD 44 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 44 (692)
.++.|.|.+|.||||+|.+++.+ ....-..++|++....
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES 59 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 57899999999999999998765 2223345778876443
No 301
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.15 E-value=0.02 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+++|+|..|+|||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 468999999999999999999987
No 302
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.13 E-value=0.047 Score=58.27 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhc---cCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVE---ASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 80 (692)
.++.|.|.+|+|||||+.+++.. ....=..++|++..... .++... ++.+......- ...+.+++.+.+.
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~-- 153 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEESA--SQIKLR-AERLGLPSDNLYLLAETNLEAILATIE-- 153 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccccH--HHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH--
Confidence 57899999999999999999887 43222346777765432 233222 33333211100 1123333333332
Q ss_pred hccccEEEEEeCCCC
Q 048083 81 LKEISYLIVVEDVET 95 (692)
Q Consensus 81 L~~k~~LlVLDdv~~ 95 (692)
+.+.-+||+|.+..
T Consensus 154 -~~~~~lVVIDSIq~ 167 (446)
T PRK11823 154 -EEKPDLVVIDSIQT 167 (446)
T ss_pred -hhCCCEEEEechhh
Confidence 23556899997653
No 303
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.12 E-value=0.062 Score=52.03 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|||.|.+|.|||||++.+...
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999987
No 304
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.12 E-value=0.018 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.|.|+|+.|.||||+|+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999999999999987
No 305
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.11 E-value=0.078 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+++|..|+||||+++.++..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988775
No 306
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.11 E-value=0.058 Score=52.65 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=53.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccch--hhcccccceEEecCcc-chHHHHHHHHHHhhh-hhh---hccCCC------h
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDV--KRHFAKRAWIRVRGDA-KFRDVLIDILQQIDD-ETL---VEASAP------E 70 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~--~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-~~~---~~~~~~------~ 70 (692)
+.++|.|-.|+|||+|+..+.++..+ +++-+.++++-+.+.. ...++...+...=.. ... ...... .
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 57899999999999999999887321 1223567777776553 334455444332110 000 000011 1
Q ss_pred hHHHHHHHHHhc---cccEEEEEeCCCCc
Q 048083 71 ADLVSSLTTLLK---EISYLIVVEDVETP 96 (692)
Q Consensus 71 ~~~~~~l~~~L~---~k~~LlVLDdv~~~ 96 (692)
....-.+.++++ ++++|+++||+-..
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 112233555553 68999999998763
No 307
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.1 Score=57.72 Aligned_cols=23 Identities=43% Similarity=0.420 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.++|+.|+||||+|+.+++..
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998773
No 308
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.08 E-value=0.038 Score=54.50 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=25.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccchhhcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDVKRHF 33 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F 33 (692)
++.+|.|.|.+|+|||||+.++.+. .+...
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~ 132 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR--LKDSV 132 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--hccCC
Confidence 4679999999999999999999998 54443
No 309
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.08 E-value=0.018 Score=53.73 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999887
No 310
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.08 E-value=0.078 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 048083 4 QIIAILGERGSGKTTLARTVYD 25 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~ 25 (692)
.+++|+|+.|.|||||.+.+.-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999977
No 311
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.07 E-value=0.01 Score=33.25 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=13.4
Q ss_pred CCeEEecCCccceecChhhhc
Q 048083 411 YLETLDVKHTKLRYLPDSIWK 431 (692)
Q Consensus 411 ~L~~L~L~~~~l~~lp~~~~~ 431 (692)
+|++|+|++|+++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777776666665543
No 312
>PRK14530 adenylate kinase; Provisional
Probab=95.07 E-value=0.016 Score=55.51 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|+|++|+||||+|+.++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999887
No 313
>PRK04328 hypothetical protein; Provisional
Probab=95.06 E-value=0.084 Score=51.74 Aligned_cols=40 Identities=10% Similarity=0.224 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA 45 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~ 45 (692)
.++.|.|.+|.|||+||.++..+ ....=..++|++..+.+
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEHP 63 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCCH
Confidence 57899999999999999998776 32333557888876643
No 314
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.06 E-value=0.021 Score=53.13 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=29.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEE
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIR 40 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 40 (692)
-|+|.|+|+.|+|||||++++..+ ....|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeec
Confidence 478999999999999999999998 556775444443
No 315
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.05 E-value=0.017 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999987
No 316
>PRK14532 adenylate kinase; Provisional
Probab=95.05 E-value=0.12 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|.|++|+||||+|+.++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999876
No 317
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.05 E-value=0.059 Score=57.62 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhc---cCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVE---ASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 80 (692)
.++.|.|.+|+|||||+.+++.+ ....=..++|++..+. ..++.. -++.+......- ...+.+++.+.+.
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~-- 167 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE-- 167 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH--
Confidence 58899999999999999999877 4332234677775543 223222 122332211100 1223333333332
Q ss_pred hccccEEEEEeCCCC
Q 048083 81 LKEISYLIVVEDVET 95 (692)
Q Consensus 81 L~~k~~LlVLDdv~~ 95 (692)
+.+.-++|+|.+..
T Consensus 168 -~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 -EENPQACVIDSIQT 181 (454)
T ss_pred -hcCCcEEEEecchh
Confidence 23556899997764
No 318
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.05 E-value=0.021 Score=53.72 Aligned_cols=23 Identities=48% Similarity=0.726 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.++||+|..|.||||||+.++--
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 47899999999999999999775
No 319
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.04 E-value=0.016 Score=52.09 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|+|++|.||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999887
No 320
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.14 Score=55.22 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...++|+.|+||||+|+.++..
T Consensus 40 ayLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999876
No 321
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.02 E-value=0.022 Score=46.87 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVY 24 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~ 24 (692)
..++|.|..|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 578999999999999999986
No 322
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.99 E-value=0.035 Score=59.20 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-cccceE-EecCccchHHHHHHHHHHhhhhhh----hc---cCCChhHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-AKRAWI-RVRGDAKFRDVLIDILQQIDDETL----VE---ASAPEADLV 74 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv-~~~~~~~~~~~~~~i~~~l~~~~~----~~---~~~~~~~~~ 74 (692)
+.++|+|.+|+|||||++.+++. +.... +..++| -+.+... ++ ..+.+.+..... .+ .........
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~--i~~n~~~~~~ivvLIgERpe--EV-tdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANA--ITTNNPECHLMVVLVDERPE--EV-TDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHH--HhhcCCCeEEEEEEEeCchh--hH-HHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 46799999999999999999997 53333 333343 3444321 21 223333322111 00 001112223
Q ss_pred HHHHHHh--ccccEEEEEeCCCC
Q 048083 75 SSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 75 ~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
-.+.+++ +++.+||++|++-.
T Consensus 492 i~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCchH
Confidence 3344555 57899999999865
No 323
>PRK13948 shikimate kinase; Provisional
Probab=94.98 E-value=0.019 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.++||.|+||||+++.+...
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999987
No 324
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.11 Score=57.07 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|+.|+||||+|+.+++.
T Consensus 37 a~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999877
No 325
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.94 E-value=0.11 Score=57.36 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|+.|+||||+|+.+++.
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999887
No 326
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.93 E-value=0.016 Score=52.84 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|+|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999988
No 327
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.91 E-value=0.021 Score=57.92 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHccc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.++++++|++|.||||||+++++..
