Query 048083
Match_columns 692
No_of_seqs 335 out of 3843
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 10:18:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-38 5.4E-43 348.9 20.1 269 2-290 151-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 4.7E-31 1.6E-35 321.1 20.3 264 2-288 146-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.7E-31 5.9E-36 295.7 12.9 250 2-281 149-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1E-28 3.5E-33 275.5 18.6 261 2-286 146-450 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 7.1E-27 2.4E-31 262.0 15.7 134 301-447 31-167 (606)
6 4ecn_A Leucine-rich repeat pro 99.9 4.1E-27 1.4E-31 268.1 12.7 340 301-663 447-838 (876)
7 2z63_A TOLL-like receptor 4, v 99.9 1.3E-26 4.3E-31 258.1 15.4 342 301-663 27-529 (570)
8 4eco_A Uncharacterized protein 99.9 5.6E-27 1.9E-31 262.7 12.2 322 320-663 239-598 (636)
9 3rgz_A Protein brassinosteroid 99.9 7.2E-27 2.5E-31 268.0 12.7 293 360-663 340-715 (768)
10 3rgz_A Protein brassinosteroid 99.9 1.2E-26 4E-31 266.3 13.0 339 301-663 199-549 (768)
11 4eco_A Uncharacterized protein 99.9 6.7E-27 2.3E-31 262.1 10.2 325 325-663 202-577 (636)
12 4fmz_A Internalin; leucine ric 99.9 2.1E-26 7E-31 239.3 13.0 302 327-663 42-344 (347)
13 3t6q_A CD180 antigen; protein- 99.9 7.9E-26 2.7E-30 253.5 18.6 297 301-613 32-359 (606)
14 4ecn_A Leucine-rich repeat pro 99.9 2.2E-26 7.4E-31 262.2 12.1 325 325-663 444-817 (876)
15 3v47_A TOLL-like receptor 5B a 99.9 5.8E-25 2E-29 237.4 21.1 344 301-663 29-406 (455)
16 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-25 4.2E-30 246.9 15.3 315 329-663 21-479 (520)
17 3t6q_A CD180 antigen; protein- 99.9 1.8E-25 6.1E-30 250.6 16.0 343 301-663 56-511 (606)
18 3o6n_A APL1; leucine-rich repe 99.9 3.1E-25 1.1E-29 234.2 16.4 303 327-663 43-350 (390)
19 2id5_A Lingo-1, leucine rich r 99.9 6.6E-25 2.3E-29 238.3 19.1 292 328-663 31-331 (477)
20 2z81_A CD282 antigen, TOLL-lik 99.9 6.5E-25 2.2E-29 243.0 17.8 336 302-663 26-508 (549)
21 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-25 4E-30 252.0 11.3 343 300-662 54-555 (606)
22 4fmz_A Internalin; leucine ric 99.9 6.4E-25 2.2E-29 228.0 15.3 280 360-663 41-322 (347)
23 1o6v_A Internalin A; bacterial 99.9 9.4E-25 3.2E-29 236.0 17.2 301 326-663 65-386 (466)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.2E-25 7.5E-30 247.1 11.8 333 305-663 34-508 (562)
25 3oja_B Anopheles plasmodium-re 99.9 7E-25 2.4E-29 244.3 14.2 305 327-663 49-356 (597)
26 3o6n_A APL1; leucine-rich repe 99.9 5.6E-24 1.9E-28 224.5 17.1 282 360-663 42-329 (390)
27 1o6v_A Internalin A; bacterial 99.9 3.2E-24 1.1E-28 231.8 14.5 301 327-663 44-364 (466)
28 1ziw_A TOLL-like receptor 3; i 99.9 8.8E-24 3E-28 240.1 18.4 269 301-587 24-304 (680)
29 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-23 6.3E-28 242.3 19.4 340 300-663 22-437 (844)
30 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-23 3.7E-28 225.8 16.1 294 327-663 40-350 (457)
31 3v47_A TOLL-like receptor 5B a 99.9 4.7E-24 1.6E-28 230.3 10.9 320 328-663 29-382 (455)
32 2id5_A Lingo-1, leucine rich r 99.9 9.2E-24 3.2E-28 229.3 13.3 294 300-615 30-331 (477)
33 2z63_A TOLL-like receptor 4, v 99.9 7.2E-24 2.5E-28 235.8 12.7 138 317-470 19-160 (570)
34 2z81_A CD282 antigen, TOLL-lik 99.9 1E-23 3.5E-28 233.4 13.5 324 318-663 18-421 (549)
35 2z7x_B TOLL-like receptor 1, v 99.9 2.7E-23 9.2E-28 228.3 16.7 290 363-663 21-455 (520)
36 3oja_B Anopheles plasmodium-re 99.9 3.4E-23 1.2E-27 230.7 17.4 281 361-663 49-335 (597)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.8E-23 2.7E-27 226.5 19.1 312 328-663 30-484 (562)
38 1ziw_A TOLL-like receptor 3; i 99.9 6.5E-23 2.2E-27 233.0 16.6 274 301-592 48-366 (680)
39 3bz5_A Internalin-J, INLJ; leu 99.9 5.6E-23 1.9E-27 220.3 13.8 271 360-663 39-329 (457)
40 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-22 3.9E-27 235.6 15.5 322 316-663 15-392 (844)
41 2ft3_A Biglycan; proteoglycan, 99.9 8.8E-23 3E-27 210.3 12.6 283 364-663 34-331 (332)
42 1xku_A Decorin; proteoglycan, 99.9 2.1E-22 7.3E-27 207.3 14.6 279 364-662 32-329 (330)
43 4fcg_A Uncharacterized protein 99.9 1.3E-22 4.5E-27 208.0 12.0 223 360-612 78-309 (328)
44 4fcg_A Uncharacterized protein 99.9 7.9E-22 2.7E-26 202.1 16.7 228 386-661 80-310 (328)
45 2ft3_A Biglycan; proteoglycan, 99.9 5.1E-22 1.8E-26 204.5 13.0 246 360-639 75-331 (332)
46 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-22 4.7E-27 206.6 8.4 223 329-591 50-280 (313)
47 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-21 5.1E-26 220.1 17.2 134 301-447 51-187 (635)
48 1xku_A Decorin; proteoglycan, 99.9 1.6E-21 5.3E-26 200.8 14.0 261 364-638 53-329 (330)
49 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-20 4.2E-25 208.1 17.3 255 362-663 39-295 (622)
50 1jl5_A Outer protein YOPM; leu 99.8 2.2E-20 7.5E-25 200.0 17.8 300 301-663 90-407 (454)
51 1ogq_A PGIP-2, polygalacturona 99.8 2.3E-21 7.9E-26 197.5 8.7 246 363-642 50-305 (313)
52 2z80_A TOLL-like receptor 2, v 99.8 3E-20 1E-24 193.1 14.7 261 367-663 35-312 (353)
53 2z80_A TOLL-like receptor 2, v 99.8 3.5E-20 1.2E-24 192.6 13.6 255 318-593 44-315 (353)
54 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-21 4.2E-26 200.1 2.6 279 349-672 22-309 (317)
55 2z66_A Variable lymphocyte rec 99.8 5.7E-20 1.9E-24 187.0 14.3 193 367-592 11-212 (306)
56 4g8a_A TOLL-like receptor 4; l 99.8 5.9E-20 2E-24 207.0 14.5 370 301-690 75-613 (635)
57 1z7x_W Ribonuclease inhibitor; 99.8 2.4E-22 8.2E-27 217.3 -5.0 327 325-663 24-409 (461)
58 2z66_A Variable lymphocyte rec 99.8 2.7E-20 9.3E-25 189.3 9.2 220 364-614 29-258 (306)
59 3o53_A Protein LRIM1, AGAP0063 99.8 9.1E-21 3.1E-25 193.6 4.5 258 363-663 10-273 (317)
60 1jl5_A Outer protein YOPM; leu 99.8 5E-20 1.7E-24 197.2 9.3 218 366-620 74-292 (454)
61 3g06_A SSPH2 (leucine-rich rep 99.8 4.9E-19 1.7E-23 195.3 14.8 267 303-652 41-309 (622)
62 3zyj_A Leucine-rich repeat-con 99.8 1.2E-18 4.2E-23 186.6 17.3 230 318-591 56-291 (440)
63 3zyi_A Leucine-rich repeat-con 99.8 1.8E-19 6.2E-24 193.7 10.6 223 328-591 74-302 (452)
64 3ogk_B Coronatine-insensitive 99.8 5.2E-20 1.8E-24 205.6 6.0 295 360-663 161-524 (592)
65 3zyi_A Leucine-rich repeat-con 99.8 6.8E-19 2.3E-23 189.3 12.8 221 363-615 75-301 (452)
66 1z7x_W Ribonuclease inhibitor; 99.8 4.7E-21 1.6E-25 207.1 -4.3 319 328-663 2-381 (461)
67 3oja_A Leucine-rich immune mol 99.8 1.5E-19 5.3E-24 195.3 6.2 242 353-637 26-271 (487)
68 1ozn_A Reticulon 4 receptor; N 99.8 2.3E-18 7.7E-23 173.1 14.3 201 363-592 32-238 (285)
69 3zyj_A Leucine-rich repeat-con 99.8 4.3E-18 1.5E-22 182.3 16.9 221 363-615 64-290 (440)
70 1wwl_A Monocyte differentiatio 99.8 2.1E-19 7.3E-24 183.0 5.5 148 509-663 150-307 (312)
71 1wwl_A Monocyte differentiatio 99.8 1.2E-18 4.1E-23 177.4 9.1 220 365-593 65-310 (312)
72 3ogk_B Coronatine-insensitive 99.7 2.4E-19 8.4E-24 200.2 2.7 322 327-662 190-548 (592)
73 3oja_A Leucine-rich immune mol 99.7 1E-17 3.4E-22 181.1 15.1 232 386-660 33-270 (487)
74 1ozn_A Reticulon 4 receptor; N 99.7 1.9E-18 6.4E-23 173.7 6.9 202 328-569 31-239 (285)
75 2p1m_B Transport inhibitor res 99.7 3.3E-19 1.1E-23 199.3 1.0 324 327-664 128-518 (594)
76 2z62_A TOLL-like receptor 4, v 99.7 2.5E-17 8.5E-22 164.6 12.9 199 364-592 29-237 (276)
77 1h6u_A Internalin H; cell adhe 99.7 8.4E-17 2.9E-21 163.2 15.2 193 360-593 38-231 (308)
78 2xwt_C Thyrotropin receptor; s 99.7 4.1E-17 1.4E-21 159.2 11.9 197 364-615 32-237 (239)
79 2p1m_B Transport inhibitor res 99.7 5.9E-19 2E-23 197.1 -3.8 323 326-664 102-493 (594)
80 2o6q_A Variable lymphocyte rec 99.7 4.2E-16 1.4E-20 155.0 16.5 194 365-591 18-217 (270)
81 2ast_B S-phase kinase-associat 99.7 1.1E-17 3.6E-22 172.7 5.0 198 363-565 70-282 (336)
82 3rfs_A Internalin B, repeat mo 99.7 3E-17 1E-21 163.5 8.0 177 383-591 37-217 (272)
83 1h6u_A Internalin H; cell adhe 99.7 7E-17 2.4E-21 163.8 10.6 209 363-615 19-228 (308)
84 2ast_B S-phase kinase-associat 99.7 5.2E-18 1.8E-22 175.0 2.2 222 362-614 46-282 (336)
85 2z62_A TOLL-like receptor 4, v 99.7 3.7E-16 1.3E-20 156.1 15.7 214 368-639 12-235 (276)
86 1p9a_G Platelet glycoprotein I 99.7 1.4E-16 4.7E-21 160.0 10.6 197 360-591 7-207 (290)
87 4glp_A Monocyte differentiatio 99.7 5E-16 1.7E-20 157.9 13.0 203 361-593 89-308 (310)
88 1p9a_G Platelet glycoprotein I 99.6 1.3E-15 4.3E-20 152.9 15.4 198 383-615 6-206 (290)
89 3rfs_A Internalin B, repeat mo 99.6 3.5E-16 1.2E-20 155.8 8.9 85 360-446 60-146 (272)
90 2o6q_A Variable lymphocyte rec 99.6 2.9E-15 9.8E-20 149.0 15.3 195 387-614 16-215 (270)
91 2xwt_C Thyrotropin receptor; s 99.6 1.8E-15 6.2E-20 147.5 13.4 99 559-663 134-237 (239)
92 2ca6_A RAN GTPase-activating p 99.6 5.4E-17 1.8E-21 170.7 2.1 244 354-615 25-314 (386)
93 2ca6_A RAN GTPase-activating p 99.6 4.5E-17 1.5E-21 171.3 0.2 274 364-662 10-340 (386)
94 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.6E-19 149.9 14.7 105 527-637 148-255 (350)
95 3m19_A Variable lymphocyte rec 99.6 2.4E-14 8.3E-19 140.6 14.9 175 363-592 14-192 (251)
96 3goz_A Leucine-rich repeat-con 99.6 6.9E-16 2.4E-20 160.5 3.4 240 352-615 13-295 (362)
97 1m9s_A Internalin B; cell inva 99.6 5.8E-16 2E-20 170.6 3.0 191 361-568 19-210 (605)
98 1h6t_A Internalin B; cell adhe 99.6 7.4E-16 2.5E-20 154.8 2.8 171 384-593 43-214 (291)
99 4ay9_X Follicle-stimulating ho 99.5 2.2E-14 7.5E-19 148.3 13.3 236 366-661 12-255 (350)
100 3goz_A Leucine-rich repeat-con 99.5 1.8E-15 6E-20 157.4 4.6 115 326-446 19-151 (362)
101 3cvr_A Invasion plasmid antige 99.5 7.3E-15 2.5E-19 160.0 7.9 178 363-593 59-244 (571)
102 1h6t_A Internalin B; cell adhe 99.5 1.9E-14 6.4E-19 144.5 6.6 188 386-615 23-211 (291)
103 1m9s_A Internalin B; cell inva 99.5 2E-14 6.9E-19 158.3 6.2 192 386-594 20-212 (605)
104 4glp_A Monocyte differentiatio 99.5 5.4E-14 1.8E-18 142.8 8.8 204 302-543 91-305 (310)
105 1xeu_A Internalin C; cellular 99.4 3.1E-14 1.1E-18 140.6 4.3 168 360-543 16-183 (263)
106 3m19_A Variable lymphocyte rec 99.4 3.1E-13 1.1E-17 132.6 11.3 159 318-492 27-189 (251)
107 1xeu_A Internalin C; cellular 99.4 1.9E-13 6.6E-18 134.8 8.5 170 385-594 17-187 (263)
108 3cvr_A Invasion plasmid antige 99.4 4.7E-13 1.6E-17 145.7 11.1 177 388-618 60-244 (571)
109 2xot_A Amphoterin-induced prot 99.4 1.1E-12 3.6E-17 136.2 12.2 81 366-449 21-104 (361)
110 4ezg_A Putative uncharacterize 99.4 7.5E-13 2.6E-17 124.6 9.9 147 509-663 45-192 (197)
111 2o6s_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 123.8 11.9 65 509-579 125-189 (208)
112 4ezg_A Putative uncharacterize 99.4 2.8E-13 9.7E-18 127.5 5.8 104 327-444 42-147 (197)
113 1dce_A Protein (RAB geranylger 99.4 2.4E-14 8.2E-19 156.8 -2.4 211 407-658 346-566 (567)
114 2o6s_A Variable lymphocyte rec 99.4 6.1E-13 2.1E-17 126.5 7.7 87 360-446 49-137 (208)
115 3e6j_A Variable lymphocyte rec 99.3 6.3E-12 2.2E-16 121.2 13.6 76 367-445 23-100 (229)
116 1dce_A Protein (RAB geranylger 99.3 2E-14 6.8E-19 157.4 -4.9 196 384-610 346-566 (567)
117 2v9t_B SLIT homolog 2 protein 99.3 5.2E-12 1.8E-16 120.9 12.2 81 366-449 14-96 (220)
118 2ell_A Acidic leucine-rich nuc 99.3 2.4E-12 8.3E-17 117.7 8.3 106 360-470 21-131 (168)
119 2v9t_B SLIT homolog 2 protein 99.3 1E-11 3.4E-16 118.9 12.8 148 389-591 13-164 (220)
120 2v70_A SLIT-2, SLIT homolog 2 99.3 9.2E-12 3.1E-16 119.2 12.1 148 366-568 14-166 (220)
121 2v70_A SLIT-2, SLIT homolog 2 99.3 8.4E-12 2.9E-16 119.4 11.7 82 509-591 82-165 (220)
122 3e6j_A Variable lymphocyte rec 99.3 5.4E-12 1.8E-16 121.7 10.1 136 318-469 32-169 (229)
123 2je0_A Acidic leucine-rich nuc 99.3 2.2E-12 7.4E-17 115.4 6.7 126 360-490 14-148 (149)
124 2ell_A Acidic leucine-rich nuc 99.3 2.9E-12 9.9E-17 117.1 5.9 123 328-461 23-152 (168)
125 1a9n_A U2A', U2A'; complex (nu 99.3 7E-12 2.4E-16 115.5 8.2 127 360-492 16-150 (176)
126 4b8c_D Glucose-repressible alc 99.2 1E-12 3.5E-17 148.5 2.0 114 352-471 215-328 (727)
127 3sb4_A Hypothetical leucine ri 99.2 1E-11 3.5E-16 127.0 9.2 103 328-448 24-139 (329)
128 4b8c_D Glucose-repressible alc 99.2 5.7E-12 1.9E-16 142.5 6.9 160 370-542 208-369 (727)
129 2xot_A Amphoterin-induced prot 99.2 1.2E-11 4.1E-16 128.2 8.4 162 318-492 31-199 (361)
130 2je0_A Acidic leucine-rich nuc 99.2 4E-12 1.4E-16 113.6 3.9 124 327-461 15-145 (149)
131 1w5s_A Origin recognition comp 99.2 9.6E-11 3.3E-15 124.0 14.3 245 4-261 51-372 (412)
132 1a9n_A U2A', U2A'; complex (nu 99.2 8.8E-12 3E-16 114.8 4.8 122 327-461 17-145 (176)
133 2qen_A Walker-type ATPase; unk 99.1 3.1E-10 1E-14 117.2 13.6 248 4-282 32-349 (350)
134 1w8a_A SLIT protein; signaling 99.1 1.3E-10 4.5E-15 108.5 9.0 121 366-492 11-136 (192)
135 2wfh_A SLIT homolog 2 protein 99.1 2.8E-10 9.5E-15 106.3 9.6 87 363-450 31-119 (193)
136 2wfh_A SLIT homolog 2 protein 99.0 3.3E-10 1.1E-14 105.8 8.5 115 318-446 23-139 (193)
137 2fna_A Conserved hypothetical 99.0 1.4E-09 4.6E-14 112.6 13.9 245 4-281 31-356 (357)
138 1ds9_A Outer arm dynein; leuci 99.0 3.9E-12 1.3E-16 119.7 -5.3 84 360-446 45-128 (198)
139 2o6r_A Variable lymphocyte rec 99.0 6E-10 2E-14 102.6 8.6 108 329-446 28-137 (177)
140 1ds9_A Outer arm dynein; leuci 99.0 2.9E-11 9.8E-16 113.7 -0.4 127 360-492 15-150 (198)
141 2qby_B CDC6 homolog 3, cell di 99.0 3.3E-09 1.1E-13 111.0 14.6 247 3-262 45-341 (384)
142 1w8a_A SLIT protein; signaling 99.0 7.4E-10 2.5E-14 103.4 8.4 87 360-446 51-139 (192)
143 2r9u_A Variable lymphocyte rec 98.9 9.9E-10 3.4E-14 100.6 6.0 90 363-452 33-124 (174)
144 2r9u_A Variable lymphocyte rec 98.9 2E-09 7E-14 98.4 8.1 99 366-470 15-116 (174)
145 2o6r_A Variable lymphocyte rec 98.9 4.2E-09 1.5E-13 96.8 9.9 88 363-450 28-117 (177)
146 3sb4_A Hypothetical leucine ri 98.9 4.1E-09 1.4E-13 107.6 10.1 102 506-610 224-327 (329)
147 4fdw_A Leucine rich hypothetic 98.9 1.2E-08 4.1E-13 106.5 12.7 239 354-612 129-378 (401)
148 2v1u_A Cell division control p 98.8 2.7E-08 9.2E-13 104.1 14.7 245 4-261 45-352 (387)
149 3g39_A Variable lymphocyte rec 98.8 5.6E-09 1.9E-13 95.2 8.3 81 366-449 12-94 (170)
150 4fdw_A Leucine rich hypothetic 98.8 1.2E-08 4E-13 106.6 11.5 234 360-614 110-355 (401)
151 1fnn_A CDC6P, cell division co 98.8 3.5E-08 1.2E-12 103.3 14.8 268 4-284 45-383 (389)
152 3g39_A Variable lymphocyte rec 98.8 6.1E-09 2.1E-13 94.9 7.6 88 362-449 29-118 (170)
153 2qby_A CDC6 homolog 1, cell di 98.7 2.2E-08 7.5E-13 104.7 10.3 245 4-261 46-349 (386)
154 4fs7_A Uncharacterized protein 98.6 3.6E-07 1.2E-11 95.7 15.3 307 319-661 61-375 (394)
155 2ifg_A High affinity nerve gro 98.5 9.8E-08 3.3E-12 98.2 6.6 91 353-446 24-116 (347)
156 3un9_A NLR family member X1; l 98.5 2.2E-08 7.7E-13 103.4 0.2 83 363-445 101-195 (372)
157 2ifg_A High affinity nerve gro 98.4 4.3E-07 1.5E-11 93.3 9.5 98 367-469 12-113 (347)
158 2ra8_A Uncharacterized protein 98.4 6.5E-08 2.2E-12 99.1 3.1 140 528-672 168-329 (362)
159 3un9_A NLR family member X1; l 98.4 2.3E-08 8E-13 103.3 -0.5 62 362-423 71-139 (372)
160 1njg_A DNA polymerase III subu 98.3 2.8E-07 9.6E-12 89.4 4.9 52 114-176 179-230 (250)
161 4fs7_A Uncharacterized protein 98.3 1.9E-06 6.6E-11 90.0 11.4 320 299-657 68-393 (394)
162 3e4g_A ATP synthase subunit S, 98.2 2.6E-07 8.8E-12 82.9 1.3 87 555-642 61-153 (176)
163 2chg_A Replication factor C sm 98.2 4.3E-06 1.5E-10 79.6 9.8 139 5-173 40-203 (226)
164 2ra8_A Uncharacterized protein 98.2 2.2E-06 7.5E-11 87.7 6.9 80 360-442 136-228 (362)
165 4gt6_A Cell surface protein; l 98.1 1E-05 3.5E-10 84.5 10.8 103 506-613 263-366 (394)
166 3e4g_A ATP synthase subunit S, 98.1 2.7E-06 9.1E-11 76.3 4.4 81 509-589 62-149 (176)
167 4gt6_A Cell surface protein; l 98.0 2.9E-05 1E-09 81.0 12.6 293 320-638 54-367 (394)
168 1sxj_B Activator 1 37 kDa subu 98.0 1.5E-05 5.1E-10 80.7 9.0 142 5-176 44-212 (323)
169 1hqc_A RUVB; extended AAA-ATPa 98.0 3.3E-05 1.1E-09 78.2 11.0 232 4-260 39-298 (324)
170 1io0_A Tropomodulin; LRR prote 97.9 6E-06 2.1E-10 76.0 3.8 112 327-445 34-163 (185)
171 3te6_A Regulatory protein SIR3 97.8 4.4E-05 1.5E-09 75.8 8.2 89 4-96 46-144 (318)
172 1io0_A Tropomodulin; LRR prote 97.7 1.1E-05 3.8E-10 74.2 2.4 94 350-446 25-136 (185)
173 3rw6_A Nuclear RNA export fact 97.7 3.5E-05 1.2E-09 74.6 5.4 79 360-439 167-257 (267)
174 4h09_A Hypothetical leucine ri 97.6 0.00025 8.7E-09 73.4 10.6 77 509-587 241-318 (379)
175 1jbk_A CLPB protein; beta barr 97.5 0.00011 3.9E-09 67.6 5.9 23 4-26 44-66 (195)
176 2w58_A DNAI, primosome compone 97.5 0.00011 3.8E-09 68.5 5.8 36 4-41 55-90 (202)
177 1iqp_A RFCS; clamp loader, ext 97.4 0.0002 6.9E-09 72.4 7.8 140 4-173 47-211 (327)
178 3ec2_A DNA replication protein 97.4 0.00022 7.5E-09 65.1 7.0 23 4-26 39-61 (180)
179 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00027 9.2E-09 69.4 6.7 69 4-96 124-194 (331)
180 3rw6_A Nuclear RNA export fact 97.2 0.00021 7.1E-09 69.1 4.6 62 384-446 167-233 (267)
181 4h09_A Hypothetical leucine ri 97.2 0.0011 3.9E-08 68.4 10.6 285 325-635 42-340 (379)
182 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00041 1.4E-08 67.6 6.5 23 4-26 40-62 (262)
183 1jr3_A DNA polymerase III subu 97.2 0.00057 1.9E-08 70.5 7.3 50 114-174 172-221 (373)
184 2z4s_A Chromosomal replication 97.1 0.00087 3E-08 70.5 8.1 35 4-40 131-165 (440)
185 3pfi_A Holliday junction ATP-d 97.1 0.0036 1.2E-07 63.4 12.2 128 113-261 177-314 (338)
186 3pvs_A Replication-associated 97.0 0.0033 1.1E-07 66.0 11.8 139 4-171 51-212 (447)
187 2chq_A Replication factor C sm 97.0 0.0011 3.8E-08 66.6 8.0 134 5-171 40-201 (319)
188 1d2n_A N-ethylmaleimide-sensit 97.0 0.0015 5.3E-08 63.9 8.7 23 4-26 65-87 (272)
189 2p65_A Hypothetical protein PF 97.0 0.00039 1.3E-08 63.6 3.9 23 4-26 44-66 (187)
190 2kjq_A DNAA-related protein; s 97.0 0.00051 1.7E-08 60.3 4.4 24 4-27 37-60 (149)
191 2cvh_A DNA repair and recombin 97.0 0.0017 5.8E-08 61.2 8.4 86 4-95 21-116 (220)
192 3hr8_A Protein RECA; alpha and 96.9 0.0025 8.6E-08 64.2 8.9 85 4-95 62-150 (356)
193 1sxj_A Activator 1 95 kDa subu 96.9 0.00094 3.2E-08 71.9 5.9 149 4-175 78-254 (516)
194 3bos_A Putative DNA replicatio 96.8 0.00072 2.5E-08 64.8 4.4 38 3-42 52-89 (242)
195 3t15_A Ribulose bisphosphate c 96.8 0.001 3.6E-08 65.8 5.4 23 4-26 37-59 (293)
196 2zan_A Vacuolar protein sortin 96.8 0.0096 3.3E-07 62.6 13.0 23 4-26 168-190 (444)
197 3h4m_A Proteasome-activating n 96.8 0.00059 2E-08 67.4 3.2 23 4-26 52-74 (285)
198 4b4t_J 26S protease regulatory 96.7 0.0057 2E-07 62.3 10.0 22 5-26 184-205 (405)
199 3cf0_A Transitional endoplasmi 96.6 0.0033 1.1E-07 62.5 7.4 70 4-95 50-119 (301)
200 1u94_A RECA protein, recombina 96.6 0.0045 1.5E-07 62.6 8.3 84 4-94 64-151 (356)
201 1xp8_A RECA protein, recombina 96.6 0.0057 1.9E-07 62.1 8.9 85 4-95 75-163 (366)
202 1l8q_A Chromosomal replication 96.6 0.0023 7.9E-08 64.4 6.0 23 4-26 38-60 (324)
203 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0023 8E-08 64.2 5.9 23 4-26 46-68 (322)
204 3vfd_A Spastin; ATPase, microt 96.5 0.011 3.8E-07 61.1 10.6 23 4-26 149-171 (389)
205 4b4t_H 26S protease regulatory 96.5 0.0078 2.7E-07 62.2 9.1 23 4-26 244-266 (467)
206 1a5t_A Delta prime, HOLB; zinc 96.4 0.01 3.4E-07 60.0 9.7 44 114-173 161-204 (334)
207 1sxj_D Activator 1 41 kDa subu 96.4 0.0055 1.9E-07 62.5 7.8 48 114-172 186-233 (353)
208 3n70_A Transport activator; si 96.4 0.0022 7.5E-08 55.9 4.1 22 5-26 26-47 (145)
209 1n0w_A DNA repair protein RAD5 96.4 0.0053 1.8E-07 58.7 7.1 91 4-95 25-130 (243)
210 2b8t_A Thymidine kinase; deoxy 96.4 0.0012 4.1E-08 61.9 2.3 86 4-94 13-99 (223)
211 3eie_A Vacuolar protein sortin 96.4 0.0037 1.3E-07 62.8 6.1 23 4-26 52-74 (322)
212 2zr9_A Protein RECA, recombina 96.4 0.0081 2.8E-07 60.7 8.6 85 4-95 62-150 (349)
213 3io5_A Recombination and repai 96.3 0.011 3.7E-07 57.8 8.7 85 5-96 30-123 (333)
214 1lv7_A FTSH; alpha/beta domain 96.3 0.0028 9.5E-08 61.4 4.5 22 5-26 47-68 (257)
215 2qgz_A Helicase loader, putati 96.3 0.0024 8.2E-08 63.6 4.1 36 4-41 153-189 (308)
216 2z43_A DNA repair and recombin 96.2 0.012 4.2E-07 58.9 9.0 90 4-94 108-213 (324)
217 1qhx_A CPT, protein (chloramph 96.2 0.0021 7.2E-08 58.2 3.0 23 4-26 4-26 (178)
218 3b9p_A CG5977-PA, isoform A; A 96.2 0.0029 9.8E-08 62.8 4.3 23 4-26 55-77 (297)
219 2qp9_X Vacuolar protein sortin 96.2 0.0026 8.8E-08 64.9 3.9 22 5-26 86-107 (355)
220 3syl_A Protein CBBX; photosynt 96.2 0.0049 1.7E-07 61.5 6.0 22 5-26 69-90 (309)
221 3kb2_A SPBC2 prophage-derived 96.2 0.0023 7.8E-08 57.6 3.0 23 4-26 2-24 (173)
222 1sxj_E Activator 1 40 kDa subu 96.2 0.011 3.7E-07 60.3 8.3 21 6-26 39-59 (354)
223 2x8a_A Nuclear valosin-contain 96.1 0.01 3.5E-07 57.8 7.6 21 6-26 47-67 (274)
224 1v5w_A DMC1, meiotic recombina 96.1 0.016 5.5E-07 58.6 8.9 91 4-95 123-230 (343)
225 2px0_A Flagellar biosynthesis 96.0 0.0097 3.3E-07 58.7 7.0 23 4-26 106-128 (296)
226 1zuh_A Shikimate kinase; alpha 96.0 0.0032 1.1E-07 56.5 3.0 25 2-26 6-30 (168)
227 2i1q_A DNA repair and recombin 96.0 0.019 6.4E-07 57.6 8.9 90 4-94 99-214 (322)
228 3lw7_A Adenylate kinase relate 96.0 0.0035 1.2E-07 56.6 3.2 20 4-23 2-21 (179)
229 1vma_A Cell division protein F 96.0 0.017 5.6E-07 57.1 8.2 89 3-93 104-195 (306)
230 1ixz_A ATP-dependent metallopr 95.9 0.01 3.6E-07 57.2 6.7 21 6-26 52-72 (254)
231 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.021 7.2E-07 54.0 8.8 37 4-42 24-60 (235)
232 1zp6_A Hypothetical protein AT 95.9 0.004 1.4E-07 57.1 3.4 23 4-26 10-32 (191)
233 3vaa_A Shikimate kinase, SK; s 95.9 0.0035 1.2E-07 58.0 3.0 24 3-26 25-48 (199)
234 1j8m_F SRP54, signal recogniti 95.9 0.017 6E-07 56.8 8.1 38 3-42 98-135 (297)
235 1ly1_A Polynucleotide kinase; 95.9 0.0044 1.5E-07 56.2 3.4 22 4-25 3-24 (181)
236 4b4t_L 26S protease subunit RP 95.8 0.0047 1.6E-07 64.0 3.8 23 4-26 216-238 (437)
237 3trf_A Shikimate kinase, SK; a 95.8 0.0042 1.4E-07 56.7 3.0 24 3-26 5-28 (185)
238 1iy2_A ATP-dependent metallopr 95.8 0.011 3.6E-07 58.0 6.1 21 6-26 76-96 (278)
239 3ice_A Transcription terminati 95.8 0.015 5.3E-07 58.3 7.2 87 4-95 175-272 (422)
240 1sky_E F1-ATPase, F1-ATP synth 95.8 0.038 1.3E-06 57.3 10.4 39 4-44 152-191 (473)
241 4fcw_A Chaperone protein CLPB; 95.8 0.0099 3.4E-07 59.3 6.0 23 4-26 48-70 (311)
242 1kag_A SKI, shikimate kinase I 95.8 0.0038 1.3E-07 56.2 2.6 23 4-26 5-27 (173)
243 3uk6_A RUVB-like 2; hexameric 95.8 0.0057 2E-07 62.8 4.2 23 4-26 71-93 (368)
244 4b4t_K 26S protease regulatory 95.8 0.0044 1.5E-07 64.1 3.2 23 4-26 207-229 (428)
245 1kgd_A CASK, peripheral plasma 95.7 0.0049 1.7E-07 55.9 3.2 23 4-26 6-28 (180)
246 4b4t_M 26S protease regulatory 95.7 0.0042 1.4E-07 64.3 3.0 23 4-26 216-238 (434)
247 2r62_A Cell division protease 95.7 0.0014 4.9E-08 63.9 -0.6 21 6-26 47-67 (268)
248 3d8b_A Fidgetin-like protein 1 95.7 0.0041 1.4E-07 63.5 2.8 23 4-26 118-140 (357)
249 1nks_A Adenylate kinase; therm 95.7 0.0053 1.8E-07 56.3 3.2 23 4-26 2-24 (194)
250 3t61_A Gluconokinase; PSI-biol 95.7 0.0041 1.4E-07 57.6 2.4 23 4-26 19-41 (202)
251 3fwy_A Light-independent proto 95.6 0.0063 2.1E-07 60.5 3.7 40 2-43 47-86 (314)
252 2ze6_A Isopentenyl transferase 95.6 0.0058 2E-07 58.9 3.3 23 4-26 2-24 (253)
253 1knq_A Gluconate kinase; ALFA/ 95.6 0.0064 2.2E-07 54.8 3.4 23 4-26 9-31 (175)
254 3uie_A Adenylyl-sulfate kinase 95.6 0.0064 2.2E-07 56.3 3.4 23 4-26 26-48 (200)
255 3bh0_A DNAB-like replicative h 95.6 0.028 9.5E-07 56.1 8.2 50 4-57 69-118 (315)
256 2dhr_A FTSH; AAA+ protein, hex 95.6 0.018 6.3E-07 60.9 7.2 21 6-26 67-87 (499)
257 4eun_A Thermoresistant glucoki 95.6 0.0063 2.1E-07 56.3 3.2 23 4-26 30-52 (200)
258 3iij_A Coilin-interacting nucl 95.5 0.0051 1.8E-07 55.8 2.5 23 4-26 12-34 (180)
259 1via_A Shikimate kinase; struc 95.5 0.0052 1.8E-07 55.4 2.4 23 4-26 5-27 (175)
260 3sr0_A Adenylate kinase; phosp 95.5 0.034 1.2E-06 51.4 7.9 22 5-26 2-23 (206)
261 1kht_A Adenylate kinase; phosp 95.5 0.0064 2.2E-07 55.7 3.0 23 4-26 4-26 (192)
262 2if2_A Dephospho-COA kinase; a 95.5 0.0067 2.3E-07 56.3 3.2 22 4-25 2-23 (204)
263 3a00_A Guanylate kinase, GMP k 95.5 0.008 2.7E-07 54.8 3.6 23 4-26 2-24 (186)
264 1y63_A LMAJ004144AAA protein; 95.5 0.0067 2.3E-07 55.2 3.0 23 4-26 11-33 (184)
265 4a1f_A DNAB helicase, replicat 95.5 0.041 1.4E-06 54.9 8.9 50 4-57 47-96 (338)
266 4b4t_I 26S protease regulatory 95.5 0.0064 2.2E-07 62.2 3.1 23 4-26 217-239 (437)
267 1ukz_A Uridylate kinase; trans 95.5 0.008 2.7E-07 55.7 3.6 25 2-26 14-38 (203)
268 1ex7_A Guanylate kinase; subst 95.5 0.0061 2.1E-07 55.3 2.6 23 4-26 2-24 (186)
269 2bdt_A BH3686; alpha-beta prot 95.5 0.008 2.7E-07 55.0 3.5 22 4-25 3-24 (189)
270 3u61_B DNA polymerase accessor 95.5 0.018 6.3E-07 57.7 6.5 23 4-26 49-71 (324)
271 2ce7_A Cell division protein F 95.4 0.0069 2.3E-07 63.7 3.3 22 5-26 51-72 (476)
272 2rhm_A Putative kinase; P-loop 95.4 0.0072 2.5E-07 55.4 3.2 23 4-26 6-28 (193)
273 3lda_A DNA repair protein RAD5 95.4 0.043 1.5E-06 56.3 9.2 55 4-59 179-237 (400)
274 3c8u_A Fructokinase; YP_612366 95.4 0.0076 2.6E-07 56.2 3.2 24 3-26 22-45 (208)
275 4gp7_A Metallophosphoesterase; 95.4 0.0075 2.6E-07 54.1 3.0 22 4-25 10-31 (171)
276 2ffh_A Protein (FFH); SRP54, s 95.4 0.039 1.3E-06 56.9 8.7 37 4-42 99-135 (425)
277 2qor_A Guanylate kinase; phosp 95.4 0.0061 2.1E-07 56.6 2.4 23 4-26 13-35 (204)
278 2grj_A Dephospho-COA kinase; T 95.4 0.0084 2.9E-07 54.8 3.3 24 3-26 12-35 (192)
279 3cf2_A TER ATPase, transitiona 95.4 0.017 5.8E-07 64.5 6.3 23 4-26 239-261 (806)
280 2iyv_A Shikimate kinase, SK; t 95.4 0.0059 2E-07 55.6 2.2 23 4-26 3-25 (184)
281 3tr0_A Guanylate kinase, GMP k 95.4 0.0083 2.8E-07 55.6 3.3 23 4-26 8-30 (205)
282 2plr_A DTMP kinase, probable t 95.3 0.015 5.2E-07 54.2 5.1 23 4-26 5-27 (213)
283 3tau_A Guanylate kinase, GMP k 95.3 0.0085 2.9E-07 55.8 3.2 23 4-26 9-31 (208)
284 1tev_A UMP-CMP kinase; ploop, 95.3 0.0086 2.9E-07 55.0 3.2 23 4-26 4-26 (196)
285 2qt1_A Nicotinamide riboside k 95.3 0.011 3.6E-07 55.1 3.8 24 3-26 21-44 (207)
286 2xxa_A Signal recognition part 95.3 0.038 1.3E-06 57.5 8.3 38 3-42 100-138 (433)
287 1uf9_A TT1252 protein; P-loop, 95.3 0.01 3.5E-07 54.9 3.7 25 2-26 7-31 (203)
288 2yvu_A Probable adenylyl-sulfa 95.3 0.012 4.1E-07 53.6 4.1 23 4-26 14-36 (186)
289 1jjv_A Dephospho-COA kinase; P 95.3 0.0099 3.4E-07 55.2 3.6 22 4-25 3-24 (206)
290 3hu3_A Transitional endoplasmi 95.3 0.021 7.1E-07 60.6 6.4 22 5-26 240-261 (489)
291 1e6c_A Shikimate kinase; phosp 95.3 0.0072 2.4E-07 54.3 2.4 23 4-26 3-25 (173)
292 2c95_A Adenylate kinase 1; tra 95.2 0.0095 3.2E-07 54.8 3.3 24 3-26 9-32 (196)
293 2jaq_A Deoxyguanosine kinase; 95.2 0.0093 3.2E-07 55.2 3.2 22 5-26 2-23 (205)
294 2bwj_A Adenylate kinase 5; pho 95.2 0.0086 2.9E-07 55.2 2.9 23 4-26 13-35 (199)
295 1xjc_A MOBB protein homolog; s 95.2 0.013 4.6E-07 51.9 4.0 25 2-26 3-27 (169)
296 3cm0_A Adenylate kinase; ATP-b 95.2 0.0097 3.3E-07 54.2 3.2 23 4-26 5-27 (186)
297 2j41_A Guanylate kinase; GMP, 95.2 0.0094 3.2E-07 55.3 3.2 23 4-26 7-29 (207)
298 1ye8_A Protein THEP1, hypothet 95.2 0.01 3.6E-07 53.5 3.3 23 5-27 2-24 (178)
299 3ney_A 55 kDa erythrocyte memb 95.2 0.011 3.7E-07 54.0 3.4 23 4-26 20-42 (197)
300 3a4m_A L-seryl-tRNA(SEC) kinas 95.2 0.011 3.7E-07 57.2 3.6 24 3-26 4-27 (260)
301 1ls1_A Signal recognition part 95.1 0.057 1.9E-06 53.1 8.7 37 4-42 99-135 (295)
302 3asz_A Uridine kinase; cytidin 95.1 0.011 3.9E-07 55.1 3.4 23 4-26 7-29 (211)
303 1qf9_A UMP/CMP kinase, protein 95.1 0.01 3.6E-07 54.3 3.2 23 4-26 7-29 (194)
304 2vli_A Antibiotic resistance p 95.1 0.0074 2.5E-07 54.8 2.1 23 4-26 6-28 (183)
305 1cke_A CK, MSSA, protein (cyti 95.1 0.011 3.6E-07 56.0 3.2 23 4-26 6-28 (227)
306 2pt5_A Shikimate kinase, SK; a 95.1 0.011 3.8E-07 52.7 3.2 22 5-26 2-23 (168)
307 2c9o_A RUVB-like 1; hexameric 95.0 0.015 5.2E-07 61.4 4.5 23 4-26 64-86 (456)
308 1pzn_A RAD51, DNA repair and r 95.0 0.041 1.4E-06 55.6 7.4 42 4-45 132-177 (349)
309 2cdn_A Adenylate kinase; phosp 95.0 0.011 3.9E-07 54.6 3.0 23 4-26 21-43 (201)
310 1lvg_A Guanylate kinase, GMP k 94.9 0.01 3.6E-07 54.7 2.6 23 4-26 5-27 (198)
311 1uj2_A Uridine-cytidine kinase 94.9 0.014 4.9E-07 56.1 3.6 24 3-26 22-45 (252)
312 2bbw_A Adenylate kinase 4, AK4 94.9 0.013 4.4E-07 56.2 3.3 23 4-26 28-50 (246)
313 2pbr_A DTMP kinase, thymidylat 94.9 0.013 4.5E-07 53.7 3.2 22 5-26 2-23 (195)
314 3rfe_A Platelet glycoprotein I 94.9 0.032 1.1E-06 47.2 5.2 53 391-445 12-67 (130)
315 3e70_C DPA, signal recognition 94.8 0.059 2E-06 53.7 8.0 23 4-26 130-152 (328)
316 3m6a_A ATP-dependent protease 94.8 0.021 7E-07 61.7 4.9 23 4-26 109-131 (543)
317 1zd8_A GTP:AMP phosphotransfer 94.8 0.013 4.5E-07 55.4 3.0 23 4-26 8-30 (227)
318 1rz3_A Hypothetical protein rb 94.8 0.016 5.6E-07 53.5 3.6 24 3-26 22-45 (201)
319 1znw_A Guanylate kinase, GMP k 94.8 0.015 5E-07 54.1 3.3 23 4-26 21-43 (207)
320 1htw_A HI0065; nucleotide-bind 94.8 0.017 5.9E-07 50.8 3.5 23 4-26 34-56 (158)
321 1nn5_A Similar to deoxythymidy 94.8 0.016 5.5E-07 54.1 3.6 23 4-26 10-32 (215)
322 4a74_A DNA repair and recombin 94.8 0.033 1.1E-06 52.6 5.8 40 4-43 26-69 (231)
323 2wwf_A Thymidilate kinase, put 94.8 0.013 4.5E-07 54.6 3.0 23 4-26 11-33 (212)
324 1odf_A YGR205W, hypothetical 3 94.8 0.017 5.8E-07 56.7 3.8 24 3-26 31-54 (290)
325 1sxj_C Activator 1 40 kDa subu 94.8 0.034 1.2E-06 56.2 6.2 21 6-26 49-69 (340)
326 3fb4_A Adenylate kinase; psych 94.7 0.015 5E-07 54.5 3.1 22 5-26 2-23 (216)
327 3umf_A Adenylate kinase; rossm 94.7 0.018 6.3E-07 53.5 3.6 25 2-26 28-52 (217)
328 3zvl_A Bifunctional polynucleo 94.7 0.056 1.9E-06 56.2 7.7 24 3-26 258-281 (416)
329 2f6r_A COA synthase, bifunctio 94.7 0.018 6.2E-07 56.3 3.7 22 3-24 75-96 (281)
330 2z0h_A DTMP kinase, thymidylat 94.7 0.034 1.2E-06 51.0 5.5 22 5-26 2-23 (197)
331 2pez_A Bifunctional 3'-phospho 94.7 0.017 6E-07 52.1 3.4 23 4-26 6-28 (179)
332 3aez_A Pantothenate kinase; tr 94.7 0.017 5.8E-07 57.4 3.5 23 4-26 91-113 (312)
333 2v54_A DTMP kinase, thymidylat 94.7 0.016 5.5E-07 53.6 3.2 23 4-26 5-27 (204)
334 2jeo_A Uridine-cytidine kinase 94.7 0.018 6E-07 55.2 3.5 23 4-26 26-48 (245)
335 3dl0_A Adenylate kinase; phosp 94.6 0.016 5.4E-07 54.3 3.1 22 5-26 2-23 (216)
336 4e22_A Cytidylate kinase; P-lo 94.6 0.017 5.8E-07 55.6 3.3 23 4-26 28-50 (252)
337 1z6g_A Guanylate kinase; struc 94.6 0.015 5.1E-07 54.6 2.7 23 4-26 24-46 (218)
338 3nwj_A ATSK2; P loop, shikimat 94.5 0.015 5.1E-07 55.6 2.6 23 4-26 49-71 (250)
339 3d3q_A TRNA delta(2)-isopenten 94.5 0.018 6.1E-07 57.3 3.3 23 4-26 8-30 (340)
340 1zak_A Adenylate kinase; ATP:A 94.5 0.016 5.3E-07 54.6 2.7 24 3-26 5-28 (222)
341 1gvn_B Zeta; postsegregational 94.5 0.016 5.6E-07 56.8 2.9 23 4-26 34-56 (287)
342 1aky_A Adenylate kinase; ATP:A 94.5 0.018 6E-07 54.1 3.0 23 4-26 5-27 (220)
343 1s96_A Guanylate kinase, GMP k 94.5 0.02 6.8E-07 53.6 3.3 23 4-26 17-39 (219)
344 1qvr_A CLPB protein; coiled co 94.5 0.047 1.6E-06 62.6 7.1 22 5-26 193-214 (854)
345 1m7g_A Adenylylsulfate kinase; 94.5 0.021 7.2E-07 53.2 3.4 23 4-26 26-48 (211)
346 2ck3_D ATP synthase subunit be 94.5 0.06 2E-06 55.7 7.0 51 4-56 154-206 (482)
347 3kl4_A SRP54, signal recogniti 94.5 0.065 2.2E-06 55.4 7.3 24 3-26 97-120 (433)
348 2f1r_A Molybdopterin-guanine d 94.4 0.012 3.9E-07 52.7 1.5 24 3-26 2-25 (171)
349 3l0o_A Transcription terminati 94.4 0.088 3E-06 52.8 7.8 39 4-44 176-216 (427)
350 1vht_A Dephospho-COA kinase; s 94.4 0.024 8.1E-07 53.1 3.7 22 4-25 5-26 (218)
351 3hjn_A DTMP kinase, thymidylat 94.4 0.063 2.2E-06 49.2 6.5 34 5-40 2-35 (197)
352 2i3b_A HCR-ntpase, human cance 94.4 0.018 6.2E-07 52.4 2.7 24 4-27 2-25 (189)
353 1np6_A Molybdopterin-guanine d 94.3 0.023 7.9E-07 50.9 3.3 24 3-26 6-29 (174)
354 3ake_A Cytidylate kinase; CMP 94.3 0.022 7.5E-07 52.8 3.2 22 5-26 4-25 (208)
355 1gtv_A TMK, thymidylate kinase 94.3 0.01 3.6E-07 55.4 1.0 23 4-26 1-23 (214)
356 3dm5_A SRP54, signal recogniti 94.3 0.08 2.7E-06 54.7 7.6 24 3-26 100-123 (443)
357 3a8t_A Adenylate isopentenyltr 94.3 0.024 8.1E-07 56.3 3.5 23 4-26 41-63 (339)
358 2ehv_A Hypothetical protein PH 94.3 0.023 7.8E-07 54.5 3.3 23 4-26 31-53 (251)
359 3tlx_A Adenylate kinase 2; str 94.2 0.024 8.2E-07 54.1 3.2 23 4-26 30-52 (243)
360 3co5_A Putative two-component 94.2 0.012 4.1E-07 51.0 1.0 22 5-26 29-50 (143)
361 2yhs_A FTSY, cell division pro 94.1 0.12 4.2E-06 54.0 8.6 34 4-40 294-327 (503)
362 3crm_A TRNA delta(2)-isopenten 94.1 0.025 8.4E-07 56.0 3.2 23 4-26 6-28 (323)
363 1cr0_A DNA primase/helicase; R 94.1 0.053 1.8E-06 53.5 5.8 37 4-42 36-73 (296)
364 3tqc_A Pantothenate kinase; bi 94.1 0.029 9.9E-07 55.6 3.7 23 4-26 93-115 (321)
365 3lnc_A Guanylate kinase, GMP k 94.1 0.017 5.9E-07 54.7 2.1 23 4-26 28-51 (231)
366 1rj9_A FTSY, signal recognitio 94.1 0.025 8.4E-07 55.9 3.2 24 3-26 102-125 (304)
367 2onk_A Molybdate/tungstate ABC 94.1 0.028 9.5E-07 53.4 3.5 23 4-26 25-47 (240)
368 2qmh_A HPR kinase/phosphorylas 94.1 0.028 9.7E-07 50.8 3.3 23 4-26 35-57 (205)
369 1in4_A RUVB, holliday junction 94.1 0.022 7.7E-07 57.3 3.0 128 114-261 174-311 (334)
370 2r6a_A DNAB helicase, replicat 94.1 0.13 4.6E-06 54.0 9.0 47 4-54 204-251 (454)
371 1e4v_A Adenylate kinase; trans 94.0 0.025 8.5E-07 52.8 3.0 22 5-26 2-23 (214)
372 3be4_A Adenylate kinase; malar 94.0 0.025 8.5E-07 53.0 3.0 23 4-26 6-28 (217)
373 3r20_A Cytidylate kinase; stru 94.0 0.026 8.9E-07 53.1 3.0 23 4-26 10-32 (233)
374 1g5t_A COB(I)alamin adenosyltr 94.0 0.049 1.7E-06 49.3 4.7 107 5-132 30-150 (196)
375 2xb4_A Adenylate kinase; ATP-b 94.0 0.026 9E-07 53.1 3.1 22 5-26 2-23 (223)
376 3exa_A TRNA delta(2)-isopenten 94.0 0.03 1E-06 54.8 3.4 23 4-26 4-26 (322)
377 2eyu_A Twitching motility prot 94.0 0.037 1.3E-06 53.4 4.1 34 4-39 26-59 (261)
378 3tif_A Uncharacterized ABC tra 94.0 0.026 9E-07 53.5 3.0 23 4-26 32-54 (235)
379 2p5t_B PEZT; postsegregational 94.0 0.019 6.4E-07 55.3 2.0 23 4-26 33-55 (253)
380 2pcj_A ABC transporter, lipopr 93.9 0.026 8.9E-07 53.1 2.9 23 4-26 31-53 (224)
381 2hf9_A Probable hydrogenase ni 93.9 0.032 1.1E-06 52.5 3.5 25 2-26 37-61 (226)
382 3b9q_A Chloroplast SRP recepto 93.9 0.031 1.1E-06 55.2 3.5 34 4-40 101-134 (302)
383 1sq5_A Pantothenate kinase; P- 93.9 0.03 1E-06 55.7 3.4 23 4-26 81-103 (308)
384 3b85_A Phosphate starvation-in 93.9 0.024 8.4E-07 52.5 2.6 23 4-26 23-45 (208)
385 2q6t_A DNAB replication FORK h 93.9 0.15 5.1E-06 53.5 9.0 49 4-56 201-250 (444)
386 2dr3_A UPF0273 protein PH0284; 93.9 0.036 1.2E-06 52.9 3.9 38 4-43 24-61 (247)
387 3bgw_A DNAB-like replicative h 93.9 0.12 4.2E-06 53.9 8.2 48 4-55 198-245 (444)
388 1a7j_A Phosphoribulokinase; tr 93.9 0.018 6.1E-07 56.6 1.7 25 2-26 4-28 (290)
389 1ypw_A Transitional endoplasmi 93.8 0.045 1.5E-06 62.1 5.0 23 4-26 239-261 (806)
390 2ga8_A Hypothetical 39.9 kDa p 93.8 0.033 1.1E-06 55.6 3.5 29 3-33 24-52 (359)
391 1ak2_A Adenylate kinase isoenz 93.8 0.033 1.1E-06 52.8 3.4 23 4-26 17-39 (233)
392 3end_A Light-independent proto 93.8 0.056 1.9E-06 53.6 5.3 42 2-45 40-81 (307)
393 1tue_A Replication protein E1; 93.8 0.023 7.9E-07 51.7 2.1 23 4-26 59-81 (212)
394 1fx0_B ATP synthase beta chain 93.8 0.14 4.8E-06 53.2 8.2 90 4-95 166-277 (498)
395 2cbz_A Multidrug resistance-as 93.8 0.03 1E-06 53.2 3.0 23 4-26 32-54 (237)
396 2afh_E Nitrogenase iron protei 93.8 0.048 1.7E-06 53.6 4.6 40 3-44 2-41 (289)
397 1cp2_A CP2, nitrogenase iron p 93.8 0.05 1.7E-06 52.8 4.7 40 3-44 1-40 (269)
398 2wsm_A Hydrogenase expression/ 93.7 0.034 1.2E-06 52.1 3.4 25 2-26 29-53 (221)
399 1ltq_A Polynucleotide kinase; 93.7 0.034 1.2E-06 55.0 3.4 23 4-26 3-25 (301)
400 3gfo_A Cobalt import ATP-bindi 93.6 0.031 1.1E-06 54.2 2.9 23 4-26 35-57 (275)
401 1zu4_A FTSY; GTPase, signal re 93.6 0.045 1.5E-06 54.4 4.1 38 3-42 105-142 (320)
402 1b0u_A Histidine permease; ABC 93.6 0.032 1.1E-06 53.8 3.0 23 4-26 33-55 (262)
403 2d2e_A SUFC protein; ABC-ATPas 93.6 0.037 1.3E-06 53.0 3.3 23 4-26 30-52 (250)
404 1sgw_A Putative ABC transporte 93.6 0.028 9.6E-07 52.3 2.4 23 4-26 36-58 (214)
405 4g1u_C Hemin import ATP-bindin 93.6 0.033 1.1E-06 53.8 3.0 23 4-26 38-60 (266)
406 3foz_A TRNA delta(2)-isopenten 93.6 0.037 1.3E-06 54.1 3.2 23 4-26 11-33 (316)
407 2olj_A Amino acid ABC transpor 93.6 0.033 1.1E-06 53.6 3.0 23 4-26 51-73 (263)
408 3vr4_D V-type sodium ATPase su 93.6 0.075 2.6E-06 54.7 5.7 92 4-95 152-259 (465)
409 2dyk_A GTP-binding protein; GT 93.6 0.043 1.5E-06 48.2 3.5 25 3-27 1-25 (161)
410 1ji0_A ABC transporter; ATP bi 93.6 0.034 1.2E-06 52.9 3.0 23 4-26 33-55 (240)
411 2pze_A Cystic fibrosis transme 93.5 0.035 1.2E-06 52.4 3.0 23 4-26 35-57 (229)
412 4eaq_A DTMP kinase, thymidylat 93.5 0.056 1.9E-06 51.0 4.4 23 4-26 27-49 (229)
413 1yrb_A ATP(GTP)binding protein 93.5 0.044 1.5E-06 52.9 3.7 24 3-26 14-37 (262)
414 1mv5_A LMRA, multidrug resista 93.5 0.038 1.3E-06 52.7 3.2 23 4-26 29-51 (243)
415 1g6h_A High-affinity branched- 93.5 0.036 1.2E-06 53.4 3.0 23 4-26 34-56 (257)
416 3pxg_A Negative regulator of g 93.5 0.06 2.1E-06 56.9 5.0 22 5-26 203-224 (468)
417 2ff7_A Alpha-hemolysin translo 93.4 0.037 1.3E-06 52.9 3.0 23 4-26 36-58 (247)
418 3v9p_A DTMP kinase, thymidylat 93.4 0.077 2.6E-06 49.7 5.1 23 4-26 26-48 (227)
419 2zu0_C Probable ATP-dependent 93.4 0.04 1.4E-06 53.3 3.3 23 4-26 47-69 (267)
420 3cmu_A Protein RECA, recombina 93.4 0.1 3.6E-06 63.7 7.4 85 4-95 1428-1516(2050)
421 1vpl_A ABC transporter, ATP-bi 93.4 0.037 1.3E-06 53.1 3.0 23 4-26 42-64 (256)
422 4dzz_A Plasmid partitioning pr 93.4 0.064 2.2E-06 49.5 4.5 43 3-47 1-44 (206)
423 1oix_A RAS-related protein RAB 93.3 0.043 1.5E-06 50.1 3.2 24 4-27 30-53 (191)
424 2wji_A Ferrous iron transport 93.3 0.048 1.7E-06 48.3 3.4 23 4-26 4-26 (165)
425 2ghi_A Transport protein; mult 93.3 0.039 1.3E-06 53.1 3.0 32 4-39 47-78 (260)
426 2og2_A Putative signal recogni 93.3 0.045 1.5E-06 55.2 3.5 34 4-40 158-191 (359)
427 3cf2_A TER ATPase, transitiona 93.3 0.12 4.1E-06 57.8 7.2 69 5-95 513-581 (806)
428 2qi9_C Vitamin B12 import ATP- 93.3 0.041 1.4E-06 52.6 3.0 23 4-26 27-49 (249)
429 3rfe_A Platelet glycoprotein I 93.2 0.1 3.6E-06 44.0 5.1 45 545-592 24-68 (130)
430 2ixe_A Antigen peptide transpo 93.2 0.042 1.4E-06 53.3 3.0 23 4-26 46-68 (271)
431 2v9p_A Replication protein E1; 93.1 0.044 1.5E-06 53.9 3.1 23 4-26 127-149 (305)
432 1nlf_A Regulatory protein REPA 93.1 0.044 1.5E-06 53.5 3.1 23 4-26 31-53 (279)
433 2yz2_A Putative ABC transporte 93.1 0.044 1.5E-06 53.0 3.0 23 4-26 34-56 (266)
434 1q3t_A Cytidylate kinase; nucl 93.1 0.053 1.8E-06 51.5 3.6 24 3-26 16-39 (236)
435 2r8r_A Sensor protein; KDPD, P 93.1 0.084 2.9E-06 49.0 4.7 37 5-43 8-44 (228)
436 2nq2_C Hypothetical ABC transp 93.1 0.044 1.5E-06 52.5 2.9 23 4-26 32-54 (253)
437 2ihy_A ABC transporter, ATP-bi 93.1 0.044 1.5E-06 53.3 3.0 23 4-26 48-70 (279)
438 2f9l_A RAB11B, member RAS onco 92.9 0.056 1.9E-06 49.6 3.3 23 4-26 6-28 (199)
439 1nij_A Hypothetical protein YJ 92.8 0.05 1.7E-06 54.3 3.0 25 2-26 3-27 (318)
440 2zej_A Dardarin, leucine-rich 92.8 0.05 1.7E-06 49.3 2.8 22 5-26 4-25 (184)
441 4edh_A DTMP kinase, thymidylat 92.8 0.13 4.6E-06 47.6 5.8 23 4-26 7-29 (213)
442 1q57_A DNA primase/helicase; d 92.8 0.26 8.9E-06 52.6 8.8 49 4-56 243-292 (503)
443 3cmw_A Protein RECA, recombina 92.8 0.17 5.9E-06 61.1 7.9 86 4-96 733-822 (1706)
444 2bjv_A PSP operon transcriptio 92.8 0.066 2.3E-06 51.8 3.8 22 5-26 31-52 (265)
445 2j37_W Signal recognition part 92.8 0.34 1.1E-05 51.2 9.3 24 3-26 101-124 (504)
446 2vp4_A Deoxynucleoside kinase; 92.7 0.046 1.6E-06 51.7 2.4 23 4-26 21-43 (230)
447 3cwq_A Para family chromosome 92.7 0.13 4.3E-06 47.7 5.4 41 5-48 2-43 (209)
448 1svm_A Large T antigen; AAA+ f 92.6 0.06 2.1E-06 54.7 3.3 23 4-26 170-192 (377)
449 3eph_A TRNA isopentenyltransfe 92.6 0.057 2E-06 54.8 3.1 23 4-26 3-25 (409)
450 2wjg_A FEOB, ferrous iron tran 92.6 0.068 2.3E-06 48.4 3.4 23 4-26 8-30 (188)
451 3p32_A Probable GTPase RV1496/ 92.6 0.073 2.5E-06 54.0 3.9 25 2-26 78-102 (355)
452 1ofh_A ATP-dependent HSL prote 92.5 0.057 1.9E-06 53.6 3.0 22 5-26 52-73 (310)
453 2pjz_A Hypothetical protein ST 92.5 0.058 2E-06 51.9 2.9 23 4-26 31-53 (263)
454 2ce2_X GTPase HRAS; signaling 92.4 0.064 2.2E-06 47.1 2.9 23 5-27 5-27 (166)
455 3ld9_A DTMP kinase, thymidylat 92.4 0.16 5.6E-06 47.3 5.8 23 4-26 22-44 (223)
456 3cmw_A Protein RECA, recombina 92.4 0.2 6.8E-06 60.5 7.8 86 4-96 384-473 (1706)
457 1z2a_A RAS-related protein RAB 92.4 0.068 2.3E-06 47.2 3.0 22 5-26 7-28 (168)
458 3io3_A DEHA2D07832P; chaperone 92.4 0.12 4E-06 52.0 5.0 43 3-47 18-62 (348)
459 3nh6_A ATP-binding cassette SU 92.3 0.047 1.6E-06 53.8 2.1 23 4-26 81-103 (306)
460 2ocp_A DGK, deoxyguanosine kin 92.3 0.068 2.3E-06 50.9 3.1 23 4-26 3-25 (241)
461 4hlc_A DTMP kinase, thymidylat 92.3 0.095 3.2E-06 48.3 4.0 29 4-34 3-31 (205)
462 3sop_A Neuronal-specific septi 92.3 0.069 2.4E-06 51.7 3.2 22 5-26 4-25 (270)
463 3con_A GTPase NRAS; structural 92.3 0.069 2.4E-06 48.5 3.0 23 5-27 23-45 (190)
464 2gno_A DNA polymerase III, gam 92.3 0.2 6.9E-06 49.4 6.5 23 4-26 19-41 (305)
465 2bbs_A Cystic fibrosis transme 92.2 0.066 2.2E-06 52.4 2.9 23 4-26 65-87 (290)
466 2nzj_A GTP-binding protein REM 92.2 0.077 2.6E-06 47.2 3.2 23 5-27 6-28 (175)
467 2gj8_A MNME, tRNA modification 92.2 0.082 2.8E-06 47.2 3.3 23 4-26 5-27 (172)
468 3llm_A ATP-dependent RNA helic 92.2 0.24 8.3E-06 46.7 6.8 23 4-26 77-99 (235)
469 3gmt_A Adenylate kinase; ssgci 92.2 0.075 2.6E-06 49.7 3.1 22 5-26 10-31 (230)
470 3iqw_A Tail-anchored protein t 92.2 0.14 4.7E-06 51.2 5.2 43 3-47 16-58 (334)
471 3fkq_A NTRC-like two-domain pr 92.1 0.11 3.8E-06 53.0 4.7 43 2-46 142-185 (373)
472 3hws_A ATP-dependent CLP prote 92.1 0.066 2.2E-06 54.6 2.9 23 4-26 52-74 (363)
473 2lkc_A Translation initiation 92.1 0.11 3.8E-06 46.4 4.1 25 3-27 8-32 (178)
474 3cmu_A Protein RECA, recombina 92.1 0.2 6.9E-06 61.3 7.4 85 4-95 384-472 (2050)
475 1pgv_A TMD-1, tropomodulin TMD 92.1 0.11 3.8E-06 47.2 4.0 113 325-444 37-168 (197)
476 3lv8_A DTMP kinase, thymidylat 92.1 0.17 5.8E-06 47.7 5.4 23 4-26 28-50 (236)
477 1r6b_X CLPA protein; AAA+, N-t 92.1 0.2 7E-06 56.6 7.2 22 5-26 209-230 (758)
478 2orw_A Thymidine kinase; TMTK, 92.1 0.076 2.6E-06 48.1 3.0 23 4-26 4-26 (184)
479 3kjh_A CO dehydrogenase/acetyl 92.0 0.097 3.3E-06 50.0 3.9 41 6-48 3-43 (254)
480 3kta_A Chromosome segregation 92.0 0.084 2.9E-06 47.6 3.2 22 5-26 28-49 (182)
481 3gqb_B V-type ATP synthase bet 92.0 0.081 2.8E-06 54.4 3.4 92 4-95 148-262 (464)
482 3tui_C Methionine import ATP-b 92.0 0.08 2.7E-06 53.3 3.3 23 4-26 55-77 (366)
483 1um8_A ATP-dependent CLP prote 92.0 0.069 2.4E-06 54.7 2.9 22 5-26 74-95 (376)
484 1u8z_A RAS-related protein RAL 92.0 0.082 2.8E-06 46.6 3.0 23 5-27 6-28 (168)
485 2ged_A SR-beta, signal recogni 91.9 0.087 3E-06 47.9 3.2 24 4-27 49-72 (193)
486 1svi_A GTP-binding protein YSX 91.9 0.095 3.3E-06 47.7 3.5 24 3-26 23-46 (195)
487 3tqf_A HPR(Ser) kinase; transf 91.9 0.1 3.4E-06 46.0 3.3 23 4-26 17-39 (181)
488 2h92_A Cytidylate kinase; ross 91.9 0.071 2.4E-06 49.8 2.6 22 5-26 5-26 (219)
489 1m7b_A RND3/RHOE small GTP-bin 91.8 0.082 2.8E-06 47.7 2.9 22 5-26 9-30 (184)
490 2r9v_A ATP synthase subunit al 91.8 0.11 3.7E-06 54.1 4.1 88 4-95 176-278 (515)
491 1c1y_A RAS-related protein RAP 91.8 0.088 3E-06 46.4 3.0 22 5-26 5-26 (167)
492 1z08_A RAS-related protein RAB 91.8 0.087 3E-06 46.6 3.0 23 5-27 8-30 (170)
493 1p5z_B DCK, deoxycytidine kina 91.8 0.064 2.2E-06 51.9 2.2 24 3-26 24-47 (263)
494 3fvq_A Fe(3+) IONS import ATP- 91.7 0.089 3.1E-06 52.9 3.2 23 4-26 31-53 (359)
495 1z0j_A RAB-22, RAS-related pro 91.7 0.09 3.1E-06 46.5 3.0 23 5-27 8-30 (170)
496 1ek0_A Protein (GTP-binding pr 91.7 0.091 3.1E-06 46.4 3.0 23 5-27 5-27 (170)
497 3q72_A GTP-binding protein RAD 91.7 0.078 2.7E-06 46.7 2.6 22 5-26 4-25 (166)
498 1kao_A RAP2A; GTP-binding prot 91.7 0.091 3.1E-06 46.2 3.0 23 5-27 5-27 (167)
499 3ch4_B Pmkase, phosphomevalona 91.6 0.1 3.5E-06 47.5 3.3 23 4-26 12-34 (202)
500 3ihw_A Centg3; RAS, centaurin, 91.6 0.092 3.2E-06 47.5 3.0 23 5-27 22-44 (184)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.6e-38 Score=348.95 Aligned_cols=269 Identities=16% Similarity=0.208 Sum_probs=210.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHc--ccchhhcccccceEEecCcc--chHHHHHHHHHHhhhhhh---h--ccCCChhH
Q 048083 2 THQIIAILGERGSGKTTLARTVYD--RVDVKRHFAKRAWIRVRGDA--KFRDVLIDILQQIDDETL---V--EASAPEAD 72 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~---~--~~~~~~~~ 72 (692)
++++|+|+|||||||||||+++|+ +.+++.+|++++||++++.+ +...++..|++++..... . ....+.++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 478999999999999999999998 56689999999999999875 788999999999986521 0 02234556
Q ss_pred HHHHHHHHhccc-cEEEEEeCCCCccccccc-CCCCc-----------cccc---CCccccCCCCHHHHHHHHHhhcccc
Q 048083 73 LVSSLTTLLKEI-SYLIVVEDVETPQVCNPN-NIPPE-----------AEAA---GPTLHLSRLNKEESWKLLLKKVPVA 136 (692)
Q Consensus 73 ~~~~l~~~L~~k-~~LlVLDdv~~~~~~~~~-~~~~~-----------~~~~---~~~~~l~~L~~~ea~~Lf~~~a~~~ 136 (692)
....+++.|+++ |+||||||||+.+++ .+ ..++. +... ...|+|++|+++||++||.+++|..
