Query 048084
Match_columns 967
No_of_seqs 594 out of 4191
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-84 3.7E-89 759.8 43.3 659 2-706 1-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.9E-62 1.5E-66 605.0 48.2 687 172-946 179-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.8E-42 1.5E-46 366.1 15.5 278 182-466 1-285 (287)
4 KOG0444 Cytoskeletal regulator 99.9 9.9E-28 2.1E-32 252.3 -5.4 343 539-944 32-376 (1255)
5 PLN00113 leucine-rich repeat r 99.9 1.3E-24 2.8E-29 272.7 16.6 298 614-943 155-465 (968)
6 PLN00113 leucine-rich repeat r 99.9 1.6E-24 3.4E-29 272.1 14.9 360 539-942 118-487 (968)
7 KOG4194 Membrane glycoprotein 99.9 7.1E-25 1.5E-29 229.8 3.2 348 539-939 78-448 (873)
8 KOG4194 Membrane glycoprotein 99.9 8.2E-25 1.8E-29 229.4 2.6 339 539-940 125-477 (873)
9 KOG0444 Cytoskeletal regulator 99.9 2.9E-25 6.4E-30 233.8 -4.8 355 521-938 37-394 (1255)
10 KOG0472 Leucine-rich repeat pr 99.8 3.4E-23 7.3E-28 208.0 -5.7 151 540-708 69-219 (565)
11 PLN03210 Resistant to P. syrin 99.8 2.8E-20 6E-25 232.9 18.3 319 539-923 589-910 (1153)
12 KOG0472 Leucine-rich repeat pr 99.8 8.4E-22 1.8E-26 198.1 -10.2 349 540-941 46-469 (565)
13 KOG0618 Serine/threonine phosp 99.7 1.4E-19 3.1E-24 201.0 -4.0 235 672-942 242-488 (1081)
14 KOG0618 Serine/threonine phosp 99.7 2.2E-19 4.7E-24 199.6 -4.5 140 531-686 13-152 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 3E-15 6.5E-20 173.2 13.1 254 542-918 204-457 (788)
16 KOG4237 Extracellular matrix p 99.5 4.4E-15 9.5E-20 150.1 3.5 270 539-829 67-358 (498)
17 PRK04841 transcriptional regul 99.5 2.3E-12 4.9E-17 161.6 26.8 297 172-516 9-332 (903)
18 PRK15387 E3 ubiquitin-protein 99.5 2.6E-13 5.6E-18 157.3 14.5 235 539-887 222-456 (788)
19 PRK15370 E3 ubiquitin-protein 99.5 8E-14 1.7E-18 162.8 8.8 135 540-704 179-313 (754)
20 PRK15370 E3 ubiquitin-protein 99.5 1.1E-13 2.3E-18 161.8 9.2 248 567-917 179-426 (754)
21 PRK00411 cdc6 cell division co 99.4 7.4E-11 1.6E-15 132.2 29.8 317 174-506 27-375 (394)
22 KOG0617 Ras suppressor protein 99.4 3.6E-15 7.8E-20 132.9 -5.8 164 590-838 30-194 (264)
23 KOG0617 Ras suppressor protein 99.4 5.8E-15 1.2E-19 131.6 -5.0 149 539-705 33-183 (264)
24 KOG4237 Extracellular matrix p 99.3 4.9E-14 1.1E-18 142.6 -4.4 282 548-885 55-355 (498)
25 COG2909 MalT ATP-dependent tra 99.3 2.3E-10 5.1E-15 128.5 23.7 302 171-518 13-340 (894)
26 TIGR03015 pepcterm_ATPase puta 99.3 4E-10 8.7E-15 119.1 22.7 183 203-390 42-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.3 1.9E-09 4.1E-14 119.5 28.2 304 174-492 12-351 (365)
28 KOG4658 Apoptotic ATPase [Sign 99.3 3.3E-12 7.2E-17 151.7 5.8 247 539-844 545-798 (889)
29 PF01637 Arch_ATPase: Archaeal 99.2 3.1E-11 6.7E-16 125.1 11.1 194 179-385 1-233 (234)
30 PRK00080 ruvB Holliday junctio 99.2 1.9E-10 4.1E-15 124.4 14.7 280 175-492 23-311 (328)
31 cd00116 LRR_RI Leucine-rich re 99.2 1.6E-12 3.5E-17 141.8 -1.7 120 560-681 17-147 (319)
32 cd00116 LRR_RI Leucine-rich re 99.1 2.9E-12 6.3E-17 139.8 -3.2 106 571-681 3-118 (319)
33 TIGR00635 ruvB Holliday juncti 99.1 6.9E-10 1.5E-14 119.5 15.0 278 177-492 4-290 (305)
34 PF05729 NACHT: NACHT domain 99.0 2.2E-09 4.7E-14 104.4 11.7 143 205-353 1-163 (166)
35 PTZ00112 origin recognition co 99.0 1.6E-07 3.4E-12 106.9 25.5 301 175-490 753-1085(1164)
36 COG3899 Predicted ATPase [Gene 98.9 5.4E-08 1.2E-12 116.8 20.3 315 178-516 1-386 (849)
37 KOG0532 Leucine-rich repeat (L 98.9 8E-11 1.7E-15 125.3 -4.4 194 544-764 55-248 (722)
38 KOG4341 F-box protein containi 98.9 1.8E-10 3.8E-15 118.4 -2.9 146 788-945 291-441 (483)
39 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3E-14 112.6 0.5 140 748-916 195-336 (505)
40 PF14580 LRR_9: Leucine-rich r 98.8 8E-09 1.7E-13 98.1 5.4 129 562-706 15-151 (175)
41 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.5E-13 97.1 5.6 123 539-680 19-149 (175)
42 PTZ00202 tuzin; Provisional 98.7 2.7E-06 5.9E-11 89.9 23.3 168 170-353 255-434 (550)
43 PRK13342 recombination factor 98.7 5E-07 1.1E-11 100.9 18.7 180 176-389 11-199 (413)
44 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.8E-07 3.9E-12 96.0 14.0 172 182-390 22-205 (226)
45 COG2256 MGS1 ATPase related to 98.7 8E-07 1.7E-11 92.2 18.1 171 176-382 29-208 (436)
46 PRK06893 DNA replication initi 98.7 3.5E-07 7.5E-12 93.1 15.4 156 204-390 39-207 (229)
47 PF13401 AAA_22: AAA domain; P 98.7 4.7E-08 1E-12 90.6 7.9 118 203-322 3-125 (131)
48 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.4E-13 114.9 3.6 198 570-835 97-295 (394)
49 PRK12402 replication factor C 98.7 6.5E-07 1.4E-11 98.2 17.3 201 176-387 14-227 (337)
50 COG1474 CDC6 Cdc6-related prot 98.7 8.3E-06 1.8E-10 88.0 25.0 201 176-378 16-229 (366)
51 KOG1909 Ran GTPase-activating 98.6 7.3E-09 1.6E-13 104.5 1.4 244 561-851 25-309 (382)
52 KOG4341 F-box protein containi 98.6 1.3E-09 2.8E-14 112.2 -4.2 268 593-947 138-418 (483)
53 PRK14961 DNA polymerase III su 98.6 1.7E-06 3.7E-11 94.7 19.2 192 176-384 15-218 (363)
54 KOG3207 Beta-tubulin folding c 98.6 1.5E-08 3.3E-13 105.0 2.7 210 539-763 121-339 (505)
55 PRK07003 DNA polymerase III su 98.6 3.3E-06 7.2E-11 96.2 21.0 197 176-388 15-223 (830)
56 PRK04195 replication factor C 98.6 9E-06 2E-10 92.8 24.2 250 174-465 11-271 (482)
57 PRK00440 rfc replication facto 98.6 2.6E-06 5.7E-11 92.6 18.2 184 175-385 15-202 (319)
58 PRK14949 DNA polymerase III su 98.5 2.6E-06 5.7E-11 99.0 18.6 184 176-386 15-220 (944)
59 KOG0532 Leucine-rich repeat (L 98.5 3.5E-09 7.7E-14 113.0 -4.3 175 592-805 74-248 (722)
60 PF05496 RuvB_N: Holliday junc 98.5 1.5E-06 3.3E-11 84.2 13.9 184 175-391 22-226 (233)
61 PRK14963 DNA polymerase III su 98.5 3.5E-07 7.6E-12 103.1 10.9 195 177-384 14-215 (504)
62 PRK14960 DNA polymerase III su 98.5 3.5E-06 7.6E-11 95.0 18.5 194 176-385 14-218 (702)
63 PRK05564 DNA polymerase III su 98.5 2.4E-06 5.3E-11 91.8 16.8 178 177-384 4-188 (313)
64 PF13191 AAA_16: AAA ATPase do 98.5 1E-07 2.2E-12 94.4 5.7 49 178-229 1-49 (185)
65 PF13173 AAA_14: AAA domain 98.5 4.7E-07 1E-11 82.9 9.2 120 204-345 2-127 (128)
66 KOG1259 Nischarin, modulator o 98.5 2.3E-08 5E-13 98.1 0.3 128 563-706 281-410 (490)
67 cd00009 AAA The AAA+ (ATPases 98.5 1.3E-06 2.7E-11 83.1 11.7 124 180-323 1-130 (151)
68 KOG1259 Nischarin, modulator o 98.5 2.1E-08 4.5E-13 98.5 -0.8 125 539-682 284-410 (490)
69 PRK08903 DnaA regulatory inact 98.5 3.3E-06 7.2E-11 86.4 15.3 153 203-390 41-203 (227)
70 PLN03025 replication factor C 98.5 3.2E-06 7E-11 91.1 15.8 184 175-383 11-197 (319)
71 KOG1909 Ran GTPase-activating 98.5 1.9E-08 4.2E-13 101.5 -1.4 87 588-681 25-130 (382)
72 PRK06645 DNA polymerase III su 98.5 7E-06 1.5E-10 92.1 18.7 195 176-383 20-226 (507)
73 COG3903 Predicted ATPase [Gene 98.4 9.4E-07 2E-11 92.5 10.3 236 203-449 13-258 (414)
74 PRK12323 DNA polymerase III su 98.4 4.6E-06 1E-10 93.8 16.3 198 176-386 15-225 (700)
75 PRK09112 DNA polymerase III su 98.4 5.7E-06 1.2E-10 89.0 16.3 200 172-386 18-240 (351)
76 PRK08691 DNA polymerase III su 98.4 7E-06 1.5E-10 93.6 17.5 195 176-386 15-220 (709)
77 PRK14956 DNA polymerase III su 98.4 5.1E-06 1.1E-10 91.1 15.8 196 176-383 17-219 (484)
78 PRK14957 DNA polymerase III su 98.4 1.3E-05 2.7E-10 90.7 19.0 186 176-388 15-223 (546)
79 PRK14962 DNA polymerase III su 98.4 1.6E-05 3.4E-10 89.1 19.5 202 175-403 12-239 (472)
80 PRK05896 DNA polymerase III su 98.4 8.9E-06 1.9E-10 91.8 17.4 196 176-387 15-222 (605)
81 TIGR02397 dnaX_nterm DNA polym 98.4 1.8E-05 4E-10 87.4 19.6 185 176-387 13-219 (355)
82 PRK07994 DNA polymerase III su 98.4 1.2E-05 2.6E-10 92.3 18.1 196 176-387 15-221 (647)
83 PF05621 TniB: Bacterial TniB 98.4 2.1E-05 4.6E-10 80.2 17.5 203 178-384 35-259 (302)
84 TIGR02903 spore_lon_C ATP-depe 98.4 9.4E-06 2E-10 94.5 17.0 172 177-354 154-367 (615)
85 PRK07471 DNA polymerase III su 98.4 2.9E-06 6.3E-11 91.8 11.9 199 173-386 15-238 (365)
86 PRK14964 DNA polymerase III su 98.3 1.8E-05 3.9E-10 88.0 18.2 182 176-383 12-214 (491)
87 PF14516 AAA_35: AAA-like doma 98.3 0.00012 2.5E-09 79.1 23.7 204 173-393 7-246 (331)
88 PRK08727 hypothetical protein; 98.3 1.7E-05 3.7E-10 80.9 16.2 148 205-383 42-201 (233)
89 PRK14951 DNA polymerase III su 98.3 1.7E-05 3.7E-10 90.9 17.7 198 176-386 15-225 (618)
90 PRK09087 hypothetical protein; 98.3 1.8E-05 3.9E-10 79.9 16.1 145 204-390 44-199 (226)
91 PRK14958 DNA polymerase III su 98.3 1.6E-05 3.5E-10 90.0 17.3 180 176-385 15-219 (509)
92 PRK14955 DNA polymerase III su 98.3 9.4E-06 2E-10 90.0 15.2 201 176-385 15-227 (397)
93 PF00308 Bac_DnaA: Bacterial d 98.3 1.9E-05 4.1E-10 79.5 16.0 188 179-389 11-211 (219)
94 PRK13341 recombination factor 98.3 7.2E-06 1.6E-10 96.3 14.7 175 176-383 27-214 (725)
95 KOG2120 SCF ubiquitin ligase, 98.3 4.4E-08 9.4E-13 96.4 -3.1 81 594-681 186-270 (419)
96 PRK14087 dnaA chromosomal repl 98.3 2.2E-05 4.7E-10 87.9 17.4 171 204-390 141-323 (450)
97 PLN03150 hypothetical protein; 98.3 1.6E-06 3.4E-11 102.0 8.8 105 568-682 420-526 (623)
98 COG4886 Leucine-rich repeat (L 98.3 6.2E-07 1.4E-11 100.7 5.3 176 563-762 113-289 (394)
99 PRK08084 DNA replication initi 98.3 2.3E-05 4.9E-10 80.1 16.0 156 204-390 45-213 (235)
100 KOG2028 ATPase related to the 98.3 1.6E-05 3.4E-10 80.9 14.3 158 202-381 160-331 (554)
101 PRK09111 DNA polymerase III su 98.3 3.1E-05 6.7E-10 89.1 18.2 200 175-387 22-234 (598)
102 PRK07940 DNA polymerase III su 98.3 2.5E-05 5.5E-10 85.3 16.5 193 177-386 5-213 (394)
103 COG2255 RuvB Holliday junction 98.3 3.1E-05 6.8E-10 76.6 15.2 184 174-390 23-227 (332)
104 PRK14969 DNA polymerase III su 98.3 2.6E-05 5.6E-10 89.1 17.2 181 176-386 15-221 (527)
105 cd01128 rho_factor Transcripti 98.2 1.6E-06 3.6E-11 88.1 6.2 90 203-293 15-113 (249)
106 TIGR00678 holB DNA polymerase 98.2 4E-05 8.6E-10 75.8 15.9 91 282-382 95-187 (188)
107 PRK05642 DNA replication initi 98.2 2.9E-05 6.3E-10 79.2 15.0 156 204-390 45-212 (234)
108 TIGR01242 26Sp45 26S proteasom 98.2 2.2E-05 4.7E-10 86.4 15.0 181 174-380 119-328 (364)
109 KOG2227 Pre-initiation complex 98.2 3.7E-05 8.1E-10 81.5 15.6 214 174-389 147-375 (529)
110 PRK14959 DNA polymerase III su 98.2 6.9E-05 1.5E-09 85.3 18.6 198 176-390 15-225 (624)
111 PRK07133 DNA polymerase III su 98.2 7.3E-05 1.6E-09 86.4 18.5 196 176-385 17-218 (725)
112 PRK14950 DNA polymerase III su 98.2 2.7E-05 5.9E-10 90.7 15.2 197 176-388 15-223 (585)
113 PRK14954 DNA polymerase III su 98.2 9.4E-05 2E-09 85.2 19.0 197 176-381 15-223 (620)
114 PRK14952 DNA polymerase III su 98.2 0.00012 2.6E-09 83.8 19.7 199 176-390 12-224 (584)
115 PRK14970 DNA polymerase III su 98.1 0.0001 2.2E-09 81.6 18.4 183 176-384 16-207 (367)
116 PRK07764 DNA polymerase III su 98.1 7.9E-05 1.7E-09 88.8 18.2 191 177-383 15-218 (824)
117 PRK08451 DNA polymerase III su 98.1 0.00013 2.9E-09 82.0 18.9 182 176-387 13-219 (535)
118 KOG2982 Uncharacterized conser 98.1 9E-07 2E-11 87.3 1.5 82 749-847 198-286 (418)
119 PRK14953 DNA polymerase III su 98.1 0.00014 3.1E-09 81.9 19.3 184 177-387 16-221 (486)
120 PF13855 LRR_8: Leucine rich r 98.1 2.6E-06 5.7E-11 66.1 3.8 56 624-681 2-59 (61)
121 PRK06305 DNA polymerase III su 98.1 0.00013 2.7E-09 81.9 18.1 179 176-382 16-218 (451)
122 KOG0531 Protein phosphatase 1, 98.1 7.5E-07 1.6E-11 100.0 0.4 56 790-849 207-264 (414)
123 CHL00181 cbbX CbbX; Provisiona 98.1 0.00026 5.7E-09 74.3 19.1 137 204-356 59-212 (287)
124 PRK09376 rho transcription ter 98.1 7.5E-06 1.6E-10 86.5 7.3 103 185-293 155-266 (416)
125 KOG0531 Protein phosphatase 1, 98.1 3.8E-07 8.2E-12 102.4 -2.4 82 589-681 91-172 (414)
126 PF13855 LRR_8: Leucine rich r 98.1 4.7E-06 1E-10 64.7 4.5 57 594-658 2-60 (61)
127 KOG2120 SCF ubiquitin ligase, 98.1 1.3E-07 2.8E-12 93.2 -5.4 107 566-681 185-296 (419)
128 PF05673 DUF815: Protein of un 98.1 0.00015 3.2E-09 71.7 15.4 126 172-324 22-152 (249)
129 PRK14971 DNA polymerase III su 98.0 0.00019 4.2E-09 83.3 18.6 177 177-384 17-220 (614)
130 TIGR02881 spore_V_K stage V sp 98.0 0.00011 2.3E-09 76.8 15.1 162 178-355 7-193 (261)
131 PHA02544 44 clamp loader, smal 98.0 7E-05 1.5E-09 81.1 14.2 151 174-351 18-171 (316)
132 PRK03992 proteasome-activating 98.0 5.9E-05 1.3E-09 83.2 13.6 180 174-379 128-336 (389)
133 PLN03150 hypothetical protein; 98.0 6.9E-06 1.5E-10 96.6 6.5 93 594-693 419-512 (623)
134 COG3267 ExeA Type II secretory 98.0 0.00049 1.1E-08 67.7 17.8 182 203-389 50-248 (269)
135 PRK06620 hypothetical protein; 98.0 0.00028 6E-09 70.7 16.7 139 205-387 45-190 (214)
136 PRK14948 DNA polymerase III su 98.0 0.00033 7.1E-09 81.4 19.2 198 177-388 16-224 (620)
137 KOG2543 Origin recognition com 98.0 0.00054 1.2E-08 71.0 18.3 167 175-352 4-192 (438)
138 TIGR00362 DnaA chromosomal rep 98.0 0.00025 5.3E-09 79.5 17.7 161 204-386 136-310 (405)
139 PRK06647 DNA polymerase III su 98.0 0.00037 8.1E-09 80.0 19.2 195 176-386 15-220 (563)
140 TIGR03345 VI_ClpV1 type VI sec 98.0 7.1E-05 1.5E-09 90.4 13.9 155 177-353 187-363 (852)
141 TIGR02880 cbbX_cfxQ probable R 97.9 0.00033 7.2E-09 73.7 16.9 135 205-355 59-210 (284)
142 PRK14965 DNA polymerase III su 97.9 0.00044 9.6E-09 80.2 19.4 196 176-387 15-222 (576)
143 PRK11331 5-methylcytosine-spec 97.9 4.3E-05 9.2E-10 82.9 10.3 120 177-308 175-298 (459)
144 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 57.0 3.9 38 624-663 2-39 (44)
145 PRK14088 dnaA chromosomal repl 97.9 0.0004 8.7E-09 77.8 18.3 182 204-405 130-331 (440)
146 KOG0989 Replication factor C, 97.9 0.00013 2.8E-09 73.2 12.3 192 173-385 32-229 (346)
147 TIGR02639 ClpA ATP-dependent C 97.9 0.00015 3.2E-09 87.2 14.5 156 177-353 182-358 (731)
148 PF10443 RNA12: RNA12 protein; 97.9 0.001 2.2E-08 71.3 18.8 211 182-404 1-297 (431)
149 TIGR00767 rho transcription te 97.8 6.1E-05 1.3E-09 80.3 9.1 91 203-294 167-266 (415)
150 PRK00149 dnaA chromosomal repl 97.8 0.00046 1E-08 78.3 16.9 162 203-386 147-322 (450)
151 PRK15386 type III secretion pr 97.8 4.5E-05 9.7E-10 81.8 8.0 65 589-665 48-112 (426)
152 PRK05563 DNA polymerase III su 97.8 0.00095 2.1E-08 77.0 19.4 194 175-384 14-218 (559)
153 COG0593 DnaA ATPase involved i 97.8 0.0027 5.9E-08 68.5 21.4 136 203-357 112-261 (408)
154 CHL00095 clpC Clp protease ATP 97.8 0.00018 3.8E-09 87.7 14.0 155 177-352 179-353 (821)
155 KOG1859 Leucine-rich repeat pr 97.8 6.9E-07 1.5E-11 98.5 -5.9 84 586-681 180-264 (1096)
156 PRK12422 chromosomal replicati 97.8 0.00081 1.8E-08 75.1 17.9 155 204-380 141-307 (445)
157 PRK14086 dnaA chromosomal repl 97.8 0.00082 1.8E-08 76.3 17.7 163 204-386 314-488 (617)
158 COG0466 Lon ATP-dependent Lon 97.8 0.00044 9.6E-09 77.6 14.9 168 174-353 320-508 (782)
159 PRK07399 DNA polymerase III su 97.8 0.0012 2.5E-08 70.3 17.5 196 177-386 4-221 (314)
160 TIGR03689 pup_AAA proteasome A 97.8 0.00064 1.4E-08 76.2 15.9 169 176-354 181-379 (512)
161 PRK05707 DNA polymerase III su 97.7 0.001 2.2E-08 71.1 16.8 97 282-386 105-203 (328)
162 TIGR00763 lon ATP-dependent pr 97.7 0.002 4.3E-08 78.1 20.9 166 176-353 319-505 (775)
163 KOG4579 Leucine-rich repeat (L 97.7 8.1E-06 1.7E-10 71.3 -0.2 84 589-681 49-133 (177)
164 PF00004 AAA: ATPase family as 97.7 9.7E-05 2.1E-09 68.3 6.9 96 207-322 1-111 (132)
165 TIGR00602 rad24 checkpoint pro 97.6 0.00034 7.3E-09 80.6 11.9 55 172-227 79-133 (637)
166 PF12799 LRR_4: Leucine Rich r 97.6 6.1E-05 1.3E-09 53.3 3.7 41 593-641 1-41 (44)
167 KOG2004 Mitochondrial ATP-depe 97.6 0.00097 2.1E-08 74.5 14.3 168 174-353 408-596 (906)
168 PRK11034 clpA ATP-dependent Cl 97.6 0.0011 2.3E-08 78.8 15.1 155 178-353 187-362 (758)
169 PTZ00454 26S protease regulato 97.6 0.0018 3.8E-08 71.2 15.6 181 174-379 142-350 (398)
170 smart00382 AAA ATPases associa 97.6 0.00062 1.3E-08 63.9 10.8 88 205-296 3-91 (148)
171 PRK10536 hypothetical protein; 97.5 0.00079 1.7E-08 67.6 11.0 135 177-323 55-213 (262)
172 PRK08116 hypothetical protein; 97.5 0.00054 1.2E-08 71.2 10.3 103 205-322 115-220 (268)
173 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0011 2.3E-08 81.2 14.3 154 177-353 173-349 (852)
174 PTZ00361 26 proteosome regulat 97.5 0.00041 8.8E-09 76.7 9.7 159 177-355 183-369 (438)
175 COG5238 RNA1 Ran GTPase-activa 97.5 4.9E-05 1.1E-09 74.4 2.2 123 561-688 25-173 (388)
176 PRK06090 DNA polymerase III su 97.5 0.012 2.6E-07 62.3 20.2 176 185-386 11-201 (319)
177 KOG3665 ZYG-1-like serine/thre 97.5 5.9E-05 1.3E-09 88.3 3.1 131 539-682 122-261 (699)