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999884
No 328
>PRK13975 thymidylate kinase; Provisional
Probab=94.91 E-value=0.021 Score=53.92 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|+.|+||||+|+.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999998
No 329
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.90 E-value=0.022 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|||+|+.|+||||.|+.+.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~ 25 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAEL 25 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHc
Confidence 468999999999999999887663
No 330
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.90 E-value=0.077 Score=57.89 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccc--cceEE
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAK--RAWIR 40 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~--~~wv~ 40 (692)
-+.|+|..|.|||.|+.++++. ....+.+ +++++
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit 351 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS 351 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee
Confidence 4789999999999999999998 5544432 34444
No 331
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.89 E-value=0.17 Score=48.75 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=33.2
Q ss_pred CCccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCch
Q 048083 112 GPTLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPL 168 (692)
Q Consensus 112 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 168 (692)
+...+++.-+++|-.+...+.|..- ..+-.++-+.+|++...|-|-
T Consensus 173 Gi~~rlefY~~~eL~~Iv~r~a~~l-----------~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 173 GIIQRLEFYTVEELEEIVKRSAKIL-----------GIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred CCeeeeecCCHHHHHHHHHHHHHHh-----------CCCCChHHHHHHHHhccCCcH
Confidence 3445888889999999888876222 122334568899999999994
No 332
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.87 E-value=0.03 Score=56.46 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDV 50 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 50 (692)
.|+|-+.|-||+||||+|.+++-. ....=..++-++.+...+..++
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~--~A~~G~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALA--LARRGKRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHH--HHHTTS-EEEEESSTTTHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHH--HhhCCCCeeEeecCCCccHHHH
Confidence 378999999999999999888776 3222122444555544443333
No 333
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.87 E-value=0.079 Score=56.44 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc-cchHHHHHHHHHHhh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD-AKFRDVLIDILQQID 59 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~ 59 (692)
+|++++|..|+||||.+.+++.....+..-..+..+..+.. ....+-++...+.++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG 313 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG 313 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC
Confidence 68999999999999999999987322222223455554331 222333444444443
No 334
>PRK13946 shikimate kinase; Provisional
Probab=94.85 E-value=0.021 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.++|++|+||||+|+.++++
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999998
No 335
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.084 Score=59.15 Aligned_cols=87 Identities=21% Similarity=0.197 Sum_probs=50.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc-cchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD-AKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLK 82 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 82 (692)
+||+++|+.|+||||.+.+++...........+..+..+.. ....+.++...+.+..... ...+..++.+.+. .++
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-ALG 262 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-Hhc
Confidence 68999999999999999999987321211224555554321 1233445554555543332 2334555544444 344
Q ss_pred cccEEEEEeCCC
Q 048083 83 EISYLIVVEDVE 94 (692)
Q Consensus 83 ~k~~LlVLDdv~ 94 (692)
++ =+|++|=.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 44 377788765
No 336
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.83 E-value=0.096 Score=46.44 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+++|.|..|.|||||++.+....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 578999999999999999998873
No 337
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.83 E-value=0.031 Score=55.15 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
.++|+|+|.+|+|||||+.++... .++.. .++-+..
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~--L~~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDR--LSGRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhCC-CEEEEEE
Confidence 368999999999999999999998 55554 4555544
No 338
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.81 E-value=0.077 Score=51.32 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhc-ccccceEEecCccchHHHHHHHHHHhhhhhh--------------hcc--
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRH-FAKRAWIRVRGDAKFRDVLIDILQQIDDETL--------------VEA-- 66 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------------~~~-- 66 (692)
.++.|.|.+|+|||++|.+++.. -... =+.++||+....+ +++.+.+. .++-... ...
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred cEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 57899999999999999998776 3334 2457788876543 34444322 3321110 000
Q ss_pred --CCChhHHHHHHHHHhcc-ccEEEEEeCCC
Q 048083 67 --SAPEADLVSSLTTLLKE-ISYLIVVEDVE 94 (692)
Q Consensus 67 --~~~~~~~~~~l~~~L~~-k~~LlVLDdv~ 94 (692)
..+.+.....+.+.++. +...+|+|.+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34566666777766654 44688888654
No 339
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.81 E-value=0.025 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-++|.|+|++|+|||||++++..+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999887
No 340
>PRK04182 cytidylate kinase; Provisional
Probab=94.80 E-value=0.022 Score=52.78 Aligned_cols=22 Identities=55% Similarity=0.786 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|+|.|+.|+||||+|+.++.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 341
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.80 E-value=0.084 Score=51.41 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhccccc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKR 36 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~ 36 (692)
......+|++|-|||+-|+++++..--.+.|...
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~~~~~~~r 90 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCR 90 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcCccccccc
Confidence 4567889999999999999999885334556443
No 342
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.79 E-value=0.087 Score=55.19 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
-.+|+++|.+|+||||.|.+++.. .+..=..++.|+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~--l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYY--YQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCCEEEEcC
Confidence 368999999999999999999876 3332123455554
No 343
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.77 E-value=0.0012 Score=60.99 Aligned_cols=86 Identities=20% Similarity=0.106 Sum_probs=73.5
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLY 439 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 439 (692)
..++..++||++.+.+..+... |..++.|..|+++-+.+..+|..++.+..+..+++..|+.+..|.+.++.+++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 5667888899988888777777 888888999999988888889888888888888988888888999899999999988
Q ss_pred ccccccc
Q 048083 440 LNWIHSA 446 (692)
Q Consensus 440 l~~~~~~ 446 (692)
+-++.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8887755
No 344
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.75 E-value=0.077 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|.|..|.|||||++.+...
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~ 92 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARG 92 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 57899999999999999999987
No 345
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.74 E-value=0.13 Score=50.41 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-cccceEEecCccchHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-AKRAWIRVRGDAKFRDVLIDILQ 56 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~ 56 (692)
.++.|.|.+|+|||++|.+++.+ ..... ..++|++... +.+++...+..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~--~~~~~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAEN--IAKKQGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCceEEEeCCC--CHHHHHHHHHH
Confidence 58899999999999999999887 43332 3466776554 34455555543
No 346
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.74 E-value=0.027 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+|++.|.-|.||||+++.+++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999874
No 347
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.73 E-value=0.12 Score=54.22 Aligned_cols=85 Identities=16% Similarity=0.326 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc-chHHHHHHHHHHhhhhhhhc-------cCCChh----
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA-KFRDVLIDILQQIDDETLVE-------ASAPEA---- 71 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~-------~~~~~~---- 71 (692)
+.++|.|..|+|||||.+.+++... -+.++++-+.+.. ...++... .+....... ...+..
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~---~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIES---DLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHH---HhcccccceeEEEEECCCCCHHHHHH
Confidence 5789999999999999999999832 2455666555543 22333322 222211100 111111
Q ss_pred --HHHHHHHHHh--ccccEEEEEeCCCC
Q 048083 72 --DLVSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 72 --~~~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
...-.+.+++ +++++|+++||+-.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122244444 58999999999976
No 348
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.73 E-value=0.17 Score=47.66 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999887
No 349
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.70 E-value=0.12 Score=54.70 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhccc--ccceEEecCcc-chHHHHHHHHHHhhhh-hh---hccCCC------h
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFA--KRAWIRVRGDA-KFRDVLIDILQQIDDE-TL---VEASAP------E 70 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~--~~~wv~~~~~~-~~~~~~~~i~~~l~~~-~~---~~~~~~------~ 70 (692)
+.++|.|-.|+|||||+..+.++....+.+. .++++-+.+.. ...+++..+...=..+ .. .....+ .
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 5689999999999999999999743322222 34455554432 3344444443221110 00 000110 1
Q ss_pred hHHHHHHHHHhc---cccEEEEEeCCCC
Q 048083 71 ADLVSSLTTLLK---EISYLIVVEDVET 95 (692)
Q Consensus 71 ~~~~~~l~~~L~---~k~~LlVLDdv~~ 95 (692)
....-.+.++++ ++++|+++||+-.
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 112333566555 6789999999976
No 350
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.69 E-value=0.025 Score=51.96 Aligned_cols=22 Identities=50% Similarity=0.767 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999886
No 351
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.17 Score=56.39 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|..|+||||+|+.+++.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999877
No 352
>PRK13768 GTPase; Provisional
Probab=94.68 E-value=0.035 Score=54.48 Aligned_cols=24 Identities=46% Similarity=0.656 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+++|+|.||+||||++..+...