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 309 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQEETI-RWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPM 309 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHHHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCchhh-cccccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCC
Confidence 788999999996 999999999997754 22 11222 1112 1357999999999999999998765
Q ss_pred ccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHHHh-c---C-------CCCCCCCCccc
Q 048083 137 TAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKEAKYWSKVIEHA-D---N-------SRSGSGTGSGL 205 (692)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~~~~w~~~l~~l-~---~-------~~s~~~L~~~~ 205 (692)
.......+++++|+++|+|+||||+++|+.++.+. .+|...+... . . ..||+.||+.+
T Consensus 310 ----------~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~l 378 (549)
T 2a5y_B 310 ----------PVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMAL 378 (549)
T ss_dssp ----------C--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHH
T ss_pred ----------CCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHH
Confidence 22467788999999999999999999999998774 3333333321 1 1 67999999999
Q ss_pred hhHHh-----------hhcCCCCCCccchhhHHHHHHhc--CCCCC-----chHHHHHHHHHHHHhccceeeeeccCCCC
Q 048083 206 KPFFL-----------YVGMFPRGFEIPVRRLIHLWCAE--GFAAP-----IDTDLAEMYFEELVIRNLIQVTKWRLDGS 267 (692)
Q Consensus 206 k~~fl-----------~~a~f~~~~~i~~~~l~~~w~~~--g~~~~-----~~~~~~~~~~~~L~~~sLi~~~~~~~~~~ 267 (692)
|.||+ |||+||+++.|+ +..|+|+ ||+.+ ..++.+. ++++|+++||++....+ .
T Consensus 379 k~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~ 450 (549)
T 2a5y_B 379 QRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---P 450 (549)
T ss_dssp HHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---S
T ss_pred HHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---C
Confidence 99999 999999999988 7899999 88954 2455566 99999999999987642 4
Q ss_pred ceEEEcChHHHHHHHHhhhccCe
Q 048083 268 PKMCRMPSAVYRVFSKEAENAGF 290 (692)
Q Consensus 268 ~~~~~~h~lv~~~~~~~~~~~~~ 290 (692)
...|+|||+||++|+.++.+++.
T Consensus 451 ~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 451 VLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp SCEEECCHHHHHHHHTTSCTHHH
T ss_pred ceEEEeChHHHHHHHHHHHHHHH
Confidence 45799999999999988876543
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=4.7e-31 Score=321.12 Aligned_cols=264 Identities=19% Similarity=0.320 Sum_probs=207.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccch-hhcc-cccceEEecCccc--hHHHHHHHHHHhhhhhhh--ccCCChhHHHH
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDV-KRHF-AKRAWIRVRGDAK--FRDVLIDILQQIDDETLV--EASAPEADLVS 75 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~F-~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~ 75 (692)
++++|+|+||||+||||||+++|++.+. ...| +.++||++++..+ ....+..++..+...... ......++...
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 225 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKD 225 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHH
Confidence 5689999999999999999999998543 4556 5577999988543 344466666666654321 13456677888
Q ss_pred HHHHHhccc--cEEEEEeCCCCcccccccCCCCc----------c---cccCCccccCC-CCHHHHHHHHHhhccccccc
Q 048083 76 SLTTLLKEI--SYLIVVEDVETPQVCNPNNIPPE----------A---EAAGPTLHLSR-LNKEESWKLLLKKVPVATAA 139 (692)
Q Consensus 76 ~l~~~L~~k--~~LlVLDdv~~~~~~~~~~~~~~----------~---~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~ 139 (692)
.++..++++ |+||||||||+.++|+.+..... + ......+++++ |+++||++||...++..
T Consensus 226 ~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--- 302 (1249)
T 3sfz_A 226 RLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--- 302 (1249)
T ss_dssp HHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---
T ss_pred HHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---
Confidence 889999877 99999999999888877621111 1 12234568885 99999999999888433
Q ss_pred cCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHHHhcC---------------------CCCC
Q 048083 140 ESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKEAKYWSKVIEHADN---------------------SRSG 198 (692)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~~~~w~~~l~~l~~---------------------~~s~ 198 (692)
.....+.+++|+++|+|+||||+++|++|+.+. ..|..+++++.. ..||
T Consensus 303 ---------~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~ 372 (1249)
T 3sfz_A 303 ---------KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISV 372 (1249)
T ss_dssp ---------STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHH
T ss_pred ---------hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHH
Confidence 233456789999999999999999999999876 568888877744 2367
Q ss_pred CCCCccchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHHHHHhccceeeeeccCCCCceEEEcChHHH
Q 048083 199 SGTGSGLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFEELVIRNLIQVTKWRLDGSPKMCRMPSAVY 278 (692)
Q Consensus 199 ~~L~~~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~L~~~sLi~~~~~~~~~~~~~~~~h~lv~ 278 (692)
+.|++++|+||+|||+||+++.|+.+.++.+|.++ ++.+..++++|++++|++... ++....|+||+++|
T Consensus 373 ~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~ 442 (1249)
T 3sfz_A 373 EMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQV 442 (1249)
T ss_dssp HTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHH
T ss_pred HhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHH
Confidence 88999999999999999999999999999999754 567899999999999999765 34556799999999
Q ss_pred HHHHHhhhcc
Q 048083 279 RVFSKEAENA 288 (692)
Q Consensus 279 ~~~~~~~~~~ 288 (692)
++++..+.++
T Consensus 443 ~~~~~~~~~~ 452 (1249)
T 3sfz_A 443 DFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHhhhhHH
Confidence 9999887644
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=1.7e-31 Score=295.65 Aligned_cols=250 Identities=19% Similarity=0.197 Sum_probs=189.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccchhhcccc-cceEEecCccchHHHHHHHHHHhhhhhh---hcc------CCChh
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDVKRHFAK-RAWIRVRGDAKFRDVLIDILQQIDDETL---VEA------SAPEA 71 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~------~~~~~ 71 (692)
++++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++.+..... ... ....+
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~le 228 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHH
Confidence 3689999999999999999999998778999986 8999999998888888888776543211 000 01233
Q ss_pred HHHHHHHHHh---ccccEEEEEeCCCCcccccccCCCCc-----------c--cccCCccccC------CCCHHHHHHHH
Q 048083 72 DLVSSLTTLL---KEISYLIVVEDVETPQVCNPNNIPPE-----------A--EAAGPTLHLS------RLNKEESWKLL 129 (692)
Q Consensus 72 ~~~~~l~~~L---~~k~~LlVLDdv~~~~~~~~~~~~~~-----------~--~~~~~~~~l~------~L~~~ea~~Lf 129 (692)
.....+++.| +++|+||||||||+.++|+.+. ++. + ......++++ +|+.+||++||
T Consensus 229 eL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF 307 (1221)
T 1vt4_I 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307 (1221)
T ss_dssp HHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHH
Confidence 4456677665 6799999999999988887663 222 1 1112245677 99999999999
Q ss_pred HhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCC--ChHHHHHHHH-HhcC--CCCCCCCCcc
Q 048083 130 LKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTK--EAKYWSKVIE-HADN--SRSGSGTGSG 204 (692)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~--~~~~w~~~l~-~l~~--~~s~~~L~~~ 204 (692)
++.. +. . . .++..+ .|+|+||||+++|+.|+.+ ..++|...-. .+.. ..||+.|+++
T Consensus 308 ~~~~-g~----------~-~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~e 369 (1221)
T 1vt4_I 308 LKYL-DC----------R-P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369 (1221)
T ss_dssp HHHH-CC----------C-T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTT
T ss_pred HHHc-CC----------C-H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHH
Confidence 9884 22 1 1 112233 3999999999999999988 4788875310 0000 5689999999
Q ss_pred c-hhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHHHHHhccceeeeeccCCCCceEEEcChHHHHHH
Q 048083 205 L-KPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFEELVIRNLIQVTKWRLDGSPKMCRMPSAVYRVF 281 (692)
Q Consensus 205 ~-k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~L~~~sLi~~~~~~~~~~~~~~~~h~lv~~~~ 281 (692)
+ |+||++||+||+++.|+.+.++.+|.++| ++.+..++++|+++||++.. +....|+|||++++++
T Consensus 370 elK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 9 99999999999999999999999999876 34588999999999999973 2235799999999855
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=275.46 Aligned_cols=261 Identities=20% Similarity=0.325 Sum_probs=195.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccch-hhcc-cccceEEecCccchHHHHHHHH---HHhhhhhh--hccCCChhHHH
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDV-KRHF-AKRAWIRVRGDAKFRDVLIDIL---QQIDDETL--VEASAPEADLV 74 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~~~i~---~~l~~~~~--~~~~~~~~~~~ 74 (692)
+.++|+|+||||+||||||++++++..+ +..| ++++|++++... ...++..+. ..+..... .....+.+...
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAK 224 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHHHHHHHHHhccccccccCCCCCHHHHH
Confidence 4689999999999999999999998655 7889 479999987752 333444433 33331111 11344566778
Q ss_pred HHHHHHhcc--ccEEEEEeCCCCcccccccCCCCc----------c-cccCCcccc---CCCCHHHHHHHHHhhcccccc
Q 048083 75 SSLTTLLKE--ISYLIVVEDVETPQVCNPNNIPPE----------A-EAAGPTLHL---SRLNKEESWKLLLKKVPVATA 138 (692)
Q Consensus 75 ~~l~~~L~~--k~~LlVLDdv~~~~~~~~~~~~~~----------~-~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~ 138 (692)
..+...+.+ +++||||||||+..+++.++.+.. . ...+..+++ ++|+.+||+++|...++..
T Consensus 225 ~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-- 302 (591)
T 1z6t_A 225 DRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-- 302 (591)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC--
T ss_pred HHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCC--
Confidence 888888877 789999999999776665421111 0 111334444 5899999999999988442
Q ss_pred ccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHHHhcC---------------------CCC
Q 048083 139 AESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLSTKEAKYWSKVIEHADN---------------------SRS 197 (692)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~~~~~~w~~~l~~l~~---------------------~~s 197 (692)
.....+.+.+|+++|+|+||||+++|+.++... ..|..+++.+.. ..|
T Consensus 303 ----------~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s 371 (591)
T 1z6t_A 303 ----------KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS 371 (591)
T ss_dssp ----------GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHH
T ss_pred ----------cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHH
Confidence 122245689999999999999999999998874 468888777653 224
Q ss_pred CCCCCccchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHHHHHhccceeeeeccCCCCceEEEcChHH
Q 048083 198 GSGTGSGLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFEELVIRNLIQVTKWRLDGSPKMCRMPSAV 277 (692)
Q Consensus 198 ~~~L~~~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~L~~~sLi~~~~~~~~~~~~~~~~h~lv 277 (692)
|+.|+++.|.||+++|+||+++.++...+...|.++ .+.+..+++.|++++|++... ++....|+||+++
T Consensus 372 ~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv 441 (591)
T 1z6t_A 372 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQ 441 (591)
T ss_dssp HHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHH
T ss_pred HHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHH
Confidence 678899999999999999999999999999999643 456789999999999998654 2334579999999
Q ss_pred HHHHHHhhh
Q 048083 278 YRVFSKEAE 286 (692)
Q Consensus 278 ~~~~~~~~~ 286 (692)
+++++....
T Consensus 442 ~~~~~~~~~ 450 (591)
T 1z6t_A 442 VDFLTEKNC 450 (591)
T ss_dssp HHHHHHHTG
T ss_pred HHHHHhhhh
Confidence 999998743
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=7.1e-27 Score=261.99 Aligned_cols=134 Identities=23% Similarity=0.199 Sum_probs=92.4
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
+..++++.+.. . .....+...|.++++|++|.+.++.+ ....+..| .++++|++|+|++|.++.+++
T Consensus 31 ~~~l~~L~Ls~-n--~l~~~~~~~~~~l~~L~~L~Ls~n~l--------~~i~~~~~--~~l~~L~~L~Ls~n~l~~~~p 97 (606)
T 3vq2_A 31 PSSTKNIDLSF-N--PLKILKSYSFSNFSELQWLDLSRCEI--------ETIEDKAW--HGLHHLSNLILTGNPIQSFSP 97 (606)
T ss_dssp CTTCCEEECTT-S--CCCEECTTTTTTCTTCCEEECTTCCC--------CEECTTTT--TTCTTCCEEECTTCCCCCCCT
T ss_pred CCCcCEEECCC-C--CcCEeChhhccCCccCcEEeCCCCcc--------cccCHHHh--hchhhcCEeECCCCcccccCh
Confidence 35667776662 2 22334444556778888888877662 22345667 778888888888888776644
Q ss_pred hhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccce--ecChhhhccccCceeecccccccc
Q 048083 381 HVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLR--YLPDSIWKAKKLQHLYLNWIHSAI 447 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~ 447 (692)
..|+++++|++|++++|.+..+| ..++++++|++|++++|.++ .+|..++++++|++|++++|.+..
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 43778888888888888777666 55777888888888888776 467777778888888777776553
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4.1e-27 Score=268.12 Aligned_cols=340 Identities=15% Similarity=0.165 Sum_probs=255.0
Q ss_pred ccceeEEEEEecCCCCCc----------------ccCCcc-ccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcc
Q 048083 301 SLFVRRLAVYLSGGVNTK----------------LIPSSF-LDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLV 363 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~----------------~~~~~~-~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (692)
....+.+.+..+. .... .+|..+ |.++++|+.|.+.++... ..+|..| .+++
T Consensus 447 L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~--------~~iP~~l--~~L~ 515 (876)
T 4ecn_A 447 LTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM--------TQLPDFL--YDLP 515 (876)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC--------CSCCGGG--GGCS
T ss_pred CCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC--------ccChHHH--hCCC
Confidence 4567888887443 1210 155554 457999999999988622 2356778 8999
Q ss_pred eEEEEeecCCC-CCC--CChhhhcccc-------ccceeeccCCCccccCc--cccCCCCCeEEecCCccceecChhhhc
Q 048083 364 LLTVLDLEGVY-KPK--LSDHVIGKLL-------HLSYLGLRSTFIDSLPN--SVGNLRYLETLDVKHTKLRYLPDSIWK 431 (692)
Q Consensus 364 ~L~~L~L~~~~-~~~--l~~~~~~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~l~~lp~~~~~ 431 (692)
+|+.|+|++|. ++. +|.. ++.+. +|++|++++|.+..+|. .++++++|++|++++|.++.+| .+++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~ 593 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGT 593 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCT
T ss_pred CCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcC
Confidence 99999999998 774 7776 77666 99999999999999998 8999999999999999888888 8899
Q ss_pred cccCceeecccccccccccccCCCcc-cccccccccCCCcccccccccccccc--cccccccccchh-hHHHHH-HHh-h
Q 048083 432 AKKLQHLYLNWIHSAISWLNFSSLNN-LQTLWGLSMGDDSLFNQTFDFTKLAS--LRKLGVKCYSQR-VIDSIA-ELV-S 505 (692)
Q Consensus 432 l~~L~~L~l~~~~~~~~~~~i~~l~~-L~~L~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~-~~~~l~-~~~-~ 505 (692)
+++|+.|++++|.+..+|..+..+++ |+.| +++++....+|..+..++. |+.|+++++.-. ....+. .+. -
T Consensus 594 L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L---~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL---GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp TSEESEEECCSSCCSCCCTTSCEECTTCCEE---ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred CCcceEEECcCCccccchHHHhhccccCCEE---ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccc
Confidence 99999999999998888887777776 7666 7777765566666666654 999999877211 101111 000 0
Q ss_pred ccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCcc-------CccceeeeeccCCCCCchhhhh-
Q 048083 506 RSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFP-------RNLKIVTLSMSRLYWDPMEALE- 576 (692)
Q Consensus 506 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~-------~~L~~L~L~~~~l~~~~~~~l~- 576 (692)
.+++|+.|++++|.+.......+..+++|+.|+|+++. ..+|.++.... ++|+.|+|++|++.. .+..+.
T Consensus 671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~ 749 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRA 749 (876)
T ss_dssp CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGST
T ss_pred cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhh
Confidence 23389999999998775544455678899999999877 66776655431 289999999999885 445555
Q ss_pred -cCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccC------CCCcEEEecCCCccccceeecccccccC-CCcChh
Q 048083 577 -KLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNL------SSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLR 648 (692)
Q Consensus 577 -~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~------~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~ 648 (692)
.+++|+.|++++|.+.+ ++.....+++|+.|+|+++ .-...+|.....+++|+.|++++|.. . +|..+.
T Consensus 750 ~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp TTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 89999999999998876 4556678899999999763 33455666677789999999999765 7 888755
Q ss_pred hhhccCcEEEEecCc
Q 048083 649 NLAATLKDIVLTNMP 663 (692)
Q Consensus 649 ~l~~sL~~L~i~~c~ 663 (692)
++ |+.|++++|+
T Consensus 827 --~~-L~~LdLs~N~ 838 (876)
T 4ecn_A 827 --PQ-LYILDIADNP 838 (876)
T ss_dssp --SS-SCEEECCSCT
T ss_pred --CC-CCEEECCCCC
Confidence 56 9999999986
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=258.12 Aligned_cols=342 Identities=20% Similarity=0.187 Sum_probs=215.0
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
+..++++.+.. . .....+...|.++++|++|.+.++.+ ..+.+..| .++++|++|++++|.++.+++
T Consensus 27 ~~~l~~L~Ls~-n--~l~~~~~~~~~~l~~L~~L~Ls~n~i--------~~i~~~~~--~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 27 PFSTKNLDLSF-N--PLRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAY--QSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp CSSCCEEECCS-C--CCCEECTTTTTTCSSCCEEECTTCCC--------CEECTTTT--TTCTTCCEEECTTCCCCEECT
T ss_pred cccccEEEccC-C--ccCccChhHhhCCCCceEEECCCCcC--------CccCcccc--cCchhCCEEeCcCCcCCccCH
Confidence 34566666652 2 22223333445677777777776652 11334556 677777777777777766654
Q ss_pred hhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCcccee--cChhhhccccCceeecccccccccc-cccCCCc
Q 048083 381 HVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRY--LPDSIWKAKKLQHLYLNWIHSAISW-LNFSSLN 456 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~-~~i~~l~ 456 (692)
..|.++++|++|++++|.+..+|. .++++++|++|++++|.++. +|..++++++|++|++++|.+...+ ..++.++
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 446677777777777776666654 46667777777777776663 5666777777777777666554322 1122221
Q ss_pred cc------------------------------------------------------------------------------
Q 048083 457 NL------------------------------------------------------------------------------ 458 (692)
Q Consensus 457 ~L------------------------------------------------------------------------------ 458 (692)
+|
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 11
Q ss_pred ----------------------------ccccccccCCCccccccccc--------------------------------
Q 048083 459 ----------------------------QTLWGLSMGDDSLFNQTFDF-------------------------------- 478 (692)
Q Consensus 459 ----------------------------~~L~~~~~~~~~~~~~~~~l-------------------------------- 478 (692)
..|+.+++..+....+|..+
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~ 333 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEE
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCc
Confidence 11111122221111111111
Q ss_pred ----------ccccccccccccccchh----hHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-
Q 048083 479 ----------TKLASLRKLGVKCYSQR----VIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL- 543 (692)
Q Consensus 479 ----------~~l~~L~~L~l~~~~~~----~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~- 543 (692)
..+++|+.|+++++... .+..+..++ +|+.|++++|........ +..+++|+.|+++++.
T Consensus 334 ~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~----~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l 408 (570)
T 2z63_A 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT----SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNL 408 (570)
T ss_dssp SCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCS----CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEE
T ss_pred CCccccccccccCCCCCEEeCcCCccCccccccccccccC----ccCEEECCCCcccccccc-ccccCCCCEEEccCCcc
Confidence 22334444444433100 123333333 677777777655544333 6778888888888876
Q ss_pred ccc-c-ccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEE-
Q 048083 544 RMF-S-AKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEW- 620 (692)
Q Consensus 544 ~~~-p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l- 620 (692)
... | ..+..+ ++|++|++++|.+....+..+.++++|+.|++++|.+.+..++.....+++|+.|++++|. ++.+
T Consensus 409 ~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~ 486 (570)
T 2z63_A 409 KQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS 486 (570)
T ss_dssp ESCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEEC
T ss_pred ccccchhhhhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCC
Confidence 333 3 356677 8999999999998877777889999999999999988765677777889999999999875 5555
Q ss_pred EecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 621 TVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 621 ~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
|.....+++|++|++++|.--. .|..+..+++ |+.|++.+|+
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N~ 529 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS-LQKIWLHTNP 529 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSC
T ss_pred hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC-CcEEEecCCc
Confidence 5566788999999999975333 5566889999 9999999743
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=5.6e-27 Score=262.74 Aligned_cols=322 Identities=16% Similarity=0.189 Sum_probs=246.2
Q ss_pred cCCcc-ccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCC-CC--CCChhhhccc------ccc
Q 048083 320 IPSSF-LDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVY-KP--KLSDHVIGKL------LHL 389 (692)
Q Consensus 320 ~~~~~-~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~--~l~~~~~~~l------~~L 389 (692)
+|..+ |.++++|++|.+.++... ..+|..| .++++|++|++++|. ++ .+|.. ++.+ ++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~--------~~~p~~l--~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L 307 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNL--------TKLPTFL--KALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKI 307 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTC--------SSCCTTT--TTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTC
T ss_pred CchhhhhcccCCCCEEEecCCcCC--------ccChHHH--hcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCC
Confidence 44443 126899999999988622 2356778 899999999999998 77 47777 7776 899
Q ss_pred ceeeccCCCccccCc--cccCCCCCeEEecCCccce-ecChhhhccccCceeecccccccccccccCCCcc-cccccccc
Q 048083 390 SYLGLRSTFIDSLPN--SVGNLRYLETLDVKHTKLR-YLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNN-LQTLWGLS 465 (692)
Q Consensus 390 ~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~-L~~L~~~~ 465 (692)
++|++++|.+..+|. .++++++|++|++++|.++ .+| .+..+++|++|++++|.+..+|..++.+++ |+.| +
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L---~ 383 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL---S 383 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEE---E
T ss_pred CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEE---E
Confidence 999999999999998 8999999999999999998 889 889999999999999998888888777776 7666 7
Q ss_pred cCCCccccccccccccc--ccccccccccc--hhhHHHHHHH---hhccCCcceEEeeeccCCccccCCCCCCCCccEEE
Q 048083 466 MGDDSLFNQTFDFTKLA--SLRKLGVKCYS--QRVIDSIAEL---VSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELY 538 (692)
Q Consensus 466 ~~~~~~~~~~~~l~~l~--~L~~L~l~~~~--~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 538 (692)
++++....+|..+..++ +|+.|+++++. ...+..+... .-.+++|+.|++++|.+.......+..+++|+.|+
T Consensus 384 Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463 (636)
T ss_dssp CCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEE
T ss_pred ccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEE
Confidence 77776556676666654 89999998772 2222223200 00234899999999988765555566788999999
Q ss_pred Ecccc-ccccccccCccC-------ccceeeeeccCCCCCchhhhh--cCCCCCeeeecCCccCccEEEEecCCCCcccE
Q 048083 539 LRGAL-RMFSAKTSSFPR-------NLKIVTLSMSRLYWDPMEALE--KLCHLNILRIIGEAYEGKKMTCQAGGFPQLRV 608 (692)
Q Consensus 539 L~~~~-~~~p~~~~~l~~-------~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 608 (692)
++++. ..+|........ +|+.|+|++|.++.. +..+. .+++|+.|++++|.+.+ ++.....+++|+.
T Consensus 464 Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~ 540 (636)
T 4eco_A 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKG 540 (636)
T ss_dssp CCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCE
T ss_pred CCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCE
Confidence 99877 666655443312 899999999998853 34555 89999999999998875 5556678899999
Q ss_pred EEecc------CCCCcEEEecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 609 LKLWN------LSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 609 L~l~~------~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
|++++ +.-...+|...+.+++|+.|++++|.. + +|..+. ++ |+.|++++|+
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~-L~~L~Ls~N~ 598 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PN-ISVLDIKDNP 598 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TT-CCEEECCSCT
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--Cc-CCEEECcCCC
Confidence 99954 333456676777889999999999665 7 888765 66 9999999985
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=7.2e-27 Score=268.03 Aligned_cols=293 Identities=17% Similarity=0.142 Sum_probs=155.3
Q ss_pred CCcceEEEEeecCCCCC-CCChhhhcccc-ccceeeccCCCcc-ccCccccC--CCCCeEEecCCccce-ecChhhhccc
Q 048083 360 RGLVLLTVLDLEGVYKP-KLSDHVIGKLL-HLSYLGLRSTFID-SLPNSVGN--LRYLETLDVKHTKLR-YLPDSIWKAK 433 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~-~l~~~~~~~l~-~L~~L~l~~~~i~-~lp~~~~~--l~~L~~L~L~~~~l~-~lp~~~~~l~ 433 (692)
.++++|++|++++|.+. .+|.. +..+. +|++|++++|.+. .+|..+.. +++|++|++++|.++ .+|..+.+++
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred hcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 44444444444444443 33333 44443 4444444444332 23333333 445555555555555 4455555566
Q ss_pred cCceeeccccccc-ccccccCCCcccccccccccCCCccc-cccccccccccccccccccc--chhhHHHHHHHhhccCC
Q 048083 434 KLQHLYLNWIHSA-ISWLNFSSLNNLQTLWGLSMGDDSLF-NQTFDFTKLASLRKLGVKCY--SQRVIDSIAELVSRSTR 509 (692)
Q Consensus 434 ~L~~L~l~~~~~~-~~~~~i~~l~~L~~L~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~~~~~~~~ 509 (692)
+|++|++++|.+. ..|..++.+++|+.| ++..+... ..|..++.+++|+.|+++++ ....+..+..++ +
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L---~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~----~ 491 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDL---KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT----N 491 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEE---ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT----T
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEE---ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC----C
Confidence 6666666655554 344445444444444 44444322 33444555666666666555 112233333333 6
Q ss_pred cceEEeeeccCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhh-------------
Q 048083 510 LQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEA------------- 574 (692)
Q Consensus 510 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~------------- 574 (692)
|+.|++++|......+..+..+++|+.|++++|. +.+|..+..+ ++|+.|++++|.+.+..+..
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence 6666666665555555555566666666666655 3555555555 66666666666543221111
Q ss_pred ---------------------------------------------------------hhcCCCCCeeeecCCccCccEEE
Q 048083 575 ---------------------------------------------------------LEKLCHLNILRIIGEAYEGKKMT 597 (692)
Q Consensus 575 ---------------------------------------------------------l~~l~~L~~L~l~~~~~~~~~~~ 597 (692)
+..+++|+.|++++|.+.+ .++
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-~ip 649 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIP 649 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-CCC
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc-cCC
Confidence 2223455666666665544 233
Q ss_pred EecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 598 CQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 598 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
..++.+++|+.|+|+++.--..+|...+.+++|+.|++++|.-.. +|..+..+++ |+.|++++|+
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L~ls~N~ 715 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM-LTEIDLSNNN 715 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC-CSEEECCSSE
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC-CCEEECcCCc
Confidence 345566677777777654334666666667777777777755443 7777777777 7777777663
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.2e-26 Score=266.31 Aligned_cols=339 Identities=16% Similarity=0.119 Sum_probs=246.2
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
....+.+.+..+. -....+. +..+++|+.|.+.++.+. ...+..| ..+++|++|++++|.+....+
T Consensus 199 l~~L~~L~Ls~n~--l~~~~~~--l~~l~~L~~L~Ls~n~l~--------~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~ 264 (768)
T 3rgz_A 199 CVNLEFLDVSSNN--FSTGIPF--LGDCSALQHLDISGNKLS--------GDFSRAI--STCTELKLLNISSNQFVGPIP 264 (768)
T ss_dssp CTTCCEEECCSSC--CCSCCCB--CTTCCSCCEEECCSSCCC--------SCHHHHT--TTCSSCCEEECCSSCCEESCC
T ss_pred CCcCCEEECcCCc--CCCCCcc--cccCCCCCEEECcCCcCC--------CcccHHH--hcCCCCCEEECCCCcccCccC
Confidence 3455566555322 1111222 456777777777776621 1345666 777777777777777763333
Q ss_pred hhhccccccceeeccCCCcc-ccCccccCC-CCCeEEecCCccce-ecChhhhccccCceeeccccccc-ccccc-cCCC
Q 048083 381 HVIGKLLHLSYLGLRSTFID-SLPNSVGNL-RYLETLDVKHTKLR-YLPDSIWKAKKLQHLYLNWIHSA-ISWLN-FSSL 455 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l-~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~-i~~l 455 (692)
. . .+++|++|++++|.+. .+|..+.++ ++|++|++++|.++ .+|..++++++|++|++++|.+. .+|.. +..+
T Consensus 265 ~-~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 265 P-L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp C-C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred c-c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 3 2 6777777888777775 667666554 78888888888777 56777888888888888888776 55544 6666
Q ss_pred cccccccccccCCCccc-cccccccccc-ccccccccccc--hhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCC
Q 048083 456 NNLQTLWGLSMGDDSLF-NQTFDFTKLA-SLRKLGVKCYS--QRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQ 531 (692)
Q Consensus 456 ~~L~~L~~~~~~~~~~~-~~~~~l~~l~-~L~~L~l~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 531 (692)
++|+.| +++.+... ..|..+..++ +|+.|+++.+. ...+..+.. ..+++|+.|++++|......+..+..+
T Consensus 343 ~~L~~L---~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 343 RGLKVL---DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp TTCCEE---ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred CCCCEE---eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh--cccCCccEEECCCCccccccCHHHhcC
Confidence 665555 66666532 4555666776 78888887661 122222221 013478999999988777777788899
Q ss_pred CCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEE
Q 048083 532 ANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVL 609 (692)
Q Consensus 532 ~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 609 (692)
++|+.|+++++. ..+|..+..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+.+. .+.....+++|+.|
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWI 495 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEE
T ss_pred CCCCEEECcCCcccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEE
Confidence 999999999887 5778888888 8999999999999888888899999999999999888753 34456788999999
Q ss_pred EeccCCCCcEEEecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 610 KLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 610 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
++++|.-...+|...+.+++|+.|++++|.... +|..+..+++ |+.|++++|+
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~ 549 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNL 549 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT-CCEEECCSSE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC-CCEEECCCCc
Confidence 999977555778778889999999999987666 9999999999 9999999774
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=6.7e-27 Score=262.09 Aligned_cols=325 Identities=16% Similarity=0.170 Sum_probs=257.7
Q ss_pred ccCCcccceEEEecCccccC-------c--chhhhhHHHhhhccC--CcceEEEEeecCCCCC-CCChhhhcccccccee
Q 048083 325 LDRSCHLRTYVAFDNRIYCS-------P--AIEISTFLDKIISNR--GLVLLTVLDLEGVYKP-KLSDHVIGKLLHLSYL 392 (692)
Q Consensus 325 ~~~~~~lr~l~~~~~~~~~~-------~--~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~-~l~~~~~~~l~~L~~L 392 (692)
+.++++|++|.+.++.+... | .......+|..+ . ++++|++|++++|.+. .+|.. ++++++|++|
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l--~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL--KWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC--CGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhh--hhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEE
Confidence 45799999999999883320 0 000001156666 6 9999999999999976 67777 9999999999
Q ss_pred eccCCC-cc--ccCccccCC------CCCeEEecCCccceecCh--hhhccccCceeeccccccc-ccccccCCCccccc
Q 048083 393 GLRSTF-ID--SLPNSVGNL------RYLETLDVKHTKLRYLPD--SIWKAKKLQHLYLNWIHSA-ISWLNFSSLNNLQT 460 (692)
Q Consensus 393 ~l~~~~-i~--~lp~~~~~l------~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~-~~~~~i~~l~~L~~ 460 (692)
++++|. +. .+|..++++ ++|++|++++|.++.+|. .++++++|++|++++|.+. .+| .++.+++|+.
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 999998 86 489888876 999999999999999998 8999999999999999998 777 6666666655
Q ss_pred ccccccCCCcccccccccccccc-cccccccccc-hhhHHHHHHHhhccCCcceEEeeeccCCccccCCCC-------CC
Q 048083 461 LWGLSMGDDSLFNQTFDFTKLAS-LRKLGVKCYS-QRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFK-------AQ 531 (692)
Q Consensus 461 L~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-------~~ 531 (692)
| +++.+....+|..+..+++ |+.|+++++. ..++..+... .+++|+.|++++|.+....+..+. .+
T Consensus 358 L---~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 358 L---NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK--SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp E---ECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT--CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred E---ECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhc--ccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 5 8888876677778999999 9999999872 2222222111 123799999999988887766666 77
Q ss_pred CCccEEEEcccc-cccccccc-CccCccceeeeeccCCCCCchhhhhcCC-------CCCeeeecCCccCccEEEEecC-
Q 048083 532 ANLQELYLRGAL-RMFSAKTS-SFPRNLKIVTLSMSRLYWDPMEALEKLC-------HLNILRIIGEAYEGKKMTCQAG- 601 (692)
Q Consensus 532 ~~L~~L~L~~~~-~~~p~~~~-~l~~~L~~L~L~~~~l~~~~~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~~- 601 (692)
++|+.|+++++. ..+|..+. .+ ++|++|+|++|.++..+...+..+. +|+.|++++|.+. .++....
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~ 509 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTG-SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRA 509 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTT-CCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGST
T ss_pred CCCCEEECcCCccCcCCHHHHccC-CCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhh
Confidence 899999999987 77776544 46 8999999999999865544444433 9999999999887 3454554
Q ss_pred -CCCcccEEEeccCCCCcEEEecCCCccccceeeccc------ccccC-CCcChhhhhccCcEEEEecCc
Q 048083 602 -GFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRS------CNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 602 -~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~------c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
.+++|+.|+++++. ++.+|.....+++|+.|++++ |.... +|..+..+++ |+.|++++|.
T Consensus 510 ~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~ 577 (636)
T 4eco_A 510 TTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS-LTQLQIGSND 577 (636)
T ss_dssp TTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS-CCEEECCSSC
T ss_pred ccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC-CCEEECCCCc
Confidence 89999999999864 666888888899999999954 44455 9999999999 9999999986
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.1e-26 Score=239.32 Aligned_cols=302 Identities=17% Similarity=0.175 Sum_probs=217.2
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSV 406 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~ 406 (692)
.+++++.|.+.++.... ++ .+ ..+++|++|++++|.++.+++ +..+++|++|++++|.+..+| .+
T Consensus 42 ~l~~L~~L~l~~~~i~~---------~~-~~--~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~ 106 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS---------IQ-GI--EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-AL 106 (347)
T ss_dssp HHTTCSEEECCSSCCCC---------CT-TG--GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred hcccccEEEEeCCcccc---------ch-hh--hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HH
Confidence 56777777777766211 12 25 677888888888888777665 777888888888888777775 37
Q ss_pred cCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCcccccccccccCCCccccccccccccccccc
Q 048083 407 GNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRK 486 (692)
Q Consensus 407 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~ 486 (692)
.++++|++|++++|.++.+|. +..+++|++|++++|.....+..+..+++|+.| +++.+.....+ .+..+++|+.
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L---~l~~~~~~~~~-~~~~l~~L~~ 181 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVT-PIANLTDLYS 181 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE---ECCSSCCCCCG-GGGGCTTCSE
T ss_pred cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEE---EecCCCcCCch-hhccCCCCCE
Confidence 778888888888887777765 777888888888887655444445555555555 55555433322 3677788888
Q ss_pred ccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeecc
Q 048083 487 LGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMS 565 (692)
Q Consensus 487 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~ 565 (692)
|+++++.......+.. +++|+.|++++|....... +..+++|+.|+++++. ..++. +..+ ++|++|++++|
T Consensus 182 L~l~~n~l~~~~~~~~----l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l-~~L~~L~l~~n 253 (347)
T 4fmz_A 182 LSLNYNQIEDISPLAS----LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANL-SQLTWLEIGTN 253 (347)
T ss_dssp EECTTSCCCCCGGGGG----CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTC-TTCCEEECCSS
T ss_pred EEccCCcccccccccC----CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcC-CCCCEEECCCC
Confidence 8887762211111333 4489999999987666543 7788899999999887 55554 6677 89999999999
Q ss_pred CCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccCCCc
Q 048083 566 RLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLKPPE 645 (692)
Q Consensus 566 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~p~ 645 (692)
.+... +.+..+++|+.|++++|.+... .....+++|+.|++++|.--...+.....+++|+.|++++|+...++.
T Consensus 254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 254 QISDI--NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred ccCCC--hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 88764 5688899999999999887653 245678999999999875433334445568999999999987333544
Q ss_pred ChhhhhccCcEEEEecCc
Q 048083 646 GLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 646 ~~~~l~~sL~~L~i~~c~ 663 (692)
+..+++ |+.|++++|+
T Consensus 329 -~~~l~~-L~~L~l~~N~ 344 (347)
T 4fmz_A 329 -LASLSK-MDSADFANQV 344 (347)
T ss_dssp -GGGCTT-CSEESSSCC-
T ss_pred -hhhhhc-cceeehhhhc
Confidence 788898 9999999886
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=7.9e-26 Score=253.49 Aligned_cols=297 Identities=17% Similarity=0.083 Sum_probs=192.5
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
+..++++.+.. . .....+...|.++++|++|.+.++.+ ....+..| .++++|++|++++|.+..+++
T Consensus 32 ~~~l~~L~Ls~-n--~i~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 32 PNSTECLEFSF-N--VLPTIQNTTFSRLINLTFLDLTRCQI--------YWIHEDTF--QSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp CTTCCEEECTT-C--CCSEECTTTSTTCTTCSEEECTTCCC--------CEECTTTT--TTCTTCCEEECTTCCCSEECT
T ss_pred CCcCcEEEccC-C--ccCcCChhHhccCccceEEECCCCcc--------ceeChhhc--cCccccCeeeCCCCcccccCh
Confidence 45677777773 3 22334444567899999999988762 22456778 899999999999999887655
Q ss_pred hhhccccccceeeccCCCcccc-CccccCCCCCeEEecCCccceecC-hhhhccccCceeeccccccccc-ccccCCCcc
Q 048083 381 HVIGKLLHLSYLGLRSTFIDSL-PNSVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQHLYLNWIHSAIS-WLNFSSLNN 457 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~-~~~i~~l~~ 457 (692)
..++++++|++|++++|.+..+ |..++++++|++|++++|.++.++ ..+..+++|++|++++|.+... +..++.+++
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 4489999999999999988887 567889999999999999888662 3344589999999999988755 455677777
Q ss_pred cccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhh-------------------------cc--CCc
Q 048083 458 LQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVS-------------------------RS--TRL 510 (692)
Q Consensus 458 L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~-------------------------~~--~~L 510 (692)
|+.+ .++++.+.....++......+|+.|++.++. .....+..+.. .+ .+|
T Consensus 179 L~~l-~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 179 ATNL-SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ-NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp CCSE-EEECTTCCCCEECTTTTTTCEEEEEECTTCS-CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred ccee-EEecCCCccCccChhHhhhccccccccCCch-hHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 7633 2466666544444444444567777776552 22222222210 00 145
Q ss_pred ceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCC
Q 048083 511 QSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGE 589 (692)
Q Consensus 511 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~ 589 (692)
+.|++++|.........+..+++|++|+++++. ..+|.++..+ ++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL-STLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSC-TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhccc-ccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 666666666665555556666677777776665 5566666666 66677777666666554455566666666666655
Q ss_pred ccCccEEEEecCCCCcccEEEecc
Q 048083 590 AYEGKKMTCQAGGFPQLRVLKLWN 613 (692)
Q Consensus 590 ~~~~~~~~~~~~~~~~L~~L~l~~ 613 (692)
.+.+.........+++|+.|++++
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCS
T ss_pred CcccccchhhhhccCcCCEEECCC
Confidence 443222222233445555555544
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.2e-26 Score=262.17 Aligned_cols=325 Identities=15% Similarity=0.136 Sum_probs=251.7
Q ss_pred ccCCcccceEEEecCccccC--c-------chhhhhHHHhhhccC--CcceEEEEeecCCCCC-CCChhhhcccccccee
Q 048083 325 LDRSCHLRTYVAFDNRIYCS--P-------AIEISTFLDKIISNR--GLVLLTVLDLEGVYKP-KLSDHVIGKLLHLSYL 392 (692)
Q Consensus 325 ~~~~~~lr~l~~~~~~~~~~--~-------~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~-~l~~~~~~~l~~L~~L 392 (692)
+.++++|+.|.+.++.+... + .......+|..+ . ++++|++|+|++|.+. .+|.. ++++++|++|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l--~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L 520 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL--SWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSL 520 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC--CGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhh--hhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEE
Confidence 56899999999999884320 0 000011245554 4 9999999999999865 77777 9999999999
Q ss_pred eccCCC-ccc--cCccccCCC-------CCeEEecCCccceecCh--hhhccccCceeecccccccccccccCCCccccc
Q 048083 393 GLRSTF-IDS--LPNSVGNLR-------YLETLDVKHTKLRYLPD--SIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQT 460 (692)
Q Consensus 393 ~l~~~~-i~~--lp~~~~~l~-------~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~ 460 (692)
++++|. +.. +|..++++. +|++|++++|.++.+|. .+.++++|++|++++|.+..+| .++.+++|+.
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD 599 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceE
Confidence 999997 764 887776665 99999999999999999 9999999999999999998777 6666666665
Q ss_pred ccccccCCCcccccccccccccc-cccccccccc-hhhHHHHHHHhhccCCcceEEeeeccCCcccc---CCCC--CCCC
Q 048083 461 LWGLSMGDDSLFNQTFDFTKLAS-LRKLGVKCYS-QRVIDSIAELVSRSTRLQSLKLVYAWRDDYSD---IPFK--AQAN 533 (692)
Q Consensus 461 L~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~--~~~~ 533 (692)
| +++.+....+|..+..+++ |+.|+++++. ..++..+.... .++|+.|++++|.+....+ ..+. .+++
T Consensus 600 L---~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~--~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 600 L---KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS--VYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp E---ECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC--SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred E---ECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccc--cCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 5 7888876677878999999 9999999872 22222222221 1249999999998765432 1222 3458
Q ss_pred ccEEEEcccc-cccccccc-CccCccceeeeeccCCCCCchhhhhc-------CCCCCeeeecCCccCccEEEEecC--C
Q 048083 534 LQELYLRGAL-RMFSAKTS-SFPRNLKIVTLSMSRLYWDPMEALEK-------LCHLNILRIIGEAYEGKKMTCQAG--G 602 (692)
Q Consensus 534 L~~L~L~~~~-~~~p~~~~-~l~~~L~~L~L~~~~l~~~~~~~l~~-------l~~L~~L~l~~~~~~~~~~~~~~~--~ 602 (692)
|+.|++++|. ..+|.++. .+ ++|+.|+|++|.+...+...+.. +++|+.|++++|.+. .++.... .
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l-~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~ 751 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATG-SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATT 751 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTT-CCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTT
T ss_pred cCEEEccCCcCCccCHHHHccC-CCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhcc
Confidence 9999999987 77776665 56 89999999999988544433332 349999999999887 3454554 8
Q ss_pred CCcccEEEeccCCCCcEEEecCCCccccceeeccc------ccccC-CCcChhhhhccCcEEEEecCc
Q 048083 603 FPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRS------CNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 603 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~------c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
+++|+.|+|+++ .+..+|.....+++|+.|++++ |.... +|..+.++++ |+.|++++|.
T Consensus 752 l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~-L~~L~Ls~N~ 817 (876)
T 4ecn_A 752 LPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS-LIQLQIGSND 817 (876)
T ss_dssp CTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS-CCEEECCSSC
T ss_pred CCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC-CCEEECCCCC
Confidence 999999999985 4667888888899999999987 44445 9999999999 9999999986
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=5.8e-25 Score=237.41 Aligned_cols=344 Identities=18% Similarity=0.206 Sum_probs=250.2
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
+..++++.+..+. ....+...|.++++|++|.+.++.... .+.+..| .++++|++|++++|.+..+++
T Consensus 29 ~~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~-------~i~~~~~--~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 29 PAHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVEQQTPGL-------VIRNNTF--RGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp CTTCCEEECCSSC---CCEECTTTTSSCTTCCEEECCCCSTTC-------EECTTTT--TTCTTCCEEECTTCTTCEECT
T ss_pred CCccCEEEecCCc---cCcCChhHhccCccccEEECcCCcccc-------eECcccc--cccccCCEEeCCCCccCccCh
Confidence 4667888877332 223334445688999999998876211 1345678 899999999999999887644
Q ss_pred hhhccccccceeeccCCCccc-cCcc--ccCCCCCeEEecCCccceec-Chh-hhccccCceeeccccccccc-ccccCC
Q 048083 381 HVIGKLLHLSYLGLRSTFIDS-LPNS--VGNLRYLETLDVKHTKLRYL-PDS-IWKAKKLQHLYLNWIHSAIS-WLNFSS 454 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~L~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~~~~-~~~i~~ 454 (692)
..++++++|++|++++|.+.. +|.. ++++++|++|++++|.++.+ |.. +.++++|++|++++|.+... +..+..
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 448999999999999998875 3433 78899999999999988866 554 78899999999999988754 344444
Q ss_pred CcccccccccccCCCccccccc---------cccccccccccccccc--chhhHHHHHHHhhccCCcceEEeeeccCCcc
Q 048083 455 LNNLQTLWGLSMGDDSLFNQTF---------DFTKLASLRKLGVKCY--SQRVIDSIAELVSRSTRLQSLKLVYAWRDDY 523 (692)
Q Consensus 455 l~~L~~L~~~~~~~~~~~~~~~---------~l~~l~~L~~L~l~~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 523 (692)
+.. ..|..++++.+....++. .+..+++|+.|+++++ ....+..+.... ..++|+.|++++|.....
T Consensus 177 l~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 177 FQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GTT-CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT-TTCCEEEEECTTCTTTSC
T ss_pred ccc-ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc-cccceeeEeecccccccc
Confidence 421 234444666664322221 2345689999999988 344555555542 224899999998843321
Q ss_pred ----------ccCCCC--CCCCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCC
Q 048083 524 ----------SDIPFK--AQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGE 589 (692)
Q Consensus 524 ----------~~~~l~--~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~ 589 (692)
....+. ..++|+.|+++++. ...|.++..+ ++|++|+|++|.+....+..+..+++|+.|++++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 111122 23689999999987 5567778888 99999999999999877778999999999999999
Q ss_pred ccCccEEEEecCCCCcccEEEeccCCCCcEE-EecCCCccccceeecccccccC-CCc-ChhhhhccCcEEEEecCc
Q 048083 590 AYEGKKMTCQAGGFPQLRVLKLWNLSSLEEW-TVQEAAMPRLRELEIRSCNKLK-PPE-GLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 590 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~-~p~-~~~~l~~sL~~L~i~~c~ 663 (692)
.+.. ..+..+..+++|+.|+++++. ++.+ +.....+++|++|++++|. ++ +|. .+..+++ |+.|++++++
T Consensus 334 ~l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~-L~~L~l~~N~ 406 (455)
T 3v47_A 334 FLGS-IDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTS-LQKIWLHTNP 406 (455)
T ss_dssp CCCE-ECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT-CCEEECCSSC
T ss_pred ccCC-cChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCc-ccEEEccCCC
Confidence 8743 223456789999999999864 6666 5566789999999999964 66 555 5688999 9999998643
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=246.94 Aligned_cols=315 Identities=19% Similarity=0.162 Sum_probs=182.8
Q ss_pred cccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccC
Q 048083 329 CHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGN 408 (692)
Q Consensus 329 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~ 408 (692)
++++.|.+.++.+.. ..+..| ..+++|++|++++|.++.+++..|.++++|++|++++|.+..+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~--------~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISE--------LWTSDI--LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCC--------CCHHHH--TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--C
T ss_pred ccccEEECCCCcccc--------cChhhc--cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--c
Confidence 666777766665211 234556 6677777777777776655443366777777777777766666654 5
Q ss_pred CCCCeEEecCCcccee--cChhhhccccCceeecccccccc--------------------------cccccCCCc----
Q 048083 409 LRYLETLDVKHTKLRY--LPDSIWKAKKLQHLYLNWIHSAI--------------------------SWLNFSSLN---- 456 (692)
Q Consensus 409 l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~--------------------------~~~~i~~l~---- 456 (692)
+++|++|++++|.++. +|..++++++|++|++++|.+.. .|..+..+.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceE
Confidence 6777777777776664 45666667777776666665432 122222211
Q ss_pred -------------------ccccccc------------------------------------------------------
Q 048083 457 -------------------NLQTLWG------------------------------------------------------ 463 (692)
Q Consensus 457 -------------------~L~~L~~------------------------------------------------------ 463 (692)
.+..|+.
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 0111111
Q ss_pred ---cccCCCccc-cccccc-----ccccccccccccccchhhH-HHHHHH---h------------------hccCCcce
Q 048083 464 ---LSMGDDSLF-NQTFDF-----TKLASLRKLGVKCYSQRVI-DSIAEL---V------------------SRSTRLQS 512 (692)
Q Consensus 464 ---~~~~~~~~~-~~~~~l-----~~l~~L~~L~l~~~~~~~~-~~l~~~---~------------------~~~~~L~~ 512 (692)
++++++... .+|..+ +.+++|+.+++..+...++ ..+..+ . ..+++|++
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~ 328 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccE
Confidence 112221111 233333 4555555555544422222 233332 1 23445666
Q ss_pred EEeeeccCCccccCCCCCCCCccEEEEcccc-c---cccccccCccCccceeeeeccCCCC-CchhhhhcCCCCCeeeec
Q 048083 513 LKLVYAWRDDYSDIPFKAQANLQELYLRGAL-R---MFSAKTSSFPRNLKIVTLSMSRLYW-DPMEALEKLCHLNILRII 587 (692)
Q Consensus 513 L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~---~~p~~~~~l~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~l~ 587 (692)
|++++|......+..+..+++|+.|+++++. . .+|..+..+ ++|+.|++++|.+.. .+...+..+++|+.|+++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 6666665555455555666666666666655 2 334445555 666666666666655 222235556666666666
Q ss_pred CCccCccEEEEecCCC-CcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcC-hhhhhccCcEEEEecCc
Q 048083 588 GEAYEGKKMTCQAGGF-PQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEG-LRNLAATLKDIVLTNMP 663 (692)
Q Consensus 588 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~-~~~l~~sL~~L~i~~c~ 663 (692)
+|.+.+.. ...+ ++|+.|++++| .++.+|.....+++|++|++++| .++ +|.. +..+++ |+.|++++++
T Consensus 408 ~N~l~~~~----~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~-L~~L~l~~N~ 479 (520)
T 2z7x_B 408 SNILTDTI----FRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTS-LQKIWLHTNP 479 (520)
T ss_dssp SSCCCGGG----GGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTT-CCEEECCSSC
T ss_pred CCCCCcch----hhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCc-ccEEECcCCC
Confidence 66554321 1122 68888888875 57777776678999999999996 567 8876 888999 9999998754
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.8e-25 Score=250.58 Aligned_cols=343 Identities=17% Similarity=0.113 Sum_probs=191.5
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
....+.+.+..+ .........|.++++|++|.+.++.+ ....+..| .++++|++|++++|.++.+++
T Consensus 56 l~~L~~L~Ls~n---~i~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~--~~l~~L~~L~L~~n~i~~l~~ 122 (606)
T 3t6q_A 56 LINLTFLDLTRC---QIYWIHEDTFQSQHRLDTLVLTANPL--------IFMAETAL--SGPKALKHLFFIQTGISSIDF 122 (606)
T ss_dssp CTTCSEEECTTC---CCCEECTTTTTTCTTCCEEECTTCCC--------SEECTTTT--SSCTTCCEEECTTSCCSCGGG
T ss_pred CccceEEECCCC---ccceeChhhccCccccCeeeCCCCcc--------cccChhhh--cccccccEeeccccCcccCCc
Confidence 355666666622 22223334455788888888887762 12345667 788888888888888777644
Q ss_pred hhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceec-ChhhhccccCc--eeecccccccccccccCC--
Q 048083 381 HVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQ--HLYLNWIHSAISWLNFSS-- 454 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~--~L~l~~~~~~~~~~~i~~-- 454 (692)
..++++++|++|++++|.+..++ +.+..+++|++|++++|.++.+ |..+..+++|+ .|++++|.+...++....
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~ 202 (606)
T 3t6q_A 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence 44777888888888888777653 3344477888888888877755 45567777777 666666655433221110
Q ss_pred -----------------------------------------------------------------------Ccccccccc
Q 048083 455 -----------------------------------------------------------------------LNNLQTLWG 463 (692)
Q Consensus 455 -----------------------------------------------------------------------l~~L~~L~~ 463 (692)
+..+..|+.
T Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence 222333444
Q ss_pred cccCCCcccccccccccccccccccccccc--hhhHHHHHHHhhccCCcceEEeeeccCCcc-ccCCCCCCCCccEEEEc
Q 048083 464 LSMGDDSLFNQTFDFTKLASLRKLGVKCYS--QRVIDSIAELVSRSTRLQSLKLVYAWRDDY-SDIPFKAQANLQELYLR 540 (692)
Q Consensus 464 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~L~ 540 (692)
++++++....+|..+..+++|+.|+++++. ...+..+..++ +|+.|++++|..... ....+..+++|+.|+++
T Consensus 283 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~----~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP----SLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358 (606)
T ss_dssp EECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT----TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred EeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC----cCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence 466666555556666777777777776651 11122333333 666666666644322 22234555555555555
Q ss_pred ccc-ccc---cccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEE--------------------
Q 048083 541 GAL-RMF---SAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKM-------------------- 596 (692)
Q Consensus 541 ~~~-~~~---p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-------------------- 596 (692)
++. ... |..+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+.+...
T Consensus 359 ~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 359 HDDIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp SSCCCEEEESTTTTTTC-TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCccccccCcchhcccC-CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 543 111 3334444 455555555554444333344444444444444443322111
Q ss_pred ----EEecCCCCcccEEEeccCCCCcE--EE--ecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 597 ----TCQAGGFPQLRVLKLWNLSSLEE--WT--VQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 597 ----~~~~~~~~~L~~L~l~~~~~l~~--l~--~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
+.....+++|+.|+++++. +.. ++ .....+++|+.|++++|.... .|..+..+++ |++|++++|.
T Consensus 438 ~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~ 511 (606)
T 3t6q_A 438 DISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNR 511 (606)
T ss_dssp BTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEECCSSC
T ss_pred CCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCccCccChhhhccccC-CCEEECCCCc
Confidence 1123345556666665543 221 11 123456777777777765444 5677777777 8888887774
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=3.1e-25 Score=234.18 Aligned_cols=303 Identities=17% Similarity=0.153 Sum_probs=242.9
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-c
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-S 405 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~ 405 (692)
.+++++.+.+.++.+ ..+.+..| ..+++|++|++++|.+..+++..+..+++|++|++++|.+..+|+ .
T Consensus 43 ~l~~l~~l~l~~~~l--------~~l~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM--------RKLPAALL--DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112 (390)
T ss_dssp GGCCCSEEEEESCEE--------SEECTHHH--HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCceEEEecCCch--------hhCChhHh--cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH
Confidence 578999999988772 22455667 889999999999999998877559999999999999999988864 5
Q ss_pred ccCCCCCeEEecCCccceecChh-hhccccCceeeccccccccccc-ccCCCcccccccccccCCCcccccccccccccc
Q 048083 406 VGNLRYLETLDVKHTKLRYLPDS-IWKAKKLQHLYLNWIHSAISWL-NFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLAS 483 (692)
Q Consensus 406 ~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~ 483 (692)
++++++|++|++++|.++.+|.. +.++++|++|++++|.+..++. .+..+++|+.| +++.+..... .+..+++
T Consensus 113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L---~l~~n~l~~~--~~~~l~~ 187 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL---QLSSNRLTHV--DLSLIPS 187 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE---ECCSSCCSBC--CGGGCTT
T ss_pred hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE---ECCCCcCCcc--ccccccc
Confidence 78999999999999999999876 5889999999999998886643 46666666666 7777653332 4677889
Q ss_pred cccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeee
Q 048083 484 LRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTL 562 (692)
Q Consensus 484 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L 562 (692)
|+.|+++++.-.. + ....+|+.|++++|....... ..+++|+.|+++++. ... .++..+ ++|++|++
T Consensus 188 L~~L~l~~n~l~~---~----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~-~~l~~l-~~L~~L~L 255 (390)
T 3o6n_A 188 LFHANVSYNLLST---L----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT-AWLLNY-PGLVEVDL 255 (390)
T ss_dssp CSEEECCSSCCSE---E----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC-GGGGGC-TTCSEEEC
T ss_pred cceeecccccccc---c----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc-HHHcCC-CCccEEEC
Confidence 9999988762110 1 112489999999997766532 234789999999988 443 477788 99999999
Q ss_pred eccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC
Q 048083 563 SMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK 642 (692)
Q Consensus 563 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 642 (692)
++|.+....+..+..+++|+.|++++|.+.. ++.....+++|+.|+++++ .+..+|.....+++|+.|++++|. +.
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~ 331 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IV 331 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CC
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cc
Confidence 9999998778889999999999999998764 4545567999999999986 577777666778999999999976 55
Q ss_pred -CCcChhhhhccCcEEEEecCc
Q 048083 643 -PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 643 -~p~~~~~l~~sL~~L~i~~c~ 663 (692)
+| +..+++ |+.|++++++
T Consensus 332 ~~~--~~~~~~-L~~L~l~~N~ 350 (390)
T 3o6n_A 332 TLK--LSTHHT-LKNLTLSHND 350 (390)
T ss_dssp CCC--CCTTCC-CSEEECCSSC
T ss_pred eeC--chhhcc-CCEEEcCCCC
Confidence 65 567888 9999999987
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=6.6e-25 Score=238.32 Aligned_cols=292 Identities=20% Similarity=0.174 Sum_probs=202.6
Q ss_pred CcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc-c
Q 048083 328 SCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS-V 406 (692)
Q Consensus 328 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~-~ 406 (692)
.++++.|.+.++.+ ....+..| .++++|++|+|++|.+..+++..|.++++|++|+|++|.+..+|.. +
T Consensus 31 ~~~l~~L~L~~n~l--------~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 31 PTETRLLDLGKNRI--------KTLNQDEF--ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100 (477)
T ss_dssp CTTCSEEECCSSCC--------CEECTTTT--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred CCCCcEEECCCCcc--------ceECHhHc--cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence 35666666666652 11234556 6667777777777766655433366677777777777666666643 4
Q ss_pred cCCCCCeEEecCCccceec-ChhhhccccCceeecccccccccccccCCCcccccccccccCCCcccccccccccccccc
Q 048083 407 GNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLR 485 (692)
Q Consensus 407 ~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~ 485 (692)
.++++|++|+|++|.++.+ |..+.++++|++|++++|.+..++. ..+..+++|+
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~~~l~~L~ 155 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-------------------------RAFSGLNSLE 155 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-------------------------TSSTTCTTCC
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-------------------------hhccCCCCCC
Confidence 6667777777777766644 4456666677777766665543221 1344445555
Q ss_pred ccccccc--chhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceee
Q 048083 486 KLGVKCY--SQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVT 561 (692)
Q Consensus 486 ~L~l~~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~ 561 (692)
.|+++++ .......+..+. +|+.|++++|.........+..+++|+.|+++++. ..+|...... .+|++|+
T Consensus 156 ~L~l~~n~l~~~~~~~l~~l~----~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~ 230 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALSHLH----GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLS 230 (477)
T ss_dssp EEEEESCCCSSCCHHHHTTCT----TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEE
T ss_pred EEECCCCcCcccChhHhcccC----CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC-ccccEEE
Confidence 5555544 111223344444 99999999998888777789999999999999876 6666666666 7999999
Q ss_pred eeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEE-EecCCCccccceeecccccc
Q 048083 562 LSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEW-TVQEAAMPRLRELEIRSCNK 640 (692)
Q Consensus 562 L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~ 640 (692)
|++|.+.......+..+++|+.|++++|.+.. ..+..+..+++|+.|+|+++ .+..+ +.....+++|+.|++++| .
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~ 307 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-Q 307 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-C
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCCc-cChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-c
Confidence 99999998777789999999999999998763 11223567899999999985 46655 445567899999999996 4
Q ss_pred cC-CCc-ChhhhhccCcEEEEecCc
Q 048083 641 LK-PPE-GLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 641 l~-~p~-~~~~l~~sL~~L~i~~c~ 663 (692)
++ +|. .+..+++ |+.|++.++|
T Consensus 308 l~~~~~~~~~~l~~-L~~L~l~~N~ 331 (477)
T 2id5_A 308 LTTLEESVFHSVGN-LETLILDSNP 331 (477)
T ss_dssp CSCCCGGGBSCGGG-CCEEECCSSC
T ss_pred CceeCHhHcCCCcc-cCEEEccCCC
Confidence 66 554 5678899 9999998654
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=6.5e-25 Score=243.02 Aligned_cols=336 Identities=18% Similarity=0.155 Sum_probs=199.1
Q ss_pred cceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChh
Q 048083 302 LFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDH 381 (692)
Q Consensus 302 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~ 381 (692)
..++++.+..+. ....+...|..+++|++|.+.++.+. ...+..| ..+++|++|++++|.+..+++.
T Consensus 26 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 26 AAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSRIN--------TIEGDAF--YSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSCCC--------EECTTTT--TTCTTCCEEECTTSCCCSCCHH
T ss_pred CCccEEECcCCc---cCccChhhhhcCCcccEEECCCCCcC--------ccChhhc--cccccCCEEECCCCccCccCHH
Confidence 466777776332 22233334567888888888887632 2345667 7888888888888888877776
Q ss_pred hhccccccceeeccCCCccc--cCccccCCCCCeEEecCCcc-ceecC-hhhhccccCceeecccccccc-cccccCCCc
Q 048083 382 VIGKLLHLSYLGLRSTFIDS--LPNSVGNLRYLETLDVKHTK-LRYLP-DSIWKAKKLQHLYLNWIHSAI-SWLNFSSLN 456 (692)
Q Consensus 382 ~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~i~~l~ 456 (692)
.++++++|++|++++|.+.. .|..++++++|++|++++|. +..+| ..+.++++|++|++++|.+.. .|..++.++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 68888888888888888764 35667888888888888885 56665 467778888888888777663 444555444
Q ss_pred ccccc---------------------cccccCCCccccc---ccc-ccccc-----------------------------
Q 048083 457 NLQTL---------------------WGLSMGDDSLFNQ---TFD-FTKLA----------------------------- 482 (692)
Q Consensus 457 ~L~~L---------------------~~~~~~~~~~~~~---~~~-l~~l~----------------------------- 482 (692)
+|+.| +.++++++..... |.. ...++
T Consensus 173 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred cCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 33322 2223332221110 000 00011
Q ss_pred ----------------------------------------------------------cccccccccc-chhhHHHHHHH
Q 048083 483 ----------------------------------------------------------SLRKLGVKCY-SQRVIDSIAEL 503 (692)
Q Consensus 483 ----------------------------------------------------------~L~~L~l~~~-~~~~~~~l~~~ 503 (692)
+|+.|+++++ ...++..+.
T Consensus 253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~-- 330 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS-- 330 (549)
T ss_dssp CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH--
T ss_pred ccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH--
Confidence 1111222111 001111111
Q ss_pred hhccCCcceEEeeeccCCccc---cCCCCCCCCccEEEEcccc-cccc---ccccCccCccceeeeeccCCCCCchhhhh
Q 048083 504 VSRSTRLQSLKLVYAWRDDYS---DIPFKAQANLQELYLRGAL-RMFS---AKTSSFPRNLKIVTLSMSRLYWDPMEALE 576 (692)
Q Consensus 504 ~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~L~~~~-~~~p---~~~~~l~~~L~~L~L~~~~l~~~~~~~l~ 576 (692)
+.+++|+.|++++|...+.. ...+..+++|+.|+++++. ..+| ..+..+ ++|+.|++++|.++. .+..+.
T Consensus 331 -~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~-lp~~~~ 407 (549)
T 2z81_A 331 -QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFHP-MPDSCQ 407 (549)
T ss_dssp -HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCCC-CCSCCC
T ss_pred -hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCcc-CChhhc
Confidence 12336777777776555432 2234555566666666554 3322 224444 556666666555543 222344
Q ss_pred cCCCCCeeeecC---------------------CccCccEEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeec
Q 048083 577 KLCHLNILRIIG---------------------EAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEI 635 (692)
Q Consensus 577 ~l~~L~~L~l~~---------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 635 (692)
.+++|+.|++++ |.+.+. ...+++|+.|+++++ .++.+|. ...+++|+.|++
T Consensus 408 ~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~L 480 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKI 480 (549)
T ss_dssp CCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC-----CCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEEC
T ss_pred ccccccEEECCCCCcccccchhcCCceEEECCCCChhhh-----cccCChhcEEECCCC-ccCcCCC-cccCccCCEEec
Confidence 444555555544 444331 246889999999985 5777775 356899999999
Q ss_pred ccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 636 RSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 636 ~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
++|.--. .|..+..+++ |+.|++++|+
T Consensus 481 s~N~l~~~~~~~~~~l~~-L~~L~l~~N~ 508 (549)
T 2z81_A 481 SRNQLKSVPDGIFDRLTS-LQKIWLHTNP 508 (549)
T ss_dssp CSSCCCCCCTTGGGGCTT-CCEEECCSSC
T ss_pred CCCccCCcCHHHHhcCcc-cCEEEecCCC
Confidence 9965333 5556899999 9999998765
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.2e-25 Score=252.05 Aligned_cols=343 Identities=18% Similarity=0.132 Sum_probs=200.0
Q ss_pred cccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCC
Q 048083 300 QSLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLS 379 (692)
Q Consensus 300 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~ 379 (692)
.....+++.+..+ ....++...|.++++|++|.+.++.+.. ..+..| .++++|++|++++|.+..++
T Consensus 54 ~l~~L~~L~Ls~n---~l~~i~~~~~~~l~~L~~L~Ls~n~l~~--------~~p~~~--~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 54 NFSELQWLDLSRC---EIETIEDKAWHGLHHLSNLILTGNPIQS--------FSPGSF--SGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TCTTCCEEECTTC---CCCEECTTTTTTCTTCCEEECTTCCCCC--------CCTTSS--TTCTTCCEEECTTSCCCCSS
T ss_pred CCccCcEEeCCCC---cccccCHHHhhchhhcCEeECCCCcccc--------cChhhc--CCcccCCEEEccCCcccccc
Confidence 3456777777632 2233444456688999999998887322 346778 89999999999999998877
Q ss_pred hhhhccccccceeeccCCCcc--ccCccccCCCCCeEEecCCccceec-ChhhhccccCc----eeeccccccccccccc
Q 048083 380 DHVIGKLLHLSYLGLRSTFID--SLPNSVGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQ----HLYLNWIHSAISWLNF 452 (692)
Q Consensus 380 ~~~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~----~L~l~~~~~~~~~~~i 452 (692)
+..++++++|++|++++|.+. .+|..++++++|++|++++|.++.+ |..+..+++|+ +|++++|.+..++...
T Consensus 121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~ 200 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200 (606)
T ss_dssp SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccc
Confidence 544889999999999999886 4788899999999999999988765 44455555443 4555554443322221
Q ss_pred CCCcccc-------------------------------------------------------------------------
Q 048083 453 SSLNNLQ------------------------------------------------------------------------- 459 (692)
Q Consensus 453 ~~l~~L~------------------------------------------------------------------------- 459 (692)
....+|+
T Consensus 201 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 280 (606)
T 3vq2_A 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280 (606)
T ss_dssp TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc
Confidence 1111111
Q ss_pred ---------------------------cccccccCCCcccccc--------------------ccccccccccccccccc
Q 048083 460 ---------------------------TLWGLSMGDDSLFNQT--------------------FDFTKLASLRKLGVKCY 492 (692)
Q Consensus 460 ---------------------------~L~~~~~~~~~~~~~~--------------------~~l~~l~~L~~L~l~~~ 492 (692)
.|+.+++.++....+| ..+..+++|+.|+++++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence 1111122222111111 12345566777777665
Q ss_pred ch-h---hHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-cc-cc-ccccCccCccceeeeecc
Q 048083 493 SQ-R---VIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RM-FS-AKTSSFPRNLKIVTLSMS 565 (692)
Q Consensus 493 ~~-~---~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~-~p-~~~~~l~~~L~~L~L~~~ 565 (692)
.. . .+..+..++ +|+.|++++|...... ..+..+++|+.|+++++. .. .| ..+..+ ++|+.|++++|
T Consensus 361 ~l~~~~~~~~~~~~~~----~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n 434 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTN----SLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLDISYT 434 (606)
T ss_dssp CEEEEEECCHHHHCCS----CCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTC-TTCCEEECTTS
T ss_pred ccCCCcchhhhhccCC----cccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhcc-ccCCEEECcCC
Confidence 21 1 134454444 8888888887544432 445555666666666554 22 22 234444 55555555555
Q ss_pred CCCCCchhhhhcCCCCCeeeecCCccCccEEEEe------------------------cCCCCcccEEEeccCCCCcEEE
Q 048083 566 RLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQ------------------------AGGFPQLRVLKLWNLSSLEEWT 621 (692)
Q Consensus 566 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------------------------~~~~~~L~~L~l~~~~~l~~l~ 621 (692)
.+....+..+..+++|+.|++++|.+.+...+.. +..+++|+.|++++|.-....|
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 5544444444455555555555444443223323 3445555555555543222224
Q ss_pred ecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecC
Q 048083 622 VQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNM 662 (692)
Q Consensus 622 ~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c 662 (692)
.....+++|+.|++++|. ++ +|..+..++++|+.|+++++
T Consensus 515 ~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp GGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred HHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 445566777777777754 55 77777777633888888653
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=6.4e-25 Score=228.04 Aligned_cols=280 Identities=19% Similarity=0.215 Sum_probs=229.9
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLY 439 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 439 (692)
..+++|++|+++++.+..++. +..+++|++|++++|.+..+|. +.++++|++|++++|.++.+| .+.++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 578899999999999988864 8899999999999999999988 999999999999999999886 589999999999
Q ss_pred cccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeecc
Q 048083 440 LNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAW 519 (692)
Q Consensus 440 l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 519 (692)
+++|.+...+. +..+++|+.| +++.+.....+..+..+++|+.|+++++.......+.. +++|+.|++++|.