178 PRK10865 protein disaggregatio 97.4 0.0013 2.9E-08 79.9 14.2 155 177-353 178-354 (857)
179 PRK08058 DNA polymerase III su 97.4 0.0027 5.8E-08 68.5 15.1 162 178-351 6-180 (329)
180 PRK10787 DNA-binding ATP-depen 97.4 0.0013 2.8E-08 78.8 13.7 167 175-353 320-506 (784)
181 PRK08769 DNA polymerase III su 97.4 0.0045 9.7E-08 65.6 16.2 95 282-386 112-208 (319)
182 COG1373 Predicted ATPase (AAA+ 97.4 0.0024 5.2E-08 70.5 14.6 165 181-385 21-191 (398)
183 KOG4579 Leucine-rich repeat (L 97.4 3.1E-05 6.8E-10 67.7 -0.2 94 561-666 48-141 (177)
184 PRK06871 DNA polymerase III su 97.4 0.0063 1.4E-07 64.6 16.9 175 186-383 11-200 (325)
185 COG1222 RPT1 ATP-dependent 26S 97.4 0.0056 1.2E-07 63.3 15.5 178 177-380 151-357 (406)
186 COG2607 Predicted ATPase (AAA+ 97.4 0.014 3.1E-07 56.8 17.3 123 174-323 57-183 (287)
187 CHL00176 ftsH cell division pr 97.4 0.0032 6.9E-08 73.4 15.4 178 176-378 182-386 (638)
188 PF13177 DNA_pol3_delta2: DNA 97.3 0.0031 6.8E-08 60.1 12.6 137 181-341 1-162 (162)
189 PRK12377 putative replication 97.3 0.00052 1.1E-08 69.9 7.6 102 204-322 101-205 (248)
190 TIGR03346 chaperone_ClpB ATP-d 97.3 0.011 2.3E-07 72.6 20.1 137 177-322 565-717 (852)
191 TIGR02640 gas_vesic_GvpN gas v 97.3 0.01 2.2E-07 61.8 17.0 124 184-323 9-161 (262)
192 PRK15386 type III secretion pr 97.3 0.00055 1.2E-08 73.6 7.3 143 783-941 44-188 (426)
193 KOG1859 Leucine-rich repeat pr 97.3 1.1E-05 2.3E-10 89.4 -5.6 124 540-683 165-291 (1096)
194 COG0542 clpA ATP-binding subun 97.3 0.009 2E-07 69.6 17.5 135 177-322 491-643 (786)
195 TIGR01241 FtsH_fam ATP-depende 97.3 0.0053 1.1E-07 70.6 15.7 187 175-386 53-267 (495)
196 KOG1514 Origin recognition com 97.3 0.01 2.2E-07 66.9 16.9 174 176-355 395-591 (767)
197 KOG2982 Uncharacterized conser 97.3 0.00021 4.6E-09 71.0 3.5 88 563-658 68-157 (418)
198 PF01695 IstB_IS21: IstB-like 97.3 0.00048 1E-08 66.7 5.9 101 203-322 46-149 (178)
199 TIGR02639 ClpA ATP-dependent C 97.3 0.013 2.9E-07 70.6 19.4 121 177-310 454-580 (731)
200 PTZ00494 tuzin-like protein; P 97.2 0.029 6.3E-07 59.9 18.9 170 171-353 365-544 (664)
201 PRK08939 primosomal protein Dn 97.2 0.0017 3.7E-08 68.7 10.3 122 181-322 135-260 (306)
202 KOG0991 Replication factor C, 97.2 0.0012 2.6E-08 63.4 7.9 106 174-307 24-137 (333)
203 PRK08181 transposase; Validate 97.2 0.00096 2.1E-08 68.8 8.1 101 205-323 107-209 (269)
204 KOG2228 Origin recognition com 97.2 0.0037 8.1E-08 63.8 11.7 173 177-353 24-219 (408)
205 KOG0733 Nuclear AAA ATPase (VC 97.2 0.006 1.3E-07 67.2 13.8 190 176-390 189-410 (802)
206 PRK07993 DNA polymerase III su 97.2 0.0027 6E-08 68.1 11.3 178 185-384 10-202 (334)
207 KOG3665 ZYG-1-like serine/thre 97.2 0.00016 3.5E-09 84.8 2.0 109 565-682 121-231 (699)
208 PRK10865 protein disaggregatio 97.2 0.0048 1E-07 75.2 14.6 138 177-322 568-720 (857)
209 PRK07952 DNA replication prote 97.1 0.0022 4.9E-08 65.1 9.7 103 204-322 99-204 (244)
210 PRK06964 DNA polymerase III su 97.1 0.014 3E-07 62.6 16.0 93 282-386 131-225 (342)
211 PF07693 KAP_NTPase: KAP famil 97.1 0.022 4.8E-07 62.0 18.1 45 182-229 1-45 (325)
212 PF04665 Pox_A32: Poxvirus A32 97.1 0.0014 2.9E-08 65.7 7.6 37 204-242 13-49 (241)
213 PRK06526 transposase; Provisio 97.1 0.0011 2.3E-08 68.2 7.0 101 204-323 98-201 (254)
214 PRK04296 thymidine kinase; Pro 97.1 0.0013 2.7E-08 64.8 7.1 112 205-323 3-116 (190)
215 PF14532 Sigma54_activ_2: Sigm 97.1 0.00084 1.8E-08 62.3 5.5 107 180-322 1-109 (138)
216 PF02562 PhoH: PhoH-like prote 97.0 0.00072 1.6E-08 66.1 4.8 131 181-323 4-156 (205)
217 PRK06921 hypothetical protein; 97.0 0.0033 7E-08 65.3 9.8 99 204-322 117-224 (266)
218 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0028 6E-08 77.0 10.7 137 176-322 565-718 (852)
219 KOG1644 U2-associated snRNP A' 97.0 0.00068 1.5E-08 63.9 3.8 61 619-681 60-123 (233)
220 KOG1644 U2-associated snRNP A' 97.0 0.0012 2.5E-08 62.4 5.3 102 566-681 42-150 (233)
221 PRK09183 transposase/IS protei 96.9 0.0033 7.2E-08 65.1 9.0 101 204-322 102-205 (259)
222 PRK12608 transcription termina 96.9 0.0057 1.2E-07 65.2 10.7 103 184-292 118-229 (380)
223 KOG0741 AAA+-type ATPase [Post 96.9 0.024 5.2E-07 61.5 15.2 131 201-352 535-685 (744)
224 COG0470 HolB ATPase involved i 96.9 0.0062 1.4E-07 66.4 11.6 142 178-339 2-167 (325)
225 PRK08118 topology modulation p 96.9 0.00047 1E-08 66.1 2.4 35 205-239 2-37 (167)
226 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00091 2E-08 70.8 4.7 50 178-227 52-101 (361)
227 COG2884 FtsE Predicted ATPase 96.9 0.012 2.6E-07 55.3 11.2 125 203-330 27-204 (223)
228 COG2812 DnaX DNA polymerase II 96.9 0.0039 8.5E-08 69.5 9.4 189 177-381 16-215 (515)
229 PRK11889 flhF flagellar biosyn 96.9 0.015 3.2E-07 62.3 13.0 105 203-309 240-348 (436)
230 TIGR01243 CDC48 AAA family ATP 96.9 0.0083 1.8E-07 72.6 12.9 181 176-381 177-382 (733)
231 TIGR02974 phageshock_pspF psp 96.8 0.031 6.7E-07 60.2 15.5 131 179-322 1-143 (329)
232 PRK04132 replication factor C 96.8 0.032 7E-07 66.6 16.6 155 212-386 574-731 (846)
233 KOG1947 Leucine rich repeat pr 96.8 0.00033 7.1E-09 81.4 0.1 41 907-947 402-444 (482)
234 CHL00195 ycf46 Ycf46; Provisio 96.8 0.021 4.5E-07 64.5 14.3 180 177-380 228-429 (489)
235 CHL00095 clpC Clp protease ATP 96.8 0.0071 1.5E-07 73.9 11.4 136 177-322 509-661 (821)
236 PRK08699 DNA polymerase III su 96.8 0.0033 7.2E-08 67.2 7.6 71 282-352 112-184 (325)
237 PRK15429 formate hydrogenlyase 96.8 0.051 1.1E-06 65.4 18.4 135 177-323 376-521 (686)
238 PF07728 AAA_5: AAA domain (dy 96.8 0.00062 1.3E-08 63.5 1.7 89 207-308 2-90 (139)
239 TIGR02237 recomb_radB DNA repa 96.8 0.0037 8E-08 63.0 7.5 49 202-253 10-58 (209)
240 TIGR02902 spore_lonB ATP-depen 96.8 0.0077 1.7E-07 69.4 10.9 45 177-227 65-109 (531)
241 PF00158 Sigma54_activat: Sigm 96.8 0.0059 1.3E-07 58.4 8.3 131 179-322 1-143 (168)
242 COG5238 RNA1 Ran GTPase-activa 96.7 0.00097 2.1E-08 65.6 2.9 85 589-681 26-130 (388)
243 COG1484 DnaC DNA replication p 96.7 0.0062 1.3E-07 62.7 8.9 82 203-301 104-185 (254)
244 PRK06835 DNA replication prote 96.7 0.0085 1.8E-07 64.0 9.8 102 205-322 184-288 (329)
245 TIGR01243 CDC48 AAA family ATP 96.7 0.022 4.8E-07 69.0 14.6 179 177-380 453-657 (733)
246 PF00448 SRP54: SRP54-type pro 96.6 0.008 1.7E-07 59.2 8.6 89 204-294 1-94 (196)
247 KOG0730 AAA+-type ATPase [Post 96.6 0.041 9E-07 61.8 14.7 160 176-356 433-618 (693)
248 KOG2123 Uncharacterized conser 96.6 0.00022 4.7E-09 70.3 -2.5 99 565-677 18-123 (388)
249 PRK07261 topology modulation p 96.6 0.0055 1.2E-07 59.1 7.1 65 206-293 2-67 (171)
250 PRK05541 adenylylsulfate kinas 96.6 0.0069 1.5E-07 59.1 7.8 37 203-241 6-42 (176)
251 cd00544 CobU Adenosylcobinamid 96.6 0.0088 1.9E-07 57.2 8.3 79 207-292 2-82 (169)
252 PRK09361 radB DNA repair and r 96.6 0.0057 1.2E-07 62.4 7.6 46 203-251 22-67 (225)
253 PRK11034 clpA ATP-dependent Cl 96.6 0.011 2.3E-07 70.5 10.6 121 178-309 459-583 (758)
254 KOG0735 AAA+-type ATPase [Post 96.6 0.02 4.4E-07 64.3 11.9 161 203-387 430-617 (952)
255 KOG2035 Replication factor C, 96.6 0.033 7.2E-07 55.5 12.1 210 179-410 15-262 (351)
256 cd03214 ABC_Iron-Siderophores_ 96.5 0.029 6.2E-07 54.9 11.9 121 203-326 24-161 (180)
257 TIGR01650 PD_CobS cobaltochela 96.5 0.061 1.3E-06 56.7 14.7 63 176-251 44-106 (327)
258 COG1223 Predicted ATPase (AAA+ 96.5 0.068 1.5E-06 52.7 13.6 159 176-355 120-299 (368)
259 PRK05800 cobU adenosylcobinami 96.5 0.0062 1.3E-07 58.4 6.6 80 206-292 3-85 (170)
260 TIGR01817 nifA Nif-specific re 96.5 0.021 4.6E-07 66.5 12.3 134 175-322 194-340 (534)
261 cd01394 radB RadB. The archaea 96.5 0.0077 1.7E-07 61.1 7.6 43 203-247 18-60 (218)
262 cd03228 ABCC_MRP_Like The MRP 96.5 0.026 5.7E-07 54.6 10.9 118 203-327 27-159 (171)
263 KOG1947 Leucine rich repeat pr 96.5 0.0006 1.3E-08 79.2 -0.7 37 910-946 380-417 (482)
264 cd01393 recA_like RecA is a b 96.4 0.011 2.4E-07 60.4 8.7 90 203-293 18-124 (226)
265 KOG0734 AAA+-type ATPase conta 96.4 0.052 1.1E-06 59.1 13.5 51 178-228 305-361 (752)
266 COG0542 clpA ATP-binding subun 96.4 0.042 9.1E-07 64.2 13.7 155 177-352 170-345 (786)
267 COG1136 SalX ABC-type antimicr 96.4 0.041 9E-07 54.5 11.7 60 271-330 148-210 (226)
268 KOG0744 AAA+-type ATPase [Post 96.4 0.042 9.1E-07 56.0 11.8 80 204-293 177-260 (423)
269 KOG1969 DNA replication checkp 96.4 0.013 2.8E-07 66.2 9.0 90 201-308 323-412 (877)
270 PF13207 AAA_17: AAA domain; P 96.4 0.0024 5.3E-08 57.8 3.0 22 206-227 1-22 (121)
271 cd03247 ABCC_cytochrome_bd The 96.4 0.035 7.6E-07 54.2 11.3 119 203-327 27-161 (178)
272 PRK05703 flhF flagellar biosyn 96.4 0.039 8.5E-07 61.4 12.9 103 204-308 221-326 (424)
273 cd00983 recA RecA is a bacter 96.4 0.011 2.3E-07 62.6 8.0 85 202-293 53-143 (325)
274 PF13604 AAA_30: AAA domain; P 96.3 0.024 5.3E-07 56.0 10.1 104 205-323 19-131 (196)
275 COG4608 AppF ABC-type oligopep 96.3 0.018 3.8E-07 58.1 8.9 125 203-330 38-177 (268)
276 cd01120 RecA-like_NTPases RecA 96.3 0.018 4E-07 55.3 9.1 39 206-246 1-39 (165)
277 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.046 9.9E-07 51.1 11.3 106 203-327 25-131 (144)
278 cd03238 ABC_UvrA The excision 96.3 0.032 6.9E-07 53.8 10.4 123 203-337 20-161 (176)
279 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.015 3.1E-07 60.0 8.8 56 203-259 18-77 (235)
280 PRK06696 uridine kinase; Valid 96.3 0.0049 1.1E-07 62.6 5.1 44 181-227 2-45 (223)
281 cd03223 ABCD_peroxisomal_ALDP 96.3 0.055 1.2E-06 52.0 12.1 119 203-326 26-151 (166)
282 cd01131 PilT Pilus retraction 96.3 0.0084 1.8E-07 59.5 6.6 112 205-327 2-113 (198)
283 PRK15455 PrkA family serine pr 96.3 0.003 6.6E-08 70.4 3.6 50 178-227 77-126 (644)
284 KOG2123 Uncharacterized conser 96.3 0.00029 6.3E-09 69.4 -3.7 103 591-704 17-126 (388)
285 PF03215 Rad17: Rad17 cell cyc 96.3 0.015 3.3E-07 65.9 9.2 64 173-241 15-78 (519)
286 PRK11608 pspF phage shock prot 96.3 0.017 3.7E-07 62.2 9.3 133 178-322 7-150 (326)
287 PHA02244 ATPase-like protein 96.3 0.022 4.7E-07 60.6 9.6 99 206-322 121-230 (383)
288 PRK05022 anaerobic nitric oxid 96.2 0.029 6.2E-07 64.7 11.5 134 176-323 186-332 (509)
289 PRK12724 flagellar biosynthesi 96.2 0.02 4.3E-07 62.2 9.1 101 203-308 222-326 (432)
290 KOG0731 AAA+-type ATPase conta 96.2 0.06 1.3E-06 62.5 13.3 181 177-382 311-520 (774)
291 TIGR02012 tigrfam_recA protein 96.2 0.015 3.2E-07 61.5 7.8 85 202-293 53-143 (321)
292 PRK06067 flagellar accessory p 96.2 0.029 6.3E-07 57.6 10.0 87 202-293 23-130 (234)
293 COG1875 NYN ribonuclease and A 96.2 0.023 5E-07 59.0 8.8 131 179-322 226-387 (436)
294 cd03216 ABC_Carb_Monos_I This 96.2 0.024 5.2E-07 54.3 8.7 116 204-326 26-145 (163)
295 KOG2739 Leucine-rich acidic nu 96.2 0.0019 4.2E-08 63.8 1.1 61 620-681 62-126 (260)
296 PRK14722 flhF flagellar biosyn 96.1 0.044 9.6E-07 59.2 11.3 91 203-295 136-227 (374)
297 PF08423 Rad51: Rad51; InterP 96.1 0.016 3.4E-07 59.9 7.7 56 203-259 37-96 (256)
298 PRK12723 flagellar biosynthesi 96.1 0.039 8.4E-07 60.2 10.8 106 203-310 173-283 (388)
299 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.033 7.2E-07 52.1 8.8 117 205-324 3-139 (159)
300 TIGR03499 FlhF flagellar biosy 96.1 0.021 4.6E-07 60.0 8.5 88 203-292 193-281 (282)
301 PRK07132 DNA polymerase III su 96.1 0.27 5.9E-06 51.8 16.5 157 203-385 17-184 (299)
302 cd03115 SRP The signal recogni 96.1 0.047 1E-06 53.0 10.4 87 206-294 2-93 (173)
303 cd03222 ABC_RNaseL_inhibitor T 96.0 0.064 1.4E-06 51.8 10.9 104 203-327 24-136 (177)
304 PRK09354 recA recombinase A; P 96.0 0.021 4.5E-07 60.8 8.0 85 202-293 58-148 (349)
305 KOG2739 Leucine-rich acidic nu 96.0 0.0023 4.9E-08 63.3 0.8 82 621-706 41-127 (260)
306 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.086 1.9E-06 53.2 11.8 121 204-326 30-202 (254)
307 PRK12726 flagellar biosynthesi 96.0 0.069 1.5E-06 57.1 11.7 104 202-307 204-311 (407)
308 cd03230 ABC_DR_subfamily_A Thi 96.0 0.039 8.4E-07 53.5 9.2 119 203-327 25-159 (173)
309 PRK14974 cell division protein 96.0 0.062 1.3E-06 57.4 11.4 104 203-308 139-249 (336)
310 TIGR02238 recomb_DMC1 meiotic 96.0 0.019 4.1E-07 61.0 7.5 58 203-261 95-156 (313)
311 PRK13695 putative NTPase; Prov 95.9 0.0081 1.8E-07 58.4 4.4 22 206-227 2-23 (174)
312 cd01125 repA Hexameric Replica 95.9 0.068 1.5E-06 55.0 11.5 21 206-226 3-23 (239)
313 cd03246 ABCC_Protease_Secretio 95.9 0.04 8.6E-07 53.5 9.2 117 204-327 28-160 (173)
314 cd01122 GP4d_helicase GP4d_hel 95.8 0.1 2.3E-06 54.9 12.7 54 203-259 29-82 (271)
315 PRK12727 flagellar biosynthesi 95.8 0.037 8E-07 61.8 9.3 90 203-294 349-439 (559)
316 KOG0733 Nuclear AAA ATPase (VC 95.8 0.12 2.6E-06 57.5 12.6 133 203-355 544-694 (802)
317 PF10236 DAP3: Mitochondrial r 95.8 0.27 5.8E-06 52.4 15.3 49 334-383 258-306 (309)
318 PF03969 AFG1_ATPase: AFG1-lik 95.8 0.029 6.3E-07 60.8 8.0 107 202-323 60-167 (362)
319 cd03229 ABC_Class3 This class 95.8 0.041 8.9E-07 53.6 8.5 122 203-327 25-165 (178)
320 cd01124 KaiC KaiC is a circadi 95.7 0.064 1.4E-06 52.8 9.9 45 207-255 2-46 (187)
321 COG4618 ArpD ABC-type protease 95.7 0.094 2E-06 57.2 11.4 24 204-227 362-385 (580)
322 PRK13531 regulatory ATPase Rav 95.7 0.011 2.4E-07 65.2 4.7 43 177-227 20-62 (498)
323 PLN03187 meiotic recombination 95.7 0.034 7.5E-07 59.5 8.3 58 203-261 125-186 (344)
324 PRK08533 flagellar accessory p 95.7 0.075 1.6E-06 54.0 10.4 49 203-255 23-71 (230)
325 COG0468 RecA RecA/RadA recombi 95.7 0.037 8.1E-07 57.0 8.1 89 202-293 58-151 (279)
326 TIGR02239 recomb_RAD51 DNA rep 95.7 0.046 1E-06 58.3 9.1 57 203-260 95-155 (316)
327 PRK13539 cytochrome c biogenes 95.7 0.11 2.3E-06 52.2 11.3 25 203-227 27-51 (207)
328 KOG0924 mRNA splicing factor A 95.7 0.12 2.7E-06 57.8 12.2 132 203-339 370-529 (1042)
329 PRK05439 pantothenate kinase; 95.6 0.062 1.3E-06 56.6 9.6 42 184-227 68-109 (311)
330 PLN00020 ribulose bisphosphate 95.6 0.021 4.6E-07 60.2 6.1 26 202-227 146-171 (413)
331 PRK09270 nucleoside triphospha 95.6 0.052 1.1E-06 55.4 8.8 27 201-227 30-56 (229)
332 TIGR00554 panK_bact pantothena 95.5 0.054 1.2E-06 56.5 8.8 25 202-226 60-84 (290)
333 PRK00771 signal recognition pa 95.5 0.079 1.7E-06 58.9 10.5 57 203-261 94-151 (437)
334 KOG0727 26S proteasome regulat 95.5 0.8 1.7E-05 45.1 15.8 51 177-227 155-212 (408)
335 PRK10820 DNA-binding transcrip 95.5 0.068 1.5E-06 61.7 10.4 152 177-342 204-379 (520)
336 PRK07667 uridine kinase; Provi 95.5 0.018 4E-07 56.9 5.0 38 186-227 3-40 (193)
337 PRK04301 radA DNA repair and r 95.5 0.048 1E-06 58.7 8.6 56 203-259 101-160 (317)
338 PF05659 RPW8: Arabidopsis bro 95.5 0.19 4E-06 46.5 11.0 82 2-83 3-85 (147)
339 PRK13540 cytochrome c biogenes 95.4 0.15 3.2E-06 50.8 11.3 25 203-227 26-50 (200)
340 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.077 1.7E-06 54.4 9.4 50 203-256 20-69 (237)
341 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.035 7.5E-07 55.7 6.7 23 204-226 29-51 (213)
342 PTZ00035 Rad51 protein; Provis 95.4 0.059 1.3E-06 58.1 8.8 57 203-260 117-177 (337)
343 cd01133 F1-ATPase_beta F1 ATP 95.4 0.054 1.2E-06 55.6 8.0 88 203-292 68-172 (274)
344 PRK10733 hflB ATP-dependent me 95.4 0.13 2.8E-06 61.0 12.3 158 178-355 153-337 (644)
345 cd02025 PanK Pantothenate kina 95.4 0.051 1.1E-06 54.8 7.7 22 206-227 1-22 (220)
346 TIGR02858 spore_III_AA stage I 95.4 0.22 4.7E-06 51.7 12.4 128 185-327 97-233 (270)
347 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.02 4.3E-07 60.2 4.8 52 176-227 60-111 (358)
348 COG1102 Cmk Cytidylate kinase 95.3 0.04 8.6E-07 50.4 5.9 43 206-261 2-44 (179)
349 COG1618 Predicted nucleotide k 95.3 0.015 3.2E-07 53.1 3.1 25 204-228 5-29 (179)
350 TIGR00959 ffh signal recogniti 95.3 0.16 3.5E-06 56.2 11.9 25 203-227 98-122 (428)
351 PLN03186 DNA repair protein RA 95.3 0.067 1.4E-06 57.4 8.6 57 203-260 122-182 (342)
352 COG0396 sufC Cysteine desulfur 95.3 0.28 6E-06 48.1 11.7 27 203-229 29-55 (251)
353 KOG1532 GTPase XAB1, interacts 95.2 0.063 1.4E-06 53.3 7.5 29 201-229 16-44 (366)
354 cd03215 ABC_Carb_Monos_II This 95.2 0.19 4E-06 49.2 11.1 25 203-227 25-49 (182)
355 cd00267 ABC_ATPase ABC (ATP-bi 95.2 0.077 1.7E-06 50.5 8.2 119 204-328 25-145 (157)
356 PRK13538 cytochrome c biogenes 95.2 0.22 4.9E-06 49.7 11.8 25 203-227 26-50 (204)
357 COG1116 TauB ABC-type nitrate/ 95.2 0.13 2.9E-06 51.2 9.6 25 203-227 28-52 (248)
358 COG1126 GlnQ ABC-type polar am 95.2 0.2 4.4E-06 48.5 10.5 37 203-242 27-63 (240)