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHH
Confidence 357899999999999999888876
No 353
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.67 E-value=0.023 Score=51.05 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
||+|+|+.|+||||++.++...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999998
No 354
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.67 E-value=0.037 Score=49.25 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.||-++|.+|.||||+|.++++.
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHH
Confidence 48899999999999999999988
No 355
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.03 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|.|++|+|||||+++++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999998
No 356
>PTZ00035 Rad51 protein; Provisional
Probab=94.67 E-value=0.15 Score=52.18 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchh---h-cccccceEEecCccchHHHHHHHHHHh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVK---R-HFAKRAWIRVRGDAKFRDVLIDILQQI 58 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l 58 (692)
.++.|+|.+|+|||||+..++-..... + .=..++|++....++.+.+ ..+++..
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~ 176 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERF 176 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHh
Confidence 578999999999999999987552211 1 1123568887776666553 3334443
No 357
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.67 E-value=0.069 Score=47.69 Aligned_cols=23 Identities=52% Similarity=0.778 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|+|-.|+||+|||+.++--
T Consensus 40 QTlaiIG~NGSGKSTLakMlaGm 62 (267)
T COG4167 40 QTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred cEEEEEccCCCcHhHHHHHHhcc
Confidence 57899999999999999999543
No 358
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.65 E-value=0.029 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++++|+++|..|+|||||..++.+.
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999887
No 359
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.64 E-value=0.053 Score=51.16 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|+.|+||||+|+.+.+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999988
No 360
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.63 E-value=0.6 Score=44.62 Aligned_cols=22 Identities=27% Similarity=0.685 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.+||..|.|||++++++.+.
T Consensus 54 nvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 54 NVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred ceEEecCCCCCHHHHHHHHHHH
Confidence 3678999999999999999987
No 361
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.61 E-value=0.028 Score=51.85 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
.||+|+|++|+|||||.|.+..=+.+. .+.+|++-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g 63 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDG 63 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECC
Confidence 589999999999999999997764322 45777753
No 362
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.61 E-value=0.046 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++.-+.|.||+|+||||-+..+++.
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHH
Confidence 4566789999999999988888887
No 363
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.60 E-value=0.029 Score=47.88 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVD 28 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~ 28 (692)
.|.|+|..|+|||||.+.++....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 378999999999999999998753
No 364
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.59 E-value=0.15 Score=53.91 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhh-cccccceEEecCcc-chHHHHHHHHHHhhh-hhh---hccCCC------hh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKR-HFAKRAWIRVRGDA-KFRDVLIDILQQIDD-ETL---VEASAP------EA 71 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-~~~---~~~~~~------~~ 71 (692)
+.++|.|-+|+|||||+..+.+. ... +-+.++++-+.+.. ...++...+...=.. ... .....+ ..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~--~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFN--ISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHH--HHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 57899999999999999999988 432 33556676655443 333444444322110 000 000111 11
Q ss_pred HHHHHHHHHh---ccccEEEEEeCCCC
Q 048083 72 DLVSSLTTLL---KEISYLIVVEDVET 95 (692)
Q Consensus 72 ~~~~~l~~~L---~~k~~LlVLDdv~~ 95 (692)
...-.+.+++ +++++|+++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 2233455555 37899999999965
No 365
>PLN02924 thymidylate kinase
Probab=94.57 E-value=0.085 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
..|+|-|..|+||||+|+.+.+..
T Consensus 17 ~~IviEGiDGsGKsTq~~~L~~~l 40 (220)
T PLN02924 17 ALIVLEGLDRSGKSTQCAKLVSFL 40 (220)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999884
No 366
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.57 E-value=0.033 Score=59.77 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.++|++|.|||.+|+++++.
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34789999999999999999998
No 367
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.57 E-value=0.16 Score=54.40 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|..|+||||+|+.+++.
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999876
No 368
>PRK14527 adenylate kinase; Provisional
Probab=94.57 E-value=0.03 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|.|.|.+|+||||+|+.+++.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999877
No 369
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.56 E-value=0.027 Score=50.31 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|++|+|+.|+|||||..++...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 479999999999999999999888
No 370
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.55 E-value=0.21 Score=54.11 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+..++|..|+||||+|+.+++.
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~ 59 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARA 59 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999988776
No 371
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.51 E-value=0.11 Score=58.54 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhh---ccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLV---EASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 80 (692)
+++-|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++..... ......++....+...
T Consensus 61 siteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~l 133 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 133 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHH
Confidence 57889999999999999887765 32222447888877766632 45555442211 1333445555556665
Q ss_pred hcc-ccEEEEEeCCCC
Q 048083 81 LKE-ISYLIVVEDVET 95 (692)
Q Consensus 81 L~~-k~~LlVLDdv~~ 95 (692)
++. +--|||+|-|..
T Consensus 134 v~~~~~~LVVIDSI~a 149 (790)
T PRK09519 134 IRSGALDIVVIDSVAA 149 (790)
T ss_pred hhcCCCeEEEEcchhh
Confidence 543 567899998764
No 372
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.51 E-value=0.025 Score=52.34 Aligned_cols=21 Identities=43% Similarity=0.699 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048083 5 IIAILGERGSGKTTLARTVYD 25 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~ 25 (692)
+|+|+|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 373
>PRK05439 pantothenate kinase; Provisional
Probab=94.50 E-value=0.033 Score=55.74 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-+|||.|.+|+||||+|+.+...
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
No 374
>PRK01184 hypothetical protein; Provisional
Probab=94.50 E-value=0.028 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|++|+||||+|+ ++.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 589999999999999987 4444
No 375
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.50 E-value=0.028 Score=50.47 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.++||.|+||||+.++++..
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~ 25 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKA 25 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHH
Confidence 4789999999999999999877
No 376
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.50 E-value=0.084 Score=49.62 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-+++.|.|.+|.||||+++.+...
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~ 41 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA 41 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH
Confidence 468899999999999999998876
No 377
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.49 E-value=0.029 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
|+|+|.|-||+||||++..++.-
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~ 23 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAA 23 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHH
Confidence 57999999999999988888776
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.48 E-value=0.029 Score=49.36 Aligned_cols=24 Identities=42% Similarity=0.714 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+++|+|..|+|||||.+.++...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 579999999999999999997763
No 379
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.48 E-value=0.031 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+++|+|..|.||||+|+.++...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999873
No 380
>PRK05922 type III secretion system ATPase; Validated
Probab=94.48 E-value=0.068 Score=56.01 Aligned_cols=88 Identities=14% Similarity=0.223 Sum_probs=47.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc-cchHHHHHHHHHHhhhhhhhc--cCCC--------hhH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD-AKFRDVLIDILQQIDDETLVE--ASAP--------EAD 72 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~--~~~~--------~~~ 72 (692)
+.++|.|..|+|||||++.+.+... .+..+++-+.+. ....+.+.+.......+...- ...+ ...
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999998732 233333323222 122334433332221111000 0111 111
Q ss_pred HHHHHHHHh--ccccEEEEEeCCCC
Q 048083 73 LVSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 73 ~~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
..-.+.+++ +++.+|+++||+-.