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L---~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSL---NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIAN----LTDLYSLSLNYNQ 188 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEE---ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG----CTTCSEEECTTSC
T ss_pred CcCCcccCchh-hccCCceeEE---ECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhcc----CCCCCEEEccCCc
Confidence 99999887665 5666666555 77777544444468999999999999883222222434 4599999999998
Q ss_pred CCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEE
Q 048083 520 RDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTC 598 (692)
Q Consensus 520 ~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 598 (692)
...... +..+++|+.|+++++. ..++. +..+ ++|++|++++|.+..... +..+++|+.|++++|.+... .
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~ 259 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP-VANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI---N 259 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---G
T ss_pred cccccc--ccCCCccceeecccCCCCCCch-hhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC---h
Confidence 766543 7888999999999987 44443 6677 999999999999987543 89999999999999987653 3
Q ss_pred ecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 599 QAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 599 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
....+++|+.|++++| .++.++ ....+++|+.|++++|.... .|..+..+++ |+.|++++|+
T Consensus 260 ~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~ 322 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNH 322 (347)
T ss_dssp GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT-CSEEECCSSS
T ss_pred hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhcccc-CCEEEccCCc
Confidence 4678999999999986 466664 35678999999999987555 7778889999 9999999997
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=9.4e-25 Score=236.01 Aligned_cols=301 Identities=16% Similarity=0.181 Sum_probs=190.2
Q ss_pred cCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc
Q 048083 326 DRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS 405 (692)
Q Consensus 326 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~ 405 (692)
..+++|++|.+.++.+... +. | ..+++|++|++++|.+..+++ +.++++|++|++++|.+..+|.
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~---------~~-~--~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 129 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDI---------TP-L--KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP- 129 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC---------GG-G--TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred hhhcCCCEEECCCCccCCc---------hh-h--hccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-
Confidence 3567777777776652221 22 5 667777777777777666554 6677777777777777766665
Q ss_pred ccCCCCCeEEecCCccceecCh--------------------hhhccccCceeecccccccccccccCCCcccccccccc
Q 048083 406 VGNLRYLETLDVKHTKLRYLPD--------------------SIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLS 465 (692)
Q Consensus 406 ~~~l~~L~~L~L~~~~l~~lp~--------------------~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~ 465 (692)
+.++++|++|++++|.++.+|. .+.++++|++|++++|.+..++ .+..+++|+.| +
T Consensus 130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L---~ 205 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL---I 205 (466)
T ss_dssp GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE---E
T ss_pred HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEE---E
Confidence 6667777777777776665542 1444555555555555544332 23333333333 5
Q ss_pred cCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-c
Q 048083 466 MGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-R 544 (692)
Q Consensus 466 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~ 544 (692)
++.+.....+ .++.+++|+.|+++++.-.....+. .+++|+.|++++|....... +..+++|+.|+++++. .
T Consensus 206 l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 206 ATNNQISDIT-PLGILTNLDELSLNGNQLKDIGTLA----SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278 (466)
T ss_dssp CCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGG----GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC
T ss_pred ecCCcccccc-cccccCCCCEEECCCCCcccchhhh----cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC
Confidence 5555422222 2555666777776665211112222 33477777777776655433 6677788888888776 4
Q ss_pred cccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEecC
Q 048083 545 MFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQE 624 (692)
Q Consensus 545 ~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 624 (692)
.++. +..+ ++|+.|++++|.+.... .+..+++|+.|++++|.+.+.. ....+++|+.|++++| .+..++ ..
T Consensus 279 ~~~~-~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n-~l~~~~-~l 349 (466)
T 1o6v_A 279 NISP-LAGL-TALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFYNN-KVSDVS-SL 349 (466)
T ss_dssp CCGG-GTTC-TTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSS-CCCCCG-GG
T ss_pred cccc-ccCC-CccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCch---hhccCccCCEeECCCC-ccCCch-hh
Confidence 4443 5566 78888888888877543 3778888888888888776532 2457888888888886 455553 45
Q ss_pred CCccccceeecccccccCCCcChhhhhccCcEEEEecCc
Q 048083 625 AAMPRLRELEIRSCNKLKPPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 625 ~~~~~L~~L~l~~c~~l~~p~~~~~l~~sL~~L~i~~c~ 663 (692)
..+++|+.|++++|.....+. +..+++ |+.|++++|+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~-L~~L~l~~n~ 386 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP-LANLTR-ITQLGLNDQA 386 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG-GTTCTT-CCEEECCCEE
T ss_pred ccCCCCCEEeCCCCccCccch-hhcCCC-CCEEeccCCc
Confidence 668899999999876444333 778888 9999998875
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.2e-25 Score=247.08 Aligned_cols=333 Identities=18% Similarity=0.165 Sum_probs=202.3
Q ss_pred eEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhc
Q 048083 305 RRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIG 384 (692)
Q Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 384 (692)
+++.+. .. ....+|... .++++.|.+.++.+.. ..+..| .++++|++|++++|.++.+++..|.
T Consensus 34 ~~l~ls-~~--~L~~ip~~~---~~~L~~L~Ls~N~i~~--------~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 34 SMVDYS-NR--NLTHVPKDL---PPRTKALSLSQNSISE--------LRMPDI--SFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp CEEECT-TS--CCCSCCTTS---CTTCCEEECCSSCCCC--------CCGGGT--TTCTTCCEEECCSCCCCEECTTTTT
T ss_pred cEEEcC-CC--CCccCCCCC---CCCcCEEECCCCCccc--------cChhhh--ccCCCccEEECCCCCCCcCCHHHhC
Confidence 455554 22 233355544 3789999998887322 345678 8999999999999998877655588
Q ss_pred cccccceeeccCCCccccCccccCCCCCeEEecCCccceec--ChhhhccccCceeecccccccccccccCCCccccccc
Q 048083 385 KLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYL--PDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLW 462 (692)
Q Consensus 385 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~ 462 (692)
++++|++|++++|.+..+|.. .+++|++|++++|.++.+ |..+.++++|++|++++|.+.. ..+..+++| .|+
T Consensus 98 ~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L-~L~ 172 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHL-HLS 172 (562)
T ss_dssp TCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTS-CEE
T ss_pred CCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--Cchhhhhhc-eee
Confidence 999999999999999988876 799999999999988865 4788999999999999887653 234444444 223
Q ss_pred ccccCCCcc--c-cccc--------------------------ccccccccccccccccc---hhhHHH-----------
Q 048083 463 GLSMGDDSL--F-NQTF--------------------------DFTKLASLRKLGVKCYS---QRVIDS----------- 499 (692)
Q Consensus 463 ~~~~~~~~~--~-~~~~--------------------------~l~~l~~L~~L~l~~~~---~~~~~~----------- 499 (692)
.++++.+.. . ..|. .+..+++|+.++++.+. ..+...
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 333333211 0 0000 12234444444444320 000000
Q ss_pred ----------------HHHHhhccCCcceEEeeeccCCccccCCC-----------------------------------
Q 048083 500 ----------------IAELVSRSTRLQSLKLVYAWRDDYSDIPF----------------------------------- 528 (692)
Q Consensus 500 ----------------l~~~~~~~~~L~~L~l~~~~~~~~~~~~l----------------------------------- 528 (692)
+.... ...+|++|++++|...+..+..+
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred EEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 00000 01245555555554332111111
Q ss_pred ------------------CCCCCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCc--hhhhhcCCCCCeeee
Q 048083 529 ------------------KAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDP--MEALEKLCHLNILRI 586 (692)
Q Consensus 529 ------------------~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~--~~~l~~l~~L~~L~l 586 (692)
..+++|++|+++++. ...|.++..+ ++|+.|++++|.+.... +..+..+++|+.|++
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 445566666666654 3345555555 56666666666655422 223555566666666
Q ss_pred cCCccCccEEEE---------------------ecCCC-CcccEEEeccCCCCcEEEecCCCccccceeecccccccC-C
Q 048083 587 IGEAYEGKKMTC---------------------QAGGF-PQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-P 643 (692)
Q Consensus 587 ~~~~~~~~~~~~---------------------~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~ 643 (692)
++|.+.+..... ....+ ++|+.|+++++ .++.+|.....+++|+.|++++| .++ +
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l 488 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSV 488 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCC
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCC
Confidence 555543311000 11123 57888888875 57777777778899999999995 567 8
Q ss_pred CcC-hhhhhccCcEEEEecCc
Q 048083 644 PEG-LRNLAATLKDIVLTNMP 663 (692)
Q Consensus 644 p~~-~~~l~~sL~~L~i~~c~ 663 (692)
|.. +..+++ |+.|+++++|
T Consensus 489 ~~~~~~~l~~-L~~L~l~~N~ 508 (562)
T 3a79_B 489 PDGVFDRLTS-LQYIWLHDNP 508 (562)
T ss_dssp CTTSTTTCTT-CCCEECCSCC
T ss_pred CHHHHhcCCC-CCEEEecCCC
Confidence 877 888999 9999998754
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=7e-25 Score=244.32 Aligned_cols=305 Identities=17% Similarity=0.147 Sum_probs=243.9
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-c
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-S 405 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~ 405 (692)
.+++++.+.+.++.+ ..+++.+| ..+++|++|+|++|.+..+++..|+.+++|++|+|++|.+..+|+ .
T Consensus 49 ~l~~l~~l~l~~~~l--------~~lp~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM--------RKLPAALL--DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESSCEE--------SEECTHHH--HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCCceEEEeeCCCC--------CCcCHHHH--ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH
Confidence 578889999888762 22456678 889999999999999998877559999999999999999988875 4
Q ss_pred ccCCCCCeEEecCCccceecChh-hhccccCceeeccccccccccc-ccCCCcccccccccccCCCcccccccccccccc
Q 048083 406 VGNLRYLETLDVKHTKLRYLPDS-IWKAKKLQHLYLNWIHSAISWL-NFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLAS 483 (692)
Q Consensus 406 ~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~ 483 (692)
++++++|++|+|++|.++.+|.. +.++++|++|++++|.+..+++ .++.+++|+.| +++++..... .++.+++
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L---~L~~N~l~~~--~~~~l~~ 193 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL---QLSSNRLTHV--DLSLIPS 193 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE---ECTTSCCSBC--CGGGCTT
T ss_pred HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE---ECcCCCCCCc--Chhhhhh
Confidence 68999999999999999988876 5899999999999999886554 57777777666 7777753333 3667889
Q ss_pred cccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEccccccccccccCccCccceeeee
Q 048083 484 LRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALRMFSAKTSSFPRNLKIVTLS 563 (692)
Q Consensus 484 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~ 563 (692)
|+.|+++++.-.. +. ...+|+.|++++|.+....... .++|+.|+++++.-.-+.++..+ ++|+.|+|+
T Consensus 194 L~~L~l~~n~l~~---l~----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~~l~~l-~~L~~L~Ls 262 (597)
T 3oja_B 194 LFHANVSYNLLST---LA----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDTAWLLNY-PGLVEVDLS 262 (597)
T ss_dssp CSEEECCSSCCSE---EE----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCCGGGGGC-TTCSEEECC
T ss_pred hhhhhcccCcccc---cc----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCChhhccC-CCCCEEECC
Confidence 9999998762111 11 2248999999999776553322 36899999999883334578888 999999999
Q ss_pred ccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccCC
Q 048083 564 MSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLKP 643 (692)
Q Consensus 564 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 643 (692)
+|.+....+..+..+++|+.|++++|.+.+ ++.....+++|+.|+|++| .+..+|.....+++|+.|++++|....+
T Consensus 263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 263 YNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCCc
Confidence 999998888889999999999999998865 4555667999999999986 4777777777899999999999764336
Q ss_pred CcChhhhhccCcEEEEecCc
Q 048083 644 PEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 644 p~~~~~l~~sL~~L~i~~c~ 663 (692)
| +..+++ |+.|++++|+
T Consensus 340 ~--~~~~~~-L~~L~l~~N~ 356 (597)
T 3oja_B 340 K--LSTHHT-LKNLTLSHND 356 (597)
T ss_dssp C--CCTTCC-CSEEECCSSC
T ss_pred C--hhhcCC-CCEEEeeCCC
Confidence 5 457788 9999999987
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=5.6e-24 Score=224.55 Aligned_cols=282 Identities=16% Similarity=0.153 Sum_probs=232.5
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceecC-hhhhccccCce
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQH 437 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~ 437 (692)
-.++++++|+++++.+..+|...+..+++|++|++++|.+..+++ .+.++++|++|++++|.++.+| ..+.++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 357899999999999999998878899999999999999988875 7899999999999999999775 56899999999
Q ss_pred eeccccccccccccc-CCCcccccccccccCCCcccccc-cccccccccccccccccchhhHHHHHHHhhccCCcceEEe
Q 048083 438 LYLNWIHSAISWLNF-SSLNNLQTLWGLSMGDDSLFNQT-FDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKL 515 (692)
Q Consensus 438 L~l~~~~~~~~~~~i-~~l~~L~~L~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 515 (692)
|++++|.+..+|..+ ..+++|+.| +++++.....+ ..++.+++|+.|+++++.-... .+. .+++|+.|++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L---~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~----~l~~L~~L~l 193 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTL---SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLS----LIPSLFHANV 193 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEE---ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGG----GCTTCSEEEC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEE---ECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccc----cccccceeec
Confidence 999999999888764 667777666 77777644443 3588999999999998721111 122 3459999999
Q ss_pred eeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCcc
Q 048083 516 VYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGK 594 (692)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 594 (692)
++|..... ...++|+.|+++++. ..+|... . ++|+.|++++|.+... +.+..+++|+.|++++|.+.+
T Consensus 194 ~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~~--~-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~- 262 (390)
T 3o6n_A 194 SYNLLSTL-----AIPIAVEELDASHNSINVVRGPV--N-VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK- 262 (390)
T ss_dssp CSSCCSEE-----ECCSSCSEEECCSSCCCEEECCC--C-SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-
T ss_pred cccccccc-----CCCCcceEEECCCCeeeeccccc--c-ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC-
Confidence 99965543 345689999999987 5555432 3 8999999999999864 578999999999999998764
Q ss_pred EEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 595 KMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 595 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
..+..+..+++|+.|+++++ .++.++.....+++|+.|++++| .+. +|..+..+++ |+.|++++|+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~-L~~L~L~~N~ 329 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDR-LENLYLDHNS 329 (390)
T ss_dssp EESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTT-CSEEECCSSC
T ss_pred cChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCc-CCEEECCCCc
Confidence 33445678999999999985 68889888888999999999997 566 9989999999 9999999986
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=3.2e-24 Score=231.83 Aligned_cols=301 Identities=18% Similarity=0.188 Sum_probs=186.0
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSV 406 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~ 406 (692)
++++++.|.+.++.... ++. + ..+++|++|++++|.+..+++ +..+++|++|++++|.+..+++ +
T Consensus 44 ~l~~l~~L~l~~~~i~~---------l~~-~--~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~ 108 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS---------IDG-V--EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-L 108 (466)
T ss_dssp HHHTCCEEECCSSCCCC---------CTT-G--GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred HhccccEEecCCCCCcc---------Ccc-h--hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-h
Confidence 46788999888776221 232 6 789999999999999998876 8999999999999999999887 9
Q ss_pred cCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCcccccccccccCCCccccccccccccccccc
Q 048083 407 GNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRK 486 (692)
Q Consensus 407 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~ 486 (692)
+++++|++|++++|.++.+|. +.++++|++|++++|.+..++ .++.+++|+.|. ++.. ....+ .+.++++|+.
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~---l~~~-~~~~~-~~~~l~~L~~ 181 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLS---FGNQ-VTDLK-PLANLTTLER 181 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEE---EEES-CCCCG-GGTTCTTCCE
T ss_pred cCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEee---cCCc-ccCch-hhccCCCCCE
Confidence 999999999999999998876 899999999999999887654 355555555543 2211 11111 2445555555
Q ss_pred ccccccchhhHHHHHHHh------------------hccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-cccc
Q 048083 487 LGVKCYSQRVIDSIAELV------------------SRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFS 547 (692)
Q Consensus 487 L~l~~~~~~~~~~l~~~~------------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p 547 (692)
|+++++.......+..+. +.+++|+.|++++|..... ..+..+++|+.|+++++. ..++
T Consensus 182 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 182 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred EECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch
Confidence 555544111111121222 1122444444444443332 234445555555555544 2222
Q ss_pred ccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEecCCCc
Q 048083 548 AKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAM 627 (692)
Q Consensus 548 ~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 627 (692)
. +..+ ++|++|++++|.+..... +..+++|+.|++++|.+.+.. ....+++|+.|++++|. +..++. ...+
T Consensus 260 ~-~~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~-~~~l 330 (466)
T 1o6v_A 260 P-LSGL-TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNN-ISDISP-VSSL 330 (466)
T ss_dssp G-GTTC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSSC-CSCCGG-GGGC
T ss_pred h-hhcC-CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch---hhcCCCCCCEEECcCCc-CCCchh-hccC
Confidence 2 4444 556666666665554322 555666666666655554321 13456666666666643 333322 3456
Q ss_pred cccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 628 PRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 628 ~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
++|+.|++++| .+. ++ .+..+++ |+.|++++|+
T Consensus 331 ~~L~~L~l~~n-~l~~~~-~l~~l~~-L~~L~l~~n~ 364 (466)
T 1o6v_A 331 TKLQRLFFYNN-KVSDVS-SLANLTN-INWLSAGHNQ 364 (466)
T ss_dssp TTCCEEECCSS-CCCCCG-GGTTCTT-CCEEECCSSC
T ss_pred ccCCEeECCCC-ccCCch-hhccCCC-CCEEeCCCCc
Confidence 67777777775 344 43 4666677 7777777665
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=8.8e-24 Score=240.12 Aligned_cols=269 Identities=18% Similarity=0.145 Sum_probs=167.9
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
+..++++.+.. . .....+...|.++++|++|.+.++.+. ...+..| .++++|++|++++|.+..+|+
T Consensus 24 ~~~l~~L~Ls~-n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~--~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 24 PTNITVLNLTH-N--QLRRLPAANFTRYSQLTSLDVGFNTIS--------KLEPELC--QKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CTTCSEEECCS-S--CCCCCCGGGGGGGTTCSEEECCSSCCC--------CCCTTHH--HHCTTCCEEECCSSCCCCCCT
T ss_pred CCCCcEEECCC-C--CCCCcCHHHHhCCCcCcEEECCCCccC--------ccCHHHH--hcccCcCEEECCCCccCccCh
Confidence 35777887773 3 233345555678899999999887632 2346677 889999999999999888887
Q ss_pred hhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceec-ChhhhccccCceeecccccccccccc-c--CCC
Q 048083 381 HVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLNWIHSAISWLN-F--SSL 455 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~-i--~~l 455 (692)
..|.++++|++|++++|.+..+| ..++++++|++|++++|.++.. |..+.++++|++|++++|.+...+.. + ..+
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 65889999999999999888887 4688899999999999988754 56678899999999999887755543 2 233
Q ss_pred cccccccccccCCCccccc-ccccccccccccccccccch--hhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCC
Q 048083 456 NNLQTLWGLSMGDDSLFNQ-TFDFTKLASLRKLGVKCYSQ--RVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQA 532 (692)
Q Consensus 456 ~~L~~L~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 532 (692)
++|+.| +++.+..... |..+..+++|+.|.+..+.. .....+.... ..++|+.|++++|......+..+..++
T Consensus 171 ~~L~~L---~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 171 SSLKKL---ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp CEESEE---ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred ccccEE---ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccC
Confidence 444444 6766653332 23466777777777665411 1111111110 123566666665555444444444433
Q ss_pred --CccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeec
Q 048083 533 --NLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRII 587 (692)
Q Consensus 533 --~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~ 587 (692)
+|+.|+++++. ...|.++..+ ++|++|++++|.+....+..+.++++|+.|+++
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred cCCCCEEECCCCCcCccCcccccCc-ccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 25555555544 2223344444 555555555555544333344444444444443
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=242.30 Aligned_cols=340 Identities=17% Similarity=0.146 Sum_probs=230.5
Q ss_pred cccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCC
Q 048083 300 QSLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLS 379 (692)
Q Consensus 300 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~ 379 (692)
.+..++++.+..+. ........|.++++|++|.+.++.. +..+.+..| .++++|++|+|++|.+..++
T Consensus 22 lp~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~-------~~~i~~~~f--~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 22 VLNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYT-------PLTIDKEAF--RNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp SCTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCC-------CCEECTTTT--SSCTTCCEEECTTCCCCEEC
T ss_pred CCCCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCC-------ccccCHHHh--cCCCCCCEEECCCCcCcccC
Confidence 45778888888433 2334444567899999999998841 111346778 99999999999999998775
Q ss_pred hhhhccccccceeeccCCCccc-cCcc--ccCCCCCeEEecCCccceec--ChhhhccccCceeecccccccc-cccccC
Q 048083 380 DHVIGKLLHLSYLGLRSTFIDS-LPNS--VGNLRYLETLDVKHTKLRYL--PDSIWKAKKLQHLYLNWIHSAI-SWLNFS 453 (692)
Q Consensus 380 ~~~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~L~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~-~~~~i~ 453 (692)
+..|+++++|++|++++|.+.. +|.. ++++++|++|++++|.++.+ +..++++++|++|++++|.+.. .+..+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 5449999999999999998865 4544 88999999999999988865 3578999999999999998764 344444
Q ss_pred CC--cccccccccccCCCcc-cccccccccccc------ccccccccc--chhhHHHHHHH-------------------
Q 048083 454 SL--NNLQTLWGLSMGDDSL-FNQTFDFTKLAS------LRKLGVKCY--SQRVIDSIAEL------------------- 503 (692)
Q Consensus 454 ~l--~~L~~L~~~~~~~~~~-~~~~~~l~~l~~------L~~L~l~~~--~~~~~~~l~~~------------------- 503 (692)
.+ ++|+.| +++.+.. ...|..++.+.+ |+.|+++++ ....+..+...
T Consensus 170 ~l~~~~L~~L---~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 170 PLQGKTLSFF---SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp HHHHCSSCCC---EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred cccCCccceE---ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 44 344433 5555541 122223444333 677777655 11111111100
Q ss_pred --------------hh-ccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceeeeeccC
Q 048083 504 --------------VS-RSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSR 566 (692)
Q Consensus 504 --------------~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~ 566 (692)
.+ ..++|+.|++++|.........+..+++|+.|+|+++. ...|..+..+ ++|++|+|++|.
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNL 325 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCC
Confidence 00 02478888888887777777778888888888888876 3445567777 888888888888
Q ss_pred CCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCc
Q 048083 567 LYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPE 645 (692)
Q Consensus 567 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~ 645 (692)
+....+..+..+++|+.|++++|.+.... +..+..+++|+.|+++++. ++.++ .+++|+.|++++|. +. +|.
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~i~----~~~~L~~L~l~~N~-l~~l~~ 398 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNA-LTTIH----FIPSIPDIFLSGNK-LVTLPK 398 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCC-SCCCS----SCCSCSEEEEESCC-CCCCCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCC-CCccc----CCCCcchhccCCCC-cccccc
Confidence 87776777888888888888888764321 2234567888888888743 44332 24555665555533 22 332
Q ss_pred ----------------------ChhhhhccCcEEEEecCc
Q 048083 646 ----------------------GLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 646 ----------------------~~~~l~~sL~~L~i~~c~ 663 (692)
.+..+++ |+.|++++|.
T Consensus 399 ~~~~l~~L~ls~N~l~~l~~~~~~~~l~~-L~~L~Ls~N~ 437 (844)
T 3j0a_A 399 INLTANLIHLSENRLENLDILYFLLRVPH-LQILILNQNR 437 (844)
T ss_dssp CCTTCCEEECCSCCCCSSTTHHHHTTCTT-CCEEEEESCC
T ss_pred cccccceeecccCccccCchhhhhhcCCc-cceeeCCCCc
Confidence 1336788 8899888875
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.1e-23 Score=225.81 Aligned_cols=294 Identities=18% Similarity=0.123 Sum_probs=209.4
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSV 406 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~ 406 (692)
++++|+.|.+.++.+.. .+ .| ..+++|++|++++|.++.++ ++.+++|++|++++|.+..+| +
T Consensus 40 ~l~~L~~L~Ls~n~l~~---------~~-~l--~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD---------MT-GI--EKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp HHTTCCEEECCSSCCCC---------CT-TG--GGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--C
T ss_pred HcCCCCEEEccCCCccc---------Ch-hh--cccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--c
Confidence 57888888888876321 12 46 78888888999888888774 778888889999888888875 7
Q ss_pred cCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCcccccccccccCCCccccccccccccccccc
Q 048083 407 GNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRK 486 (692)
Q Consensus 407 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~ 486 (692)
+++++|++|++++|.++.+| ++.+++|++|++++|.+..++ ++.+++|+.| +++.+...... .++.+++|+.
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L---~l~~n~~~~~~-~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTEL---DCHLNKKITKL-DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEE---ECTTCSCCCCC-CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEE---ECCCCCccccc-ccccCCcCCE
Confidence 88888899999888888776 788888889988888877653 5555555555 66666422211 4677888888
Q ss_pred ccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeecc
Q 048083 487 LGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMS 565 (692)
Q Consensus 487 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~ 565 (692)
|+++++.-.... +. .+++|+.|++++|..+.. .+..+++|+.|+++++. ..+| +..+ ++|+.|++++|
T Consensus 175 L~ls~n~l~~l~-l~----~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l-~~L~~L~l~~N 243 (457)
T 3bz5_A 175 LDCSFNKITELD-VS----QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPL-TQLTYFDCSVN 243 (457)
T ss_dssp EECCSSCCCCCC-CT----TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTC-TTCSEEECCSS
T ss_pred EECCCCccceec-cc----cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--cccc-CCCCEEEeeCC
Confidence 888877211111 32 345899999998877665 37778899999999877 5566 6677 88999999999
Q ss_pred CCCCCchhhhhcCC-------CCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEec--------CCCcccc
Q 048083 566 RLYWDPMEALEKLC-------HLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQ--------EAAMPRL 630 (692)
Q Consensus 566 ~l~~~~~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--------~~~~~~L 630 (692)
.+....+..+..+. +|+.|++++|...+ .++ .+.+++|+.|++++|..+..+|.. ...+++|
T Consensus 244 ~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~-~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 244 PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI-YFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC-EEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC-ccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 88876543333333 44555565555443 222 467889999999998887777742 2234667
Q ss_pred ceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 631 RELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 631 ~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
+.|++++| +++ ++ +.++++ |+.|+++++.
T Consensus 321 ~~L~L~~N-~l~~l~--l~~l~~-L~~L~l~~N~ 350 (457)
T 3bz5_A 321 VYLYLNNT-ELTELD--VSHNTK-LKSLSCVNAH 350 (457)
T ss_dssp CEEECTTC-CCSCCC--CTTCTT-CSEEECCSSC
T ss_pred CEEECCCC-cccccc--cccCCc-CcEEECCCCC
Confidence 77777763 455 54 678888 9999887764
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=4.7e-24 Score=230.30 Aligned_cols=320 Identities=16% Similarity=0.106 Sum_probs=237.8
Q ss_pred CcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCC-CCChhhhccccccceeeccCCCcccc-Ccc
Q 048083 328 SCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKP-KLSDHVIGKLLHLSYLGLRSTFIDSL-PNS 405 (692)
Q Consensus 328 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~l~~L~~L~l~~~~i~~l-p~~ 405 (692)
.++++.|.+.++.+. ...+..| .++++|++|++++|.+. .+++..|.++++|++|++++|.+..+ |..
T Consensus 29 ~~~l~~L~Ls~n~i~--------~~~~~~~--~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 29 PAHVNYVDLSLNSIA--------ELNETSF--SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CTTCCEEECCSSCCC--------EECTTTT--SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred CCccCEEEecCCccC--------cCChhHh--ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh
Confidence 478999999988732 2346778 99999999999999986 66555599999999999999999877 678
Q ss_pred ccCCCCCeEEecCCcccee-cChh--hhccccCceeeccccccccc-ccc-cCCCcccccccccccCCCccccc-ccccc
Q 048083 406 VGNLRYLETLDVKHTKLRY-LPDS--IWKAKKLQHLYLNWIHSAIS-WLN-FSSLNNLQTLWGLSMGDDSLFNQ-TFDFT 479 (692)
Q Consensus 406 ~~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~-~~~-i~~l~~L~~L~~~~~~~~~~~~~-~~~l~ 479 (692)
++++++|++|++++|.++. +|.. +.++++|++|++++|.+... |.. +..+++|+.| +++.+..... +..+.
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L---~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL---DLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE---ECTTCCBSCCCTTTSG
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE---eCCCCcccccChhhhh
Confidence 9999999999999999884 4444 88999999999999998866 433 6666666666 7777753332 23455
Q ss_pred cc--cccccccccccchh------hHHHHHHHhhccCCcceEEeeeccCCccccCCCC---CCCCccEEEEcccc-cc--
Q 048083 480 KL--ASLRKLGVKCYSQR------VIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFK---AQANLQELYLRGAL-RM-- 545 (692)
Q Consensus 480 ~l--~~L~~L~l~~~~~~------~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~L~~~~-~~-- 545 (692)
.+ .+|+.|+++.+... ...........+++|++|++++|......+..+. ..++|+.|+++++. ..
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 55 67888888876111 0011111111235899999999977655433332 23789999998763 11
Q ss_pred -----c----cccccCc-cCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCC
Q 048083 546 -----F----SAKTSSF-PRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLS 615 (692)
Q Consensus 546 -----~----p~~~~~l-~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 615 (692)
+ +..+..+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|+++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N- 333 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFWGLTHLLKLNLSQN- 333 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSS-
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc-cChhHhcCcccCCEEECCCC-
Confidence 0 1111111 1689999999999998777889999999999999998764 22334567899999999986
Q ss_pred CCcEE-EecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 616 SLEEW-TVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 616 ~l~~l-~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
.+..+ +.....+++|+.|++++|..-. .|..+..+++ |++|++++|.
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~ 382 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN-LKELALDTNQ 382 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSC
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc-ccEEECCCCc
Confidence 46666 4455779999999999976444 7889999999 9999999885
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=9.2e-24 Score=229.29 Aligned_cols=294 Identities=17% Similarity=0.114 Sum_probs=217.4
Q ss_pred cccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCC
Q 048083 300 QSLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLS 379 (692)
Q Consensus 300 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~ 379 (692)
.+..++.+.+.. . .....+...|.++++|+.|.+.++.+ ....+..| .++++|++|+|++|.++.++
T Consensus 30 ~~~~l~~L~L~~-n--~l~~~~~~~~~~l~~L~~L~L~~n~i--------~~~~~~~~--~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 30 IPTETRLLDLGK-N--RIKTLNQDEFASFPHLEELELNENIV--------SAVEPGAF--NNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp CCTTCSEEECCS-S--CCCEECTTTTTTCTTCCEEECTTSCC--------CEECTTTT--TTCTTCCEEECCSSCCCSCC
T ss_pred CCCCCcEEECCC-C--ccceECHhHccCCCCCCEEECCCCcc--------CEeChhhh--hCCccCCEEECCCCcCCccC
Confidence 345778888873 3 33334455567899999999998872 22456778 99999999999999999999
Q ss_pred hhhhccccccceeeccCCCcccc-CccccCCCCCeEEecCCccceec-ChhhhccccCceeeccccccccccc-ccCCCc
Q 048083 380 DHVIGKLLHLSYLGLRSTFIDSL-PNSVGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLNWIHSAISWL-NFSSLN 456 (692)
Q Consensus 380 ~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~-~i~~l~ 456 (692)
...|.++++|++|++++|.+..+ |..+.++++|++|++++|.++.+ |..+..+++|++|++++|.+..++. .+..++
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC
Confidence 87689999999999999999777 45789999999999999999866 5689999999999999999887664 466677
Q ss_pred ccccccccccCCCcccccc-ccccccccccccccccc--chhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCC
Q 048083 457 NLQTLWGLSMGDDSLFNQT-FDFTKLASLRKLGVKCY--SQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQAN 533 (692)
Q Consensus 457 ~L~~L~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 533 (692)
+|+.| ++..+.....+ ..+..+++|+.|+++++ ....+...... .+|++|++++|.+.......+..+++
T Consensus 177 ~L~~L---~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 177 GLIVL---RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG----LNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp TCCEE---EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT----CCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred CCcEE---eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC----ccccEEECcCCcccccCHHHhcCccc
Confidence 66666 66665433322 25778888888888765 11122111122 27888888888777665556777888
Q ss_pred ccEEEEcccc-ccc-cccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEe
Q 048083 534 LQELYLRGAL-RMF-SAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKL 611 (692)
Q Consensus 534 L~~L~L~~~~-~~~-p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 611 (692)
|+.|+|+++. ..+ +..+..+ ++|+.|+|++|.+....+..+..+++|+.|++++|.+.... +..+..+++|+.|++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE-ESVFHSVGNLETLIL 327 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTC-TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC-GGGBSCGGGCCEEEC
T ss_pred cCeeECCCCcCCccChhhcccc-ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC-HhHcCCCcccCEEEc
Confidence 8888888876 333 3445666 78888888888887766677788888888888887765421 123456778888888
Q ss_pred ccCC
Q 048083 612 WNLS 615 (692)
Q Consensus 612 ~~~~ 615 (692)
.+++
T Consensus 328 ~~N~ 331 (477)
T 2id5_A 328 DSNP 331 (477)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7754
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=7.2e-24 Score=235.81 Aligned_cols=138 Identities=25% Similarity=0.201 Sum_probs=114.6
Q ss_pred CcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccC
Q 048083 317 TKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRS 396 (692)
Q Consensus 317 ~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~ 396 (692)
...+|... .+.++.|.+.++.+. ...+..| .++++|++|++++|.++.+++..|.++++|++|++++
T Consensus 19 l~~ip~~l---~~~l~~L~Ls~n~l~--------~~~~~~~--~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 19 FYKIPDNL---PFSTKNLDLSFNPLR--------HLGSYSF--FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp CSSCCSSS---CSSCCEEECCSCCCC--------EECTTTT--TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCCCc---cccccEEEccCCccC--------ccChhHh--hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 34455544 467999999988732 2345678 8999999999999999988776699999999999999
Q ss_pred CCccccC-ccccCCCCCeEEecCCccceecCh-hhhccccCceeecccccccc--cccccCCCcccccccccccCCCc
Q 048083 397 TFIDSLP-NSVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHSAI--SWLNFSSLNNLQTLWGLSMGDDS 470 (692)
Q Consensus 397 ~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~i~~l~~L~~L~~~~~~~~~ 470 (692)
|.+..+| ..++++++|++|++++|+++.+|. .++++++|++|++++|.+.. +|..++.+++|+.| +++++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L---~l~~n~ 160 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL---DLSSNK 160 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE---ECTTSC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE---eCcCCc
Confidence 9998887 578999999999999999998875 68999999999999998874 68888888888777 555554
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1e-23 Score=233.39 Aligned_cols=324 Identities=18% Similarity=0.197 Sum_probs=212.0
Q ss_pred cccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCC
Q 048083 318 KLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRST 397 (692)
Q Consensus 318 ~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~ 397 (692)
..+|... .+++++|.+.++.+. ...+..| .++++|++|++++|.+..+++..|..+++|++|++++|
T Consensus 18 ~~ip~~~---~~~L~~L~Ls~n~l~--------~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 18 TSIPSGL---TAAMKSLDLSFNKIT--------YIGHGDL--RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp SSCCSCC---CTTCCEEECCSSCCC--------EECSSTT--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred ccccccC---CCCccEEECcCCccC--------ccChhhh--hcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 3455544 378999999998732 2345678 99999999999999999887655999999999999999
Q ss_pred CccccCcc-ccCCCCCeEEecCCcccee--cChhhhccccCceeeccccc-ccccc-cccCCCcccccccccccCCCccc
Q 048083 398 FIDSLPNS-VGNLRYLETLDVKHTKLRY--LPDSIWKAKKLQHLYLNWIH-SAISW-LNFSSLNNLQTLWGLSMGDDSLF 472 (692)
Q Consensus 398 ~i~~lp~~-~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~-~~~~~-~~i~~l~~L~~L~~~~~~~~~~~ 472 (692)
.+..+|+. ++++++|++|++++|.++. .|..+.++++|++|++++|. ...+| ..+..+++|+.| +++.+...
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L---~L~~n~l~ 161 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL---EIKALSLR 161 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE---EEEETTCC
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee---eccCCccc
Confidence 99988865 8999999999999999884 46789999999999999997 44555 467777777666 66665422
Q ss_pred -ccccccccccccccccccccch-hhHHHHHHHhhccCCcceEEeeeccCCccc---cCCCCCCCCccEEEEccc-----
Q 048083 473 -NQTFDFTKLASLRKLGVKCYSQ-RVIDSIAELVSRSTRLQSLKLVYAWRDDYS---DIPFKAQANLQELYLRGA----- 542 (692)
Q Consensus 473 -~~~~~l~~l~~L~~L~l~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~L~~~----- 542 (692)
..|..++.+++|+.|++..+.. ..+..+. ..+++|+.|++++|...... ......+++|+.|+++++
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFA---DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHH---HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhH---hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 2455789999999999987732 2333322 22459999999999766542 111222334444444332
Q ss_pred -----------------------c-cccc---------------------------cc--c------cCccCccceeeee
Q 048083 543 -----------------------L-RMFS---------------------------AK--T------SSFPRNLKIVTLS 563 (692)
Q Consensus 543 -----------------------~-~~~p---------------------------~~--~------~~l~~~L~~L~L~ 563 (692)
. ..++ .. + .....+|+.|+++
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 1 0000 00 0 0001356666666
Q ss_pred ccCCCCCchhhhhcCCCCCeeeecCCccCccEE--EEecCCCCcccEEEeccCCCCcEEEe---cCCCccccceeecccc
Q 048083 564 MSRLYWDPMEALEKLCHLNILRIIGEAYEGKKM--TCQAGGFPQLRVLKLWNLSSLEEWTV---QEAAMPRLRELEIRSC 638 (692)
Q Consensus 564 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~l~~---~~~~~~~L~~L~l~~c 638 (692)
+|.+...+...+..+++|+.|++++|.+.+... ....+.+++|+.|++++| .++.++. ....+++|++|++++|
T Consensus 319 ~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp SSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred cCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC
Confidence 666554333333567777777777666654221 112345666777776664 3444331 2345666666666664
Q ss_pred cccC-CCcChhhhhccCcEEEEecCc
Q 048083 639 NKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 639 ~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
+++ +|..+..+++ |+.|++++|.
T Consensus 398 -~l~~lp~~~~~~~~-L~~L~Ls~N~ 421 (549)
T 2z81_A 398 -TFHPMPDSCQWPEK-MRFLNLSSTG 421 (549)
T ss_dssp -CCCCCCSCCCCCTT-CCEEECTTSC
T ss_pred -CCccCChhhccccc-ccEEECCCCC
Confidence 455 6666656666 6666666654
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=228.29 Aligned_cols=290 Identities=19% Similarity=0.172 Sum_probs=194.3
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCcccc-CccccCCCCCeEEecCCccceecChhhhccccCceeecc
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSL-PNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLN 441 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 441 (692)
++|++|++++|.+..+++..+..+++|++|++++|.+..+ |..++++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 7999999999999988866599999999999999999887 67899999999999999999999877 89999999999
Q ss_pred cccccc--cccccCCCcccccccccccCCCccc--------------------------ccccc----------------
Q 048083 442 WIHSAI--SWLNFSSLNNLQTLWGLSMGDDSLF--------------------------NQTFD---------------- 477 (692)
Q Consensus 442 ~~~~~~--~~~~i~~l~~L~~L~~~~~~~~~~~--------------------------~~~~~---------------- 477 (692)
+|.+.. +|..++.+++|+.|. ++.+... ..|..
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~---L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLG---LSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEE---EEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred CCccccccchhhhccCCcceEEE---ecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 999875 567888888877763 2222110 00111
Q ss_pred ----------cccccccccccccccc-----hhhHH---------------------------HHHHHhhccCCcceEEe
Q 048083 478 ----------FTKLASLRKLGVKCYS-----QRVID---------------------------SIAELVSRSTRLQSLKL 515 (692)
Q Consensus 478 ----------l~~l~~L~~L~l~~~~-----~~~~~---------------------------~l~~~~~~~~~L~~L~l 515 (692)
+..+++|+.|+++++. ..+.. .+.... .+++|+.|++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~~~~L~~L~l 254 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSI 254 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH-HTSSCSEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh-hhCcccEEEe
Confidence 1224444555444321 00111 111100 1237777888
Q ss_pred eeccCCccccCCC-----------------------------------------------------CCCCCccEEEEccc
Q 048083 516 VYAWRDDYSDIPF-----------------------------------------------------KAQANLQELYLRGA 542 (692)
Q Consensus 516 ~~~~~~~~~~~~l-----------------------------------------------------~~~~~L~~L~L~~~ 542 (692)
++|...+..+..+ ..+++|++|+++++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred ecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECC
Confidence 7776543222222 45566777777766
Q ss_pred c--ccccccccCccCccceeeeeccCCCCC--chhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCc
Q 048083 543 L--RMFSAKTSSFPRNLKIVTLSMSRLYWD--PMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLE 618 (692)
Q Consensus 543 ~--~~~p~~~~~l~~~L~~L~L~~~~l~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 618 (692)
. ...|.++..+ ++|++|++++|.+... .+..+..+++|+.|++++|.+.+.........+++|+.|++++|.--.
T Consensus 335 ~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 335 LLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp CCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred ccChhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 5 3356666666 6777777777776642 224466777777777777766542111123456777777777754222
Q ss_pred EEEecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 619 EWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 619 ~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
..+... .++|+.|++++| .++ +|..+..+++ |++|++++|.
T Consensus 414 ~~~~~l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~-L~~L~L~~N~ 455 (520)
T 2z7x_B 414 TIFRCL--PPRIKVLDLHSN-KIKSIPKQVVKLEA-LQELNVASNQ 455 (520)
T ss_dssp GGGGSC--CTTCCEEECCSS-CCCCCCGGGGGCTT-CCEEECCSSC
T ss_pred chhhhh--cccCCEEECCCC-cccccchhhhcCCC-CCEEECCCCc
Confidence 222111 168999999986 566 8988889999 9999999885
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.4e-23 Score=230.68 Aligned_cols=281 Identities=17% Similarity=0.162 Sum_probs=233.0
Q ss_pred CcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceecCh-hhhccccCcee
Q 048083 361 GLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHL 438 (692)
Q Consensus 361 ~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L 438 (692)
.+++++.|+++++.+..+|+..+..+++|++|++++|.+..+|+ .++.+++|++|+|++|.++.+|. .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 56889999999999999999878899999999999999988875 78999999999999999997764 57999999999
Q ss_pred eccccccccccccc-CCCcccccccccccCCCccccccc-ccccccccccccccccchhhHHHHHHHhhccCCcceEEee
Q 048083 439 YLNWIHSAISWLNF-SSLNNLQTLWGLSMGDDSLFNQTF-DFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLV 516 (692)
Q Consensus 439 ~l~~~~~~~~~~~i-~~l~~L~~L~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 516 (692)
++++|.+..+|..+ +.+++|+.| +++++.....++ .++.+++|+.|+++++.-... .+ +.+++|+.|+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L---~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~----~~l~~L~~L~l~ 200 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTL---SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DL----SLIPSLFHANVS 200 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEE---ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CG----GGCTTCSEEECC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEE---EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-Ch----hhhhhhhhhhcc
Confidence 99999999888764 677777766 777776444443 589999999999998721111 12 234599999999
Q ss_pred eccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccE
Q 048083 517 YAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKK 595 (692)
Q Consensus 517 ~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 595 (692)
+|.... +..+++|+.|+++++. ..+|..+ +++|+.|+|++|.++.. +.+..+++|+.|++++|.+.+ .
T Consensus 201 ~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~ 269 (597)
T 3oja_B 201 YNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK-I 269 (597)
T ss_dssp SSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-E
T ss_pred cCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCC-C
Confidence 996554 3455689999999987 5555332 38999999999999863 678999999999999998864 3
Q ss_pred EEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 596 MTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 596 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
.+..+..+++|+.|+|+++ .+..+|.....+|+|+.|++++|. +. +|..+..+++ |+.|++++|+
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~-L~~L~L~~N~ 335 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR-LENLYLDHNS 335 (597)
T ss_dssp ESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT-CSEEECCSSC
T ss_pred CHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCC-CCEEECCCCC
Confidence 3446778999999999984 688899888889999999999975 56 9999999999 9999999986
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=7.8e-23 Score=226.54 Aligned_cols=312 Identities=17% Similarity=0.129 Sum_probs=213.2
Q ss_pred CcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCcccc-Cccc
Q 048083 328 SCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSL-PNSV 406 (692)
Q Consensus 328 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~l-p~~~ 406 (692)
+...+++.+.++.... +|..+ .++|++|++++|.+..+++..+.++++|++|++++|.+..+ |..+
T Consensus 30 ~~~~~~l~ls~~~L~~---------ip~~~----~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 96 (562)
T 3a79_B 30 NELESMVDYSNRNLTH---------VPKDL----PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96 (562)
T ss_dssp ---CCEEECTTSCCCS---------CCTTS----CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT
T ss_pred cCCCcEEEcCCCCCcc---------CCCCC----CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh
Confidence 4455788888776221 23323 37899999999999988875599999999999999999888 5678
Q ss_pred cCCCCCeEEecCCccceecChhhhccccCceeecccccccccc--cccCCCcccccccccccCCCccccccccccccccc
Q 048083 407 GNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISW--LNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASL 484 (692)
Q Consensus 407 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~--~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L 484 (692)
+++++|++|++++|.++.+|.. .+++|++|++++|.+..++ ..++.+++|+.| +++.+.... ..+..+++|
T Consensus 97 ~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L---~L~~n~l~~--~~~~~l~~L 169 (562)
T 3a79_B 97 LFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL---GLSAAKFRQ--LDLLPVAHL 169 (562)
T ss_dssp TTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEE---EEECSBCCT--TTTGGGTTS
T ss_pred CCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEE---ecCCCcccc--Cchhhhhhc
Confidence 9999999999999999999977 8999999999999988654 677787777777 666664222 145555555
Q ss_pred --ccccccccch----hhHHHHHHH----------------------hhccCCcceEEeeecc-----------------
Q 048083 485 --RKLGVKCYSQ----RVIDSIAEL----------------------VSRSTRLQSLKLVYAW----------------- 519 (692)
Q Consensus 485 --~~L~l~~~~~----~~~~~l~~~----------------------~~~~~~L~~L~l~~~~----------------- 519 (692)
+.|+++++.. ..+..+..+ ...+++|+.|++++|.
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 8888876521 011111110 0012355555555542
Q ss_pred -----------CCccc---cCCCCCCCCccEEEEcccc--ccccccc---------------------------------
Q 048083 520 -----------RDDYS---DIPFKAQANLQELYLRGAL--RMFSAKT--------------------------------- 550 (692)
Q Consensus 520 -----------~~~~~---~~~l~~~~~L~~L~L~~~~--~~~p~~~--------------------------------- 550 (692)
..... .......++|++|+++++. +.+|.++
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~ 329 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc
Confidence 11100 0000112378888888766 3555443
Q ss_pred --------------------cCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCcc-EEEEecCCCCcccEE
Q 048083 551 --------------------SSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGK-KMTCQAGGFPQLRVL 609 (692)
Q Consensus 551 --------------------~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L 609 (692)
..+ ++|++|++++|.+....+..+..+++|+.|++++|.+.+. ..+.....+++|+.|
T Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVCPPSP-SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp TCCCSEEEEESSCCCCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred cCcceEEEccCCCcccccCccCC-CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 344 8999999999999987778899999999999999988652 122345678999999
Q ss_pred EeccCCCCcE-EEec-CC---------------------Cc-cccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 610 KLWNLSSLEE-WTVQ-EA---------------------AM-PRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 610 ~l~~~~~l~~-l~~~-~~---------------------~~-~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
+++++. +.. +|.. .. .+ ++|+.|++++| .++ +|.++..+++ |+.|++++|.
T Consensus 409 ~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~-L~~L~L~~N~ 484 (562)
T 3a79_B 409 DVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQA-LQELNVASNQ 484 (562)
T ss_dssp ECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCC-CSEEECCSSC
T ss_pred ECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCC-CCEEECCCCC
Confidence 998754 332 3321 11 12 57788888775 566 7877778888 8888888775
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=6.5e-23 Score=232.99 Aligned_cols=274 Identities=17% Similarity=0.125 Sum_probs=199.7
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
....+.+.+..+ .....+...|.++++|++|.+.++.+.. +.+..| ..+++|++|++++|.+..+++
T Consensus 48 l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------l~~~~~--~~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 48 YSQLTSLDVGFN---TISKLEPELCQKLPMLKVLNLQHNELSQ--------LSDKTF--AFCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp GTTCSEEECCSS---CCCCCCTTHHHHCTTCCEEECCSSCCCC--------CCTTTT--TTCTTCSEEECCSSCCCCCCS
T ss_pred CCcCcEEECCCC---ccCccCHHHHhcccCcCEEECCCCccCc--------cChhhh--ccCCCCCEEECCCCccCccCh
Confidence 456777777633 2233444456689999999999887322 345568 899999999999999998886
Q ss_pred hhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceecChh-h--hccccCceeecccccccccc-cccCCC
Q 048083 381 HVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYLPDS-I--WKAKKLQHLYLNWIHSAISW-LNFSSL 455 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-~--~~l~~L~~L~l~~~~~~~~~-~~i~~l 455 (692)
..++++++|++|++++|.+..++ ..++++++|++|++++|.++.++.. + ..+++|++|++++|.+...+ ..+..+
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 194 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGS
T ss_pred hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhh
Confidence 55999999999999999887664 5678999999999999999877643 3 35689999999999877543 344444
Q ss_pred cccc------------------------cccccccCCCcccc-cccccccccc--cccccccccc--hhhHHHHHHHhhc
Q 048083 456 NNLQ------------------------TLWGLSMGDDSLFN-QTFDFTKLAS--LRKLGVKCYS--QRVIDSIAELVSR 506 (692)
Q Consensus 456 ~~L~------------------------~L~~~~~~~~~~~~-~~~~l~~l~~--L~~L~l~~~~--~~~~~~l~~~~~~ 506 (692)
.+|+ .|+.++++.+.... .|..+..++. |+.|+++++. ...+..+..++
T Consensus 195 ~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-- 272 (680)
T 1ziw_A 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP-- 272 (680)
T ss_dssp SEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCT--
T ss_pred hhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcc--
Confidence 4443 23444555554222 2334666654 9999998772 22223344444
Q ss_pred cCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-c------cccc----cccCccCccceeeeeccCCCCCchhhh
Q 048083 507 STRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-R------MFSA----KTSSFPRNLKIVTLSMSRLYWDPMEAL 575 (692)
Q Consensus 507 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~------~~p~----~~~~l~~~L~~L~L~~~~l~~~~~~~l 575 (692)
+|++|++++|......+..+..+++|+.|+++++. . .+|. .+..+ ++|++|++++|.+.......+
T Consensus 273 --~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~ 349 (680)
T 1ziw_A 273 --QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMF 349 (680)
T ss_dssp --TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTT
T ss_pred --cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCChhHh
Confidence 99999999998887777788888999999998754 1 2332 45566 899999999999888777778
Q ss_pred hcCCCCCeeeecCCccC
Q 048083 576 EKLCHLNILRIIGEAYE 592 (692)
Q Consensus 576 ~~l~~L~~L~l~~~~~~ 592 (692)
.++++|+.|++++|.+.
T Consensus 350 ~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTS 366 (680)
T ss_dssp TTCTTCCEEECTTCBSC
T ss_pred ccccCCcEEECCCCchh
Confidence 88999999998877643
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=5.6e-23 Score=220.30 Aligned_cols=271 Identities=18% Similarity=0.131 Sum_probs=214.0
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLY 439 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 439 (692)
..+++|++|++++|.++.+| . +..+++|++|++++|.+..+| ++.+++|++|++++|.++.+| ++++++|++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hHcCCCCEEEccCCCcccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 67899999999999999886 5 899999999999999999986 899999999999999999886 88999999999
Q ss_pred cccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeecc
Q 048083 440 LNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAW 519 (692)
Q Consensus 440 l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 519 (692)
+++|.+..++ ++.+++|+.| +++.+....+ .++.+++|+.|+++.+.......+.. +++|+.|++++|.
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L---~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~~~~----l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYL---NCARNTLTEI--DVSHNTQLTELDCHLNKKITKLDVTP----QTQLTTLDCSFNK 181 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEE---ECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCCCTT----CTTCCEEECCSSC
T ss_pred CCCCcCCeec--CCCCCcCCEE---ECCCCcccee--ccccCCcCCEEECCCCCccccccccc----CCcCCEEECCCCc
Confidence 9999988764 5666666555 7777764443 48889999999998772111002333 4599999999998
Q ss_pred CCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEE
Q 048083 520 RDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTC 598 (692)
Q Consensus 520 ~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 598 (692)
.+... +..+++|+.|+++++. ..++ +..+ ++|+.|++++|+++..+ +..+++|+.|++++|.+.+..
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l-~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTNNITKLD--LNQN-IQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSSCCSCCC--CTTC-TTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---
T ss_pred cceec---cccCCCCCEEECcCCcCCeec--cccC-CCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC---
Confidence 77753 7888999999999987 5553 6777 99999999999998743 789999999999999887642
Q ss_pred ecCCCCcccEE----------EeccCCCCcEEEecCCCccccceeecccccccC-CCc--------ChhhhhccCcEEEE
Q 048083 599 QAGGFPQLRVL----------KLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPE--------GLRNLAATLKDIVL 659 (692)
Q Consensus 599 ~~~~~~~L~~L----------~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~--------~~~~l~~sL~~L~i 659 (692)
.+.+++|+.| ++++|..+..+| .+.+++|+.|++++|..+. +|. .+.++++ |+.|++
T Consensus 250 -~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~-L~~L~L 325 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK-LVYLYL 325 (457)
T ss_dssp -CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT-CCEEEC
T ss_pred -HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhccc-CCEEEC
Confidence 4456666555 455555555666 4568999999999998776 554 2445566 777777
Q ss_pred ecCc
Q 048083 660 TNMP 663 (692)
Q Consensus 660 ~~c~ 663 (692)
++|.
T Consensus 326 ~~N~ 329 (457)
T 3bz5_A 326 NNTE 329 (457)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 6653
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=235.63 Aligned_cols=322 Identities=19% Similarity=0.204 Sum_probs=232.5
Q ss_pred CCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCC-CCCCChhhhccccccceeec
Q 048083 316 NTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVY-KPKLSDHVIGKLLHLSYLGL 394 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~l~~L~~L~l 394 (692)
....+|. . .++++.|.+.++.+ ....+..| .++++|++|+|++|. ...+++..|.++++|++|+|
T Consensus 15 ~L~~vP~-l---p~~l~~LdLs~N~i--------~~i~~~~~--~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 15 NLTQVPQ-V---LNTTERLLLSFNYI--------RTVTASSF--PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp CSSCCCS-S---CTTCCEEEEESCCC--------CEECSSSC--SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred CCCCCCC-C---CCCcCEEECCCCcC--------CccChhHC--cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 3344555 3 68999999999873 22456778 999999999999995 44664545999999999999
Q ss_pred cCCCcccc-CccccCCCCCeEEecCCcccee-cChh--hhccccCceeecccccccccc--cccCCCcccccccccccCC
Q 048083 395 RSTFIDSL-PNSVGNLRYLETLDVKHTKLRY-LPDS--IWKAKKLQHLYLNWIHSAISW--LNFSSLNNLQTLWGLSMGD 468 (692)
Q Consensus 395 ~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~--~~i~~l~~L~~L~~~~~~~ 468 (692)
++|.+..+ |..++++++|++|+|++|.++. +|.. +.++++|++|++++|.+...+ ..++.+++|+.| +++.
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L---~Ls~ 157 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI---DFSS 157 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE---EEES
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE---ECCC
Confidence 99999877 7789999999999999999884 5654 899999999999999987543 457777777777 6666
Q ss_pred Ccccc-cccccccc--cccccccccccc--hhhHHHHHHHhh--ccCCcceEEeeeccCCccccC---------------
Q 048083 469 DSLFN-QTFDFTKL--ASLRKLGVKCYS--QRVIDSIAELVS--RSTRLQSLKLVYAWRDDYSDI--------------- 526 (692)
Q Consensus 469 ~~~~~-~~~~l~~l--~~L~~L~l~~~~--~~~~~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~--------------- 526 (692)
+.... .+..+..+ ++|+.|+++.+. ...+..+..+.. ....|+.|++++|........
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 64222 23356666 789999998762 111111111110 011499999999854322111
Q ss_pred ---------------------CCCC--CCCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCC
Q 048083 527 ---------------------PFKA--QANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHL 581 (692)
Q Consensus 527 ---------------------~l~~--~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L 581 (692)
.+.. .++|+.|+++++. ...|..+..+ ++|+.|+|++|.+.......+..+++|
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 1111 2578899998876 4446667777 899999999998887777778889999
Q ss_pred CeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEe-cCCCccccceeecccccccC-CCcChhhhhccCcEEEE
Q 048083 582 NILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTV-QEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVL 659 (692)
Q Consensus 582 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i 659 (692)
+.|++++|.+... .+..+..+++|+.|+++++ .+..++. ....+++|+.|++++|. ++ ++. +++ |+.|.+
T Consensus 317 ~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~-L~~L~l 388 (844)
T 3j0a_A 317 QVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPS-IPDIFL 388 (844)
T ss_dssp CEEEEESCCCSCC-CSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCS-CSEEEE
T ss_pred CEEECCCCCCCcc-CHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcccC----CCC-cchhcc
Confidence 9999998877542 2335667889999999885 4655543 34568899999999854 55 553 566 888888
Q ss_pred ecCc
Q 048083 660 TNMP 663 (692)
Q Consensus 660 ~~c~ 663 (692)
++|.
T Consensus 389 ~~N~ 392 (844)
T 3j0a_A 389 SGNK 392 (844)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 8775
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=8.8e-23 Score=210.31 Aligned_cols=283 Identities=16% Similarity=0.138 Sum_probs=155.9
Q ss_pred eEEEEeecCCCCCCCChhhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceec-ChhhhccccCceeecc
Q 048083 364 LLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLN 441 (692)
Q Consensus 364 ~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~ 441 (692)
++++++++++.++.+|.. +. ++|++|++++|.+..++ ..+.++++|++|++++|.++.+ |..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~-~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE-IS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSC-CC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCC-CC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 455555555555555544 22 35555555555555543 2455555555555555555544 4445555555555555
Q ss_pred cccccccccccCCCcccccccccccCCCccccccc-ccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccC
Q 048083 442 WIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTF-DFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWR 520 (692)
Q Consensus 442 ~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 520 (692)
+|.+..+|..+. ++|+.| +++++....+|. .+..+++|+.|+++++..............+ +|+.|++++|..
T Consensus 111 ~n~l~~l~~~~~--~~L~~L---~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVEL---RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEE---ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCcCCccCcccc--ccCCEE---ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 555555444433 233333 444443333322 2455555555555544111000000001111 566666666655
Q ss_pred CccccCCCCCCCCccEEEEcccc-ccc-cccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEE
Q 048083 521 DDYSDIPFKAQANLQELYLRGAL-RMF-SAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTC 598 (692)
Q Consensus 521 ~~~~~~~l~~~~~L~~L~L~~~~-~~~-p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 598 (692)
+..... + .++|++|+++++. ..+ +..+..+ ++|+.|++++|.+.......+..+++|+.|++++|.+. .++.
T Consensus 185 ~~l~~~-~--~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~ 258 (332)
T 2ft3_A 185 TGIPKD-L--PETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--RVPA 258 (332)
T ss_dssp SSCCSS-S--CSSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--BCCT
T ss_pred CccCcc-c--cCCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--ecCh
Confidence 543221 1 2567777777765 333 3456666 77888888888777766666777788888888777665 3333
Q ss_pred ecCCCCcccEEEeccCCCCcEEEecC-------CCccccceeeccccccc--C-CCcChhhhhccCcEEEEecCc
Q 048083 599 QAGGFPQLRVLKLWNLSSLEEWTVQE-------AAMPRLRELEIRSCNKL--K-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 599 ~~~~~~~L~~L~l~~~~~l~~l~~~~-------~~~~~L~~L~l~~c~~l--~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
....+++|+.|+++++ .++.++... ..+++|+.|++.+|+.. . .|..+..+++ |+.+++++|.
T Consensus 259 ~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~-L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD-RLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC-STTEEC----
T ss_pred hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccch-hhhhhccccc
Confidence 4556777888888774 355554321 11467888888888765 3 6667778888 8888888764
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.1e-22 Score=207.29 Aligned_cols=279 Identities=17% Similarity=0.159 Sum_probs=145.1
Q ss_pred eEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceec-ChhhhccccCceeecc
Q 048083 364 LLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLN 441 (692)
Q Consensus 364 ~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~ 441 (692)
++++++++++.++.+|.. +. ++|++|++++|.+..+|. .++++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-LP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-CC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCcc-CC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 344444444444444433 21 344444444444444433 344444444444444444433 3444444444444444
Q ss_pred cccccccccccCCCcccccccccccCCCccccccc-ccccccccccccccccch----hhHHHHHHHhhccCCcceEEee
Q 048083 442 WIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTF-DFTKLASLRKLGVKCYSQ----RVIDSIAELVSRSTRLQSLKLV 516 (692)
Q Consensus 442 ~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~----~~~~~l~~~~~~~~~L~~L~l~ 516 (692)
+|.+..+|..+. ++|+.| +++++.....+. .+.++++|+.|+++++.. .....+..+ ++|+.|+++
T Consensus 109 ~n~l~~l~~~~~--~~L~~L---~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l----~~L~~L~l~ 179 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQEL---RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM----KKLSYIRIA 179 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEE---ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC----TTCCEEECC
T ss_pred CCcCCccChhhc--ccccEE---ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC----CCcCEEECC
Confidence 444444433332 222222 333332222111 234444444444444311 111222223 377777777
Q ss_pred eccCCccccCCCCCCCCccEEEEcccc-c-cccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCcc
Q 048083 517 YAWRDDYSDIPFKAQANLQELYLRGAL-R-MFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGK 594 (692)
Q Consensus 517 ~~~~~~~~~~~l~~~~~L~~L~L~~~~-~-~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 594 (692)
+|......... .++|+.|+++++. . ..|..+..+ ++|++|++++|.+.......+..+++|+.|++++|.+.
T Consensus 180 ~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-- 253 (330)
T 1xku_A 180 DTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-- 253 (330)
T ss_dssp SSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--
T ss_pred CCccccCCccc---cccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--
Confidence 77655432211 2677778877765 3 335566666 77888888888777655556777788888888777665
Q ss_pred EEEEecCCCCcccEEEeccCCCCcEEEecCC-------CccccceeecccccccC---CCcChhhhhccCcEEEEecC
Q 048083 595 KMTCQAGGFPQLRVLKLWNLSSLEEWTVQEA-------AMPRLRELEIRSCNKLK---PPEGLRNLAATLKDIVLTNM 662 (692)
Q Consensus 595 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~l~~c~~l~---~p~~~~~l~~sL~~L~i~~c 662 (692)
.++.....+++|+.|+++++ .++.++...- ..++|+.|++.+++... .|..+..+++ |+.++++++
T Consensus 254 ~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~-l~~l~L~~N 329 (330)
T 1xku_A 254 KVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV-RAAVQLGNY 329 (330)
T ss_dssp SCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC-GGGEEC---
T ss_pred cCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc-eeEEEeccc
Confidence 33334556777888888764 3555543211 24677888888876432 4556667777 888877764
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.3e-22 Score=207.96 Aligned_cols=223 Identities=21% Similarity=0.200 Sum_probs=138.6
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLY 439 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 439 (692)
...+.++.|+|++|.++.+|+. ++++++|++|++++|.+..+|..++++++|++|++++|.++.+|..+.++++|++|+
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 3457889999999999999988 888999999999999998999889999999999999998888998999999999999
Q ss_pred ccccccc-ccccccCC------CcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcce
Q 048083 440 LNWIHSA-ISWLNFSS------LNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQS 512 (692)
Q Consensus 440 l~~~~~~-~~~~~i~~------l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 512 (692)
+++|... .+|..++. +..+..|+.++++.+....+|..++.++ +|+.
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~--------------------------~L~~ 210 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ--------------------------NLKS 210 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCT--------------------------TCCE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCC--------------------------CCCE
Confidence 9987654 45554433 1112222222343333223333344444 5555
Q ss_pred EEeeeccCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCc
Q 048083 513 LKLVYAWRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEA 590 (692)
Q Consensus 513 L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 590 (692)
|++++|..... +..+..+++|+.|++++|. ..+|.++..+ ++|+.|+|++|.+....+..+..+++|+.|++++|.
T Consensus 211 L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 211 LKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGR-APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp EEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCC-CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred EEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCC-CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 55555544432 2234455555555555543 4445445555 555555555555544444445555555555555554
Q ss_pred cCccEEEEecCCCCcccEEEec
Q 048083 591 YEGKKMTCQAGGFPQLRVLKLW 612 (692)
Q Consensus 591 ~~~~~~~~~~~~~~~L~~L~l~ 612 (692)
+.+ .+|..+..+++|+.+.+.
T Consensus 289 ~~~-~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 289 NLS-RLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TCC-CCCGGGGGSCTTCEEECC
T ss_pred chh-hccHHHhhccCceEEeCC
Confidence 433 223334445555555443
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=7.9e-22 Score=202.14 Aligned_cols=228 Identities=24% Similarity=0.215 Sum_probs=175.1
Q ss_pred ccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCcccccccccc
Q 048083 386 LLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLS 465 (692)
Q Consensus 386 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~ 465 (692)
..+++.|++++|.+..+|..++++++|++|++++|.++.+|..++++++|++|++++|.+..+|..++.+++|+.| +
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L---~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL---S 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE---E
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE---E
Confidence 4789999999999999999999999999999999999999999999999999999999877776666665555555 3
Q ss_pred cCCCc-ccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-
Q 048083 466 MGDDS-LFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL- 543 (692)
Q Consensus 466 ~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~- 543 (692)
++++. ...+|..+... .+ ...+..+++|+.|+++++.
T Consensus 157 L~~n~~~~~~p~~~~~~------~~-----------------------------------~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 157 IRACPELTELPEPLAST------DA-----------------------------------SGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp EEEETTCCCCCSCSEEE------C------------------------------------CCCEEESTTCCEEEEEEECC
T ss_pred CCCCCCccccChhHhhc------cc-----------------------------------hhhhccCCCCCEEECcCCCc
Confidence 33321 11111111110 00 0113345666666666665
Q ss_pred ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEec
Q 048083 544 RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQ 623 (692)
Q Consensus 544 ~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 623 (692)
..+|.++..+ ++|++|+|++|.+... ++.+..+++|+.|++++|.+.+ .++.....+++|+.|++++|.....+|..
T Consensus 196 ~~lp~~l~~l-~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 196 RSLPASIANL-QNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp CCCCGGGGGC-TTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred CcchHhhcCC-CCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 5667777777 8888888888888763 3468888899999998877765 34446678899999999999888888888
Q ss_pred CCCccccceeecccccccC-CCcChhhhhccCcEEEEec
Q 048083 624 EAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTN 661 (692)
Q Consensus 624 ~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~ 661 (692)
.+.+++|+.|++++|+.+. +|..+.++++ |+.+.+..