359 PRK00889 adenylylsulfate kinas 95.2 0.085 1.8E-06 51.3 8.4 25 203-227 3-27 (175)
360 PRK11388 DNA-binding transcrip 95.2 0.19 4.2E-06 60.1 13.1 131 177-322 325-466 (638)
361 PTZ00301 uridine kinase; Provi 95.2 0.029 6.4E-07 55.8 5.2 24 204-227 3-26 (210)
362 PF03308 ArgK: ArgK protein; 95.2 0.03 6.4E-07 56.1 5.1 60 185-248 14-73 (266)
363 cd03369 ABCC_NFT1 Domain 2 of 95.1 0.3 6.5E-06 49.0 12.6 25 203-227 33-57 (207)
364 PRK10867 signal recognition pa 95.1 0.23 4.9E-06 55.1 12.4 25 203-227 99-123 (433)
365 cd03217 ABC_FeS_Assembly ABC-t 95.1 0.15 3.1E-06 50.9 10.2 25 203-227 25-49 (200)
366 PF13238 AAA_18: AAA domain; P 95.1 0.015 3.2E-07 53.3 2.8 21 207-227 1-21 (129)
367 COG2274 SunT ABC-type bacterio 95.1 0.19 4.1E-06 59.5 12.5 25 203-227 498-522 (709)
368 KOG1051 Chaperone HSP104 and r 95.1 0.15 3.3E-06 60.6 11.5 122 178-310 563-687 (898)
369 cd03244 ABCC_MRP_domain2 Domai 95.1 0.26 5.5E-06 50.1 12.1 25 203-227 29-53 (221)
370 cd03233 ABC_PDR_domain1 The pl 95.1 0.23 5E-06 49.5 11.5 25 203-227 32-56 (202)
371 TIGR00150 HI0065_YjeE ATPase, 95.1 0.032 7E-07 50.4 4.7 41 184-228 6-46 (133)
372 cd03245 ABCC_bacteriocin_expor 95.1 0.22 4.8E-06 50.5 11.6 25 203-227 29-53 (220)
373 cd03263 ABC_subfamily_A The AB 95.1 0.17 3.7E-06 51.3 10.8 25 203-227 27-51 (220)
374 cd00984 DnaB_C DnaB helicase C 95.1 0.22 4.8E-06 51.4 11.7 51 203-256 12-62 (242)
375 cd02019 NK Nucleoside/nucleoti 95.1 0.017 3.6E-07 45.9 2.5 22 206-227 1-22 (69)
376 TIGR02236 recomb_radA DNA repa 95.0 0.083 1.8E-06 56.8 8.7 57 203-260 94-154 (310)
377 KOG0728 26S proteasome regulat 95.0 0.58 1.3E-05 45.9 13.1 155 178-353 147-331 (404)
378 cd03282 ABC_MSH4_euk MutS4 hom 95.0 0.076 1.6E-06 52.8 7.6 120 204-330 29-158 (204)
379 COG1066 Sms Predicted ATP-depe 95.0 0.045 9.8E-07 58.0 6.2 83 203-294 92-179 (456)
380 PF01583 APS_kinase: Adenylyls 95.0 0.026 5.7E-07 52.5 4.1 36 204-241 2-37 (156)
381 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.2E-07 34.7 0.9 17 625-642 2-18 (22)
382 PRK06547 hypothetical protein; 95.0 0.033 7.3E-07 53.5 4.9 26 202-227 13-38 (172)
383 COG4133 CcmA ABC-type transpor 95.0 0.38 8.3E-06 45.5 11.4 23 205-227 29-51 (209)
384 TIGR00708 cobA cob(I)alamin ad 95.0 0.18 3.9E-06 47.9 9.5 116 205-323 6-140 (173)
385 PRK10875 recD exonuclease V su 95.0 0.12 2.7E-06 60.1 10.3 118 204-324 167-303 (615)
386 COG0464 SpoVK ATPases of the A 94.9 0.29 6.2E-06 56.6 13.3 157 178-355 243-425 (494)
387 cd03226 ABC_cobalt_CbiO_domain 94.9 0.28 6.1E-06 49.1 11.7 25 203-227 25-49 (205)
388 PRK08233 hypothetical protein; 94.9 0.021 4.6E-07 56.0 3.5 24 204-227 3-26 (182)
389 PRK06731 flhF flagellar biosyn 94.9 0.2 4.4E-06 51.8 10.7 103 204-308 75-181 (270)
390 PRK05973 replicative DNA helic 94.9 0.1 2.2E-06 52.7 8.2 50 203-256 63-112 (237)
391 cd03232 ABC_PDR_domain2 The pl 94.9 0.24 5.1E-06 49.0 10.9 25 203-227 32-56 (192)
392 PF00485 PRK: Phosphoribulokin 94.9 0.019 4E-07 57.0 3.0 22 206-227 1-22 (194)
393 COG5635 Predicted NTPase (NACH 94.9 0.049 1.1E-06 66.7 7.2 198 203-405 221-446 (824)
394 COG1703 ArgK Putative periplas 94.9 0.033 7.2E-07 56.5 4.6 62 187-252 38-99 (323)
395 TIGR00235 udk uridine kinase. 94.9 0.022 4.9E-07 57.1 3.5 26 202-227 4-29 (207)
396 PF13671 AAA_33: AAA domain; P 94.9 0.022 4.7E-07 53.3 3.2 22 206-227 1-22 (143)
397 cd03251 ABCC_MsbA MsbA is an e 94.9 0.41 8.8E-06 49.1 12.9 25 203-227 27-51 (234)
398 cd03213 ABCG_EPDR ABCG transpo 94.8 0.35 7.6E-06 47.8 11.9 25 203-227 34-58 (194)
399 TIGR03522 GldA_ABC_ATP gliding 94.8 0.27 5.9E-06 52.5 11.9 25 203-227 27-51 (301)
400 KOG2170 ATPase of the AAA+ sup 94.8 0.11 2.3E-06 52.8 7.9 118 178-308 83-203 (344)
401 COG0465 HflB ATP-dependent Zn 94.8 0.37 7.9E-06 55.0 13.1 183 174-381 147-356 (596)
402 PRK05480 uridine/cytidine kina 94.8 0.025 5.5E-07 56.9 3.7 25 203-227 5-29 (209)
403 TIGR00064 ftsY signal recognit 94.8 0.15 3.2E-06 53.2 9.4 90 203-294 71-165 (272)
404 COG0563 Adk Adenylate kinase a 94.8 0.046 1E-06 52.8 5.2 22 206-227 2-23 (178)
405 cd03264 ABC_drug_resistance_li 94.8 0.27 5.8E-06 49.5 11.1 22 206-227 27-48 (211)
406 KOG0739 AAA+-type ATPase [Post 94.8 0.71 1.5E-05 46.8 13.3 96 177-293 133-235 (439)
407 COG1419 FlhF Flagellar GTP-bin 94.8 0.25 5.5E-06 53.0 11.1 105 203-310 202-310 (407)
408 COG1428 Deoxynucleoside kinase 94.8 0.02 4.4E-07 55.1 2.6 24 204-227 4-27 (216)
409 KOG2383 Predicted ATPase [Gene 94.7 0.042 9.1E-07 57.9 5.0 115 203-325 113-235 (467)
410 PRK06002 fliI flagellum-specif 94.7 0.14 2.9E-06 56.6 9.2 87 203-292 164-263 (450)
411 cd03254 ABCC_Glucan_exporter_l 94.7 0.37 7.9E-06 49.3 12.1 25 203-227 28-52 (229)
412 CHL00206 ycf2 Ycf2; Provisiona 94.7 0.53 1.2E-05 60.2 15.0 25 203-227 1629-1653(2281)
413 PF07724 AAA_2: AAA domain (Cd 94.7 0.02 4.3E-07 55.0 2.5 91 204-309 3-105 (171)
414 PRK06762 hypothetical protein; 94.7 0.026 5.6E-07 54.4 3.3 24 204-227 2-25 (166)
415 PRK15177 Vi polysaccharide exp 94.7 0.32 7E-06 48.9 11.3 25 203-227 12-36 (213)
416 PRK10923 glnG nitrogen regulat 94.7 0.16 3.4E-06 58.5 10.3 132 177-322 138-282 (469)
417 cd02027 APSK Adenosine 5'-phos 94.7 0.22 4.9E-06 46.7 9.5 22 206-227 1-22 (149)
418 PF00910 RNA_helicase: RNA hel 94.7 0.018 3.9E-07 50.6 1.9 21 207-227 1-21 (107)
419 TIGR03878 thermo_KaiC_2 KaiC d 94.6 0.14 3E-06 53.3 8.7 40 203-244 35-74 (259)
420 COG4181 Predicted ABC-type tra 94.6 0.89 1.9E-05 42.3 12.4 126 205-330 37-214 (228)
421 KOG0729 26S proteasome regulat 94.6 0.23 5E-06 49.1 9.3 52 176-227 176-234 (435)
422 TIGR02329 propionate_PrpR prop 94.6 0.12 2.6E-06 59.2 8.8 132 177-322 212-357 (526)
423 TIGR01818 ntrC nitrogen regula 94.6 0.2 4.4E-06 57.5 10.9 135 177-323 134-279 (463)
424 cd03237 ABC_RNaseL_inhibitor_d 94.6 0.31 6.7E-06 50.2 11.1 25 203-227 24-48 (246)
425 COG0467 RAD55 RecA-superfamily 94.5 0.065 1.4E-06 56.0 6.1 52 202-257 21-72 (260)
426 PRK03846 adenylylsulfate kinas 94.5 0.22 4.7E-06 49.5 9.6 26 202-227 22-47 (198)
427 TIGR00390 hslU ATP-dependent p 94.5 0.088 1.9E-06 57.1 7.0 81 177-259 12-104 (441)
428 COG2842 Uncharacterized ATPase 94.5 0.42 9.2E-06 48.9 11.4 126 175-313 70-195 (297)
429 PRK15424 propionate catabolism 94.5 0.12 2.5E-06 59.3 8.4 47 177-227 219-265 (538)
430 PF12775 AAA_7: P-loop contain 94.5 0.025 5.5E-07 58.9 2.9 34 187-227 23-56 (272)
431 PRK13543 cytochrome c biogenes 94.5 0.49 1.1E-05 47.7 12.1 25 203-227 36-60 (214)
432 COG1120 FepC ABC-type cobalami 94.5 0.52 1.1E-05 48.0 12.0 25 203-227 27-51 (258)
433 cd03253 ABCC_ATM1_transporter 94.5 0.46 9.9E-06 48.8 12.2 25 203-227 26-50 (236)
434 cd03231 ABC_CcmA_heme_exporter 94.5 0.35 7.6E-06 48.2 10.9 25 203-227 25-49 (201)
435 cd01121 Sms Sms (bacterial rad 94.4 0.12 2.7E-06 56.2 8.1 83 203-293 81-168 (372)
436 PTZ00088 adenylate kinase 1; P 94.4 0.032 7E-07 56.3 3.4 22 206-227 8-29 (229)
437 cd03283 ABC_MutS-like MutS-lik 94.4 0.22 4.8E-06 49.3 9.3 22 205-226 26-47 (199)
438 TIGR01420 pilT_fam pilus retra 94.4 0.098 2.1E-06 56.9 7.4 112 204-326 122-233 (343)
439 PRK09544 znuC high-affinity zi 94.4 0.39 8.4E-06 49.7 11.5 25 203-227 29-53 (251)
440 PRK14721 flhF flagellar biosyn 94.4 0.17 3.6E-06 55.8 9.0 90 203-294 190-280 (420)
441 PRK03839 putative kinase; Prov 94.4 0.03 6.4E-07 54.8 3.0 22 206-227 2-23 (180)
442 PF00154 RecA: recA bacterial 94.4 0.055 1.2E-06 57.0 5.1 85 202-293 51-141 (322)
443 TIGR03740 galliderm_ABC gallid 94.3 0.39 8.4E-06 48.8 11.2 24 204-227 26-49 (223)
444 TIGR03881 KaiC_arch_4 KaiC dom 94.3 0.15 3.3E-06 52.1 8.2 47 203-253 19-65 (229)
445 PRK14723 flhF flagellar biosyn 94.3 0.24 5.2E-06 58.5 10.5 88 204-293 185-273 (767)
446 cd03252 ABCC_Hemolysin The ABC 94.3 0.73 1.6E-05 47.4 13.3 25 203-227 27-51 (237)
447 PF00006 ATP-synt_ab: ATP synt 94.3 0.11 2.3E-06 51.8 6.7 86 203-292 14-114 (215)
448 PRK04040 adenylate kinase; Pro 94.3 0.035 7.5E-07 54.4 3.2 24 204-227 2-25 (188)
449 KOG0743 AAA+-type ATPase [Post 94.3 0.7 1.5E-05 50.1 13.0 151 205-390 236-413 (457)
450 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.3 0.48 1E-05 48.7 11.9 25 203-227 28-52 (238)
451 PF00560 LRR_1: Leucine Rich R 94.3 0.017 3.7E-07 33.7 0.6 21 648-669 1-21 (22)
452 PRK04328 hypothetical protein; 94.3 0.13 2.9E-06 53.1 7.6 47 203-253 22-68 (249)
453 TIGR01360 aden_kin_iso1 adenyl 94.3 0.037 7.9E-07 54.7 3.3 25 203-227 2-26 (188)
454 PF01078 Mg_chelatase: Magnesi 94.2 0.071 1.5E-06 52.0 5.1 42 177-226 3-44 (206)
455 PF08433 KTI12: Chromatin asso 94.2 0.11 2.3E-06 54.0 6.7 23 205-227 2-24 (270)
456 KOG0738 AAA+-type ATPase [Post 94.2 0.53 1.1E-05 49.7 11.5 50 178-227 213-268 (491)
457 PF13306 LRR_5: Leucine rich r 94.2 0.13 2.8E-06 47.0 6.7 104 560-680 6-112 (129)
458 PHA00729 NTP-binding motif con 94.2 0.059 1.3E-06 53.5 4.6 25 203-227 16-40 (226)
459 TIGR01447 recD exodeoxyribonuc 94.2 0.2 4.3E-06 58.3 9.5 116 204-322 160-295 (586)
460 cd03250 ABCC_MRP_domain1 Domai 94.2 1 2.2E-05 45.0 13.6 25 203-227 30-54 (204)
461 COG0572 Udk Uridine kinase [Nu 94.2 0.041 8.8E-07 53.9 3.3 26 202-227 6-31 (218)
462 PRK13765 ATP-dependent proteas 94.2 0.078 1.7E-06 61.8 6.2 76 175-260 29-104 (637)
463 PRK15453 phosphoribulokinase; 94.2 0.25 5.3E-06 50.8 8.9 77 203-281 4-88 (290)
464 PF07726 AAA_3: ATPase family 94.1 0.02 4.4E-07 50.7 1.0 27 207-235 2-28 (131)
465 TIGR02655 circ_KaiC circadian 94.1 0.27 5.9E-06 56.3 10.5 50 202-255 261-310 (484)
466 COG3840 ThiQ ABC-type thiamine 94.1 0.83 1.8E-05 43.0 11.4 36 203-241 24-59 (231)
467 TIGR03498 FliI_clade3 flagella 94.1 0.18 4E-06 55.5 8.7 87 203-292 139-239 (418)
468 PF03193 DUF258: Protein of un 94.1 0.077 1.7E-06 49.7 4.9 35 184-227 24-58 (161)
469 PF13481 AAA_25: AAA domain; P 94.1 0.22 4.9E-06 49.3 8.7 49 205-255 33-89 (193)
470 PRK05201 hslU ATP-dependent pr 94.1 0.12 2.6E-06 56.1 6.9 82 176-259 14-107 (443)
471 KOG0736 Peroxisome assembly fa 94.1 0.77 1.7E-05 52.9 13.3 146 207-376 708-875 (953)
472 COG4088 Predicted nucleotide k 94.1 0.094 2E-06 50.0 5.4 23 205-227 2-24 (261)
473 PRK00625 shikimate kinase; Pro 94.1 0.036 7.8E-07 53.3 2.8 22 206-227 2-23 (173)
474 PRK06995 flhF flagellar biosyn 94.1 0.27 5.9E-06 55.1 9.9 90 203-294 255-345 (484)
475 TIGR03575 selen_PSTK_euk L-ser 94.1 0.69 1.5E-05 49.5 12.5 21 207-227 2-22 (340)
476 PF06745 KaiC: KaiC; InterPro 94.0 0.071 1.5E-06 54.4 5.1 50 203-255 18-67 (226)
477 cd01129 PulE-GspE PulE/GspE Th 94.0 0.19 4.1E-06 52.3 8.1 82 204-295 80-161 (264)
478 COG1122 CbiO ABC-type cobalt t 94.0 0.41 8.8E-06 48.5 10.2 24 203-226 29-52 (235)
479 PF06309 Torsin: Torsin; Inte 94.0 0.1 2.3E-06 46.2 5.1 47 178-227 26-76 (127)
480 PRK09580 sufC cysteine desulfu 94.0 0.61 1.3E-05 48.3 12.0 25 203-227 26-50 (248)
481 TIGR03574 selen_PSTK L-seryl-t 93.9 0.26 5.6E-06 51.1 9.1 21 207-227 2-22 (249)
482 PRK11823 DNA repair protein Ra 93.9 0.22 4.7E-06 56.1 9.0 40 203-244 79-118 (446)
483 COG0714 MoxR-like ATPases [Gen 93.9 0.11 2.4E-06 56.4 6.4 63 178-253 25-87 (329)
484 cd03300 ABC_PotA_N PotA is an 93.9 0.34 7.3E-06 49.6 9.8 25 203-227 25-49 (232)
485 TIGR02868 CydC thiol reductant 93.9 0.54 1.2E-05 55.0 12.7 25 203-227 360-384 (529)
486 PRK00279 adk adenylate kinase; 93.9 0.35 7.6E-06 48.8 9.7 22 206-227 2-23 (215)
487 PRK05917 DNA polymerase III su 93.9 0.8 1.7E-05 47.7 12.3 131 185-340 5-154 (290)
488 PRK09519 recA DNA recombinatio 93.9 0.14 3.1E-06 60.4 7.6 84 203-293 59-148 (790)
489 PF13245 AAA_19: Part of AAA d 93.8 0.084 1.8E-06 42.7 4.0 22 204-225 10-31 (76)
490 PRK10463 hydrogenase nickel in 93.8 0.21 4.6E-06 51.7 7.9 87 202-294 102-195 (290)
491 cd01135 V_A-ATPase_B V/A-type 93.8 0.26 5.7E-06 50.5 8.5 90 203-292 68-175 (276)
492 COG2019 AdkA Archaeal adenylat 93.8 0.058 1.3E-06 49.6 3.3 24 204-227 4-27 (189)
493 TIGR03411 urea_trans_UrtD urea 93.8 0.83 1.8E-05 47.1 12.5 24 204-227 28-51 (242)
494 KOG0735 AAA+-type ATPase [Post 93.8 3.4 7.3E-05 47.5 17.3 178 178-380 668-870 (952)
495 PRK00131 aroK shikimate kinase 93.7 0.05 1.1E-06 52.9 3.2 24 204-227 4-27 (175)
496 TIGR03880 KaiC_arch_3 KaiC dom 93.7 0.33 7.2E-06 49.4 9.3 49 203-255 15-63 (224)
497 cd03287 ABC_MSH3_euk MutS3 hom 93.7 0.4 8.7E-06 48.2 9.6 24 203-226 30-53 (222)
498 TIGR01193 bacteriocin_ABC ABC- 93.7 0.4 8.6E-06 58.4 11.4 25 203-227 499-523 (708)
499 cd03240 ABC_Rad50 The catalyti 93.7 0.48 1E-05 47.2 10.1 52 276-327 132-187 (204)
500 COG3640 CooC CO dehydrogenase 93.7 0.2 4.3E-06 49.1 6.9 41 206-247 2-42 (255)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-84 Score=759.78 Aligned_cols=659 Identities=27% Similarity=0.433 Sum_probs=529.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHhhhhhhhHH
Q 048084 2 VDAIISPLLDQLISVAVEEAKEQVRLVTGVGKEVKKLTSTLRAIQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLG 81 (967)
Q Consensus 2 a~~~vs~v~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~~~~ed~ld 81 (967)
|++.++..+.|+.+ .+.++.....+.++.+..|++.|..+++++.|++.++.....+..|.+.+++++|++||+++
T Consensus 1 ~~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred CCeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777877 67788889999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCcccccccccccCCCccccCCCcchhhHHHHHHHHHHHHHHHHHHhhhcccCceeeccccc
Q 048084 82 EWNTARLKLQIDGVDDHQNDTLVPRKKVCSFFPTASCFGCKPIVLRRDIALKIKEINETLDDISKQKDMFGFAVHVIKSN 161 (967)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~ 161 (967)
.|.++....+..+. ...+....+. .|+| .+++..+..+..+..++-.+.+..+.++.........
T Consensus 77 ~~~v~~~~~~~~~~-------l~~~~~~~~~----~c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~ 141 (889)
T KOG4658|consen 77 LFLVEEIERKANDL-------LSTRSVERQR----LCLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVG 141 (889)
T ss_pred HHHHHHHHHHHhHH-------hhhhHHHHHH----Hhhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccc
Confidence 99998877543221 0000001111 1222 4455566666666666666666666555333221111
Q ss_pred --ccccCCCCCCCCCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcc-ccccCCceE
Q 048084 162 --ERVDERVPSISSIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGD-VKKYFDERI 238 (967)
Q Consensus 162 --~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~ 238 (967)
..+...+...+...... ||.++.++++.+.|...+ ..+++|+||||+||||||++++++.. ++.+|+.++
T Consensus 142 ~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~i 214 (889)
T KOG4658|consen 142 ESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVI 214 (889)
T ss_pred ccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEE
Confidence 11112233334444444 999999999999997543 38999999999999999999999987 999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHhccCCCCCC--ChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEE
Q 048084 239 WVCVSDPFDEFRIAKAIIEALTDSASNFG--EFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKI 316 (967)
Q Consensus 239 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~i 316 (967)
||.||+.++...+.++|++.++....... ..++++..+.+.|+++||+||+||||+. .+|+.+..++|....|++|
T Consensus 215 WV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~Kv 292 (889)
T KOG4658|consen 215 WVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKV 292 (889)
T ss_pred EEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEE
Confidence 99999999999999999999987544332 2368889999999999999999999998 6799999999998899999
Q ss_pred EEecCChhHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCCC
Q 048084 317 LITTRKEAIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSKNT 395 (967)
Q Consensus 317 liTtr~~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~ 395 (967)
++|||+.+|+.. ++....++++.|+++|||++|.+.++..... ..+.++++|++++++|+|+|||+.++|+.|+.+.+
T Consensus 293 vlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t 371 (889)
T KOG4658|consen 293 VLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT 371 (889)
T ss_pred EEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc
Confidence 999999999998 7778899999999999999999999876442 33448999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhh----hhhhcccchhHHHHhHhcCChhhHHHHhhhccCCCCcccCHHHHHHHHHhcCCccccc-ccc
Q 048084 396 RKEWQNILESEIWE----LEAVKKGLLAPLLLSYNELPSKVKHCFSYCAVFPKDYEMWKDKLIELWMAQGFLNNKR-NKE 470 (967)
Q Consensus 396 ~~~w~~~l~~~~~~----~~~~~~~~~~~l~~sy~~L~~~~k~~~~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~-~~~ 470 (967)
..+|+++....... .++....++.++.+||+.||+++|.||+|||+||+|+.|+++.|+.+|+||||+.... +..