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 222344444 57899999999976
No 381
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.47 E-value=0.18 Score=53.23 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-cccceEEecCcc-chHHHHHHHHHHhhhh-hh---hccCCC------hh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-AKRAWIRVRGDA-KFRDVLIDILQQIDDE-TL---VEASAP------EA 71 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-~~---~~~~~~------~~ 71 (692)
+.++|.|-+|+|||||+..+... .+... +.++++-+.+.. ...+++..+...=..+ .. .....+ ..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 57899999999999999998877 43322 235566555443 3344444444321110 00 001111 11
Q ss_pred HHHHHHHHHh---ccccEEEEEeCCCC
Q 048083 72 DLVSSLTTLL---KEISYLIVVEDVET 95 (692)
Q Consensus 72 ~~~~~l~~~L---~~k~~LlVLDdv~~ 95 (692)
...-.+.+++ +++.+|+++||+-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 2233366666 67899999999965
No 382
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.0025 Score=57.78 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=45.2
Q ss_pred CccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccE-EEEecCCCCcccEEEeccCCCCcEEEe-cCCCccccce
Q 048083 555 RNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKK-MTCQAGGFPQLRVLKLWNLSSLEEWTV-QEAAMPRLRE 632 (692)
Q Consensus 555 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 632 (692)
-.++.++-+++.+....++.+..++.++.|.+.+|.+.++. +....+..|+|+.|+|++|+.+++--. ....+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 35777777777777777777777777777777665543321 111112345555555555555543211 1123455555
Q ss_pred eeccc
Q 048083 633 LEIRS 637 (692)
Q Consensus 633 L~l~~ 637 (692)
|.|.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55554
No 383
>PLN02796 D-glycerate 3-kinase
Probab=94.46 E-value=0.065 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-+|||.|..|+||||||+.+...
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999999987
No 384
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.46 E-value=0.033 Score=55.83 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD 44 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 44 (692)
.++|+|+|-||+||||+|..++.-... ..+ .++-|+.+..
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~-~G~-rVLliD~Dpq 40 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAE-SGK-KVLVVGCDPK 40 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh-CCC-EEEEEeeCCc
Confidence 368999999999999998888777321 122 2445555444
No 385
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.44 E-value=0.029 Score=51.54 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|+|+.|+||||+|+.+.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999987
No 386
>PLN02200 adenylate kinase family protein
Probab=94.44 E-value=0.032 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|.|.|++|+||||+|+.++..
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999876
No 387
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.43 E-value=0.11 Score=46.49 Aligned_cols=19 Identities=53% Similarity=0.725 Sum_probs=18.0
Q ss_pred EEcCCCCcHHHHHHHHHcc
Q 048083 8 ILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 8 I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|++|+||||+|+.++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~ 19 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKR 19 (151)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHh
Confidence 7899999999999999987
No 388
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.43 E-value=0.029 Score=45.65 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++.+.|.+|+||||+|..++..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999988
No 389
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=94.42 E-value=0.041 Score=52.82 Aligned_cols=40 Identities=30% Similarity=0.267 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA 45 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~ 45 (692)
|.|+|+|-|||||||.|..+..- ....-..+.-|-++...
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaa--la~~G~kVl~iGCDPK~ 40 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAA--LAEMGKKVLQIGCDPKA 40 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESSSS
T ss_pred CeEEEEcCCCcccChhhhHHHHH--HHhccceeeEecccCCC
Confidence 57999999999999999888766 44444456666655543
No 390
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.42 E-value=0.12 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|.|.|.+|+||||+|..+..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6899999999999999999876
No 391
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.41 E-value=0.082 Score=55.39 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|.|..|+|||||++.+...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 57899999999999999999887
No 392
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.40 E-value=0.032 Score=55.87 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAK 46 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~ 46 (692)
+.|+|+|-||+||||+|..++.-...+ .+ .++-|+...+.+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~-G~-~VlliD~D~q~~ 41 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM-GK-KVMIVGCDPKAD 41 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC-CC-eEEEEeCCCCCC
Confidence 578999999999999998888773222 22 244455554443
No 393
>PRK06761 hypothetical protein; Provisional
Probab=94.40 E-value=0.046 Score=53.92 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
++|.|.|++|+||||+|+.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999984
No 394
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.38 E-value=0.13 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+++|.|..|.|||||++.++...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998874
No 395
>PRK08356 hypothetical protein; Provisional
Probab=94.36 E-value=0.039 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVY 24 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~ 24 (692)
-.+|+|+|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999993
No 396
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.36 E-value=0.075 Score=55.89 Aligned_cols=90 Identities=11% Similarity=0.212 Sum_probs=53.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchh-hcccccceEEecCcc-chHHHHHHHHHHhhh-hhh---hccCCC------hh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVK-RHFAKRAWIRVRGDA-KFRDVLIDILQQIDD-ETL---VEASAP------EA 71 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-~~~---~~~~~~------~~ 71 (692)
+.++|.|-+|+|||+|+..+.+. .+ .+-+.++|+-+.+.. ...++...+...=.. ... .....+ ..
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~--~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHN--MVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 56899999999999999999888 43 223567787765543 333444443332100 000 001111 11
Q ss_pred HHHHHHHHHhc---cccEEEEEeCCCC
Q 048083 72 DLVSSLTTLLK---EISYLIVVEDVET 95 (692)
Q Consensus 72 ~~~~~l~~~L~---~k~~LlVLDdv~~ 95 (692)
...-.+.++++ ++++|+++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 22334566654 5899999999976
No 397
>PRK06620 hypothetical protein; Validated
Probab=94.36 E-value=0.034 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.+.|||++|+|||+||+++++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999998887
No 398
>PRK05973 replicative DNA helicase; Provisional
Probab=94.35 E-value=0.079 Score=50.93 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLID 53 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 53 (692)
.++.|.|.+|+|||++|.+++.. ....=..+++++.... ..++...
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHH
Confidence 57899999999999999999887 3223234666666554 3344444
No 399
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.35 E-value=0.026 Score=51.36 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|+|-.|+|||||++++...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 3799999999999999999865
No 400
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.33 E-value=0.081 Score=55.40 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++++|.|..|.|||||+..+.+.
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~ 160 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARY 160 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999887
No 401
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.32 E-value=0.049 Score=62.76 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.++.++|++|+|||++|+++++.
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999998
No 402
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.30 E-value=0.07 Score=61.34 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.++|.+|.|||+||+++++.
T Consensus 213 ~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHHH
Confidence 45789999999999999999987
No 403
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.30 E-value=0.093 Score=60.14 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|.+|+|||++|+.++++
T Consensus 206 ~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999988
No 404
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.30 E-value=0.031 Score=52.59 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|.|++|+||||+|+.++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999887
No 405
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.27 E-value=0.034 Score=53.84 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=21.9
Q ss_pred EEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 8 ILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 8 I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
|+|++|+||||+++.+.+. ....-..++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHH--HHhccCCceEEEc
Confidence 6899999999999999988 4444334445554
No 406
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.24 E-value=0.04 Score=46.81 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|+|.|+.|+|||||..++.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 799999999999999999975
No 407
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.24 E-value=0.033 Score=58.30 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++.|+|+|..|.||||||+++++.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999976
No 408
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.23 E-value=0.038 Score=51.59 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecC
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRG 43 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 43 (692)
++.|.|.+|+|||++|.+++.. ....=..++|++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC
Confidence 3689999999999999998877 322224467877654
No 409
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.21 E-value=0.096 Score=45.40 Aligned_cols=27 Identities=30% Similarity=0.690 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHF 33 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F 33 (692)
+|.|.|.+|.||||+++++... ..-.|
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~--l~~~F 40 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEE--LGLKF 40 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHH--hCCcc
Confidence 8899999999999999999998 54444
No 410
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.20 E-value=0.28 Score=54.82 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|+.|+||||+|+.++..
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999876
No 411
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.20 E-value=0.14 Score=46.63 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=45.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc-
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE- 83 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~- 83 (692)
++.|.|.+|+|||++|.++... ....++++.-.+..+. ++.+.|.+..... + ..+...+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R--~-~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRR--P-AHWRTIETPRDLVSALKEL 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhC--C-CCceEeecHHHHHHHHHhc
Confidence 3679999999999999999765 1234556655554443 3444444422211 1 222222333344444422
Q ss_pred -ccEEEEEeCCC
Q 048083 84 -ISYLIVVEDVE 94 (692)
Q Consensus 84 -k~~LlVLDdv~ 94 (692)
+.-.|++|.+.