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~-L~~l~l~~ 310 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPA-NCIILVPP 310 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCT-TCEEECCG
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccC-ceEEeCCH
Confidence 8889999999999999999 9999999999 99998764
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=5.1e-22 Score=204.54 Aligned_cols=246 Identities=15% Similarity=0.106 Sum_probs=141.2
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecCh-hhhccccCcee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHL 438 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L 438 (692)
.++++|++|++++|.++.+++..+..+++|++|++++|.+..+|..+. ++|++|++++|.++.+|. .+.++++|++|
T Consensus 75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence 555555555555555554433225555555555555555555554433 455555555555554443 34555555555
Q ss_pred ecccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccc-hhhHHHHHHHhhccCCcceEEeee
Q 048083 439 YLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYS-QRVIDSIAELVSRSTRLQSLKLVY 517 (692)
Q Consensus 439 ~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~ 517 (692)
++++|.+...+ ..+..+..+ +|+.|+++++. ..++..+ .++|++|++++
T Consensus 153 ~l~~n~l~~~~-----------------------~~~~~~~~l-~L~~L~l~~n~l~~l~~~~------~~~L~~L~l~~ 202 (332)
T 2ft3_A 153 EMGGNPLENSG-----------------------FEPGAFDGL-KLNYLRISEAKLTGIPKDL------PETLNELHLDH 202 (332)
T ss_dssp ECCSCCCBGGG-----------------------SCTTSSCSC-CCSCCBCCSSBCSSCCSSS------CSSCSCCBCCS
T ss_pred ECCCCccccCC-----------------------CCcccccCC-ccCEEECcCCCCCccCccc------cCCCCEEECCC
Confidence 55555443111 111123333 44444444431 0111100 13788888888
Q ss_pred ccCCccccCCCCCCCCccEEEEcccc-ccc-cccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccE
Q 048083 518 AWRDDYSDIPFKAQANLQELYLRGAL-RMF-SAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKK 595 (692)
Q Consensus 518 ~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~-p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 595 (692)
|.........+..+++|+.|+++++. ..+ +.++..+ ++|+.|++++|.+.. .+..+..+++|+.|++++|.+....
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL-PTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC-TTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC-CCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccC
Confidence 87777777778888889999988876 444 3466777 889999999998874 3445788899999999888776432
Q ss_pred EEEe-----cCCCCcccEEEeccCCCC--cEEEecCCCccccceeeccccc
Q 048083 596 MTCQ-----AGGFPQLRVLKLWNLSSL--EEWTVQEAAMPRLRELEIRSCN 639 (692)
Q Consensus 596 ~~~~-----~~~~~~L~~L~l~~~~~l--~~l~~~~~~~~~L~~L~l~~c~ 639 (692)
.... ...+++|+.|++.+++.. ...+.....+++|+.|++++|.
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 1100 012577899999987632 2223334567889999988865
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.4e-22 Score=206.60 Aligned_cols=223 Identities=19% Similarity=0.197 Sum_probs=109.6
Q ss_pred cccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecC-CCCC-CCChhhhccccccceeeccCCCcc-ccCcc
Q 048083 329 CHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEG-VYKP-KLSDHVIGKLLHLSYLGLRSTFID-SLPNS 405 (692)
Q Consensus 329 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~-~l~~~~~~~l~~L~~L~l~~~~i~-~lp~~ 405 (692)
.+++.|.+.++.+... ..++..| ..+++|++|++++ |.+. .+|.. ++++++|++|++++|.+. .+|..
T Consensus 50 ~~l~~L~L~~~~l~~~------~~~~~~l--~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP------YPIPSSL--ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSC------EECCGGG--GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCC------cccChhH--hCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHH
Confidence 4566666655542110 0123445 5566666666663 4444 44444 566666666666666554 45555
Q ss_pred ccCCCCCeEEecCCccce-ecChhhhccccCceeeccccccc-ccccccCCCc-ccccccccccCCCccc-ccccccccc
Q 048083 406 VGNLRYLETLDVKHTKLR-YLPDSIWKAKKLQHLYLNWIHSA-ISWLNFSSLN-NLQTLWGLSMGDDSLF-NQTFDFTKL 481 (692)
Q Consensus 406 ~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~i~~l~-~L~~L~~~~~~~~~~~-~~~~~l~~l 481 (692)
+.++++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..++.+. +|+.| +++.+... ..|..+..+
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L---~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM---TISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE---ECCSSEEEEECCGGGGGC
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE---ECcCCeeeccCChHHhCC
Confidence 566666666666666555 45555666666666666665554 4444444433 33333 33333211 111111111
Q ss_pred cccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCcccee
Q 048083 482 ASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIV 560 (692)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L 560 (692)
.|+.|++++|.+....+..+..+++|+.|+++++. ...+..+..+ ++|++|
T Consensus 198 ---------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l-~~L~~L 249 (313)
T 1ogq_A 198 ---------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGL 249 (313)
T ss_dssp ---------------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCC-TTCCEE
T ss_pred ---------------------------cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCccccc-CCCCEE
Confidence 25555555554444444445555555555555544 2222223344 555555
Q ss_pred eeeccCCCCCchhhhhcCCCCCeeeecCCcc
Q 048083 561 TLSMSRLYWDPMEALEKLCHLNILRIIGEAY 591 (692)
Q Consensus 561 ~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 591 (692)
+|++|.+++..+..+..+++|+.|++++|.+
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 5555555544444455555555555554443
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.5e-21 Score=220.13 Aligned_cols=134 Identities=23% Similarity=0.195 Sum_probs=111.8
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
+..++++.+. .. ....++...|.++++|++|.+.++.+ ..+.+..| .++++|++|+|++|.++.+|+
T Consensus 51 p~~~~~LdLs-~N--~i~~l~~~~f~~l~~L~~L~Ls~N~i--------~~i~~~~f--~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 51 PFSTKNLDLS-FN--PLRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAY--QSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CTTCCEEECT-TS--CCCEECTTTTTTCTTCCEEECTTCCC--------CEECTTTT--TTCTTCCEEECTTCCCCEECG
T ss_pred CcCCCEEEee-CC--CCCCCCHHHHhCCCCCCEEECCCCcC--------CCcChhHh--cCCCCCCEEEccCCcCCCCCH
Confidence 4577888877 33 34456666678999999999998872 22456778 999999999999999999998
Q ss_pred hhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCcccee--cChhhhccccCceeecccccccc
Q 048083 381 HVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRY--LPDSIWKAKKLQHLYLNWIHSAI 447 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~ 447 (692)
.+|.++++|++|++++|.+..+|+ .++++++|++|++++|.++. +|..+..+++|++|++++|.+..
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 778999999999999999999885 48999999999999998874 57888999999999999987653
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.6e-21 Score=200.80 Aligned_cols=261 Identities=16% Similarity=0.154 Sum_probs=137.7
Q ss_pred eEEEEeecCCCCCCCChhhhccccccceeeccCCCcccc-CccccCCCCCeEEecCCccceecChhhhccccCceeeccc
Q 048083 364 LLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSL-PNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNW 442 (692)
Q Consensus 364 ~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 442 (692)
+|++|++++|.++.+++..+..+++|++|++++|.+..+ |..++++++|++|++++|.++.+|..+. ++|++|++++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~ 130 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE 130 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC
Confidence 344444444444444432244444444444444444443 3344444444444444444444443332 3444444444
Q ss_pred cccccccc-ccCCCcccccccccccCCCccc---ccccccccccccccccccccc-hhhHHHHHHHhhccCCcceEEeee
Q 048083 443 IHSAISWL-NFSSLNNLQTLWGLSMGDDSLF---NQTFDFTKLASLRKLGVKCYS-QRVIDSIAELVSRSTRLQSLKLVY 517 (692)
Q Consensus 443 ~~~~~~~~-~i~~l~~L~~L~~~~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~ 517 (692)
|.+..++. .+..+++|+.| +++.+... ..+..+..+++|+.|+++++. ..++..+ .++|++|++++
T Consensus 131 n~l~~~~~~~~~~l~~L~~L---~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~------~~~L~~L~l~~ 201 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVV---ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL------PPSLTELHLDG 201 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEE---ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC------CTTCSEEECTT
T ss_pred CcccccCHhHhcCCccccEE---ECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc------cccCCEEECCC
Confidence 44443322 23333333333 33333210 112234455555555555441 1111111 13788888888
Q ss_pred ccCCccccCCCCCCCCccEEEEcccc-ccc-cccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccE
Q 048083 518 AWRDDYSDIPFKAQANLQELYLRGAL-RMF-SAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKK 595 (692)
Q Consensus 518 ~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~-p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 595 (692)
|......+..+..+++|+.|+++++. ..+ +..+..+ ++|++|+|++|.+.. .+..+..+++|+.|++++|.+....
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS-TTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC-CCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCccC
Confidence 87777666777788888888888876 333 3456666 788888888888774 3445778888888888887765422
Q ss_pred EEE-----ecCCCCcccEEEeccCCCCcEE---EecCCCccccceeecccc
Q 048083 596 MTC-----QAGGFPQLRVLKLWNLSSLEEW---TVQEAAMPRLRELEIRSC 638 (692)
Q Consensus 596 ~~~-----~~~~~~~L~~L~l~~~~~l~~l---~~~~~~~~~L~~L~l~~c 638 (692)
... .....++|+.|++.+++ +..+ |.....+++|+.+++++|
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 110 01124778888888765 3322 223345677888888775
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1.2e-20 Score=208.05 Aligned_cols=255 Identities=20% Similarity=0.112 Sum_probs=186.6
Q ss_pred cceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecc
Q 048083 362 LVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLN 441 (692)
Q Consensus 362 ~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 441 (692)
..++++|+++++.++.+|.. +. ++|++|++++|.+..+|. .+++|++|+|++|+++.+|. .+++|++|+++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~-l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSC-CC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCCcEEEecCCCcCccChh-hC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 34678888888888888776 44 688888888888888876 46788888888888888776 67788888888
Q ss_pred cccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCC
Q 048083 442 WIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRD 521 (692)
Q Consensus 442 ~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 521 (692)
+|.+..+|. .+++|+.| +++++....+|.. +++|+.|+++++.-.. ++....+|+.|++++|.++
T Consensus 110 ~N~l~~l~~---~l~~L~~L---~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~------l~~~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKL---WIFGNQLTSLPVL---PPGLQELSVSDNQLAS------LPALPSELCKLWAYNNQLT 174 (622)
T ss_dssp SCCCCCCCC---CCTTCCEE---ECCSSCCSCCCCC---CTTCCEEECCSSCCSC------CCCCCTTCCEEECCSSCCS
T ss_pred CCcCCCCCC---CCCCcCEE---ECCCCCCCcCCCC---CCCCCEEECcCCcCCC------cCCccCCCCEEECCCCCCC
Confidence 887777665 33444444 6666654444432 4778888887762111 1112348889999988776
Q ss_pred ccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEec
Q 048083 522 DYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQA 600 (692)
Q Consensus 522 ~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 600 (692)
... ..+++|+.|++++|. ..+|. .+++|+.|++++|.++... ..+++|+.|++++|.+.+. +
T Consensus 175 ~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~l--p--- 237 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSL--P--- 237 (622)
T ss_dssp CCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCC--C---
T ss_pred CCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcC--C---
Confidence 643 456789999999877 55553 2378999999999887533 2357899999998887652 2
Q ss_pred CCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 601 GGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 601 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
..+++|+.|+++++ .++.+|. .+++|+.|++++| .++ +|..+.++++ |+.|++++|+
T Consensus 238 ~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~-L~~L~L~~N~ 295 (622)
T 3g06_A 238 VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSS-ETTVNLEGNP 295 (622)
T ss_dssp CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCT-TCEEECCSCC
T ss_pred CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccc-cCEEEecCCC
Confidence 56789999999985 5777765 5788999999986 567 8888999998 9999999886
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=2.2e-20 Score=199.95 Aligned_cols=300 Identities=18% Similarity=0.174 Sum_probs=197.4
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
+...+.+.+..+. ...++. .+++|+.|.+.++.+.. ++ .-.++|++|++++|.++.+|
T Consensus 90 ~~~L~~L~l~~n~---l~~lp~----~~~~L~~L~l~~n~l~~-------------l~-~~~~~L~~L~L~~n~l~~lp- 147 (454)
T 1jl5_A 90 PPHLESLVASCNS---LTELPE----LPQSLKSLLVDNNNLKA-------------LS-DLPPLLEYLGVSNNQLEKLP- 147 (454)
T ss_dssp CTTCSEEECCSSC---CSSCCC----CCTTCCEEECCSSCCSC-------------CC-SCCTTCCEEECCSSCCSSCC-
T ss_pred cCCCCEEEccCCc---CCcccc----ccCCCcEEECCCCccCc-------------cc-CCCCCCCEEECcCCCCCCCc-
Confidence 3566777766332 122333 35788888888776211 10 12268899999999988877
Q ss_pred hhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCccccc
Q 048083 381 HVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQT 460 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~ 460 (692)
. ++.+++|++|++++|.+..+|..+ .+|++|++++|.++.+| .++++++|++|++++|.+..+|... .+|+.
T Consensus 148 ~-~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~ 219 (454)
T 1jl5_A 148 E-LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLES 219 (454)
T ss_dssp C-CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCE
T ss_pred c-cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccE
Confidence 5 889999999999999888888643 58999999999888887 5888999999999998887665433 23444
Q ss_pred ccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEc
Q 048083 461 LWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLR 540 (692)
Q Consensus 461 L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 540 (692)
++++++....+| .++.+++|+.|+++++.-.. ++...++|+.|++++|....... .+++|+.|+++
T Consensus 220 ---L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~------l~~~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls 285 (454)
T 1jl5_A 220 ---IVAGNNILEELP-ELQNLPFLTTIYADNNLLKT------LPDLPPSLEALNVRDNYLTDLPE----LPQSLTFLDVS 285 (454)
T ss_dssp ---EECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS------CCSCCTTCCEEECCSSCCSCCCC----CCTTCCEEECC
T ss_pred ---EECcCCcCCccc-ccCCCCCCCEEECCCCcCCc------ccccccccCEEECCCCcccccCc----ccCcCCEEECc
Confidence 477777644555 58888899999988762111 11122489999999887665321 23688889988
Q ss_pred ccc-ccccccccCccCccceeeeeccCCCCCchhhhhcC-CCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCc
Q 048083 541 GAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKL-CHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLE 618 (692)
Q Consensus 541 ~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 618 (692)
++. ..+| .+|++|+.|++++|.+.. +..+ ++|+.|++++|.+.+ ++ ..+++|+.|+++++ .++
T Consensus 286 ~N~l~~l~----~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~L~~N-~l~ 350 (454)
T 1jl5_A 286 ENIFSGLS----ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE--LP---ALPPRLERLIASFN-HLA 350 (454)
T ss_dssp SSCCSEES----CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSS-CCS
T ss_pred CCccCccc----CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc--cc---ccCCcCCEEECCCC-ccc
Confidence 876 4444 234788888888887764 2234 478888888877764 22 23678888888875 466
Q ss_pred EEEecCCCccccceeecccccccC---CCcChhhh-------------hccCcEEEEecCc
Q 048083 619 EWTVQEAAMPRLRELEIRSCNKLK---PPEGLRNL-------------AATLKDIVLTNMP 663 (692)
Q Consensus 619 ~l~~~~~~~~~L~~L~l~~c~~l~---~p~~~~~l-------------~~sL~~L~i~~c~ 663 (692)
.+|. .+++|+.|++++|.-.. +|..+..+ ++ |+.|++++++
T Consensus 351 ~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~-L~~L~ls~N~ 407 (454)
T 1jl5_A 351 EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN-LKQLHVETNP 407 (454)
T ss_dssp CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCc-CCEEECCCCc
Confidence 6664 46788888888865433 55666655 66 8888887765
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=2.3e-21 Score=197.50 Aligned_cols=246 Identities=17% Similarity=0.162 Sum_probs=177.4
Q ss_pred ceEEEEeecCCCCC---CCChhhhccccccceeeccC-CCcc-ccCccccCCCCCeEEecCCccce-ecChhhhccccCc
Q 048083 363 VLLTVLDLEGVYKP---KLSDHVIGKLLHLSYLGLRS-TFID-SLPNSVGNLRYLETLDVKHTKLR-YLPDSIWKAKKLQ 436 (692)
Q Consensus 363 ~~L~~L~L~~~~~~---~l~~~~~~~l~~L~~L~l~~-~~i~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~ 436 (692)
.+++.|+++++.+. .+|.. +.++++|++|++++ |.+. .+|..++++++|++|++++|.++ .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 68999999999998 47877 99999999999995 7765 78888999999999999999998 8899999999999
Q ss_pred eeeccccccc-ccccccCCCcccccccccccCCCccc-ccccccccccccccccccccchhhHHHHHHHhhccCCcceEE
Q 048083 437 HLYLNWIHSA-ISWLNFSSLNNLQTLWGLSMGDDSLF-NQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLK 514 (692)
Q Consensus 437 ~L~l~~~~~~-~~~~~i~~l~~L~~L~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 514 (692)
+|++++|.+. .+|..+..+++|+.| +++.+... ..|..+..++ ++|+.|+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L---~L~~N~l~~~~p~~l~~l~-------------------------~~L~~L~ 180 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGI---TFDGNRISGAIPDSYGSFS-------------------------KLFTSMT 180 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEE---ECCSSCCEEECCGGGGCCC-------------------------TTCCEEE
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeE---ECcCCcccCcCCHHHhhhh-------------------------hcCcEEE
Confidence 9999999887 566666666666655 56555422 2333333332 1566666
Q ss_pred eeeccCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccC
Q 048083 515 LVYAWRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYE 592 (692)
Q Consensus 515 l~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 592 (692)
+++|......+..+..++ |+.|+++++. ...|..+..+ ++|+.|+|++|.+.... +.+..+++|+.|++++|.+.
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTT-SCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCE
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcC-CCCCEEECCCCceeeec-CcccccCCCCEEECcCCccc
Confidence 666655555555566665 8888888776 4556666677 78888888888776533 34677778888888777765
Q ss_pred ccEEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC
Q 048083 593 GKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK 642 (692)
Q Consensus 593 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 642 (692)
+. .+..+..+++|+.|+++++.--..+|.. +.+++|+.|++.+++.+.
T Consensus 258 ~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 258 GT-LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EC-CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred Cc-CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 32 3334556777777777775422244443 567777777777776655
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=193.11 Aligned_cols=261 Identities=17% Similarity=0.162 Sum_probs=132.8
Q ss_pred EEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceec-ChhhhccccCceeeccccc
Q 048083 367 VLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLNWIH 444 (692)
Q Consensus 367 ~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~ 444 (692)
+.+++++.++.+|.. +. .+|++|++++|.+..+|. .+.++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 35 ~c~~~~~~l~~iP~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSG-LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTT-CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCccccccc-cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 344455555555543 22 245555555555554443 345555555555555555543 2335555555555555554
Q ss_pred ccccccc-cCCCcccccccccccCCCccccccc--ccccccccccccccccchhhHHHHHHHhhccCCcceEEeeecc-C
Q 048083 445 SAISWLN-FSSLNNLQTLWGLSMGDDSLFNQTF--DFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAW-R 520 (692)
Q Consensus 445 ~~~~~~~-i~~l~~L~~L~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~ 520 (692)
+..+|.. +..+++|+.| +++++....+|. .+..++ +|+.|++++|. .
T Consensus 112 l~~~~~~~~~~l~~L~~L---~L~~n~l~~l~~~~~~~~l~--------------------------~L~~L~l~~n~~~ 162 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFL---NLLGNPYKTLGETSLFSHLT--------------------------KLQILRVGNMDTF 162 (353)
T ss_dssp CSSCCHHHHTTCTTCSEE---ECTTCCCSSSCSSCSCTTCT--------------------------TCCEEEEEESSSC
T ss_pred CCcCCHhHhCCCccCCEE---ECCCCCCcccCchhhhccCC--------------------------CCcEEECCCCccc
Confidence 4444332 3333333333 333332212111 222233 45555555552 3
Q ss_pred CccccCCCCCCCCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEE
Q 048083 521 DDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTC 598 (692)
Q Consensus 521 ~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 598 (692)
.......+..+++|+.|+++++. ...|..+..+ ++|++|++++|.+.......+..+++|+.|++++|.+.+.....
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 33334455556666666666554 2335555565 66666666666665433333445666777777666655422110
Q ss_pred --ecCCCCcccEEEeccCCCCc-----EEEecCCCccccceeecccccccC-CCcCh-hhhhccCcEEEEecCc
Q 048083 599 --QAGGFPQLRVLKLWNLSSLE-----EWTVQEAAMPRLRELEIRSCNKLK-PPEGL-RNLAATLKDIVLTNMP 663 (692)
Q Consensus 599 --~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~-~~l~~sL~~L~i~~c~ 663 (692)
.....+.++.+++.++. +. .+|.....+++|+.|++++| .++ +|..+ ..+++ |++|++++|+
T Consensus 242 l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~-L~~L~L~~N~ 312 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTS-LQKIWLHTNP 312 (353)
T ss_dssp -----CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTT-CCEEECCSSC
T ss_pred cccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCC-CCEEEeeCCC
Confidence 11234556666666542 22 23333445778888888875 456 77664 67777 8888887764
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=192.58 Aligned_cols=255 Identities=16% Similarity=0.168 Sum_probs=184.7
Q ss_pred cccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCC
Q 048083 318 KLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRST 397 (692)
Q Consensus 318 ~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~ 397 (692)
..+|... .++|+.|.+.++.+. .+.+..| .++++|++|++++|.++.+++..+.++++|++|++++|
T Consensus 44 ~~iP~~~---~~~L~~L~l~~n~i~--------~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 44 NSIPSGL---TEAVKSLDLSNNRIT--------YISNSDL--QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp SSCCTTC---CTTCCEEECTTSCCC--------EECTTTT--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccccccc---cccCcEEECCCCcCc--------ccCHHHh--ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 4455544 358999999888732 2345567 89999999999999998776655899999999999999
Q ss_pred CccccCcc-ccCCCCCeEEecCCccceecCh--hhhccccCceeeccccc-cccc-ccccCCCcccccccccccCCCccc
Q 048083 398 FIDSLPNS-VGNLRYLETLDVKHTKLRYLPD--SIWKAKKLQHLYLNWIH-SAIS-WLNFSSLNNLQTLWGLSMGDDSLF 472 (692)
Q Consensus 398 ~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~-~~~~-~~~i~~l~~L~~L~~~~~~~~~~~ 472 (692)
.+..+|.. ++++++|++|++++|.++.+|. .+.++++|++|++++|. ...+ +..+..+++|+.| +++.+...
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L---~l~~n~l~ 187 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL---EIDASDLQ 187 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE---EEEETTCC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE---ECCCCCcC
Confidence 99998876 7899999999999999998886 68899999999999984 4444 3456666666666 66666533
Q ss_pred cc-ccccccccccccccccccc-hhhHHH-HHHHhhccCCcceEEeeeccCCccccCCC---CCCCCccEEEEcccc---
Q 048083 473 NQ-TFDFTKLASLRKLGVKCYS-QRVIDS-IAELVSRSTRLQSLKLVYAWRDDYSDIPF---KAQANLQELYLRGAL--- 543 (692)
Q Consensus 473 ~~-~~~l~~l~~L~~L~l~~~~-~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~L~~~~--- 543 (692)
.. |..++.+++|+.|+++++. ...+.. +..+. +|+.|++++|.........+ ...+.++.++++++.
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~----~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS----SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT----TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcc----cccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 33 4568889999999998773 223332 22344 99999999997766543332 234567777776643
Q ss_pred ---ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCc
Q 048083 544 ---RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEG 593 (692)
Q Consensus 544 ---~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 593 (692)
..+|.++..+ ++|+.|++++|.++..+...+..+++|+.|++++|.+..
T Consensus 264 ~~l~~l~~~l~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 264 ESLFQVMKLLNQI-SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHHHHTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhhHHHHhcc-cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 2356666666 778888888887776554445777778888887776543
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=1.2e-21 Score=200.07 Aligned_cols=279 Identities=15% Similarity=0.123 Sum_probs=197.6
Q ss_pred hhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChh
Q 048083 349 ISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDS 428 (692)
Q Consensus 349 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~ 428 (692)
+...+...+ ..+++|++|++++|.++.+++..+..+++|++|++++|.+..+++ +..+++|++|++++|.++.+|.
T Consensus 22 l~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~- 97 (317)
T 3o53_A 22 LKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV- 97 (317)
T ss_dssp HHHHHHHHH--TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE-
T ss_pred hhhhHHHHh--ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC-
Confidence 444667788 889999999999999998886659999999999999999988776 8999999999999999997763
Q ss_pred hhccccCceeecccccccccccccCCCcccccccccccCCCccccccc-ccccccccccccccccchhhHHHHHHHhhcc
Q 048083 429 IWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTF-DFTKLASLRKLGVKCYSQRVIDSIAELVSRS 507 (692)
Q Consensus 429 ~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~ 507 (692)
.++|++|++++|.+...+.. .+++|+.| +++.+.....+. .++.++
T Consensus 98 ---~~~L~~L~l~~n~l~~~~~~--~~~~L~~L---~l~~N~l~~~~~~~~~~l~------------------------- 144 (317)
T 3o53_A 98 ---GPSIETLHAANNNISRVSCS--RGQGKKNI---YLANNKITMLRDLDEGCRS------------------------- 144 (317)
T ss_dssp ---CTTCCEEECCSSCCSEEEEC--CCSSCEEE---ECCSSCCCSGGGBCTGGGS-------------------------
T ss_pred ---CCCcCEEECCCCccCCcCcc--ccCCCCEE---ECCCCCCCCccchhhhccC-------------------------
Confidence 48999999999988766543 24444444 666664322211 233333
Q ss_pred CCcceEEeeeccCCccccCCC-CCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeee
Q 048083 508 TRLQSLKLVYAWRDDYSDIPF-KAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILR 585 (692)
Q Consensus 508 ~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 585 (692)
+|+.|++++|.+....+..+ ..+++|+.|+++++. ..+|.. ..+ ++|++|+|++|.+.... +.+..+++|+.|+
T Consensus 145 -~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l-~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~ 220 (317)
T 3o53_A 145 -RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVF-AKLKTLDLSSNKLAFMG-PEFQSAAGVTWIS 220 (317)
T ss_dssp -SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCC-TTCCEEECCSSCCCEEC-GGGGGGTTCSEEE
T ss_pred -CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-ccc-ccCCEEECCCCcCCcch-hhhcccCcccEEE
Confidence 66667777766665544444 356788888888876 555433 235 88999999999887644 3478889999999
Q ss_pred ecCCccCccEEEEecCCCCcccEEEeccCCCC-cEEEecCCCccccceeecccccccC--CCcChhhhhccCcE---EEE
Q 048083 586 IIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSL-EEWTVQEAAMPRLRELEIRSCNKLK--PPEGLRNLAATLKD---IVL 659 (692)
Q Consensus 586 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~c~~l~--~p~~~~~l~~sL~~---L~i 659 (692)
+++|.+. .++.....+++|+.|++++++-. ..++.....+++|+.|++.+|+.++ .|... ..+. +.. ...
T Consensus 221 L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~-~~~~-~~~~~~~cc 296 (317)
T 3o53_A 221 LRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC-TVPT-LGHYGAYCC 296 (317)
T ss_dssp CTTSCCC--EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC-SSTT-CEEETTEEE
T ss_pred CcCCccc--chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc-CCCc-eecccceee
Confidence 9888776 34545667889999999886533 2445455678899999999888777 33322 2222 222 334
Q ss_pred ecCchHHHHHHhh
Q 048083 660 TNMPSTFGEEAQR 672 (692)
Q Consensus 660 ~~c~~~~~~~~~~ 672 (692)
...+..|......
T Consensus 297 ~~l~~~~~~~~~~ 309 (317)
T 3o53_A 297 EDLPAPFADRLIA 309 (317)
T ss_dssp BCCTTTHHHHHHH
T ss_pred ccCChhHHHHHHh
Confidence 4455556555443
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=5.7e-20 Score=186.96 Aligned_cols=193 Identities=20% Similarity=0.218 Sum_probs=103.9
Q ss_pred EEeecCCCCCCCChhhhccccccceeeccCCCccccCcc-ccCCCCCeEEecCCccceec---ChhhhccccCceeeccc
Q 048083 367 VLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS-VGNLRYLETLDVKHTKLRYL---PDSIWKAKKLQHLYLNW 442 (692)
Q Consensus 367 ~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~l---p~~~~~l~~L~~L~l~~ 442 (692)
.++.+++.++.+|.. +. .+|++|++++|.+..+|.. +.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~-~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSC-CC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCC-CC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 455555555555544 22 4566666666666655543 45566666666666655433 44555566666666666
Q ss_pred ccccccccccCCCcccccccccccCCCccccccc--ccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccC
Q 048083 443 IHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTF--DFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWR 520 (692)
Q Consensus 443 ~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 520 (692)
|.+..+|..+..+++|+.| +++++.....+. .+..++ +|+.|++++|..
T Consensus 88 n~i~~l~~~~~~l~~L~~L---~l~~n~l~~~~~~~~~~~l~--------------------------~L~~L~l~~n~l 138 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHL---DFQHSNLKQMSEFSVFLSLR--------------------------NLIYLDISHTHT 138 (306)
T ss_dssp CSEEEEEEEEETCTTCCEE---ECTTSEEESSTTTTTTTTCT--------------------------TCCEEECTTSCC
T ss_pred CccccChhhcCCCCCCCEE---ECCCCcccccccchhhhhcc--------------------------CCCEEECCCCcC
Confidence 6555554444444444433 344432111110 222222 455555555544
Q ss_pred CccccCCCCCCCCccEEEEcccc-c--cccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccC
Q 048083 521 DDYSDIPFKAQANLQELYLRGAL-R--MFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYE 592 (692)
Q Consensus 521 ~~~~~~~l~~~~~L~~L~L~~~~-~--~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 592 (692)
.......+..+++|+.|+++++. . .+|..+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 139 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CccchhhcccCcCCCEEECCCCccccccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 44444555666666666666655 2 355556666 66777777776666554555666666666666666554
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=5.9e-20 Score=207.04 Aligned_cols=370 Identities=17% Similarity=0.120 Sum_probs=234.0
Q ss_pred ccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 301 SLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 301 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
....+.+.+. .. ....++...|.++++|++|.+.++.+ ....+..| .++++|++|+|++|.++.+++
T Consensus 75 l~~L~~L~Ls-~N--~i~~i~~~~f~~L~~L~~L~Ls~N~l--------~~l~~~~f--~~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 75 FPELQVLDLS-RC--EIQTIEDGAYQSLSHLSTLILTGNPI--------QSLALGAF--SGLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp CTTCCEEECT-TC--CCCEECTTTTTTCTTCCEEECTTCCC--------CEECGGGG--TTCTTCCEEECTTSCCCCSTT
T ss_pred CCCCCEEECC-CC--cCCCcChhHhcCCCCCCEEEccCCcC--------CCCCHHHh--cCCCCCCEEECCCCcCCCCCh
Confidence 4567778777 33 33446666778999999999999873 22456789 999999999999999999988
Q ss_pred hhhccccccceeeccCCCccc--cCccccCCCCCeEEecCCccceecC-hhhhccccCc----eeecccccccccccccC
Q 048083 381 HVIGKLLHLSYLGLRSTFIDS--LPNSVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQ----HLYLNWIHSAISWLNFS 453 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~----~L~l~~~~~~~~~~~i~ 453 (692)
..|+++++|++|++++|.+.. +|..++.+++|++|++++|.++.++ ..+..+.+++ .++++.+.+..++.+..
T Consensus 142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~ 221 (635)
T 4g8a_A 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 221 (635)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc
Confidence 769999999999999998865 4677899999999999999988664 4565554443 23333332221111000
Q ss_pred -------------------------CC-----------------------------------------------------
Q 048083 454 -------------------------SL----------------------------------------------------- 455 (692)
Q Consensus 454 -------------------------~l----------------------------------------------------- 455 (692)
.+
T Consensus 222 ~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 301 (635)
T 4g8a_A 222 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL 301 (635)
T ss_dssp TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT
T ss_pred cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh
Confidence 00
Q ss_pred ----ccccc-------------------ccccccCCCcc--------------------ccccccccccccccccccccc
Q 048083 456 ----NNLQT-------------------LWGLSMGDDSL--------------------FNQTFDFTKLASLRKLGVKCY 492 (692)
Q Consensus 456 ----~~L~~-------------------L~~~~~~~~~~--------------------~~~~~~l~~l~~L~~L~l~~~ 492 (692)
.+++. |+.+++..+.. ...+.....+++|+.|+++.+
T Consensus 302 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n 381 (635)
T 4g8a_A 302 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 381 (635)
T ss_dssp TGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSS
T ss_pred hhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcc
Confidence 00000 00011111100 000111234556666666654
Q ss_pred c----hhhHHHHHHHhhccCCcceEEeeeccCCc-----------------------c-ccCCCCCCCCccEEEEcccc-
Q 048083 493 S----QRVIDSIAELVSRSTRLQSLKLVYAWRDD-----------------------Y-SDIPFKAQANLQELYLRGAL- 543 (692)
Q Consensus 493 ~----~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-----------------------~-~~~~l~~~~~L~~L~L~~~~- 543 (692)
. ......+.... +|+.|++..+.... . ....+..+++++.++++.+.
T Consensus 382 ~l~~~~~~~~~~~~~~----~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 382 GLSFKGCCSQSDFGTI----SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp CCBEEEECCHHHHSCS----CCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred ccccccccccchhhhh----hhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 1 11222232333 66666666552211 1 22345556677777777665
Q ss_pred -ccccccccCccCccceeeeeccCCCC-CchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEE
Q 048083 544 -RMFSAKTSSFPRNLKIVTLSMSRLYW-DPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWT 621 (692)
Q Consensus 544 -~~~p~~~~~l~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 621 (692)
...|..+..+ ++|+.|++++|.... ..+..+..+++|+.|++++|.+.+ ..+..+.++++|++|+|+++ .++.++
T Consensus 458 ~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l~~L~~L~Ls~N-~l~~l~ 534 (635)
T 4g8a_A 458 RVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHN-NFFSLD 534 (635)
T ss_dssp EECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTS-CCCBCC
T ss_pred ccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHHcCCCCCCEEECCCC-cCCCCC
Confidence 3334444555 889999999886433 344567889999999999988754 22334678899999999985 577665
Q ss_pred e-cCCCccccceeecccccccC-CCcChhhhhccCcEEEEec------CchHHH-HHHhhhc-CCceeccccccCCCCC
Q 048083 622 V-QEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTN------MPSTFG-EEAQRIL-QGTDVYIQKNQWPPFL 690 (692)
Q Consensus 622 ~-~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~------c~~~~~-~~~~~~~-~~~~~~~~~~~~p~~~ 690 (692)
. ....+++|+.|++++|.-.. .|..+.+++++|+.|++++ |+-.|. +.++... ...++..+.+..|.-+
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~ 613 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 613 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTT
T ss_pred hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHH
Confidence 3 45678999999999966444 7778888854499999975 443333 3333311 1245566778888754
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=2.4e-22 Score=217.29 Aligned_cols=327 Identities=15% Similarity=0.129 Sum_probs=165.2
Q ss_pred ccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCC-Chhhhcccc----ccceeeccCCCc
Q 048083 325 LDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKL-SDHVIGKLL----HLSYLGLRSTFI 399 (692)
Q Consensus 325 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~l~----~L~~L~l~~~~i 399 (692)
+..+++|++|.+.++.+... ....++..+ ..+++|++|++++|.+... +......+. +|++|++++|.+
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~----~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 97 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEA----RCKDISSAL--RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHH----HHHHHHHHH--HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred HhhcCCccEEEccCCCCCHH----HHHHHHHHH--HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC
Confidence 34567777777776652111 112345556 6677777777777766532 222122344 577777777766
Q ss_pred c-----ccCccccCCCCCeEEecCCccceec-Chhhhc-----cccCceeecccccccc-----cccccCCCcccccccc
Q 048083 400 D-----SLPNSVGNLRYLETLDVKHTKLRYL-PDSIWK-----AKKLQHLYLNWIHSAI-----SWLNFSSLNNLQTLWG 463 (692)
Q Consensus 400 ~-----~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~-----l~~L~~L~l~~~~~~~-----~~~~i~~l~~L~~L~~ 463 (692)
. .+|..+.++++|++|++++|.++.. +..+.. .++|++|++++|.+.. ++..+..+++|+.|
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L-- 175 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL-- 175 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEE--
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEE--
Confidence 5 3456666777777777777765522 222221 3457777777776552 22333334444444
Q ss_pred cccCCCccccc-ccccc-----ccccccccccccc--chhhHHHHHHHhhccCCcceEEeeeccCCccc-----cCCCCC
Q 048083 464 LSMGDDSLFNQ-TFDFT-----KLASLRKLGVKCY--SQRVIDSIAELVSRSTRLQSLKLVYAWRDDYS-----DIPFKA 530 (692)
Q Consensus 464 ~~~~~~~~~~~-~~~l~-----~l~~L~~L~l~~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~l~~ 530 (692)
+++++..... +..+. ..++|+.|+++++ .......+......+++|++|++++|.+.... ......
T Consensus 176 -~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 254 (461)
T 1z7x_W 176 -TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254 (461)
T ss_dssp -ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred -ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcC
Confidence 5555431110 00111 2346666666665 11111122222223336777777766544321 112234
Q ss_pred CCCccEEEEcccc-cc-----ccccccCccCccceeeeeccCCCCCchhhhhc-----CCCCCeeeecCCccCccE---E
Q 048083 531 QANLQELYLRGAL-RM-----FSAKTSSFPRNLKIVTLSMSRLYWDPMEALEK-----LCHLNILRIIGEAYEGKK---M 596 (692)
Q Consensus 531 ~~~L~~L~L~~~~-~~-----~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~---~ 596 (692)
+++|++|++++|. .. ++..+..+ ++|++|++++|.+.......+.. .++|+.|++++|.+.+.. +
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 5667777776654 22 44444445 66666666666655433333332 246666666666654321 1
Q ss_pred EEecCCCCcccEEEeccCCCCcEEEe-cC-----CCccccceeeccccccc-----CCCcChhhhhccCcEEEEecCc
Q 048083 597 TCQAGGFPQLRVLKLWNLSSLEEWTV-QE-----AAMPRLRELEIRSCNKL-----KPPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 597 ~~~~~~~~~L~~L~l~~~~~l~~l~~-~~-----~~~~~L~~L~l~~c~~l-----~~p~~~~~l~~sL~~L~i~~c~ 663 (692)
+.....+++|+.|+++++ .+..... .. ...++|++|++++|.-- .+|..+..+++ |++|++++|+
T Consensus 334 ~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~l~~N~ 409 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS-LRELDLSNNC 409 (461)
T ss_dssp HHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC-CCEEECCSSS
T ss_pred HHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC-ccEEECCCCC
Confidence 112233466666666654 2332110 00 01346666666665432 14445555566 6666666664
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=2.7e-20 Score=189.32 Aligned_cols=220 Identities=21% Similarity=0.155 Sum_probs=97.8
Q ss_pred eEEEEeecCCCCCCCChhhhccccccceeeccCCCcccc---CccccCCCCCeEEecCCccceecChhhhccccCceeec
Q 048083 364 LLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSL---PNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYL 440 (692)
Q Consensus 364 ~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l 440 (692)
+|++|++++|.++.+|..++.++++|++|++++|.+..+ |..+..+++|++|++++|.++.+|..+..+++|++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 444444544444444444344444555555544444332 23333444455555555544444444444445555555
Q ss_pred cccccccccc--ccCCCcccccccccccCCCcccc-cccccccccccccccccccchhhHHHHHHHhhccCCcceEEeee
Q 048083 441 NWIHSAISWL--NFSSLNNLQTLWGLSMGDDSLFN-QTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVY 517 (692)
Q Consensus 441 ~~~~~~~~~~--~i~~l~~L~~L~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 517 (692)
++|.+...+. .+..+++|+.| +++.+.... .+..+..++ +|++|++++
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L---~l~~n~l~~~~~~~~~~l~--------------------------~L~~L~l~~ 159 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYL---DISHTHTRVAFNGIFNGLS--------------------------SLEVLKMAG 159 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEE---ECTTSCCEECSTTTTTTCT--------------------------TCCEEECTT
T ss_pred CCCcccccccchhhhhccCCCEE---ECCCCcCCccchhhcccCc--------------------------CCCEEECCC
Confidence 4444443322 23333333332 333332111 111233333 333333333
Q ss_pred ccCCc-cccCCCCCCCCccEEEEcccc-cc-ccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCcc
Q 048083 518 AWRDD-YSDIPFKAQANLQELYLRGAL-RM-FSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGK 594 (692)
Q Consensus 518 ~~~~~-~~~~~l~~~~~L~~L~L~~~~-~~-~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 594 (692)
|.... ..+..+..+++|+.|+++++. .. .|..+..+ ++|++|+|++|.+.......+..+++|+.|++++|.+.+.
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC-CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 33322 223344455555555555544 22 24444455 5566666666655554444455566666666665555432
Q ss_pred EEEEecCCCC-cccEEEeccC
Q 048083 595 KMTCQAGGFP-QLRVLKLWNL 614 (692)
Q Consensus 595 ~~~~~~~~~~-~L~~L~l~~~ 614 (692)
. +.....++ +|+.|+++++
T Consensus 239 ~-~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 239 K-KQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp S-SSSCCCCCTTCCEEECTTC
T ss_pred C-HHHHHhhhccCCEEEccCC
Confidence 1 11223342 5666666553
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=9.1e-21 Score=193.64 Aligned_cols=258 Identities=12% Similarity=0.051 Sum_probs=202.8
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceecChhhhccccCceeecc
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLN 441 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 441 (692)
..++.++++.+.+...+...+..+++|++|++++|.+..++ ..+.++++|++|++++|.++.++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 45777888888877666665677889999999999998886 578999999999999999987665 8899999999999
Q ss_pred cccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCC
Q 048083 442 WIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRD 521 (692)
Q Consensus 442 ~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 521 (692)
+|.+..++. .++|+.| +++.+.....+.. .+++|+.|++++|.+.
T Consensus 89 ~n~l~~l~~----~~~L~~L---~l~~n~l~~~~~~----------------------------~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 89 NNYVQELLV----GPSIETL---HAANNNISRVSCS----------------------------RGQGKKNIYLANNKIT 133 (317)
T ss_dssp SSEEEEEEE----CTTCCEE---ECCSSCCSEEEEC----------------------------CCSSCEEEECCSSCCC
T ss_pred CCccccccC----CCCcCEE---ECCCCccCCcCcc----------------------------ccCCCCEEECCCCCCC
Confidence 998775542 2444444 6666532221100 1238999999999888
Q ss_pred ccccCCCCCCCCccEEEEcccc-cc-ccccc-cCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEE
Q 048083 522 DYSDIPFKAQANLQELYLRGAL-RM-FSAKT-SSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTC 598 (692)
Q Consensus 522 ~~~~~~l~~~~~L~~L~L~~~~-~~-~p~~~-~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 598 (692)
......+..+++|+.|+++++. .. .+..+ ..+ ++|++|+|++|.++.. +....+++|+.|++++|.+.. ++.
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--l~~ 208 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGP 208 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECG
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhcc-CcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc--chh
Confidence 8777788889999999999987 33 34444 356 8999999999998764 344569999999999998863 444
Q ss_pred ecCCCCcccEEEeccCCCCcEEEecCCCccccceeeccccccc-C-CCcChhhhhccCcEEEEecCc
Q 048083 599 QAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKL-K-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 599 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l-~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
....+++|+.|+++++ .++.+|.....+++|+.|++++|+.. . +|..+..+++ |+.+++.+|+
T Consensus 209 ~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~-L~~l~l~~~~ 273 (317)
T 3o53_A 209 EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR-VQTVAKQTVK 273 (317)
T ss_dssp GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH-HHHHHHHHHH
T ss_pred hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc-ceEEECCCch
Confidence 4677899999999985 68888887888999999999998876 3 8888888888 9988887654
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=5e-20 Score=197.19 Aligned_cols=218 Identities=14% Similarity=0.071 Sum_probs=117.8
Q ss_pred EEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccccc
Q 048083 366 TVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHS 445 (692)
Q Consensus 366 ~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 445 (692)
+.|++++|.++.+|.. .++|++|++++|.+..+|.. +.+|++|++++|.++.+|.. .++|++|++++|.+
T Consensus 74 ~~L~l~~~~l~~lp~~----~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 74 HELELNNLGLSSLPEL----PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL 143 (454)
T ss_dssp SEEECTTSCCSCCCSC----CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC
T ss_pred CEEEecCCccccCCCC----cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCC
Confidence 6666666666655542 25666666666666666643 35666666666666655432 14666667666666
Q ss_pred cccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCcccc
Q 048083 446 AISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSD 525 (692)
Q Consensus 446 ~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 525 (692)
..+| .++.+++|+.| +++++....+|.. ..+|+.|+++++.-.....+.. +++|+.|++++|.......
T Consensus 144 ~~lp-~~~~l~~L~~L---~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~~~~~----l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 144 EKLP-ELQNSSFLKII---DVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQN----LPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp SSCC-CCTTCTTCCEE---ECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTT----CTTCCEEECCSSCCSSCCC
T ss_pred CCCc-ccCCCCCCCEE---ECCCCcCcccCCC---cccccEEECcCCcCCcCccccC----CCCCCEEECCCCcCCcCCC
Confidence 6555 34444444444 5555543333322 2356666666551111112222 3366666666665543211
Q ss_pred CCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCC
Q 048083 526 IPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFP 604 (692)
Q Consensus 526 ~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 604 (692)
..++|+.|+++++. ..+| .+..+ ++|++|++++|.+...+. .+++|+.|++++|.+.+ ++ ..++
T Consensus 213 ----~~~~L~~L~l~~n~l~~lp-~~~~l-~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~--l~---~~~~ 277 (454)
T 1jl5_A 213 ----LPLSLESIVAGNNILEELP-ELQNL-PFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD--LP---ELPQ 277 (454)
T ss_dssp ----CCTTCCEEECCSSCCSSCC-CCTTC-TTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC--CC---CCCT
T ss_pred ----CcCcccEEECcCCcCCccc-ccCCC-CCCCEEECCCCcCCcccc----cccccCEEECCCCcccc--cC---cccC
Confidence 12366666666665 5555 35555 667777777766654221 23566777776666543 11 1246
Q ss_pred cccEEEeccCCCCcEE
Q 048083 605 QLRVLKLWNLSSLEEW 620 (692)
Q Consensus 605 ~L~~L~l~~~~~l~~l 620 (692)
+|+.|+++++. ++.+
T Consensus 278 ~L~~L~ls~N~-l~~l 292 (454)
T 1jl5_A 278 SLTFLDVSENI-FSGL 292 (454)
T ss_dssp TCCEEECCSSC-CSEE
T ss_pred cCCEEECcCCc-cCcc
Confidence 67777776642 4443
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=4.9e-19 Score=195.29 Aligned_cols=267 Identities=19% Similarity=0.109 Sum_probs=165.9
Q ss_pred ceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhh
Q 048083 303 FVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHV 382 (692)
Q Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~ 382 (692)
..+.+.+. +. ....+|..+ .++|+.|.+.++.+.. +- ..+++|++|+|++|.++.+|.
T Consensus 41 ~l~~L~ls-~n--~L~~lp~~l---~~~L~~L~L~~N~l~~------------lp--~~l~~L~~L~Ls~N~l~~lp~-- 98 (622)
T 3g06_A 41 GNAVLNVG-ES--GLTTLPDCL---PAHITTLVIPDNNLTS------------LP--ALPPELRTLEVSGNQLTSLPV-- 98 (622)
T ss_dssp CCCEEECC-SS--CCSCCCSCC---CTTCSEEEECSCCCSC------------CC--CCCTTCCEEEECSCCCSCCCC--
T ss_pred CCcEEEec-CC--CcCccChhh---CCCCcEEEecCCCCCC------------CC--CcCCCCCEEEcCCCcCCcCCC--
Confidence 35566665 23 223445544 2677777777766211 11 245677777777777776665
Q ss_pred hccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCccccccc
Q 048083 383 IGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLW 462 (692)
Q Consensus 383 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~ 462 (692)
.+++|++|++++|.+..+|. .+.+|++|++++|+++.+|.. +++|++|++++|.+..+|..+ .+|+.|
T Consensus 99 --~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~---~~L~~L- 166 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKL- 166 (622)
T ss_dssp --CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCC---TTCCEE-
T ss_pred --CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCcc---CCCCEE-
Confidence 45777777777777777766 466777777777777777653 367777777777766555432 223333
Q ss_pred ccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEccc
Q 048083 463 GLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGA 542 (692)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~ 542 (692)
++.++....+| . .+++|+.|++++|.+..... .+++|+.|++++|
T Consensus 167 --~L~~N~l~~l~---~--------------------------~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N 211 (622)
T 3g06_A 167 --WAYNNQLTSLP---M--------------------------LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNN 211 (622)
T ss_dssp --ECCSSCCSCCC---C--------------------------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred --ECCCCCCCCCc---c--------------------------cCCCCcEEECCCCCCCCCCC----ccchhhEEECcCC
Confidence 44444222221 1 12367777777776554321 2367888888776
Q ss_pred c-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEE
Q 048083 543 L-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWT 621 (692)
Q Consensus 543 ~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 621 (692)
. ..+|. .+++|+.|+|++|.++..+ ..+++|+.|++++|.+.. ++. .+++|+.|++++| .++.+|
T Consensus 212 ~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N-~L~~lp 277 (622)
T 3g06_A 212 RLTSLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRN-QLTRLP 277 (622)
T ss_dssp CCSSCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSS-CCCSCC
T ss_pred cccccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCC-CCCcCC
Confidence 6 55553 2277888888888777533 456788888888777653 221 5678888888875 466777
Q ss_pred ecCCCccccceeecccccccC-CCcChhhhhc
Q 048083 622 VQEAAMPRLRELEIRSCNKLK-PPEGLRNLAA 652 (692)
Q Consensus 622 ~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~ 652 (692)
.....+++|+.|++++|+... .|..+..+++
T Consensus 278 ~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp GGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred HHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 666777888888888866444 6655555444
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=186.57 Aligned_cols=230 Identities=19% Similarity=0.235 Sum_probs=161.8
Q ss_pred cccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCC
Q 048083 318 KLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRST 397 (692)
Q Consensus 318 ~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~ 397 (692)
..+|..+ .++++.|.+.++.+ ....+..| .++++|++|+|++|.+..+++..|.++++|++|+|++|
T Consensus 56 ~~iP~~~---~~~l~~L~L~~n~i--------~~~~~~~~--~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 56 REVPDGI---STNTRLLNLHENQI--------QIIKVNSF--KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SSCCSCC---CTTCSEEECCSCCC--------CEECTTTT--SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CcCCCCC---CCCCcEEEccCCcC--------CeeCHHHh--hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3455544 36778888887762 22345667 88888888888888888777655888888888888888
Q ss_pred CccccCc-cccCCCCCeEEecCCccceecCh-hhhccccCceeeccccccc-cccc-ccCCCcccccccccccCCCcccc
Q 048083 398 FIDSLPN-SVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHSA-ISWL-NFSSLNNLQTLWGLSMGDDSLFN 473 (692)
Q Consensus 398 ~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~-~~~~-~i~~l~~L~~L~~~~~~~~~~~~ 473 (692)
.+..+|. .+..+++|++|++++|.++.+|. .+.++++|++|++++|... .++. .+..+++|+.| +++++....
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L---~L~~n~l~~ 199 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL---NLAMCNLRE 199 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE---ECTTSCCSS
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee---cCCCCcCcc
Confidence 8888875 57788888888888888887764 6778888888888875433 3332 34444444444 555553222
Q ss_pred cccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc--cccccccc
Q 048083 474 QTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTS 551 (692)
Q Consensus 474 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~ 551 (692)
+| .+. .+++|+.|++++|.+....+..+..+++|+.|+++++. ...+..+.
T Consensus 200 ~~-~~~--------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 200 IP-NLT--------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp CC-CCT--------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred cc-ccC--------------------------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc
Confidence 11 122 22377788888887777777778888888888888876 33355566
Q ss_pred CccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCcc
Q 048083 552 SFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAY 591 (692)
Q Consensus 552 ~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 591 (692)
.+ ++|+.|+|++|+++......+..+++|+.|++++|.+
T Consensus 253 ~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 253 NL-QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TC-TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CC-CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 77 8888888888888877777778888888888887764
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.8e-19 Score=193.73 Aligned_cols=223 Identities=18% Similarity=0.208 Sum_probs=149.7
Q ss_pred CcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc-c
Q 048083 328 SCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS-V 406 (692)
Q Consensus 328 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~-~ 406 (692)
.++++.|.+.++.+ ..+.+..| .++++|++|+|++|.+..+++..|.++++|++|+|++|.+..+|.. +
T Consensus 74 ~~~l~~L~L~~n~i--------~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 143 (452)
T 3zyi_A 74 PSNTRYLNLMENNI--------QMIQADTF--RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143 (452)
T ss_dssp CTTCSEEECCSSCC--------CEECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS
T ss_pred CCCccEEECcCCcC--------ceECHHHc--CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh
Confidence 36777777777662 22345667 7778888888888877766655477778888888888777777654 6
Q ss_pred cCCCCCeEEecCCccceecCh-hhhccccCceeeccccccc-cccc-ccCCCcccccccccccCCCcccccccccccccc
Q 048083 407 GNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHSA-ISWL-NFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLAS 483 (692)
Q Consensus 407 ~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~-~~~~-~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~ 483 (692)
.++++|++|+|++|.++.+|. .+.++++|++|++++|... .++. .+..+++|+.| +++.+....+| .+.
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L---~L~~n~l~~~~-~~~---- 215 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL---NLGMCNIKDMP-NLT---- 215 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE---ECTTSCCSSCC-CCT----
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE---ECCCCcccccc-ccc----
Confidence 777788888888887776654 5677778888877774332 3332 23334443333 45544221111 111
Q ss_pred cccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceee
Q 048083 484 LRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVT 561 (692)
Q Consensus 484 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~ 561 (692)
.+++|+.|++++|.+....+..+..+++|+.|+++++. ...|..+..+ ++|+.|+
T Consensus 216 ----------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~ 272 (452)
T 3zyi_A 216 ----------------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL-ASLVELN 272 (452)
T ss_dssp ----------------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEE
T ss_pred ----------------------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC-CCCCEEE
Confidence 12377777777777777767777888888888888776 3335566667 7888888
Q ss_pred eeccCCCCCchhhhhcCCCCCeeeecCCcc
Q 048083 562 LSMSRLYWDPMEALEKLCHLNILRIIGEAY 591 (692)
Q Consensus 562 L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 591 (692)
|++|+++......+..+++|+.|++++|.+
T Consensus 273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 888888777666677888888888887754
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=5.2e-20 Score=205.61 Aligned_cols=295 Identities=14% Similarity=0.064 Sum_probs=144.1
Q ss_pred CCcceEEEEeecCCCCCCCC----hhhhccccccceeeccCCCcc-----ccCccccCCCCCeEEecCCccceecChhhh
Q 048083 360 RGLVLLTVLDLEGVYKPKLS----DHVIGKLLHLSYLGLRSTFID-----SLPNSVGNLRYLETLDVKHTKLRYLPDSIW 430 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~----~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~ 430 (692)
..+++|++|+|++|.+.... ...+..+++|++|++++|.+. .++..+.++++|++|++++|.+..+|..+.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 45666666666666544221 111445566666666665553 233334556666666666666555665566
Q ss_pred ccccCceeecccc---------------------------cccccccccCCCcccccccccccCCCcc--cccccccccc
Q 048083 431 KAKKLQHLYLNWI---------------------------HSAISWLNFSSLNNLQTLWGLSMGDDSL--FNQTFDFTKL 481 (692)
Q Consensus 431 ~l~~L~~L~l~~~---------------------------~~~~~~~~i~~l~~L~~L~~~~~~~~~~--~~~~~~l~~l 481 (692)
++++|++|+++.+ ....+|..+..+++|+.| +++.+.. ...+..+..+
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L---~Ls~~~l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL---DLLYALLETEDHCTLIQKC 317 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE---EETTCCCCHHHHHHHHTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE---ecCCCcCCHHHHHHHHHhC
Confidence 6666666666532 222222222233333333 3333320 0000113445
Q ss_pred cccccccccccchhhHHHHHHHhhccCCcceEEeee----------c-cCCccccCC-CCCCCCccEEEEcccc--cccc
Q 048083 482 ASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVY----------A-WRDDYSDIP-FKAQANLQELYLRGAL--RMFS 547 (692)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~-~~~~~~~~~-l~~~~~L~~L~L~~~~--~~~p 547 (692)
++|+.|++..+ .....+..+...|++|++|++++ | ..+...... ...+++|++|++..+. ...+
T Consensus 318 ~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 318 PNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp TTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred cCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 55555555422 11222333333344566666662 2 222111111 2335666666664322 1112
Q ss_pred ccccC-ccCccceeeee----ccCCCCC-----chhhhhcCCCCCeeeecCCc--cCccEEEEecCCCCcccEEEeccCC
Q 048083 548 AKTSS-FPRNLKIVTLS----MSRLYWD-----PMEALEKLCHLNILRIIGEA--YEGKKMTCQAGGFPQLRVLKLWNLS 615 (692)
Q Consensus 548 ~~~~~-l~~~L~~L~L~----~~~l~~~-----~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~ 615 (692)
..+.. + ++|+.|+++ .+.++.. ....+.++++|+.|++++|. +.+..+......+++|+.|++++|.
T Consensus 396 ~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 396 ESIGTYL-KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHHC-CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHhhC-CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 22222 3 566666665 2234432 11224456666666665322 2222111111236777777777654
Q ss_pred CCcE--EEecCCCccccceeecccccccC---CCcChhhhhccCcEEEEecCc
Q 048083 616 SLEE--WTVQEAAMPRLRELEIRSCNKLK---PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 616 ~l~~--l~~~~~~~~~L~~L~l~~c~~l~---~p~~~~~l~~sL~~L~i~~c~ 663 (692)
++. ++.....+++|++|+|++|+ ++ ++.....+++ |+.|++++|.
T Consensus 475 -l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~-L~~L~ls~n~ 524 (592)
T 3ogk_B 475 -ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPS-LRYLWVQGYR 524 (592)
T ss_dssp -SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSS-CCEEEEESCB
T ss_pred -CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCc-cCeeECcCCc
Confidence 332 22223457889999999988 55 5555567888 9999999886
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=6.8e-19 Score=189.26 Aligned_cols=221 Identities=19% Similarity=0.152 Sum_probs=155.4
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceecCh-hhhccccCceeec
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYL 440 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l 440 (692)
++|++|+|++|.++.+++..|.++++|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|. .+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56778888888877665554778888888888888777765 457778888888888888777764 3677888888888
Q ss_pred cccccccccc-ccCCCcccccccccccCCCcccc-cccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeec
Q 048083 441 NWIHSAISWL-NFSSLNNLQTLWGLSMGDDSLFN-QTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYA 518 (692)
Q Consensus 441 ~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 518 (692)
++|.+..+|. .+..+++|+.| +++.+.... ++. ..+..+ ++|+.|++++|
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L---~l~~~~~l~~i~~---------------------~~~~~l----~~L~~L~L~~n 206 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRL---DLGELKKLEYISE---------------------GAFEGL----FNLKYLNLGMC 206 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEE---ECCCCTTCCEECT---------------------TTTTTC----TTCCEEECTTS
T ss_pred CCCCcceeCHhHHhcCCcccEE---eCCCCCCccccCh---------------------hhccCC----CCCCEEECCCC
Confidence 8877765553 34455555544 333321111 110 011222 37777777777
Q ss_pred cCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEE
Q 048083 519 WRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKM 596 (692)
Q Consensus 519 ~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 596 (692)
.+... ..+..+++|+.|+++++. ...|..+..+ ++|+.|+|++|.+.......+..+++|+.|++++|.+....
T Consensus 207 ~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~- 282 (452)
T 3zyi_A 207 NIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP- 282 (452)
T ss_dssp CCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-
T ss_pred ccccc--ccccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC-
Confidence 66654 357788899999999887 4446778888 89999999999998877778889999999999988876321
Q ss_pred EEecCCCCcccEEEeccCC
Q 048083 597 TCQAGGFPQLRVLKLWNLS 615 (692)
Q Consensus 597 ~~~~~~~~~L~~L~l~~~~ 615 (692)
+.....+++|+.|+|.+++
T Consensus 283 ~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSSTTCTTCCEEECCSSC
T ss_pred hHHhccccCCCEEEccCCC
Confidence 2234568899999998754
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=4.7e-21 Score=207.15 Aligned_cols=319 Identities=16% Similarity=0.086 Sum_probs=221.0
Q ss_pred CcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCC-----CCChhhhccccccceeeccCCCcccc
Q 048083 328 SCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKP-----KLSDHVIGKLLHLSYLGLRSTFIDSL 402 (692)
Q Consensus 328 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~~l~~L~~L~l~~~~i~~l 402 (692)
.++++.|.+.++..... .....| ..+++|++|++++|.+. .++.. +..+++|++|++++|.+...
T Consensus 2 ~~~l~~L~Ls~~~l~~~-------~~~~~~--~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~ 71 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDA-------RWAELL--PLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDV 71 (461)
T ss_dssp CEEEEEEEEESCCCCHH-------HHHHHH--HHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHH
T ss_pred CccceehhhhhcccCch-------hHHHHH--hhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChH
Confidence 35788899987763221 245567 88999999999999987 34555 78889999999999988652
Q ss_pred -C-ccccCCC----CCeEEecCCccce-----ecChhhhccccCceeeccccccccc-ccccC-----CCcccccccccc
Q 048083 403 -P-NSVGNLR----YLETLDVKHTKLR-----YLPDSIWKAKKLQHLYLNWIHSAIS-WLNFS-----SLNNLQTLWGLS 465 (692)
Q Consensus 403 -p-~~~~~l~----~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~-~~~i~-----~l~~L~~L~~~~ 465 (692)
+ .....+. +|++|++++|.++ .+|..+.++++|++|++++|.+... +..+. ..++|+.| +
T Consensus 72 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L---~ 148 (461)
T 1z7x_W 72 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL---Q 148 (461)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE---E
T ss_pred HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEE---E
Confidence 2 2223455 7999999999887 4578899999999999999987522 22222 23345555 6
Q ss_pred cCCCccc-----ccccccccccccccccccccc--hhhHHHHHH-HhhccCCcceEEeeeccCCcc----ccCCCCCCCC
Q 048083 466 MGDDSLF-----NQTFDFTKLASLRKLGVKCYS--QRVIDSIAE-LVSRSTRLQSLKLVYAWRDDY----SDIPFKAQAN 533 (692)
Q Consensus 466 ~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~ 533 (692)
++.+... .++..+..+++|+.|+++++. ......+.. +....++|++|++++|..+.. ....+..+++
T Consensus 149 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 228 (461)
T 1z7x_W 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTT
T ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCC
Confidence 6666422 123356778999999999872 222233332 222345999999999977664 2445667899
Q ss_pred ccEEEEcccc-cc-----c-cccccCccCccceeeeeccCCCCCc----hhhhhcCCCCCeeeecCCccCccEEEE---e
Q 048083 534 LQELYLRGAL-RM-----F-SAKTSSFPRNLKIVTLSMSRLYWDP----MEALEKLCHLNILRIIGEAYEGKKMTC---Q 599 (692)
Q Consensus 534 L~~L~L~~~~-~~-----~-p~~~~~l~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~---~ 599 (692)
|++|+++++. .. + +..+..+ ++|++|++++|.++... ...+..+++|+.|++++|.+.+..... .
T Consensus 229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 229 LRELALGSNKLGDVGMAELCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred ccEEeccCCcCChHHHHHHHHHHhcCC-CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence 9999999976 21 1 2222345 89999999999988653 445667999999999999875432211 1
Q ss_pred -cCCCCcccEEEeccCCCCcE-----EEecCCCccccceeecccccccC--CCcChhh-----hhccCcEEEEecCc
Q 048083 600 -AGGFPQLRVLKLWNLSSLEE-----WTVQEAAMPRLRELEIRSCNKLK--PPEGLRN-----LAATLKDIVLTNMP 663 (692)
Q Consensus 600 -~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~--~p~~~~~-----l~~sL~~L~i~~c~ 663 (692)
....++|+.|++++|. ++. ++.....+++|++|++++|. +. .+..+.. .++ |++|++++|.
T Consensus 308 l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~-L~~L~L~~n~ 381 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSV-LRVLWLADCD 381 (461)
T ss_dssp HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCC-CCEEECTTSC
T ss_pred hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCc-eEEEECCCCC
Confidence 1234799999999975 432 22223346899999999974 54 3333332 456 9999999996
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.5e-19 Score=195.33 Aligned_cols=242 Identities=14% Similarity=0.100 Sum_probs=160.4
Q ss_pred HHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhcc
Q 048083 353 LDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKA 432 (692)
Q Consensus 353 ~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l 432 (692)
+.... ..+++|++|+|++|.+..+++..+..+++|++|+|++|.+..+++ ++.+++|++|+|++|.++.+|. .
T Consensus 26 l~~l~--~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~ 98 (487)
T 3oja_A 26 LASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----G 98 (487)
T ss_dssp HHTTS--TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----C
T ss_pred HHHhc--ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----C
Confidence 34444 567799999999999998876559999999999999999987776 9999999999999999998774 3
Q ss_pred ccCceeecccccccccccccCCCcccccccccccCCCccccc-ccccccccccccccccccchhhHHHHHHHhhccCCcc
Q 048083 433 KKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQ-TFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQ 511 (692)
Q Consensus 433 ~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 511 (692)
++|++|++++|.+..++.. .+++|+.| +++++..... |..++.++ +|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~--~l~~L~~L---~L~~N~l~~~~~~~~~~l~--------------------------~L~ 147 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS--RGQGKKNI---YLANNKITMLRDLDEGCRS--------------------------RVQ 147 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC--CCSSCEEE---ECCSSCCCSGGGBCGGGGS--------------------------SEE
T ss_pred CCcCEEECcCCcCCCCCcc--ccCCCCEE---ECCCCCCCCCCchhhcCCC--------------------------CCC
Confidence 8999999999988866543 34444444 6666643332 22344444 555
Q ss_pred eEEeeeccCCccccCCCC-CCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCC
Q 048083 512 SLKLVYAWRDDYSDIPFK-AQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGE 589 (692)
Q Consensus 512 ~L~l~~~~~~~~~~~~l~-~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~ 589 (692)
.|++++|.+....+..+. .+++|+.|+|++|. ..+|. ...+ ++|+.|+|++|.++..+ +.+..+++|+.|++++|
T Consensus 148 ~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l-~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVF-AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNN 224 (487)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCC-TTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTS
T ss_pred EEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccC-CCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCC
Confidence 555555555544444443 45666666666665 33332 2234 67777777777766533 33666777777777766
Q ss_pred ccCccEEEEecCCCCcccEEEeccCCCC-cEEEecCCCccccceeeccc
Q 048083 590 AYEGKKMTCQAGGFPQLRVLKLWNLSSL-EEWTVQEAAMPRLRELEIRS 637 (692)
Q Consensus 590 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~ 637 (692)
.+.+ ++.....+++|+.|++++++-. ..+|.....+++|+.+++..
T Consensus 225 ~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 225 KLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp CCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 6652 3434455667777777765422 13333344566666666653
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.3e-18 Score=173.14 Aligned_cols=201 Identities=22% Similarity=0.215 Sum_probs=114.9
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCcccc-CccccCCCCCeEEecCCcc-ceec-ChhhhccccCceee
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSL-PNSVGNLRYLETLDVKHTK-LRYL-PDSIWKAKKLQHLY 439 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~-l~~l-p~~~~~l~~L~~L~ 439 (692)
++|++|++++|.++.+++..+..+++|++|++++|.+..+ |..+.++++|++|++++|. ++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 4556666666666555544355566666666666655555 3445556666666666664 5544 44555566666666
Q ss_pred cccccccccc-cccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeec
Q 048083 440 LNWIHSAISW-LNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYA 518 (692)
Q Consensus 440 l~~~~~~~~~-~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 518 (692)
+++|.+...+ ..+..+++|+.| +++++.....+. ..+..+ ++|+.|++++|
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L---~l~~n~l~~~~~---------------------~~~~~l----~~L~~L~l~~n 163 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYL---YLQDNALQALPD---------------------DTFRDL----GNLTHLFLHGN 163 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEE---ECCSSCCCCCCT---------------------TTTTTC----TTCCEEECCSS
T ss_pred CCCCcCCEECHhHhhCCcCCCEE---ECCCCcccccCH---------------------hHhccC----CCccEEECCCC
Confidence 6665554332 223333333333 333332111111 111122 26666777766
Q ss_pred cCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccC
Q 048083 519 WRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYE 592 (692)
Q Consensus 519 ~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 592 (692)
.++......+..+++|+.|+++++. ...|.++..+ ++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccccCHHHhcCccccCEEECCCCcccccCHhHccCc-ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 6665555556677777777777765 3336666666 77777777777777766666777777777777776653
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=4.3e-18 Score=182.35 Aligned_cols=221 Identities=17% Similarity=0.179 Sum_probs=130.1
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceecCh-hhhccccCceeec
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYL 440 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l 440 (692)
+++++|+|++|.+..++...|.++++|++|+|++|.+..++ ..+.++++|++|+|++|+++.+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45666777777766555444666777777777777666655 346667777777777776666654 4666677777777
Q ss_pred cccccccccc-ccCCCcccccccccccCCCcccc-cccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeec
Q 048083 441 NWIHSAISWL-NFSSLNNLQTLWGLSMGDDSLFN-QTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYA 518 (692)
Q Consensus 441 ~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 518 (692)
++|.+..++. .+..+++|+.| +++.+.... ++. ..+..+ ++|+.|++++|
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L---~l~~~~~l~~i~~---------------------~~~~~l----~~L~~L~L~~n 195 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRL---DLGELKRLSYISE---------------------GAFEGL----SNLRYLNLAMC 195 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEE---ECCCCTTCCEECT---------------------TTTTTC----SSCCEEECTTS
T ss_pred CCCcccccCHHHhhhCcccCEe---CCCCCCCcceeCc---------------------chhhcc----cccCeecCCCC
Confidence 6666554443 33344444433 333321111 000 011112 26666666666
Q ss_pred cCCccccCCCCCCCCccEEEEcccc--ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEE
Q 048083 519 WRDDYSDIPFKAQANLQELYLRGAL--RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKM 596 (692)
Q Consensus 519 ~~~~~~~~~l~~~~~L~~L~L~~~~--~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 596 (692)
.++.. ..+..+++|+.|+|+++. ...|..+..+ ++|++|+|++|.+.......+.++++|+.|++++|.+....