T Consensus 372 ~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~ 451 (889)
T KOG4658|consen 372 VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGET 451 (889)
T ss_pred HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccc
Confidence 99999998865444 2334577999999999999999999999999999999999999999999999998844 678
Q ss_pred HHHHHHHHHHHHHhCCCccccCCCCCCCeeeEEecchHHHHHHHhhc-----cccEEEecC-CcccccccccCcccEEEE
Q 048084 471 MAEIGEEYFNVLASRSFFQDFGRGYDGEIYDCKMHDIVHDFAQYLCS-----NECLTVEIH-SGEELAMSSFGEKKILHL 544 (967)
Q Consensus 471 ~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hd~i~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~l 544 (967)
+++.|.+|+.+|++++|++..... ++..+|+|||+||++|.++++ .++.+...+ +..+.|-...+ ..+|++
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~-~~~rr~ 528 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW-NSVRRM 528 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch-hheeEE
Confidence 999999999999999999876543 556789999999999999999 555444433 33444444444 588999
Q ss_pred EEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCC
Q 048084 545 MLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLH 624 (967)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~ 624 (967)
++.++.+..++. -..++.|++|.+..|.. +...+...+|..++.|++|||+ +| ..+.++|+.|++|.+
T Consensus 529 s~~~~~~~~~~~-----~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs-----~~-~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 529 SLMNNKIEHIAG-----SSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLS-----GN-SSLSKLPSSIGELVH 596 (889)
T ss_pred EEeccchhhccC-----CCCCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECC-----CC-CccCcCChHHhhhhh
Confidence 999999887763 24677899999999963 3445567779999999999999 53 567899999999999
Q ss_pred CcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceE
Q 048084 625 LKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFV 704 (967)
Q Consensus 625 L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~ 704 (967)
||||+|+++. +..+|..+.+|++|.+|++..+..+..+|.....|++|++|.+.... ...-...++.+.+|++|..+.
T Consensus 597 LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 597 LRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhhe
Confidence 9999999999 99999999999999999999998777777777779999999997652 111112244455555555554
Q ss_pred ec
Q 048084 705 VG 706 (967)
Q Consensus 705 ~~ 706 (967)
+.
T Consensus 675 ~~ 676 (889)
T KOG4658|consen 675 IT 676 (889)
T ss_pred ee
Confidence 43
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.9e-62 Score=604.99 Aligned_cols=687 Identities=21% Similarity=0.269 Sum_probs=438.1
Q ss_pred CCCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEe---cCCC--
Q 048084 172 SSIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCV---SDPF-- 246 (967)
Q Consensus 172 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~-- 246 (967)
++.+...+|||+++++++..+|.... +..++|+|+||||+||||||+.+|+. +...|++.+|+.. ....
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~ 252 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEI 252 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhh
Confidence 44456679999999999998885432 36899999999999999999999985 6788998888752 1100
Q ss_pred ---------C-HHHHHHHHHHHhccCCC-CCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcE
Q 048084 247 ---------D-EFRIAKAIIEALTDSAS-NFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSK 315 (967)
Q Consensus 247 ---------~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ 315 (967)
. ...+.++++.++..... .... ...+++.+.++|+||||||||+. ..|+.+.......++|++
T Consensus 253 ~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~Gsr 326 (1153)
T PLN03210 253 YSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSR 326 (1153)
T ss_pred cccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcE
Confidence 0 12334444444432211 1111 24567778999999999999875 678887776666678999
Q ss_pred EEEecCChhHHhhhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCCC
Q 048084 316 ILITTRKEAIARIMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSKNT 395 (967)
Q Consensus 316 iliTtr~~~v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~ 395 (967)
||||||++.++..++...+|+++.++.++||++|.++||+... +++++.+++++|+++|+|+||||+++|++|+++ +
T Consensus 327 IIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~ 403 (1153)
T PLN03210 327 IIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-D 403 (1153)
T ss_pred EEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-C
Confidence 9999999999987777789999999999999999999997643 345688899999999999999999999999876 7
Q ss_pred HHHHHHHHhhhhhhhhhhcccchhHHHHhHhcCCh-hhHHHHhhhccCCCCcccCHHHHHHHHHhcCCccccccccHHHH
Q 048084 396 RKEWQNILESEIWELEAVKKGLLAPLLLSYNELPS-KVKHCFSYCAVFPKDYEMWKDKLIELWMAQGFLNNKRNKEMAEI 474 (967)
Q Consensus 396 ~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~~~~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 474 (967)
..+|..+++..... .+..+..+|++||+.|++ ..|.||+++|.|+.+..++ .+..|.+.+....
T Consensus 404 ~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~--------- 468 (1153)
T PLN03210 404 KEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV--------- 468 (1153)
T ss_pred HHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------
Confidence 89999998875432 235699999999999987 5999999999999887553 3667777665432
Q ss_pred HHHHHHHHHhCCCccccCCCCCCCeeeEEecchHHHHHHHhhcccc-------EEEecCCcccccccccCcccEEEEEEE
Q 048084 475 GEEYFNVLASRSFFQDFGRGYDGEIYDCKMHDIVHDFAQYLCSNEC-------LTVEIHSGEELAMSSFGEKKILHLMLA 547 (967)
Q Consensus 475 ~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hd~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (967)
+.-++.|++++|++... ..++|||++|++++.++.++. +.+.............+...++.+++.
T Consensus 469 -~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~ 540 (1153)
T PLN03210 469 -NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLD 540 (1153)
T ss_pred -hhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEec
Confidence 22388999999997632 148999999999999986652 222211111111122233567777776
Q ss_pred ecCCCCCCCcccccccCCCCccEEEeccCCcc---chhccchhhhccCC-cceEEEecccCcccccccccccccccccCC
Q 048084 548 LDRGALIPMPIWDNVKGLRGLRSLLVESNEYS---WSRVILPQLFDKLI-CLRALKLEVRGWRSCENYIKEIPTNIEKLL 623 (967)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~---~~~~~~~~~~~~l~-~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~ 623 (967)
.+.+..+... ...|.++++|+.|.+..+... .....+|..|..++ .|+.|++. + +.+..+|..+ .+.
T Consensus 541 ~~~~~~~~i~-~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~-----~--~~l~~lP~~f-~~~ 611 (1153)
T PLN03210 541 IDEIDELHIH-ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD-----K--YPLRCMPSNF-RPE 611 (1153)
T ss_pred cCccceeeec-HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec-----C--CCCCCCCCcC-Ccc
Confidence 5555433211 146778888888877654210 01111333343332 35555555 3 3344444443 234
Q ss_pred CCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCce
Q 048084 624 HLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKF 703 (967)
Q Consensus 624 ~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~ 703 (967)
+|++|+|++|. +..+|..+..+++|++|+|++|..++.+| .+..+++|++|++++|..+..+|..++++++|+.|++.
T Consensus 612 ~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 45555555444 44444444444455555554444444444 24444445555554444444444444444444444443
Q ss_pred EecCcCCCccCccccccCCCCCCeEEcCcCCCCChh----------------hhHHhhccCCCCCCcEEEEeecCCCCCc
Q 048084 704 VVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAG----------------EARRAELEKKKNLFKLGLHFCHSRDGDE 767 (967)
Q Consensus 704 ~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~----------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 767 (967)
.+..-...+. -.+++.|+.|.+.++....... ...+.. ..+++|++|.+..+.......
T Consensus 690 ~c~~L~~Lp~----~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~-~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 690 RCENLEILPT----GINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN-LRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCcCccCC----cCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccc-ccccccccccccccchhhccc
Confidence 3221110000 0123333333333322111100 000011 123444444444331100000
Q ss_pred ccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceee
Q 048084 768 EQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKI 847 (967)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L 847 (967)
......+.....+++|+.|+|++|.... .+ |..+.++++|+.|+|++|..++.+|....+++|+.|++
T Consensus 765 ----------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~L 832 (1153)
T PLN03210 765 ----------RVQPLTPLMTMLSPSLTRLFLSDIPSLV-EL-PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDL 832 (1153)
T ss_pred ----------cccccchhhhhccccchheeCCCCCCcc-cc-ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEEC
Confidence 0000000112235688888888876544 14 77788889999999988887777887557888999999
Q ss_pred ccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCC
Q 048084 848 QGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLL 927 (967)
Q Consensus 848 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 927 (967)
++|..+..++. ..++|+.|+|+++ .++.++. .+..+++|+.|++.+|+.++.+|..+.
T Consensus 833 s~c~~L~~~p~---------------~~~nL~~L~Ls~n-~i~~iP~------si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 833 SGCSRLRTFPD---------------ISTNISDLNLSRT-GIEEVPW------WIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred CCCCccccccc---------------cccccCEeECCCC-CCccChH------HHhcCCCCCEEECCCCCCcCccCcccc
Confidence 98887655432 2356777777775 4554442 566788999999999999999988888
Q ss_pred CCCCcCeEEEcCCcchhhh
Q 048084 928 QKTTLQELWISGCPILKER 946 (967)
Q Consensus 928 ~l~~L~~L~l~~c~~l~~~ 946 (967)
.+++|+.+++++|+.|.+.
T Consensus 891 ~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 891 KLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cccCCCeeecCCCcccccc
Confidence 8899999999999887643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.8e-42 Score=366.06 Aligned_cols=278 Identities=38% Similarity=0.631 Sum_probs=224.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhcc
Q 048084 182 REDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTD 261 (967)
Q Consensus 182 R~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 261 (967)
||.++++|.+.|.... .+.++|+|+|+||+||||||++++++...+.+|+.++|+.++...+...++..++.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998643 478999999999999999999999987788999999999999998999999999999987
Q ss_pred CCC---CCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHHhhhCC-cceeec
Q 048084 262 SAS---NFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIARIMGS-IDIISI 337 (967)
Q Consensus 262 ~~~---~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~~~-~~~~~l 337 (967)
... ...+.++....+.+.+.++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 4467788999999999999999999999876 5888888888877789999999999988876654 678999
Q ss_pred CCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCCCHHHHHHHHhhhhhhhh---hhc
Q 048084 338 NVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSKNTRKEWQNILESEIWELE---AVK 414 (967)
Q Consensus 338 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~~~~~~~---~~~ 414 (967)
++|+.++|++||.+.++... ....+...+.+++|+++|+|+||||+++|++|+.+.+..+|..+++....... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 12234456679999999999999999999999766577889988876544442 234
Q ss_pred ccchhHHHHhHhcCChhhHHHHhhhccCCCCcccCHHHHHHHHHhcCCcccc
Q 048084 415 KGLLAPLLLSYNELPSKVKHCFSYCAVFPKDYEMWKDKLIELWMAQGFLNNK 466 (967)
Q Consensus 415 ~~~~~~l~~sy~~L~~~~k~~~~~~~~fp~~~~i~~~~li~~w~a~g~~~~~ 466 (967)
..+..++.+||+.||++.|.||+|||+||+++.|+++.|+++|+++|+++..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6789999999999999999999999999999999999999999999999864
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=9.9e-28 Score=252.32 Aligned_cols=343 Identities=21% Similarity=0.215 Sum_probs=268.1
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++.+.+.......+| +.+..+.+|.+|.+.+|++. . +...+..++.||.+++..|++ .-..+|..
T Consensus 32 t~~~WLkLnrt~L~~vP----eEL~~lqkLEHLs~~HN~L~---~-vhGELs~Lp~LRsv~~R~N~L-----KnsGiP~d 98 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVP----EELSRLQKLEHLSMAHNQLI---S-VHGELSDLPRLRSVIVRDNNL-----KNSGIPTD 98 (1255)
T ss_pred hheeEEEechhhhhhCh----HHHHHHhhhhhhhhhhhhhH---h-hhhhhccchhhHHHhhhcccc-----ccCCCCch
Confidence 46778888888888877 67888999999999998842 2 334478889999999983222 22457888
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCcc-ccccccccEEecCCCccccccccCCCCCCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRTESLRYLPVGIEELIRL 697 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 697 (967)
+.+|..|..||||+|+ +++.|..+...+++-.|+|++|+ +..+|.. +-+|+.|-+|+|+.| .+..+|+.+..|..|
T Consensus 99 iF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSML 175 (1255)
T ss_pred hcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhh
Confidence 9999999999999999 99999989999999999999988 8888865 568899999999988 888999999999999
Q ss_pred CcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCch
Q 048084 698 RGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEE 777 (967)
Q Consensus 698 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 777 (967)
++|.++.+... ...+..|++++.|..|.+++- .......+.++..+.+|..++++.|+
T Consensus 176 qtL~Ls~NPL~---hfQLrQLPsmtsL~vLhms~T---qRTl~N~Ptsld~l~NL~dvDlS~N~---------------- 233 (1255)
T KOG0444|consen 176 QTLKLSNNPLN---HFQLRQLPSMTSLSVLHMSNT---QRTLDNIPTSLDDLHNLRDVDLSENN---------------- 233 (1255)
T ss_pred hhhhcCCChhh---HHHHhcCccchhhhhhhcccc---cchhhcCCCchhhhhhhhhccccccC----------------
Confidence 99988877654 345566666666666666553 23334456677888999999999994
Q ss_pred hhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeeccccCceEe
Q 048084 778 DEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGMQSVKRV 856 (967)
Q Consensus 778 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c~~l~~~ 856 (967)
...+|+.+..+++|+.|+|++|.+.+ + ....+...+|+.|+||.|+ ++.+|. ++.|+.|+.|.+.++. +.
T Consensus 234 --Lp~vPecly~l~~LrrLNLS~N~ite--L-~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~Nk-L~-- 304 (1255)
T KOG0444|consen 234 --LPIVPECLYKLRNLRRLNLSGNKITE--L-NMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNK-LT-- 304 (1255)
T ss_pred --CCcchHHHhhhhhhheeccCcCceee--e-eccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCc-cc--
Confidence 34578888899999999999999987 5 4445567899999999995 455666 9999999999987632 22
Q ss_pred CccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEE
Q 048084 857 GNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELW 936 (967)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 936 (967)
+.++++ .++.+.+|+.+...++ .|+-. |..+..|+.|+.|.+..| .+-++|+.+.-++.|..|+
T Consensus 305 ---FeGiPS-----GIGKL~~Levf~aanN-~LElV------PEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 305 ---FEGIPS-----GIGKLIQLEVFHAANN-KLELV------PEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLD 368 (1255)
T ss_pred ---ccCCcc-----chhhhhhhHHHHhhcc-ccccC------chhhhhhHHHHHhccccc-ceeechhhhhhcCCcceee
Confidence 223221 2457788888888876 45533 336778999999999988 6777999999999999999
Q ss_pred EcCCcchh
Q 048084 937 ISGCPILK 944 (967)
Q Consensus 937 l~~c~~l~ 944 (967)
+..||+|.
T Consensus 369 lreNpnLV 376 (1255)
T KOG0444|consen 369 LRENPNLV 376 (1255)
T ss_pred ccCCcCcc
Confidence 99999875
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.3e-24 Score=272.75 Aligned_cols=298 Identities=19% Similarity=0.183 Sum_probs=174.0
Q ss_pred ccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCC
Q 048084 614 EIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEE 693 (967)
Q Consensus 614 ~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~ 693 (967)
.+|..++++++|++|+|++|.....+|..+.++++|++|+|++|.....+|..++++++|++|++++|.....+|..++.
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 44555666666666666666633355666666666666666666644556666666666666666666444456666666
Q ss_pred CCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCC
Q 048084 694 LIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRR 773 (967)
Q Consensus 694 l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 773 (967)
+++|+.|++..+......+. .+.++++|+.|.+.+... ....+..+..+++|++|++++|.+..
T Consensus 235 l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~~--------- 298 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPS---SLGNLKNLQYLFLYQNKL----SGPIPPSIFSLQKLISLDLSDNSLSG--------- 298 (968)
T ss_pred CCCCCEEECcCceeccccCh---hHhCCCCCCEEECcCCee----eccCchhHhhccCcCEEECcCCeecc---------
Confidence 66666666655543321122 233344444444433211 11123344556666667666663221
Q ss_pred CCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeeccccC
Q 048084 774 ENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGMQS 852 (967)
Q Consensus 774 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c~~ 852 (967)
..+..+..+++|+.|++++|.... ..|.++..+++|+.|++++|.+...+|. ++.+++|+.|++++|..
T Consensus 299 --------~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 299 --------EIPELVIQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred --------CCChhHcCCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 234455667777888887777654 3366777777888888877766656665 66777788887776543
Q ss_pred ceEeCccccCCCC------------CCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCc
Q 048084 853 VKRVGNEFLGVES------------DTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLK 920 (967)
Q Consensus 853 l~~~~~~~~~~~~------------~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 920 (967)
...++..+..... ......+..+++|+.|++++|. +++..|..+..+++|+.|++++|....
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS------FSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE------eeeECChhHhcCCCCCEEECcCCcccC
Confidence 2222222111000 0001123345666666666653 223344466678889999999886555
Q ss_pred CCCcCCCCCCCcCeEEEcCCcch
Q 048084 921 ALPDHLLQKTTLQELWISGCPIL 943 (967)
Q Consensus 921 ~lp~~~~~l~~L~~L~l~~c~~l 943 (967)
.+|..+..+++|+.|++++|...
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ccChhhccCCCCcEEECcCceee
Confidence 66766777899999999988653
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1.6e-24 Score=272.06 Aligned_cols=360 Identities=19% Similarity=0.162 Sum_probs=203.1
Q ss_pred ccEEEEEEEecCCCC-CCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccc-cccc
Q 048084 539 KKILHLMLALDRGAL-IPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYI-KEIP 616 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~-~~lp 616 (967)
..++++.+.++.+.. +| ...+++|++|++++|. +....|..+..+++|++|+|+ + |.+ ..+|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p------~~~l~~L~~L~Ls~n~---~~~~~p~~~~~l~~L~~L~L~-----~--n~l~~~~p 181 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIP------RGSIPNLETLDLSNNM---LSGEIPNDIGSFSSLKVLDLG-----G--NVLVGKIP 181 (968)
T ss_pred CCCCEEECcCCccccccC------ccccCCCCEEECcCCc---ccccCChHHhcCCCCCEEECc-----c--CcccccCC
Confidence 455666665555432 12 1345666666666665 223355556667777777776 4 222 3456
Q ss_pred cccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCC
Q 048084 617 TNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIR 696 (967)
Q Consensus 617 ~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 696 (967)
..++++++|++|+|++|.....+|..+.++++|++|+|++|.....+|..++++++|++|++++|.....+|..++++++
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 66666777777777766633456666666777777777766644466666666777777777666444456666666666
Q ss_pred CCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccC----
Q 048084 697 LRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGR---- 772 (967)
Q Consensus 697 L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---- 772 (967)
|+.|.+..+......+ ..+.++++|+.|++.+... ....+..+..+++|+.|++++|.+..........
T Consensus 262 L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l----~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 262 LQYLFLYQNKLSGPIP---PSIFSLQKLISLDLSDNSL----SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred CCEEECcCCeeeccCc---hhHhhccCcCEEECcCCee----ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence 6666665544332111 1223334444444433211 1112233444555555555555322211100000
Q ss_pred --CCCch-hhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeec
Q 048084 773 --RENEE-DEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQ 848 (967)
Q Consensus 773 --~~~~~-~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~ 848 (967)
..... ......+..+..+++|+.|++++|.... ..|.++..+++|+.|++++|.+...+|. ++.+++|+.|+++
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~--~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG--EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe--eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 00000 0001123344455666666666665543 2255556666666666666655555554 6667777777777
Q ss_pred cccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCC
Q 048084 849 GMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQ 928 (967)
Q Consensus 849 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 928 (967)
+|.....++. .+..+++|+.|+++++. +. +..+..+..+++|+.|++++|.....+|..+.
T Consensus 413 ~n~l~~~~p~------------~~~~l~~L~~L~Ls~N~-l~-----~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~- 473 (968)
T PLN00113 413 DNSFSGELPS------------EFTKLPLVYFLDISNNN-LQ-----GRINSRKWDMPSLQMLSLARNKFFGGLPDSFG- 473 (968)
T ss_pred CCEeeeECCh------------hHhcCCCCCEEECcCCc-cc-----CccChhhccCCCCcEEECcCceeeeecCcccc-
Confidence 7542222221 23478899999999874 32 23333455789999999999977777886554
Q ss_pred CCCcCeEEEcCCcc
Q 048084 929 KTTLQELWISGCPI 942 (967)
Q Consensus 929 l~~L~~L~l~~c~~ 942 (967)
.++|+.|++++|..
T Consensus 474 ~~~L~~L~ls~n~l 487 (968)
T PLN00113 474 SKRLENLDLSRNQF 487 (968)
T ss_pred cccceEEECcCCcc
Confidence 68999999999975
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=7.1e-25 Score=229.82 Aligned_cols=348 Identities=20% Similarity=0.226 Sum_probs=171.5
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-c
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-T 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~ 617 (967)
+.++.+.+++|.+..+.. ..|.++++|+.+.+..|.+ .. +|.+.....+|+.|+|. + |.|.++. +
T Consensus 78 ~~t~~LdlsnNkl~~id~---~~f~nl~nLq~v~l~~N~L---t~-IP~f~~~sghl~~L~L~-----~--N~I~sv~se 143 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDF---EFFYNLPNLQEVNLNKNEL---TR-IPRFGHESGHLEKLDLR-----H--NLISSVTSE 143 (873)
T ss_pred cceeeeeccccccccCcH---HHHhcCCcceeeeeccchh---hh-cccccccccceeEEeee-----c--cccccccHH
Confidence 456666666666655432 4456666666666666652 22 34434444456666665 4 5555442 3
Q ss_pred ccccCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccC-ccccccccccEEecCCCccccccccC-CCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRYLPVG-IEEL 694 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~-~~~l 694 (967)
.+.-++.||.||||.|. |.++|. ++..-.++++|+|++|. ++.+- ..|.++.+|..|.|++| .++.+|.. |.+|
T Consensus 144 ~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L 220 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRL 220 (873)
T ss_pred HHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC-cccccCHHHhhhc
Confidence 45555666666666665 555553 34444566666666665 44433 23555556666666666 44555533 4446
Q ss_pred CCCCcCCceEecCcCCCccCccccccCCCCCC--eEEcCcCC---------------CCChhhhHHhhccCCCCCCcEEE
Q 048084 695 IRLRGVTKFVVGGGYDRACSLGSLKKLNLLRE--CWICGLGG---------------VSDAGEARRAELEKKKNLFKLGL 757 (967)
Q Consensus 695 ~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~--L~i~~l~~---------------~~~~~~~~~~~l~~~~~L~~L~l 757 (967)
++|+.|++..+......+..+..|.+|++|+. -+|+.+.. .+.........+.+++.|+.|++
T Consensus 221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhcc
Confidence 66666665555444333334444444443321 11111100 01111222233444555555555
Q ss_pred EeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC--
Q 048084 758 HFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-- 835 (967)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-- 835 (967)
++|.... ..+++.+.+++|+.|+|+.|.+.. +++..|..+..|+.|+|+.|... .+..
T Consensus 301 S~NaI~r-----------------ih~d~WsftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~a 360 (873)
T KOG4194|consen 301 SYNAIQR-----------------IHIDSWSFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNSID-HLAEGA 360 (873)
T ss_pred chhhhhe-----------------eecchhhhcccceeEecccccccc--CChhHHHHHHHhhhhcccccchH-HHHhhH
Confidence 5552111 112344445566666666666555 55555556666666666666322 2222
Q ss_pred CCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeecc
Q 048084 836 LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILR 915 (967)
Q Consensus 836 l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~ 915 (967)
+..+.+|+.|||+++ .+.....+. ...+.++++|++|.|.++ +|+.+.-. .+..+++|+.|++.+
T Consensus 361 f~~lssL~~LdLr~N--------~ls~~IEDa-a~~f~gl~~LrkL~l~gN-qlk~I~kr-----Afsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSN--------ELSWCIEDA-AVAFNGLPSLRKLRLTGN-QLKSIPKR-----AFSGLEALEHLDLGD 425 (873)
T ss_pred HHHhhhhhhhcCcCC--------eEEEEEecc-hhhhccchhhhheeecCc-eeeecchh-----hhccCcccceecCCC
Confidence 445566666666552 111111110 112345666666666654 45544421 344566666666666
Q ss_pred CccCcCCCcCCCCCCCcCeEEEcC
Q 048084 916 CLKLKALPDHLLQKTTLQELWISG 939 (967)
Q Consensus 916 c~~l~~lp~~~~~l~~L~~L~l~~ 939 (967)
|+.-+.-|..|..+ .|++|.++.
T Consensus 426 NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 426 NAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred Ccceeecccccccc-hhhhhhhcc
Confidence 64333334455544 566665543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=8.2e-25 Score=229.37 Aligned_cols=339 Identities=22% Similarity=0.221 Sum_probs=188.4
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-c
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-T 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~ 617 (967)
.++.++.+.+|.+..+.. +.+.-++.||+|+|+.|. +..+....|..-.++++|+|+ + |.|+.+- .