T Consensus 72 ~~~~~VLIDclt 83 (169)
T cd00544 72 DPGDVVLIDCLT 83 (169)
T ss_pred CCCCEEEEEcHh
Confidence 23378899874
No 412
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.20 E-value=0.036 Score=55.37 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|-||+||||+|..++.-
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~ 24 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAA 24 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 68999999999999998888776
No 413
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.20 E-value=0.2 Score=55.68 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.++|..|+||||+|+.++..
T Consensus 41 ayLf~Gp~G~GKtt~A~~lAk~ 62 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFAKT 62 (614)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998776
No 414
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.19 E-value=0.041 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-+.|.|+|++|+|||||++.+...
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 367899999999999999999765
No 415
>PRK15453 phosphoribulokinase; Provisional
Probab=94.17 E-value=0.043 Score=53.56 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|+|.|-+|+||||+|+++...
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 416
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.17 E-value=0.044 Score=49.26 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.++|+|+|..|+|||||+.++...
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999987
No 417
>PLN02165 adenylate isopentenyltransferase
Probab=94.16 E-value=0.036 Score=55.70 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|+.|+||||||..++..
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 48999999999999999999888
No 418
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.16 E-value=0.075 Score=54.30 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc----cccceEEecCccchHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF----AKRAWIRVRGDAKFRDVLI 52 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~ 52 (692)
.++-|+|.+|+|||++|.+++........+ ..++||+....++.+.+.+
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 578899999999999999998763221111 3688999888777665543
No 419
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.14 E-value=0.04 Score=53.23 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIR 40 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 40 (692)
.+++|.|+.|+|||||.+.++.- .+ --.+.++++
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~--l~-p~~G~V~l~ 62 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGL--LK-PKSGEVLLD 62 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc--CC-CCCCEEEEC
Confidence 58999999999999999999996 22 224455554
No 420
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.14 E-value=0.11 Score=54.43 Aligned_cols=89 Identities=13% Similarity=0.206 Sum_probs=51.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhh--ccc---------ccceEEecCccchHHHHHHHHHHhhhhh-hhc------
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKR--HFA---------KRAWIRVRGDAKFRDVLIDILQQIDDET-LVE------ 65 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~--~F~---------~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~------ 65 (692)
+.++|.|-.|+|||||+..+.++.+..+ ..| .++++-+.+.. +....+.+.+.... ...
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerr---e~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNM---ETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeeh---HHHHHHHHHHHhcCCcceEEEEEE
Confidence 5789999999999999999998843100 012 34555566553 33333444443322 100
Q ss_pred -cCC-C-----hhHHHHHHHHHhc---cccEEEEEeCCCC
Q 048083 66 -ASA-P-----EADLVSSLTTLLK---EISYLIVVEDVET 95 (692)
Q Consensus 66 -~~~-~-----~~~~~~~l~~~L~---~k~~LlVLDdv~~ 95 (692)
... . .....-.+.++++ ++.+|+++||+-.
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 011 1 1112333566665 5899999999965
No 421
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.14 E-value=0.26 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.++|+.|+||||+|+.+++..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999998873
No 422
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.11 E-value=0.046 Score=52.04 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAK 35 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~ 35 (692)
..|.++||+|.||||..+.++.. +..++..
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~p 49 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLNSH--LHAKKTP 49 (366)
T ss_pred cEEEEEecCCCCchhHHHHHHHH--HhhccCC
Confidence 36788999999999999999998 5555543
No 423
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.11 E-value=0.17 Score=51.90 Aligned_cols=87 Identities=20% Similarity=0.231 Sum_probs=44.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc-chHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA-KFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL 81 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 81 (692)
-++|+++|+.|+||||-..+++.+.....+=..+..++.+.-- ...+.++.-++-+..... ...+..+....+.. +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~-l 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA-L 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH-h
Confidence 3799999999999987655554442212333456677654321 222333333333333322 34444444444333 3
Q ss_pred ccccEEEEEeCC
Q 048083 82 KEISYLIVVEDV 93 (692)
Q Consensus 82 ~~k~~LlVLDdv 93 (692)
++.. +|..|=+
T Consensus 280 ~~~d-~ILVDTa 290 (407)
T COG1419 280 RDCD-VILVDTA 290 (407)
T ss_pred hcCC-EEEEeCC
Confidence 3433 4444543
No 424
>PRK13695 putative NTPase; Provisional
Probab=94.11 E-value=0.042 Score=50.65 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999887
No 425
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=94.11 E-value=0.05 Score=54.76 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA 45 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~ 45 (692)
|+|+|+|-||+||||+|..++.- ....=..++-|+.+...
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~--La~~g~rVLlID~Dpq~ 40 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHM--MAEMGKRVLQLGCDPKH 40 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEecCCC
Confidence 58899999999999999999887 43332235566665544
No 426
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.10 E-value=0.14 Score=53.77 Aligned_cols=88 Identities=11% Similarity=0.231 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc-cchHHHHHHHHHHhhh-hhh---hccCCC------hhH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD-AKFRDVLIDILQQIDD-ETL---VEASAP------EAD 72 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~-~~~---~~~~~~------~~~ 72 (692)
++++|.|..|+|||||++.+.+.. ..+..+++-+.+. ....+.+......=.. ... .....+ ...
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHH
Confidence 578999999999999999998873 2333444443332 2333333332211000 000 000111 111
Q ss_pred HHHHHHHHh--ccccEEEEEeCCCC
Q 048083 73 LVSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 73 ~~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
..-.+.+++ +++++|+++||+-.
T Consensus 232 ~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 232 VATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 122344444 47899999999975
No 427
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.26 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.++|..|+||||+|+.+++..
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHHh
Confidence 45789999999999999998883
No 428
>PF13245 AAA_19: Part of AAA domain
Probab=94.09 E-value=0.047 Score=42.12 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=17.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+++.|.|.+|.|||+++.+....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56788999999999655555444
No 429
>PRK14531 adenylate kinase; Provisional
Probab=94.09 E-value=0.04 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|.|++|+||||+|+.++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999887
No 430
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.075 Score=49.84 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|..|.|||||.+.+..-
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhcc
Confidence 47999999999999999999885
No 431
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.07 E-value=0.044 Score=58.98 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+..+|||.|.+|.||||||+.+...
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhh
Confidence 3569999999999999999999876
No 432
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.07 E-value=0.13 Score=54.12 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|.|..|+|||||++.+...
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRF 191 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999876
No 433
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.05 E-value=0.057 Score=53.90 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhccc-ccceEEecCccc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFA-KRAWIRVRGDAK 46 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~~~~~~~ 46 (692)
.++|+|.|-||+||||+|..++.- ... -. .++-|+.+.+.+
T Consensus 1 m~~iav~~KGGvGKTT~~~nLA~~--La~-~G~kVlliD~Dpq~n 42 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAA--LAE-MGKKVMIVGCDPKAD 42 (270)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHH--HHh-CCCeEEEEEcCCCCC
Confidence 367889999999999999998887 332 22 355567665544
No 434
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.03 E-value=0.049 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.|.|+|++|+|||||+..+..+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999888
No 435
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.03 E-value=0.44 Score=49.44 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
...+-|||..|.|||-|++++.+. ..........+.+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~ 149 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL 149 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec
Confidence 346889999999999999999999 6666654444444
No 436
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.01 E-value=0.042 Score=49.83 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|+++|.+|+|||||++++..+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998764
No 437
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.00 E-value=0.039 Score=53.02 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
..|+|+|.+|+|||||+.++..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 468999999999999999999884
No 438
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.99 E-value=0.13 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++++|.|..|+|||||++.++..