T Consensus 196 ~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~- 271 (440)
T 3zyj_A 196 NLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP- 271 (440)
T ss_dssp CCSSC--CCCTTCSSCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC-
T ss_pred cCccc--cccCCCcccCEEECCCCccCccChhhhccC-ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC-
Confidence 55433 246667777777777765 3335566666 77777777777777666666777777777777777665311
Q ss_pred EEecCCCCcccEEEeccCC
Q 048083 597 TCQAGGFPQLRVLKLWNLS 615 (692)
Q Consensus 597 ~~~~~~~~~L~~L~l~~~~ 615 (692)
+..+..+++|+.|+|.+++
T Consensus 272 ~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTTSSCTTCCEEECCSSC
T ss_pred hhHhccccCCCEEEcCCCC
Confidence 1123456777777776643
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=2.1e-19 Score=183.00 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=117.4
Q ss_pred CcceEEeeeccCCccccCCCCCCCCccEEEEcccc-c-c--ccccc--cCccCccceeeeeccCCCCC---chhhhhcCC
Q 048083 509 RLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-R-M--FSAKT--SSFPRNLKIVTLSMSRLYWD---PMEALEKLC 579 (692)
Q Consensus 509 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~-~--~p~~~--~~l~~~L~~L~L~~~~l~~~---~~~~l~~l~ 579 (692)
+|++|++++|.+....+..+..+++|+.|+++++. . . +|..+ ..+ ++|++|++++|.+... ....+..++
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 89999999998888887889999999999999986 2 1 33344 677 9999999999998732 223346789
Q ss_pred CCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcChhhhhccCcEEE
Q 048083 580 HLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIV 658 (692)
Q Consensus 580 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~ 658 (692)
+|+.|++++|.+.+.........+++|+.|+++++ .++.+|.... ++|++|++++| .++ +|. +..+++ |+.|+
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~-L~~L~ 302 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQ-VGNLS 302 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCE-EEEEE
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh-HhhCCC-CCEEe
Confidence 99999999998876442223456799999999985 4777765544 89999999995 577 876 889999 99999
Q ss_pred EecCc
Q 048083 659 LTNMP 663 (692)
Q Consensus 659 i~~c~ 663 (692)
+++++
T Consensus 303 L~~N~ 307 (312)
T 1wwl_A 303 LKGNP 307 (312)
T ss_dssp CTTCT
T ss_pred ccCCC
Confidence 99876
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.2e-18 Score=177.44 Aligned_cols=220 Identities=17% Similarity=0.167 Sum_probs=158.9
Q ss_pred EEEEeecCCCCC--CCChhhhc-------cccccceeeccCCCcc-ccCccc--cCCCCCeEEecCCccceecChhhhcc
Q 048083 365 LTVLDLEGVYKP--KLSDHVIG-------KLLHLSYLGLRSTFID-SLPNSV--GNLRYLETLDVKHTKLRYLPDSIWKA 432 (692)
Q Consensus 365 L~~L~L~~~~~~--~l~~~~~~-------~l~~L~~L~l~~~~i~-~lp~~~--~~l~~L~~L~L~~~~l~~lp~~~~~l 432 (692)
|+.|++++|.+. .++.. +. .+++|++|++++|.+. .+|..+ +.+++|++|++++|.++.+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence 677788887774 45554 44 6888888888888886 567665 78888888888888888778777777
Q ss_pred -----ccCceeecccccccccc-cccCCCcccccccccccCCCccc---cccccc--ccccccccccccccchh-hHHHH
Q 048083 433 -----KKLQHLYLNWIHSAISW-LNFSSLNNLQTLWGLSMGDDSLF---NQTFDF--TKLASLRKLGVKCYSQR-VIDSI 500 (692)
Q Consensus 433 -----~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~~~~~~~~~~~---~~~~~l--~~l~~L~~L~l~~~~~~-~~~~l 500 (692)
++|++|++++|.+..++ ..++.+++|+.| +++++... ..|..+ +.+++|+.|+++++.-. .....
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L---~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 220 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL---DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE---ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEE---ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence 88888888888887665 566666666665 66666422 123344 78888999999887322 22222
Q ss_pred HHHhhccCCcceEEeeeccCCccc-cCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcC
Q 048083 501 AELVSRSTRLQSLKLVYAWRDDYS-DIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKL 578 (692)
Q Consensus 501 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l 578 (692)
..+...+++|+.|++++|.+.... ...+..+++|+.|+++++. ..+|.++. ++|++|+|++|+++.. +.+..+
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~--p~~~~l 295 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN--PSPDEL 295 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSC--CCTTTS
T ss_pred HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCC--hhHhhC
Confidence 233334459999999999877755 3456667889999999877 66776553 7899999999988775 337888
Q ss_pred CCCCeeeecCCccCc
Q 048083 579 CHLNILRIIGEAYEG 593 (692)
Q Consensus 579 ~~L~~L~l~~~~~~~ 593 (692)
++|+.|++++|.+.+
T Consensus 296 ~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 296 PQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEEEEECTTCTTTC
T ss_pred CCCCEEeccCCCCCC
Confidence 888888888887754
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=2.4e-19 Score=200.16 Aligned_cols=322 Identities=11% Similarity=-0.009 Sum_probs=214.2
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCc----ccc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFI----DSL 402 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i----~~l 402 (692)
.+++|++|.+.++..... ....++..+ ..+++|++|++++|.+..++.. +..+++|+.|++++... ...
T Consensus 190 ~~~~L~~L~L~~n~~~~~----~~~~l~~~~--~~~~~L~~L~L~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKI----SPKDLETIA--RNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HCCCCCEEECTTCCCSSC----CHHHHHHHH--HHCTTCCEEECSSCBGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTS
T ss_pred cCCCccEEEeeccCCCcc----CHHHHHHHH--hhCCCCcEEeccCccHHHHHHH-HhhhhHHHhhcccccccccchHHH
Confidence 466777777665552101 012345556 6777777777777777666655 77777777777764311 233
Q ss_pred CccccCCCCCeEEecCCccceecChhhhccccCceeecccccccc--cccccCCCcccccccccccCCCc-ccccccccc
Q 048083 403 PNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAI--SWLNFSSLNNLQTLWGLSMGDDS-LFNQTFDFT 479 (692)
Q Consensus 403 p~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~~i~~l~~L~~L~~~~~~~~~-~~~~~~~l~ 479 (692)
+..+..+++|+.|+++++....+|..+..+++|++|++++|.+.. .+..+..+++|+.|. +..+. ...++....
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~---L~~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE---TRNVIGDRGLEVLAQ 339 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE---EEGGGHHHHHHHHHH
T ss_pred HHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe---ccCccCHHHHHHHHH
Confidence 445677778888888777666778888899999999999998542 223356677777774 43221 112222346
Q ss_pred cccccccccccc----------cchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCC-CCCccEEEEccc----c-
Q 048083 480 KLASLRKLGVKC----------YSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKA-QANLQELYLRGA----L- 543 (692)
Q Consensus 480 ~l~~L~~L~l~~----------~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~L~~~----~- 543 (692)
.+++|++|++.. +.......+..+...|++|++|+++.+..+...+..+.. +++|+.|+++++ .
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 678999999994 433333344444455679999999888777665555554 889999999742 1
Q ss_pred cc------ccccccCccCccceeeeeccC--CCCCchhhhhc-CCCCCeeeecCCccCccEEEEecCCCCcccEEEeccC
Q 048083 544 RM------FSAKTSSFPRNLKIVTLSMSR--LYWDPMEALEK-LCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNL 614 (692)
Q Consensus 544 ~~------~p~~~~~l~~~L~~L~L~~~~--l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 614 (692)
+. ++..+..+ ++|+.|+++.|. ++...+..+.. +++|+.|++++|.+.+..++....++++|++|+|++|
T Consensus 420 ~~~p~~~~~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp SSCCCHHHHHHHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred cCchHHHHHHHHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 22 22234456 899999998764 56555555554 8999999999998876555545578999999999998
Q ss_pred CCCcE--EEecCCCccccceeecccccccC---CCcChhhhhccCcEEEEecC
Q 048083 615 SSLEE--WTVQEAAMPRLRELEIRSCNKLK---PPEGLRNLAATLKDIVLTNM 662 (692)
Q Consensus 615 ~~l~~--l~~~~~~~~~L~~L~l~~c~~l~---~p~~~~~l~~sL~~L~i~~c 662 (692)
+ ++. ++.....+++|++|++++|. ++ +..-...+|. |+...+...
T Consensus 499 ~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~-l~~~~~~~~ 548 (592)
T 3ogk_B 499 C-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPY-WNIELIPSR 548 (592)
T ss_dssp C-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTT-EEEEEECCC
T ss_pred C-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCC-cEEEEecCc
Confidence 7 543 22223458999999999998 55 2222345566 666666554
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1e-17 Score=181.13 Aligned_cols=232 Identities=14% Similarity=0.078 Sum_probs=162.8
Q ss_pred ccccceeeccCCCccccC-ccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCccccccccc
Q 048083 386 LLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGL 464 (692)
Q Consensus 386 l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~ 464 (692)
+++|++|+|++|.+..++ ..++++++|++|+|++|.++..+. +..+++|++|++++|.+..+|.. ++|+.|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L--- 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETL--- 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEE---
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEE---
Confidence 348999999999998876 578999999999999999886655 88999999999999987655432 334433
Q ss_pred ccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-
Q 048083 465 SMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL- 543 (692)
Q Consensus 465 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~- 543 (692)
+++++.....+.. .+++|+.|++++|.+....+..+..+++|+.|+++++.
T Consensus 105 ~L~~N~l~~~~~~----------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 105 HAANNNISRVSCS----------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp ECCSSCCCCEEEC----------------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred ECcCCcCCCCCcc----------------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence 5555532221100 01277888888887777666677777888888888776
Q ss_pred -cccccccc-CccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEE
Q 048083 544 -RMFSAKTS-SFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWT 621 (692)
Q Consensus 544 -~~~p~~~~-~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 621 (692)
...|..+. .+ ++|+.|+|++|.++.. +....+++|+.|++++|.+.+ ++..+..+++|+.|+++++ .+..+|
T Consensus 157 ~~~~~~~l~~~l-~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N-~l~~lp 230 (487)
T 3oja_A 157 DTVNFAELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNN-KLVLIE 230 (487)
T ss_dssp CEEEGGGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTS-CCCEEC
T ss_pred CCcChHHHhhhC-CcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCC-cCcccc
Confidence 33454554 45 7888888888877653 334567888888888777753 3334556778888888874 466777
Q ss_pred ecCCCccccceeecccccccC--CCcChhhhhccCcEEEEe
Q 048083 622 VQEAAMPRLRELEIRSCNKLK--PPEGLRNLAATLKDIVLT 660 (692)
Q Consensus 622 ~~~~~~~~L~~L~l~~c~~l~--~p~~~~~l~~sL~~L~i~ 660 (692)
.....+++|+.|++++|+... +|..+..++. |+.+.+.
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~-L~~l~~~ 270 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR-VQTVAKQ 270 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH-HHHHHHH
T ss_pred hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC-CcEEecc
Confidence 666677888888888876652 6666666666 6666553
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1.9e-18 Score=173.72 Aligned_cols=202 Identities=22% Similarity=0.205 Sum_probs=153.1
Q ss_pred CcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCC-cccc-Ccc
Q 048083 328 SCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTF-IDSL-PNS 405 (692)
Q Consensus 328 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~-i~~l-p~~ 405 (692)
.++++.|.+.++.+. .+.+..| ..+++|++|++++|.++.+++..+..+++|++|++++|. +..+ |..
T Consensus 31 ~~~l~~L~l~~n~i~--------~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS--------HVPAASF--RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp CTTCSEEECTTSCCC--------EECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred CCCceEEEeeCCcCC--------ccCHHHc--ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence 578999999988732 2345678 899999999999999997755449999999999999997 8888 567
Q ss_pred ccCCCCCeEEecCCccceec-ChhhhccccCceeecccccccccccc-cCCCcccccccccccCCCcccccccc-ccccc
Q 048083 406 VGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLNWIHSAISWLN-FSSLNNLQTLWGLSMGDDSLFNQTFD-FTKLA 482 (692)
Q Consensus 406 ~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~-i~~l~~L~~L~~~~~~~~~~~~~~~~-l~~l~ 482 (692)
+.++++|++|++++|.++.+ |..+.++++|++|++++|.+..++.. +..+++|+.| +++++....++.. +..++
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L---~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL---FLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE---ECCSSCCCEECTTTTTTCT
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE---ECCCCcccccCHHHhcCcc
Confidence 89999999999999999977 56789999999999999998876654 5666666655 6777643333221 33333
Q ss_pred ccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-cccc-ccccCccCcccee
Q 048083 483 SLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFS-AKTSSFPRNLKIV 560 (692)
Q Consensus 483 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p-~~~~~l~~~L~~L 560 (692)
+|+.|++++|.+....+..+..+++|+.|+++++. ..+| ..+..+ ++|+.|
T Consensus 178 --------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L 230 (285)
T 1ozn_A 178 --------------------------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL-RALQYL 230 (285)
T ss_dssp --------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC-TTCCEE
T ss_pred --------------------------ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC-cccCEE
Confidence 66667777776666666677777888888888776 4444 346666 788888
Q ss_pred eeeccCCCC
Q 048083 561 TLSMSRLYW 569 (692)
Q Consensus 561 ~L~~~~l~~ 569 (692)
++++|.+..
T Consensus 231 ~l~~N~~~c 239 (285)
T 1ozn_A 231 RLNDNPWVC 239 (285)
T ss_dssp ECCSSCEEC
T ss_pred eccCCCccC
Confidence 888887653
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=3.3e-19 Score=199.26 Aligned_cols=324 Identities=16% Similarity=0.119 Sum_probs=177.4
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhh----hccccccceeeccCCC--c-
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHV----IGKLLHLSYLGLRSTF--I- 399 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~----~~~l~~L~~L~l~~~~--i- 399 (692)
.+++|++|.+.++... ....++..+ ..+++|++|++++|.++...... ...+++|++|++++|. +
T Consensus 128 ~~~~L~~L~L~~~~~~------~~~~l~~~~--~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 199 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGF------STDGLAAIA--ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199 (594)
T ss_dssp HCTTCCEEEEESCEEE------EHHHHHHHH--HHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCC
T ss_pred hCCCCcEEeCCCcCCC------CHHHHHHHH--HhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCC
Confidence 4788888888876310 011245556 67888999999888865332211 3356788999988875 2
Q ss_pred -cccCccccCCCCCeEEecCCc-cceecChhhhccccCceeecccccc-------cccccccCCCcccccc---------
Q 048083 400 -DSLPNSVGNLRYLETLDVKHT-KLRYLPDSIWKAKKLQHLYLNWIHS-------AISWLNFSSLNNLQTL--------- 461 (692)
Q Consensus 400 -~~lp~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~-------~~~~~~i~~l~~L~~L--------- 461 (692)
..++..+.++++|++|++++| .++.+|..+..+++|++|++..+.. ..++..+..+++|+.|
T Consensus 200 ~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~ 279 (594)
T 2p1m_B 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG
T ss_pred HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh
Confidence 222333355788999999888 6667777788888888888655431 1122223333333322
Q ss_pred ------------cccccCCCcccc--cccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeec---------
Q 048083 462 ------------WGLSMGDDSLFN--QTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYA--------- 518 (692)
Q Consensus 462 ------------~~~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--------- 518 (692)
+.++++.+.... ++..+..+++|++|++.++ .....+..+...+++|++|++..+
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 222444332100 0111345566666666554 112233333333446666666432
Q ss_pred cCCccccCCC-CCCCCccEEEEcccc--cccccccc-CccCccceeeee--c----cCCCCCch-----hhhhcCCCCCe
Q 048083 519 WRDDYSDIPF-KAQANLQELYLRGAL--RMFSAKTS-SFPRNLKIVTLS--M----SRLYWDPM-----EALEKLCHLNI 583 (692)
Q Consensus 519 ~~~~~~~~~l-~~~~~L~~L~L~~~~--~~~p~~~~-~l~~~L~~L~L~--~----~~l~~~~~-----~~l~~l~~L~~ 583 (692)
..+......+ ..+++|+.|.+.++. ...+..+. .+ ++|+.|+++ + +.++.... ..+..+++|+.
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence 1111111111 235666666554433 11111222 34 677777777 2 23332111 12456777777
Q ss_pred eeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEE--ecCCCccccceeecccccccC--CCcChhhhhccCcEEEE
Q 048083 584 LRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWT--VQEAAMPRLRELEIRSCNKLK--PPEGLRNLAATLKDIVL 659 (692)
Q Consensus 584 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~c~~l~--~p~~~~~l~~sL~~L~i 659 (692)
|++++ .+.+..+......+++|+.|++++|. ++... .....+++|+.|++++|+.-. +......+++ |+.|++
T Consensus 437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~-L~~L~l 513 (594)
T 2p1m_B 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET-MRSLWM 513 (594)
T ss_dssp EECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG-SSEEEE
T ss_pred EeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC-CCEEee
Confidence 77754 33322221111136778888888765 32211 111347999999999998633 3345567888 999999
Q ss_pred ecCch
Q 048083 660 TNMPS 664 (692)
Q Consensus 660 ~~c~~ 664 (692)
++|+.
T Consensus 514 ~~~~~ 518 (594)
T 2p1m_B 514 SSCSV 518 (594)
T ss_dssp ESSCC
T ss_pred eCCCC
Confidence 99984
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=2.5e-17 Score=164.64 Aligned_cols=199 Identities=17% Similarity=0.120 Sum_probs=103.4
Q ss_pred eEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceecC-hhhhccccCceeecc
Q 048083 364 LLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQHLYLN 441 (692)
Q Consensus 364 ~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~ 441 (692)
+|++|++++|.++.++...+.++++|++|++++|.+..++. .+.++++|++|++++|.++.++ ..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45556666666555554335556666666666665555543 4555666666666666555443 445556666666666
Q ss_pred ccccccccc-ccCCCcccccccccccCCCccc--ccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeec
Q 048083 442 WIHSAISWL-NFSSLNNLQTLWGLSMGDDSLF--NQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYA 518 (692)
Q Consensus 442 ~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 518 (692)
+|.+..++. .++.+++|+.| +++++... .+|..++.+++|+.|+ +++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L---~l~~n~l~~~~l~~~~~~l~~L~~L~--------------------------Ls~N 159 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKEL---NVAHNLIQSFKLPEYFSNLTNLEHLD--------------------------LSSN 159 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEE---ECCSSCCCCCCCCGGGGGCTTCCEEE--------------------------CCSS
T ss_pred CCCccccCchhcccCCCCCEE---ECcCCccceecCchhhccCCCCCEEE--------------------------CCCC
Confidence 555543332 23333333333 44443211 1233344444333333 3333
Q ss_pred cCCccccCCCCCCCCcc----EEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccC
Q 048083 519 WRDDYSDIPFKAQANLQ----ELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYE 592 (692)
Q Consensus 519 ~~~~~~~~~l~~~~~L~----~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 592 (692)
.++......+..+++|+ +|+++++. ..++...... .+|+.|++++|.++......+..+++|+.|++++|.+.
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 33332222222222232 45555544 3344344444 57888888888777666666677888888888777664
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=8.4e-17 Score=163.21 Aligned_cols=193 Identities=21% Similarity=0.178 Sum_probs=127.1
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLY 439 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 439 (692)
..+++|+.|++++|.+..++ . +..+++|++|++++|.+..++. +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-G-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-h-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 45677777888887777765 3 7777888888888887777776 777788888888888777665 577777888888
Q ss_pred cccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeecc
Q 048083 440 LNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAW 519 (692)
Q Consensus 440 l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 519 (692)
+++|.+..++. +..+++|+.| +++.+.....+. ++ . +++|+.|++++|.
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L---~l~~n~l~~~~~-l~----------------------~----l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVL---YLDLNQITNISP-LA----------------------G----LTNLQYLSIGNAQ 162 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEE---ECCSSCCCCCGG-GG----------------------G----CTTCCEEECCSSC
T ss_pred CCCCCCCCchh-hcCCCCCCEE---ECCCCccCcCcc-cc----------------------C----CCCccEEEccCCc
Confidence 87777655442 4444444433 454442111110 11 1 2267777777776
Q ss_pred CCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCc
Q 048083 520 RDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEG 593 (692)
Q Consensus 520 ~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 593 (692)
...... +..+++|+.|+++++. ..++. +..+ ++|++|++++|.+.... .+..+++|+.|++++|.+..
T Consensus 163 l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 163 VSDLTP--LANLSKLTTLKADDNKISDISP-LASL-PNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGC-TTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCChh--hcCCCCCCEEECCCCccCcChh-hcCC-CCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 554333 6677777777777766 44443 5566 78888888888777544 37778888888887776644
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=4.1e-17 Score=159.22 Aligned_cols=197 Identities=15% Similarity=0.126 Sum_probs=131.1
Q ss_pred eEEEEeecCCCCCCCChhhhccccccceeeccCCC-ccccCc-cccCCCCCeEEecCC-ccceecC-hhhhccccCceee
Q 048083 364 LLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTF-IDSLPN-SVGNLRYLETLDVKH-TKLRYLP-DSIWKAKKLQHLY 439 (692)
Q Consensus 364 ~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~L~~-~~l~~lp-~~~~~l~~L~~L~ 439 (692)
+|++|++++|.++.+++..+..+++|++|++++|. +..+|+ .+.++++|++|++++ |.++.+| ..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888888887777557788888888888886 777765 567888888888887 6777776 4567788888888
Q ss_pred cccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeec-
Q 048083 440 LNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYA- 518 (692)
Q Consensus 440 l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~- 518 (692)
+++|.+..+|. +..+++|+ .|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~-------------------------------------------------~L~~L~l~~N~ 141 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTD-------------------------------------------------IFFILEITDNP 141 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCC-------------------------------------------------SEEEEEEESCT
T ss_pred CCCCCCccccc-cccccccc-------------------------------------------------cccEEECCCCc
Confidence 88776554432 22222221 2335666666
Q ss_pred cCCccccCCCCCCCCcc-EEEEcccc-ccccccccCccCccceeeeeccC-CCCCchhhhhcC-CCCCeeeecCCccCcc
Q 048083 519 WRDDYSDIPFKAQANLQ-ELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSR-LYWDPMEALEKL-CHLNILRIIGEAYEGK 594 (692)
Q Consensus 519 ~~~~~~~~~l~~~~~L~-~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~-l~~~~~~~l~~l-~~L~~L~l~~~~~~~~ 594 (692)
.........+..+++|+ .|+++++. ..+|...... ++|++|++++|. +.......+..+ ++|+.|++++|.+...
T Consensus 142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp TCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred chhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence 55555555566667777 77777665 5556554455 688888888884 776555667777 7888888877766531
Q ss_pred EEEEecCCCCcccEEEeccCC
Q 048083 595 KMTCQAGGFPQLRVLKLWNLS 615 (692)
Q Consensus 595 ~~~~~~~~~~~L~~L~l~~~~ 615 (692)
+ ...|++|+.|++.++.
T Consensus 221 --~--~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 221 --P--SKGLEHLKELIARNTW 237 (239)
T ss_dssp --C--CTTCTTCSEEECTTC-
T ss_pred --C--hhHhccCceeeccCcc
Confidence 1 1256667777666543
No 79
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=5.9e-19 Score=197.14 Aligned_cols=323 Identities=14% Similarity=0.076 Sum_probs=190.0
Q ss_pred cCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCC-CCCC--CChhhhccccccceeeccCCCccc-
Q 048083 326 DRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGV-YKPK--LSDHVIGKLLHLSYLGLRSTFIDS- 401 (692)
Q Consensus 326 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~--l~~~~~~~l~~L~~L~l~~~~i~~- 401 (692)
..+++|+.|.+.++..... .+..+. ..+++|++|++++| .+.. ++.. +..+++|++|++++|.+..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~-------~~~~l~--~~~~~L~~L~L~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDD-------CLELIA--KSFKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp HHCTTCCEEEEESCBCCHH-------HHHHHH--HHCTTCCEEEEESCEEEEHHHHHHH-HHHCTTCCEEECTTCEEECC
T ss_pred HhCCCCCeEEeeCcEEcHH-------HHHHHH--HhCCCCcEEeCCCcCCCCHHHHHHH-HHhCCCCCEEeCcCCccCCc
Confidence 3678999999998762111 233333 46899999999999 4543 3333 5689999999999987543
Q ss_pred ----cCccccCCCCCeEEecCCcc--ce--ecChhhhccccCceeeccccc-ccccccccCCCcccccccccccC-----
Q 048083 402 ----LPNSVGNLRYLETLDVKHTK--LR--YLPDSIWKAKKLQHLYLNWIH-SAISWLNFSSLNNLQTLWGLSMG----- 467 (692)
Q Consensus 402 ----lp~~~~~l~~L~~L~L~~~~--l~--~lp~~~~~l~~L~~L~l~~~~-~~~~~~~i~~l~~L~~L~~~~~~----- 467 (692)
++.....+++|++|++++|. +. .++..+.++++|++|++++|. ...++..+..+++|+.|..-.+.
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 34444578899999999986 32 233344668999999999983 33455556666777766422111
Q ss_pred -----------------------CCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccc
Q 048083 468 -----------------------DDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYS 524 (692)
Q Consensus 468 -----------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 524 (692)
......++..+..+++|++|+++++. .....+..+...+++|++|++++| .....
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~ 329 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAG 329 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHH
T ss_pred hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHH
Confidence 00011111122345677777777663 222334444445567777777776 22221
Q ss_pred cCC-CCCCCCccEEEEccc--------c----ccccccccCccCccceeeeeccCCCCCchhhhh-cCCCCCeeeec--C
Q 048083 525 DIP-FKAQANLQELYLRGA--------L----RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALE-KLCHLNILRII--G 588 (692)
Q Consensus 525 ~~~-l~~~~~L~~L~L~~~--------~----~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~l~--~ 588 (692)
... ...+++|++|++.++ . ..+......+ ++|++|.+..+.++......+. .+++|+.|+++ +
T Consensus 330 l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 330 LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC-PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC-TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc-hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 111 224667777777331 1 0111111124 6777777766676655555554 47788888877 2
Q ss_pred ----CccCc----cEEEEecCCCCcccEEEeccCCCCcEEEe-cCC-CccccceeecccccccC-CCcCh-hhhhccCcE
Q 048083 589 ----EAYEG----KKMTCQAGGFPQLRVLKLWNLSSLEEWTV-QEA-AMPRLRELEIRSCNKLK-PPEGL-RNLAATLKD 656 (692)
Q Consensus 589 ----~~~~~----~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~-~~~~L~~L~l~~c~~l~-~p~~~-~~l~~sL~~ 656 (692)
+.+.. ..+......+++|+.|++++ .+..... ... .+++|+.|++++|..-. .+..+ ..+++ |+.
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~-L~~ 485 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS-LRK 485 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT-CCE
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC-cCE
Confidence 22221 11111133567788887755 3322111 111 26889999999877322 33233 56788 999
Q ss_pred EEEecCch
Q 048083 657 IVLTNMPS 664 (692)
Q Consensus 657 L~i~~c~~ 664 (692)
|++++|+-
T Consensus 486 L~L~~n~~ 493 (594)
T 2p1m_B 486 LEIRDCPF 493 (594)
T ss_dssp EEEESCSC
T ss_pred EECcCCCC
Confidence 99999983
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=4.2e-16 Score=155.03 Aligned_cols=194 Identities=23% Similarity=0.278 Sum_probs=113.6
Q ss_pred EEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceecChh-hhccccCceeeccc
Q 048083 365 LTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYLPDS-IWKAKKLQHLYLNW 442 (692)
Q Consensus 365 L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~ 442 (692)
.+.++++++.++.+|.. +. .+|+.|++++|.+..+|. .+.++++|++|++++|.++.+|.. +.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~-~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSN-IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSC-CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCC-CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45667777777666654 33 466777777777766664 566777777777777777666544 35677777777777
Q ss_pred ccccccccc-cCCCcccccccccccCCCccccccc-ccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccC
Q 048083 443 IHSAISWLN-FSSLNNLQTLWGLSMGDDSLFNQTF-DFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWR 520 (692)
Q Consensus 443 ~~~~~~~~~-i~~l~~L~~L~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 520 (692)
|.+..+|.. +..+++|+.| +++++....++. .++.+ ++|++|++++|.+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L---~l~~n~l~~~~~~~~~~l--------------------------~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAEL---RLDRNQLKSLPPRVFDSL--------------------------TKLTYLSLGYNEL 145 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEE---ECCSSCCCCCCTTTTTTC--------------------------TTCCEEECCSSCC
T ss_pred CcCCcCCHhHcccccCCCEE---ECCCCccCeeCHHHhCcC--------------------------cCCCEEECCCCcC
Confidence 665544432 2333333333 333332111111 11222 2566666666655
Q ss_pred CccccCCCCCCCCccEEEEcccc-ccccc-cccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCcc
Q 048083 521 DDYSDIPFKAQANLQELYLRGAL-RMFSA-KTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAY 591 (692)
Q Consensus 521 ~~~~~~~l~~~~~L~~L~L~~~~-~~~p~-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 591 (692)
.......+..+++|+.|+++++. ..+|. .+..+ ++|+.|+|++|.++......+..+++|+.|++++|.+
T Consensus 146 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL-TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCHhHccCCcccceeEecCCcCcEeChhHhccC-CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 55555556666777777777665 33433 35555 6777777777777665555566677777777776654
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=1.1e-17 Score=172.67 Aligned_cols=198 Identities=15% Similarity=0.131 Sum_probs=113.5
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccc--cCccccCCCCCeEEecCCccce-ecChhhhccccCceee
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDS--LPNSVGNLRYLETLDVKHTKLR-YLPDSIWKAKKLQHLY 439 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~ 439 (692)
++++.|+++++.+...++. +..+++|++|++++|.+.. +|..+..+++|++|++++|.++ ..|..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6677777777777766655 6667777777777776643 5666677777777777777766 5566677777777777
Q ss_pred cccc-ccc--ccccccCCCcccccccccccCCC-ccc--cccccccccc-ccccccccccc-hhhHHHHHHHhhccCCcc
Q 048083 440 LNWI-HSA--ISWLNFSSLNNLQTLWGLSMGDD-SLF--NQTFDFTKLA-SLRKLGVKCYS-QRVIDSIAELVSRSTRLQ 511 (692)
Q Consensus 440 l~~~-~~~--~~~~~i~~l~~L~~L~~~~~~~~-~~~--~~~~~l~~l~-~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~ 511 (692)
+++| .+. .++..+..+++|+.| +++++ ... .++..+..++ +|++|+++++. ......+......+++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L---~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDEL---NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEE---ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEE---cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 7777 333 133334444444444 44444 211 1233455666 66666666653 111122222223334677
Q ss_pred eEEeeecc-CCccccCCCCCCCCccEEEEccccccccc---cccCccCccceeeeecc
Q 048083 512 SLKLVYAW-RDDYSDIPFKAQANLQELYLRGALRMFSA---KTSSFPRNLKIVTLSMS 565 (692)
Q Consensus 512 ~L~l~~~~-~~~~~~~~l~~~~~L~~L~L~~~~~~~p~---~~~~l~~~L~~L~L~~~ 565 (692)
+|++++|. .+...+..+..+++|+.|++++|....+. .+..+ ++|+.|++++|
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~ 282 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC-TTCCEEECTTS
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC-CCCCEEeccCc
Confidence 77776665 44444445555566666666665422222 23344 55666666655
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=3e-17 Score=163.52 Aligned_cols=177 Identities=20% Similarity=0.185 Sum_probs=84.1
Q ss_pred hccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccccc-cCCCcccccc
Q 048083 383 IGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLN-FSSLNNLQTL 461 (692)
Q Consensus 383 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-i~~l~~L~~L 461 (692)
...+.+|+.|+++++.+..++. ++.+++|++|++++|.++.++ .+..+++|++|++++|.+..++.. ++.+++|+.|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3445555555555555554443 455555555555555555443 455555555555555544433221 1222222222
Q ss_pred cccccCCCccccccc-ccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEc
Q 048083 462 WGLSMGDDSLFNQTF-DFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLR 540 (692)
Q Consensus 462 ~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 540 (692)
+++.+.....+. .++.++ +|+.|++++|.+.......+..+++|+.|+++
T Consensus 115 ---~L~~n~l~~~~~~~~~~l~--------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 115 ---VLVENQLQSLPDGVFDKLT--------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp ---ECTTSCCCCCCTTTTTTCT--------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ---ECCCCcCCccCHHHhccCC--------------------------CCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 222221111111 112222 45555555554444444445555566666666
Q ss_pred ccc-ccccc-cccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCcc
Q 048083 541 GAL-RMFSA-KTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAY 591 (692)
Q Consensus 541 ~~~-~~~p~-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 591 (692)
++. ..+|. .+..+ ++|+.|++++|.+.......+..+++|+.|++++|.+
T Consensus 166 ~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 166 YNQLQSLPEGVFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCccCHHHhcCC-ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 554 33322 23444 6666666666666655544455666666666665544
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=7e-17 Score=163.80 Aligned_cols=209 Identities=16% Similarity=0.119 Sum_probs=154.8
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeeccc
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNW 442 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 442 (692)
..+..+.+..+.+.+... ...+.+|++|+++++.+..+| .+..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 19 ~~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 19 ANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS
T ss_pred HHHHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccC
Confidence 333344555666654333 567899999999999999988 58899999999999999998887 99999999999999
Q ss_pred ccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCc
Q 048083 443 IHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDD 522 (692)
Q Consensus 443 ~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 522 (692)
|.+..++ .+..+++|+.| +++++....++ .+ .. +++|+.|++++|....
T Consensus 95 n~l~~~~-~~~~l~~L~~L---~l~~n~l~~~~-~l----------------------~~----l~~L~~L~l~~n~l~~ 143 (308)
T 1h6u_A 95 NPLKNVS-AIAGLQSIKTL---DLTSTQITDVT-PL----------------------AG----LSNLQVLYLDLNQITN 143 (308)
T ss_dssp CCCSCCG-GGTTCTTCCEE---ECTTSCCCCCG-GG----------------------TT----CTTCCEEECCSSCCCC
T ss_pred CcCCCch-hhcCCCCCCEE---ECCCCCCCCch-hh----------------------cC----CCCCCEEECCCCccCc
Confidence 9876553 34444444444 55555221111 11 12 2378888888887665
Q ss_pred cccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecC
Q 048083 523 YSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAG 601 (692)
Q Consensus 523 ~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 601 (692)
... +..+++|+.|+++++. ..++. +..+ ++|+.|++++|.+.... .+..+++|+.|++++|.+.+.. ...
T Consensus 144 ~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~---~l~ 214 (308)
T 1h6u_A 144 ISP--LAGLTNLQYLSIGNAQVSDLTP-LANL-SKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS---PLA 214 (308)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG-GTTC-TTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG---GGT
T ss_pred Ccc--ccCCCCccEEEccCCcCCCChh-hcCC-CCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCccc---ccc
Confidence 433 7788999999999887 55554 6777 89999999999987644 3788999999999998876543 367
Q ss_pred CCCcccEEEeccCC
Q 048083 602 GFPQLRVLKLWNLS 615 (692)
Q Consensus 602 ~~~~L~~L~l~~~~ 615 (692)
.+++|+.|++++++
T Consensus 215 ~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 215 NTSNLFIVTLTNQT 228 (308)
T ss_dssp TCTTCCEEEEEEEE
T ss_pred CCCCCCEEEccCCe
Confidence 78899999998754
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=5.2e-18 Score=174.99 Aligned_cols=222 Identities=20% Similarity=0.199 Sum_probs=149.3
Q ss_pred cceEEEEeecCCCCCCCChhhhccc--cccceeeccCCCccccCccccCCCCCeEEecCCcccee--cChhhhccccCce
Q 048083 362 LVLLTVLDLEGVYKPKLSDHVIGKL--LHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRY--LPDSIWKAKKLQH 437 (692)
Q Consensus 362 ~~~L~~L~L~~~~~~~l~~~~~~~l--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~ 437 (692)
-..++.++++++.+. +.. +..+ .+++.|++++|.+...+..+.++++|++|++++|.++. +|..+..+++|++
T Consensus 46 ~~~~~~l~l~~~~~~--~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH--PDV-TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp STTSSEEECTTCBCC--HHH-HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred chhheeeccccccCC--HHH-HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 345788999998775 333 7777 89999999999998887778889999999999998873 7888899999999
Q ss_pred eeccccccc-ccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEee
Q 048083 438 LYLNWIHSA-ISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLV 516 (692)
Q Consensus 438 L~l~~~~~~-~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 516 (692)
|++++|.+. ..+..++. +++|++|+++++.......+......+++|++|+++
T Consensus 123 L~L~~~~l~~~~~~~l~~--------------------------~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAK--------------------------NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp EECTTCBCCHHHHHHHTT--------------------------CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred EeCcCcccCHHHHHHHhc--------------------------CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 999998754 23333333 444444444443111111122222233477778777
Q ss_pred ec-cCCcc-ccCCCCCCC-CccEEEEcccc-----ccccccccCccCccceeeeeccC-CCCCchhhhhcCCCCCeeeec
Q 048083 517 YA-WRDDY-SDIPFKAQA-NLQELYLRGAL-----RMFSAKTSSFPRNLKIVTLSMSR-LYWDPMEALEKLCHLNILRII 587 (692)
Q Consensus 517 ~~-~~~~~-~~~~l~~~~-~L~~L~L~~~~-----~~~p~~~~~l~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~l~ 587 (692)
+| ..+.. ....+..++ +|++|++++|. ..+|..+..+ ++|++|++++|. ++...+..+..+++|+.|+++
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 77 55543 233455667 77777777763 3345555566 788888888887 565666677788888888887
Q ss_pred CCc-cCccEEEEecCCCCcccEEEeccC
Q 048083 588 GEA-YEGKKMTCQAGGFPQLRVLKLWNL 614 (692)
Q Consensus 588 ~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 614 (692)
+|. .....+ .....+++|+.|++++|
T Consensus 256 ~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 256 RCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred CCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 774 222111 12345777888888776
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=3.7e-16 Score=156.07 Aligned_cols=214 Identities=18% Similarity=0.131 Sum_probs=134.2
Q ss_pred EeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceecCh-hhhccccCceeecccccc
Q 048083 368 LDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHS 445 (692)
Q Consensus 368 L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~ 445 (692)
.+..+..+..+|.. +. .+|++|++++|.+..++. .+.++++|++|++++|.++.++. .+.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~-l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDN-LP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSS-SC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCC-CC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45556667777776 43 578899999998888875 67888999999999998887654 688888899998888865
Q ss_pred cccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCcccc
Q 048083 446 AISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSD 525 (692)
Q Consensus 446 ~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 525 (692)
...+.. .+.+++ +|++|++++|.......
T Consensus 89 ~~~~~~-------------------------~~~~l~--------------------------~L~~L~l~~n~l~~~~~ 117 (276)
T 2z62_A 89 QSLALG-------------------------AFSGLS--------------------------SLQKLVAVETNLASLEN 117 (276)
T ss_dssp CEECTT-------------------------TTTTCT--------------------------TCCEEECTTSCCCCSTT
T ss_pred CccChh-------------------------hhcCCc--------------------------cccEEECCCCCccccCc
Confidence 543311 122222 44444444444444434
Q ss_pred CCCCCCCCccEEEEcccc-cc--ccccccCccCccceeeeeccCCCCCchhhhhcCCCCC----eeeecCCccCccEEEE
Q 048083 526 IPFKAQANLQELYLRGAL-RM--FSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLN----ILRIIGEAYEGKKMTC 598 (692)
Q Consensus 526 ~~l~~~~~L~~L~L~~~~-~~--~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~ 598 (692)
..+..+++|++|+++++. .. +|..+..+ ++|++|++++|.+.......+..+++|+ .|++++|.+.. ++.
T Consensus 118 ~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~--~~~ 194 (276)
T 2z62_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQP 194 (276)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE--ECT
T ss_pred hhcccCCCCCEEECcCCccceecCchhhccC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc--cCc
Confidence 445666677777777665 22 56677777 8888888888888766555566555555 66676666542 111
Q ss_pred ecCCCCcccEEEeccCCCCcEEEecC-CCccccceeeccccc
Q 048083 599 QAGGFPQLRVLKLWNLSSLEEWTVQE-AAMPRLRELEIRSCN 639 (692)
Q Consensus 599 ~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~ 639 (692)
......+|+.|+++++. ++.++... ..+++|+.|++++++
T Consensus 195 ~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 195 GAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 12223356666666533 44444322 345566666666543
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=1.4e-16 Score=159.95 Aligned_cols=197 Identities=16% Similarity=0.097 Sum_probs=90.0
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceecChhhhccccCcee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHL 438 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 438 (692)
.++++++.++++++.++.+|.. +. ++++.|++++|.+..++ ..+.++++|++|++++|.++.++.. ..+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~-~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPD-LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSC-CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCC-CC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 3444555555555555555544 22 34555555555554442 3345555555555555555544432 445555555
Q ss_pred ecccccccccccccCCCcccccccccccCCCccccccc-ccccccccccccccccchhhHHHHHHHhhccCCcceEEeee
Q 048083 439 YLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTF-DFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVY 517 (692)
Q Consensus 439 ~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 517 (692)
++++|.+..+|..+..+++|+.| +++.+....+|. .+..++ +|+.|++++
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L---~l~~N~l~~l~~~~~~~l~--------------------------~L~~L~L~~ 133 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVL---DVSFNRLTSLPLGALRGLG--------------------------ELQELYLKG 133 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEE---ECCSSCCCCCCSSTTTTCT--------------------------TCCEEECTT
T ss_pred ECCCCcCCcCchhhccCCCCCEE---ECCCCcCcccCHHHHcCCC--------------------------CCCEEECCC
Confidence 55555554444444333333333 344432222211 233333 344444444
Q ss_pred ccCCccccCCCCCCCCccEEEEcccc-cccccc-ccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCcc
Q 048083 518 AWRDDYSDIPFKAQANLQELYLRGAL-RMFSAK-TSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAY 591 (692)
Q Consensus 518 ~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 591 (692)
|.+.......+..+++|+.|+++++. ..+|.. +..+ ++|+.|+|++|.+... +..+..+++|+.+++.+|.+
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l-~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL-ENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC-TTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCB
T ss_pred CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc-CCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCc
Confidence 44443333344445555555555544 333322 2334 5555555555555432 22334445555555555543
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=5e-16 Score=157.89 Aligned_cols=203 Identities=17% Similarity=0.089 Sum_probs=143.3
Q ss_pred CcceEEEEeecCCCCCC-CChhhh--ccccccceeeccCCCcccc-C----ccccCCCCCeEEecCCccceecC-hhhhc
Q 048083 361 GLVLLTVLDLEGVYKPK-LSDHVI--GKLLHLSYLGLRSTFIDSL-P----NSVGNLRYLETLDVKHTKLRYLP-DSIWK 431 (692)
Q Consensus 361 ~~~~L~~L~L~~~~~~~-l~~~~~--~~l~~L~~L~l~~~~i~~l-p----~~~~~l~~L~~L~L~~~~l~~lp-~~~~~ 431 (692)
.+++|+.|++++|.+.. .|.. + ..+++|++|++++|.+... | ..+..+++|++|++++|.++.++ ..+..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 45669999999998874 4444 5 7888999999999887652 1 23456888999999999888665 57788
Q ss_pred cccCceeecccccccc---cccccCCCcccccccccccCCCcccccccccccccccccccccccchh-hHHHHHHHhhcc
Q 048083 432 AKKLQHLYLNWIHSAI---SWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQR-VIDSIAELVSRS 507 (692)
Q Consensus 432 l~~L~~L~l~~~~~~~---~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~l~~~~~~~ 507 (692)
+++|++|++++|.+.. ++... .++.+++|+.|+++++.-. .......+.+.+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~------------------------~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAAL------------------------CPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTS------------------------CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred CCCCCEEECCCCCCccchhhhHHH------------------------hhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 8899999998887532 11110 2234555666666555211 122211122233
Q ss_pred CCcceEEeeeccCCccccCCCCCC---CCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCe
Q 048083 508 TRLQSLKLVYAWRDDYSDIPFKAQ---ANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNI 583 (692)
Q Consensus 508 ~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 583 (692)
++|++|++++|.+....+..+..+ ++|++|+++++. ..+|..+ +++|+.|+|++|+++.. +.+..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~--~~~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRA--PQPDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSC--CCTTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCC--chhhhCCCccE
Confidence 499999999998887765555555 699999999987 7777655 37999999999998864 33678899999
Q ss_pred eeecCCccCc
Q 048083 584 LRIIGEAYEG 593 (692)
Q Consensus 584 L~l~~~~~~~ 593 (692)
|++++|.+.+
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999888764
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.3e-15 Score=152.94 Aligned_cols=198 Identities=17% Similarity=0.167 Sum_probs=153.9
Q ss_pred hccccccceeeccCCCccccCccccCCCCCeEEecCCccceec-ChhhhccccCceeecccccccccccccCCCcccccc
Q 048083 383 IGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTL 461 (692)
Q Consensus 383 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L 461 (692)
+.++++|+.++++++.+..+|..+. ++++.|++++|.++.+ |..+..+++|++|++++|.+..++.. +.+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 6788999999999999999998764 7899999999999976 56799999999999999988766543 444444444
Q ss_pred cccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcc
Q 048083 462 WGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRG 541 (692)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~ 541 (692)
+++++....+|..+..+ ++|+.|++++|.++......+..+++|+.|++++
T Consensus 83 ---~Ls~N~l~~l~~~~~~l--------------------------~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 83 ---DLSHNQLQSLPLLGQTL--------------------------PALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp ---ECCSSCCSSCCCCTTTC--------------------------TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred ---ECCCCcCCcCchhhccC--------------------------CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence 77776433333322222 2788888888888777777889999999999999
Q ss_pred cc-cccccc-ccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCC
Q 048083 542 AL-RMFSAK-TSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLS 615 (692)
Q Consensus 542 ~~-~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 615 (692)
+. ..+|.. +..+ ++|+.|+|++|+++......+..+++|+.|++++|.+. .++......++|+.|.+.+++
T Consensus 134 N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 134 NELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp SCCCCCCTTTTTTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCC
T ss_pred CCCCccChhhcccc-cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCCC
Confidence 87 555543 4566 89999999999998877777888999999999998876 334445566789999998754
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=3.5e-16 Score=155.77 Aligned_cols=85 Identities=29% Similarity=0.332 Sum_probs=44.3
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc-ccCCCCCeEEecCCccceecCh-hhhccccCce
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS-VGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQH 437 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~ 437 (692)
..+++|++|++++|.+..++ . +..+++|++|++++|.+..+|.. ++++++|++|++++|.++.+|. .+..+++|++
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 44555555555555555432 2 55555555555555555554432 3555555555555555554433 2455555555
Q ss_pred eeccccccc
Q 048083 438 LYLNWIHSA 446 (692)
Q Consensus 438 L~l~~~~~~ 446 (692)
|++++|.+.
T Consensus 138 L~L~~n~l~ 146 (272)
T 3rfs_A 138 LNLAHNQLQ 146 (272)
T ss_dssp EECCSSCCC
T ss_pred EECCCCccC
Confidence 555555444
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=2.9e-15 Score=148.98 Aligned_cols=195 Identities=22% Similarity=0.240 Sum_probs=124.1
Q ss_pred cccceeeccCCCccccCccccCCCCCeEEecCCccceecCh-hhhccccCceeeccccccccccccc-CCCccccccccc
Q 048083 387 LHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHSAISWLNF-SSLNNLQTLWGL 464 (692)
Q Consensus 387 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~i-~~l~~L~~L~~~ 464 (692)
.++++++++++.+..+|..+. .+|++|++++|+++.+|. .+.++++|++|++++|.+..+|..+ ..+++|+.|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L--- 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL--- 90 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE---
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE---
Confidence 467899999999999997664 689999999999998874 7899999999999999877666543 344444444
Q ss_pred ccCCCcccccccc-cccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc
Q 048083 465 SMGDDSLFNQTFD-FTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL 543 (692)
Q Consensus 465 ~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 543 (692)
+++.+....+|.. +.. +++|+.|++++|.+.......+..+++|++|+++++.
T Consensus 91 ~l~~n~l~~~~~~~~~~--------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQ--------------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp ECCSSCCCCCCTTTTTT--------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCcCCHhHccc--------------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence 5555432221111 111 2266666666666666555566667777777777665
Q ss_pred -cccccc-ccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccC
Q 048083 544 -RMFSAK-TSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNL 614 (692)
Q Consensus 544 -~~~p~~-~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 614 (692)
..+|.. +..+ ++|++|+|++|.+.......+..+++|+.|++++|.+.... +..+..+++|+.|++.++
T Consensus 145 l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 145 LQSLPKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCccCHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCC
Confidence 444432 4455 67777777777666655555666666666666666554211 111234555555555543
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=1.8e-15 Score=147.53 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=55.0
Q ss_pred eeeeecc-CCCCCchhhhhcCCCCC-eeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEec-CCCc-cccceee
Q 048083 559 IVTLSMS-RLYWDPMEALEKLCHLN-ILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQ-EAAM-PRLRELE 634 (692)
Q Consensus 559 ~L~L~~~-~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~-~~L~~L~ 634 (692)
.|++++| .+.......+.++++|+ .|++++|.+. .++......++|+.|++++++.++.++.. ...+ ++|+.|+
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 5566655 55544444455666666 6666655543 22221112256777777765556666432 3445 6777777
Q ss_pred cccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 635 IRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 635 l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
+++ +.++ +|.. .+++ |+.|.+.++.
T Consensus 212 l~~-N~l~~l~~~--~~~~-L~~L~l~~~~ 237 (239)
T 2xwt_C 212 VSQ-TSVTALPSK--GLEH-LKELIARNTW 237 (239)
T ss_dssp CTT-CCCCCCCCT--TCTT-CSEEECTTC-
T ss_pred CCC-CccccCChh--Hhcc-CceeeccCcc
Confidence 777 3455 6554 4556 7777776654
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=5.4e-17 Score=170.69 Aligned_cols=244 Identities=17% Similarity=0.113 Sum_probs=122.4
Q ss_pred HhhhccCCcceEEEEeecCCCCCCC-----ChhhhccccccceeeccCCCccc----cCccc-------cCCCCCeEEec
Q 048083 354 DKIISNRGLVLLTVLDLEGVYKPKL-----SDHVIGKLLHLSYLGLRSTFIDS----LPNSV-------GNLRYLETLDV 417 (692)
Q Consensus 354 ~~~~~~~~~~~L~~L~L~~~~~~~l-----~~~~~~~l~~L~~L~l~~~~i~~----lp~~~-------~~l~~L~~L~L 417 (692)
...+ ..+++|++|+|++|.+... +.. +..+++|++|+|++|.+.. +|..+ ..+++|++|+|
T Consensus 25 ~~~l--~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 25 FAVL--LEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp SHHH--HHCSCCCEEECTTSEECHHHHHHHHHT-TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHH--hcCCCccEEECCCCCCCHHHHHHHHHH-HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3445 5666677777777766532 222 5566677777776654432 23222 56677777777
Q ss_pred CCcccee-----cChhhhccccCceeeccccccccc-ccccCC-CcccccccccccCCCccccccccccccccccccccc
Q 048083 418 KHTKLRY-----LPDSIWKAKKLQHLYLNWIHSAIS-WLNFSS-LNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVK 490 (692)
Q Consensus 418 ~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~-~~~i~~-l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 490 (692)
++|.++. +|..+.++++|++|++++|.+... +..+.. +..+.. ... -+..++|+.|+++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~---~~~-----------~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV---NKK-----------AKNAPPLRSIICG 167 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHH---HHH-----------HHTCCCCCEEECC
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhh---hhh-----------cccCCCCcEEECC
Confidence 7776654 556666777777777777665411 111111 100100 000 0000344444444
Q ss_pred ccch--hhHHHHHHHhhccCCcceEEeeeccCCcc-----ccCCCCCCCCccEEEEcccc------ccccccccCccCcc
Q 048083 491 CYSQ--RVIDSIAELVSRSTRLQSLKLVYAWRDDY-----SDIPFKAQANLQELYLRGAL------RMFSAKTSSFPRNL 557 (692)
Q Consensus 491 ~~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~L~~~~------~~~p~~~~~l~~~L 557 (692)
++.- .....+......+++|++|++++|.+... ....+..+++|+.|+|++|. ..+|..+..+ ++|
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~-~~L 246 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-PNL 246 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC-TTC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC-CCc
Confidence 4310 11111112112233666666666654421 12245566666666666654 1244455555 667
Q ss_pred ceeeeeccCCCCCc----hhhhh--cCCCCCeeeecCCccCcc---EEEEec-CCCCcccEEEeccCC
Q 048083 558 KIVTLSMSRLYWDP----MEALE--KLCHLNILRIIGEAYEGK---KMTCQA-GGFPQLRVLKLWNLS 615 (692)
Q Consensus 558 ~~L~L~~~~l~~~~----~~~l~--~l~~L~~L~l~~~~~~~~---~~~~~~-~~~~~L~~L~l~~~~ 615 (692)
++|+|++|.+.... ...+. .+++|+.|++++|.+... .++... ..+++|+.|++++|+
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 77777777665431 22332 266777777776665542 112122 345677777776643
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=4.5e-17 Score=171.29 Aligned_cols=274 Identities=14% Similarity=0.060 Sum_probs=179.0
Q ss_pred eEEEEeecCCCCCCCChhhhccccccceeeccCCCccc-----cCccccCCCCCeEEecCCccce----ecChhh-----
Q 048083 364 LLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDS-----LPNSVGNLRYLETLDVKHTKLR----YLPDSI----- 429 (692)
Q Consensus 364 ~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~L~~~~l~----~lp~~~----- 429 (692)
.|+...++...+..++.. +..+++|++|++++|.+.. ++..+.++++|++|+|++|.+. .+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCEESSCCSHHHHTTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 334334444444466666 7888888899998887754 3445677888888888887433 334443
Q ss_pred --hccccCceeecccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccc--hhhHHHHHHHhh
Q 048083 430 --WKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYS--QRVIDSIAELVS 505 (692)
Q Consensus 430 --~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~~~ 505 (692)
..+++|++|++++|.+... ....+|..+..+++|++|+++++. ......+.....
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~---------------------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 147 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPT---------------------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTT---------------------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred HHhhCCcccEEECCCCcCCHH---------------------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHH
Confidence 5678888888887765420 000122244555666666666651 111222222211
Q ss_pred cc---------CCcceEEeeeccCCcccc----CCCCCCCCccEEEEcccc-c------cccccccCccCccceeeeecc
Q 048083 506 RS---------TRLQSLKLVYAWRDDYSD----IPFKAQANLQELYLRGAL-R------MFSAKTSSFPRNLKIVTLSMS 565 (692)
Q Consensus 506 ~~---------~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~~~-~------~~p~~~~~l~~~L~~L~L~~~ 565 (692)
.+ ++|++|++++|.+..... ..+..+++|++|++++|. . ..|..+..+ ++|+.|+|++|
T Consensus 148 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n 226 (386)
T 2ca6_A 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDN 226 (386)
T ss_dssp HHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSS
T ss_pred HHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCC
Confidence 22 499999999998764322 356678899999999986 3 234467777 99999999999
Q ss_pred CCC----CCchhhhhcCCCCCeeeecCCccCccE---EEEec--CCCCcccEEEeccCCCCcE-----EEecC-CCcccc
Q 048083 566 RLY----WDPMEALEKLCHLNILRIIGEAYEGKK---MTCQA--GGFPQLRVLKLWNLSSLEE-----WTVQE-AAMPRL 630 (692)
Q Consensus 566 ~l~----~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~--~~~~~L~~L~l~~~~~l~~-----l~~~~-~~~~~L 630 (692)
.++ ...+..+..+++|+.|++++|.+.+.. ++... +.+++|+.|+|++|. +.. ++... ..+++|
T Consensus 227 ~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L 305 (386)
T 2ca6_A 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDL 305 (386)
T ss_dssp CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCc
Confidence 985 334556789999999999999876532 11222 448999999999865 544 55444 457999
Q ss_pred ceeecccccccC-CC--cCh-hhhhccCcEEEEecC
Q 048083 631 RELEIRSCNKLK-PP--EGL-RNLAATLKDIVLTNM 662 (692)
Q Consensus 631 ~~L~l~~c~~l~-~p--~~~-~~l~~sL~~L~i~~c 662 (692)
+.|++++|+.-. .| ..+ ..+++ ++.+++..-
T Consensus 306 ~~L~l~~N~l~~~~~~~~~l~~~l~~-~~~~~l~~~ 340 (386)
T 2ca6_A 306 LFLELNGNRFSEEDDVVDEIREVFST-RGRGELDEL 340 (386)
T ss_dssp CEEECTTSBSCTTSHHHHHHHHHHHH-HTCCEECCC
T ss_pred eEEEccCCcCCcchhHHHHHHHHhhh-cCcchhhhc
Confidence 999999976444 32 223 34566 776666543
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.4e-14 Score=149.90 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=74.1
Q ss_pred CCCCCC-CccEEEEcccc-ccccccccCccCccceeeeec-cCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCC
Q 048083 527 PFKAQA-NLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSM-SRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGF 603 (692)
Q Consensus 527 ~l~~~~-~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 603 (692)
.+..+. .++.|+++++. ..+|...... .+|++|++.+ |.+...+...|.++++|+.|++++|.+... ....|
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l----p~~~~ 222 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL----PSYGL 222 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC----CSSSC
T ss_pred chhhcchhhhhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc----Chhhh
Confidence 344333 56777777765 5566555555 6788888875 456666666678888888888888876531 23457
Q ss_pred CcccEEEeccCCCCcEEEecCCCccccceeeccc
Q 048083 604 PQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRS 637 (692)
Q Consensus 604 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 637 (692)
.+|+.|.+.++.+++.+| ....+++|+.+++.+
T Consensus 223 ~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 888888888888888888 356688888888864
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=2.4e-14 Score=140.57 Aligned_cols=175 Identities=22% Similarity=0.222 Sum_probs=110.9
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceecC-hhhhccccCceeec
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQHLYL 440 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l 440 (692)
...++++++++.++.+|.. +. .+|+.|++++|.+..+++ .+.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 3456788888888888876 44 578888888888877764 5778888888888888887664 45777888888888
Q ss_pred ccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccC
Q 048083 441 NWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWR 520 (692)
Q Consensus 441 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 520 (692)
++|.+..++.. .+..++ +|+.|++++|.+
T Consensus 91 ~~n~l~~~~~~-------------------------~~~~l~--------------------------~L~~L~L~~N~l 119 (251)
T 3m19_A 91 ANNQLASLPLG-------------------------VFDHLT--------------------------QLDKLYLGGNQL 119 (251)
T ss_dssp TTSCCCCCCTT-------------------------TTTTCT--------------------------TCCEEECCSSCC
T ss_pred CCCcccccChh-------------------------HhcccC--------------------------CCCEEEcCCCcC
Confidence 88766544321 111111 444444444444
Q ss_pred CccccCCCCCCCCccEEEEcccc-ccccc-cccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccC
Q 048083 521 DDYSDIPFKAQANLQELYLRGAL-RMFSA-KTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYE 592 (692)
Q Consensus 521 ~~~~~~~l~~~~~L~~L~L~~~~-~~~p~-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 592 (692)
+......+..+++|+.|+++++. ..+|. .+..+ ++|+.|+|++|.+.......+..+++|+.|++++|.+.
T Consensus 120 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcChhHhccCCcccEEECcCCcCCccCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 44444445555566666666554 33333 35555 66666777666666555555666667777777666554
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=6.9e-16 Score=160.52 Aligned_cols=240 Identities=15% Similarity=0.159 Sum_probs=142.9
Q ss_pred HHHhhhccCCcceEEEEeecCCCCCCCCh----hhhcccc-ccceeeccCCCcccc-CccccCC-----CCCeEEecCCc
Q 048083 352 FLDKIISNRGLVLLTVLDLEGVYKPKLSD----HVIGKLL-HLSYLGLRSTFIDSL-PNSVGNL-----RYLETLDVKHT 420 (692)
Q Consensus 352 ~~~~~~~~~~~~~L~~L~L~~~~~~~l~~----~~~~~l~-~L~~L~l~~~~i~~l-p~~~~~l-----~~L~~L~L~~~ 420 (692)
..+.++ ...++|++|+|++|.++..+. ..+..++ +|++|++++|.+... +..+..+ ++|++|++++|
T Consensus 13 ~~~~~~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 13 PVEEFT--SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HHHHHH--TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HHHHHH--hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 456666 666779999999998887764 4477777 899999999888765 3344443 88999999999
Q ss_pred cceecC-hhh----hcc-ccCceeeccccccccccc-ccCCCcccccccccccCCCcccccccccccc-ccccccccccc
Q 048083 421 KLRYLP-DSI----WKA-KKLQHLYLNWIHSAISWL-NFSSLNNLQTLWGLSMGDDSLFNQTFDFTKL-ASLRKLGVKCY 492 (692)
Q Consensus 421 ~l~~lp-~~~----~~l-~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~ 492 (692)
.++..+ ..+ ..+ ++|++|++++|.+...+. .+.. .+..+ ++|++|+++++
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~----------------------~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ----------------------AFSNLPASITSLNLRGN 148 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH----------------------HHTTSCTTCCEEECTTS
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH----------------------HHHhCCCceeEEEccCC
Confidence 887543 333 333 788899888887654322 1110 12221 24455555544
Q ss_pred --chhhHHHHHHHhhccC-CcceEEeeeccCCccccC----CCCCC-CCccEEEEcccc-cc-----ccccccCccCccc
Q 048083 493 --SQRVIDSIAELVSRST-RLQSLKLVYAWRDDYSDI----PFKAQ-ANLQELYLRGAL-RM-----FSAKTSSFPRNLK 558 (692)
Q Consensus 493 --~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~L~~~~-~~-----~p~~~~~l~~~L~ 558 (692)
.......+.......+ +|++|++++|.++..... .+..+ ++|+.|+|++|. .. ++..+...+++|+
T Consensus 149 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 149 DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCC
T ss_pred cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCce
Confidence 1112222322222222 677777777765544332 22333 477777777765 22 4444545435788
Q ss_pred eeeeeccCCCCCchhh----hhcCCCCCeeeecCCccCccE------EEEecCCCCcccEEEeccCC
Q 048083 559 IVTLSMSRLYWDPMEA----LEKLCHLNILRIIGEAYEGKK------MTCQAGGFPQLRVLKLWNLS 615 (692)
Q Consensus 559 ~L~L~~~~l~~~~~~~----l~~l~~L~~L~l~~~~~~~~~------~~~~~~~~~~L~~L~l~~~~ 615 (692)
+|+|++|.+....... +..+++|+.|++++|.+.... +......+++|+.|++++++
T Consensus 229 ~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 8888888877655433 345677888888777632211 11123355667777776643
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=5.8e-16 Score=170.63 Aligned_cols=191 Identities=18% Similarity=0.175 Sum_probs=89.9
Q ss_pred CcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeec
Q 048083 361 GLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYL 440 (692)
Q Consensus 361 ~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l 440 (692)
.+..+..+.+..+.+..+.. +..+.+|+.|++++|.+..+|. +..|++|+.|+|++|.++.+|. +..+++|++|+|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEEC
Confidence 33444445555555544433 4556666666666666666653 6666666666666666666554 666666666666
Q ss_pred ccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccC
Q 048083 441 NWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWR 520 (692)
Q Consensus 441 ~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 520 (692)
++|.+..++ .+..+++|+.| +++.+....+ ..+..+++|+.|+++++.......+. .+++|+.|+|++|.+
T Consensus 95 s~N~l~~l~-~l~~l~~L~~L---~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l~~l~----~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 95 DENKIKDLS-SLKDLKKLKSL---SLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLS----RLTKLDTLSLEDNQI 165 (605)
T ss_dssp CSSCCCCCT-TSTTCTTCCEE---ECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGG----SCTTCSEEECCSSCC
T ss_pred cCCCCCCCh-hhccCCCCCEE---EecCCCCCCC-ccccCCCccCEEECCCCccCCchhhc----ccCCCCEEECcCCcC
Confidence 666655433 33333333333 4444421111 12333444444444333110001111 122444444444444
Q ss_pred CccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCC
Q 048083 521 DDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLY 568 (692)
Q Consensus 521 ~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~ 568 (692)
....+ +..+++|+.|+|++|. ..+| .+..+ ++|+.|+|++|.+.
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l-~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGL-KNLDVLELFSQECL 210 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTC-TTCSEEECCSEEEE
T ss_pred CCchh--hccCCCCCEEECcCCCCCCCh-HHccC-CCCCEEEccCCcCc
Confidence 33322 4444444444444443 2222 23344 44444444444443
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=7.4e-16 Score=154.76 Aligned_cols=171 Identities=19% Similarity=0.183 Sum_probs=83.5
Q ss_pred ccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCcccccccc
Q 048083 384 GKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWG 463 (692)
Q Consensus 384 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~ 463 (692)
..+.+|++|++++|.+..+|. +..+++|++|++++|.++.++. +.++++|++|++++|.+..++. +..+++|+.|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L-- 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL-- 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE--
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE--
Confidence 344555555555555544443 4445555555555555554443 4555555555555554433221 2233332222
Q ss_pred cccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc
Q 048083 464 LSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL 543 (692)
Q Consensus 464 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 543 (692)
+++.+....+ ..+..++ +|+.|++++|..... ..+..+++|+.|+++++.
T Consensus 118 -~L~~n~i~~~-~~l~~l~--------------------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 118 -SLEHNGISDI-NGLVHLP--------------------------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp -ECTTSCCCCC-GGGGGCT--------------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred -ECCCCcCCCC-hhhcCCC--------------------------CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCc
Confidence 3333311110 0122222 455555555544333 344555666666666555
Q ss_pred -ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCc
Q 048083 544 -RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEG 593 (692)
Q Consensus 544 -~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 593 (692)
..++. +..+ ++|+.|++++|.++.. +.+..+++|+.|++++|.+..
T Consensus 168 l~~~~~-l~~l-~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 168 ISDIVP-LAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCGG-GTTC-TTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred cccchh-hcCC-CccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence 33332 5555 6677777777766543 346667777777776665543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=2.2e-14 Score=148.33 Aligned_cols=236 Identities=14% Similarity=0.081 Sum_probs=150.1
Q ss_pred EEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccce-ecCh-hhhccccCceee-cc
Q 048083 366 TVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLR-YLPD-SIWKAKKLQHLY-LN 441 (692)
Q Consensus 366 ~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~-~lp~-~~~~l~~L~~L~-l~ 441 (692)
++++.+++.++.+|.. + ..++++|+|++|.|..+|+ .|.++++|++|+|++|.+. .+|. .+.++++++.+. +.
T Consensus 12 ~~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTT-C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcC-c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3455666666666655 3 2456666666666666664 3566666666666666543 3443 344555544432 22
Q ss_pred cccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCC
Q 048083 442 WIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRD 521 (692)
Q Consensus 442 ~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 521 (692)
+|.+..+++ ..+..++ +|+.|++++|.+.
T Consensus 89 ~N~l~~l~~-------------------------~~f~~l~--------------------------~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 89 ANNLLYINP-------------------------EAFQNLP--------------------------NLQYLLISNTGIK 117 (350)
T ss_dssp ETTCCEECT-------------------------TSBCCCT--------------------------TCCEEEEEEECCS
T ss_pred CCcccccCc-------------------------hhhhhcc--------------------------ccccccccccccc
Confidence 232222211 1222222 6666677777665
Q ss_pred ccccCCCCCCCCccEEEEcccc--cccc-ccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEE
Q 048083 522 DYSDIPFKAQANLQELYLRGAL--RMFS-AKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTC 598 (692)
Q Consensus 522 ~~~~~~l~~~~~L~~L~L~~~~--~~~p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 598 (692)
......+.....+..|++.++. ..+| ..+..++..++.|+|++|.++...... ....+|+.|.+.+++........