T Consensus 125 ghl~~L~L~~N~I~sv~s---e~L~~l~alrslDLSrN~---is~i~~~sfp~~~ni~~L~La-----~--N~It~l~~~ 191 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTS---EELSALPALRSLDLSRNL---ISEIPKPSFPAKVNIKKLNLA-----S--NRITTLETG 191 (873)
T ss_pred cceeEEeeeccccccccH---HHHHhHhhhhhhhhhhch---hhcccCCCCCCCCCceEEeec-----c--ccccccccc
Confidence 345555555555544432 344455555555555554 222222334444455555555 3 4444432 3
Q ss_pred ccccCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCccc-CccccccccccEEecCCCccccccccC-CCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLREL-PQGIGKLRKLMYLYNDRTESLRYLPVG-IEEL 694 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~-~~~l 694 (967)
.|.++.+|.+|.|+.|. ++.+|. .|.+|++|+.|+|..|. +... -..|.+|++|+.|.+..| .+..+..+ |..|
T Consensus 192 ~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGL 268 (873)
T ss_pred cccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhc-CcccccCcceeee
Confidence 34445555555555555 555553 33345555555555554 3332 223455555555555555 33333332 4445
Q ss_pred CCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCC
Q 048084 695 IRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRE 774 (967)
Q Consensus 695 ~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 774 (967)
.++++|++..+.........+-.| +.|+.|+++. +.........-..+++|+.|+|++|.+...+.
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgL---t~L~~L~lS~----NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~------- 334 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGL---TSLEQLDLSY----NAIQRIHIDSWSFTQKLKELDLSSNRITRLDE------- 334 (873)
T ss_pred cccceeecccchhhhhhccccccc---chhhhhccch----hhhheeecchhhhcccceeEeccccccccCCh-------
Confidence 555555555544433222222223 3333333322 11222223445577999999999996554332
Q ss_pred CchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCC----CCCCCCCccceeeccc
Q 048084 775 NEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLP----PLGKLPSLEDLKIQGM 850 (967)
Q Consensus 775 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~~c 850 (967)
+.+..+..|+.|+|++|.+.. +....|..+++|+.|+|+.|.+...+. .+.+|++|+.|++.|
T Consensus 335 ----------~sf~~L~~Le~LnLs~Nsi~~--l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g- 401 (873)
T KOG4194|consen 335 ----------GSFRVLSQLEELNLSHNSIDH--LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG- 401 (873)
T ss_pred ----------hHHHHHHHhhhhcccccchHH--HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-
Confidence 355667889999999999876 546677899999999999996543222 277899999999998
Q ss_pred cCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeec------cCccCcCCCc
Q 048084 851 QSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQIL------RCLKLKALPD 924 (967)
Q Consensus 851 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~------~c~~l~~lp~ 924 (967)
++++.++... +.++++|+.|+|.+++ +..+.. ..|..| .|++|-+. +| .++-++.
T Consensus 402 Nqlk~I~krA-----------fsgl~~LE~LdL~~Na-iaSIq~-----nAFe~m-~Lk~Lv~nSssflCDC-ql~Wl~q 462 (873)
T KOG4194|consen 402 NQLKSIPKRA-----------FSGLEALEHLDLGDNA-IASIQP-----NAFEPM-ELKELVMNSSSFLCDC-QLKWLAQ 462 (873)
T ss_pred ceeeecchhh-----------hccCcccceecCCCCc-ceeecc-----cccccc-hhhhhhhcccceEEec-cHHHHHH
Confidence 4466665433 4489999999999875 444432 244456 77777654 45 4444444
Q ss_pred CCCCCCCcCeEEEcCC
Q 048084 925 HLLQKTTLQELWISGC 940 (967)
Q Consensus 925 ~~~~l~~L~~L~l~~c 940 (967)
++.. ..++.-.+-.|
T Consensus 463 Wl~~-~~lq~sv~a~C 477 (873)
T KOG4194|consen 463 WLYR-RKLQSSVIAKC 477 (873)
T ss_pred HHHh-cccccceeeec
Confidence 4331 24444444444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.9e-25 Score=233.84 Aligned_cols=355 Identities=23% Similarity=0.227 Sum_probs=263.1
Q ss_pred EEEecCCcccccccccCcccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEe
Q 048084 521 LTVEIHSGEELAMSSFGEKKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKL 600 (967)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 600 (967)
..+.......+|......+++.|+++.+|....+- ..+..++.||++++..|++.. .. +|..+-.+..|.+|||
T Consensus 37 LkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh----GELs~Lp~LRsv~~R~N~LKn-sG-iP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 37 LKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH----GELSDLPRLRSVIVRDNNLKN-SG-IPTDIFRLKDLTILDL 110 (1255)
T ss_pred EEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh----hhhccchhhHHHhhhcccccc-CC-CCchhcccccceeeec
Confidence 33444455556655555578999999999987654 678899999999999998642 23 4555788999999999
Q ss_pred cccCcccccccccccccccccCCCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCccccccccccEEecC
Q 048084 601 EVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYND 679 (967)
Q Consensus 601 ~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~ 679 (967)
| + |.+.+.|..+..-+++-+|+||+|+ |+.+|.. +.+|+.|-+|||++|+ +..+|..+..|.+|++|.|+
T Consensus 111 S-----h--NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 111 S-----H--NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred c-----h--hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcC
Confidence 9 7 8899999999999999999999999 9999975 5599999999999999 99999999999999999999
Q ss_pred CCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEe
Q 048084 680 RTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHF 759 (967)
Q Consensus 680 ~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 759 (967)
+|+....--..+..|++|+.|.++....+- ......+..|.+|+.++++. +.-...+..+-++++|+.|+|+.
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl--~N~Ptsld~l~NL~dvDlS~-----N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTL--DNIPTSLDDLHNLRDVDLSE-----NNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchh--hcCCCchhhhhhhhhccccc-----cCCCcchHHHhhhhhhheeccCc
Confidence 996443322345567777777777665433 11222333444444433332 11123456778889999999999
Q ss_pred ecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCC-CCCCC-CC
Q 048084 760 CHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNR-EHLPP-LG 837 (967)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~l~~-l~ 837 (967)
|.++... .......+|++|+++.|.... + |..+..+++|+.|.+.+|++. +.+|. ++
T Consensus 255 N~iteL~------------------~~~~~W~~lEtLNlSrNQLt~--L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 255 NKITELN------------------MTEGEWENLETLNLSRNQLTV--L-PDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred Cceeeee------------------ccHHHHhhhhhhccccchhcc--c-hHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 9543321 122335689999999999987 7 899999999999999999644 45776 99
Q ss_pred CCCCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCc
Q 048084 838 KLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCL 917 (967)
Q Consensus 838 ~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 917 (967)
.|.+|+.+...+ ++++.+|..+ ..|+.|+.|.|+.+ .|-.++ ..+.-++.|+.|++.+||
T Consensus 314 KL~~Levf~aan-N~LElVPEgl------------cRC~kL~kL~L~~N-rLiTLP------eaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 314 KLIQLEVFHAAN-NKLELVPEGL------------CRCVKLQKLKLDHN-RLITLP------EAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhHHHHhhc-cccccCchhh------------hhhHHHHHhccccc-ceeech------hhhhhcCCcceeeccCCc
Confidence 999999999987 4566655443 37899999999876 454443 367789999999999999
Q ss_pred cCcCCCcCCCCCCCcCeEEEc
Q 048084 918 KLKALPDHLLQKTTLQELWIS 938 (967)
Q Consensus 918 ~l~~lp~~~~~l~~L~~L~l~ 938 (967)
++..-|.--..-.+|+.-+|.
T Consensus 374 nLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 374 NLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CccCCCCcchhhhcceeeecc
Confidence 988544221112345544443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=3.4e-23 Score=208.03 Aligned_cols=151 Identities=28% Similarity=0.362 Sum_probs=104.6
Q ss_pred cEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccccc
Q 048084 540 KILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNI 619 (967)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i 619 (967)
.+.-+.++++.....| .++..+..+..|++++|+ ... +|....++..|+.|+.+ + +...++|+++
T Consensus 69 ~l~vl~~~~n~l~~lp----~aig~l~~l~~l~vs~n~---ls~-lp~~i~s~~~l~~l~~s-----~--n~~~el~~~i 133 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLP----AAIGELEALKSLNVSHNK---LSE-LPEQIGSLISLVKLDCS-----S--NELKELPDSI 133 (565)
T ss_pred ceeEEEeccchhhhCC----HHHHHHHHHHHhhcccch---Hhh-ccHHHhhhhhhhhhhcc-----c--cceeecCchH
Confidence 4555666667666666 455677777777777776 333 45557777777777777 5 6666777777
Q ss_pred ccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCc
Q 048084 620 EKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRG 699 (967)
Q Consensus 620 ~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 699 (967)
+.+..|..|+..+|+ +..+|+.+.++.+|..|++.+|. ++.+|...-+++.|++|+...| .++.+|+.++.|.+|..
T Consensus 134 ~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLEL 210 (565)
T ss_pred HHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHH
Confidence 777777777777777 77777777777777777777776 6666666555777777777666 66777777777777776
Q ss_pred CCceEecCc
Q 048084 700 VTKFVVGGG 708 (967)
Q Consensus 700 L~~~~~~~~ 708 (967)
|++..+...
T Consensus 211 LyL~~Nki~ 219 (565)
T KOG0472|consen 211 LYLRRNKIR 219 (565)
T ss_pred HHhhhcccc
Confidence 666555443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2.8e-20 Score=232.91 Aligned_cols=319 Identities=21% Similarity=0.228 Sum_probs=205.8
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++.+.+..+.+..+|. .| ...+|+.|++.+|. +.. ++..+..+++|+.|+|+ +| +.+..+|.
T Consensus 589 ~~Lr~L~~~~~~l~~lP~----~f-~~~~L~~L~L~~s~---l~~-L~~~~~~l~~Lk~L~Ls-----~~-~~l~~ip~- 652 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPS----NF-RPENLVKLQMQGSK---LEK-LWDGVHSLTGLRNIDLR-----GS-KNLKEIPD- 652 (1153)
T ss_pred cccEEEEecCCCCCCCCC----cC-CccCCcEEECcCcc---ccc-cccccccCCCCCEEECC-----CC-CCcCcCCc-
Confidence 456677776666666653 22 45677777777776 322 34446677777777776 43 23555653
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLR 698 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 698 (967)
++.+++|++|+|++|..+..+|..+.++++|+.|++++|..++.+|..+ ++++|++|++++|..+..+|.. .++|+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 6677777777777776677777777777777777777777777777655 6777777777777666665543 23455
Q ss_pred cCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCCh---hhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCC
Q 048084 699 GVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDA---GEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRREN 775 (967)
Q Consensus 699 ~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 775 (967)
.|++..+.... +.....+++|..|.+..+...... ...........++|+.|++++|...
T Consensus 729 ~L~L~~n~i~~-----lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l------------ 791 (1153)
T PLN03210 729 WLDLDETAIEE-----FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL------------ 791 (1153)
T ss_pred eeecCCCcccc-----ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc------------
Confidence 55554443222 111112344444444332111000 0000111223468999999988422
Q ss_pred chhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceE
Q 048084 776 EEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKR 855 (967)
Q Consensus 776 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~ 855 (967)
..++..+..+++|+.|+|++|..... + |..+ ++++|+.|++++|..+..+|.+ .++|+.|+|+++ .++.
T Consensus 792 -----~~lP~si~~L~~L~~L~Ls~C~~L~~-L-P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i~~ 860 (1153)
T PLN03210 792 -----VELPSSIQNLHKLEHLEIENCINLET-L-PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GIEE 860 (1153)
T ss_pred -----cccChhhhCCCCCCEEECCCCCCcCe-e-CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCC-CCcc
Confidence 23456678889999999998865541 4 4444 7899999999999777766653 368899999873 3444
Q ss_pred eCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCC
Q 048084 856 VGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALP 923 (967)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 923 (967)
+|.. +..+++|+.|++.+|++|+.++. .+..+++|+.|++++|+.++.++
T Consensus 861 iP~s------------i~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 861 VPWW------------IEKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ChHH------------HhcCCCCCEEECCCCCCcCccCc------ccccccCCCeeecCCCccccccc
Confidence 4332 34788999999999999988765 44578899999999998887543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=8.4e-22 Score=198.06 Aligned_cols=349 Identities=22% Similarity=0.245 Sum_probs=253.7
Q ss_pred cEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccccc
Q 048084 540 KILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNI 619 (967)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i 619 (967)
.+..+.+.+|.+..+. ..+.++..|.+|++++|.. .. +|..++.+..+..|+.+ + +.+..+|..+
T Consensus 46 ~l~~lils~N~l~~l~----~dl~nL~~l~vl~~~~n~l---~~-lp~aig~l~~l~~l~vs-----~--n~ls~lp~~i 110 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLR----EDLKNLACLTVLNVHDNKL---SQ-LPAAIGELEALKSLNVS-----H--NKLSELPEQI 110 (565)
T ss_pred chhhhhhccCchhhcc----HhhhcccceeEEEeccchh---hh-CCHHHHHHHHHHHhhcc-----c--chHhhccHHH
Confidence 4556677777777665 5678999999999999983 33 56679999999999999 7 8899999999
Q ss_pred ccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCc
Q 048084 620 EKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRG 699 (967)
Q Consensus 620 ~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 699 (967)
+.+..|+.|++++|. +.++|++++.+..|+.|+..+|+ +..+|.++.++.+|..|++.+| .+..+|+..-+++.|++
T Consensus 111 ~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKH 187 (565)
T ss_pred hhhhhhhhhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999998 9999999999999999999999 77778877666999999
Q ss_pred CCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhh
Q 048084 700 VTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDE 779 (967)
Q Consensus 700 L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 779 (967)
|+...+.... ...++..+..|..|.+.. .. . .....|.+|..|.+|+++.| .
T Consensus 188 ld~~~N~L~t----lP~~lg~l~~L~~LyL~~---Nk-i--~~lPef~gcs~L~Elh~g~N------------------~ 239 (565)
T KOG0472|consen 188 LDCNSNLLET----LPPELGGLESLELLYLRR---NK-I--RFLPEFPGCSLLKELHVGEN------------------Q 239 (565)
T ss_pred cccchhhhhc----CChhhcchhhhHHHHhhh---cc-c--ccCCCCCccHHHHHHHhccc------------------H
Confidence 9887765543 223444444444433322 10 0 11225778888999999888 3
Q ss_pred HHHHhh-hCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCc
Q 048084 780 DERLLE-ALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGN 858 (967)
Q Consensus 780 ~~~~~~-~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~ 858 (967)
+..++. ....+++|..|+|++|...+ + |..+.-+.+|.+||+++|.+..-.+.++++ .|+.|-+.|.+ ++.+..
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdNklke--~-Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr 314 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDNKLKE--V-PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRR 314 (565)
T ss_pred HHhhHHHHhcccccceeeecccccccc--C-chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHH
Confidence 344444 34578999999999999998 8 888889999999999999655544559999 89999887743 111111
Q ss_pred c---------------------ccCCCCC---------CCCcccccccccccccccccccccccc---------------
Q 048084 859 E---------------------FLGVESD---------TDGSSVIAFPKLKLLRFDNMKELEELD--------------- 893 (967)
Q Consensus 859 ~---------------------~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~~L~~l~--------------- 893 (967)
. ....... .........-+.+.|++++. +++.++
T Consensus 315 ~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~V 393 (565)
T KOG0472|consen 315 EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSV 393 (565)
T ss_pred HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEE
Confidence 0 0000000 00001122234555554431 222111
Q ss_pred -cc----------------------------cccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCCc
Q 048084 894 -FR----------------------------TAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGCP 941 (967)
Q Consensus 894 -~~----------------------------~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 941 (967)
++ +..+..+..+++|..|++++| .+..+|..+..+..|+.|+|+.|.
T Consensus 394 nfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 394 NFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred ecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc
Confidence 10 112334567899999999988 899999999999999999999983
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=1.4e-19 Score=201.05 Aligned_cols=235 Identities=21% Similarity=0.181 Sum_probs=132.9
Q ss_pred cccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCC
Q 048084 672 KLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKN 751 (967)
Q Consensus 672 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~ 751 (967)
+|++++++.| .+..+|..++.+.+|+.+....+.... ....+-..+.|+.+.+... .-+..+..+.+.++
T Consensus 242 nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~----lp~ri~~~~~L~~l~~~~n-----el~yip~~le~~~s 311 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVA----LPLRISRITSLVSLSAAYN-----ELEYIPPFLEGLKS 311 (1081)
T ss_pred cceeeecchh-hhhcchHHHHhcccceEecccchhHHh----hHHHHhhhhhHHHHHhhhh-----hhhhCCCcccccce
Confidence 4555555555 556677777788888877776665532 1122222333333222111 11112334455778
Q ss_pred CCcEEEEeecCCCCCcccccCCCCchhhHHHH------hhh--CCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeE
Q 048084 752 LFKLGLHFCHSRDGDEEQAGRRENEEDEDERL------LEA--LGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLS 823 (967)
Q Consensus 752 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~ 823 (967)
|++|+|..|.+......+.......-...... ... -...+.|+.|.+.+|......+ ..+.++++|+.|+
T Consensus 312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~--p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF--PVLVNFKHLKVLH 389 (1081)
T ss_pred eeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch--hhhccccceeeee
Confidence 88888888865443322110000000000000 000 0113457777888777766433 4566888888888
Q ss_pred ecCccCCCCCCC--CCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccc
Q 048084 824 LIMWRNREHLPP--LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGE 901 (967)
Q Consensus 824 L~~~~~~~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~ 901 (967)
|++|+ +..+|. +.+++.|+.|+||| ++|+.++.. +..++.|+.|...++ +|..++ +
T Consensus 390 LsyNr-L~~fpas~~~kle~LeeL~LSG-NkL~~Lp~t------------va~~~~L~tL~ahsN-~l~~fP-------e 447 (1081)
T KOG0618|consen 390 LSYNR-LNSFPASKLRKLEELEELNLSG-NKLTTLPDT------------VANLGRLHTLRAHSN-QLLSFP-------E 447 (1081)
T ss_pred ecccc-cccCCHHHHhchHHhHHHhccc-chhhhhhHH------------HHhhhhhHHHhhcCC-ceeech-------h
Confidence 88884 444555 77788888888888 335555432 236777777766654 444443 5
Q ss_pred cccCcccceeeeccCccCcC--CCcCCCCCCCcCeEEEcCCcc
Q 048084 902 IIIMPRLSSLQILRCLKLKA--LPDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 902 ~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~ 942 (967)
+..++.|+.+|++.| .++. +|...- -++|+.|+++||+.
T Consensus 448 ~~~l~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEecccc-hhhhhhhhhhCC-CcccceeeccCCcc
Confidence 667889999999876 6664 343322 27899999999985
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=2.2e-19 Score=199.63 Aligned_cols=140 Identities=27% Similarity=0.371 Sum_probs=105.4
Q ss_pred ccccccCcccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccc
Q 048084 531 LAMSSFGEKKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCEN 610 (967)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~ 610 (967)
+|...+..+.+.++++..|..-..|. +...+.-+|++|++++|..+ . +|.-+..+.+|+.|+++ . |
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~pl---~~~~~~v~L~~l~lsnn~~~---~-fp~~it~l~~L~~ln~s-----~--n 78 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRPL---EFVEKRVKLKSLDLSNNQIS---S-FPIQITLLSHLRQLNLS-----R--N 78 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCch---HHhhheeeeEEeeccccccc---c-CCchhhhHHHHhhcccc-----h--h
Confidence 44333333445666666665544342 34455556999999999742 2 56668888999999998 6 7
Q ss_pred cccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccc
Q 048084 611 YIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRY 686 (967)
Q Consensus 611 ~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 686 (967)
.+..+|.+++++.+|++|+|.+|. +..+|.++..+++|++|++++|. ...+|..+..++.+..+..++|..+..
T Consensus 79 ~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~ 152 (1081)
T KOG0618|consen 79 YIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQR 152 (1081)
T ss_pred hHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhh
Confidence 888899889999999999999998 89999999999999999999998 778888777777777777777744333
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=3e-15 Score=173.20 Aligned_cols=254 Identities=20% Similarity=0.173 Sum_probs=153.3
Q ss_pred EEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccccccc
Q 048084 542 LHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEK 621 (967)
Q Consensus 542 ~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~ 621 (967)
..+.+..+.+..+|.. +. ++|+.|.+.+|.+. . +|. .+++|++|+|+ + |.+..+|..
T Consensus 204 ~~LdLs~~~LtsLP~~----l~--~~L~~L~L~~N~Lt---~-LP~---lp~~Lk~LdLs-----~--N~LtsLP~l--- 260 (788)
T PRK15387 204 AVLNVGESGLTTLPDC----LP--AHITTLVIPDNNLT---S-LPA---LPPELRTLEVS-----G--NQLTSLPVL--- 260 (788)
T ss_pred cEEEcCCCCCCcCCcc----hh--cCCCEEEccCCcCC---C-CCC---CCCCCcEEEec-----C--CccCcccCc---
Confidence 3456666666666632 22 47888888888743 2 332 25788899998 6 667777753
Q ss_pred CCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCC
Q 048084 622 LLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVT 701 (967)
Q Consensus 622 l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 701 (967)
.++|+.|+|++|. +..+|.. ..+|+.|++++|. ++.+|.. +++|+.|++++| .+..+|.... +|+.|.
T Consensus 261 p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp~---~L~~L~ 328 (788)
T PRK15387 261 PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALPS---ELCKLW 328 (788)
T ss_pred ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCCCcc---cccccc
Confidence 4578888998888 8887763 3568888898887 7788753 467888899888 5555554222 233333
Q ss_pred ceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHH
Q 048084 702 KFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDE 781 (967)
Q Consensus 702 ~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 781 (967)
+..+... .++. ...+|+.|+|++|.+..
T Consensus 329 Ls~N~L~--------~LP~---------------------------lp~~Lq~LdLS~N~Ls~----------------- 356 (788)
T PRK15387 329 AYNNQLT--------SLPT---------------------------LPSGLQELSVSDNQLAS----------------- 356 (788)
T ss_pred cccCccc--------cccc---------------------------cccccceEecCCCccCC-----------------
Confidence 2221110 0000 01367778887774322
Q ss_pred HHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCcccc
Q 048084 782 RLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFL 861 (967)
Q Consensus 782 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~ 861 (967)
++. .+++|+.|++++|.+.. + |.. ..+|+.|+|++|.+. .+|.. .++|+.|+++++. ++.+|.
T Consensus 357 -LP~---lp~~L~~L~Ls~N~L~~--L-P~l---~~~L~~LdLs~N~Lt-~LP~l--~s~L~~LdLS~N~-LssIP~--- 419 (788)
T PRK15387 357 -LPT---LPSELYKLWAYNNRLTS--L-PAL---PSGLKELIVSGNRLT-SLPVL--PSELKELMVSGNR-LTSLPM--- 419 (788)
T ss_pred -CCC---CCcccceehhhcccccc--C-ccc---ccccceEEecCCccc-CCCCc--ccCCCEEEccCCc-CCCCCc---
Confidence 111 13567778888777665 5 332 356788888887544 45542 3567778887733 222221
Q ss_pred CCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCcc
Q 048084 862 GVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLK 918 (967)
Q Consensus 862 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 918 (967)
.+.+|+.|+++++ +|+.++ ..+..+++|+.|++++|+.
T Consensus 420 ------------l~~~L~~L~Ls~N-qLt~LP------~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 420 ------------LPSGLLSLSVYRN-QLTRLP------ESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ------------chhhhhhhhhccC-cccccC------hHHhhccCCCeEECCCCCC
Confidence 2345666777665 455433 2455677777777777743
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=4.4e-15 Score=150.13 Aligned_cols=270 Identities=19% Similarity=0.140 Sum_probs=166.2
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc-
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT- 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~- 617 (967)
.....+.+..|.+..+|. ..|+.+++||.|+|++|. +..+-|+.|.+++.|..|-+- + +|.|+.+|.