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999887
No 439
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.97 E-value=0.15 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++++|.|..|+|||||++.+...
T Consensus 156 Q~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred eEEEEECCCCCCccHHHHHHhcc
Confidence 67999999999999999999886
No 440
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.97 E-value=0.059 Score=45.58 Aligned_cols=21 Identities=48% Similarity=0.589 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|++.|.||+||||+|..++..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999887
No 441
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.035 Score=60.20 Aligned_cols=79 Identities=15% Similarity=0.299 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
.+++++|++|+|||+||+.+++- +...|- =+++...-+..++-.+-... ...-+....+.+++. +.
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~a--l~Rkfv---R~sLGGvrDEAEIRGHRRTY--------IGamPGrIiQ~mkka-~~ 416 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKA--LGRKFV---RISLGGVRDEAEIRGHRRTY--------IGAMPGKIIQGMKKA-GV 416 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHH--hCCCEE---EEecCccccHHHhccccccc--------cccCChHHHHHHHHh-CC
Confidence 48899999999999999999998 655552 12333333433332221111 122334455555543 34
Q ss_pred ccEEEEEeCCCCc
Q 048083 84 ISYLIVVEDVETP 96 (692)
Q Consensus 84 k~~LlVLDdv~~~ 96 (692)
+.=+++||.||..
T Consensus 417 ~NPv~LLDEIDKm 429 (782)
T COG0466 417 KNPVFLLDEIDKM 429 (782)
T ss_pred cCCeEEeechhhc
Confidence 4557889999864
No 442
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=93.92 E-value=0.091 Score=47.37 Aligned_cols=41 Identities=29% Similarity=0.266 Sum_probs=30.3
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHcccchhhcccccceEEecCccc
Q 048083 4 QIIAILG-ERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAK 46 (692)
Q Consensus 4 ~vv~I~G-~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~ 46 (692)
|+|+|+| .||+||||+|..++.. +...-..++.|+......
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~--la~~~~~Vllid~~~~~~ 42 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAA--LARKGKKVLLIDFDFFSP 42 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH--HHHTTT-EEEEE--SSS-
T ss_pred CEEEEECCCCCCCHHHHHHHHHHH--HHhcCCCeEEEECCCCCC
Confidence 6899999 7899999999999998 655554478888765543
No 443
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.92 E-value=0.13 Score=50.28 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=46.6
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHcccchhhccccc-ceEEecCcc-chHHHHHHHHHHhhhh-hh---hccCCChhH----
Q 048083 4 QIIAILGERGSGKTTLA-RTVYDRVDVKRHFAKR-AWIRVRGDA-KFRDVLIDILQQIDDE-TL---VEASAPEAD---- 72 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa-~~~~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~-~~---~~~~~~~~~---- 72 (692)
+.++|.|-.|+|||+|| ..+.++ . .-+.+ +++-+.+.. ...++.+.+...=... .. .........
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 56899999999999996 555554 1 23444 455555443 3344444443221100 00 001111111
Q ss_pred --HHHHHHHHh--ccccEEEEEeCCCC
Q 048083 73 --LVSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 73 --~~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
..-.+.+++ +++.+|||+||+-.
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 112233333 57899999999876
No 444
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.91 E-value=0.045 Score=55.60 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|.+.|.+|+||||+|+++..+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 57888999999999999999887
No 445
>PRK14528 adenylate kinase; Provisional
Probab=93.90 E-value=0.047 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|.|++|+||||+|+.++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999876
No 446
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.90 E-value=0.051 Score=52.01 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVL 51 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 51 (692)
-.+|||+|.||+|||||.-++.....-+++==+++=|+-+..++--.++
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 4689999999999999999998873221111123344555555433333
No 447
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.88 E-value=0.15 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++++|.|..|+|||||++.+...
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999999887
No 448
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.88 E-value=0.11 Score=60.49 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.++.++|+.|+|||++|+++++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999876
No 449
>PLN02348 phosphoribulokinase
Probab=93.88 E-value=0.053 Score=55.61 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.-+|||.|.+|+||||+|+.+.+.
T Consensus 49 p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 49 TVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999987
No 450
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.88 E-value=0.11 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-+|||.|..|.|||||++.+..-
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~l 235 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYL 235 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999655
No 451
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.2 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|..+|++|.|||-||++++-+
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh
Confidence 45788999999999999999998
No 452
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.82 E-value=0.052 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 048083 4 QIIAILGERGSGKTTLARTVYD 25 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~ 25 (692)
.+++|+|..|+|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5789999999999999999864
No 453
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.81 E-value=1.1 Score=46.45 Aligned_cols=87 Identities=15% Similarity=0.300 Sum_probs=58.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhccc--ccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFA--KRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLK 82 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 82 (692)
-+-|.|-+|.|||.+...++.+ ...... .++.++...-.....++..|...+..... ......+....+.++.+
T Consensus 177 SlYVsG~PGtgkt~~l~rvl~~--~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~--s~~~~~~~~~~~~~h~~ 252 (529)
T KOG2227|consen 177 SLYVSGQPGTGKTALLSRVLDS--LSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLV--SPGTGMQHLEKFEKHTK 252 (529)
T ss_pred ceEeeCCCCcchHHHHHHHHHh--hhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHh
Confidence 4678999999999999999998 433332 24666655445667788888877733222 22223556666777665
Q ss_pred cc--cEEEEEeCCCC
Q 048083 83 EI--SYLIVVEDVET 95 (692)
Q Consensus 83 ~k--~~LlVLDdv~~ 95 (692)
.. -+++|+|..|.
T Consensus 253 q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 253 QSKFMLLLVLDEMDH 267 (529)
T ss_pred cccceEEEEechhhH
Confidence 54 58999999875
No 454
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.81 E-value=0.096 Score=60.83 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-+.++|.+|+|||++|+.++.+
T Consensus 202 n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999988
No 455
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.80 E-value=0.12 Score=59.41 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.++|++|.|||++|+++++.
T Consensus 489 giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 4788999999999999999998
No 456
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.80 E-value=0.036 Score=51.81 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEE
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIR 40 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 40 (692)
..+|.+.|++|.|||.||.+.+-+.-..+.|+.++++.
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 46899999999999999999998865568888888774
No 457
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.77 E-value=0.25 Score=52.38 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=49.4
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHcccchh-----hcccccceEEecCccchHHHHHHHHHHhhhhhhhc--------cCCC
Q 048083 4 QIIAILGERGSGKTTLA-RTVYDRVDVK-----RHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVE--------ASAP 69 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa-~~~~~~~~~~-----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--------~~~~ 69 (692)
+.++|.|-.|+|||+|| -.+.++..+. +.-+.++++-+.+... ++.. +.+.+......+ ...+
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~r--EV~e-i~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCS--NVAR-IHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchH--HHHH-HHHHHHhcCCccceEEEEECCCCC
Confidence 56899999999999997 5567764221 1224466777766543 2222 334433322100 0111
Q ss_pred -hh-----HHHHHHHHHh--ccccEEEEEeCCCC
Q 048083 70 -EA-----DLVSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 70 -~~-----~~~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
.. ...-.+.+++ +++.+|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 10 0122233333 57899999999976
No 458
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=93.76 E-value=0.051 Score=51.01 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|+|+||+|+||||.|+.+-..
T Consensus 2 iI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhc
Confidence 7999999999999999998554
No 459
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.75 E-value=0.1 Score=60.39 Aligned_cols=68 Identities=12% Similarity=0.197 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcccchhhcccc-------cceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHH
Q 048083 6 IAILGERGSGKTTLARTVYDRVDVKRHFAK-------RAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLT 78 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~~~~~~~F~~-------~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 78 (692)
+.++|.+|+||||+|+.++++ +....-. .+.++.+.-.. ......+...+++
T Consensus 211 ~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l~a-------------------g~~~~ge~e~~lk 269 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLLQA-------------------GASVKGEFENRLK 269 (852)
T ss_pred eeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhhhc-------------------ccccchHHHHHHH
Q ss_pred HHhc-----cccEEEEEeCCC
Q 048083 79 TLLK-----EISYLIVVEDVE 94 (692)
Q Consensus 79 ~~L~-----~k~~LlVLDdv~ 94 (692)
+.+. ++++.|++|++.