T Consensus 118 ~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-FNGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS-STTEEEEEEECTTCTTCCCCCTT
T ss_pred cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh-ccccchhHHhhccCCcccCCCHH
Confidence 5544445555567777776543 3444 345555467999999999998654443 34568999999865443322222
Q ss_pred ecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcChhhhhccCcEEEEec
Q 048083 599 QAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTN 661 (692)
Q Consensus 599 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~ 661 (692)
.+..+++|+.|+++++ .++.+|. +.+.+|+.|.+.+|..++ +|. +..+++ |+.+++.+
T Consensus 197 ~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~-L~~l~l~~ 255 (350)
T 4ay9_X 197 VFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVA-LMEASLTY 255 (350)
T ss_dssp TTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCS-CCEEECSC
T ss_pred HhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCC-chhCcC-hhhCcCCC
Confidence 4567899999999985 6888874 458899999999999999 884 788999 99999864
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=1.8e-15 Score=157.45 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=87.1
Q ss_pred cCCcccceEEEecCccccCcchhhhhHHHhhhccCCcc-eEEEEeecCCCCCCCChhhhccc-----cccceeeccCCCc
Q 048083 326 DRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLV-LLTVLDLEGVYKPKLSDHVIGKL-----LHLSYLGLRSTFI 399 (692)
Q Consensus 326 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~l~~~~~~~l-----~~L~~L~l~~~~i 399 (692)
...++|+.|.+.++.+...+ ...+...| ..++ +|++|+|++|.+.......+..+ ++|++|++++|.+
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~----~~~l~~~l--~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSIS----TVELIQAF--ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSC----HHHHHHHH--HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred hCCCCceEEEccCCCCChHH----HHHHHHHH--HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 34566999999998844432 11233667 7888 99999999999986654446665 9999999999998
Q ss_pred cccCcc-----ccCC-CCCeEEecCCccceecCh-hhh----c-cccCceeeccccccc
Q 048083 400 DSLPNS-----VGNL-RYLETLDVKHTKLRYLPD-SIW----K-AKKLQHLYLNWIHSA 446 (692)
Q Consensus 400 ~~lp~~-----~~~l-~~L~~L~L~~~~l~~lp~-~~~----~-l~~L~~L~l~~~~~~ 446 (692)
...+.. +..+ ++|++|++++|.++..+. .+. . .++|++|++++|.+.
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 766532 4455 899999999999986653 333 3 369999999999876
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=7.3e-15 Score=159.95 Aligned_cols=178 Identities=17% Similarity=0.132 Sum_probs=114.5
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeeccc
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNW 442 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 442 (692)
.+|+.|++++|.++.+|.. + .++|++|++++|.+..+| ..+++|++|++++|+++.+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~-l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN-L--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC-C--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHh-H--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 3889999999999888876 4 378999999999999888 458899999999999988888 655 899999999
Q ss_pred ccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCc
Q 048083 443 IHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDD 522 (692)
Q Consensus 443 ~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 522 (692)
|.+..+|. .+++|+. ++++++....+|. .++ +|+.|++++|.++.
T Consensus 130 N~l~~lp~---~l~~L~~---L~Ls~N~l~~lp~---~l~--------------------------~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEY---INADNNQLTMLPE---LPT--------------------------SLEVLSVRNNQLTF 174 (571)
T ss_dssp SCCSCCCC---CCTTCCE---EECCSSCCSCCCC---CCT--------------------------TCCEEECCSSCCSC
T ss_pred CcCCCCCC---cCccccE---EeCCCCccCcCCC---cCC--------------------------CcCEEECCCCCCCC
Confidence 98877665 3444444 4777774333332 233 55555555554444
Q ss_pred cccCCCCCCCCccEEEEcccc-ccccccccCccCcc-------ceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCc
Q 048083 523 YSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNL-------KIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEG 593 (692)
Q Consensus 523 ~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L-------~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 593 (692)
... +. ++|+.|+|++|. ..+|. + +.+| +.|+|++|.++.. +..+..+++|+.|++++|.+.+
T Consensus 175 lp~--l~--~~L~~L~Ls~N~L~~lp~-~---~~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 175 LPE--LP--ESLEALDVSTNLLESLPA-V---PVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCC--CC--TTCCEEECCSSCCSSCCC-C---C--------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCH
T ss_pred cch--hh--CCCCEEECcCCCCCchhh-H---HHhhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCC
Confidence 222 22 556666665554 44443 2 1244 6666666665542 2334446666666666665543
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=1.9e-14 Score=144.50 Aligned_cols=188 Identities=17% Similarity=0.177 Sum_probs=140.4
Q ss_pred ccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCcccccccccc
Q 048083 386 LLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLS 465 (692)
Q Consensus 386 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~ 465 (692)
+.++..+.+..+.+..+.. ...+++|+.|++++|.++.++. +..+++|++|++++|.+..++. +..+++|+.| +
T Consensus 23 l~~~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L---~ 96 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWL---F 96 (291)
T ss_dssp HHHHHHHHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE---E
T ss_pred HHHHHHHHhcCCCcccccc-hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEE---E
Confidence 3344455666666655433 5679999999999999998864 8899999999999998877665 5555555555 6
Q ss_pred cCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-c
Q 048083 466 MGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-R 544 (692)
Q Consensus 466 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~ 544 (692)
++.+....++ .+..+ ++|+.|++++|.+... ..+..+++|+.|+++++. .
T Consensus 97 l~~n~l~~~~-~l~~l--------------------------~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 97 LDENKVKDLS-SLKDL--------------------------KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp CCSSCCCCGG-GGTTC--------------------------TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCCCh-hhccC--------------------------CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC
Confidence 6666322211 12222 3777778877766654 457788999999999987 5
Q ss_pred cccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCC
Q 048083 545 MFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLS 615 (692)
Q Consensus 545 ~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 615 (692)
.+ ..+..+ ++|+.|++++|.+..... +..+++|+.|++++|.+.+. .....+++|+.|++++++
T Consensus 148 ~~-~~l~~l-~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l---~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 148 DI-TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CC-GGGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEEEEEEE
T ss_pred cc-hhhccC-CCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC---hhhccCCCCCEEECcCCc
Confidence 55 467788 999999999999987543 89999999999999988753 246789999999999853
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=2e-14 Score=158.34 Aligned_cols=192 Identities=16% Similarity=0.172 Sum_probs=149.2
Q ss_pred ccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCcccccccccc
Q 048083 386 LLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLS 465 (692)
Q Consensus 386 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~ 465 (692)
+..+..+.+..+.+..++. +..+.+|+.|++++|.+..+| .+..+++|+.|+|++|.+..++. +..+++|+.| +
T Consensus 20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L---~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWL---F 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEE---E
T ss_pred HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEE---E
Confidence 4456667777777766654 678999999999999999887 58999999999999999887765 5566655555 7
Q ss_pred cCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-c
Q 048083 466 MGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-R 544 (692)
Q Consensus 466 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~ 544 (692)
++.+....+ +.+..+++|+.|+++++.......+.. +++|+.|+|++|.+... ..+..+++|+.|+|++|. .
T Consensus 94 Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~----l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 94 LDENKIKDL-SSLKDLKKLKSLSLEHNGISDINGLVH----LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCSSCCCCC-TTSTTCTTCCEEECTTSCCCCCGGGGG----CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred CcCCCCCCC-hhhccCCCCCEEEecCCCCCCCccccC----CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 777753333 378899999999999883222233433 45999999999987765 568888999999999987 4
Q ss_pred cccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCcc
Q 048083 545 MFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGK 594 (692)
Q Consensus 545 ~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 594 (692)
.++. +..+ ++|+.|+|++|.+... +.+..+++|+.|++++|.+...
T Consensus 167 ~~~~-l~~l-~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP-LAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG-GTTC-TTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred Cchh-hccC-CCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 4443 7777 8999999999998864 5688999999999998877543
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=5.4e-14 Score=142.83 Aligned_cols=204 Identities=14% Similarity=0.006 Sum_probs=141.1
Q ss_pred cceeEEEEEecCCCCCcccCCccc-cCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCCh
Q 048083 302 LFVRRLAVYLSGGVNTKLIPSSFL-DRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSD 380 (692)
Q Consensus 302 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 380 (692)
...+++.+..+. -....+..++ ..+++|++|.+.++.+.... .......+ ..+++|++|++++|.+..+++
T Consensus 91 ~~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~----~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~~ 162 (310)
T 4glp_A 91 SRLKELTLEDLK--ITGTMPPLPLEATGLALSSLRLRNVSWATGR----SWLAELQQ--WLKPGLKVLSIAQAHSPAFSC 162 (310)
T ss_dssp SCCCEEEEESCC--CBSCCCCCSSSCCCBCCSSCEEESCCCSSTT----SSHHHHHT--TBCSCCCEEEEECCSSCCCCT
T ss_pred CceeEEEeeCCE--eccchhhhhhhccCCCCCEEEeecccccchh----hhhHHHHh--hhccCCCEEEeeCCCcchhhH
Confidence 347778777433 2222333332 57899999999988743210 00122445 678899999999999987776
Q ss_pred hhhccccccceeeccCCCccc---cC--ccccCCCCCeEEecCCccceecChh----hhccccCceeeccccccccc-cc
Q 048083 381 HVIGKLLHLSYLGLRSTFIDS---LP--NSVGNLRYLETLDVKHTKLRYLPDS----IWKAKKLQHLYLNWIHSAIS-WL 450 (692)
Q Consensus 381 ~~~~~l~~L~~L~l~~~~i~~---lp--~~~~~l~~L~~L~L~~~~l~~lp~~----~~~l~~L~~L~l~~~~~~~~-~~ 450 (692)
..+..+++|++|++++|.+.. ++ ..++.+++|++|++++|+++.+|.. +..+++|++|++++|.+... |.
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 558899999999999997643 43 2346889999999999988876653 56789999999999988865 77
Q ss_pred ccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCC
Q 048083 451 NFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKA 530 (692)
Q Consensus 451 ~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 530 (692)
.++.+..++.|+.++++++....+|..+. ++|+.|++++|.++.. ..+..
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~----------------------------~~L~~L~Ls~N~l~~~--~~~~~ 292 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLEQVPKGLP----------------------------AKLRVLDLSSNRLNRA--PQPDE 292 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCCSCCSCCC----------------------------SCCSCEECCSCCCCSC--CCTTS
T ss_pred hHHhccCcCcCCEEECCCCCCCchhhhhc----------------------------CCCCEEECCCCcCCCC--chhhh
Confidence 77777545555556777774333333221 2777788888776654 22567
Q ss_pred CCCccEEEEcccc
Q 048083 531 QANLQELYLRGAL 543 (692)
Q Consensus 531 ~~~L~~L~L~~~~ 543 (692)
+++|+.|+++++.
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 7888888888764
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=3.1e-14 Score=140.57 Aligned_cols=168 Identities=18% Similarity=0.121 Sum_probs=91.2
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLY 439 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 439 (692)
..+.++..++++++.++.++ . +..+++|++|++++|.+..+| .+..+++|++|++++|.++.+|. +.++++|++|+
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~-~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLV-S-QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEE-C-HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHHhcCCCccccc-c-hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 44566666677777776665 3 667777777777777777776 46677777777777777776665 77777777777
Q ss_pred cccccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeecc
Q 048083 440 LNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAW 519 (692)
Q Consensus 440 l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 519 (692)
+++|.+..+|.... ++|+.| +++++..... ..+..+++|+.|+++++.-.....+..+ ++|+.|++++|.
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L---~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~~~l~~l----~~L~~L~L~~N~ 161 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRL---FLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVMLGFL----SKLEVLDLHGNE 161 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEE---ECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBCGGGGGC----TTCCEEECTTSC
T ss_pred CCCCccCCcCcccc--CcccEE---EccCCccCCC-hhhcCcccccEEECCCCcCCCChHHccC----CCCCEEECCCCc
Confidence 77776665443221 333333 5555532221 1344444444444443311000111112 245555555554
Q ss_pred CCccccCCCCCCCCccEEEEcccc
Q 048083 520 RDDYSDIPFKAQANLQELYLRGAL 543 (692)
Q Consensus 520 ~~~~~~~~l~~~~~L~~L~L~~~~ 543 (692)
+... ..+..+++|+.|+++++.
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEEEE
T ss_pred Ccch--HHhccCCCCCEEeCCCCc
Confidence 4333 334444445555554443
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=3.1e-13 Score=132.63 Aligned_cols=159 Identities=28% Similarity=0.325 Sum_probs=117.3
Q ss_pred cccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCC
Q 048083 318 KLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRST 397 (692)
Q Consensus 318 ~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~ 397 (692)
..+|... .+.++.|.+.++.+.. ..+..| .++++|++|+|++|.+..+++..+..+++|++|++++|
T Consensus 27 ~~~p~~~---~~~l~~L~L~~n~l~~--------~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 27 DSVPSGI---PADTEKLDLQSTGLAT--------LSDATF--RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp SSCCSCC---CTTCCEEECTTSCCCC--------CCTTTT--TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cccCCCC---CCCCCEEEccCCCcCc--------cCHhHh--cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3445444 3678888888877322 345567 88899999999999888777766888899999999999
Q ss_pred CccccCc-cccCCCCCeEEecCCccceecChh-hhccccCceeeccccccccccc-ccCCCcccccccccccCCCccccc
Q 048083 398 FIDSLPN-SVGNLRYLETLDVKHTKLRYLPDS-IWKAKKLQHLYLNWIHSAISWL-NFSSLNNLQTLWGLSMGDDSLFNQ 474 (692)
Q Consensus 398 ~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~~~~~~ 474 (692)
.+..+|. .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..+|. .++.+++|+.| +++++....+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L---~L~~N~l~~~ 170 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL---SLSTNQLQSV 170 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE---ECCSSCCSCC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE---ECCCCcCCcc
Confidence 8888874 467889999999999988887754 6788999999999988887665 45566665555 7777754444
Q ss_pred cc-cccccccccccccccc
Q 048083 475 TF-DFTKLASLRKLGVKCY 492 (692)
Q Consensus 475 ~~-~l~~l~~L~~L~l~~~ 492 (692)
+. .+..+++|+.|++.++
T Consensus 171 ~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CTTTTTTCTTCCEEECCSC
T ss_pred CHHHHhCCCCCCEEEeeCC
Confidence 33 4666676776666655
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1.9e-13 Score=134.85 Aligned_cols=170 Identities=18% Similarity=0.169 Sum_probs=127.8
Q ss_pred cccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCccccccccc
Q 048083 385 KLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGL 464 (692)
Q Consensus 385 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~ 464 (692)
.+.++..++++++.+..++ .+..+++|++|++++|.++.+| .+..+++|++|++++|.+..++. +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L--- 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEEL--- 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEE---
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEE---
Confidence 5677888899999998888 5888999999999999999988 78999999999999998887765 5555555555
Q ss_pred ccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-
Q 048083 465 SMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL- 543 (692)
Q Consensus 465 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~- 543 (692)
+++++.... ++.+.. ++|+.|++++|.++.. ..+..+++|+.|+++++.
T Consensus 91 ~L~~N~l~~-------l~~~~~---------------------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 91 SVNRNRLKN-------LNGIPS---------------------ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp ECCSSCCSC-------CTTCCC---------------------SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccCC-------cCcccc---------------------CcccEEEccCCccCCC--hhhcCcccccEEECCCCcC
Confidence 676663222 111100 2788888888866654 347778888888888876
Q ss_pred ccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCcc
Q 048083 544 RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGK 594 (692)
Q Consensus 544 ~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 594 (692)
..++ .+..+ ++|+.|++++|.+... ..+..+++|+.|++++|.+...
T Consensus 141 ~~~~-~l~~l-~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 141 KSIV-MLGFL-SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBCG-GGGGC-TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCh-HHccC-CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 5555 56667 8888888888888765 5677888888888887776543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=4.7e-13 Score=145.68 Aligned_cols=177 Identities=14% Similarity=0.079 Sum_probs=135.1
Q ss_pred ccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccccccCCCcccccccccccC
Q 048083 388 HLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMG 467 (692)
Q Consensus 388 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~ 467 (692)
+|+.|++++|.+..+|..+ +++|++|++++|+++.+| ..+++|++|++++|.+..+|. ++. +|+ .++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~---~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLK---HLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCC---EEECC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCC---EEECC
Confidence 9999999999999999876 489999999999999999 558999999999999888776 544 444 44777
Q ss_pred CCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccc
Q 048083 468 DDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMF 546 (692)
Q Consensus 468 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~ 546 (692)
++....+|. . +++|+.|++++|.++.... .+++|+.|++++|. ..+
T Consensus 129 ~N~l~~lp~---~--------------------------l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~l 175 (571)
T 3cvr_A 129 NNQLTMLPE---L--------------------------PALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFL 175 (571)
T ss_dssp SSCCSCCCC---C--------------------------CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC
T ss_pred CCcCCCCCC---c--------------------------CccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCc
Confidence 763222221 1 1288888888887766432 56899999999988 667
Q ss_pred cccccCccCccceeeeeccCCCCCchhhhhcCCCC-------CeeeecCCccCccEEEEecCCCCcccEEEeccCCCCc
Q 048083 547 SAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHL-------NILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLE 618 (692)
Q Consensus 547 p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 618 (692)
|. +. ++|+.|+|++|.++..+. +.. +| +.|++++|.+.. ++.....+++|+.|+|++++--.
T Consensus 176 p~-l~---~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 176 PE-LP---ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CC-CC---TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCH
T ss_pred ch-hh---CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCC
Confidence 76 33 899999999999985443 443 66 999999998863 45555669999999999876333
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=1.1e-12 Score=136.21 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=62.1
Q ss_pred EEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc-cc-CCCCCeEEecCCccceecC-hhhhccccCceeeccc
Q 048083 366 TVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS-VG-NLRYLETLDVKHTKLRYLP-DSIWKAKKLQHLYLNW 442 (692)
Q Consensus 366 ~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~-~~-~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~ 442 (692)
++++++++.++.+|.. +. ..+++|+|++|.+..++.. +. ++++|++|+|++|+++.++ ..+.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~-~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSS-CC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCcc-CC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4678888888888876 43 3578888888888887754 44 7888888888888888776 4688888888888888
Q ss_pred ccccccc
Q 048083 443 IHSAISW 449 (692)
Q Consensus 443 ~~~~~~~ 449 (692)
|.+..++
T Consensus 98 N~l~~~~ 104 (361)
T 2xot_A 98 NHLHTLD 104 (361)
T ss_dssp SCCCEEC
T ss_pred CcCCcCC
Confidence 8765443
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=7.5e-13 Score=124.57 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=118.7
Q ss_pred CcceEEeeeccCCccccCCCCCCCCccEEEEccccccccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecC
Q 048083 509 RLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALRMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIG 588 (692)
Q Consensus 509 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~ 588 (692)
+|+.|++++|.+.... .+..+++|++|+++++....+..+..+ ++|++|++++|.+....+..+..+++|+.|++++
T Consensus 45 ~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 45 SLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYNPISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp TCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCGGGTTC-TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcchhhhcC-CCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 8999999998777443 678889999999998873334467777 8999999999998876677788999999999998
Q ss_pred CccCccEEEEecCCCCcccEEEeccCCCCcEEEecCCCccccceeecccccccC-CCcChhhhhccCcEEEEecCc
Q 048083 589 EAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQEAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDIVLTNMP 663 (692)
Q Consensus 589 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L~i~~c~ 663 (692)
|.+.+.. +.....+++|+.|++++|..+..++ ....+++|+.|++++|. ++ ++ .+..+++ |+.|++.+++
T Consensus 122 n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~-L~~L~l~~N~ 192 (197)
T 4ezg_A 122 SAHDDSI-LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPK-LNQLYAFSQT 192 (197)
T ss_dssp SBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSS-CCEEEECBC-
T ss_pred CccCcHh-HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCC-CCEEEeeCcc
Confidence 8876532 2345688999999999876677776 56778999999999975 56 66 7889999 9999999876
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=1.5e-12 Score=123.75 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=38.1
Q ss_pred CcceEEeeeccCCccccCCCCCCCCccEEEEccccccccccccCccCccceeeeeccCCCCCchhhhhcCC
Q 048083 509 RLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALRMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLC 579 (692)
Q Consensus 509 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~ 579 (692)
+|+.|++++|.+.......+..+++|+.|+++++. +.+.. ++|+.|++..|.+++..+..++.++
T Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-----~~~~~-~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-----WDCTC-PGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-----BCCCT-TTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cCCEEECCCCccceeCHHHhccCCCccEEEecCCC-----eecCC-CCHHHHHHHHHhCCceeeccCcccc
Confidence 55556666665555444456666677777776652 22334 5677777777766665555555444
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=2.8e-13 Score=127.49 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=57.1
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccc-cCcc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDS-LPNS 405 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~-lp~~ 405 (692)
++++|+.|.+.++.+.. ++ .+ ..+++|++|++++|.+..++ . +..+++|++|++++|.+.. .|..
T Consensus 42 ~l~~L~~L~l~~n~i~~---------l~-~l--~~l~~L~~L~l~~n~~~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD---------LT-GI--EYAHNIKDLTINNIHATNYN-P-ISGLSNLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp HHHTCCEEEEESSCCSC---------CT-TG--GGCTTCSEEEEESCCCSCCG-G-GTTCTTCCEEEEECTTCBGGGSCC
T ss_pred hcCCccEEeccCCCccC---------hH-HH--hcCCCCCEEEccCCCCCcch-h-hhcCCCCCEEEeECCccCcccChh
Confidence 45566666666554211 11 24 55566666666666554333 3 5556666666666665543 3445
Q ss_pred ccCCCCCeEEecCCcccee-cChhhhccccCceeeccccc
Q 048083 406 VGNLRYLETLDVKHTKLRY-LPDSIWKAKKLQHLYLNWIH 444 (692)
Q Consensus 406 ~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~l~~~~ 444 (692)
++.+++|++|++++|.++. .|..+..+++|++|++++|.
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 5566666666666665552 44555566666666666554
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=2.4e-14 Score=156.79 Aligned_cols=211 Identities=20% Similarity=0.157 Sum_probs=102.6
Q ss_pred cCCCCCeEEecCCccceecChhhhccccCceeeccccccc-ccccccCCCcccccccccccCCCcccccccccccccccc
Q 048083 407 GNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSA-ISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLR 485 (692)
Q Consensus 407 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~-~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~ 485 (692)
..+++|+.|+|++|.++.+|..++++++|+.|++++|... ..|.. +..+ +. ....|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l------l~~~---~~----~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL------MRAL---DP----LLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HHHH---CT----GGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHH------HHhc---cc----ccCCHHHHHHHHhcc
Confidence 4566777777777777777777777777777777554311 11100 0000 00 111223456666666
Q ss_pred ccc-ccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeee
Q 048083 486 KLG-VKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLS 563 (692)
Q Consensus 486 ~L~-l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~ 563 (692)
.|+ ++.+. +. +|..+.+++|.+..... ..|+.|+++++. ..+|. +..+ ++|+.|+|+
T Consensus 413 ~L~~l~~n~---------~~----~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~-~~~l-~~L~~L~Ls 471 (567)
T 1dce_A 413 AVDPMRAAY---------LD----DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH-LEQL-LLVTHLDLS 471 (567)
T ss_dssp HHCGGGHHH---------HH----HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC-GGGG-TTCCEEECC
T ss_pred cCcchhhcc---------cc----hhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC-cccc-ccCcEeecC
Confidence 666 33220 00 11111122221111000 124444444443 33443 4444 555555555
Q ss_pred ccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEE--EecCCCccccceeeccccccc
Q 048083 564 MSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEW--TVQEAAMPRLRELEIRSCNKL 641 (692)
Q Consensus 564 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l 641 (692)
+|.++. .+..++.+++|+.|++++|.+.+ ++ .++.+++|+.|+|+++ .++.+ |...+.+++|+.|++++|+ +
T Consensus 472 ~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l 545 (567)
T 1dce_A 472 HNRLRA-LPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-L 545 (567)
T ss_dssp SSCCCC-CCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-G
T ss_pred cccccc-cchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-C
Confidence 555552 23345555555555555555543 22 4455566666666553 34444 4455566777777777754 4
Q ss_pred C-CCcCh----hhhhccCcEEE
Q 048083 642 K-PPEGL----RNLAATLKDIV 658 (692)
Q Consensus 642 ~-~p~~~----~~l~~sL~~L~ 658 (692)
+ +|... ..+|+ |+.|+
T Consensus 546 ~~~~~~~~~l~~~lp~-L~~L~ 566 (567)
T 1dce_A 546 CQEEGIQERLAEMLPS-VSSIL 566 (567)
T ss_dssp GGSSSCTTHHHHHCTT-CSEEE
T ss_pred CCCccHHHHHHHHCcc-cCccC
Confidence 4 44322 33566 77764
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=6.1e-13 Score=126.45 Aligned_cols=87 Identities=33% Similarity=0.416 Sum_probs=45.5
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc-ccCCCCCeEEecCCccceecChh-hhccccCce
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS-VGNLRYLETLDVKHTKLRYLPDS-IWKAKKLQH 437 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~ 437 (692)
..+++|++|++++|.++.++...+..+++|++|++++|.+..+|.. +.++++|++|++++|.++.+|.. +.++++|++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 5555555555555555555544345555555555555555555432 34555555555555555544432 445555555
Q ss_pred eeccccccc
Q 048083 438 LYLNWIHSA 446 (692)
Q Consensus 438 L~l~~~~~~ 446 (692)
|++++|.+.
T Consensus 129 L~l~~N~l~ 137 (208)
T 2o6s_A 129 LRLYQNQLK 137 (208)
T ss_dssp EECCSSCCS
T ss_pred EECCCCccc
Confidence 555555443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=6.3e-12 Score=121.21 Aligned_cols=76 Identities=21% Similarity=0.168 Sum_probs=44.0
Q ss_pred EEeecCCCCCCCChhhhccccccceeeccCCCcccc-CccccCCCCCeEEecCCccceecCh-hhhccccCceeeccccc
Q 048083 367 VLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSL-PNSVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIH 444 (692)
Q Consensus 367 ~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 444 (692)
.++.+++.+..+|.. +. ++|++|++++|.+..+ |..+.++++|++|+|++|.++.+|. .+..+++|++|++++|.
T Consensus 23 ~v~c~~~~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAG-IP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCSSCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcCccCCC-CC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456666666666654 32 5666666666666555 3445566666666666666665553 34555666666665554
Q ss_pred c
Q 048083 445 S 445 (692)
Q Consensus 445 ~ 445 (692)
+
T Consensus 100 l 100 (229)
T 3e6j_A 100 L 100 (229)
T ss_dssp C
T ss_pred C
Confidence 3
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=2e-14 Score=157.44 Aligned_cols=196 Identities=13% Similarity=0.058 Sum_probs=121.2
Q ss_pred ccccccceeeccCCCccccCccccCCCCCeEEecCCcc-------------ce-ecChhhhccccCceee-ccccccccc
Q 048083 384 GKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTK-------------LR-YLPDSIWKAKKLQHLY-LNWIHSAIS 448 (692)
Q Consensus 384 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~-------------l~-~lp~~~~~l~~L~~L~-l~~~~~~~~ 448 (692)
..+++|+.|+|++|.+..+|..+++|++|+.|++++|. .. ..|..++.+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45667777777777777777777777777777776552 22 3456677788888887 555533222
Q ss_pred cc------ccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCc
Q 048083 449 WL------NFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDD 522 (692)
Q Consensus 449 ~~------~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 522 (692)
+. .+..+.. ..|..++++++....+|. ++.++ +|+.|++++|.++.
T Consensus 426 ~~l~l~~n~i~~l~~-~~L~~L~Ls~n~l~~lp~-~~~l~--------------------------~L~~L~Ls~N~l~~ 477 (567)
T 1dce_A 426 RSKFLLENSVLKMEY-ADVRVLHLAHKDLTVLCH-LEQLL--------------------------LVTHLDLSHNRLRA 477 (567)
T ss_dssp HHHHHHHHHHHHHHH-TTCSEEECTTSCCSSCCC-GGGGT--------------------------TCCEEECCSSCCCC
T ss_pred hhhhhhcccccccCc-cCceEEEecCCCCCCCcC-ccccc--------------------------cCcEeecCcccccc
Confidence 11 1111110 023444676664333322 33333 66667777766653
Q ss_pred cccCCCCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCc-hhhhhcCCCCCeeeecCCccCccEEEE--
Q 048083 523 YSDIPFKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDP-MEALEKLCHLNILRIIGEAYEGKKMTC-- 598 (692)
Q Consensus 523 ~~~~~l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-- 598 (692)
.+..+..+++|+.|+|+++. ..+| .+..+ ++|+.|+|++|.++... +..++.+++|+.|++++|.+.+.....
T Consensus 478 -lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l-~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 478 -LPPALAALRCLEVLQASDNALENVD-GVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp -CCGGGGGCTTCCEEECCSSCCCCCG-GGTTC-SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred -cchhhhcCCCCCEEECCCCCCCCCc-ccCCC-CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 34567777788888888776 5566 67777 88888888888887765 677888888888888888776432110
Q ss_pred ecCCCCcccEEE
Q 048083 599 QAGGFPQLRVLK 610 (692)
Q Consensus 599 ~~~~~~~L~~L~ 610 (692)
....+|+|+.|+
T Consensus 555 l~~~lp~L~~L~ 566 (567)
T 1dce_A 555 LAEMLPSVSSIL 566 (567)
T ss_dssp HHHHCTTCSEEE
T ss_pred HHHHCcccCccC
Confidence 112367777775
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=5.2e-12 Score=120.89 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=61.1
Q ss_pred EEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceec-ChhhhccccCceeecccc
Q 048083 366 TVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLNWI 443 (692)
Q Consensus 366 ~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~ 443 (692)
+.++++++.++.+|.. +. .+|+.|++++|.+..+|. .+..+++|++|+|++|.++.+ |..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~-l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCc-cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4677788888877776 43 678888888888877765 577788888888888888765 667888888888888887
Q ss_pred cccccc
Q 048083 444 HSAISW 449 (692)
Q Consensus 444 ~~~~~~ 449 (692)
.+..+|
T Consensus 91 ~l~~l~ 96 (220)
T 2v9t_B 91 KITELP 96 (220)
T ss_dssp CCCCCC
T ss_pred cCCccC
Confidence 665444
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=2.4e-12 Score=117.68 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=78.2
Q ss_pred CCcceEEEEeecCCCCC--CCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCcccee-cChhhhccccCc
Q 048083 360 RGLVLLTVLDLEGVYKP--KLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRY-LPDSIWKAKKLQ 436 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~--~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~ 436 (692)
...++|++|++++|.+. .+|.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 45577888888888887 77776 78888888888888888777 667888888888888888886 677777788888
Q ss_pred eeecccccccccc--cccCCCcccccccccccCCCc
Q 048083 437 HLYLNWIHSAISW--LNFSSLNNLQTLWGLSMGDDS 470 (692)
Q Consensus 437 ~L~l~~~~~~~~~--~~i~~l~~L~~L~~~~~~~~~ 470 (692)
+|++++|.+..+| ..+..+++|+.| +++++.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L---~l~~N~ 131 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSL---DLFNCE 131 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEE---ECCSSG
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEE---EeeCCc
Confidence 8888888776544 344444444333 555553
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=1e-11 Score=118.93 Aligned_cols=148 Identities=16% Similarity=0.191 Sum_probs=98.9
Q ss_pred cceeeccCCCccccCccccCCCCCeEEecCCccceecCh-hhhccccCceeeccccccccc-ccccCCCccccccccccc
Q 048083 389 LSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHSAIS-WLNFSSLNNLQTLWGLSM 466 (692)
Q Consensus 389 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~-~~~i~~l~~L~~L~~~~~ 466 (692)
-+.++++++.+..+|..+. ++|+.|++++|.++.+|. .+..+++|++|++++|.+..+ |..+..++
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~---------- 80 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR---------- 80 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence 3678889999999997664 689999999999998765 688899999999998876543 22232222
Q ss_pred CCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccc-c-
Q 048083 467 GDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-R- 544 (692)
Q Consensus 467 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~- 544 (692)
+|+.|++++|.++......+..+++|+.|+|+++. .
T Consensus 81 ------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 81 ------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp ------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 44444444444444444445555666666666554 2
Q ss_pred cccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCcc
Q 048083 545 MFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAY 591 (692)
Q Consensus 545 ~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 591 (692)
..|..+..+ ++|+.|+|++|.++......+..+++|+.|++++|.+
T Consensus 119 ~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 119 LRVDAFQDL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred eCHHHcCCC-CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 224455566 6777777777777766666667777777777776654
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=9.2e-12 Score=119.18 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=88.6
Q ss_pred EEEeecCCCCCCCChhhhccccccceeeccCCCccccCc--cccCCCCCeEEecCCccceecCh-hhhccccCceeeccc
Q 048083 366 TVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN--SVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNW 442 (692)
Q Consensus 366 ~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~ 442 (692)
+.++++++.++.+|.. +. ..+++|++++|.+..+++ .+.++++|++|++++|.++.++. .+.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~-~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSC-CC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccC-CC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3677777777777765 33 345677777777777642 36777777777777777776654 577777777777777
Q ss_pred ccccccccccCCCcccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCc
Q 048083 443 IHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDD 522 (692)
Q Consensus 443 ~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 522 (692)
|.+..++.. .+..++ +|++|++++|.+..
T Consensus 91 N~l~~~~~~-------------------------~~~~l~--------------------------~L~~L~Ls~N~l~~ 119 (220)
T 2v70_A 91 NRLENVQHK-------------------------MFKGLE--------------------------SLKTLMLRSNRITC 119 (220)
T ss_dssp SCCCCCCGG-------------------------GGTTCS--------------------------SCCEEECTTSCCCC
T ss_pred CccCccCHh-------------------------HhcCCc--------------------------CCCEEECCCCcCCe
Confidence 654332211 122222 55566666665555
Q ss_pred cccCCCCCCCCccEEEEcccc-ccc-cccccCccCccceeeeeccCCC
Q 048083 523 YSDIPFKAQANLQELYLRGAL-RMF-SAKTSSFPRNLKIVTLSMSRLY 568 (692)
Q Consensus 523 ~~~~~l~~~~~L~~L~L~~~~-~~~-p~~~~~l~~~L~~L~L~~~~l~ 568 (692)
..+..+..+++|+.|+|+++. ..+ |..+..+ ++|+.|+|++|.+.
T Consensus 120 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL-HSLSTLNLLANPFN 166 (220)
T ss_dssp BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC-TTCCEEECCSCCEE
T ss_pred ECHhHcCCCccCCEEECCCCcCCEECHHHhcCC-CCCCEEEecCcCCc
Confidence 555555556666666666554 222 4444455 55555555555543
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=8.4e-12 Score=119.45 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=45.0
Q ss_pred CcceEEeeeccCCccccCCCCCCCCccEEEEcccc-c-cccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeee
Q 048083 509 RLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGAL-R-MFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRI 586 (692)
Q Consensus 509 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~-~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l 586 (692)
+|+.|++++|.++......+..+++|++|+++++. . ..|..+..+ ++|+.|+|++|.++...+..+..+++|+.|++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 44444444444444444445555666666666554 2 224445555 56666666666665554555566666666666
Q ss_pred cCCcc
Q 048083 587 IGEAY 591 (692)
Q Consensus 587 ~~~~~ 591 (692)
++|.+
T Consensus 161 ~~N~l 165 (220)
T 2v70_A 161 LANPF 165 (220)
T ss_dssp CSCCE
T ss_pred cCcCC
Confidence 65554
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=5.4e-12 Score=121.68 Aligned_cols=136 Identities=23% Similarity=0.229 Sum_probs=99.0
Q ss_pred cccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCC
Q 048083 318 KLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRST 397 (692)
Q Consensus 318 ~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~ 397 (692)
..+|... .++|+.|.+.++.+.. ..+..| ..+++|++|+|++|.+..++...+..+++|++|+|++|
T Consensus 32 ~~ip~~~---~~~L~~L~Ls~n~i~~--------~~~~~~--~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 32 ASVPAGI---PTNAQILYLHDNQITK--------LEPGVF--DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCCC--------CCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCCCC---CCCCCEEEcCCCccCc--------cCHHHh--hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3444444 4778888888877322 345667 78888888888888888887765788888888888888
Q ss_pred CccccCcc-ccCCCCCeEEecCCccceecChhhhccccCceeeccccccccccc-ccCCCcccccccccccCCC
Q 048083 398 FIDSLPNS-VGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISWL-NFSSLNNLQTLWGLSMGDD 469 (692)
Q Consensus 398 ~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~i~~l~~L~~L~~~~~~~~ 469 (692)
.+..+|.. +..+++|++|++++|.++.+|..+..+++|++|++++|.+..++. .+..+++|+.| ++.++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L---~l~~N 169 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA---YLFGN 169 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE---ECTTS
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE---EeeCC
Confidence 88887754 577888888888888888888888888888888888887776654 23444444433 55554
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=2.2e-12 Score=115.39 Aligned_cols=126 Identities=21% Similarity=0.152 Sum_probs=86.2
Q ss_pred CCcceEEEEeecCCCCC--CCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCcccee-cChhhhccccCc
Q 048083 360 RGLVLLTVLDLEGVYKP--KLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRY-LPDSIWKAKKLQ 436 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~--~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~ 436 (692)
...++|+.|++++|.+. .+|.. +..+++|++|++++|.+..+ ..++++++|++|++++|.++. +|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 45677888888888877 66665 77888888888888877777 557778888888888888776 666677788888
Q ss_pred eeecccccccccc--cccCCCcccccccccccCCCccccccc----cccccccccccccc
Q 048083 437 HLYLNWIHSAISW--LNFSSLNNLQTLWGLSMGDDSLFNQTF----DFTKLASLRKLGVK 490 (692)
Q Consensus 437 ~L~l~~~~~~~~~--~~i~~l~~L~~L~~~~~~~~~~~~~~~----~l~~l~~L~~L~l~ 490 (692)
+|++++|.+..++ ..++.+++|+.| +++++.....|. .+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L---~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSL---DLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEE---ECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEE---eCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888776543 445555554444 555554333322 35555666655553
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=2.9e-12 Score=117.14 Aligned_cols=123 Identities=22% Similarity=0.151 Sum_probs=66.3
Q ss_pred CcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccc-cCccc
Q 048083 328 SCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDS-LPNSV 406 (692)
Q Consensus 328 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~-lp~~~ 406 (692)
.++++.|.+.++.+... .++..| ..+++|++|++++|.++.+ .. +..+++|++|++++|.+.. +|..+
T Consensus 23 ~~~L~~L~l~~n~l~~~-------~i~~~~--~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDG-------KIEGLT--AEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp TTSCSEEECCSCBCBTT-------BCSSCC--GGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred cccCCEEECCCCCCChh-------hHHHHH--HhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCCcCchHHHHHH
Confidence 34555666555542100 123334 5566666666666665555 33 5566666666666666555 44444
Q ss_pred cCCCCCeEEecCCccceecC--hhhhccccCceeeccccccccccc----ccCCCcccccc
Q 048083 407 GNLRYLETLDVKHTKLRYLP--DSIWKAKKLQHLYLNWIHSAISWL----NFSSLNNLQTL 461 (692)
Q Consensus 407 ~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~----~i~~l~~L~~L 461 (692)
.++++|++|++++|.++.+| ..+..+++|++|++++|.+...|. .+..+++|+.|
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 45666666666666666554 455566666666666665554443 34444444444
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=7e-12 Score=115.50 Aligned_cols=127 Identities=21% Similarity=0.227 Sum_probs=90.2
Q ss_pred CCcceEEEEeecCCCCCCCChhhhcccc-ccceeeccCCCccccCccccCCCCCeEEecCCccceecChhh-hccccCce
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLL-HLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSI-WKAKKLQH 437 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~~ 437 (692)
..+.+|+.|++++|.++.++. +..+. +|++|++++|.+..+ ..++.+++|++|++++|.++.+|..+ ..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 677888888998888887754 55554 889999988888887 56888888999999888888887554 88888999
Q ss_pred eeccccccccccc--ccCCCcccccccccccCCCcccccccc----ccccccccccccccc
Q 048083 438 LYLNWIHSAISWL--NFSSLNNLQTLWGLSMGDDSLFNQTFD----FTKLASLRKLGVKCY 492 (692)
Q Consensus 438 L~l~~~~~~~~~~--~i~~l~~L~~L~~~~~~~~~~~~~~~~----l~~l~~L~~L~l~~~ 492 (692)
|++++|.+..+|. .+..+++|+.| +++++.....|.. +..+++|+.|+++.+
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L---~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYL---CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEE---ECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEE---EecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9998888776654 44444444444 6666643333332 555566666666544
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=1e-12 Score=148.49 Aligned_cols=114 Identities=26% Similarity=0.276 Sum_probs=94.2
Q ss_pred HHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhc
Q 048083 352 FLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWK 431 (692)
Q Consensus 352 ~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~ 431 (692)
..+..| ..++.|++|+|++|.+..+|.. +..+++|++|+|++|.+..+|..+++|++|++|+|++|.|+.+|..+++
T Consensus 215 ~~~~~~--~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSK--YDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp ---------CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred cChhhh--ccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 456778 8899999999999999989888 7789999999999999999998899999999999999999999999999
Q ss_pred cccCceeecccccccccccccCCCcccccccccccCCCcc
Q 048083 432 AKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSL 471 (692)
Q Consensus 432 l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~ 471 (692)
|++|++|+|++|.+..+|..++.+++|+.| +++++..
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L---~L~~N~l 328 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFL---GVEGNPL 328 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCE---ECTTSCC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEE---eCCCCcc
Confidence 999999999999888888877777776666 6777653
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=1e-11 Score=127.02 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=53.2
Q ss_pred CcccceEEEecCccccCcchhhhhHHHhhhccCC-cceEEEEeecCCCCC--CCChhhhccccccceeeccCCCccccC-
Q 048083 328 SCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRG-LVLLTVLDLEGVYKP--KLSDHVIGKLLHLSYLGLRSTFIDSLP- 403 (692)
Q Consensus 328 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~--~l~~~~~~~l~~L~~L~l~~~~i~~lp- 403 (692)
..+++.|.+.+.- ....-..+ +. +++|++|||++|.+. ..... .+..++++.+..+. +|
T Consensus 24 ~~~l~~L~l~g~i---------~~~~~~~l--~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~ 86 (329)
T 3sb4_A 24 ANSITHLTLTGKL---------NAEDFRHL--RDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPA 86 (329)
T ss_dssp HHHCSEEEEEEEE---------CHHHHHHH--HHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECT
T ss_pred hCceeEEEEeccc---------cHHHHHHH--HHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCH
Confidence 5677888887643 00111223 33 788999999998877 22211 12223333333332 22
Q ss_pred ccccC--------CCCCeEEecCCccceecCh-hhhccccCceeeccccccccc
Q 048083 404 NSVGN--------LRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHSAIS 448 (692)
Q Consensus 404 ~~~~~--------l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~ 448 (692)
..|.+ |.+|+.|+|.+ +++.++. .+.+|++|+.++++.+....+
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i 139 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL 139 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE
T ss_pred HHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc
Confidence 22344 66666666655 5555543 455566666666665554433
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=5.7e-12 Score=142.46 Aligned_cols=160 Identities=15% Similarity=0.051 Sum_probs=111.1
Q ss_pred ecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceeecccccccccc
Q 048083 370 LEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLYLNWIHSAISW 449 (692)
Q Consensus 370 L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~ 449 (692)
+..+.+...+.. +..+..|+.|+|++|.+..+|..+.++++|++|+|++|.++.+|..++++++|++|+|++|.+..+|
T Consensus 208 ~~~n~~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 286 (727)
T 4b8c_D 208 DIENRMVMPKDS-KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCC
T ss_pred ccccceecChhh-hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccC
Confidence 333444433444 8999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccccccCCCccccccccccccccccccccccc--chhhHHHHHHHhhccCCcceEEeeeccCCccccCC
Q 048083 450 LNFSSLNNLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCY--SQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIP 527 (692)
Q Consensus 450 ~~i~~l~~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 527 (692)
..++.+++|+.| +++++....+|..++.+++|+.|+++++ ....+..+.... ..+..|++++|......+
T Consensus 287 ~~~~~l~~L~~L---~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~---~~~~~l~l~~N~l~~~~p-- 358 (727)
T 4b8c_D 287 AELGSCFQLKYF---YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS---VTGLIFYLRDNRPEIPLP-- 358 (727)
T ss_dssp SSGGGGTTCSEE---ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH---HHHHHHHHHHCCCCCCCC--
T ss_pred hhhcCCCCCCEE---ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcc---hhhhHHhhccCcccCcCc--
Confidence 988888877777 7888876677888999999999999988 334444444332 022235666665543322
Q ss_pred CCCCCCccEEEEccc
Q 048083 528 FKAQANLQELYLRGA 542 (692)
Q Consensus 528 l~~~~~L~~L~L~~~ 542 (692)
..|+.|+++.+
T Consensus 359 ----~~l~~l~l~~n 369 (727)
T 4b8c_D 359 ----HERRFIEINTD 369 (727)
T ss_dssp ----CC---------
T ss_pred ----cccceeEeecc
Confidence 34555555543
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=1.2e-11 Score=128.24 Aligned_cols=162 Identities=20% Similarity=0.175 Sum_probs=116.7
Q ss_pred cccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccC-CcceEEEEeecCCCCCCCChhhhccccccceeeccC
Q 048083 318 KLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNR-GLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRS 396 (692)
Q Consensus 318 ~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~ 396 (692)
..+|..+ .+.++.|.+.++.+.. ..+..| . .+++|+.|+|++|.+..+++..|..+++|++|+|++
T Consensus 31 ~~iP~~~---~~~l~~L~Ls~N~l~~--------l~~~~~--~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 31 PNVPQSL---PSYTALLDLSHNNLSR--------LRAEWT--PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp SSCCSSC---CTTCSEEECCSSCCCE--------ECTTSS--SSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CccCccC---CCCCCEEECCCCCCCc--------cChhhh--hhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3345544 3568888888887322 345556 6 889999999999999888766688999999999999
Q ss_pred CCccccCc-cccCCCCCeEEecCCccceec-ChhhhccccCceeecccccccccccccC-CCcccccccccccCCCcccc
Q 048083 397 TFIDSLPN-SVGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLNWIHSAISWLNFS-SLNNLQTLWGLSMGDDSLFN 473 (692)
Q Consensus 397 ~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~i~-~l~~L~~L~~~~~~~~~~~~ 473 (692)
|.+..+|. .+.++++|++|+|++|.++.+ |..+..+++|++|++++|.+..+|..+. .+..+..|..++++++....
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99988875 578899999999999988866 5678889999999999998887776542 22334444445777776444
Q ss_pred ccc-ccccccc--ccccccccc
Q 048083 474 QTF-DFTKLAS--LRKLGVKCY 492 (692)
Q Consensus 474 ~~~-~l~~l~~--L~~L~l~~~ 492 (692)
+|. .+..+++ ++.|++.++
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSS
T ss_pred cCHHHhhhccHhhcceEEecCC
Confidence 442 3555555 366777665
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=4e-12 Score=113.62 Aligned_cols=124 Identities=19% Similarity=0.144 Sum_probs=96.7
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccc-cCcc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDS-LPNS 405 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~-lp~~ 405 (692)
..++++.|.+.++.+.. ..++..+ ..+++|++|++++|.++.+ .. +..+++|++|++++|.+.. +|..
T Consensus 15 ~~~~l~~L~l~~n~l~~-------~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNE-------GKLEGLT--DEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTCBCBT-------TBCCSCC--TTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CCccCeEEEccCCcCCh-------hHHHHHH--hhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCCcccchHHHH
Confidence 35778888888876321 1245567 7889999999999988877 44 8889999999999998877 7776
Q ss_pred ccCCCCCeEEecCCccceecC--hhhhccccCceeeccccccccccc----ccCCCcccccc
Q 048083 406 VGNLRYLETLDVKHTKLRYLP--DSIWKAKKLQHLYLNWIHSAISWL----NFSSLNNLQTL 461 (692)
Q Consensus 406 ~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~----~i~~l~~L~~L 461 (692)
++++++|++|++++|.++.+| ..+..+++|++|++++|.+...+. .+..+++|+.|
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 777899999999999888765 678889999999999998876665 46666776666
No 131
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.20 E-value=9.6e-11 Score=124.03 Aligned_cols=245 Identities=17% Similarity=0.196 Sum_probs=151.5
Q ss_pred eEEEE--EcCCCCcHHHHHHHHHcccchhhc-----cc-ccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHH
Q 048083 4 QIIAI--LGERGSGKTTLARTVYDRVDVKRH-----FA-KRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVS 75 (692)
Q Consensus 4 ~vv~I--~G~gGiGKTtLa~~~~~~~~~~~~-----F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 75 (692)
+.+.| +|++|+||||||++++++ .... |. .++|+++....+...++..+++.+...... ...+..+...
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~ 127 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQV-RGAPALDILK 127 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCC-TTCCHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHH
Confidence 45666 999999999999999988 4432 22 256777666667888888888887543221 1233455666
Q ss_pred HHHHHhc--cccEEEEEeCCCCcc--------ccccc-----CCC-----Cc------cc-----------------ccC
Q 048083 76 SLTTLLK--EISYLIVVEDVETPQ--------VCNPN-----NIP-----PE------AE-----------------AAG 112 (692)
Q Consensus 76 ~l~~~L~--~k~~LlVLDdv~~~~--------~~~~~-----~~~-----~~------~~-----------------~~~ 112 (692)
.+.+.+. +++++|||||++... .+..+ ..+ .. .. ...
T Consensus 128 ~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~ 207 (412)
T 1w5s_A 128 ALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIG 207 (412)
T ss_dssp HHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS
T ss_pred HHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcC
Confidence 6777665 679999999998732 11111 122 12 00 011
Q ss_pred CccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhC------CCchHHHHHhhh-h-----cCC
Q 048083 113 PTLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICG------GLPLHISLLGGL-L-----STK 180 (692)
Q Consensus 113 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------glPLal~~~g~~-l-----~~~ 180 (692)
..+++++++.+++.++|...+... + ....--.+....|++.++ |.|..+..++.. . .+.
T Consensus 208 ~~i~l~~l~~~e~~~ll~~~~~~~---~------~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~ 278 (412)
T 1w5s_A 208 FKLHLPAYKSRELYTILEQRAELG---L------RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGR 278 (412)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHH---B------CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CeeeeCCCCHHHHHHHHHHHHHhc---C------CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 126899999999999997654211 1 000112456788899999 999655444322 1 111
Q ss_pred ---ChHHHHHHHHHhc-C---CCCCCCCCccchhHHhhhcCCC--CCCccchhhHHHHHH--h---cCCCCCchHHHHHH
Q 048083 181 ---EAKYWSKVIEHAD-N---SRSGSGTGSGLKPFFLYVGMFP--RGFEIPVRRLIHLWC--A---EGFAAPIDTDLAEM 246 (692)
Q Consensus 181 ---~~~~w~~~l~~l~-~---~~s~~~L~~~~k~~fl~~a~f~--~~~~i~~~~l~~~w~--~---~g~~~~~~~~~~~~ 246 (692)
..+.+..++.... . ...+..+++..+.++..+|.+. .+..++...+...+. + .|. .+........
T Consensus 279 ~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 357 (412)
T 1w5s_A 279 DSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRGYTQYHI 357 (412)
T ss_dssp SSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCCHHHHHH
Confidence 1455666665553 2 4567789999999999888754 223444444443332 1 121 1123456778
Q ss_pred HHHHHHhccceeeee
Q 048083 247 YFEELVIRNLIQVTK 261 (692)
Q Consensus 247 ~~~~L~~~sLi~~~~ 261 (692)
+++.|++.++|....
T Consensus 358 ~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 358 YLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHTTSEEEEC
T ss_pred HHHHHHhCCCEEeec
Confidence 899999999998764
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=8.8e-12 Score=114.83 Aligned_cols=122 Identities=17% Similarity=0.095 Sum_probs=97.1
Q ss_pred CCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccc
Q 048083 327 RSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSV 406 (692)
Q Consensus 327 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~ 406 (692)
++++|+.|.+.++.+.. ++.+. ...++|++|++++|.++.+ +. +..+++|++|++++|.+..+|+.+
T Consensus 17 ~~~~L~~L~l~~n~l~~---------i~~~~--~~~~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV---------IENLG--ATLDQFDAIDFSDNEIRKL-DG-FPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CTTSCEEEECTTSCCCS---------CCCGG--GGTTCCSEEECCSSCCCEE-CC-CCCCSSCCEEECCSSCCCEECSCH
T ss_pred CcCCceEEEeeCCCCch---------hHHhh--hcCCCCCEEECCCCCCCcc-cc-cccCCCCCEEECCCCcccccCcch
Confidence 68888999988887321 23333 3344899999999998877 44 888999999999999998888665
Q ss_pred -cCCCCCeEEecCCccceecCh--hhhccccCceeecccccccccccc----cCCCcccccc
Q 048083 407 -GNLRYLETLDVKHTKLRYLPD--SIWKAKKLQHLYLNWIHSAISWLN----FSSLNNLQTL 461 (692)
Q Consensus 407 -~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~----i~~l~~L~~L 461 (692)
..+++|++|++++|.++.+|. .+..+++|++|++++|.+...|.. +..+++|+.|
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcccee
Confidence 889999999999999888886 788899999999999988877764 6667776666
No 133
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.13 E-value=3.1e-10 Score=117.22 Aligned_cols=248 Identities=14% Similarity=0.143 Sum_probs=144.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc------chHHHHHHHHHHhhhh--------------hh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA------KFRDVLIDILQQIDDE--------------TL 63 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~------~~~~~~~~i~~~l~~~--------------~~ 63 (692)
++|.|+|++|+|||||+++++++ . .++|+++.... +...+...+.+.+... ..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 104 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE--R-----PGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFL 104 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH--S-----SEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHH--c-----CcEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecce
Confidence 58999999999999999999987 3 16677665432 4455566665554320 00
Q ss_pred --hccCCChhHHHHHHHHHhcc-ccEEEEEeCCCCccc---------cccc-----CCCCc-------c----c------
Q 048083 64 --VEASAPEADLVSSLTTLLKE-ISYLIVVEDVETPQV---------CNPN-----NIPPE-------A----E------ 109 (692)
Q Consensus 64 --~~~~~~~~~~~~~l~~~L~~-k~~LlVLDdv~~~~~---------~~~~-----~~~~~-------~----~------ 109 (692)
+.......+....+.+..+. ++++|||||++.... +..+ ..+.. . .
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~ 184 (350)
T 2qen_A 105 TLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKIT 184 (350)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTT
T ss_pred eeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhc
Confidence 00123445555666655543 499999999987432 1111 00100 0 0
Q ss_pred --------ccCCccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhhhcC-C
Q 048083 110 --------AAGPTLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGLLST-K 180 (692)
Q Consensus 110 --------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~~-~ 180 (692)
.....+++.+|+.+|+.+++....... +. . .-.+.+..+++.++|+|+++..++..+.. .
T Consensus 185 ~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~---~~-----~---~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~ 253 (350)
T 2qen_A 185 DYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREV---NL-----D---VPENEIEEAVELLDGIPGWLVVFGVEYLRNG 253 (350)
T ss_dssp CTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTT---TC-----C---CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCCccccCccceeeCCCCCHHHHHHHHHHHHHHc---CC-----C---CCHHHHHHHHHHhCCCHHHHHHHHHHHhccc
Confidence 001246899999999999998753211 11 1 11346789999999999999998875432 2
Q ss_pred ChHHH-HHHHHHhcC--CCCCCCC---CccchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHHHHHhc
Q 048083 181 EAKYW-SKVIEHADN--SRSGSGT---GSGLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFEELVIR 254 (692)
Q Consensus 181 ~~~~w-~~~l~~l~~--~~s~~~L---~~~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~L~~~ 254 (692)
....+ ....+.... ...+..+ ++..+..+..+|+ + ..+...+........ - +........+++.|++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~-~-~~~~~~~~~~l~~L~~~ 327 (350)
T 2qen_A 254 DFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKG-T-KIPEPRLYALLENLKKM 327 (350)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTT-C-CCCHHHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhC
Confidence 22111 111111100 0011122 6788889988887 2 134455544332211 0 12455678899999999
Q ss_pred cceeeeeccCCCCceEEE-cChHHHHHHH
Q 048083 255 NLIQVTKWRLDGSPKMCR-MPSAVYRVFS 282 (692)
Q Consensus 255 sLi~~~~~~~~~~~~~~~-~h~lv~~~~~ 282 (692)
++|.... ..|+ .|++++.+.+
T Consensus 328 gli~~~~-------~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 328 NWIVEED-------NTYKIADPVVATVLR 349 (350)
T ss_dssp TSEEEET-------TEEEESSHHHHHHHT
T ss_pred CCEEecC-------CEEEEecHHHHHHHc
Confidence 9998652 1354 4778887653
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=1.3e-10 Score=108.49 Aligned_cols=121 Identities=24% Similarity=0.267 Sum_probs=63.2
Q ss_pred EEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc--ccCCCCCeEEecCCccceec-ChhhhccccCceeeccc
Q 048083 366 TVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS--VGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLNW 442 (692)
Q Consensus 366 ~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~ 442 (692)
++++++++.++.+|.. +.. +|++|++++|.+..++.. ++++++|++|+|++|.++.+ |..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccC-CCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4556666666555554 322 566666666666555542 55566666666666666544 44556666666666666
Q ss_pred ccccccccc-cCCCcccccccccccCCCccccc-cccccccccccccccccc
Q 048083 443 IHSAISWLN-FSSLNNLQTLWGLSMGDDSLFNQ-TFDFTKLASLRKLGVKCY 492 (692)
Q Consensus 443 ~~~~~~~~~-i~~l~~L~~L~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~ 492 (692)
|.+..++.. +..+++|+.| +++++..... |..+..+++|+.|+++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L---~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTL---NLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEE---ECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CcCCccCHHHhcCCCCCCEE---ECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 655544332 3344433333 4555442222 224555555555555544
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=2.8e-10 Score=106.27 Aligned_cols=87 Identities=25% Similarity=0.255 Sum_probs=50.2
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceecC-hhhhccccCceeec
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQHLYL 440 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l 440 (692)
++|++|++++|.++.+|.. +..+++|++|++++|.+..++. .|.++++|++|+|++|.++.+| ..+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 3555666666666655544 6666666666666666655543 3556666666666666666554 24555666666666
Q ss_pred cccccccccc
Q 048083 441 NWIHSAISWL 450 (692)
Q Consensus 441 ~~~~~~~~~~ 450 (692)
++|.+..+|.
T Consensus 110 ~~N~l~~~~~ 119 (193)
T 2wfh_A 110 HGNDISVVPE 119 (193)
T ss_dssp CSSCCCBCCT
T ss_pred CCCCCCeeCh
Confidence 6665554443
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.05 E-value=3.3e-10 Score=105.75 Aligned_cols=115 Identities=18% Similarity=0.256 Sum_probs=98.7
Q ss_pred cccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCC
Q 048083 318 KLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRST 397 (692)
Q Consensus 318 ~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~ 397 (692)
..+|... .++++.|.+.++.+. .++..| ..+++|++|+|++|.++.+++..|..+++|++|+|++|
T Consensus 23 ~~ip~~~---~~~l~~L~L~~n~i~---------~ip~~~--~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 23 KVLPKGI---PRDVTELYLDGNQFT---------LVPKEL--SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp SSCCSCC---CTTCCEEECCSSCCC---------SCCGGG--GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCCCC---CCCCCEEECCCCcCc---------hhHHHh--hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3455544 468999999998832 234678 89999999999999999888776999999999999999
Q ss_pred CccccCc-cccCCCCCeEEecCCccceecCh-hhhccccCceeeccccccc
Q 048083 398 FIDSLPN-SVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHSA 446 (692)
Q Consensus 398 ~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~ 446 (692)
.+..+|+ .+.++++|++|+|++|.++.+|. .+..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999875 68999999999999999998886 5888999999999999865
No 137
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.04 E-value=1.4e-09 Score=112.65 Aligned_cols=245 Identities=15% Similarity=0.194 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc-----cchHHHHHHHHHHhhhh------------h----
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD-----AKFRDVLIDILQQIDDE------------T---- 62 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i~~~l~~~------------~---- 62 (692)
++|.|+|++|+|||||+++++++ ... ..+|+++... .+.......+.+.+... .
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 105 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGI 105 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTE
T ss_pred CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceE
Confidence 57999999999999999999987 322 2567776542 23344554444443210 0
Q ss_pred -hh----c------cCCChhHHHHHHHHHhccccEEEEEeCCCCccc-----cc-cc-----CCCCc---------c--c
Q 048083 63 -LV----E------ASAPEADLVSSLTTLLKEISYLIVVEDVETPQV-----CN-PN-----NIPPE---------A--E 109 (692)
Q Consensus 63 -~~----~------~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-----~~-~~-----~~~~~---------~--~ 109 (692)
.+ . ...........+.+.-+ ++++|||||++..+. +. .+ ..+.. . .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~ 184 (357)
T 2fna_A 106 VIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLY 184 (357)
T ss_dssp EECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHH
T ss_pred EecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHH
Confidence 00 0 01223334444443322 499999999976321 10 11 00111 0 0
Q ss_pred -----------cc---CCccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhh
Q 048083 110 -----------AA---GPTLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGG 175 (692)
Q Consensus 110 -----------~~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~ 175 (692)
.. ...+++.+|+.+|+.+++....... +. .. .. ...|++.++|+|+++..++.
T Consensus 185 ~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~---~~-----~~-~~----~~~i~~~t~G~P~~l~~~~~ 251 (357)
T 2fna_A 185 DYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA---DI-----DF-KD----YEVVYEKIGGIPGWLTYFGF 251 (357)
T ss_dssp HHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH---TC-----CC-CC----HHHHHHHHCSCHHHHHHHHH
T ss_pred HHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHc---CC-----CC-Cc----HHHHHHHhCCCHHHHHHHHH
Confidence 01 1346899999999999998754211 11 11 11 17899999999999999987
Q ss_pred hhcCC-ChHHHH-HHH--------HHhcC-CCCCCCCCccchhHHhhhcCCCCCCccchhhHHHHHH-hcCCCCCchHHH
Q 048083 176 LLSTK-EAKYWS-KVI--------EHADN-SRSGSGTGSGLKPFFLYVGMFPRGFEIPVRRLIHLWC-AEGFAAPIDTDL 243 (692)
Q Consensus 176 ~l~~~-~~~~w~-~~l--------~~l~~-~~s~~~L~~~~k~~fl~~a~f~~~~~i~~~~l~~~w~-~~g~~~~~~~~~ 243 (692)
.+... ....|. .+. ..+.. ......+++..+..+..+|+ +. +...+..... ..|. ......
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~--~~~~~~ 324 (357)
T 2fna_A 252 IYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI--EISDSE 324 (357)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS--CCCHHH
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC--CCCHHH
Confidence 75432 222222 111 11110 00012678889999999998 22 4444433211 1231 013456
Q ss_pred HHHHHHHHHhccceeeeeccCCCCceEEE-cChHHHHHH
Q 048083 244 AEMYFEELVIRNLIQVTKWRLDGSPKMCR-MPSAVYRVF 281 (692)
Q Consensus 244 ~~~~~~~L~~~sLi~~~~~~~~~~~~~~~-~h~lv~~~~ 281 (692)
...+++.|++.++|.... ..|+ .|++++++.
T Consensus 325 ~~~~L~~L~~~gli~~~~-------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 325 IYNYLTQLTKHSWIIKEG-------EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHTTSEEESS-------SCEEESSHHHHHHT
T ss_pred HHHHHHHHHhCCCEEecC-------CEEEecCHHHHHhh
Confidence 788999999999998643 1355 578888763
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=3.9e-12 Score=119.73 Aligned_cols=84 Identities=23% Similarity=0.196 Sum_probs=48.2
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhccccCceee
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKAKKLQHLY 439 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 439 (692)
..+++|++|++++|.+..+| . +..+++|++|++++|.+..+|..+..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred hcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 55556666666665555555 3 55556666666666555555555555555666666666555554 455555666666
Q ss_pred ccccccc
Q 048083 440 LNWIHSA 446 (692)
Q Consensus 440 l~~~~~~ 446 (692)
+++|.+.
T Consensus 122 l~~N~i~ 128 (198)
T 1ds9_A 122 MSNNKIT 128 (198)
T ss_dssp ESEEECC
T ss_pred CCCCcCC
Confidence 6555544
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=6e-10 Score=102.57 Aligned_cols=108 Identities=25% Similarity=0.309 Sum_probs=62.3
Q ss_pred cccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc-cc
Q 048083 329 CHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS-VG 407 (692)
Q Consensus 329 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~-~~ 407 (692)
++++.|.+.++.+. .+.+..| ..+++|++|++++|.++.+++..+..+++|++|++++|.+..+|.. +.
T Consensus 28 ~~l~~L~l~~n~l~--------~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 97 (177)
T 2o6r_A 28 SSATRLELESNKLQ--------SLPHGVF--DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD 97 (177)
T ss_dssp TTCSEEECCSSCCC--------CCCTTTT--TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcEEEeCCCccc--------EeCHHHh--cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhh
Confidence 45666666655521 1233445 5666666666666666655555455666666666666666655543 45
Q ss_pred CCCCCeEEecCCccceecChh-hhccccCceeeccccccc
Q 048083 408 NLRYLETLDVKHTKLRYLPDS-IWKAKKLQHLYLNWIHSA 446 (692)
Q Consensus 408 ~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~ 446 (692)
++++|++|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus 98 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 566666666666666655543 355666666666666544
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=2.9e-11 Score=113.75 Aligned_cols=127 Identities=18% Similarity=0.207 Sum_probs=93.5
Q ss_pred CCcceEEEEeecCCC-------CCCCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccceecChhhhcc
Q 048083 360 RGLVLLTVLDLEGVY-------KPKLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLRYLPDSIWKA 432 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~-------~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l 432 (692)
.....++.++++++. ++.+|.. +..+++|++|++++|.+..+| .+.++++|++|++++|.++.+|..+..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 92 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVA 92 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcC
Confidence 344444444454444 3445556 999999999999999999998 7999999999999999999999988889
Q ss_pred ccCceeecccccccccccccCCCcccccccccccCCCccccccc--cccccccccccccccc
Q 048083 433 KKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQTF--DFTKLASLRKLGVKCY 492 (692)
Q Consensus 433 ~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~ 492 (692)
++|++|++++|.+..+| .+..+++|+.| +++++....++. .+..+++|+.|+++++
T Consensus 93 ~~L~~L~L~~N~l~~l~-~~~~l~~L~~L---~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS-GIEKLVNLRVL---YMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHCSEEEEEEEECCCHH-HHHHHHHSSEE---EESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CcCCEEECcCCcCCcCC-ccccCCCCCEE---ECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 99999999999887665 44444444444 666664333222 4666777777777665
No 141
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.99 E-value=3.3e-09 Score=110.95 Aligned_cols=247 Identities=13% Similarity=0.115 Sum_probs=147.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhc--------ccccceEEecCcc-chHHHHHHHHHHhhhhhhhccCCChhHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRH--------FAKRAWIRVRGDA-KFRDVLIDILQQIDDETLVEASAPEADL 73 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~--------F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 73 (692)
.+.|.|+|++|+||||+|+++++. .... ....+|++..... +...++..++..+...............
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 357899999999999999999998 4333 2235666666655 7778888888887543222123344566
Q ss_pred HHHHHHHhccccEEEEEeCCCCccc---ccc----c-CCCCc--------------------ccccCCccccCCCCHHHH
Q 048083 74 VSSLTTLLKEISYLIVVEDVETPQV---CNP----N-NIPPE--------------------AEAAGPTLHLSRLNKEES 125 (692)
Q Consensus 74 ~~~l~~~L~~k~~LlVLDdv~~~~~---~~~----~-~~~~~--------------------~~~~~~~~~l~~L~~~ea 125 (692)
...+...++.++.+|||||++.... .+. + ....+ .......+++++++.++.
T Consensus 123 ~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~ 202 (384)
T 2qby_B 123 IDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQL 202 (384)
T ss_dssp HHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHH
T ss_pred HHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHH
Confidence 7778888877777999999986321 111 1 11111 011123679999999999
Q ss_pred HHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhC---CCch-HHHHHhhhh--c-C-C--ChHHHHHHHHHhcC-
Q 048083 126 WKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICG---GLPL-HISLLGGLL--S-T-K--EAKYWSKVIEHADN- 194 (692)
Q Consensus 126 ~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---glPL-al~~~g~~l--~-~-~--~~~~w~~~l~~l~~- 194 (692)
.+++...+... ..+. ... .+....+++.++ |.|. |+.++.... . + . ..+.+..++++...
T Consensus 203 ~~il~~~~~~~-~~~~-----~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~~ 273 (384)
T 2qby_B 203 KFILSKYAEYG-LIKG-----TYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQE 273 (384)
T ss_dssp HHHHHHHHHHT-SCTT-----SCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-cccC-----CcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhcc
Confidence 99998875211 0010 111 234566777777 8776 444433322 1 1 1 26777777666532
Q ss_pred --CCCCCCCCccchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHHHHHhccceeeeec
Q 048083 195 --SRSGSGTGSGLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFEELVIRNLIQVTKW 262 (692)
Q Consensus 195 --~~s~~~L~~~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~L~~~sLi~~~~~ 262 (692)
..+++.+++..+..+..++....+-.+. +.........| ...........++..|.++++++....
T Consensus 274 ~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 274 RLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKPLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCCCCHHHHHHHHHHHHhCCCEEEEec
Confidence 2344677888887777777611101111 11112112223 222455677889999999999997553
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.99 E-value=7.4e-10 Score=103.35 Aligned_cols=87 Identities=21% Similarity=0.197 Sum_probs=51.4
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc-ccCCCCCeEEecCCccceec-ChhhhccccCce
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS-VGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQH 437 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~ 437 (692)
..+++|++|+|++|.++.+++..|..+++|++|++++|.+..++.. +.++++|++|+|++|.++.+ |..+..+++|++
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 5666666666666666655333366666666666666666555433 55666666666666666533 455566666666
Q ss_pred eeccccccc
Q 048083 438 LYLNWIHSA 446 (692)
Q Consensus 438 L~l~~~~~~ 446 (692)
|++++|.+.