T Consensus 67 ~~tveirLdqN~I~~iP~---~aF~~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvly-----g-~NkI~~l~k~ 134 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPP---GAFKTLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLY-----G-NNKITDLPKG 134 (498)
T ss_pred CcceEEEeccCCcccCCh---hhccchhhhceecccccc---hhhcChHhhhhhHhhhHHHhh-----c-CCchhhhhhh
Confidence 678889999999999986 678999999999999998 667789999999999888775 3 378999984
Q ss_pred ccccCCCCcEEEccCCCCccccc-hHHhccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCccccc---------
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLP-ETLCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTESLRY--------- 686 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~--------- 686 (967)
.|++|..|+-|.+.-|+ +..++ ..+..+++|..|.+..|. +..++. .+..+..++++.+..|+.+..
T Consensus 135 ~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred HhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 57889999999999998 77665 578899999999999998 888876 688899999999988863321
Q ss_pred ---cccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCC
Q 048084 687 ---LPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSR 763 (967)
Q Consensus 687 ---~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 763 (967)
.|..++......-..+............+. ..+..+.. .. ..............|..+++|++|+|++|.+.
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~--c~~esl~s-~~--~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFL--CSLESLPS-RL--SSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhh--hhHHhHHH-hh--ccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 111122211111111111111100000000 00000000 00 00000111222334666666666666666544
Q ss_pred CCCcccc-cC-----CCCchhhHHHH-hhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccC
Q 048084 764 DGDEEQA-GR-----RENEEDEDERL-LEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRN 829 (967)
Q Consensus 764 ~~~~~~~-~~-----~~~~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 829 (967)
......+ .. ..........+ -..+..+.+|+.|+|.+|++.. +.|..|..+.+|..|+|-.|.+
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~--~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT--VAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE--EecccccccceeeeeehccCcc
Confidence 3221110 00 00001112222 2245667778888888888776 6577777778888888776653
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.50 E-value=2.3e-12 Score=161.61 Aligned_cols=297 Identities=17% Similarity=0.194 Sum_probs=186.3
Q ss_pred CCCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecC-CCCHHH
Q 048084 172 SSIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSD-PFDEFR 250 (967)
Q Consensus 172 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~ 250 (967)
+|...+.+|-|++-.+.+.+. ...+++.|+|++|.||||++.++.+. +..++|+++.. ..+...
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---------~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~ 73 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---------NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPER 73 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---------cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHH
Confidence 444556788888555554321 25689999999999999999998863 22589999864 456667
Q ss_pred HHHHHHHHhccCCCC-------------CCChHHHHHHHHHHhc--cCcceEeecCCCCCChhhHH-HHHhhhcCCCCCc
Q 048084 251 IAKAIIEALTDSASN-------------FGEFQSLMQRIQKHVA--RKKLLLVLDDVWNENFYKWE-QFNNCLKNCLHGS 314 (967)
Q Consensus 251 ~~~~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~r~LlvlDdv~~~~~~~~~-~l~~~l~~~~~gs 314 (967)
+...++..+...... ..........+...+. +.+++|||||++..+..... .+...++....+.
T Consensus 74 f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~ 153 (903)
T PRK04841 74 FASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENL 153 (903)
T ss_pred HHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCe
Confidence 777777777422111 0122233333333332 67999999999876544444 4555555555677
Q ss_pred EEEEecCChhHH---hhhCCcceeecC----CCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHH
Q 048084 315 KILITTRKEAIA---RIMGSIDIISIN----VLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIA 387 (967)
Q Consensus 315 ~iliTtr~~~v~---~~~~~~~~~~l~----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (967)
++|||||...-. .........+++ +|+.+|+.++|........ ..+.+.+|++.|+|.|+++..++
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHH
Confidence 898999974211 111112245555 9999999999986543211 12337789999999999999999
Q ss_pred HHHccCCC-HHHHHHHHhhhhhhhhh-hcccchhHHH-HhHhcCChhhHHHHhhhccCCCCcccCHHHHHHHHHhcCCcc
Q 048084 388 SLLRSKNT-RKEWQNILESEIWELEA-VKKGLLAPLL-LSYNELPSKVKHCFSYCAVFPKDYEMWKDKLIELWMAQGFLN 464 (967)
Q Consensus 388 ~~l~~~~~-~~~w~~~l~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~k~~~~~~~~fp~~~~i~~~~li~~w~a~g~~~ 464 (967)
..+..... .... . +.+.. ....+...+. -.++.||++.+..+...|+++ . ++.+.+-.. ..
T Consensus 227 ~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~--~~~~l~~~l------~~ 290 (903)
T PRK04841 227 LSARQNNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-S--MNDALIVRV------TG 290 (903)
T ss_pred HHHhhCCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--CCHHHHHHH------cC
Confidence 87754432 1111 0 11111 1123444443 348899999999999999986 3 333322211 11
Q ss_pred ccccccHHHHHHHHHHHHHhCCCccccCCCCCCCeeeEEecchHHHHHHHhh
Q 048084 465 NKRNKEMAEIGEEYFNVLASRSFFQDFGRGYDGEIYDCKMHDIVHDFAQYLC 516 (967)
Q Consensus 465 ~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hd~i~~~~~~~~ 516 (967)
.+.+...+++|...+++.....+ ...+|+.|++++++++...
T Consensus 291 -------~~~~~~~L~~l~~~~l~~~~~~~---~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 -------EENGQMRLEELERQGLFIQRMDD---SGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -------CCcHHHHHHHHHHCCCeeEeecC---CCCEEehhHHHHHHHHHHH
Confidence 11246779999999997532111 1135788999999998765
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=2.6e-13 Score=157.30 Aligned_cols=235 Identities=23% Similarity=0.205 Sum_probs=164.8
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++.|.+..|.+..+|. ..++|++|++++|.+. . +|. ..++|+.|+|+ + |.+..+|..
T Consensus 222 ~~L~~L~L~~N~Lt~LP~-------lp~~Lk~LdLs~N~Lt---s-LP~---lp~sL~~L~Ls-----~--N~L~~Lp~l 280 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA-------LPPELRTLEVSGNQLT---S-LPV---LPPGLLELSIF-----S--NPLTHLPAL 280 (788)
T ss_pred cCCCEEEccCCcCCCCCC-------CCCCCcEEEecCCccC---c-ccC---cccccceeecc-----C--Cchhhhhhc
Confidence 478899999999988772 3589999999999843 3 343 24689999998 6 667777753
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLR 698 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 698 (967)
..+|+.|+|++|. ++.+|.. +++|++|+|++|. ++.+|... .+|+.|++++| .+..+|.. ..+|+
T Consensus 281 ---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l---p~~Lq 345 (788)
T PRK15387 281 ---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAYNN-QLTSLPTL---PSGLQ 345 (788)
T ss_pred ---hhhcCEEECcCCc-ccccccc---ccccceeECCCCc-cccCCCCc---ccccccccccC-cccccccc---ccccc
Confidence 3568899999998 9999863 5789999999998 88887633 45788899988 66667642 13566
Q ss_pred cCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchh
Q 048084 699 GVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEED 778 (967)
Q Consensus 699 ~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 778 (967)
.|++..+.... ++. ...+|+.|++++|.+..
T Consensus 346 ~LdLS~N~Ls~--------LP~---------------------------lp~~L~~L~Ls~N~L~~-------------- 376 (788)
T PRK15387 346 ELSVSDNQLAS--------LPT---------------------------LPSELYKLWAYNNRLTS-------------- 376 (788)
T ss_pred eEecCCCccCC--------CCC---------------------------CCcccceehhhcccccc--------------
Confidence 66665443221 110 01356667777773221
Q ss_pred hHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCc
Q 048084 779 EDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGN 858 (967)
Q Consensus 779 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~ 858 (967)
++. .+++|+.|+|++|.+.. + |.. .++|+.|++++|.+. .+|.+ +.+|+.|+++++. ++.+|.
T Consensus 377 ----LP~---l~~~L~~LdLs~N~Lt~--L-P~l---~s~L~~LdLS~N~Ls-sIP~l--~~~L~~L~Ls~Nq-Lt~LP~ 439 (788)
T PRK15387 377 ----LPA---LPSGLKELIVSGNRLTS--L-PVL---PSELKELMVSGNRLT-SLPML--PSGLLSLSVYRNQ-LTRLPE 439 (788)
T ss_pred ----Ccc---cccccceEEecCCcccC--C-CCc---ccCCCEEEccCCcCC-CCCcc--hhhhhhhhhccCc-ccccCh
Confidence 111 13579999999998876 6 432 468999999999654 46653 3578999998833 555543
Q ss_pred cccCCCCCCCCcccccccccccccccccc
Q 048084 859 EFLGVESDTDGSSVIAFPKLKLLRFDNMK 887 (967)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 887 (967)
. +..+++|+.|+|++++
T Consensus 440 s------------l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 440 S------------LIHLSSETTVNLEGNP 456 (788)
T ss_pred H------------HhhccCCCeEECCCCC
Confidence 3 3368899999999885
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=8e-14 Score=162.81 Aligned_cols=135 Identities=24% Similarity=0.347 Sum_probs=94.4
Q ss_pred cEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccccc
Q 048084 540 KILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNI 619 (967)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i 619 (967)
+...+.+....+..+|..+ .++|+.|++++|.+ .. +|..+ +.+|+.|+++ + |.+..+|..+
T Consensus 179 ~~~~L~L~~~~LtsLP~~I------p~~L~~L~Ls~N~L---ts-LP~~l--~~nL~~L~Ls-----~--N~LtsLP~~l 239 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI------PEQITTLILDNNEL---KS-LPENL--QGNIKTLYAN-----S--NQLTSIPATL 239 (754)
T ss_pred CceEEEeCCCCcCcCCccc------ccCCcEEEecCCCC---Cc-CChhh--ccCCCEEECC-----C--CccccCChhh
Confidence 4456777777777776322 25788999999874 33 34333 2589999998 6 5677788655
Q ss_pred ccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCc
Q 048084 620 EKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRG 699 (967)
Q Consensus 620 ~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 699 (967)
. .+|+.|+|++|. +..+|..+. .+|++|++++|. ++.+|..+. ++|++|++++| .+..+|..+. ++|+.
T Consensus 240 ~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~ 308 (754)
T PRK15370 240 P--DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITH 308 (754)
T ss_pred h--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHH
Confidence 4 478999999998 888887664 589999999887 778887664 58999999988 6666665432 24455
Q ss_pred CCceE
Q 048084 700 VTKFV 704 (967)
Q Consensus 700 L~~~~ 704 (967)
|++..
T Consensus 309 L~Ls~ 313 (754)
T PRK15370 309 LNVQS 313 (754)
T ss_pred HHhcC
Confidence 54443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=1.1e-13 Score=161.78 Aligned_cols=248 Identities=18% Similarity=0.192 Sum_probs=138.1
Q ss_pred CccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhcc
Q 048084 567 GLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCEL 646 (967)
Q Consensus 567 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l 646 (967)
+...|.++++.+. . +|..+ .+.|+.|+|+ + |.+..+|..+. .+|++|++++|. ++.+|..+.
T Consensus 179 ~~~~L~L~~~~Lt---s-LP~~I--p~~L~~L~Ls-----~--N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~-- 240 (754)
T PRK15370 179 NKTELRLKILGLT---T-IPACI--PEQITTLILD-----N--NELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP-- 240 (754)
T ss_pred CceEEEeCCCCcC---c-CCccc--ccCCcEEEec-----C--CCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--
Confidence 4566777776633 2 23322 2468888887 6 66777776654 478888888887 778876553
Q ss_pred CCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCC
Q 048084 647 YNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRE 726 (967)
Q Consensus 647 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~ 726 (967)
.+|+.|+|++|. +..+|..+. .+|+.|++++| .+..+|..+. .+|+.|++..+.... ++
T Consensus 241 ~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~-----------LP---- 299 (754)
T PRK15370 241 DTIQEMELSINR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRT-----------LP---- 299 (754)
T ss_pred ccccEEECcCCc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCcccc-----------Cc----
Confidence 468888888887 677776653 47888888877 5566665443 345555443322110 00
Q ss_pred eEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCC
Q 048084 727 CWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRN 806 (967)
Q Consensus 727 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 806 (967)
..+ ..+|+.|++++|.+.. ++.. .+++|+.|++++|.+..
T Consensus 300 -----------------~~l--p~sL~~L~Ls~N~Lt~------------------LP~~--l~~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 300 -----------------AHL--PSGITHLNVQSNSLTA------------------LPET--LPPGLKTLEAGENALTS- 339 (754)
T ss_pred -----------------ccc--hhhHHHHHhcCCcccc------------------CCcc--ccccceeccccCCcccc-
Confidence 000 1246666676663221 1111 12567777777777665
Q ss_pred CCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCccccCCCCCCCCccccccccccccccccc
Q 048084 807 VVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNM 886 (967)
Q Consensus 807 ~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 886 (967)
+ |..+ +++|+.|++++|.+. .+|. .-.++|+.|+|++|. ++.+|.. -.++|+.|+++++
T Consensus 340 -L-P~~l--~~sL~~L~Ls~N~L~-~LP~-~lp~~L~~LdLs~N~-Lt~LP~~--------------l~~sL~~LdLs~N 398 (754)
T PRK15370 340 -L-PASL--PPELQVLDVSKNQIT-VLPE-TLPPTITTLDVSRNA-LTNLPEN--------------LPAALQIMQASRN 398 (754)
T ss_pred -C-Chhh--cCcccEEECCCCCCC-cCCh-hhcCCcCEEECCCCc-CCCCCHh--------------HHHHHHHHhhccC
Confidence 5 4333 257777777777443 3443 113567777777643 3222211 1134666666664
Q ss_pred ccccccccccccccccccCcccceeeeccCc
Q 048084 887 KELEELDFRTAIKGEIIIMPRLSSLQILRCL 917 (967)
Q Consensus 887 ~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 917 (967)
+|+.++- ..+.....++++..|++.+|+
T Consensus 399 -~L~~LP~--sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 399 -NLVRLPE--SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -CcccCch--hHHHHhhcCCCccEEEeeCCC
Confidence 3443321 111112234556666666664
No 21
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=7.4e-11 Score=132.21 Aligned_cols=317 Identities=15% Similarity=0.101 Sum_probs=184.3
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..+..|+||++++++|...+...-. ......+.|+|++|+|||++++.++++.......-.++|+++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3556799999999999999854321 22445688999999999999999998633222223467777777778888999
Q ss_pred HHHHHhccC-C-CCCCChHHHHHHHHHHhc--cCcceEeecCCCCCC----hhhHHHHHhhhcCCCCCcE--EEEecCCh
Q 048084 254 AIIEALTDS-A-SNFGEFQSLMQRIQKHVA--RKKLLLVLDDVWNEN----FYKWEQFNNCLKNCLHGSK--ILITTRKE 323 (967)
Q Consensus 254 ~i~~~l~~~-~-~~~~~~~~~~~~l~~~l~--~~r~LlvlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iliTtr~~ 323 (967)
.+++++... . ....+.+++...+.+.+. +++.+||+|+++... .+.+..+...+.. ..+++ +|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 999998752 2 222356677777777764 456899999997642 1223333332222 12333 55555544
Q ss_pred hHHhhhC-------CcceeecCCCChhhHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHcCCChhHHHHHHHHH--c-
Q 048084 324 AIARIMG-------SIDIISINVLSEIECWSVFELLAFSGK--SMEERENLEKIGREIVGKCKGLPLAAKTIASLL--R- 391 (967)
Q Consensus 324 ~v~~~~~-------~~~~~~l~~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l--~- 391 (967)
.+..... ....+.+++.+.++..+++..++.... ....+..+..+++......|..+.|+.++-.+. .
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3322211 124689999999999999988764321 111222222233333333455777777664332 1
Q ss_pred -c-C--CCHHHHHHHHhhhhhhhhhhcccchhHHHHhHhcCChhhHHHHhhhccCCC--CcccCHHHHHHHH--HhcCCc
Q 048084 392 -S-K--NTRKEWQNILESEIWELEAVKKGLLAPLLLSYNELPSKVKHCFSYCAVFPK--DYEMWKDKLIELW--MAQGFL 463 (967)
Q Consensus 392 -~-~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~~~~fp~--~~~i~~~~li~~w--~a~g~~ 463 (967)
. . -+.+....++... ......-.+..||.+.|..+..++..-+ ...+....+.... +++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 1 1445554444422 1122345688999988876665553321 1345566655432 222111
Q ss_pred cccccccHHHHHHHHHHHHHhCCCccccC--CCCCCCeeeEEecc
Q 048084 464 NNKRNKEMAEIGEEYFNVLASRSFFQDFG--RGYDGEIYDCKMHD 506 (967)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~~~~~~~hd 506 (967)
. ...+ ......|+.+|...|++.... .+..|..+.++.+.
T Consensus 334 ~--~~~~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 334 Y--EPRT-HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred C--CcCc-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 0 0111 223466999999999997643 23345555555543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=3.6e-15 Score=132.91 Aligned_cols=164 Identities=29% Similarity=0.290 Sum_probs=94.3
Q ss_pred ccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccc
Q 048084 590 DKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGK 669 (967)
Q Consensus 590 ~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~ 669 (967)
-.+.+.+.|.|| + |.+..+|..|..+.+|+.|++++|+ |+++|.+++.+++|+.|++.-|+ +..+|.+|+.
T Consensus 30 f~~s~ITrLtLS-----H--NKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs 100 (264)
T KOG0617|consen 30 FNMSNITRLTLS-----H--NKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGS 100 (264)
T ss_pred cchhhhhhhhcc-----c--CceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCC
Confidence 344455555555 4 5555555555555555555555555 55555555555555555555555 5555555555
Q ss_pred cccccEEecCCCcccc-ccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccC
Q 048084 670 LRKLMYLYNDRTESLR-YLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEK 748 (967)
Q Consensus 670 l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~ 748 (967)
++.|+.|++.+|..-+ .+|.. |..
T Consensus 101 ~p~levldltynnl~e~~lpgn-------------------------------------------------------ff~ 125 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGN-------------------------------------------------------FFY 125 (264)
T ss_pred CchhhhhhccccccccccCCcc-------------------------------------------------------hhH
Confidence 5555555555542111 12221 222
Q ss_pred CCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCcc
Q 048084 749 KKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWR 828 (967)
Q Consensus 749 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 828 (967)
++.|+-|.++.| ..+.++...+.+.+|+.|.+..|...+ + |..++.+..|+.|.+.+|.
T Consensus 126 m~tlralyl~dn------------------dfe~lp~dvg~lt~lqil~lrdndll~--l-pkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 126 MTTLRALYLGDN------------------DFEILPPDVGKLTNLQILSLRDNDLLS--L-PKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHhcCC------------------CcccCChhhhhhcceeEEeeccCchhh--C-cHHHHHHHHHHHHhcccce
Confidence 344455555555 223445566777888888888888777 7 7788888888888888885
Q ss_pred CCCCCCCCCC
Q 048084 829 NREHLPPLGK 838 (967)
Q Consensus 829 ~~~~l~~l~~ 838 (967)
.....|.+++
T Consensus 185 l~vlppel~~ 194 (264)
T KOG0617|consen 185 LTVLPPELAN 194 (264)
T ss_pred eeecChhhhh
Confidence 5443333443
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=5.8e-15 Score=131.62 Aligned_cols=149 Identities=26% Similarity=0.372 Sum_probs=88.3
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
+.+.++.++++.+..+|. .+..+.+|++|++++|. +.. +|..++++++||.|++. - |.+..+|..
T Consensus 33 s~ITrLtLSHNKl~~vpp----nia~l~nlevln~~nnq---ie~-lp~~issl~klr~lnvg-----m--nrl~~lprg 97 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPP----NIAELKNLEVLNLSNNQ---IEE-LPTSISSLPKLRILNVG-----M--NRLNILPRG 97 (264)
T ss_pred hhhhhhhcccCceeecCC----cHHHhhhhhhhhcccch---hhh-cChhhhhchhhhheecc-----h--hhhhcCccc
Confidence 455566666666665552 34556666666666665 333 44446666666666665 3 445556666
Q ss_pred cccCCCCcEEEccCCCCcc--ccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCC
Q 048084 619 IEKLLHLKYLNLFCQREIE--KLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIR 696 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~--~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 696 (967)
||.++.|+.|||++|. +. .+|..|..+..|+-|.|++|. .+.+|..++++++|+.|.+.+| .+-.+|++++.++.
T Consensus 98 fgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~ 174 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTR 174 (264)
T ss_pred cCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHH
Confidence 6666666666666665 33 456666666666666666665 5666666666666666666666 44456666666666
Q ss_pred CCcCCceEe
Q 048084 697 LRGVTKFVV 705 (967)
Q Consensus 697 L~~L~~~~~ 705 (967)
|+.|.+-++
T Consensus 175 lrelhiqgn 183 (264)
T KOG0617|consen 175 LRELHIQGN 183 (264)
T ss_pred HHHHhcccc
Confidence 666555443
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=4.9e-14 Score=142.63 Aligned_cols=282 Identities=17% Similarity=0.131 Sum_probs=182.2
Q ss_pred ecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-ccccccCCCCc
Q 048084 548 LDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIEKLLHLK 626 (967)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~~l~~L~ 626 (967)
.....++|..+| +.-..|.|..|. +..+.+..|..+++||.|||| + |.|+.| |..|.++..|-
T Consensus 55 ~~GL~eVP~~LP------~~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS-----~--N~Is~I~p~AF~GL~~l~ 118 (498)
T KOG4237|consen 55 GKGLTEVPANLP------PETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLS-----K--NNISFIAPDAFKGLASLL 118 (498)
T ss_pred CCCcccCcccCC------CcceEEEeccCC---cccCChhhccchhhhceeccc-----c--cchhhcChHhhhhhHhhh
Confidence 344566664332 345678888998 667789999999999999999 7 888887 78899999988
Q ss_pred EEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccC-ccccccccccEEecCCCcccccccc-CCCCCCCCCcCCce
Q 048084 627 YLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRYLPV-GIEELIRLRGVTKF 703 (967)
Q Consensus 627 ~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~~~ 703 (967)
.|-+-+|+.|+.+|+ .|.+|..|+.|.+.-|. +..++ ..+..|++|..|.+.+| .+..+++ .+..+.+++++.+-
T Consensus 119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhh
Confidence 888877444999996 68899999999999998 65554 56899999999999998 7778887 57888888887765
Q ss_pred EecCcCCCccCccccccCCCCCC----e--EEcCcCCCCC-------hhhhHHhhc-cCCCCCCcEEEEeecCCCCCccc
Q 048084 704 VVGGGYDRACSLGSLKKLNLLRE----C--WICGLGGVSD-------AGEARRAEL-EKKKNLFKLGLHFCHSRDGDEEQ 769 (967)
Q Consensus 704 ~~~~~~~~~~~l~~l~~L~~L~~----L--~i~~l~~~~~-------~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~ 769 (967)
.+..-. ..+|+.+.. + ...+..-... ........+ .....+.+--.+.|+.
T Consensus 197 ~np~ic--------dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~------- 261 (498)
T KOG4237|consen 197 QNPFIC--------DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP------- 261 (498)
T ss_pred cCcccc--------ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc-------
Confidence 544211 111211110 0 0000000000 000000000 0000111000111100
Q ss_pred ccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCC-CCCCCCCccceeec
Q 048084 770 AGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLP-PLGKLPSLEDLKIQ 848 (967)
Q Consensus 770 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 848 (967)
....-...+..+++|++|+|++|.+.. +.+.||.....++.|.|..|++-..-. .+.++..|+.|+|.
T Consensus 262 ---------d~~cP~~cf~~L~~L~~lnlsnN~i~~--i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 262 ---------DSICPAKCFKKLPNLRKLNLSNNKITR--IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred ---------CCcChHHHHhhcccceEeccCCCccch--hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence 000111247788999999999999988 768999999999999999995443222 27889999999999
Q ss_pred cccCceEeCccccCCCCCCCCcccccccccccccccc
Q 048084 849 GMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDN 885 (967)
Q Consensus 849 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 885 (967)
++. |+.+... .+....+|.+|.+-.