T Consensus 270 ~ii~e~~~~~~~~ILfIDEih 290 (852)
T TIGR03345 270 SVIDEVKASPQPIILFIDEAH 290 (852)
T ss_pred HHHHHHHhcCCCeEEEEeChH
No 460
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=93.75 E-value=0.15 Score=47.89 Aligned_cols=39 Identities=33% Similarity=0.386 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD 44 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 44 (692)
..|+|=|+-|+||||.++.++.. .+.....++|..-...
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~--l~~~g~~v~~trEP~~ 42 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKER--LEERGIKVVLTREPGG 42 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCCC
Confidence 57899999999999999999999 6555545666544333
No 461
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.065 Score=58.67 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|-++|++|.|||.||+++++.
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~ 299 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALE 299 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999996
No 462
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.73 E-value=0.3 Score=56.05 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+.++|..|+||||+|+.+++..
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999998874
No 463
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.73 E-value=0.052 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 47899999999999999999987
No 464
>PRK12338 hypothetical protein; Provisional
Probab=93.71 E-value=0.053 Score=54.27 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+|.|.|.+|+||||+|++++.+.
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
Confidence 589999999999999999999884
No 465
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.71 E-value=0.054 Score=51.75 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|.|..|.|||||++.++..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999986
No 466
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=93.70 E-value=0.051 Score=54.29 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|.|-||+||||+|..++.-
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~ 24 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAG 24 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHH
Confidence 68999999999999999888776
No 467
>COG4240 Predicted kinase [General function prediction only]
Probab=93.69 E-value=0.092 Score=48.66 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=46.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-cccceEEecCccchHHHHHHHHHHhhh---hhhhccCCChhHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-AKRAWIRVRGDAKFRDVLIDILQQIDD---ETLVEASAPEADLVSSLTT 79 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~---~~~~~~~~~~~~~~~~l~~ 79 (692)
-+|||.|+-|.||||+|..+++. ...+. +.+.-.+.+.-+-..+-...++++... .......-+..-....+..
T Consensus 51 li~gisGpQGSGKStls~~i~~~--L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLna 128 (300)
T COG4240 51 LIVGISGPQGSGKSTLSALIVRL--LAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLNA 128 (300)
T ss_pred eEEEeecCCCCchhhHHHHHHHH--HHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHHH
Confidence 37999999999999999999999 44444 456666555444334444445555311 0001133344444555555
Q ss_pred Hhccc
Q 048083 80 LLKEI 84 (692)
Q Consensus 80 ~L~~k 84 (692)
..+++
T Consensus 129 i~~g~ 133 (300)
T COG4240 129 IARGG 133 (300)
T ss_pred HhcCC
Confidence 55665
No 468
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.69 E-value=0.12 Score=54.79 Aligned_cols=90 Identities=13% Similarity=0.193 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-cccceEEecCcc-chHHHHHHHHHHhhh-hh-------h-hccCCC---
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-AKRAWIRVRGDA-KFRDVLIDILQQIDD-ET-------L-VEASAP--- 69 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~~~~-~~~~~~~~i~~~l~~-~~-------~-~~~~~~--- 69 (692)
+.++|.|-.|+|||||+..+... +.... +.++++-+.+.. ...+++..+...=-. .. . --...+
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~--~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHH--HHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 57899999999999999998877 33222 567777665543 334455444431000 00 0 000111
Q ss_pred -----hhHHHHHHHHHhc--cc-cEEEEEeCCCC
Q 048083 70 -----EADLVSSLTTLLK--EI-SYLIVVEDVET 95 (692)
Q Consensus 70 -----~~~~~~~l~~~L~--~k-~~LlVLDdv~~ 95 (692)
.....-.+.++++ ++ .+||++||+-.
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 1123444677774 34 99999999976
No 469
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.68 E-value=0.047 Score=53.04 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLID 53 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 53 (692)
-.||||+|.||+|||||.-++-.+..-+++==+++=|+-+..++--.++.+
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 358999999999999999998877422222223444566666655454443
No 470
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.68 E-value=0.21 Score=48.73 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=58.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceE-EecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWI-RVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv-~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
.+.|+|+.|+|||+-++.+++.. ...|+ ..+..++...++..+........ .....+...++..++++
T Consensus 96 l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~----~~~~~d~~~~~~~~l~~ 164 (297)
T COG2842 96 LVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIICAAAFGAT----DGTINDLTERLMIRLRD 164 (297)
T ss_pred eEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHcc
Confidence 67899999999999999999882 34454 56666666666666655555432 23455666777777788
Q ss_pred ccEEEEEeCCCC
Q 048083 84 ISYLIVVEDVET 95 (692)
Q Consensus 84 k~~LlVLDdv~~ 95 (692)
..-+|+.|+.+.
T Consensus 165 ~~~~iivDEA~~ 176 (297)
T COG2842 165 TVRLIIVDEADR 176 (297)
T ss_pred Ccceeeeehhhc
Confidence 888999998876
No 471
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.64 E-value=0.058 Score=49.92 Aligned_cols=23 Identities=48% Similarity=0.758 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|.|..|.|||||++.++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999876
No 472
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.64 E-value=0.066 Score=47.66 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|++.|.+|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999876
No 473
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.63 E-value=0.16 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|.|..|.|||||++.+++.
T Consensus 138 qri~I~G~sG~GKTtLl~~i~~~ 160 (413)
T TIGR03497 138 QRVGIFAGSGVGKSTLLGMIARN 160 (413)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999887
No 474
>PRK06820 type III secretion system ATPase; Validated
Probab=93.63 E-value=0.27 Score=51.77 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|.|..|+|||||++.++..
T Consensus 164 qri~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhcc
Confidence 47899999999999999999876
No 475
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.62 E-value=0.05 Score=51.90 Aligned_cols=21 Identities=38% Similarity=0.707 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|.|++|+||||+|+.++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999876
No 476
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.61 E-value=0.071 Score=53.09 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecC
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRG 43 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 43 (692)
+|+|.|-||+||||+|..++.- ....=..++-|+.+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~--la~~G~rvlliD~Dp 38 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVA--LAKRGKKVLQIGCDP 38 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHH--HHHCCCcEEEEecCC
Confidence 6888999999999999888777 433322344455443
No 477
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.61 E-value=0.057 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|.|..|.|||||++.+...
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999886
No 478
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.61 E-value=0.2 Score=52.74 Aligned_cols=90 Identities=14% Similarity=0.213 Sum_probs=51.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-cccceEEecCcc-chHHHHHHHHHHhhh-hhh---hccCCC------hh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-AKRAWIRVRGDA-KFRDVLIDILQQIDD-ETL---VEASAP------EA 71 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~~~~-~~~~~~~~i~~~l~~-~~~---~~~~~~------~~ 71 (692)
+.++|.|.+|+|||||+..+.+. ..... +.++++-+.+.. ...+++..+...=.. ... .....+ ..
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~--~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHH--HHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 56899999999999999999887 43222 245666665443 334454444321100 000 001111 11
Q ss_pred HHHHHHHHHh---ccccEEEEEeCCCC
Q 048083 72 DLVSSLTTLL---KEISYLIVVEDVET 95 (692)
Q Consensus 72 ~~~~~l~~~L---~~k~~LlVLDdv~~ 95 (692)
...-.+.+++ +++.+|+|+||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1233456666 46799999999976
No 479
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.61 E-value=0.056 Score=49.22 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
-|+++|.+|+|||||+.++..+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998874
No 480
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.58 E-value=0.048 Score=54.06 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|||.|..|+||||+|+.+...