T Consensus 131 L~L~~N~l~ 139 (192)
T 1w8a_A 131 LNLASNPFN 139 (192)
T ss_dssp EECTTCCBC
T ss_pred EEeCCCCcc
Confidence 666666543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=9.9e-10 Score=100.55 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=65.3
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc-ccCCCCCeEEecCCccceecChh-hhccccCceeec
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS-VGNLRYLETLDVKHTKLRYLPDS-IWKAKKLQHLYL 440 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l 440 (692)
++|++|+|++|.+..+++..|..+++|++|+|++|.+..+|.. +.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 5677778888777777554477777888888888777777764 46777888888888777777654 777778888888
Q ss_pred cccccccccccc
Q 048083 441 NWIHSAISWLNF 452 (692)
Q Consensus 441 ~~~~~~~~~~~i 452 (692)
++|.+...+..+
T Consensus 113 ~~N~~~c~~~~~ 124 (174)
T 2r9u_A 113 YNNPWDCECRDI 124 (174)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCcccccccH
Confidence 777766554433
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=2e-09 Score=98.43 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=83.2
Q ss_pred EEEeecCCCCCCCChhhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceecChh-hhccccCceeecccc
Q 048083 366 TVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYLPDS-IWKAKKLQHLYLNWI 443 (692)
Q Consensus 366 ~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~ 443 (692)
+.++++++.+..+|.. +. .+|++|++++|.+..++ ..++++++|++|+|++|+++.+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~-~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-IP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCC-cC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 6799999999999987 54 89999999999998884 5789999999999999999999875 589999999999999
Q ss_pred cccccccc-cCCCcccccccccccCCCc
Q 048083 444 HSAISWLN-FSSLNNLQTLWGLSMGDDS 470 (692)
Q Consensus 444 ~~~~~~~~-i~~l~~L~~L~~~~~~~~~ 470 (692)
.+..+|.. +..+++|+.| +++++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L---~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHI---YLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEE---ECCSSC
T ss_pred ccceeCHHHhccccCCCEE---EeCCCC
Confidence 98877764 5556655555 666663
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.90 E-value=4.2e-09 Score=96.81 Aligned_cols=88 Identities=30% Similarity=0.289 Sum_probs=57.7
Q ss_pred ceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc-ccCCCCCeEEecCCccceecChh-hhccccCceeec
Q 048083 363 VLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS-VGNLRYLETLDVKHTKLRYLPDS-IWKAKKLQHLYL 440 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l 440 (692)
++|+.|++++|.++.+++..+..+++|++|++++|.+..+|.. +.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4666777777776666655456677777777777776666643 46677777777777766666543 566677777777
Q ss_pred cccccccccc
Q 048083 441 NWIHSAISWL 450 (692)
Q Consensus 441 ~~~~~~~~~~ 450 (692)
++|.+..+|.
T Consensus 108 ~~N~l~~~~~ 117 (177)
T 2o6r_A 108 DTNQLKSVPD 117 (177)
T ss_dssp CSSCCSCCCT
T ss_pred cCCcceEeCH
Confidence 7766655544
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=4.1e-09 Score=107.62 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=77.2
Q ss_pred ccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccccccc-ccccCccCccc-eeeeeccCCCCCchhhhhcCCCCCe
Q 048083 506 RSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALRMFS-AKTSSFPRNLK-IVTLSMSRLYWDPMEALEKLCHLNI 583 (692)
Q Consensus 506 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p-~~~~~l~~~L~-~L~L~~~~l~~~~~~~l~~l~~L~~ 583 (692)
.|++|+++++.+|....+....|..+++|++|.+.++...++ ..|..+ .+|+ .+++.. .++......|.+|++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~-~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNC-GRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTC-TTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCC-hhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 356999999998888888888899999999999988764444 445666 8898 999988 677667778899999999
Q ss_pred eeecCCccCccEEEEecCCCCcccEEE
Q 048083 584 LRIIGEAYEGKKMTCQAGGFPQLRVLK 610 (692)
Q Consensus 584 L~l~~~~~~~~~~~~~~~~~~~L~~L~ 610 (692)
+++..+.+... -...+.++++|+.++
T Consensus 302 l~l~~n~i~~I-~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTL-GDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEE-CTTTTCTTCCCCEEE
T ss_pred EEeCCCccCcc-chhhhcCCcchhhhc
Confidence 99976765421 112345677777775
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=1.2e-08 Score=106.54 Aligned_cols=239 Identities=12% Similarity=0.118 Sum_probs=125.1
Q ss_pred HhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceecChhhhcc
Q 048083 354 DKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYLPDSIWKA 432 (692)
Q Consensus 354 ~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~~~~l 432 (692)
...| ..+ +|+.+.+..+ ++.++..+|.++ +|+.+.+.. .+..++ ..|.+|.+|+.+++.+|+++.+|.....+
T Consensus 129 ~~aF--~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~ 202 (401)
T 4fdw_A 129 KDAF--RNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY 202 (401)
T ss_dssp TTTT--TTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT
T ss_pred Hhhc--ccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee
Confidence 3445 443 4555555443 444554444443 455555554 344443 34555566666666555555555433334
Q ss_pred ccCceeecccccccccc-cccCCCcccccccccccCCCccccccc-ccccccccccccccccchhh-HHHHHHHhhccCC
Q 048083 433 KKLQHLYLNWIHSAISW-LNFSSLNNLQTLWGLSMGDDSLFNQTF-DFTKLASLRKLGVKCYSQRV-IDSIAELVSRSTR 509 (692)
Q Consensus 433 ~~L~~L~l~~~~~~~~~-~~i~~l~~L~~L~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~-~~~l~~~~~~~~~ 509 (692)
.+|+.+.+..+ +..++ ..+..+.+|+.+ .+..+ ...++. .+.+ .+|+.+.+......+ ...| ..|++
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l---~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF----~~c~~ 272 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTI---EIPEN-VSTIGQEAFRE-SGITTVKLPNGVTNIASRAF----YYCPE 272 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCE---ECCTT-CCEECTTTTTT-CCCSEEEEETTCCEECTTTT----TTCTT
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEE---ecCCC-ccCcccccccc-CCccEEEeCCCccEEChhHh----hCCCC
Confidence 55555555433 22222 223334444433 33222 111111 2333 455555553321111 1122 23458
Q ss_pred cceEEeeeccCC-----ccccCCCCCCCCccEEEEcccccccc-ccccCccCccceeeeeccCCCCCchhhhhcCCCCCe
Q 048083 510 LQSLKLVYAWRD-----DYSDIPFKAQANLQELYLRGALRMFS-AKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNI 583 (692)
Q Consensus 510 L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~L~~~~~~~p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 583 (692)
|+++.+.++... ......|..|++|+.+.+......++ ..|..+ .+|+.+.|..+ ++......|.++ +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c-~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGN-RKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTC-CSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCC-CCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 888888776443 34566788888999988876554443 345556 88899988554 555556678888 8999
Q ss_pred eeecCCccCccEEEEecCCCC-cccEEEec
Q 048083 584 LRIIGEAYEGKKMTCQAGGFP-QLRVLKLW 612 (692)
Q Consensus 584 L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~ 612 (692)
+++.++...... ...+.+++ +++.|.+-
T Consensus 350 l~l~~n~~~~l~-~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 350 VKVEGTTPPQVF-EKVWYGFPDDITVIRVP 378 (401)
T ss_dssp EEECCSSCCBCC-CSSCCCSCTTCCEEEEC
T ss_pred EEEcCCCCcccc-cccccCCCCCccEEEeC
Confidence 999877543211 11223343 55666653
No 148
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.84 E-value=2.7e-08 Score=104.10 Aligned_cols=245 Identities=14% Similarity=0.110 Sum_probs=147.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc------cccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF------AKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSL 77 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 77 (692)
+.|.|+|++|+||||+|+++++. ....+ ...+|++.....+...++..++..+..... .......+....+
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l 121 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP-FTGLSVGEVYERL 121 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC-SSCCCHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHH
Confidence 56899999999999999999988 43322 225667777767778888888888854322 1233455556667
Q ss_pred HHHhc--cccEEEEEeCCCCcccc----ccc--------CC--CCc--------------------ccccC-CccccCCC
Q 048083 78 TTLLK--EISYLIVVEDVETPQVC----NPN--------NI--PPE--------------------AEAAG-PTLHLSRL 120 (692)
Q Consensus 78 ~~~L~--~k~~LlVLDdv~~~~~~----~~~--------~~--~~~--------------------~~~~~-~~~~l~~L 120 (692)
...+. +++.+|||||++....- +.+ .. +.. ..... ..++++++
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l 201 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPY 201 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCC
T ss_pred HHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCC
Confidence 76663 46899999999863211 111 11 111 00112 25699999
Q ss_pred CHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhC---CCc-hHHHHHhhhhc-----CCC---hHHHHHH
Q 048083 121 NKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICG---GLP-LHISLLGGLLS-----TKE---AKYWSKV 188 (692)
Q Consensus 121 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---glP-Lal~~~g~~l~-----~~~---~~~w~~~ 188 (692)
+.++..+++...+.... .+. ... .+....++++++ |.| .|+.++..... +.. .+.+..+
T Consensus 202 ~~~~~~~il~~~~~~~~-~~~-----~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a 272 (387)
T 2v1u_A 202 TAPQLRDILETRAEEAF-NPG-----VLD---PDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSA 272 (387)
T ss_dssp CHHHHHHHHHHHHHHHB-CTT-----TBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhc-cCC-----CCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 99999999987752210 010 111 234567778887 999 33333332211 212 5666666
Q ss_pred HHHhcC---CCCCCCCCccchhHHhhhcCCCCC-CccchhhHHHHH----HhcCCCCCchHHHHHHHHHHHHhccceeee
Q 048083 189 IEHADN---SRSGSGTGSGLKPFFLYVGMFPRG-FEIPVRRLIHLW----CAEGFAAPIDTDLAEMYFEELVIRNLIQVT 260 (692)
Q Consensus 189 l~~l~~---~~s~~~L~~~~k~~fl~~a~f~~~-~~i~~~~l~~~w----~~~g~~~~~~~~~~~~~~~~L~~~sLi~~~ 260 (692)
+..... ..++..+++..+..+..++....+ ..+....+.+.. ...| ........+..+++.|...++++..
T Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 273 RAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 655432 234467788888777767633223 234444333322 2233 3334567788999999999999985
Q ss_pred e
Q 048083 261 K 261 (692)
Q Consensus 261 ~ 261 (692)
.
T Consensus 352 ~ 352 (387)
T 2v1u_A 352 V 352 (387)
T ss_dssp E
T ss_pred e
Confidence 4
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=5.6e-09 Score=95.16 Aligned_cols=81 Identities=26% Similarity=0.228 Sum_probs=39.8
Q ss_pred EEEeecCCCCCCCChhhhccccccceeeccCCCcccc-CccccCCCCCeEEecCCccceecChh-hhccccCceeecccc
Q 048083 366 TVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSL-PNSVGNLRYLETLDVKHTKLRYLPDS-IWKAKKLQHLYLNWI 443 (692)
Q Consensus 366 ~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~ 443 (692)
++++++++.++.+|.. + ..+|++|++++|.+..+ |..+.++++|++|+|++|+++.+|.. +.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3455555555555543 2 14455555555555444 23345555555555555555544432 345555555555555
Q ss_pred cccccc
Q 048083 444 HSAISW 449 (692)
Q Consensus 444 ~~~~~~ 449 (692)
.+..+|
T Consensus 89 ~l~~~~ 94 (170)
T 3g39_A 89 QLKSIP 94 (170)
T ss_dssp CCCCCC
T ss_pred ccCEeC
Confidence 544443
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=1.2e-08 Score=106.60 Aligned_cols=234 Identities=12% Similarity=0.060 Sum_probs=163.1
Q ss_pred CCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceecC-hhhhccccCce
Q 048083 360 RGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQH 437 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~ 437 (692)
.-+..++.+.+.. .++.++..+|.++ +|+.+.+..+ +..++. .|.+ .+|+.+.+.. +++.++ ..+.+|++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3345666666654 4667777768775 7999999775 777764 4555 4799999986 677775 57889999999
Q ss_pred eecccccccccccccCCCcccccccccccCCCcccccc-cccccccccccccccccchhh-HHHHHHHhhccCCcceEEe
Q 048083 438 LYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQT-FDFTKLASLRKLGVKCYSQRV-IDSIAELVSRSTRLQSLKL 515 (692)
Q Consensus 438 L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~-~~~l~~~~~~~~~L~~L~l 515 (692)
++++.+.+..++.......+|+.+ .+..+ ...++ ..+.++++|+.+.+......+ ...|.. .+|+++.+
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l---~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-----~~L~~i~l 255 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEV---LLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-----SGITTVKL 255 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEE---ECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-----CCCSEEEE
T ss_pred eecCCCcceEechhhEeecccCEE---EeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-----CCccEEEe
Confidence 999998888887766556666555 55443 22222 257888899999887541111 122222 38999999
Q ss_pred eeccCCccccCCCCCCCCccEEEEccccc------cc-cccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecC
Q 048083 516 VYAWRDDYSDIPFKAQANLQELYLRGALR------MF-SAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIG 588 (692)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~------~~-p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~ 588 (692)
.. ....+....|..|++|+.+.+.++.. .+ +..|..+ ++|+.+.|.. .+.......|.+|++|+.+.+..
T Consensus 256 p~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c-~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 256 PN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC-PKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp ET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC-TTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred CC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC-ccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 54 36667778899999999999987652 23 3455566 8999999984 46666677889999999999965
Q ss_pred CccCccEE-EEecCCCCcccEEEeccC
Q 048083 589 EAYEGKKM-TCQAGGFPQLRVLKLWNL 614 (692)
Q Consensus 589 ~~~~~~~~-~~~~~~~~~L~~L~l~~~ 614 (692)
+ +. .+ ...+.++ +|+.+.+.+.
T Consensus 333 ~-l~--~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 333 N-VT--QINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp T-CC--EECTTSSSSS-CCCEEEECCS
T ss_pred c-cc--EEcHHhCCCC-CCCEEEEcCC
Confidence 4 21 11 1234567 8999999874
No 151
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=3.5e-08 Score=103.35 Aligned_cols=268 Identities=14% Similarity=0.137 Sum_probs=154.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-cccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-AKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLK 82 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 82 (692)
+.+.|+|++|+||||+|+++++. ..... ..+++++.....+...++..++..+..... .......+..+.+...+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSCCCHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCCCCHHHHHHHHHHHHh
Confidence 37999999999999999999988 43332 235566666666777888888887754322 123345556666666664
Q ss_pred --cccEEEEEeCCCCcc--ccccc-----CCCC----c---------------------ccccCCccccCCCCHHHHHHH
Q 048083 83 --EISYLIVVEDVETPQ--VCNPN-----NIPP----E---------------------AEAAGPTLHLSRLNKEESWKL 128 (692)
Q Consensus 83 --~k~~LlVLDdv~~~~--~~~~~-----~~~~----~---------------------~~~~~~~~~l~~L~~~ea~~L 128 (692)
+++.+|||||++..+ ....+ ..+. + .......+++++++.++..++
T Consensus 122 ~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~ 201 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDI 201 (389)
T ss_dssp HTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHH
T ss_pred hcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHH
Confidence 568899999998742 11111 1111 1 000112579999999999999
Q ss_pred HHhhccccccccCccccCCCchhHHHHHHHHHHHh---------CCCchHHH-HHhhhhc-----CCC---hHHHHHHHH
Q 048083 129 LLKKVPVATAAESDDDLNNNSESINTFKERILEIC---------GGLPLHIS-LLGGLLS-----TKE---AKYWSKVIE 190 (692)
Q Consensus 129 f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~glPLal~-~~g~~l~-----~~~---~~~w~~~l~ 190 (692)
+...+... . ....--.+....+++.+ .|.|-.+. ++-.... +.. .+....+..
T Consensus 202 l~~~~~~~---~------~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 202 LLDRAKAG---L------AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp HHHHHHHH---B------CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHhh---c------CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 98775321 1 00111235567888888 78774433 3322211 212 444445544
Q ss_pred HhcCC---CCCCCCCccchhHHhhhcCCC---CCCccchhhHHHHHHh----cCCCCCchHHHHHHHHHHHHhccceeee
Q 048083 191 HADNS---RSGSGTGSGLKPFFLYVGMFP---RGFEIPVRRLIHLWCA----EGFAAPIDTDLAEMYFEELVIRNLIQVT 260 (692)
Q Consensus 191 ~l~~~---~s~~~L~~~~k~~fl~~a~f~---~~~~i~~~~l~~~w~~----~g~~~~~~~~~~~~~~~~L~~~sLi~~~ 260 (692)
..... ..+..++++.+.++..++.+. .+..+....+...+.. .| +.+........++..|.++++|...
T Consensus 273 ~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 273 EVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYG-ERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 44321 123456777787777777554 2224555555554432 23 2223456678899999999999986
Q ss_pred ec----cCCCCceEEEc----ChHHHHHHHHh
Q 048083 261 KW----RLDGSPKMCRM----PSAVYRVFSKE 284 (692)
Q Consensus 261 ~~----~~~~~~~~~~~----h~lv~~~~~~~ 284 (692)
.. +..|+...++. |+++..+...+
T Consensus 352 ~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~ 383 (389)
T 1fnn_A 352 QNKRGEGVRGRTTLISIGTEPLDTLEAVITKL 383 (389)
T ss_dssp EC---------CEEEECCSSCHHHHHHHHHHH
T ss_pred eeccCCCCCCceeEEEeCCCHHHHHHHHHHHH
Confidence 53 22233334433 45555544443
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.81 E-value=6.1e-09 Score=94.89 Aligned_cols=88 Identities=24% Similarity=0.276 Sum_probs=75.6
Q ss_pred cceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCcc-ccCCCCCeEEecCCccceecCh-hhhccccCceee
Q 048083 362 LVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPNS-VGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLY 439 (692)
Q Consensus 362 ~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~ 439 (692)
.++|++|+|++|.++.+++..|..+++|++|+|++|.+..+|+. +.++++|++|+|++|.++.+|. .+..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 36788999999999988666589999999999999999998865 5889999999999999998876 588899999999
Q ss_pred cccccccccc
Q 048083 440 LNWIHSAISW 449 (692)
Q Consensus 440 l~~~~~~~~~ 449 (692)
+++|.+...+
T Consensus 109 L~~N~~~c~c 118 (170)
T 3g39_A 109 LLNNPWDCAC 118 (170)
T ss_dssp CCSSCBCTTB
T ss_pred eCCCCCCCCc
Confidence 9999876443
No 153
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.75 E-value=2.2e-08 Score=104.73 Aligned_cols=245 Identities=16% Similarity=0.165 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhccc---ccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFA---KRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 80 (692)
+.|.|+|++|+||||||+++++. ....+. .++|++.....+...++..++..+...... ......+....+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~ 122 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF-TGLSIAELYRRLVKA 122 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCS-SSCCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHH
Confidence 57899999999999999999998 555542 355666655556667777776666432211 223345556666666
Q ss_pred hc--cccEEEEEeCCCCcc------ccccc-----CCCCc----------c-----------cccC-CccccCCCCHHHH
Q 048083 81 LK--EISYLIVVEDVETPQ------VCNPN-----NIPPE----------A-----------EAAG-PTLHLSRLNKEES 125 (692)
Q Consensus 81 L~--~k~~LlVLDdv~~~~------~~~~~-----~~~~~----------~-----------~~~~-~~~~l~~L~~~ea 125 (692)
+. +++.+||||+++... .+..+ ..+.. . .... ..+++++++.++.
T Consensus 123 l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~ 202 (386)
T 2qby_A 123 VRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEEL 202 (386)
T ss_dssp HHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHH
T ss_pred HhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHH
Confidence 64 348999999997622 11111 01111 0 0011 2569999999999
Q ss_pred HHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhC---CCch-HHHHHhhhhc-----CC---ChHHHHHHHHHhc
Q 048083 126 WKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICG---GLPL-HISLLGGLLS-----TK---EAKYWSKVIEHAD 193 (692)
Q Consensus 126 ~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---glPL-al~~~g~~l~-----~~---~~~~w~~~l~~l~ 193 (692)
.+++...+... . ....-..+....+++.++ |.|. ++.++..... +. ..+.+..++....
T Consensus 203 ~~il~~~~~~~---~------~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 203 EDILTKRAQMA---F------KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHH---B------CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh---c------cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 99998764211 1 001112344566777776 9887 4343332211 11 1555555554443
Q ss_pred C---CCCCCCCCccchhHHhhhcCCCC-C-CccchhhHHHHH----HhcCCCCCchHHHHHHHHHHHHhccceeeee
Q 048083 194 N---SRSGSGTGSGLKPFFLYVGMFPR-G-FEIPVRRLIHLW----CAEGFAAPIDTDLAEMYFEELVIRNLIQVTK 261 (692)
Q Consensus 194 ~---~~s~~~L~~~~k~~fl~~a~f~~-~-~~i~~~~l~~~w----~~~g~~~~~~~~~~~~~~~~L~~~sLi~~~~ 261 (692)
. ...+..+++..+..+..++...+ + ..+....+...+ ...| +..........+++.|.+.++|+...
T Consensus 274 ~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 274 RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 2 22345677777777777774322 2 123333332221 1123 22234456788899999999998753
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.63 E-value=3.6e-07 Score=95.66 Aligned_cols=307 Identities=10% Similarity=0.061 Sum_probs=165.2
Q ss_pred ccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCC
Q 048083 319 LIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTF 398 (692)
Q Consensus 319 ~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 398 (692)
.+....|.+|.+|+++.+...- ..+-...| ..|.+|+.+++..+ ++.++..+|..+..|+.+.+..+
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~i---------~~I~~~aF--~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~- 127 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPSTV---------REIGEFAF--ENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM- 127 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTTC---------CEECTTTT--TTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred EhHHHHhhCCCCceEEEeCCCc---------cCcchhHh--hCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-
Confidence 3455667778888888775332 22345667 78888888888654 66666666777777777766543
Q ss_pred ccccC-ccccCCCCCeEEecCCccceec-ChhhhccccCceeecccccccccccccCCCcccccccccccCCCccccc-c
Q 048083 399 IDSLP-NSVGNLRYLETLDVKHTKLRYL-PDSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFNQ-T 475 (692)
Q Consensus 399 i~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~~-~ 475 (692)
+..+. ..+.++..+....... +..+ ...+.++++|+.+.+..+...-....+..+.+|+.+ .+..+- ..+ .
T Consensus 128 l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i---~l~~~~-~~I~~ 201 (394)
T 4fs7_A 128 LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSI---KLPRNL-KIIRD 201 (394)
T ss_dssp CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBC---CCCTTC-CEECT
T ss_pred eeeecceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCccceeccccccCCCCceEE---EcCCCc-eEeCc
Confidence 22222 2334443333222221 1222 234666777777777554322122234444454444 333321 111 1
Q ss_pred cccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEccccccc-cccccCcc
Q 048083 476 FDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALRMF-SAKTSSFP 554 (692)
Q Consensus 476 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-p~~~~~l~ 554 (692)
..+..+.+|+.+.+......... ....+.+|+++.+... ........+..+..|+.+.+......+ ...+...
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~i~~----~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~- 275 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYYLGD----FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNC- 275 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCEECT----TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTC-
T ss_pred hhhccccccceeecCCCceEeeh----hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccc-
Confidence 13555666666655433111111 1112346777776543 344445567777888888887655333 2233344
Q ss_pred CccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEE-EecCCCCcccEEEeccCCCCcEEEec-CCCccccce
Q 048083 555 RNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMT-CQAGGFPQLRVLKLWNLSSLEEWTVQ-EAAMPRLRE 632 (692)
Q Consensus 555 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~ 632 (692)
.+++.+......+. ...+..+.+|+.+.+..+ .. .+. ..+.++.+|+.+.|. .+++.+... ...+++|+.
T Consensus 276 ~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~ 347 (394)
T 4fs7_A 276 SGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSN 347 (394)
T ss_dssp TTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCTTCCE
T ss_pred cccceeccCceeec---cccccccccccccccccc-cc--eechhhhcCCCCCCEEEeC--CcccEEhHHhccCCCCCCE
Confidence 66776666554332 234667778888887543 11 111 124467778888774 246665432 234577888
Q ss_pred eecccccccC--CCcChhhhhccCcEEEEec
Q 048083 633 LEIRSCNKLK--PPEGLRNLAATLKDIVLTN 661 (692)
Q Consensus 633 L~l~~c~~l~--~p~~~~~l~~sL~~L~i~~ 661 (692)
+.+... ++ -...+.++++ |+.+.+..
T Consensus 348 i~lp~~--l~~I~~~aF~~C~~-L~~i~lp~ 375 (394)
T 4fs7_A 348 INFPLS--LRKIGANAFQGCIN-LKKVELPK 375 (394)
T ss_dssp ECCCTT--CCEECTTTBTTCTT-CCEEEEEG
T ss_pred EEECcc--ccEehHHHhhCCCC-CCEEEECC
Confidence 877542 55 3446677777 88888754
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=9.8e-08 Score=98.16 Aligned_cols=91 Identities=20% Similarity=0.091 Sum_probs=67.7
Q ss_pred HHhhhccCCcceEEEEeecC-CCCCCCChhhhccccccceeeccCCCccccCc-cccCCCCCeEEecCCccceecChhhh
Q 048083 353 LDKIISNRGLVLLTVLDLEG-VYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN-SVGNLRYLETLDVKHTKLRYLPDSIW 430 (692)
Q Consensus 353 ~~~~~~~~~~~~L~~L~L~~-~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~~~ 430 (692)
+|. + ..+++|+.|+|++ |.+..+++..|..+.+|++|+|++|.+..+|+ .|.+|++|+.|+|++|+|+.+|..+.
T Consensus 24 ip~-l--~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 24 LHH-L--PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTT-S--CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred cCC-C--CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 344 6 7778888888885 78887776557888888888888888877764 56788888888888888887776544
Q ss_pred ccccCceeeccccccc
Q 048083 431 KAKKLQHLYLNWIHSA 446 (692)
Q Consensus 431 ~l~~L~~L~l~~~~~~ 446 (692)
....|+.|++.+|.+.
T Consensus 101 ~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 101 QGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCCEEECCSSCCC
T ss_pred ccCCceEEEeeCCCcc
Confidence 4334888888877765
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=2.2e-08 Score=103.42 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=38.6
Q ss_pred ceEEEEeecCCCCCCC-ChhhhccccccceeeccCCCccccC-----ccc-cCCCCCeEEecCCcccee-----cChhhh
Q 048083 363 VLLTVLDLEGVYKPKL-SDHVIGKLLHLSYLGLRSTFIDSLP-----NSV-GNLRYLETLDVKHTKLRY-----LPDSIW 430 (692)
Q Consensus 363 ~~L~~L~L~~~~~~~l-~~~~~~~l~~L~~L~l~~~~i~~lp-----~~~-~~l~~L~~L~L~~~~l~~-----lp~~~~ 430 (692)
++|+.|+|++|.+... .......+.+|++|+|++|.++... ..+ ...++|++|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4566666666555421 1111223445556666555553221 111 234555556665555432 233344
Q ss_pred ccccCceeecccccc
Q 048083 431 KAKKLQHLYLNWIHS 445 (692)
Q Consensus 431 ~l~~L~~L~l~~~~~ 445 (692)
.+++|++|++++|.+
T Consensus 181 ~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 181 GNTSVTHLSLLHTGL 195 (372)
T ss_dssp TCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCCC
Confidence 455555555555543
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=4.3e-07 Score=93.32 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=81.7
Q ss_pred EEeecCC-CCCCCChhhhccccccceeeccC-CCccccC-ccccCCCCCeEEecCCccceecC-hhhhccccCceeeccc
Q 048083 367 VLDLEGV-YKPKLSDHVIGKLLHLSYLGLRS-TFIDSLP-NSVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQHLYLNW 442 (692)
Q Consensus 367 ~L~L~~~-~~~~l~~~~~~~l~~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~ 442 (692)
.++++++ .++.+|. +..+.+|++|+|++ |.+..+| ..|++|++|+.|+|++|+|+.+| ..+.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4588888 8988887 89999999999996 9999998 46899999999999999999775 5789999999999999
Q ss_pred ccccccccccCCCcccccccccccCCC
Q 048083 443 IHSAISWLNFSSLNNLQTLWGLSMGDD 469 (692)
Q Consensus 443 ~~~~~~~~~i~~l~~L~~L~~~~~~~~ 469 (692)
|.+..+|..+.....|+.| ++.++
T Consensus 90 N~l~~~~~~~~~~~~L~~l---~l~~N 113 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQEL---VLSGN 113 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEE---ECCSS
T ss_pred CccceeCHHHcccCCceEE---EeeCC
Confidence 9999888765443334444 66666
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=6.5e-08 Score=99.08 Aligned_cols=140 Identities=20% Similarity=0.223 Sum_probs=93.2
Q ss_pred CCCCCCccEEEEcccc-ccccccccCccCccceeeeeccCCCCCchhhhh--cCCCCCeeeecC--CccCccE-E-----
Q 048083 528 FKAQANLQELYLRGAL-RMFSAKTSSFPRNLKIVTLSMSRLYWDPMEALE--KLCHLNILRIIG--EAYEGKK-M----- 596 (692)
Q Consensus 528 l~~~~~L~~L~L~~~~-~~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~l~~--~~~~~~~-~----- 596 (692)
+..+|+|++|+|+++. ..++. + .. ++|++|+|..|.+.......+. .+|+|+.|+|+. +.+.+.. +
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 4567889999998864 33443 3 35 8999999999988766666665 789999999853 2222110 0
Q ss_pred EEecCCCCcccEEEeccCCCCcEEE---ecCCCccccceeecccccccC------CCcChhhhhccCcEEEEecCc--hH
Q 048083 597 TCQAGGFPQLRVLKLWNLSSLEEWT---VQEAAMPRLRELEIRSCNKLK------PPEGLRNLAATLKDIVLTNMP--ST 665 (692)
Q Consensus 597 ~~~~~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~c~~l~------~p~~~~~l~~sL~~L~i~~c~--~~ 665 (692)
......||+|+.|.+.+|..-.... .....+|+|++|+++.| .+. ++.++.++++ |+.|++++|. .+
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~-L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKH-LKFINMKYNYLSDE 322 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTT-CSEEECCSBBCCHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCc-ceEEECCCCcCCHH
Confidence 0112358999999998865332111 11246899999999874 455 3556678898 9999999885 34
Q ss_pred HHHHHhh
Q 048083 666 FGEEAQR 672 (692)
Q Consensus 666 ~~~~~~~ 672 (692)
..+.+..
T Consensus 323 ~~~~l~~ 329 (362)
T 2ra8_A 323 MKKELQK 329 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444544
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=2.3e-08 Score=103.31 Aligned_cols=62 Identities=21% Similarity=0.211 Sum_probs=32.3
Q ss_pred cceEEEEeecCCCCCCCChhhhccc-----cccceeeccCCCcccc--CccccCCCCCeEEecCCccce
Q 048083 362 LVLLTVLDLEGVYKPKLSDHVIGKL-----LHLSYLGLRSTFIDSL--PNSVGNLRYLETLDVKHTKLR 423 (692)
Q Consensus 362 ~~~L~~L~L~~~~~~~l~~~~~~~l-----~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~L~~~~l~ 423 (692)
++.|+.|+|++|.++......+..+ .+|+.|+|++|.++.. ......+.+|++|+|++|.++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 4567778888877763322212222 4666666666655321 111223445566666666554
No 160
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.34 E-value=2.8e-07 Score=89.35 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=38.2
Q ss_pred ccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhh
Q 048083 114 TLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGL 176 (692)
Q Consensus 114 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~ 176 (692)
.+++++++.++..+++...+... +. .--.+....|++.++|.|..+..+...
T Consensus 179 ~i~l~~l~~~e~~~~l~~~~~~~---~~--------~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 179 QFHLKALDVEQIRHQLEHILNEE---HI--------AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHT---TC--------CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHhc---CC--------CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46899999999999998876433 21 111345678999999999888766543
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=1.9e-06 Score=90.03 Aligned_cols=320 Identities=13% Similarity=0.050 Sum_probs=178.7
Q ss_pred ccccceeEEEEEecCCCCCcccCCccccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCC
Q 048083 299 QQSLFVRRLAVYLSGGVNTKLIPSSFLDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKL 378 (692)
Q Consensus 299 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l 378 (692)
.....++.+.+. . ....+....|.+|++|+++.+.++- ..+-...| ..+..|+.+.+..+ +..+
T Consensus 68 ~~c~~L~~i~lp--~--~i~~I~~~aF~~c~~L~~i~lp~~l---------~~I~~~aF--~~c~~L~~i~~p~~-l~~i 131 (394)
T 4fs7_A 68 QGCRKVTEIKIP--S--TVREIGEFAFENCSKLEIINIPDSV---------KMIGRCTF--SGCYALKSILLPLM-LKSI 131 (394)
T ss_dssp TTCTTEEEEECC--T--TCCEECTTTTTTCTTCCEECCCTTC---------CEECTTTT--TTCTTCCCCCCCTT-CCEE
T ss_pred hCCCCceEEEeC--C--CccCcchhHhhCCCCCcEEEeCCCc---------eEccchhh--cccccchhhcccCc-eeee
Confidence 344556666664 2 3345667778899999999886543 12346678 88888888777543 4445
Q ss_pred ChhhhccccccceeeccCCCccccC-ccccCCCCCeEEecCCccceecC-hhhhccccCceeecccccccccccccCCCc
Q 048083 379 SDHVIGKLLHLSYLGLRSTFIDSLP-NSVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQHLYLNWIHSAISWLNFSSLN 456 (692)
Q Consensus 379 ~~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~ 456 (692)
...+|..+..+........ ..+. ..|.+|.+|+.+.+..+ +..++ ..+.++.+|+.+.+..+-..-....+..+.
T Consensus 132 ~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECI 208 (394)
T ss_dssp CTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCT
T ss_pred cceeeecccccccccCccc--cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhcccc
Confidence 5554666654443333222 2222 35778888888888655 33443 457778888888876652211223344455
Q ss_pred ccccccccccCCCcccccccccccccccccccccccchhhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccE
Q 048083 457 NLQTLWGLSMGDDSLFNQTFDFTKLASLRKLGVKCYSQRVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQE 536 (692)
Q Consensus 457 ~L~~L~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 536 (692)
.|+.+ ...... ...........+|+.+.+......... .....|..++.+.+..+ ........+..++.++.
T Consensus 209 ~L~~i---~~~~~~-~~i~~~~~~~~~l~~i~ip~~~~~i~~---~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~ 280 (394)
T 4fs7_A 209 LLENM---EFPNSL-YYLGDFALSKTGVKNIIIPDSFTELGK---SVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKK 280 (394)
T ss_dssp TCCBC---CCCTTC-CEECTTTTTTCCCCEEEECTTCCEECS---STTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCE
T ss_pred cccee---ecCCCc-eEeehhhcccCCCceEEECCCceeccc---ccccccccceeEEcCCC-cceeeccccccccccce
Confidence 55444 222221 000011222345555544322111000 01123457888887765 34445556777788888
Q ss_pred EEEcccccccc-ccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEE-EEecCCCCcccEEEeccC
Q 048083 537 LYLRGALRMFS-AKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKM-TCQAGGFPQLRVLKLWNL 614 (692)
Q Consensus 537 L~L~~~~~~~p-~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~ 614 (692)
+...... ++ ..+... .+|+.+.+..+ +.......|.++.+|+.+++..+ +. .+ ...+.++.+|+.+.+..
T Consensus 281 ~~~~~~~--i~~~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~c~~L~~i~lp~- 352 (394)
T 4fs7_A 281 VIYGSVI--VPEKTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE--EIGKRSFRGCTSLSNINFPL- 352 (394)
T ss_dssp EEECSSE--ECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC--EECTTTTTTCTTCCEECCCT-
T ss_pred eccCcee--ecccccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc--EEhHHhccCCCCCCEEEECc-
Confidence 7765432 22 233444 78888888654 44445566788888988888633 21 11 12345678888888753
Q ss_pred CCCcEEEec-CCCccccceeecccccccC-CCcChhhhhccCcEE
Q 048083 615 SSLEEWTVQ-EAAMPRLRELEIRSCNKLK-PPEGLRNLAATLKDI 657 (692)
Q Consensus 615 ~~l~~l~~~-~~~~~~L~~L~l~~c~~l~-~p~~~~~l~~sL~~L 657 (692)
+++.+... ...+++|+.+++.. .++ +...+.++++ |+.+
T Consensus 353 -~l~~I~~~aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~-L~~I 393 (394)
T 4fs7_A 353 -SLRKIGANAFQGCINLKKVELPK--RLEQYRYDFEDTTK-FKWI 393 (394)
T ss_dssp -TCCEECTTTBTTCTTCCEEEEEG--GGGGGGGGBCTTCE-EEEE
T ss_pred -cccEehHHHhhCCCCCCEEEECC--CCEEhhheecCCCC-CcEE
Confidence 36665432 23457788887754 244 4445556666 6554
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=2.6e-07 Score=82.89 Aligned_cols=87 Identities=9% Similarity=0.082 Sum_probs=54.6
Q ss_pred CccceeeeeccCCCCCchhhhhcCCCCCeeeecCCc-cCccEEEEecCC----CCcccEEEeccCCCCcEEEe-cCCCcc
Q 048083 555 RNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEA-YEGKKMTCQAGG----FPQLRVLKLWNLSSLEEWTV-QEAAMP 628 (692)
Q Consensus 555 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~l~~-~~~~~~ 628 (692)
.+|++|++++|.++...+..+.++++|+.|+|++|. +++..+. .+.. .++|++|+|++|+++++--. ....++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 579999999999888777777778888888887775 3332221 1112 24566677666666654211 122456
Q ss_pred ccceeecccccccC
Q 048083 629 RLRELEIRSCNKLK 642 (692)
Q Consensus 629 ~L~~L~l~~c~~l~ 642 (692)
+|++|++++|+.++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 66666666666665
No 163
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.21 E-value=4.3e-06 Score=79.60 Aligned_cols=139 Identities=13% Similarity=0.096 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecC--ccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRG--DAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLK 82 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 82 (692)
.|.|+|.+|+|||++|+++++. .........|+.+.. ......+... ........ ..-.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------------~~~~ 100 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHK-IKEFARTA----------------PIGG 100 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHH-HHHHHTSC----------------CSTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHH-HHHHhccc----------------CCCc
Confidence 4899999999999999999987 433333344444432 2222221111 11111000 0012
Q ss_pred cccEEEEEeCCCCcc--ccccc-----CCCCc---------------c-cccCCccccCCCCHHHHHHHHHhhccccccc
Q 048083 83 EISYLIVVEDVETPQ--VCNPN-----NIPPE---------------A-EAAGPTLHLSRLNKEESWKLLLKKVPVATAA 139 (692)
Q Consensus 83 ~k~~LlVLDdv~~~~--~~~~~-----~~~~~---------------~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 139 (692)
.++.+||+||++... ..+.+ ..+.+ + ......+++++++.++..+++.+.+...
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~--- 177 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKE--- 177 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH---
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHc---
Confidence 567899999987642 11111 11111 0 0011246899999999999998876432
Q ss_pred cCccccCCCchhHHHHHHHHHHHhCCCchHHHHH
Q 048083 140 ESDDDLNNNSESINTFKERILEICGGLPLHISLL 173 (692)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 173 (692)
+. . --.+....+++.++|.|..+.-+
T Consensus 178 ~~-----~---~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 178 GV-----K---ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp TC-----C---BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CC-----C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 21 1 11345677889999999855433
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=2.2e-06 Score=87.70 Aligned_cols=80 Identities=19% Similarity=0.139 Sum_probs=49.4
Q ss_pred CCcceEEEEeecCCCCC----------CCChhhhccccccceeeccCCCccccCccccCCCCCeEEecCCccce-ecChh
Q 048083 360 RGLVLLTVLDLEGVYKP----------KLSDHVIGKLLHLSYLGLRSTFIDSLPNSVGNLRYLETLDVKHTKLR-YLPDS 428 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~----------~l~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~ 428 (692)
.++++|+.|.+.+.... .+.. ++..+++|+.|.++++.-..++. +. +++|++|++..|.+. .....
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHH
Confidence 56677777777654321 1222 25667888888887763234444 33 788888888877665 22223
Q ss_pred hh--ccccCceeeccc
Q 048083 429 IW--KAKKLQHLYLNW 442 (692)
Q Consensus 429 ~~--~l~~L~~L~l~~ 442 (692)
+. .+++|++|+|+.
T Consensus 213 l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHSBCTTCCEEEEEC
T ss_pred HHHccCCCCcEEEEec
Confidence 33 678888887753
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.10 E-value=1e-05 Score=84.47 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=65.2
Q ss_pred ccCCcceEEeeeccCCccccCCCCCCCCccEEEEccccccccc-cccCccCccceeeeeccCCCCCchhhhhcCCCCCee
Q 048083 506 RSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALRMFSA-KTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNIL 584 (692)
Q Consensus 506 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 584 (692)
.|.+|+++.+... ........+..+++|+.+.+......++. .|... .+|+++.|..+ ++......|.+|.+|+.+
T Consensus 263 ~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c-~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 263 SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSRITELPESVFAGC-ISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ecccccEEecccc-cceecCcccccccccccccCCCcccccCceeecCC-CCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 3457887777554 33445566778888888888765544443 34445 78888888654 444455678888888888
Q ss_pred eecCCccCccEEEEecCCCCcccEEEecc
Q 048083 585 RIIGEAYEGKKMTCQAGGFPQLRVLKLWN 613 (692)
Q Consensus 585 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 613 (692)
.+..+ ... .-...+.+|++|+.+.+.+
T Consensus 340 ~ip~s-v~~-I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 340 AIPSS-VTK-IPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp EECTT-CCB-CCGGGGTTCTTCCEEEESS
T ss_pred EECcc-cCE-EhHhHhhCCCCCCEEEECC
Confidence 88643 211 0012345677888887765
No 166
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=2.7e-06 Score=76.27 Aligned_cols=81 Identities=7% Similarity=0.011 Sum_probs=46.0
Q ss_pred CcceEEeeeccCCccccCCCCCCCCccEEEEccccccccccccCcc------CccceeeeeccC-CCCCchhhhhcCCCC
Q 048083 509 RLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALRMFSAKTSSFP------RNLKIVTLSMSR-LYWDPMEALEKLCHL 581 (692)
Q Consensus 509 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~~~~~l~------~~L~~L~L~~~~-l~~~~~~~l~~l~~L 581 (692)
+|++|++++|.+++.....+..+++|++|+|++|.......+..+. ++|++|+|++|. +++..+..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 6777777777766666666666677777777766532222222221 246666666663 555455555555555
Q ss_pred CeeeecCC
Q 048083 582 NILRIIGE 589 (692)
Q Consensus 582 ~~L~l~~~ 589 (692)
+.|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555443
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.02 E-value=2.9e-05 Score=80.98 Aligned_cols=293 Identities=11% Similarity=0.050 Sum_probs=158.6
Q ss_pred cCCccccCCc-ccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCC---CCCCChhhhccccccceeecc
Q 048083 320 IPSSFLDRSC-HLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVY---KPKLSDHVIGKLLHLSYLGLR 395 (692)
Q Consensus 320 ~~~~~~~~~~-~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~---~~~l~~~~~~~l~~L~~L~l~ 395 (692)
+.+..|.+++ .|+++.+-+.- ..+-...| .+|.+|+.+.+..+. ++.+...+|..+..|+.+.+.
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~sv---------t~Ig~~AF--~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~ 122 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDTV---------TEIGSNAF--YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL 122 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTTC---------CEECTTTT--TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG
T ss_pred cCHhhccCCCCcCEEEEECCCe---------eEEhHHHh--hCCccCceEeecCCCCCeeeEechhhchhcccceeeccC
Confidence 4455566664 57887775432 22456678 888888888887653 566777668888888887776
Q ss_pred CCCccccC-ccccCCCCCeEEecCCccceecC-hhhhccccCceeecccccccccccccCCCcccccccccccCCCcccc
Q 048083 396 STFIDSLP-NSVGNLRYLETLDVKHTKLRYLP-DSIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSLFN 473 (692)
Q Consensus 396 ~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~~~ 473 (692)
.+ +..++ ..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ ...+.........|+.+ .+......-
T Consensus 123 ~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i---~ip~~~~~i 196 (394)
T 4gt6_A 123 DS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQI---HIPAKVTRI 196 (394)
T ss_dssp TT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEE---EECTTCCEE
T ss_pred Cc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEE---EECCccccc
Confidence 53 44444 34677888888888644 33333 35667777777777543 22222222222333332 222211000
Q ss_pred cccccccccccccccccccchhhHH-HH-----------HHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcc
Q 048083 474 QTFDFTKLASLRKLGVKCYSQRVID-SI-----------AELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRG 541 (692)
Q Consensus 474 ~~~~l~~l~~L~~L~l~~~~~~~~~-~l-----------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~ 541 (692)
-...+..+.++.............. .+ .... .+..+..+.+-. .........+..+.+|+.+.+..
T Consensus 197 ~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 197 GTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYP-SQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp CTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC-TTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCT
T ss_pred ccchhhhccccceecccccccccccceeecccccccccccccc-cccccceEEcCC-cceEcccceeeecccccEEeccc
Confidence 0002333333333222111000000 00 0000 001222222211 12223445688889999999876
Q ss_pred ccccc-cccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEE-EEecCCCCcccEEEeccCCCCcE
Q 048083 542 ALRMF-SAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKM-TCQAGGFPQLRVLKLWNLSSLEE 619 (692)
Q Consensus 542 ~~~~~-p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~ 619 (692)
....+ ...+... .+|+.+.+.. .+.......|.++.+|+.+.+..+ +. .+ ...+.+|.+|+.+.|-. +++.
T Consensus 275 ~~~~I~~~aF~~c-~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~C~~L~~i~ip~--sv~~ 347 (394)
T 4gt6_A 275 SVVSIGTGAFMNC-PALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT--QILDDAFAGCEQLERIAIPS--SVTK 347 (394)
T ss_dssp TCCEECTTTTTTC-TTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEECT--TCCB
T ss_pred ccceecCcccccc-cccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc--EehHhHhhCCCCCCEEEECc--ccCE
Confidence 55333 3344555 8899999863 455555667889999999999743 11 11 12345788999998853 3555
Q ss_pred EEe-cCCCccccceeecccc
Q 048083 620 WTV-QEAAMPRLRELEIRSC 638 (692)
Q Consensus 620 l~~-~~~~~~~L~~L~l~~c 638 (692)
+.. ....+++|+.+++.+.
T Consensus 348 I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 348 IPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCGGGGTTCTTCCEEEESSC
T ss_pred EhHhHhhCCCCCCEEEECCc
Confidence 532 2335678888888763
No 168
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=1.5e-05 Score=80.74 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=78.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc--cchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh-
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD--AKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL- 81 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L- 81 (692)
.+.|+|++|+||||+|+++++. +........++.+... .... ..+.+.+.+.... ..+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~----------------~~~~ 104 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGID-VVRNQIKHFAQKK----------------LHLP 104 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHH-HHHTHHHHHHHBC----------------CCCC
T ss_pred eEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChH-HHHHHHHHHHhcc----------------ccCC
Confidence 4889999999999999999988 4322222223333221 1211 1111111111000 011
Q ss_pred ccccEEEEEeCCCCcc--ccccc-----CCCCc---------------c-cccCCccccCCCCHHHHHHHHHhhcccccc
Q 048083 82 KEISYLIVVEDVETPQ--VCNPN-----NIPPE---------------A-EAAGPTLHLSRLNKEESWKLLLKKVPVATA 138 (692)
Q Consensus 82 ~~k~~LlVLDdv~~~~--~~~~~-----~~~~~---------------~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 138 (692)
.+++.+||+||++... ..+.+ ..+.. + ......+++.+++.++..+++...+...
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~-- 182 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLE-- 182 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH--
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHc--
Confidence 3458899999998732 22222 11221 0 0111246899999999999998876332
Q ss_pred ccCccccCCCchhHHHHHHHHHHHhCCCch-HHHHHhhh
Q 048083 139 AESDDDLNNNSESINTFKERILEICGGLPL-HISLLGGL 176 (692)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~g~~ 176 (692)
+- . --.+....+++.++|.|. |+..+...
T Consensus 183 -~~------~--~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 183 -DV------K--YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp -TC------C--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CC------C--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 21 1 113456788999999994 45555433
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.95 E-value=3.3e-05 Score=78.21 Aligned_cols=232 Identities=14% Similarity=0.058 Sum_probs=112.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhh---hccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETL---VEASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~l~~~ 80 (692)
..|.|+|++|+|||++|+++++. .... .++++........++...+...+..... .+...-.......+...
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~ 113 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPA 113 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHH
Confidence 46789999999999999999987 3222 2234333322222222211110110000 00111112233334444
Q ss_pred hccccEEEEEeCCCCccccc----cc----------CCCCc-ccccCCccccCCCCHHHHHHHHHhhccccccccCcccc
Q 048083 81 LKEISYLIVVEDVETPQVCN----PN----------NIPPE-AEAAGPTLHLSRLNKEESWKLLLKKVPVATAAESDDDL 145 (692)
Q Consensus 81 L~~k~~LlVLDdv~~~~~~~----~~----------~~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 145 (692)
+...++-+|.++......+. .+ .+... ....+..+++++++.+|..+++...+... +.
T Consensus 114 l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~---~~---- 186 (324)
T 1hqc_A 114 MEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL---GV---- 186 (324)
T ss_dssp HHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTT---TC----
T ss_pred HHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhc---CC----
Confidence 44444444433322111110 00 00000 11123456899999999999988876332 21
Q ss_pred CCCchhHHHHHHHHHHHhCCCchHHHHHhhhhc------CC-C--hHHHHHHHHHhcCCCCCCCCCccchhHHhhhcCCC
Q 048083 146 NNNSESINTFKERILEICGGLPLHISLLGGLLS------TK-E--AKYWSKVIEHADNSRSGSGTGSGLKPFFLYVGMFP 216 (692)
Q Consensus 146 ~~~~~~~~~~~~~i~~~~~glPLal~~~g~~l~------~~-~--~~~w~~~l~~l~~~~s~~~L~~~~k~~fl~~a~f~ 216 (692)
.--.+....+++++.|.|-.+.-+...+. +. . .+....++.... .....+++..+..+..+....
T Consensus 187 ----~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~--~~~~~l~~~e~~~i~~~~~~~ 260 (324)
T 1hqc_A 187 ----RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG--LDELGLEKRDREILEVLILRF 260 (324)
T ss_dssp ----CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT--CCTTCCCHHHHHHHHHHHHHS
T ss_pred ----CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--ccccCCCHHHHHHHHHHHHHh
Confidence 11235567889999999987765543321 11 1 445555555442 234456666667776665443
Q ss_pred CCCccchhhHHHHHHhcCCCCCchHHHHHHHHHH-HHhccceeee
Q 048083 217 RGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFEE-LVIRNLIQVT 260 (692)
Q Consensus 217 ~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~-L~~~sLi~~~ 260 (692)
.+..+....+.... | .........++. +++.++++..
T Consensus 261 ~g~~~~~~~~a~~l---g----i~~~tl~~~l~~~~i~~~li~~~ 298 (324)
T 1hqc_A 261 GGGPVGLATLATAL---S----EDPGTLEEVHEPYLIRQGLLKRT 298 (324)
T ss_dssp CSSCCCHHHHHHHT---T----SCHHHHHHHTHHHHHHTTSEEEE
T ss_pred cCCCchHHHHHHHh---C----CCHHHHHHHHhHHHHHhcchhcC
Confidence 44333344333321 1 123333443444 6677777643
No 170
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.89 E-value=6e-06 Score=75.97 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=54.2
Q ss_pred CCcccceEEEecC-ccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCC-----CChhhhccccccceeeccCCCcc
Q 048083 327 RSCHLRTYVAFDN-RIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPK-----LSDHVIGKLLHLSYLGLRSTFID 400 (692)
Q Consensus 327 ~~~~lr~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~l~~L~~L~l~~~~i~ 400 (692)
..+.|++|.+.++ .+... -...+...+ ...++|++|+|++|.+.. +... +...+.|++|+|++|.++
T Consensus 34 ~~~~L~~L~L~~n~~i~~~----g~~~l~~~L--~~~~~L~~L~Ls~n~i~~~g~~~l~~~-L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVP----TLKACAEAL--KTNTYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp TCTTCCEEECTTCTTCCHH----HHHHHHHHH--TTCCSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCSSCCC
T ss_pred cCCCCCEEEecCCCCCCHH----HHHHHHHHH--HhCCCcCEEECcCCCCChHHHHHHHHH-HHhCCCcCEEECcCCcCC
Confidence 4555666665554 32111 111233444 455566666666665542 1222 334455666666665553
Q ss_pred c-----cCccccCCCCCeEEec--CCcccee-----cChhhhccccCceeecccccc
Q 048083 401 S-----LPNSVGNLRYLETLDV--KHTKLRY-----LPDSIWKAKKLQHLYLNWIHS 445 (692)
Q Consensus 401 ~-----lp~~~~~l~~L~~L~L--~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~ 445 (692)
. +...+...+.|++|+| ++|.+.. +...+...++|++|++++|.+
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3 3334445555666666 4454441 233344445566666555543
No 171
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.78 E-value=4.4e-05 Score=75.79 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhccc-------ccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFA-------KRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSS 76 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~-------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 76 (692)
..+.|+|++|.|||++|++++++ +....+ ..+.++.....+...++..|++++.+... ...........
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~--~~~~~~~~L~~ 121 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL--CGDISLEALNF 121 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC----CCCCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC--CchHHHHHHHH
Confidence 46789999999999999999998 432211 13455555666778899999999976432 11112222233
Q ss_pred HHHHh---ccccEEEEEeCCCCc
Q 048083 77 LTTLL---KEISYLIVVEDVETP 96 (692)
Q Consensus 77 l~~~L---~~k~~LlVLDdv~~~ 96 (692)
+...+ .++++++|||+++..
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHhhhccCCceEEEEecHHHh
Confidence 32322 456899999999874
No 172
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.70 E-value=1.1e-05 Score=74.15 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=71.7
Q ss_pred hhHHHhhhccCCcceEEEEeecCC-CCCC-----CChhhhccccccceeeccCCCccc-----cCccccCCCCCeEEecC
Q 048083 350 STFLDKIISNRGLVLLTVLDLEGV-YKPK-----LSDHVIGKLLHLSYLGLRSTFIDS-----LPNSVGNLRYLETLDVK 418 (692)
Q Consensus 350 ~~~~~~~~~~~~~~~L~~L~L~~~-~~~~-----l~~~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~L~ 418 (692)
...+...+ ...+.|+.|+|++| .+.. +... +...++|++|+|++|.++. +...+...+.|++|+|+
T Consensus 25 ~~~l~~~l--~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 25 EETLKRIQ--NNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHHHHHH--TTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHH--hcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 34567778 88999999999999 8762 3344 6677899999999998753 44455667889999999
Q ss_pred Ccccee-----cChhhhccccCceeec--cccccc
Q 048083 419 HTKLRY-----LPDSIWKAKKLQHLYL--NWIHSA 446 (692)
Q Consensus 419 ~~~l~~-----lp~~~~~l~~L~~L~l--~~~~~~ 446 (692)
+|.|.. +...+...++|++|++ ++|.+.
T Consensus 102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 102 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 997773 4566777888999999 667654
No 173
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.67 E-value=3.5e-05 Score=74.61 Aligned_cols=79 Identities=23% Similarity=0.209 Sum_probs=54.0
Q ss_pred CCcceEEEEeecCCCCCCCCh--hhhccccccceeeccCCCccccCccccCCC--CCeEEecCCccce-ecCh-------
Q 048083 360 RGLVLLTVLDLEGVYKPKLSD--HVIGKLLHLSYLGLRSTFIDSLPNSVGNLR--YLETLDVKHTKLR-YLPD------- 427 (692)
Q Consensus 360 ~~~~~L~~L~L~~~~~~~l~~--~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~L~~~~l~-~lp~------- 427 (692)
..+++|+.|+|++|.+..++. ..+..+++|++|+|++|.+..+. .+..+. +|++|+|++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 567888888888888875542 22667888888888888877663 244444 7888888888766 3442
Q ss_pred hhhccccCceee
Q 048083 428 SIWKAKKLQHLY 439 (692)
Q Consensus 428 ~~~~l~~L~~L~ 439 (692)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245667776664
No 174
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.57 E-value=0.00025 Score=73.39 Aligned_cols=77 Identities=12% Similarity=0.089 Sum_probs=36.5
Q ss_pred CcceEEeeeccCCccccCCCCCCCCccEEEEccccccccc-cccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeec
Q 048083 509 RLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALRMFSA-KTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRII 587 (692)
Q Consensus 509 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p~-~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~ 587 (692)
+|+.+.+..+ .+......+..+.+|+.+.+......++. .+... .+|+++.+.++.+.......|.++.+|+.+.+.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c-~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGC-SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTC-TTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccc-cccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 5555555433 33333444555555555555443322222 22333 555555555554444444445555555555553
No 175
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=0.00011 Score=67.64 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|+|.+|+|||++|+++++.
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999987
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.48 E-value=0.00011 Score=68.53 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV 41 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 41 (692)
+.|.|+|.+|+|||+||+++++. .......++|+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 57899999999999999999998 4443334556554
No 177
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=0.0002 Score=72.38 Aligned_cols=140 Identities=12% Similarity=0.089 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc--chHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA--KFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL 81 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 81 (692)
..+.|+|++|+||||+|+++++. +........++.+.... ....+. ......... . ...
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~----------~~~ 107 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGINVIR-EKVKEFART------K----------PIG 107 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHHTTH-HHHHHHHHS------C----------CGG
T ss_pred CeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchHHHH-HHHHHHHhh------C----------CcC
Confidence 35899999999999999999988 43222222344333221 111100 000000000 0 001
Q ss_pred ccccEEEEEeCCCCcc--ccccc-----CCCCc---------------c-cccCCccccCCCCHHHHHHHHHhhcccccc
Q 048083 82 KEISYLIVVEDVETPQ--VCNPN-----NIPPE---------------A-EAAGPTLHLSRLNKEESWKLLLKKVPVATA 138 (692)
Q Consensus 82 ~~k~~LlVLDdv~~~~--~~~~~-----~~~~~---------------~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 138 (692)
.+++.+||+||++... ..+.+ ..+.. + ......+++.+++.++..+++...+...
T Consensus 108 ~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~-- 185 (327)
T 1iqp_A 108 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE-- 185 (327)
T ss_dssp GCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTT--
T ss_pred CCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhc--
Confidence 2567788999987642 11111 11111 0 0001245889999999999998776332
Q ss_pred ccCccccCCCchhHHHHHHHHHHHhCCCchHHHHH
Q 048083 139 AESDDDLNNNSESINTFKERILEICGGLPLHISLL 173 (692)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 173 (692)
+- .--.+....+++.++|.|..+..+
T Consensus 186 -~~--------~~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 186 -GL--------ELTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp -TC--------EECHHHHHHHHHHHTTCHHHHHHH
T ss_pred -CC--------CCCHHHHHHHHHHCCCCHHHHHHH
Confidence 21 112345678888999998755443
No 178
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.43 E-value=0.00022 Score=65.06 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|+|++|+||||||+++++.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999998
No 179
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.33 E-value=0.00027 Score=69.44 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEe--cCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRV--RGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLL 81 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 81 (692)
+++.|+|++|+||||||.+++.. .-..++|++. .+..+. ...+.++....+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~------------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG------------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT------------------CBCCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh------------------hhcCHHHHHHHHHHHH
Confidence 46789999999999999999875 1124678877 222110 0123455566667777
Q ss_pred ccccEEEEEeCCCCc
Q 048083 82 KEISYLIVVEDVETP 96 (692)
Q Consensus 82 ~~k~~LlVLDdv~~~ 96 (692)
...+ +||+|++...
T Consensus 181 ~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 181 LQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHCS-EEEEECCTTT
T ss_pred hhCC-EEEEeccccc
Confidence 6667 9999998753
No 180
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.00021 Score=69.15 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=43.0
Q ss_pred ccccccceeeccCCCccccC---ccccCCCCCeEEecCCccceecChhhhccc--cCceeeccccccc
Q 048083 384 GKLLHLSYLGLRSTFIDSLP---NSVGNLRYLETLDVKHTKLRYLPDSIWKAK--KLQHLYLNWIHSA 446 (692)
Q Consensus 384 ~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~--~L~~L~l~~~~~~ 446 (692)
.++++|+.|+|++|.+..++ ..+..+++|+.|+|++|.++.+ ..+..+. +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 35677888888888776543 4456788888888888877765 2344444 7888888887765
No 181
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.22 E-value=0.0011 Score=68.39 Aligned_cols=285 Identities=9% Similarity=0.014 Sum_probs=135.7
Q ss_pred ccCCcccceEEEecCccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCCCCChhhhccccccceeeccCCCccccCc
Q 048083 325 LDRSCHLRTYVAFDNRIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKPKLSDHVIGKLLHLSYLGLRSTFIDSLPN 404 (692)
Q Consensus 325 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~l~~L~~L~l~~~~i~~lp~ 404 (692)
|....+++++.+-..- ..+-...| ..|.+|+.+.|..+ ++.+...+|.++ +|..+.+.. .+..++.
T Consensus 42 ~~~~~~i~~v~ip~~v---------t~Ig~~aF--~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~ 107 (379)
T 4h09_A 42 YKDRDRISEVRVNSGI---------TSIGEANF--NSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGD 107 (379)
T ss_dssp GGGGGGCSEEEECTTE---------EEECTTTT--TTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECT
T ss_pred cccccCCEEEEeCCCc---------cChHHHHh--hCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEecc
Confidence 3366778888775443 22456678 88888888888643 667777767776 566666643 3555554
Q ss_pred cccCCCCCeEEecCCccceecCh-hhhccccCceeecccccccccccccCCCcccccccccccCCCcc----------cc
Q 048083 405 SVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHSAISWLNFSSLNNLQTLWGLSMGDDSL----------FN 473 (692)
Q Consensus 405 ~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~i~~l~~L~~L~~~~~~~~~~----------~~ 473 (692)
..-...+|+.+.+..+ ++.+.. .+.++ +|..+.+..+-..-....+..+.+++............ ..
T Consensus 108 ~aF~~~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (379)
T 4h09_A 108 YVFQGTDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKT 185 (379)
T ss_dssp TTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSS
T ss_pred ceeccCCcccccCCCc-cccccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeecccceecccccc
Confidence 3323347888877654 333332 23332 44444443321111112223333333331111100000 00
Q ss_pred cccccccccccccccccccch-hhHHHHHHHhhccCCcceEEeeeccCCccccCCCCCCCCccEEEEcccccccc-cccc
Q 048083 474 QTFDFTKLASLRKLGVKCYSQ-RVIDSIAELVSRSTRLQSLKLVYAWRDDYSDIPFKAQANLQELYLRGALRMFS-AKTS 551 (692)
Q Consensus 474 ~~~~l~~l~~L~~L~l~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~p-~~~~ 551 (692)
....+....++..+.+..... .....+ ..+.+|+.+.+..+ ........+..+.+|+.+.+......+. ..+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f----~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~ 260 (379)
T 4h09_A 186 ILESYPAAKTGTEFTIPSTVKTVTAYGF----SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQ 260 (379)
T ss_dssp EEEECCTTCCCSEEECCTTCCEECTTTT----TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTT
T ss_pred eeccccccccccccccccceeEEeeccc----ccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccc
Confidence 000111222222222221100 000111 12335666655443 3333445566677777777765443332 2333
Q ss_pred CccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccCccEEEEecCCCCcccEEEeccCCCCcEEEec-CCCcccc
Q 048083 552 SFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYEGKKMTCQAGGFPQLRVLKLWNLSSLEEWTVQ-EAAMPRL 630 (692)
Q Consensus 552 ~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L 630 (692)
.. .+|+.+.+..+ +.......+.++++|+.+.+.++.+.. .-...+.++.+|+.+.|- .+++.+... ...+++|
T Consensus 261 ~~-~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp--~~l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 261 NC-TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLP--TALKTIQVYAFKNCKAL 335 (379)
T ss_dssp TC-TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTC
T ss_pred ee-ehhcccccccc-ceeccccccccccccccccccccccce-ehhhhhcCCCCCCEEEcC--ccccEEHHHHhhCCCCC
Confidence 44 66777777543 333344556777788888776544321 001133456777777764 235554322 1234455
Q ss_pred ceeec
Q 048083 631 RELEI 635 (692)
Q Consensus 631 ~~L~l 635 (692)
+.+.+
T Consensus 336 ~~i~i 340 (379)
T 4h09_A 336 STISY 340 (379)
T ss_dssp CCCCC
T ss_pred CEEEE
Confidence 55554
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.20 E-value=0.00041 Score=67.58 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.|+|++|+|||++|+++++.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999987
No 183
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.15 E-value=0.00057 Score=70.53 Aligned_cols=50 Identities=14% Similarity=0.032 Sum_probs=34.0
Q ss_pred ccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHh
Q 048083 114 TLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLG 174 (692)
Q Consensus 114 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g 174 (692)
.+++.+++.++..+++...+... +- .--.+....+++.++|.|..+..+.
T Consensus 172 ~i~~~~l~~~~~~~~l~~~~~~~---~~--------~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 172 QFHLKALDVEQIRHQLEHILNEE---HI--------AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHH---TC--------CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred EeeCCCCCHHHHHHHHHHHHHHc---CC--------CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 45889999999999998765322 21 1113446778899999997665443
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.09 E-value=0.00087 Score=70.50 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIR 40 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 40 (692)
.-+.|+|.+|+||||||+++++. ....+...-++.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~ 165 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMY 165 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEE
Confidence 45789999999999999999998 656664433333
No 185
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.06 E-value=0.0036 Score=63.40 Aligned_cols=128 Identities=13% Similarity=0.025 Sum_probs=71.0
Q ss_pred CccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhhh------hcCCC---hH
Q 048083 113 PTLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGGL------LSTKE---AK 183 (692)
Q Consensus 113 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~------l~~~~---~~ 183 (692)
..+++++++.++..+++.+.+... + ..--.+....+++.+.|.|-.+.-+... +.+.. .+
T Consensus 177 ~~i~l~~~~~~e~~~il~~~~~~~---~--------~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~ 245 (338)
T 3pfi_A 177 MQFRLEFYKDSELALILQKAALKL---N--------KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEK 245 (338)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHT---T--------CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred EEeeCCCcCHHHHHHHHHHHHHhc---C--------CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHH
Confidence 456999999999999998776332 1 1112345677888889998544433222 11122 44
Q ss_pred HHHHHHHHhcCCCCCCCCCccchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHH-HHHhccceeeee
Q 048083 184 YWSKVIEHADNSRSGSGTGSGLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFE-ELVIRNLIQVTK 261 (692)
Q Consensus 184 ~w~~~l~~l~~~~s~~~L~~~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~-~L~~~sLi~~~~ 261 (692)
....++.... .+...+....++.+..++.. .+..+....+.... | .+.....+.++ .|++.++|....
T Consensus 246 ~~~~~~~~~~--~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~l---g----~~~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 246 RANEALNSLG--VNELGFDAMDLRYLELLTAA-KQKPIGLASIAAAL---S----EDENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp HHHHHHHHHT--CCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHT---T----CCHHHHHHTTHHHHHHTTSEEEET
T ss_pred HHHHHHHHhC--CcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHh---C----CCHHHHHHHHhHHHHHcCceecCC
Confidence 4455554432 22334444445555555544 44444444443321 2 23444555666 788899998654
No 186
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.04 E-value=0.0033 Score=65.98 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
..|.|+|.+|+||||+|+.+++. ....| +.++......+-++.+..... .....+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~ir~~~~~a~------------------~~~~~~ 105 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKEIREAIERAR------------------QNRNAG 105 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHHHHHHHHHHH------------------HHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHHHHHHHHHHH------------------HhhhcC
Confidence 46899999999999999999988 43333 333222111111111111100 001135
Q ss_pred ccEEEEEeCCCCcc--ccccc--CCCCc------c-------------cccCCccccCCCCHHHHHHHHHhhcccccccc
Q 048083 84 ISYLIVVEDVETPQ--VCNPN--NIPPE------A-------------EAAGPTLHLSRLNKEESWKLLLKKVPVATAAE 140 (692)
Q Consensus 84 k~~LlVLDdv~~~~--~~~~~--~~~~~------~-------------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 140 (692)
++.+|++|+++... +.+.+ .+..+ + ..-...+.+.+++.++-.+++.+..... .
T Consensus 106 ~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~---~ 182 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK---T 182 (447)
T ss_dssp CCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCT---T
T ss_pred CCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHH---h
Confidence 67899999998732 22222 00000 0 0001145889999999999988775321 0
Q ss_pred CccccCCCchhHHHHHHHHHHHhCCCchHHH
Q 048083 141 SDDDLNNNSESINTFKERILEICGGLPLHIS 171 (692)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 171 (692)
..... ....--.+....+++.++|.+-.+.
T Consensus 183 ~~~~~-~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 183 RGYGG-QDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TSSTT-SSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred hhhcc-ccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 00000 0111223456677788888765433
No 187
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.03 E-value=0.0011 Score=66.56 Aligned_cols=134 Identities=12% Similarity=0.092 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhh-cccc-cceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHH--
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKR-HFAK-RAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTL-- 80 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~-~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-- 80 (692)
.+.|+|++|+|||++|+++++. +.. .+.. .+.++.+...... ...+........