T Consensus 331 ~N~-it~~~~~-----------aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 331 DNQ-ITTVAPG-----------AFQTLFSLSTLNLLS 355 (498)
T ss_pred CCe-eEEEecc-----------cccccceeeeeehcc
Confidence 833 3333211 123556677776654
No 25
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.32 E-value=2.3e-10 Score=128.47 Aligned_cols=302 Identities=18% Similarity=0.204 Sum_probs=194.8
Q ss_pred CCCCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecC-CCCHH
Q 048084 171 ISSIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSD-PFDEF 249 (967)
Q Consensus 171 ~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~ 249 (967)
.+|..+...|-|.+- .+.|.. ....+.+.|..++|.|||||+.+.... ...-..+.|+++++ ..+..
T Consensus 13 ~~P~~~~~~v~R~rL----~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~ 80 (894)
T COG2909 13 VRPVRPDNYVVRPRL----LDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPA 80 (894)
T ss_pred CCCCCcccccccHHH----HHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHH
Confidence 344456667778754 444432 237899999999999999999888752 12234689999875 46778
Q ss_pred HHHHHHHHHhccCCCC-------------CCChHHHHHHHHHHhc--cCcceEeecCCCCCChhhHHH-HHhhhcCCCCC
Q 048084 250 RIAKAIIEALTDSASN-------------FGEFQSLMQRIQKHVA--RKKLLLVLDDVWNENFYKWEQ-FNNCLKNCLHG 313 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~r~LlvlDdv~~~~~~~~~~-l~~~l~~~~~g 313 (967)
.+...++..+..-.++ ..+...+...+...+. .++..+||||..-........ +..++.....+
T Consensus 81 rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~ 160 (894)
T COG2909 81 RFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPEN 160 (894)
T ss_pred HHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCC
Confidence 8888888887643222 2334445555555443 468899999996543333333 55555666678
Q ss_pred cEEEEecCChhHHhhh---CCcceeec----CCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 314 SKILITTRKEAIARIM---GSIDIISI----NVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 314 s~iliTtr~~~v~~~~---~~~~~~~l----~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
-.+|||||+..-.... -.....++ -.|+.+|+.++|....... .+ ..-++.+.+..+|-+-|+..+
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~---Ld----~~~~~~L~~~teGW~~al~L~ 233 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP---LD----AADLKALYDRTEGWAAALQLI 233 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC---CC----hHHHHHHHhhcccHHHHHHHH
Confidence 8999999986422211 01122333 3589999999998764221 11 223788999999999999999
Q ss_pred HHHHccCCCHHHHHHHHhhhhhhhhhhcccchhH-HHHhHhcCChhhHHHHhhhccCCCCcccCHHHHHHHHHhcCCccc
Q 048084 387 ASLLRSKNTRKEWQNILESEIWELEAVKKGLLAP-LLLSYNELPSKVKHCFSYCAVFPKDYEMWKDKLIELWMAQGFLNN 465 (967)
Q Consensus 387 ~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~k~~~~~~~~fp~~~~i~~~~li~~w~a~g~~~~ 465 (967)
+-.++.+.+.+.-...+. +..+-+..- ..--++.||+++|..+.-||+++. + -..|+..-.
T Consensus 234 aLa~~~~~~~~q~~~~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f-~~eL~~~Lt------- 295 (894)
T COG2909 234 ALALRNNTSAEQSLRGLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---F-NDELCNALT------- 295 (894)
T ss_pred HHHccCCCcHHHHhhhcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---h-hHHHHHHHh-------
Confidence 999885444333222221 111112222 234688999999999999999853 1 122333221
Q ss_pred cccccHHHHHHHHHHHHHhCCCccc-cCCCCCCCeeeEEecchHHHHHHHhhcc
Q 048084 466 KRNKEMAEIGEEYFNVLASRSFFQD-FGRGYDGEIYDCKMHDIVHDFAQYLCSN 518 (967)
Q Consensus 466 ~~~~~~~~~~~~~l~~L~~~~ll~~-~~~~~~~~~~~~~~hd~i~~~~~~~~~~ 518 (967)
-++.+..++++|.+++++-. .+. ...+|+.|.++.+|.+.-...
T Consensus 296 -----g~~ng~amLe~L~~~gLFl~~Ldd----~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 -----GEENGQAMLEELERRGLFLQRLDD----EGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -----cCCcHHHHHHHHHhCCCceeeecC----CCceeehhHHHHHHHHhhhcc
Confidence 12447888999999998753 322 234689999999999876554
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=4e-10 Score=119.13 Aligned_cols=183 Identities=17% Similarity=0.129 Sum_probs=118.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH---
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKH--- 279 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--- 279 (967)
+..++.|+|++|+||||+++.+++..... .+ .+.|+ +....+..+++..++..++..... .........+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHH
Confidence 34689999999999999999999863311 11 12233 333457778889999888765332 2223333333332
Q ss_pred -h-ccCcceEeecCCCCCChhhHHHHHhhhcCC---CCCcEEEEecCChhHHhhhC----------CcceeecCCCChhh
Q 048084 280 -V-ARKKLLLVLDDVWNENFYKWEQFNNCLKNC---LHGSKILITTRKEAIARIMG----------SIDIISINVLSEIE 344 (967)
Q Consensus 280 -l-~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~---~~gs~iliTtr~~~v~~~~~----------~~~~~~l~~l~~~~ 344 (967)
. .+++.++|+||++......++.+....... .....|++|.... ....+. ....+.+++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 577899999999987766677666443221 1223455555432 221111 13367899999999
Q ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 345 CWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 345 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
..+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987764333211112234678999999999999999998876
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.27 E-value=1.9e-09 Score=119.54 Aligned_cols=304 Identities=13% Similarity=0.077 Sum_probs=173.9
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc-ccC---CceEEEEecCCCCHH
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK-KYF---DERIWVCVSDPFDEF 249 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~ 249 (967)
..+..++||++++++|...+...-. ......+.|+|++|+|||++++.++++.... ... -.++|+++....+..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 3445799999999999999864321 2244679999999999999999999852211 111 245788887777788
Q ss_pred HHHHHHHHHhc---cCCC-CCCChHHHHHHHHHHhc--cCcceEeecCCCCCC---hhhHHHHHhhhcC-CC--CCcEEE
Q 048084 250 RIAKAIIEALT---DSAS-NFGEFQSLMQRIQKHVA--RKKLLLVLDDVWNEN---FYKWEQFNNCLKN-CL--HGSKIL 317 (967)
Q Consensus 250 ~~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~~r~LlvlDdv~~~~---~~~~~~l~~~l~~-~~--~gs~il 317 (967)
.++..+++++. ...+ ...+..+....+.+.+. +++++||||+++... ...+..+...... .. ....+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 89999999984 2211 12244555556666553 567899999997652 1112222222101 11 222344
Q ss_pred EecCChhHHhhhC-------CcceeecCCCChhhHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHcCCChhHHHHHH-H
Q 048084 318 ITTRKEAIARIMG-------SIDIISINVLSEIECWSVFELLAFSG-KSMEERENLEKIGREIVGKCKGLPLAAKTIA-S 388 (967)
Q Consensus 318 iTtr~~~v~~~~~-------~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~-~ 388 (967)
.++........+. ....+.+++.+.++..+++..++... ......++..+...+++....|.|..+..+. .
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4554333221111 12468999999999999999876421 1111223334455667777788885443322 1
Q ss_pred HH----cc-C--CCHHHHHHHHhhhhhhhhhhcccchhHHHHhHhcCChhhHHHHhhhccCC--CCcccCHHHHHHHHH-
Q 048084 389 LL----RS-K--NTRKEWQNILESEIWELEAVKKGLLAPLLLSYNELPSKVKHCFSYCAVFP--KDYEMWKDKLIELWM- 458 (967)
Q Consensus 389 ~l----~~-~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~~~~fp--~~~~i~~~~li~~w~- 458 (967)
.. .. . -+.+......... -.....-.+..||.+.+..+..++..- .+-.+...++...+-
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 11 1 1334443333321 012234467788988886665554221 333466666666432
Q ss_pred -hcCCccccccccHHHHHHHHHHHHHhCCCccccC
Q 048084 459 -AQGFLNNKRNKEMAEIGEEYFNVLASRSFFQDFG 492 (967)
Q Consensus 459 -a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 492 (967)
++.+ .. . .........++..|...|++....
T Consensus 320 ~~~~~-~~-~-~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDI-GV-D-PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhc-CC-C-CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 2211 11 1 112344677889999999997643
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.26 E-value=3.3e-12 Score=151.72 Aligned_cols=247 Identities=26% Similarity=0.277 Sum_probs=148.1
Q ss_pred ccEEEEEEEecC--CCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc
Q 048084 539 KKILHLMLALDR--GALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP 616 (967)
Q Consensus 539 ~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp 616 (967)
++++.+-+..+. ...++. ..|..++.||+|++++|. ....+|+.++.+-+||+|+|+ + +.+..+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~---~ff~~m~~LrVLDLs~~~---~l~~LP~~I~~Li~LryL~L~-----~--t~I~~LP 611 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISG---EFFRSLPLLRVLDLSGNS---SLSKLPSSIGELVHLRYLDLS-----D--TGISHLP 611 (889)
T ss_pred CccceEEEeecchhhhhcCH---HHHhhCcceEEEECCCCC---ccCcCChHHhhhhhhhccccc-----C--CCccccc
Confidence 468888888875 455553 458899999999999986 223489999999999999999 7 7789999
Q ss_pred cccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCcccc-ccccCCCCCC
Q 048084 617 TNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLR-YLPVGIEELI 695 (967)
Q Consensus 617 ~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~ 695 (967)
.++++|..|.+||+..+.....+|.....+++|++|.+.... ...-...++.+.+|++|..-.+.... .+-..+..++
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~ 690 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT 690 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence 999999999999999998677777777789999999998754 22211223444444444332221101 1111122222
Q ss_pred CCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCC
Q 048084 696 RLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRREN 775 (967)
Q Consensus 696 ~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 775 (967)
.|..+..... +.. .........+..+.+|+.|.+..|........
T Consensus 691 ~L~~~~~~l~-----------------------~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~------- 735 (889)
T KOG4658|consen 691 RLRSLLQSLS-----------------------IEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVIE------- 735 (889)
T ss_pred HHHHHhHhhh-----------------------hcc-----cccceeecccccccCcceEEEEcCCCchhhcc-------
Confidence 2222111100 000 00011223445566777777777743211000
Q ss_pred chhhHHHHhhh--CC-CCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCC-CCCCCCCCccc
Q 048084 776 EEDEDERLLEA--LG-PPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHL-PPLGKLPSLED 844 (967)
Q Consensus 776 ~~~~~~~~~~~--l~-~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~ 844 (967)
.... .. .++++..+.+.++.... . +.|....++|+.|.+..|...+.+ |....+..+..
T Consensus 736 -------~~~~~~~~~~f~~l~~~~~~~~~~~r--~-l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 736 -------WEESLIVLLCFPNLSKVSILNCHMLR--D-LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred -------cccccchhhhHHHHHHHHhhcccccc--c-cchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 0000 00 13455555555555554 4 666667888999999888766543 33444444444
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.24 E-value=3.1e-11 Score=125.12 Aligned_cols=194 Identities=22% Similarity=0.193 Sum_probs=103.5
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH---
Q 048084 179 IFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI--- 255 (967)
Q Consensus 179 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 255 (967)
|+||++++++|.+++... ..+.+.|+|+.|+|||+|++++.+... ...+ .++|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~-~~~y~~~~~~~~-~~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELK-EKGY-KVVYIDFLEESN-ESSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC-cEEEEecccchh-hhHHHHHHHH
Confidence 799999999999998643 347899999999999999999998531 1122 455555444332 2222222
Q ss_pred -------HHHhccCCC----------CCCChHHHHHHHHHHhc--cCcceEeecCCCCCC------hhhHHHHHhhhcC-
Q 048084 256 -------IEALTDSAS----------NFGEFQSLMQRIQKHVA--RKKLLLVLDDVWNEN------FYKWEQFNNCLKN- 309 (967)
Q Consensus 256 -------~~~l~~~~~----------~~~~~~~~~~~l~~~l~--~~r~LlvlDdv~~~~------~~~~~~l~~~l~~- 309 (967)
.+.+....+ ...........+.+.+. +++++||+||++... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111211110 01112233333333332 346999999996543 1222334444443
Q ss_pred --CCCCcEEEEecCChhHHhh--------hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCC
Q 048084 310 --CLHGSKILITTRKEAIARI--------MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGL 379 (967)
Q Consensus 310 --~~~gs~iliTtr~~~v~~~--------~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (967)
..+.+ +|++.....+... .+....+.+++|+.+++++++....... . .. +...+..++|+..+||+
T Consensus 152 ~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 152 LSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ---TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCC
Confidence 23334 4454444443332 2234469999999999999999875433 1 11 11234468999999999
Q ss_pred hhHHHH
Q 048084 380 PLAAKT 385 (967)
Q Consensus 380 Plai~~ 385 (967)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998865
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.20 E-value=1.9e-10 Score=124.41 Aligned_cols=280 Identities=16% Similarity=0.106 Sum_probs=145.3
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
.-.+|+||++.++.+...+..... .......+.|+|++|+|||+||+.+++... ..+ .++... .......+..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~ 95 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAA 95 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHH
Confidence 456799999999999888754221 123456788999999999999999998632 211 122211 1111112222
Q ss_pred HHHHhccCCC-CCCCh----HHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHHhhh
Q 048084 255 IIEALTDSAS-NFGEF----QSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIARIM 329 (967)
Q Consensus 255 i~~~l~~~~~-~~~~~----~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~ 329 (967)
++..+....- -.++. ....+.+...+.+.+..+|+|+..+.. .+...++ +.+-|..|++...+...+
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHH
Confidence 2222211000 00000 011111222223333333333332110 0010111 234455666654333221
Q ss_pred --CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCCCHHHHHHHHhhhh
Q 048084 330 --GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSKNTRKEWQNILESEI 407 (967)
Q Consensus 330 --~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~~~ 407 (967)
.....+.+++++.++..+++.+.+....... ..+.+..|++.|+|.|-.+..+...+ ..|........
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~~ 237 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDGV 237 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCCC
Confidence 1134689999999999999998875543222 23458899999999997655555433 12221111000
Q ss_pred hhhhhhcccchhHHHHhHhcCChhhHHHHh-hhccCCCCcccCHHHHHHHHHhcCCccccccccHHHHHHHHHH-HHHhC
Q 048084 408 WELEAVKKGLLAPLLLSYNELPSKVKHCFS-YCAVFPKDYEMWKDKLIELWMAQGFLNNKRNKEMAEIGEEYFN-VLASR 485 (967)
Q Consensus 408 ~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~-~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~-~L~~~ 485 (967)
-. ...-......+...+..|++..+..+. ....|+.+ .+..+.+.... | . ..+.++..++ .|++.
T Consensus 238 I~-~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-------~-~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 IT-KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G-------E-ERDTIEDVYEPYLIQQ 304 (328)
T ss_pred CC-HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C-------C-CcchHHHHhhHHHHHc
Confidence 00 000112233455667788888888775 66677655 46666654433 1 1 1223444555 89999
Q ss_pred CCccccC
Q 048084 486 SFFQDFG 492 (967)
Q Consensus 486 ~ll~~~~ 492 (967)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997544
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=1.6e-12 Score=141.82 Aligned_cols=120 Identities=20% Similarity=0.160 Sum_probs=67.0
Q ss_pred ccccCCCCccEEEeccCCccchh-ccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCcc-
Q 048084 560 DNVKGLRGLRSLLVESNEYSWSR-VILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIE- 637 (967)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~- 637 (967)
..+..+++|+.|.+.++...... ..++..+...+.|+.|+++.+....-......++..+..+++|++|++++|. +.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~ 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-LGP 95 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-CCh
Confidence 34556666778888777642110 1134456666777777777322210001122334556667777777777777 43
Q ss_pred ccchHHhccCC---CCEEecCCCCCCc-----ccCcccccc-ccccEEecCCC
Q 048084 638 KLPETLCELYN---LERLNVSGCRNLR-----ELPQGIGKL-RKLMYLYNDRT 681 (967)
Q Consensus 638 ~lp~~~~~l~~---L~~L~L~~~~~l~-----~lp~~l~~l-~~L~~L~l~~~ 681 (967)
..+..+..+.+ |++|++++|. +. .+...+..+ ++|+.|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 34444444444 7777777776 33 222334455 67777777777
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=2.9e-12 Score=139.80 Aligned_cols=106 Identities=21% Similarity=0.207 Sum_probs=62.0
Q ss_pred EEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccc-------cchHH
Q 048084 571 LLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEK-------LPETL 643 (967)
Q Consensus 571 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~-------lp~~~ 643 (967)
|+|..+... .. -....|..+..|++|+++.+.++. .....++..+...++|++|+++++. +.. ++..+
T Consensus 3 l~L~~~~l~-~~-~~~~~~~~l~~L~~l~l~~~~l~~--~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l 77 (319)
T cd00116 3 LSLKGELLK-TE-RATELLPKLLCLQVLRLEGNTLGE--EAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGL 77 (319)
T ss_pred cccccCccc-cc-chHHHHHHHhhccEEeecCCCCcH--HHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHH
Confidence 455555432 11 134456677778888888222211 1223455666677778888888776 442 33456
Q ss_pred hccCCCCEEecCCCCCCcccCcccccccc---ccEEecCCC
Q 048084 644 CELYNLERLNVSGCRNLRELPQGIGKLRK---LMYLYNDRT 681 (967)
Q Consensus 644 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~---L~~L~l~~~ 681 (967)
..+++|+.|++++|......+..+..+.+ |++|++++|
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC
Confidence 66778888888877733334444444444 777777776
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.13 E-value=6.9e-10 Score=119.48 Aligned_cols=278 Identities=17% Similarity=0.114 Sum_probs=142.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
.+|||+++.+++|..++..... .......+.++|++|+|||+||+.+++... ..+ ..+.......... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchh-HHHHH
Confidence 4699999999999988864322 123456688999999999999999988522 111 1222111111111 11222
Q ss_pred HHhccCCC-CCCCh----HHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHHhhh--
Q 048084 257 EALTDSAS-NFGEF----QSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIARIM-- 329 (967)
Q Consensus 257 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~-- 329 (967)
..+....- -.++. .+....+...+.+.+..+|+|+..+.. .+...++ +.+-|..||+...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~-----~~~~~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR-----SVRLDLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc-----ceeecCC---CeEEEEecCCccccCHHHHh
Confidence 22211100 00000 111222333333334444444432220 1111111 244455677764433321
Q ss_pred CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCCCHHHHHHHHhhhhhh
Q 048084 330 GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSKNTRKEWQNILESEIWE 409 (967)
Q Consensus 330 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~~~~~ 409 (967)
.....+.+++++.++..+++.+.+....... ..+.+..|++.|+|.|..+..++..+.. .....+...-.
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~----~~~al~~ia~~~~G~pR~~~~ll~~~~~------~a~~~~~~~it 218 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEI----EPEAALEIARRSRGTPRIANRLLRRVRD------FAQVRGQKIIN 218 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc----CHHHHHHHHHHhCCCcchHHHHHHHHHH------HHHHcCCCCcC
Confidence 1134679999999999999998875432211 2345778999999999776655543310 00000000000
Q ss_pred hhhhcccchhHHHHhHhcCChhhHHHHh-hhccCCCCcccCHHHHHHHHHhcCCccccccccHHHHHHHHHH-HHHhCCC
Q 048084 410 LEAVKKGLLAPLLLSYNELPSKVKHCFS-YCAVFPKDYEMWKDKLIELWMAQGFLNNKRNKEMAEIGEEYFN-VLASRSF 487 (967)
Q Consensus 410 ~~~~~~~~~~~l~~sy~~L~~~~k~~~~-~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~-~L~~~~l 487 (967)
...-......+...|..++++.+..+. ..+.+..+ .+..+.+.... |. ....++..++ .|++++|
T Consensus 219 -~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~l 285 (305)
T TIGR00635 219 -RDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIGF 285 (305)
T ss_pred -HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHcCC
Confidence 000011122245567888888877766 55666543 45554444332 11 1123555567 6999999
Q ss_pred ccccC
Q 048084 488 FQDFG 492 (967)
Q Consensus 488 l~~~~ 492 (967)
+....
T Consensus 286 i~~~~ 290 (305)
T TIGR00635 286 LQRTP 290 (305)
T ss_pred cccCC
Confidence 96433
No 34
>PF05729 NACHT: NACHT domain
Probab=99.01 E-value=2.2e-09 Score=104.43 Aligned_cols=143 Identities=21% Similarity=0.285 Sum_probs=89.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccc----CCceEEEEecCCCCHH---HHHHHHHHHhccCCCCCCChHHHHHHHH
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKY----FDERIWVCVSDPFDEF---RIAKAIIEALTDSASNFGEFQSLMQRIQ 277 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 277 (967)
+++.|+|.+|+||||+++.++.+...... +..++|+......... .+...+..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 57999999999999999998876433332 3456677665543322 33333333332211 11111 222
Q ss_pred HHh-ccCcceEeecCCCCCChh-------hHHH-HHhhhcC-CCCCcEEEEecCChhHH---hhhCCcceeecCCCChhh
Q 048084 278 KHV-ARKKLLLVLDDVWNENFY-------KWEQ-FNNCLKN-CLHGSKILITTRKEAIA---RIMGSIDIISINVLSEIE 344 (967)
Q Consensus 278 ~~l-~~~r~LlvlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~iliTtr~~~v~---~~~~~~~~~~l~~l~~~~ 344 (967)
..+ ..++++||+|++++.... .+.. +...++. ..++.+++||+|..... ........+.+++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 222 567999999999654321 1222 3344443 35689999999987663 333444589999999999
Q ss_pred HHHHHHHHh
Q 048084 345 CWSVFELLA 353 (967)
Q Consensus 345 ~~~l~~~~~ 353 (967)
..++++++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998764
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.97 E-value=1.6e-07 Score=106.93 Aligned_cols=301 Identities=12% Similarity=0.098 Sum_probs=159.8
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccc---cccC--CceEEEEecCCCCHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDV---KKYF--DERIWVCVSDPFDEF 249 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~---~~~f--~~~~wv~~~~~~~~~ 249 (967)
.|..++||++++++|...|...-. ......++.|+|++|.|||++++.|.+.... .... -.+++|.+....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 345789999999999999865432 1223467889999999999999999875321 1111 235788887777888
Q ss_pred HHHHHHHHHhccCCC-CCCChHHHHHHHHHHhc---cCcceEeecCCCCCChhhHHHHHhhhcC-CCCCcEEEE--ecCC
Q 048084 250 RIAKAIIEALTDSAS-NFGEFQSLMQRIQKHVA---RKKLLLVLDDVWNENFYKWEQFNNCLKN-CLHGSKILI--TTRK 322 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~~r~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~ili--Ttr~ 322 (967)
.++..|.+++....+ ......+....+...+. ....+||||+++......=+.+...+.. ...+++|+| +|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 899999988854332 22233344444444432 2245899999965321111223333332 123455544 3332
Q ss_pred hhH--------HhhhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCC
Q 048084 323 EAI--------ARIMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSKN 394 (967)
Q Consensus 323 ~~v--------~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~ 394 (967)
... ...++ ...+..+|.+.++-.+++..++........+..++-+|+.++...|-.=.||.++-.+.....
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEike 990 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKR 990 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcC
Confidence 111 11111 234677999999999999988764322222233333344333333444455555544443211
Q ss_pred ----CHHHHHHHHhhhhhhhhhhcccchhHHHHhHhcCChhhHHHHhhhccC-C--CCcccCHHHHHHHH--Hhc--C-C
Q 048084 395 ----TRKEWQNILESEIWELEAVKKGLLAPLLLSYNELPSKVKHCFSYCAVF-P--KDYEMWKDKLIELW--MAQ--G-F 462 (967)
Q Consensus 395 ----~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~~~~f-p--~~~~i~~~~li~~w--~a~--g-~ 462 (967)
+.+.-.++.+.. ....+.-....||.+.|-.+..+... - ....++...+.... +++ | .
T Consensus 991 gskVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~ 1060 (1164)
T PTZ00112 991 GQKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKY 1060 (1164)
T ss_pred CCccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhh
Confidence 112222211110 11123345567888877655433321 1 12235555554443 222 1 0
Q ss_pred ccccccccHHHHHHHHHHHHHhCCCccc
Q 048084 463 LNNKRNKEMAEIGEEYFNVLASRSFFQD 490 (967)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 490 (967)
+. .....+ ...+++.+|...|+|-.