T Consensus 1 iigI~G~sGsGKSTl~~~L~~l 22 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSL 22 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999876
No 481
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.57 E-value=0.21 Score=52.50 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhh--h-hc-cCCC------hhHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDET--L-VE-ASAP------EADL 73 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~-~~-~~~~------~~~~ 73 (692)
+.++|.|..|.|||||++.++... +.. .+++.+.-.+.....+.+...+..-.... . .. ...+ ....
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~--~~~-~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~ 233 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNA--KAD-INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKL 233 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccC--CCC-eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHH
Confidence 578999999999999999999873 221 12222221222344444443333311100 0 00 0111 1112
Q ss_pred HHHHHHHh--ccccEEEEEeCCCC
Q 048083 74 VSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 74 ~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
...+.+++ +++.+|||+||+-.
T Consensus 234 a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 234 ATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHcCCcEEEEecchHH
Confidence 22233333 47899999999876
No 482
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.27 Score=47.60 Aligned_cols=69 Identities=22% Similarity=0.426 Sum_probs=42.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHH-hc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTL-LK 82 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-L~ 82 (692)
+-|.++|++|.||+.||++++-+.. +. |++++.+ ++.....+... .+...+-+. -.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAn--ST-----FFSvSSS--------DLvSKWmGESE--------kLVknLFemARe 223 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVSSS--------DLVSKWMGESE--------KLVKNLFEMARE 223 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcC--Cc-----eEEeehH--------HHHHHHhccHH--------HHHHHHHHHHHh
Confidence 5678899999999999999999843 33 4455543 22333333211 222222222 24
Q ss_pred cccEEEEEeCCCC
Q 048083 83 EISYLIVVEDVET 95 (692)
Q Consensus 83 ~k~~LlVLDdv~~ 95 (692)
.|+..|.+|.|+.
T Consensus 224 ~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 224 NKPSIIFIDEIDS 236 (439)
T ss_pred cCCcEEEeehhhh
Confidence 6788999998874
No 483
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.56 E-value=0.094 Score=54.10 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=50.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
..|.|.|..|.||||+++++.+. +.......++.--.. .+-.... ...+..+.. .........+.++..|+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~tiEdp---~E~~~~~-~~~~i~q~e--vg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIITIEDP---IEYVHRN-KRSLINQRE--VGLDTLSFANALRAALRE 194 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEEEcCC---hhhhccC-ccceEEccc--cCCCCcCHHHHHHHhhcc
Confidence 57899999999999999999887 544444544432111 1100000 000000000 111223455667788888
Q ss_pred ccEEEEEeCCCCccc
Q 048083 84 ISYLIVVEDVETPQV 98 (692)
Q Consensus 84 k~~LlVLDdv~~~~~ 98 (692)
.+=.|++|.+.+.+.
T Consensus 195 ~pd~i~vgEird~~~ 209 (343)
T TIGR01420 195 DPDVILIGEMRDLET 209 (343)
T ss_pred CCCEEEEeCCCCHHH
Confidence 888999998876554
No 484
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.55 E-value=0.058 Score=49.44 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999876
No 485
>PRK02496 adk adenylate kinase; Provisional
Probab=93.54 E-value=0.062 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999876
No 486
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=93.53 E-value=0.057 Score=54.01 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|.|-||+||||+|..++.-
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~ 25 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAA 25 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Confidence 68899999999999999987776
No 487
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=93.53 E-value=0.12 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|.|..|+|||||++.++..
T Consensus 158 q~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 158 QKLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 57899999999999999999976
No 488
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.53 E-value=0.29 Score=52.13 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=49.7
Q ss_pred eEEEEEcCCCCcHHHHHH-HHHcccchhhcccc-cceEEecCcc-chHHHHHHHHHHhhh-hh-h--hccCCC-hh----
Q 048083 4 QIIAILGERGSGKTTLAR-TVYDRVDVKRHFAK-RAWIRVRGDA-KFRDVLIDILQQIDD-ET-L--VEASAP-EA---- 71 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~-~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-~~-~--~~~~~~-~~---- 71 (692)
+.++|.|-.|+||||||. .+.++. .-+. ++++-+.+.. ...++...+...=.. .. . .....+ ..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~a 238 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIA 238 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHH
Confidence 578999999999999974 777762 3354 5666666553 334444444432111 00 0 000111 00
Q ss_pred -HHHHHHHHHh--ccccEEEEEeCCCC
Q 048083 72 -DLVSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 72 -~~~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
...-.+.+++ +++.+|||+||+-.
T Consensus 239 p~~a~aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 239 PYAATSIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcChhH
Confidence 1122244444 57899999999976
No 489
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.53 E-value=0.061 Score=48.90 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAK 35 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~ 35 (692)
.+|+|-|.+|+|||+|..+.+++ .++.|..
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~--L~~~~~~ 43 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRA--LKDEYKI 43 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHH--HHhhCCe
Confidence 68999999999999999999999 7777753
No 490
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.52 E-value=0.06 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|+.|+||||+|+.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998765
No 491
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.52 E-value=0.058 Score=51.72 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999986
No 492
>PRK13236 nitrogenase reductase; Reviewed
Probab=93.50 E-value=0.081 Score=53.40 Aligned_cols=25 Identities=28% Similarity=0.423 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+++||++.|-||+||||+|..++.-
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~ 29 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAA 29 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHH
Confidence 5799999999999999988887766
No 493
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=93.49 E-value=0.091 Score=52.18 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA 45 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~ 45 (692)
.++|+|.|-||+||||+|..++...... . .+.-++.....
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~~La~~-G--rVLliD~Dpq~ 41 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAAAYSND-H--RVLVIGCDPKA 41 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcccCCC-C--EEEEEeEccCc
Confidence 4789999999999999999999874322 2 35556665443
No 494
>COG4639 Predicted kinase [General function prediction only]
Probab=93.48 E-value=0.13 Score=44.79 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHccc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
..+|++.|.+|.||+|.|+.-+.+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~~ 26 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQN 26 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCCc
Confidence 3678999999999999999976663
No 495
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.47 E-value=0.14 Score=49.41 Aligned_cols=47 Identities=13% Similarity=0.282 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDI 54 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 54 (692)
.++.|.|.+|.||||+|.+++... .+.. ..+++++... +..++.+.+
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 588999999999999998776652 1222 3355665333 344555443
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.47 E-value=0.084 Score=38.49 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 048083 5 IIAILGERGSGKTTLARTVY 24 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~ 24 (692)
+..|+|..|+|||||.-++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999976653
No 497
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=0.01 Score=53.89 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=39.7
Q ss_pred cceEEeeeccCCccccCCCCCCCCccEEEEcccccc---ccccccCccCccceeeeecc-CCCCCchhhhhcCCCCCeee
Q 048083 510 LQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALRM---FSAKTSSFPRNLKIVTLSMS-RLYWDPMEALEKLCHLNILR 585 (692)
Q Consensus 510 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~---~p~~~~~l~~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~ 585 (692)
++.++-+++.+....+.-+..+++++.|.+.+|..- --..+..+.++|+.|+|++| ++++..+..+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 333444443333333344444455555555444310 01112223377777777777 56666666666666766666
Q ss_pred ec
Q 048083 586 II 587 (692)
Q Consensus 586 l~ 587 (692)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 64
No 498
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.47 E-value=0.061 Score=48.88 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|+|.+|+|||||+.++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 499
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.47 E-value=0.073 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
++++++|..|+|||||...+..+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 789999999999999999999983
No 500
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.45 E-value=0.053 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|||.|-+|+||||+|+++...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~ 22 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI 22 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998876
Done!