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 97 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGID--------------------VVRHKIKEFARTAP 97 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCTT--------------------TSSHHHHHHHHSCC
T ss_pred eEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccChH--------------------HHHHHHHHHHhcCC
Confidence 4789999999999999999987 321 1211 2223322211100 011111111111
Q ss_pred h-ccccEEEEEeCCCCcc--ccccc-----CCCCc------c----------cccCCccccCCCCHHHHHHHHHhhcccc
Q 048083 81 L-KEISYLIVVEDVETPQ--VCNPN-----NIPPE------A----------EAAGPTLHLSRLNKEESWKLLLKKVPVA 136 (692)
Q Consensus 81 L-~~k~~LlVLDdv~~~~--~~~~~-----~~~~~------~----------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 136 (692)
+ .+++.++|+||++... ..+.+ ..+.. . ......+++.+++.++..+++...+...
T Consensus 98 ~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~ 177 (319)
T 2chq_A 98 IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKE 177 (319)
T ss_dssp SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 1 2567899999998632 11222 11222 0 0011245888999999988888765332
Q ss_pred ccccCccccCCCchhHHHHHHHHHHHhCCCchHHH
Q 048083 137 TAAESDDDLNNNSESINTFKERILEICGGLPLHIS 171 (692)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 171 (692)
+- .--.+....+++.++|.+..+.
T Consensus 178 ---~~--------~i~~~~l~~l~~~~~G~~r~~~ 201 (319)
T 2chq_A 178 ---GV--------KITEDGLEALIYISGGDFRKAI 201 (319)
T ss_dssp ---CC--------CBCHHHHHHHHHTTTTCHHHHH
T ss_pred ---CC--------CCCHHHHHHHHHHcCCCHHHHH
Confidence 21 1113445677788888876543
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.03 E-value=0.0015 Score=63.88 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.|+|.+|+|||++|+++++.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999999987
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.00 E-value=0.00039 Score=63.60 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|+|.+|+|||++|+++++.
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999887
No 190
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.00 E-value=0.00051 Score=60.27 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
+.++|+|..|+||||||+.++...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999973
No 191
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.99 E-value=0.0017 Score=61.18 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=48.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhh-------hhccCCCh---hHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDET-------LVEASAPE---ADL 73 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~---~~~ 73 (692)
.+++|+|.+|+||||||+.++.. .-..++|++.....+...+.. +.+...... ........ .+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLL-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 58999999999999999999871 123467777665444443332 333221100 00011112 223
Q ss_pred HHHHHHHhccccEEEEEeCCCC
Q 048083 74 VSSLTTLLKEISYLIVVEDVET 95 (692)
Q Consensus 74 ~~~l~~~L~~k~~LlVLDdv~~ 95 (692)
...++..++.+.-+||+|.+..
T Consensus 95 ~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhhcCCCEEEEcCcHH
Confidence 4444444444577999997654
No 192
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.89 E-value=0.0025 Score=64.24 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhh---ccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLV---EASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 80 (692)
+++.|.|.+|+||||||.+++.. ....=..++|++....++.. .++.+...... ....+.++....+...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 58999999999999999999987 33221236688766555433 34444332110 1334556666666655
Q ss_pred hc-cccEEEEEeCCCC
Q 048083 81 LK-EISYLIVVEDVET 95 (692)
Q Consensus 81 L~-~k~~LlVLDdv~~ 95 (692)
++ .+.-++|+|.+..
T Consensus 135 ~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHTSCCSEEEEECTTT
T ss_pred hhhcCCCeEEehHhhh
Confidence 54 4556899998764
No 193
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.85 E-value=0.00094 Score=71.95 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHH--HHHh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSL--TTLL 81 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l--~~~L 81 (692)
+.+.|+|++|+||||+|+++++. .. +. ++.++.+..... ............. .......... ....
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~--l~--~~-~i~in~s~~~~~-~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~ 145 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE--LG--YD-ILEQNASDVRSK-TLLNAGVKNALDN------MSVVGYFKHNEEAQNL 145 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH--TT--CE-EEEECTTSCCCH-HHHHHTGGGGTTB------CCSTTTTTC----CCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEeCCCcchH-HHHHHHHHHHhcc------ccHHHHHhhhhhhhhc
Confidence 68899999999999999999998 31 11 223333332221 2222211111110 0000000000 0012
Q ss_pred ccccEEEEEeCCCCcccc-----ccc-----CCCCc---------------ccccCCccccCCCCHHHHHHHHHhhcccc
Q 048083 82 KEISYLIVVEDVETPQVC-----NPN-----NIPPE---------------AEAAGPTLHLSRLNKEESWKLLLKKVPVA 136 (692)
Q Consensus 82 ~~k~~LlVLDdv~~~~~~-----~~~-----~~~~~---------------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 136 (692)
..++.+||+|+|+....- ..+ ..... -......+++++++.++..+.+...+...
T Consensus 146 ~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~ 225 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIRE 225 (516)
T ss_dssp STTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 356789999999763211 111 00000 00112235888999999999887766432
Q ss_pred ccccCccccCCCchhHHHHHHHHHHHhCC-CchHHHHHhh
Q 048083 137 TAAESDDDLNNNSESINTFKERILEICGG-LPLHISLLGG 175 (692)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLal~~~g~ 175 (692)
+- ... .+....|++.++| ++-|+.++..
T Consensus 226 ---~~-----~i~---~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 226 ---KF-----KLD---PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp ---TC-----CCC---TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred ---CC-----CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 21 111 1235678888988 5555665543
No 194
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.83 E-value=0.00072 Score=64.78 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=28.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEec
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVR 42 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 42 (692)
.+.|.|+|.+|+||||+|+++++. .......+.|++..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLG 89 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence 357899999999999999999988 44333345566654
No 195
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.81 E-value=0.001 Score=65.79 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.++|++|+|||+||+++++.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.80 E-value=0.0096 Score=62.60 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.|+|++|+|||+||+++++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999987
No 197
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.76 E-value=0.00059 Score=67.41 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.|+|++|+|||++|+++++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45889999999999999999987
No 198
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0057 Score=62.28 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
=|.++|++|.|||.||++++++
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.61 E-value=0.0033 Score=62.52 Aligned_cols=70 Identities=19% Similarity=0.402 Sum_probs=41.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
+.|.|+|++|.|||+||+++++. .... ++.++. .++. ....+. ........+......
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~~----~~l~----~~~~g~-------~~~~~~~~f~~a~~~ 107 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG----PELL----TMWFGE-------SEANVREIFDKARQA 107 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEECH----HHHH----HHHHTT-------CTTHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEEh----HHHH----hhhcCc-------hHHHHHHHHHHHHhc
Confidence 46899999999999999999987 3322 333321 1221 111111 111223333444445
Q ss_pred ccEEEEEeCCCC
Q 048083 84 ISYLIVVEDVET 95 (692)
Q Consensus 84 k~~LlVLDdv~~ 95 (692)
.+.+|+||+++.
T Consensus 108 ~p~il~iDEid~ 119 (301)
T 3cf0_A 108 APCVLFFDELDS 119 (301)
T ss_dssp CSEEEEECSTTH
T ss_pred CCeEEEEEChHH
Confidence 679999999974
No 200
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.59 E-value=0.0045 Score=62.65 Aligned_cols=84 Identities=21% Similarity=0.216 Sum_probs=50.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhh---ccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLV---EASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 80 (692)
+++.|.|.+|+||||||.+++.. ....=..++|++....++... ++.+...... ....+.++....+...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 58999999999999999999887 332223578888766655321 3333321110 0222344444444444
Q ss_pred hc-cccEEEEEeCCC
Q 048083 81 LK-EISYLIVVEDVE 94 (692)
Q Consensus 81 L~-~k~~LlVLDdv~ 94 (692)
.+ .+--+||+|.+.
T Consensus 137 ~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 137 ARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHTCCSEEEEECGG
T ss_pred HhccCCCEEEEcCHH
Confidence 32 345589999865
No 201
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.57 E-value=0.0057 Score=62.13 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhh---ccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLV---EASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 80 (692)
+++.|.|.+|+||||||.+++.. ....=..++|++....++.. .++.+...... ....+.++....+...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 57899999999999999999887 43222357888877665532 13333321110 0233455666666655
Q ss_pred hc-cccEEEEEeCCCC
Q 048083 81 LK-EISYLIVVEDVET 95 (692)
Q Consensus 81 L~-~k~~LlVLDdv~~ 95 (692)
.+ .+--+||+|.+..
T Consensus 148 ~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HTTTCCSEEEEECTTT
T ss_pred HhcCCCCEEEEeChHH
Confidence 54 3456999998864
No 202
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.57 E-value=0.0023 Score=64.45 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+.|+|++|+||||||+++++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999999987
No 203
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.56 E-value=0.0023 Score=64.20 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.|+|++|+|||+||+++++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46889999999999999999987
No 204
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.47 E-value=0.011 Score=61.10 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.|+|.+|+|||++|+++++.
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999887
No 205
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0078 Score=62.21 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+=|.++|++|.|||.||++++++
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhc
Confidence 45789999999999999999998
No 206
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.42 E-value=0.01 Score=59.95 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=31.1
Q ss_pred ccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHH
Q 048083 114 TLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLL 173 (692)
Q Consensus 114 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 173 (692)
.+++.+++.++..+.+.... . .. .+.+..+++.++|.|..+..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~------~------~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV------T------MS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC------C------CC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred eeeCCCCCHHHHHHHHHHhc------C------CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 45889999999999887764 1 11 234567889999998655443
No 207
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.42 E-value=0.0055 Score=62.47 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=32.5
Q ss_pred ccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHH
Q 048083 114 TLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISL 172 (692)
Q Consensus 114 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 172 (692)
.+++.+++.++..+.+...+... +- . --++....|++.++|.|-.+..
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~---~~-----~---i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQE---NV-----K---CDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTT---TC-----C---CCHHHHHHHHHHTSSCHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHh---CC-----C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 45888999999999888765322 21 1 1134567888999999875443
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.40 E-value=0.0022 Score=55.90 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.|+|.+|+|||++|+++++.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999999999987
No 209
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.39 E-value=0.0053 Score=58.74 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhh----cccccceEEecCccchHHHHHHHHHHhhhhhh---hc----cCCChhH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKR----HFAKRAWIRVRGDAKFRDVLIDILQQIDDETL---VE----ASAPEAD 72 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~----~~~~~~~ 72 (692)
.+++|+|.+|+||||||+.++....... .-..++|++....++...+. .+++.+..... .. ...+..+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 5899999999999999999988521211 12457788766543433332 23333332110 00 1222222
Q ss_pred H---HHHHHHHhc-cccEEEEEeCCCC
Q 048083 73 L---VSSLTTLLK-EISYLIVVEDVET 95 (692)
Q Consensus 73 ~---~~~l~~~L~-~k~~LlVLDdv~~ 95 (692)
. ...+...+. .+.-+||+|.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 233444443 4677999998764
No 210
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.38 E-value=0.0012 Score=61.91 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=47.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKE 83 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 83 (692)
.++.|+|..|+||||+|..++.+ ....-..++.+....... ....+++.++............+..+.+.+.+..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred EEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 57889999999999999999888 433323344444332211 1122333333211100122334555555555544
Q ss_pred ccE-EEEEeCCC
Q 048083 84 ISY-LIVVEDVE 94 (692)
Q Consensus 84 k~~-LlVLDdv~ 94 (692)
.++ +||+|.+.
T Consensus 88 ~~~dvViIDEaQ 99 (223)
T 2b8t_A 88 DETKVIGIDEVQ 99 (223)
T ss_dssp TTCCEEEECSGG
T ss_pred CCCCEEEEecCc
Confidence 444 99999764
No 211
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.37 E-value=0.0037 Score=62.82 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.|+|++|+|||+||+++++.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999999999987
No 212
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.37 E-value=0.0081 Score=60.72 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhh---ccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLV---EASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 80 (692)
+++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++..... ....+.++....+...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 58999999999999999999877 33222347788876655432 23333321110 0223455555555544
Q ss_pred hc-cccEEEEEeCCCC
Q 048083 81 LK-EISYLIVVEDVET 95 (692)
Q Consensus 81 L~-~k~~LlVLDdv~~ 95 (692)
.+ .+.-+||+|.+..
T Consensus 135 ~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAA 150 (349)
T ss_dssp HTTTCCSEEEEECGGG
T ss_pred HhcCCCCEEEEcChHh
Confidence 43 3456999998653
No 213
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.32 E-value=0.011 Score=57.84 Aligned_cols=85 Identities=11% Similarity=0.147 Sum_probs=54.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcc--cccceEEecCccchHHHHHHHHHHhhhhhhhc---cCCChhHH-HHHHH
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHF--AKRAWIRVRGDAKFRDVLIDILQQIDDETLVE---ASAPEADL-VSSLT 78 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 78 (692)
++-|.|.+|+||||||.+++.. ....+ ..++|++....++.. .++.++.....- ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 6789999999999999999887 44443 236788877666542 255555432211 33445554 33332
Q ss_pred HH--h-ccccEEEEEeCCCCc
Q 048083 79 TL--L-KEISYLIVVEDVETP 96 (692)
Q Consensus 79 ~~--L-~~k~~LlVLDdv~~~ 96 (692)
.. + ..+.-+||+|-|...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 22 2 356789999988754
No 214
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.30 E-value=0.0028 Score=61.44 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.|+|.+|+||||+|+++++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999987
No 215
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.29 E-value=0.0024 Score=63.56 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchh-hcccccceEEe
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVK-RHFAKRAWIRV 41 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~-~~F~~~~wv~~ 41 (692)
+-|.|+|.+|+|||+||.++++. .. ..-..++++++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 56889999999999999999997 43 32223445543
No 216
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.23 E-value=0.012 Score=58.93 Aligned_cols=90 Identities=22% Similarity=0.306 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhc----ccccceEEecCccchHHHHHHHHHHhhhhhhh-------ccCCChh-
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRH----FAKRAWIRVRGDAKFRDVLIDILQQIDDETLV-------EASAPEA- 71 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~- 71 (692)
+++.|+|.+|+||||||.+++........ =..++|++....++...+.. +++.+...... ....+.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 58899999999999999999876322211 13478888777665555443 34444322110 0122223
Q ss_pred --HHHHHHHHHhc--cccEEEEEeCCC
Q 048083 72 --DLVSSLTTLLK--EISYLIVVEDVE 94 (692)
Q Consensus 72 --~~~~~l~~~L~--~k~~LlVLDdv~ 94 (692)
+....+...++ .+.-+||+|.+.
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 23444555554 356789999765
No 217
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.22 E-value=0.0021 Score=58.24 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|.|+|++|+||||+|+++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999987
No 218
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.22 E-value=0.0029 Score=62.84 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.|+|++|+||||+|+++++.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 56899999999999999999987
No 219
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.22 E-value=0.0026 Score=64.89 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.|+|++|+|||+||+++++.
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999998
No 220
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.22 E-value=0.0049 Score=61.50 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.|+|.+|+|||++|+++++.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 221
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.17 E-value=0.0023 Score=57.61 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999877
No 222
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.011 Score=60.30 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|+|+.|+||||+|+.++..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999885
No 223
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.12 E-value=0.01 Score=57.84 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|+|+|++|.||||||++++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999987
No 224
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.05 E-value=0.016 Score=58.56 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhh----cccccceEEecCccchHHHHHHHHHHhhhhhh---hc----cCCChh-
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKR----HFAKRAWIRVRGDAKFRDVLIDILQQIDDETL---VE----ASAPEA- 71 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~----~~~~~~- 71 (692)
.++.|+|.+|+||||||.+++....... .=..++|++....++...+.. +++.+..... .. ...+.+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~e~ 201 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTSEH 201 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCHHH
Confidence 5889999999999999999987622211 113477888777666555443 3344332110 00 111222
Q ss_pred --HHHHHHHHHhc---cccEEEEEeCCCC
Q 048083 72 --DLVSSLTTLLK---EISYLIVVEDVET 95 (692)
Q Consensus 72 --~~~~~l~~~L~---~k~~LlVLDdv~~ 95 (692)
+....+...++ .+.-+||+|.+..
T Consensus 202 ~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 202 QMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 23333444443 4566999997653
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.05 E-value=0.0097 Score=58.65 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|.+|+||||++..++..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999877
No 226
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.00 E-value=0.0032 Score=56.45 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999886
No 227
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.97 E-value=0.019 Score=57.62 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=53.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhh---------cc-----cccceEEecCccchHHHHHHHHHHhhhhhh------
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKR---------HF-----AKRAWIRVRGDAKFRDVLIDILQQIDDETL------ 63 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------ 63 (692)
+++.|+|.+|+||||||.+++....... .. ..++|++....++...+... ++.+.....
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLDNT 177 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHHTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhcCE
Confidence 5889999999999999999987522211 11 35788888776655555433 344432211
Q ss_pred -hccCCChhH---HHHHHHHHhcc--ccEEEEEeCCC
Q 048083 64 -VEASAPEAD---LVSSLTTLLKE--ISYLIVVEDVE 94 (692)
Q Consensus 64 -~~~~~~~~~---~~~~l~~~L~~--k~~LlVLDdv~ 94 (692)
-....+.++ ....+...++. +.-+||+|.+.
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 002223332 33445555543 45689999765
No 228
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.96 E-value=0.0035 Score=56.57 Aligned_cols=20 Identities=40% Similarity=0.690 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTV 23 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~ 23 (692)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 229
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.95 E-value=0.017 Score=57.13 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=46.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc-chHHHHHHHHHHhhhhhhhc-cCCChhHH-HHHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA-KFRDVLIDILQQIDDETLVE-ASAPEADL-VSSLTT 79 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~-~~~l~~ 79 (692)
-++|+|+|.+|+||||++..++.. .+..=..+.++...... ...+.+....+......... ...+...+ ...+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 368999999999999999999987 43321224455543211 11122233333333221111 11122222 233444
Q ss_pred HhccccEEEEEeCC
Q 048083 80 LLKEISYLIVVEDV 93 (692)
Q Consensus 80 ~L~~k~~LlVLDdv 93 (692)
.+..+.=++|+|-.
T Consensus 182 a~~~~~dvvIiDtp 195 (306)
T 1vma_A 182 ALARNKDVVIIDTA 195 (306)
T ss_dssp HHHTTCSEEEEEEC
T ss_pred HHhcCCCEEEEECC
Confidence 45555558888843
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.94 E-value=0.01 Score=57.18 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|+|.+|+||||||++++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999987
No 231
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.93 E-value=0.021 Score=54.02 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEec
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVR 42 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 42 (692)
.+++|.|.+|+|||||++.++.. ....=..++|+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTE 60 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEcc
Confidence 58899999999999999999976 32221235566543
No 232
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.92 E-value=0.004 Score=57.09 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|++|+||||+++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999886
No 233
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.92 E-value=0.0035 Score=57.98 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.++|+|+|++|+||||+|+.++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999987
No 234
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.90 E-value=0.017 Score=56.79 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEec
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVR 42 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 42 (692)
-++|+++|.+|+||||++..++.. ....=..+.+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 368999999999999999999887 43322235556544
No 235
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.86 E-value=0.0044 Score=56.19 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 048083 4 QIIAILGERGSGKTTLARTVYD 25 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~ 25 (692)
.+|.|.|++|+||||+|+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 236
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.0047 Score=63.95 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+=|.++|++|.|||.||+++++.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999999998
No 237
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.82 E-value=0.0042 Score=56.65 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+.|.|+|++|+||||+|+.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999887
No 238
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.81 E-value=0.011 Score=58.03 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|+|+|.+|+||||||+.++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 789999999999999999987
No 239
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.80 E-value=0.015 Score=58.29 Aligned_cols=87 Identities=14% Similarity=0.230 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccc--cceEEecCccchHHHHHHHHHHhhhhhhhc-cCCChhHH------H
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAK--RAWIRVRGDAKFRDVLIDILQQIDDETLVE-ASAPEADL------V 74 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~------~ 74 (692)
+.++|+|.+|.|||||++.+.+. +...... ++++-+.+... ++ ..+.+.+.....-. ........ .
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~~--Ev-~~~~~~~~~~vV~atadep~~~r~~~a~~a 249 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERPE--EV-TEMQRLVKGEVVASTFDEPASRHVQVAEMV 249 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCHH--HH-HHHHTTCSSEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCChH--HH-HHHHHHhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999887 5444422 33455555432 21 12233331110000 11111111 1
Q ss_pred HHHHHHh--ccccEEEEEeCCCC
Q 048083 75 SSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 75 ~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
-.+.+++ +++.+||++||+..
T Consensus 250 lt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 250 IEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEEEeCchH
Confidence 1122333 57899999999875
No 240
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.80 E-value=0.038 Score=57.34 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccc-cceEEecCc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAK-RAWIRVRGD 44 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~-~~wv~~~~~ 44 (692)
+.++|+|.+|+||||||..+..+ ....+.. ++++.+.+.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGer 191 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGER 191 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSC
T ss_pred CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccC
Confidence 46899999999999999999988 5545533 445555544
No 241
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.79 E-value=0.0099 Score=59.29 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|.|+|.+|+|||++|+.+++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47899999999999999999987
No 242
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.78 E-value=0.0038 Score=56.19 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|+||||+|+.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999886
No 243
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.76 E-value=0.0057 Score=62.76 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|+|++|+|||++|+++++.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999988
No 244
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.0044 Score=64.08 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+=|.++|++|.|||+||+++++.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999998
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.74 E-value=0.0049 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999876
No 246
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.0042 Score=64.26 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+=|.++|++|.|||.||++++++
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 45789999999999999999998
No 247
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.72 E-value=0.0014 Score=63.93 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|+|.+|+|||++|+++++.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 678999999999999999987
No 248
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.71 E-value=0.0041 Score=63.45 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.|+|++|+|||++|+++++.
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999987
No 249
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.69 E-value=0.0053 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999887
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.66 E-value=0.0041 Score=57.64 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|+.|+||||+|+.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999887
No 251
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.64 E-value=0.0063 Score=60.50 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecC
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRG 43 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 43 (692)
+.|||+|+|-|||||||.|..++.- ....=..+.-|+.+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 5689999999999999998877665 332212355667664
No 252
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.63 E-value=0.0058 Score=58.91 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|.|++|+||||||++++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 58999999999999999999876
No 253
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.61 E-value=0.0064 Score=54.82 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|+||||+|+.+...
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 58999999999999999999876
No 254
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.60 E-value=0.0064 Score=56.26 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|.||||+|+.+...
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999987
No 255
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.58 E-value=0.028 Score=56.05 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQ 57 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 57 (692)
.++.|.|.+|+||||+|..++......+ ..++|++.. .+..++...+...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 4789999999999999999987732222 456777654 3445555554443
No 256
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.57 E-value=0.018 Score=60.87 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|+|.+|.||||||++++..
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999987
No 257
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.55 E-value=0.0063 Score=56.32 Aligned_cols=23 Identities=43% Similarity=0.689 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|+||||+|+.+...
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999876
No 258
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.53 E-value=0.0051 Score=55.77 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|.|+|++|+||||+|+.+...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999876
No 259
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.52 E-value=0.0052 Score=55.44 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|.|++|+||||+|+.++..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999887
No 260
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.50 E-value=0.034 Score=51.41 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|.|.|++|+||||.|+.++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999887
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.49 E-value=0.0064 Score=55.66 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999886
No 262
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.49 E-value=0.0067 Score=56.28 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 048083 4 QIIAILGERGSGKTTLARTVYD 25 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~ 25 (692)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.49 E-value=0.008 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|.|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999876
No 264
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.48 E-value=0.0067 Score=55.24 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999876
No 265
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.47 E-value=0.041 Score=54.94 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQ 57 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 57 (692)
.++.|.|.+|+||||+|..++.. ....=..++|++.. .+..++...++..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 47899999999999999999988 33211235565543 3455666655443
No 266
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.0064 Score=62.20 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+=|.++|++|.|||.||++++++
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 34789999999999999999998
No 267
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.47 E-value=0.008 Score=55.70 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...+|+|.|+.|+||||+|+.+++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999876
No 268
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.46 E-value=0.0061 Score=55.28 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
|.|.|+|++|+|||||++++..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999999877
No 269
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.46 E-value=0.008 Score=54.97 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 048083 4 QIIAILGERGSGKTTLARTVYD 25 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~ 25 (692)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 270
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.46 E-value=0.018 Score=57.71 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.++.+.|++|+|||++|+++++.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHHH
Confidence 36677888999999999999988
No 271
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.44 E-value=0.0069 Score=63.74 Aligned_cols=22 Identities=45% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.|+|++|.|||+||++++.+
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999987
No 272
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.44 E-value=0.0072 Score=55.42 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 273
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.43 E-value=0.043 Score=56.32 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhh----cccccceEEecCccchHHHHHHHHHHhh
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKR----HFAKRAWIRVRGDAKFRDVLIDILQQID 59 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 59 (692)
.++.|+|.+|+||||||+.++-...... .-..++|++....+....+ ..+++.+.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 5899999999999999997753311111 1234778876655444333 33444444
No 274
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.40 E-value=0.0076 Score=56.16 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|+|+|..|.|||||++.+...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999887
No 275
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.39 E-value=0.0075 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.785 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 048083 4 QIIAILGERGSGKTTLARTVYD 25 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~ 25 (692)
.+++|+|..|+|||||++.++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 5899999999999999998654
No 276
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.38 E-value=0.039 Score=56.95 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEec
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVR 42 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 42 (692)
++|+|+|.+|+||||++..++.. .+..=..+..+...
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAAD 135 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEeecc
Confidence 68999999999999999999887 43331234455543
No 277
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.37 E-value=0.0061 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|++|+||||+++.+...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999887
No 278
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.37 E-value=0.0084 Score=54.84 Aligned_cols=24 Identities=29% Similarity=0.672 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|+|+|+.|+||||+|+.+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 279
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.37 E-value=0.017 Score=64.54 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+=|.++|++|.|||+||++++++
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998
No 280
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.36 E-value=0.0059 Score=55.58 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999886
No 281
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.35 E-value=0.0083 Score=55.64 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999875
No 282
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.34 E-value=0.015 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999987
No 283
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.32 E-value=0.0085 Score=55.80 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|+.|+|||||++.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999887
No 284
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.31 E-value=0.0086 Score=54.99 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|++|+||||+|+.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 285
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.29 E-value=0.011 Score=55.05 Aligned_cols=24 Identities=46% Similarity=0.559 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|+|+|++|+||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999886
No 286
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.28 E-value=0.038 Score=57.49 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcc-cccceEEec
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHF-AKRAWIRVR 42 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~ 42 (692)
.++|+|+|.||+||||+|..++.. .+... ..+..++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSAD 138 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecC
Confidence 468999999999999999999987 44331 234455544
No 287
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.28 E-value=0.01 Score=54.87 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...+|+|+|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999999874
No 288
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.28 E-value=0.012 Score=53.59 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|++|+||||+|+.++..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999987
No 289
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.28 E-value=0.0099 Score=55.22 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 048083 4 QIIAILGERGSGKTTLARTVYD 25 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~ 25 (692)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 290
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.26 E-value=0.021 Score=60.55 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.|+|.+|.|||++|+++++.
T Consensus 240 ~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHHH
Confidence 5789999999999999999887
No 291
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.26 E-value=0.0072 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999886
No 292
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.24 E-value=0.0095 Score=54.76 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|+|.|++|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 293
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.23 E-value=0.0093 Score=55.24 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999887
No 294
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.22 E-value=0.0086 Score=55.21 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|++|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999887
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.22 E-value=0.013 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|.|..|+|||||+.++...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999999987
No 296
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.22 E-value=0.0097 Score=54.19 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|.|++|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
No 297
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.21 E-value=0.0094 Score=55.35 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|+||||+|+.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999877
No 298
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.19 E-value=0.01 Score=53.53 Aligned_cols=23 Identities=48% Similarity=0.748 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.++|+|..|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998873
No 299
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.17 E-value=0.011 Score=54.04 Aligned_cols=23 Identities=13% Similarity=0.566 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|+.|+|||||++.+...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 68999999999999999999876
No 300
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.17 E-value=0.011 Score=57.24 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999886
No 301
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.13 E-value=0.057 Score=53.12 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEec
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVR 42 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 42 (692)
++|+|+|.+|+||||+|..++.. .+..=..+.+++..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAAD 135 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCC
Confidence 68999999999999999999987 43321224445543
No 302
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.12 E-value=0.011 Score=55.06 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|..|+|||||++.+...
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999886
No 303
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.12 E-value=0.01 Score=54.29 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|.|++|+||||+|+.+...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999876
No 304
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.10 E-value=0.0074 Score=54.79 Aligned_cols=23 Identities=48% Similarity=0.535 Sum_probs=17.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999876
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.09 E-value=0.011 Score=55.96 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 306
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.09 E-value=0.011 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999886
No 307
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.02 E-value=0.015 Score=61.39 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.++|++|.|||++|+++++.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 35789999999999999999998
No 308
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.01 E-value=0.041 Score=55.65 Aligned_cols=42 Identities=33% Similarity=0.431 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc---cc-cceEEecCcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF---AK-RAWIRVRGDA 45 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F---~~-~~wv~~~~~~ 45 (692)
++++|+|.+|+|||||++.++......... .+ ++|++....+
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~ 177 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 177 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence 689999999999999999998773112112 23 4788765544
No 309
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.00 E-value=0.011 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|++|+||||+|+.+...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999886
No 310
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.94 E-value=0.01 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999875
No 311
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.92 E-value=0.014 Score=56.12 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|+|.|+.|+||||+|+.+...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999886
No 312
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.92 E-value=0.013 Score=56.20 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|+||||+++.++..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999955
No 313
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.92 E-value=0.013 Score=53.69 Aligned_cols=22 Identities=50% Similarity=0.738 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999886
No 314
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.85 E-value=0.032 Score=47.22 Aligned_cols=53 Identities=17% Similarity=0.048 Sum_probs=28.0
Q ss_pred eeeccCCCcc--ccCccccCCCCCeEEecCCccceecCh-hhhccccCceeecccccc
Q 048083 391 YLGLRSTFID--SLPNSVGNLRYLETLDVKHTKLRYLPD-SIWKAKKLQHLYLNWIHS 445 (692)
Q Consensus 391 ~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~ 445 (692)
.++.+++.+. .+|..+ -.+|++|+|++|+|+.+|. .+..+++|+.|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3444555554 555332 2345566666666665543 345566666666666654
No 315
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.85 E-value=0.059 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|..|+||||+++.++..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999887
No 316
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.84 E-value=0.021 Score=61.70 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+.|+|++|+||||||+.++..
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999987
No 317
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.82 E-value=0.013 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|.|++|+||||+|+.+...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 318
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.82 E-value=0.016 Score=53.48 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|+|.|..|+||||+|+.+...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 319
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.82 E-value=0.015 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|+|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999876
No 320
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.81 E-value=0.017 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|.|..|.|||||++.++.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999886
No 321
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.81 E-value=0.016 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999987
No 322
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.81 E-value=0.033 Score=52.56 Aligned_cols=40 Identities=35% Similarity=0.522 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchh---hcc-cccceEEecC
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVK---RHF-AKRAWIRVRG 43 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~---~~F-~~~~wv~~~~ 43 (692)
.+++|+|.+|+|||||++.++...... ... ...+|+....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 589999999999999999998642111 112 2367776544
No 323
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.79 E-value=0.013 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|+.|+||||+|+.+...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999887
No 324
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.79 E-value=0.017 Score=56.68 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..+|+|+|..|+||||||+.+...
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 325
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.79 E-value=0.034 Score=56.22 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 048083 6 IAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.++|++|+||||+|+.+++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999987
No 326
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.73 E-value=0.015 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|.|++|+||||+|+.+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 327
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.72 E-value=0.018 Score=53.53 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.-+||.|.|++|+||||.|+.++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999887
No 328
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.71 E-value=0.056 Score=56.15 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|.|+|++|+||||+|++++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999887
No 329
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.70 E-value=0.018 Score=56.34 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 048083 3 HQIIAILGERGSGKTTLARTVY 24 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~ 24 (692)
..+|+|+|+.|+||||+|+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.70 E-value=0.034 Score=50.97 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999887
No 331
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.69 E-value=0.017 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999886
No 332
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.68 E-value=0.017 Score=57.36 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|||.|..|+||||||+.+..-
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhh
Confidence 58999999999999999999876
No 333
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.68 E-value=0.016 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|+.|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999887
No 334
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.67 E-value=0.018 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|||.|..|+||||||+.+...
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 335
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.65 E-value=0.016 Score=54.27 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|.|++|+||||+|+.+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 336
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.64 E-value=0.017 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|+.|+||||+|+.++..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999976
No 337
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.59 E-value=0.015 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999876
No 338
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.54 E-value=0.015 Score=55.62 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|+.|+||||+++.++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999886
No 339
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.54 E-value=0.018 Score=57.33 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 48999999999999999999887
No 340
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.53 E-value=0.016 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...|.|.|++|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999887
No 341
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.51 E-value=0.016 Score=56.82 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|.|.|++|+||||+|+++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999876
No 342
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.51 E-value=0.018 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|.|++|+||||+|+.++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999886
No 343
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.48 E-value=0.02 Score=53.59 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++++|+|+.|+|||||++.+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999876
No 344
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.48 E-value=0.047 Score=62.62 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-+.|+|.+|+||||+|+.+++.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988
No 345
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.45 E-value=0.021 Score=53.23 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|+.|+||||+|+.+...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999887
No 346
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.45 E-value=0.06 Score=55.75 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhh-cccccceEEecCcc-chHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKR-HFAKRAWIRVRGDA-KFRDVLIDILQ 56 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~F~~~~wv~~~~~~-~~~~~~~~i~~ 56 (692)
+.++|.|..|+|||+|+..+.+. +.. +-+.++++-+.+.. ...++.+.+..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~--~~~~~~~v~V~~~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINN--VAKAHGGYSVFAGVGERTREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH--TTTTCSSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHh--hHhhCCCEEEEEECCCcchHHHHHHHHhhh
Confidence 56899999999999999999887 432 22456677676654 33445555443
No 347
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.45 E-value=0.065 Score=55.42 Aligned_cols=24 Identities=42% Similarity=0.443 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-++|+++|.+|+||||++..++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999887
No 348
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.43 E-value=0.012 Score=52.72 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+++|+|+|..|+|||||++.+..-
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 349
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.43 E-value=0.088 Score=52.81 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-cc-cceEEecCc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-AK-RAWIRVRGD 44 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~-~~wv~~~~~ 44 (692)
+.++|.|.+|+|||+|+..+++. +.... +. ++++-+.+.
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~--i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANG--IAENHPDTIRIILLIDER 216 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHH--HHHHCTTSEEEEEECSCC
T ss_pred ceEEEecCCCCChhHHHHHHHHH--HhhcCCCeEEEEEEeccC
Confidence 57899999999999999999998 54433 22 234455443
No 350
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.42 E-value=0.024 Score=53.13 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 048083 4 QIIAILGERGSGKTTLARTVYD 25 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~ 25 (692)
.+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999965
No 351
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.42 E-value=0.063 Score=49.23 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEE
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIR 40 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 40 (692)
.|+|=|.-|+||||.++.+++. .+..-..+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEE
Confidence 3788999999999999999988 544433344443
No 352
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.38 E-value=0.018 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.+|+|+|..|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999999873
No 353
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.35 E-value=0.023 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+++++|.|..|+|||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999887
No 354
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.33 E-value=0.022 Score=52.85 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999886
No 355
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.32 E-value=0.01 Score=55.39 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|.|..|+||||+|+.+...
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999876
No 356
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.31 E-value=0.08 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|.++|.+|+||||++.+++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH
Confidence 469999999999999999999876
No 357
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.28 E-value=0.024 Score=56.25 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|.|+|+.|+||||||++++.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999988
No 358
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.26 E-value=0.023 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|.+|+|||||++.++..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999854
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.18 E-value=0.024 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|++|+||||+|+.+.+.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
No 360
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.16 E-value=0.012 Score=50.96 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.|+|.+|+|||++|+++++.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 3679999999999999999987
No 361
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.15 E-value=0.12 Score=53.99 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIR 40 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 40 (692)
.+|+|+|.+|+|||||++.++.. .+. ..+.+++.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLA 327 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEE
T ss_pred eEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEe
Confidence 58999999999999999999887 432 24455554
No 362
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.14 E-value=0.025 Score=55.96 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|.|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999987
No 363
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.13 E-value=0.053 Score=53.47 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhccc-ccceEEec
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFA-KRAWIRVR 42 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~~~ 42 (692)
.+++|.|.+|+|||||++.++.. ....-. .++|+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 48999999999999999999887 433322 35566543
No 364
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.13 E-value=0.029 Score=55.64 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|||.|..|+||||+|+.+...
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999776
No 365
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.13 E-value=0.017 Score=54.67 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=16.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-cc
Q 048083 4 QIIAILGERGSGKTTLARTVY-DR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~-~~ 26 (692)
.+|+|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 54
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.12 E-value=0.025 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|+|+|.+|+||||+++.++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 359999999999999999999877
No 367
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.12 E-value=0.028 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999886
No 368
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.11 E-value=0.028 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|.|..|+||||||.++..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999887
No 369
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.10 E-value=0.022 Score=57.33 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=68.5
Q ss_pred ccccCCCCHHHHHHHHHhhccccccccCccccCCCchhHHHHHHHHHHHhCCCchHHHHHhh------hhcCC-C--hHH
Q 048083 114 TLHLSRLNKEESWKLLLKKVPVATAAESDDDLNNNSESINTFKERILEICGGLPLHISLLGG------LLSTK-E--AKY 184 (692)
Q Consensus 114 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~------~l~~~-~--~~~ 184 (692)
...+++.+.++-.+++.+.+-.. + . .-..+.+..|++.+.|.|-.+.-+-. ...+. . .+.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~---~------~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~ 242 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLM---D------V--EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDI 242 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHT---T------C--CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHc---C------C--CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 35889999999999998775221 1 1 11234578889999999864432221 11222 2 555
Q ss_pred HHHHHHHhcCCCCCCCCCccchhHHhhhcCCCCCCccchhhHHHHHHhcCCCCCchHHHHHHHHH-HHHhccceeeee
Q 048083 185 WSKVIEHADNSRSGSGTGSGLKPFFLYVGMFPRGFEIPVRRLIHLWCAEGFAAPIDTDLAEMYFE-ELVIRNLIQVTK 261 (692)
Q Consensus 185 w~~~l~~l~~~~s~~~L~~~~k~~fl~~a~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~-~L~~~sLi~~~~ 261 (692)
.+.+++.+.. ...+++...+..+.-++-.+.+-.+..+.+.... ++ +.+..+++++ .|...++++...
T Consensus 243 v~~al~~~~~--~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~-~~------~~~t~~~~~~~~l~~~g~i~~~~ 311 (334)
T 1in4_A 243 VLKTMEVLNI--DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASL-GV------EADTLSEVYEPYLLQAGFLARTP 311 (334)
T ss_dssp HHHHHHHHTC--CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHH-TS------CHHHHHHHTHHHHHHTTSEEEET
T ss_pred HHHHHHHhCC--CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHh-CC------CcchHHHHHHHHHHHcCCeeccc
Confidence 6666666532 1234444444444443332333344444433321 11 2223333333 788899998755
No 370
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.08 E-value=0.13 Score=54.02 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhccc-ccceEEecCccchHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFA-KRAWIRVRGDAKFRDVLIDI 54 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 54 (692)
.++.|.|.+|+||||||..++.. ....-. .++|++... +..++...+
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEESSS--CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEECCC--CHHHHHHHH
Confidence 47899999999999999999988 433222 466766543 334444444
No 371
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.04 E-value=0.025 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999886
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.03 E-value=0.025 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|.|.|++|+||||+|+.++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999887
No 373
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.03 E-value=0.026 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|++|+||||+|+.+...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999877
No 374
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.00 E-value=0.049 Score=49.30 Aligned_cols=107 Identities=17% Similarity=0.160 Sum_probs=54.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhh-------------hhhhhccCCChh
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQID-------------DETLVEASAPEA 71 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-------------~~~~~~~~~~~~ 71 (692)
.|-|++-.|.||||+|..++-+. .++=-.++++.+.... ....-..+++.+. .+..++......
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA--~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARA--VGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHH--HHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 46677777799999999998883 2221234555443321 1111122233331 000000111123
Q ss_pred HHHHHHHHHhccccE-EEEEeCCCCcccccccCCCCcccccCCccccCCCCHHHHHHHHHhh
Q 048083 72 DLVSSLTTLLKEISY-LIVVEDVETPQVCNPNNIPPEAEAAGPTLHLSRLNKEESWKLLLKK 132 (692)
Q Consensus 72 ~~~~~l~~~L~~k~~-LlVLDdv~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 132 (692)
.....+++.+...+| |||||++--. ..+.-++.++-.+++..+
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~a------------------l~~g~l~~~ev~~~l~~R 150 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYM------------------VAYDYLPLEEVISALNAR 150 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHH------------------HHTTSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCcc------------------ccCCCCCHHHHHHHHHhC
Confidence 345556666655444 9999976421 133456666766666654
No 375
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.99 E-value=0.026 Score=53.06 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 376
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.98 E-value=0.03 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|.|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 58999999999999999999887
No 377
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.98 E-value=0.037 Score=53.36 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWI 39 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv 39 (692)
.+|+|+|..|+|||||++.+... +...+.+.+++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~ 59 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY--INQTKSYHIIT 59 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEE
Confidence 58999999999999999999886 43333444443
No 378
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.97 E-value=0.026 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|+|||||++.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 57999999999999999999876
No 379
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.96 E-value=0.019 Score=55.30 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|.|+|++|+||||+|+.+...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999876
No 380
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.94 E-value=0.026 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|+|||||++.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999876
No 381
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.93 E-value=0.032 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...+|+|+|.+|+|||||+.++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999877
No 382
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.92 E-value=0.031 Score=55.16 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIR 40 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 40 (692)
.+++|+|..|+||||+++.++.. .+.. .+.+.+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~--l~~~-~g~V~l~ 134 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR--LKNE-GTKVLMA 134 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH--HHHT-TCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH--HHHc-CCeEEEE
Confidence 58999999999999999999987 4322 3445543
No 383
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.92 E-value=0.03 Score=55.65 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|||+|..|+|||||++.+...
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999876
No 384
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.90 E-value=0.024 Score=52.47 Aligned_cols=23 Identities=43% Similarity=0.421 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999765
No 385
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.89 E-value=0.15 Score=53.47 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhccc-ccceEEecCccchHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFA-KRAWIRVRGDAKFRDVLIDILQ 56 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~ 56 (692)
.++.|.|.+|+||||+|..++.. ...... .++|++... +..++...++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESSS--CHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECCC--CHHHHHHHHHH
Confidence 47899999999999999999988 433222 366666543 44455555443
No 386
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.88 E-value=0.036 Score=52.88 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecC
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRG 43 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 43 (692)
.+++|.|.+|+||||||.+++.. ....=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 47899999999999999998876 332223466776544
No 387
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.88 E-value=0.12 Score=53.92 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDIL 55 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 55 (692)
.++.|.|.+|+||||+|..++.+ ....=..++|++... +..++...+.
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEECSSS--CTTHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEECCC--CHHHHHHHHH
Confidence 47899999999999999999988 433312355665433 3334444443
No 388
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.87 E-value=0.018 Score=56.58 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=19.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+..+|+|.|..|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 389
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.83 E-value=0.045 Score=62.08 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.|+|.+|+||||||++++..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36899999999999999999987
No 390
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.83 E-value=0.033 Score=55.61 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHF 33 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F 33 (692)
...|+|+|++|+||||+|+.++.. ..-.|
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~--l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQI--INEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--HHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHH--hCCCe
Confidence 356899999999999999999887 44344
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.83 E-value=0.033 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|.|.|+.|+||||+|+.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999887
No 392
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.81 E-value=0.056 Score=53.65 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=30.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDA 45 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~ 45 (692)
..++|+|+|-||+||||+|..++.- ....=..++-|+.+...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKH 81 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSC
T ss_pred CceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCC
Confidence 3578999999999999999999887 43321235666765443
No 393
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.80 E-value=0.023 Score=51.74 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.+.|+|++|.||||+|.++++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999887
No 394
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.80 E-value=0.14 Score=53.23 Aligned_cols=90 Identities=13% Similarity=0.190 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhh-cccccceEEecCcc-chHHHHHHHHHHhhhh--------hh---hccC---
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKR-HFAKRAWIRVRGDA-KFRDVLIDILQQIDDE--------TL---VEAS--- 67 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~-~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~~---~~~~--- 67 (692)
+.++|.|..|+|||+|+..+.+. +.. +-+.++++-+.+.. ...++...+...=... .. ....
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~--~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHH--TTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CeEEeecCCCCCchHHHHHHHHH--HHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 46899999999999999999987 432 33567777776654 3345555544321000 00 0001
Q ss_pred ---CChhHHHHHHHHHhc---cccEEEEEeCCCC
Q 048083 68 ---APEADLVSSLTTLLK---EISYLIVVEDVET 95 (692)
Q Consensus 68 ---~~~~~~~~~l~~~L~---~k~~LlVLDdv~~ 95 (692)
.......-.+.++++ ++.+|+++||+-.
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 111222333555554 5799999999865
No 395
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.79 E-value=0.03 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.637 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999876
No 396
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.77 E-value=0.048 Score=53.58 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD 44 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 44 (692)
.++|+|.|-||+||||+|..++.. ....=..++-|+.+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCCC
Confidence 578999999999999999999887 4332123556666544
No 397
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.76 E-value=0.05 Score=52.76 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=29.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGD 44 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 44 (692)
.++|+|.|-||+||||+|..++.- ....=..++-|+.+..
T Consensus 1 M~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTT
T ss_pred CcEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCC
Confidence 378999999999999999999887 4322123566666543
No 398
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.74 E-value=0.034 Score=52.08 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...+|+|+|.+|+|||||+.++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999887
No 399
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.68 E-value=0.034 Score=55.03 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 400
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.64 E-value=0.031 Score=54.23 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|+|||||++.++.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999876
No 401
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.64 E-value=0.045 Score=54.43 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEec
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVR 42 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 42 (692)
-++|+|+|.+|+||||++..++.. .+..=..+.++..+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~--l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY--YAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCC
Confidence 368999999999999999999887 44321234455543
No 402
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.63 E-value=0.032 Score=53.84 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|+|||||++.++.-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999876
No 403
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.59 E-value=0.037 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999985
No 404
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.59 E-value=0.028 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999876
No 405
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.58 E-value=0.033 Score=53.83 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 57999999999999999999886
No 406
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.58 E-value=0.037 Score=54.06 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|.|+.|+||||||.+++..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 58899999999999999999887
No 407
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.58 E-value=0.033 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|+|||||++.++.-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 58999999999999999999876
No 408
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.57 E-value=0.075 Score=54.68 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-c-ccceEEecCcc-chHHHHHHHHHH--hhhhhh--hccCCChh-----
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-A-KRAWIRVRGDA-KFRDVLIDILQQ--IDDETL--VEASAPEA----- 71 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~-~~~wv~~~~~~-~~~~~~~~i~~~--l~~~~~--~~~~~~~~----- 71 (692)
+.++|.|..|+|||+|+.+++++....+.- + .++++-+.+.. ...++...+... +..... ........
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 356899999999999999999884321111 1 35566565543 334444444332 100000 00111111
Q ss_pred -HHHHHHHHHhc---cccEEEEEeCCCC
Q 048083 72 -DLVSSLTTLLK---EISYLIVVEDVET 95 (692)
Q Consensus 72 -~~~~~l~~~L~---~k~~LlVLDdv~~ 95 (692)
...-.+.++++ ++.+|+++||+-.
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11223555554 6899999999865
No 409
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.57 E-value=0.043 Score=48.16 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHccc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
+..|+|+|.+|+|||||+.++....
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998763
No 410
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.56 E-value=0.034 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999876
No 411
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.55 E-value=0.035 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999876
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.51 E-value=0.056 Score=50.96 Aligned_cols=23 Identities=48% Similarity=0.742 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|+.|+||||+++.+...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999988
No 413
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.48 E-value=0.044 Score=52.90 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..++.+.|.||+||||++..++..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHH
Confidence 457889999999999999999866
No 414
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.48 E-value=0.038 Score=52.68 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999876
No 415
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.46 E-value=0.036 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999876
No 416
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.46 E-value=0.06 Score=56.93 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-+.|+|.+|+|||++|+.++..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988
No 417
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.43 E-value=0.037 Score=52.87 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999886
No 418
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.43 E-value=0.077 Score=49.72 Aligned_cols=23 Identities=39% Similarity=0.513 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|-|+.|+||||+++.+++.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999988
No 419
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.42 E-value=0.04 Score=53.29 Aligned_cols=23 Identities=48% Similarity=0.757 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999985
No 420
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.40 E-value=0.1 Score=63.73 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhh---hccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETL---VEASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~l~~~ 80 (692)
+.|.|+|++|+|||+||.++.... ...=..+.|+++....+... ++.++.... -....+.++..+.+++.
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Confidence 588999999999999999998873 22212466777776654433 334431100 00233444555555555
Q ss_pred hc-cccEEEEEeCCCC
Q 048083 81 LK-EISYLIVVEDVET 95 (692)
Q Consensus 81 L~-~k~~LlVLDdv~~ 95 (692)
.+ .+.-+||+|.+.-
T Consensus 1501 vr~~~~~lVVIDsi~a 1516 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSVAA 1516 (2050)
T ss_dssp HHHTCCSEEEESCGGG
T ss_pred HhcCCCCEEEEcChhH
Confidence 43 4567999998763
No 421
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.39 E-value=0.037 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|+|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999876
No 422
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.38 E-value=0.064 Score=49.51 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=30.6
Q ss_pred ceEEEEE-cCCCCcHHHHHHHHHcccchhhcccccceEEecCccch
Q 048083 3 HQIIAIL-GERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKF 47 (692)
Q Consensus 3 ~~vv~I~-G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~ 47 (692)
.++|+|+ +-||+||||+|..++.. ....=..++.++.+...+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQMSL 44 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTTCHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCCCCH
Confidence 4788887 77999999999999887 4432234666777655443
No 423
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.32 E-value=0.043 Score=50.11 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
-.|+|+|.+|+|||||.+.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998763
No 424
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.32 E-value=0.048 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 425
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.31 E-value=0.039 Score=53.13 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWI 39 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv 39 (692)
.+++|+|..|+|||||++.++.- .. . .+.+++
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl--~~-~-~G~I~i 78 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF--YD-A-EGDIKI 78 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS--SC-C-EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcc--CC-C-CeEEEE
Confidence 57999999999999999999887 33 2 455554
No 426
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.30 E-value=0.045 Score=55.20 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEE
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIR 40 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~ 40 (692)
.+|+|+|..|+||||+++.++.. .+.. .+.+.+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~--l~~~-~G~V~l~ 191 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR--LKNE-GTKVLMA 191 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH--HHHT-TCCEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHhh--cccc-CCEEEEe
Confidence 58999999999999999999987 4322 3444443
No 427
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.28 E-value=0.12 Score=57.76 Aligned_cols=69 Identities=17% Similarity=0.391 Sum_probs=41.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhhccCCChhHHHHHHHHHhccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLVEASAPEADLVSSLTTLLKEI 84 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k 84 (692)
-|.++|++|.|||.+|++++++ .... ++.++.. + ++.... ......+.+.+...-+..
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~~----~----l~s~~v-------Gese~~vr~lF~~Ar~~~ 570 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKGP----E----LLTMWF-------GESEANVREIFDKARQAA 570 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCHH----H----HHTTTC-------SSCHHHHHHHHHHHHTTC
T ss_pred eEEEecCCCCCchHHHHHHHHH--hCCc-----eEEeccc----h----hhcccc-------chHHHHHHHHHHHHHHcC
Confidence 3678999999999999999998 3322 3343311 1 111111 112223333333333457
Q ss_pred cEEEEEeCCCC
Q 048083 85 SYLIVVEDVET 95 (692)
Q Consensus 85 ~~LlVLDdv~~ 95 (692)
++.|++|+++.
T Consensus 571 P~IifiDEiDs 581 (806)
T 3cf2_A 571 PCVLFFDELDS 581 (806)
T ss_dssp SEEEECSCGGG
T ss_pred CceeechhhhH
Confidence 89999999875
No 428
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.25 E-value=0.041 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999887
No 429
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.20 E-value=0.1 Score=44.03 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=37.3
Q ss_pred cccccccCccCccceeeeeccCCCCCchhhhhcCCCCCeeeecCCccC
Q 048083 545 MFSAKTSSFPRNLKIVTLSMSRLYWDPMEALEKLCHLNILRIIGEAYE 592 (692)
Q Consensus 545 ~~p~~~~~l~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 592 (692)
.+|. .+|.+|+.|+|++|+++......|..+++|+.|+|.+|.+.
T Consensus 24 ~vP~---~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPT---AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCS---CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCC---CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5553 35688999999999999888888899999999999988653
No 430
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.19 E-value=0.042 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999886
No 431
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.15 E-value=0.044 Score=53.86 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|..|.|||||++.+..-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 58999999999999999999865
No 432
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.14 E-value=0.044 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|.+|+||||||+.++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 433
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.12 E-value=0.044 Score=53.04 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999876
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.11 E-value=0.053 Score=51.46 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.+|+|+|+.|+||||+|+.+...
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 435
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.11 E-value=0.084 Score=48.99 Aligned_cols=37 Identities=14% Similarity=-0.060 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecC
Q 048083 5 IIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRG 43 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 43 (692)
.|.+.|.||+||||+|..++.... +..++ +.++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCC
Confidence 478899999999999999988832 22333 44555544
No 436
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.08 E-value=0.044 Score=52.54 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999876
No 437
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.08 E-value=0.044 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999886
No 438
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.89 E-value=0.056 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-.|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999876
No 439
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.85 E-value=0.05 Score=54.29 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999866
No 440
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.84 E-value=0.05 Score=49.26 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
No 441
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.84 E-value=0.13 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|.|+.|+||||+++.+.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999887
No 442
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.82 E-value=0.26 Score=52.63 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcc-cccceEEecCccchHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHF-AKRAWIRVRGDAKFRDVLIDILQ 56 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~ 56 (692)
.++.|.|.+|+||||+|.+++.+ ..... ..++|++... +..++...++.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHH
Confidence 47899999999999999999988 43332 2466776544 34455555443
No 443
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.79 E-value=0.17 Score=61.06 Aligned_cols=86 Identities=21% Similarity=0.236 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhh---ccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLV---EASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 80 (692)
++|.|.|.+|+||||||.+++.. ....=..++|++....... +. ++.+...... ....+.++....+++.
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~--aa~~g~~VlyiS~Ees~~q--l~---A~~lGvd~~~L~i~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDP--IY---ARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCH--HH---HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHH--HHHcCCCeEEEeccchHHH--HH---HHHcCCChhheEEecCCcHHHHHHHHHHH
Confidence 58999999999999999999988 4332224667766555442 21 3444321110 0233555666666554
Q ss_pred hc-cccEEEEEeCCCCc
Q 048083 81 LK-EISYLIVVEDVETP 96 (692)
Q Consensus 81 L~-~k~~LlVLDdv~~~ 96 (692)
.+ .+.-+||+|.+...
T Consensus 806 v~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 806 ARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHTCCSEEEESCSTTC
T ss_pred HHccCCCEEEEechhhh
Confidence 43 45669999998753
No 444
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.76 E-value=0.066 Score=51.79 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.|+|.+|+|||++|+++++.
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 4679999999999999999987
No 445
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.75 E-value=0.34 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.++|+|+|.+|+||||++.+++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 446
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.70 E-value=0.046 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|.|..|+||||+++.+...
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999998775
No 447
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.68 E-value=0.13 Score=47.74 Aligned_cols=41 Identities=22% Similarity=0.113 Sum_probs=29.4
Q ss_pred EEEE-EcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchH
Q 048083 5 IIAI-LGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFR 48 (692)
Q Consensus 5 vv~I-~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 48 (692)
+|+| -+-||+||||+|..++.. ....= .++-|+.+...+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~--la~~g-~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAY--LALQG-ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHTTS-CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHH--HHhcC-CEEEEECCCCCCHH
Confidence 5666 488999999999999887 43332 56677776654433
No 448
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.61 E-value=0.06 Score=54.71 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|+|++|.|||||++.++..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999975
No 449
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.61 E-value=0.057 Score=54.83 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
++|+|.|+.|+||||||..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58999999999999999999876
No 450
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.60 E-value=0.068 Score=48.37 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 451
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.56 E-value=0.073 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 2 THQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 2 ~~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+..+|+|+|.+|+|||||+.++...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998765
No 452
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.51 E-value=0.057 Score=53.59 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-|.|+|.+|+|||++|+++++.
T Consensus 52 ~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999987
No 453
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.50 E-value=0.058 Score=51.94 Aligned_cols=23 Identities=48% Similarity=0.683 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999876
No 454
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.45 E-value=0.064 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|+|+|.+|+|||||+.++....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998663
No 455
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.45 E-value=0.16 Score=47.25 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|.|+.|+||||+++.+.+.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999988
No 456
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.43 E-value=0.2 Score=60.54 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhh---ccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLV---EASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 80 (692)
+++.|+|.+|+||||||.+++.. ....=..++|++.....+.. .++.+...... ....+.++....+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Confidence 58899999999999999999887 33322357788776665532 13444332110 0334455666555554
Q ss_pred hc-cccEEEEEeCCCCc
Q 048083 81 LK-EISYLIVVEDVETP 96 (692)
Q Consensus 81 L~-~k~~LlVLDdv~~~ 96 (692)
.+ .+.-+||+|-+...
T Consensus 457 v~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHTCCSEEEESCSTTC
T ss_pred HHhcCCCEEEECCHHHh
Confidence 43 34569999998753
No 457
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.38 E-value=0.068 Score=47.19 Aligned_cols=22 Identities=14% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|+|.+|+|||||+.++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999876
No 458
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.37 E-value=0.12 Score=52.05 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchh--hcccccceEEecCccch
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVK--RHFAKRAWIRVRGDAKF 47 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~--~~F~~~~wv~~~~~~~~ 47 (692)
.+++.+.|.||+||||+|..++.. .. ..=..++-|+.+...+.
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~--la~~~~g~~vllid~D~~~~l 62 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQ--LALAQPNEQFLLISTDPAHNL 62 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH--HHHHCTTSCEEEEECCSSCHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHH--HHHhcCCCeEEEEECCCCCCh
Confidence 578899999999999999999877 44 22123556676654443
No 459
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.35 E-value=0.047 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.691 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+|..|.|||||++.+..-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 57999999999999999999876
No 460
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.33 E-value=0.068 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|.|..|+||||+|+.+++.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999987
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.33 E-value=0.095 Score=48.34 Aligned_cols=29 Identities=38% Similarity=0.681 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFA 34 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~ 34 (692)
+.|+|=|.-|+||||+++.+++. ....++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~--L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR--LVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH--HTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHH--HHCCCC
Confidence 46899999999999999999988 444443
No 462
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.32 E-value=0.069 Score=51.70 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|+|..|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999986
No 463
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.29 E-value=0.069 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|+|+|.+|+|||||+.++....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998763
No 464
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.26 E-value=0.2 Score=49.37 Aligned_cols=23 Identities=22% Similarity=0.047 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
....++|++|.||||+|+.+++.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46788999999999999999874
No 465
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.22 E-value=0.066 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.++.-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999876
No 466
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.19 E-value=0.077 Score=47.25 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|+|+|.+|+|||||..++....
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998763
No 467
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.18 E-value=0.082 Score=47.19 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999876
No 468
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.16 E-value=0.24 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.+.|.|..|.||||+...+.-+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhc
Confidence 57899999999999876655443
No 469
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.16 E-value=0.075 Score=49.65 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+||.|++|+||||+|+.+...
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999876
No 470
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.15 E-value=0.14 Score=51.21 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccch
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKF 47 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~ 47 (692)
.+++.+.|-||+||||+|..++.. ....=..++-|+.+...+.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~--la~~g~~vllid~D~~~~l 58 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQ--LAKVRRSVLLLSTDPAHNL 58 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH--HTTSSSCEEEEECCSSCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH--HHhCCCcEEEEECCCCCCh
Confidence 467888999999999999999887 4333234566777655443
No 471
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.15 E-value=0.11 Score=53.03 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=31.1
Q ss_pred CceEEEEEc-CCCCcHHHHHHHHHcccchhhcccccceEEecCccc
Q 048083 2 THQIIAILG-ERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAK 46 (692)
Q Consensus 2 ~~~vv~I~G-~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~ 46 (692)
..++|+|+| -||+||||+|..++.. ....=..++.|+.....+
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~--La~~g~rVlliD~D~~~~ 185 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIA--HANMGKKVFYLNIEQCGT 185 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHH--HHHHTCCEEEEECCTTCC
T ss_pred CceEEEEECCCCCChHHHHHHHHHHH--HHhCCCCEEEEECCCCCC
Confidence 458899985 9999999999999887 444323466777763333
No 472
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.13 E-value=0.066 Score=54.61 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.|.++|++|+|||++|+++++.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999987
No 473
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.11 E-value=0.11 Score=46.39 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHccc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
...|+|+|.+|+|||||..++....
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4578999999999999999998763
No 474
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.10 E-value=0.2 Score=61.31 Aligned_cols=85 Identities=21% Similarity=0.214 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchHHHHHHHHHHhhhhhhh---ccCCChhHHHHHHHHH
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFRDVLIDILQQIDDETLV---EASAPEADLVSSLTTL 80 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 80 (692)
+++.|+|.+|+||||||.+++.. ....=..++|++.....+.. .++.+...... ....+.++....++..
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~l 456 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence 58899999999999999999988 43222346777766655432 13444322110 0234556666666554
Q ss_pred h-ccccEEEEEeCCCC
Q 048083 81 L-KEISYLIVVEDVET 95 (692)
Q Consensus 81 L-~~k~~LlVLDdv~~ 95 (692)
. ..+.-+||+|-+..
T Consensus 457 v~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 457 ARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHTCCSEEEESCGGG
T ss_pred HHhcCCcEEEECCHHH
Confidence 4 34566999999864
No 475
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.08 E-value=0.11 Score=47.17 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred ccCCcccceEEEecC-ccccCcchhhhhHHHhhhccCCcceEEEEeecCCCCC-----CCChhhhccccccceeeccCCC
Q 048083 325 LDRSCHLRTYVAFDN-RIYCSPAIEISTFLDKIISNRGLVLLTVLDLEGVYKP-----KLSDHVIGKLLHLSYLGLRSTF 398 (692)
Q Consensus 325 ~~~~~~lr~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~~l~~L~~L~l~~~~ 398 (692)
..+-+.|+.|.+.++ .+... -...+...+ ..-..|+.|+|++|.+. .+-.. +..-+.|+.|+|++|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~----ga~~la~aL--~~N~~L~~L~L~~n~igd~ga~alA~a-L~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKE----RIRSLIEAA--CNSKHIEKFSLANTAISDSEARGLIEL-IETSPSLRVLNVESNF 109 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHH----HHHHHHHHH--TTCSCCCEEECTTSCCBHHHHTTHHHH-HHHCSSCCEEECCSSB
T ss_pred HhcCCCccEEECCCCCCCCHH----HHHHHHHHH--hhCCCcCEEEccCCCCChHHHHHHHHH-HhcCCccCeEecCCCc
Q ss_pred c-----cccCccccCCCCCeEEecCCccc--------eecChhhhccccCceeeccccc
Q 048083 399 I-----DSLPNSVGNLRYLETLDVKHTKL--------RYLPDSIWKAKKLQHLYLNWIH 444 (692)
Q Consensus 399 i-----~~lp~~~~~l~~L~~L~L~~~~l--------~~lp~~~~~l~~L~~L~l~~~~ 444 (692)
| ..+-..+..-..|++|+|+++.. ..+...+..-+.|+.|+++.+.
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
No 476
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.08 E-value=0.17 Score=47.71 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
..|+|.|+.|+||||+|+.+...
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999987
No 477
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.07 E-value=0.2 Score=56.60 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
-+.|+|.+|+|||++|+.+++.
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999987
No 478
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.07 E-value=0.076 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+++.|+|..|+||||+|..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999887776
No 479
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.04 E-value=0.097 Score=50.03 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=29.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcccchhhcccccceEEecCccchH
Q 048083 6 IAILGERGSGKTTLARTVYDRVDVKRHFAKRAWIRVRGDAKFR 48 (692)
Q Consensus 6 v~I~G~gGiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 48 (692)
|+|.|-||+||||+|..++.. ....=..++-|+.+...+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~--la~~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKI--MASDYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHH--HTTTCSCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCcChH
Confidence 677999999999999999887 33321345667776554433
No 480
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.02 E-value=0.084 Score=47.62 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+.+|+|..|.|||||+.+++.-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998653
No 481
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.02 E-value=0.081 Score=54.42 Aligned_cols=92 Identities=12% Similarity=0.224 Sum_probs=50.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcccchhh-------cc-c-ccceEEecCcc-chHHHHHHHHHH--hhhhhh--hccCCC
Q 048083 4 QIIAILGERGSGKTTLARTVYDRVDVKR-------HF-A-KRAWIRVRGDA-KFRDVLIDILQQ--IDDETL--VEASAP 69 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~~~~~-------~F-~-~~~wv~~~~~~-~~~~~~~~i~~~--l~~~~~--~~~~~~ 69 (692)
+.++|.|..|+|||+|+..++++....+ .- + .++++-+.+.. ...++...+... +..... ......
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 4568999999999999999998844311 11 1 34565565543 333444443331 000000 001111
Q ss_pred -hhH-----HHHHHHHHhc---cccEEEEEeCCCC
Q 048083 70 -EAD-----LVSSLTTLLK---EISYLIVVEDVET 95 (692)
Q Consensus 70 -~~~-----~~~~l~~~L~---~k~~LlVLDdv~~ 95 (692)
..+ ..-.+.++++ ++.+|+++||+-.
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111 1223455554 6899999999865
No 482
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.01 E-value=0.08 Score=53.29 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|+|..|.|||||++.+..-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 57999999999999999999876
No 483
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.00 E-value=0.069 Score=54.75 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|.++|++|+|||++|+++++.
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999987
No 484
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.95 E-value=0.082 Score=46.57 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|+|+|.+|+|||||..++....
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57999999999999999998764
No 485
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.93 E-value=0.087 Score=47.93 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHccc
Q 048083 4 QIIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
..|+|+|.+|+|||||..++....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998763
No 486
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.91 E-value=0.095 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...|+|+|.+|+|||||..++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999876
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.89 E-value=0.1 Score=45.98 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+-|.|.|.+|+||||+|.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 45789999999999999999886
No 488
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.86 E-value=0.071 Score=49.81 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
+|+|+|+.|+||||+|+.+...
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999876
No 489
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.83 E-value=0.082 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|+|.+|+|||||+..+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999876
No 490
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.82 E-value=0.11 Score=54.15 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=48.1
Q ss_pred eEEEEEcCCCCcHHHHHH-HHHcccchhhcccc-cceEEecCcc-chHHHHHHHHHHhhh-hhh---hccCCChhH----
Q 048083 4 QIIAILGERGSGKTTLAR-TVYDRVDVKRHFAK-RAWIRVRGDA-KFRDVLIDILQQIDD-ETL---VEASAPEAD---- 72 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~-~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-~~~---~~~~~~~~~---- 72 (692)
+.++|.|..|+|||+||. .+.+. . .-+. ++++-+.+.. ...++.+.+...=.. ... .........
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 467999999999999965 77777 2 2453 3566666654 333444444331000 000 001111111
Q ss_pred --HHHHHHHHh--ccccEEEEEeCCCC
Q 048083 73 --LVSSLTTLL--KEISYLIVVEDVET 95 (692)
Q Consensus 73 --~~~~l~~~L--~~k~~LlVLDdv~~ 95 (692)
..-.+.+++ +++.+||++||+-.
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 111233333 47899999999865
No 491
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.78 E-value=0.088 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|+|.+|+|||||..++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
No 492
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.77 E-value=0.087 Score=46.60 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|+|+|.+|+|||||..++....
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998663
No 493
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.77 E-value=0.064 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHcc
Q 048083 3 HQIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 3 ~~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
...|+|.|..|+||||+|+.+.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 494
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.69 E-value=0.089 Score=52.89 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+++|.|+.|.|||||.+.++.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 47899999999999999999886
No 495
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.69 E-value=0.09 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|+|+|.+|+|||||..++..+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998764
No 496
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.68 E-value=0.091 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|+|+|.+|+|||||..++....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998664
No 497
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.68 E-value=0.078 Score=46.73 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 048083 5 IIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.|+|+|.+|+|||||..++...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4799999999999999999765
No 498
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.66 E-value=0.091 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|+|+|.+|+|||||..++....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998653
No 499
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.64 E-value=0.1 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcc
Q 048083 4 QIIAILGERGSGKTTLARTVYDR 26 (692)
Q Consensus 4 ~vv~I~G~gGiGKTtLa~~~~~~ 26 (692)
.+|+|+||+|+||+|.|..+.+.
T Consensus 12 ~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 12 LVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999988664
No 500
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.61 E-value=0.092 Score=47.47 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 048083 5 IIAILGERGSGKTTLARTVYDRV 27 (692)
Q Consensus 5 vv~I~G~gGiGKTtLa~~~~~~~ 27 (692)
.|+|+|.+|+|||||+..+....
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999887663
Done!