T Consensus 1061 iG--v~plTq-RV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1061 IG--MCSNNE-LFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred cC--CCCcHH-HHHHHHHHHHhcCeEEe
Confidence 11 011122 45667777777777643
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.91 E-value=5.4e-08 Score=116.81 Aligned_cols=315 Identities=17% Similarity=0.168 Sum_probs=183.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEE---EecCCCC---HHHH
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWV---CVSDPFD---EFRI 251 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv---~~~~~~~---~~~~ 251 (967)
.++||+.+++.|.+.+.... .+...++.+.|..|||||+|++.|..- +.+.+...+-- ....... ....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 37899999999999997654 356679999999999999999999875 22221111111 1111111 1223
Q ss_pred HHHHHHHhc-------------------cCC--------------C----C----CCChH-----HHHHHHHHHh-ccCc
Q 048084 252 AKAIIEALT-------------------DSA--------------S----N----FGEFQ-----SLMQRIQKHV-ARKK 284 (967)
Q Consensus 252 ~~~i~~~l~-------------------~~~--------------~----~----~~~~~-----~~~~~l~~~l-~~~r 284 (967)
+++++.++. ... . . ..... .....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 333333331 000 0 0 00000 1122233333 3559
Q ss_pred ceEeecCCCCCChhhHHHHHhhhcCCCC----CcEEE--EecCCh--hHHhhhCCcceeecCCCChhhHHHHHHHHhcCC
Q 048084 285 LLLVLDDVWNENFYKWEQFNNCLKNCLH----GSKIL--ITTRKE--AIARIMGSIDIISINVLSEIECWSVFELLAFSG 356 (967)
Q Consensus 285 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~----gs~il--iTtr~~--~v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~ 356 (967)
.++|+||+++.+....+-+...+..... -..|. .|.+.. ...........|.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999998876666665555443220 11233 333322 111112335689999999999999998876432
Q ss_pred CCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccC------CCHHHHHHHHhhhhhhhhhhcccchhHHHHhHhcCCh
Q 048084 357 KSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSK------NTRKEWQNILESEIWELEAVKKGLLAPLLLSYNELPS 430 (967)
Q Consensus 357 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~ 430 (967)
.. ...+....|+++..|+|+-+..+-..+..+ .+...|+.-... ....+.. +.+...+..-.+.||.
T Consensus 236 ~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 KL-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVEFLAARLQKLPG 308 (849)
T ss_pred cc-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHHHHHHHHhcCCH
Confidence 21 223457899999999999999999998764 233444322211 1111111 2255568888999999
Q ss_pred hhHHHHhhhccCCCCcccCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhCCCccccCCCCCC---Cee-eEEecc
Q 048084 431 KVKHCFSYCAVFPKDYEMWKDKLIELWMAQGFLNNKRNKEMAEIGEEYFNVLASRSFFQDFGRGYDG---EIY-DCKMHD 506 (967)
Q Consensus 431 ~~k~~~~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~---~~~-~~~~hd 506 (967)
..|..+...|++...|. ...|...|- ......+....+.|....++...+....+ ... +--.|+
T Consensus 309 ~t~~Vl~~AA~iG~~F~--l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 309 TTREVLKAAACIGNRFD--LDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHHhCccCC--HHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 99999999999976544 555555542 13445566667777776666432111111 111 113677
Q ss_pred hHHHHHHHhh
Q 048084 507 IVHDFAQYLC 516 (967)
Q Consensus 507 ~i~~~~~~~~ 516 (967)
.+++.+-...
T Consensus 377 ~vqqaaY~~i 386 (849)
T COG3899 377 RVQQAAYNLI 386 (849)
T ss_pred HHHHHHhccC
Confidence 7777765443
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=8e-11 Score=125.28 Aligned_cols=194 Identities=26% Similarity=0.264 Sum_probs=133.3
Q ss_pred EEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCC
Q 048084 544 LMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLL 623 (967)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~ 623 (967)
+.+.+.....+|..... ..+..-...+++.|.+. . +|..+..|..|..|.|. . |.+..+|..++++.
T Consensus 55 l~Ls~rrlk~fpr~a~~--~~ltdt~~aDlsrNR~~---e-lp~~~~~f~~Le~liLy-----~--n~~r~ip~~i~~L~ 121 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAAS--YDLTDTVFADLSRNRFS---E-LPEEACAFVSLESLILY-----H--NCIRTIPEAICNLE 121 (722)
T ss_pred cccccchhhcCCCcccc--ccccchhhhhccccccc---c-CchHHHHHHHHHHHHHH-----h--ccceecchhhhhhh
Confidence 44444455555543211 45556666778888732 2 56667888888888887 5 66777888888999
Q ss_pred CCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCce
Q 048084 624 HLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKF 703 (967)
Q Consensus 624 ~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~ 703 (967)
.|.||+|+.|. +..+|..++.|+ |+.|-+++|+ ++.+|..++.+..|.+|+.+.| .+..+|..++.+.+|+.|.+.
T Consensus 122 ~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 122 ALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred HHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh
Confidence 99999999888 888888887776 8888888888 8888988888888999998888 677888888888888887766
Q ss_pred EecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCC
Q 048084 704 VVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRD 764 (967)
Q Consensus 704 ~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 764 (967)
.+.... ...++..|+ |..|+++. +.-...+..|.++++|++|.|.+|++..
T Consensus 198 Rn~l~~----lp~El~~Lp-Li~lDfSc-----Nkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 198 RNHLED----LPEELCSLP-LIRLDFSC-----NKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhh----CCHHHhCCc-eeeeeccc-----CceeecchhhhhhhhheeeeeccCCCCC
Confidence 554332 233333333 22233322 1222345566677777777777776544
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.85 E-value=1.8e-10 Score=118.42 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=76.4
Q ss_pred CCCCCCCeEEEeeeCCCCCCCCCchh-hcccccceeEecCccCCCCCC--CC-CCCCCccceeeccccCceEeCccccCC
Q 048084 788 GPPSNLKELRIDEYGGRRNVVPINWI-MSLTNLRDLSLIMWRNREHLP--PL-GKLPSLEDLKIQGMQSVKRVGNEFLGV 863 (967)
Q Consensus 788 ~~~~~L~~L~L~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~l~--~l-~~l~~L~~L~L~~c~~l~~~~~~~~~~ 863 (967)
..+..|+.|+.+++....+.. ...+ .+.++|+.|-+++|+..+..- .+ .+.+.|+.+++..|..+... .+...
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl 367 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEV-LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL 367 (483)
T ss_pred hhhhHhhhhcccCCCCCchHH-HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh
Confidence 344556666666555433221 1112 255666666666665433221 12 24666777777666544332 12222
Q ss_pred CCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcC-CCcCCCCCCCcCeEEEcCCcc
Q 048084 864 ESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKA-LPDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 864 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~ 942 (967)
. .++|.|+.|.+++|..++.-.+... ...-..+..|+.|.+.+||.++. .-..+..+++|+.+++.+|..
T Consensus 368 s--------~~C~~lr~lslshce~itD~gi~~l-~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 368 S--------RNCPRLRVLSLSHCELITDEGIRHL-SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred c--------cCCchhccCChhhhhhhhhhhhhhh-hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 1 2667777777777665544322110 00112456677777777776653 223455677777777777766
Q ss_pred hhh
Q 048084 943 LKE 945 (967)
Q Consensus 943 l~~ 945 (967)
+..
T Consensus 439 vtk 441 (483)
T KOG4341|consen 439 VTK 441 (483)
T ss_pred hhh
Confidence 543
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.4e-09 Score=112.62 Aligned_cols=140 Identities=17% Similarity=0.157 Sum_probs=86.0
Q ss_pred CCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCc
Q 048084 748 KKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMW 827 (967)
Q Consensus 748 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 827 (967)
.+++|+.|.|+.|.+. ...+...+..+|+|+.|.|..|.... ........++.|+.|+|++|
T Consensus 195 ~l~~lK~L~l~~CGls----------------~k~V~~~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLS----------------WKDVQWILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNN 256 (505)
T ss_pred hhhhhheEEeccCCCC----------------HHHHHHHHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCC
Confidence 3578999999999432 23455556678999999999986333 21233346888999999999
Q ss_pred cCCCC--CCCCCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccC
Q 048084 828 RNREH--LPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIM 905 (967)
Q Consensus 828 ~~~~~--l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l 905 (967)
.+.+. .+..+.+|.|..|.++.|. +..+- ..+..+......||+|+.|.+..+ ++.+|..-+ .+..+
T Consensus 257 ~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~-----~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~----~l~~l 325 (505)
T KOG3207|consen 257 NLIDFDQGYKVGTLPGLNQLNLSSTG-IASIA-----EPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLN----HLRTL 325 (505)
T ss_pred cccccccccccccccchhhhhccccC-cchhc-----CCCccchhhhcccccceeeecccC-ccccccccc----hhhcc
Confidence 77663 3558889999999998753 21110 011111111236777777777665 344443211 33345
Q ss_pred cccceeeeccC
Q 048084 906 PRLSSLQILRC 916 (967)
Q Consensus 906 ~~L~~L~l~~c 916 (967)
++|+.|.+..|
T Consensus 326 ~nlk~l~~~~n 336 (505)
T KOG3207|consen 326 ENLKHLRITLN 336 (505)
T ss_pred chhhhhhcccc
Confidence 66666666554
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=8e-09 Score=98.14 Aligned_cols=129 Identities=26% Similarity=0.255 Sum_probs=49.1
Q ss_pred ccCCCCccEEEeccCCccchhccchhhhc-cCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccc
Q 048084 562 VKGLRGLRSLLVESNEYSWSRVILPQLFD-KLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLP 640 (967)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp 640 (967)
+.++.+++.|+|.+|.+..+.. +. .+.+|+.|+|+ + |.+..+. .+..+++|++|++++|. |+.++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls-----~--N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~ 80 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLS-----N--NQITKLE-GLPGLPRLKTLDLSNNR-ISSIS 80 (175)
T ss_dssp ---------------------S-------TT-TT--EEE-T-----T--S--S--T-T----TT--EEE--SS----S-C
T ss_pred cccccccccccccccccccccc-----hhhhhcCCCEEECC-----C--CCCcccc-CccChhhhhhcccCCCC-CCccc
Confidence 4556678899999988443322 43 57788999998 6 6677774 57788999999999998 88887
Q ss_pred hHH-hccCCCCEEecCCCCCCcccC--ccccccccccEEecCCCccccccc----cCCCCCCCCCcCCceEec
Q 048084 641 ETL-CELYNLERLNVSGCRNLRELP--QGIGKLRKLMYLYNDRTESLRYLP----VGIEELIRLRGVTKFVVG 706 (967)
Q Consensus 641 ~~~-~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~p----~~~~~l~~L~~L~~~~~~ 706 (967)
..+ ..+++|++|++++|+ +..+- ..+..+++|+.|++.+|+... .+ ..+..+++|+.|+...+.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETT
T ss_pred cchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEcc
Confidence 655 468999999999888 65543 346778999999999885432 22 124566777777665543
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.74 E-value=1.1e-08 Score=97.06 Aligned_cols=123 Identities=28% Similarity=0.264 Sum_probs=54.3
Q ss_pred ccEEEEEEEecCCCCCCCccccccc-CCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVK-GLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~ 617 (967)
.+.+.+++.++.+..+. .+. .+.+|++|++++|.+..+. .+..++.|+.|+++ + |.+..++.
T Consensus 19 ~~~~~L~L~~n~I~~Ie-----~L~~~l~~L~~L~Ls~N~I~~l~-----~l~~L~~L~~L~L~-----~--N~I~~i~~ 81 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-----NLGATLDKLEVLDLSNNQITKLE-----GLPGLPRLKTLDLS-----N--NRISSISE 81 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-----T----TT--EEE-------S--S---S-CH
T ss_pred ccccccccccccccccc-----chhhhhcCCCEEECCCCCCcccc-----CccChhhhhhcccC-----C--CCCCcccc
Confidence 46788999999998764 344 5889999999999854332 27789999999999 7 88888876
Q ss_pred cc-ccCCCCcEEEccCCCCccccc--hHHhccCCCCEEecCCCCCCcccCc----cccccccccEEecCC
Q 048084 618 NI-EKLLHLKYLNLFCQREIEKLP--ETLCELYNLERLNVSGCRNLRELPQ----GIGKLRKLMYLYNDR 680 (967)
Q Consensus 618 ~i-~~l~~L~~L~Ls~~~~i~~lp--~~~~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~l~~ 680 (967)
.+ ..+++|+.|+|++|. |..+. ..+..+++|++|+|.+|+ +...+. .+..+|+|+.||-..
T Consensus 82 ~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred chHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 55 469999999999999 87664 347789999999999999 665553 367899999998643
No 42
>PTZ00202 tuzin; Provisional
Probab=98.73 E-value=2.7e-06 Score=89.93 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=106.0
Q ss_pred CCCCCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 170 SISSIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 170 ~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
...|.+.+.|+||++++.++...|...+. ...+++.|+|++|+|||||++.+..... + ..++++.. +..
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~e 323 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTE 323 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHH
Confidence 34566778999999999999999965432 2457999999999999999999997522 1 12333222 679
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHh-----c-cCcceEeecCCCCCChhhHHHHH---hhhcCCCCCcEEEEec
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHV-----A-RKKLLLVLDDVWNENFYKWEQFN---NCLKNCLHGSKILITT 320 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~~r~LlvlDdv~~~~~~~~~~l~---~~l~~~~~gs~iliTt 320 (967)
++++.++.+|+.+.. ....++.+.|.+.+ . +++.+||+-= .+. +++..+. -.+.....-|+|++--
T Consensus 324 ElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg--~~l~rvyne~v~la~drr~ch~v~ev 398 (550)
T PTZ00202 324 DTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKL-REG--SSLQRVYNEVVALACDRRLCHVVIEV 398 (550)
T ss_pred HHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCC--CcHHHHHHHHHHHHccchhheeeeee
Confidence 999999999997322 22234444444433 2 5566666531 111 1122221 1233334567777754
Q ss_pred CChhHHhh---hCCcceeecCCCChhhHHHHHHHHh
Q 048084 321 RKEAIARI---MGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 321 r~~~v~~~---~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
--+.+... ......|.+++++.++|.++..+..
T Consensus 399 pleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 399 PLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 43332221 1224588999999999999887653
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.72 E-value=5e-07 Score=100.89 Aligned_cols=180 Identities=17% Similarity=0.189 Sum_probs=107.6
Q ss_pred CCccccchhhHHH---HHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHH
Q 048084 176 ESEIFGREDEKND---LVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 176 ~~~~vGR~~~~~~---l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (967)
-.+|||++..+.. +..++.. .....+.|+|++|+||||+|+.+++. .... |+.++.......-+
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~i 77 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDL 77 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHH
Confidence 3468898877665 7777642 24457888999999999999999885 2222 23332211111111
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHH-hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEE--ecCChh--HH-
Q 048084 253 KAIIEALTDSASNFGEFQSLMQRIQKH-VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILI--TTRKEA--IA- 326 (967)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ili--Ttr~~~--v~- 326 (967)
+.+. ...... ..+++.++++|+++.......+.+...+.. +..++| ||.+.. +.
T Consensus 78 r~ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 REVI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccH
Confidence 2221 111111 145788999999987665555666665553 444555 344332 11
Q ss_pred hhhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHH
Q 048084 327 RIMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASL 389 (967)
Q Consensus 327 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 389 (967)
........+.+.+++.++..+++.+.+....... ..-..+..+.|++.++|.+..+..+...
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1122246889999999999999988653311100 0122445778999999999776555443
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.71 E-value=1.8e-07 Score=95.98 Aligned_cols=172 Identities=17% Similarity=0.125 Sum_probs=103.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhcc
Q 048084 182 REDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTD 261 (967)
Q Consensus 182 R~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 261 (967)
.+..++.+.+++.. .....+.|+|++|+|||+||+.+++.. .......+|++++...+ ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHH------hH------
Confidence 45577777776532 245789999999999999999998752 22233456776543211 00
Q ss_pred CCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChh-h-HHHHHhhhcCC-CCCcEEEEecCChh---------HHhhh
Q 048084 262 SASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFY-K-WEQFNNCLKNC-LHGSKILITTRKEA---------IARIM 329 (967)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~-~-~~~l~~~l~~~-~~gs~iliTtr~~~---------v~~~~ 329 (967)
.+.. ..+. +.-+||+||++..... . ...+...+... ..+..+|+||+... +...+
T Consensus 82 --------~~~~----~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------PEVL----EGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------HHHH----hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0111 1122 2348999999764322 2 33354444321 23447888888532 12222
Q ss_pred CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 330 GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 330 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
.....+++++++.++...++...+...+.. -..+..+.|++.++|+|..+..+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQ----LPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 224579999999999999998765322211 123446778888999998877765444
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.71 E-value=8e-07 Score=92.21 Aligned_cols=171 Identities=18% Similarity=0.197 Sum_probs=100.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
+.+++|-...+.++++ .+...-..+||++|+||||||+.+... ....| ..++...+-..-++++
T Consensus 29 Q~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHH
Confidence 3445555555555443 235677889999999999999999885 33333 2333222211111222
Q ss_pred HHHhccCCCCCCChHHHHHHHH-HHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEE--ecCChhHH---hhh
Q 048084 256 IEALTDSASNFGEFQSLMQRIQ-KHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILI--TTRKEAIA---RIM 329 (967)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~-~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ili--Ttr~~~v~---~~~ 329 (967)
.+.-+ ....+++.+|++|.|+.-+..+-+. ++|....|.-|+| ||-++... ...
T Consensus 93 -----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 93 -----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred -----------------HHHHHHHHhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 22221 1234789999999997765433333 3555556887777 66664311 122
Q ss_pred CCcceeecCCCChhhHHHHHHHHhcCCCCCcc--ch-hHHHHHHHHHHHcCCChhH
Q 048084 330 GSIDIISINVLSEIECWSVFELLAFSGKSMEE--RE-NLEKIGREIVGKCKGLPLA 382 (967)
Q Consensus 330 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~--~~-~~~~~~~~i~~~~~g~Pla 382 (967)
....++.+++|+.++-.+++.+.+........ .. -..+....+++.++|--.+
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 34569999999999999999884322211111 01 1234567788888886643
No 46
>PRK06893 DNA replication initiation factor; Validated
Probab=98.70 E-value=3.5e-07 Score=93.10 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=97.3
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
.+.+.|+|++|+|||+|++.+++. .......+.|+++... ..... + +.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~-----------------~----~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP-----------------A----VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH-----------------H----HHhhcc-c
Confidence 357899999999999999999986 3223345677766421 00000 1 111111 2
Q ss_pred cceEeecCCCCCC-hhhHHH-HHhhhcCC-CCCcEEE-EecCC---------hhHHhhhCCcceeecCCCChhhHHHHHH
Q 048084 284 KLLLVLDDVWNEN-FYKWEQ-FNNCLKNC-LHGSKIL-ITTRK---------EAIARIMGSIDIISINVLSEIECWSVFE 350 (967)
Q Consensus 284 r~LlvlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~il-iTtr~---------~~v~~~~~~~~~~~l~~l~~~~~~~l~~ 350 (967)
.-+||+||+|... ...|+. +...+... ..|..+| +|++. +.+...+.....+++++++.++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 4599999998642 244553 44433322 2344554 55544 3455555666789999999999999999
Q ss_pred HHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 351 LLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
+.+...+-.. -.++..-|++++.|..-.+..+-..+
T Consensus 172 ~~a~~~~l~l----~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIEL----SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8886443211 23457788889888777666555444
No 47
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.69 E-value=4.7e-08 Score=90.57 Aligned_cols=118 Identities=21% Similarity=0.218 Sum_probs=82.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccc---cCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKK---YFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKH 279 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 279 (967)
+.+.+.|+|++|+|||++++++.++..... .-..++|+.+....+...+.+.++..++.......+..++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 457899999999999999999998621110 03456799998888999999999999998766656677888888888
Q ss_pred hccCc-ceEeecCCCCC-ChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 280 VARKK-LLLVLDDVWNE-NFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 280 l~~~r-~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
+...+ .+||+|+++.. ....++.++.... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 86554 59999999765 5444555554444 556677777664
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=1.1e-08 Score=114.87 Aligned_cols=198 Identities=33% Similarity=0.313 Sum_probs=134.2
Q ss_pred EEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCC-CCcEEEccCCCCccccchHHhccCC
Q 048084 570 SLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLL-HLKYLNLFCQREIEKLPETLCELYN 648 (967)
Q Consensus 570 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~-~L~~L~Ls~~~~i~~lp~~~~~l~~ 648 (967)
.+.+..+.. .. .......+..+..|++. + +.+..+|...+.+. +|+.|++++|. +..+|..+..+++
T Consensus 97 ~l~~~~~~~---~~-~~~~~~~~~~l~~L~l~-----~--n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNRL---RS-NISELLELTNLTSLDLD-----N--NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPN 164 (394)
T ss_pred eeecccccc---cc-CchhhhcccceeEEecC-----C--cccccCccccccchhhcccccccccc-hhhhhhhhhcccc
Confidence 566666652 11 12225556788889887 6 77888888787775 89999999998 8888877889999
Q ss_pred CCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeE
Q 048084 649 LERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECW 728 (967)
Q Consensus 649 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~ 728 (967)
|+.|++++|+ +..+|...+.+++|+.|++++| .+..+|..+..+..|+.|.+..+.... .+
T Consensus 165 L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~----~~------------- 225 (394)
T COG4886 165 LKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIE----LL------------- 225 (394)
T ss_pred ccccccCCch-hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCccee----cc-------------
Confidence 9999999998 8888877778899999999988 777787766555566666655442100 01
Q ss_pred EcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCC
Q 048084 729 ICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVV 808 (967)
Q Consensus 729 i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 808 (967)
..+..+.++..|.+..+.. ...+..+..++++++|++++|.+.. +
T Consensus 226 ---------------~~~~~~~~l~~l~l~~n~~------------------~~~~~~~~~l~~l~~L~~s~n~i~~--i 270 (394)
T COG4886 226 ---------------SSLSNLKNLSGLELSNNKL------------------EDLPESIGNLSNLETLDLSNNQISS--I 270 (394)
T ss_pred ---------------hhhhhcccccccccCCcee------------------eeccchhccccccceeccccccccc--c
Confidence 1122233333344443311 1113445566778888888887776 4
Q ss_pred CCchhhcccccceeEecCccCCCCCCC
Q 048084 809 PINWIMSLTNLRDLSLIMWRNREHLPP 835 (967)
Q Consensus 809 ~~~~l~~l~~L~~L~L~~~~~~~~l~~ 835 (967)
+. +..+.+|+.|+++++.....++.
T Consensus 271 -~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 271 -SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -cc-ccccCccCEEeccCccccccchh
Confidence 22 67788888888888866655554
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.66 E-value=6.5e-07 Score=98.21 Aligned_cols=201 Identities=12% Similarity=0.053 Sum_probs=112.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCC-ceEEEEecCCCCH--HHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD-ERIWVCVSDPFDE--FRIA 252 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~--~~~~ 252 (967)
-.+++|++..++.+..++.. +..+.+.++|++|+||||+|+.+.+... ...+. ..++++++...+. ..+.
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLV 86 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhh
Confidence 35689999999999988853 2334688999999999999999887522 11221 2345544321100 0000
Q ss_pred H--HHHHHhccC-CCCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh
Q 048084 253 K--AIIEALTDS-ASNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA 324 (967)
Q Consensus 253 ~--~i~~~l~~~-~~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~ 324 (967)
. .....+... .......+.....++... .+.+-++|+||++.........+...+......+++|+|+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 0 000000000 000011111222222211 13455899999976654445556666655455567877775432
Q ss_pred -HHhhh-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHH
Q 048084 325 -IARIM-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIA 387 (967)
Q Consensus 325 -v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (967)
+...+ .....+++.+++.++..+++.+.+...+... ..+.+..+++.++|.+-.+....
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY----DDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22211 2245788999999999999988765433221 23457788899988776554433
No 50
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.3e-06 Score=88.04 Aligned_cols=201 Identities=16% Similarity=0.163 Sum_probs=130.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
+..+.+|+++++++...|...-. +..+.-+.|+|.+|.|||+.++.+++.......=..+++|++....+...++..+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 34489999999999999875543 2334449999999999999999999863222111127899999999999999999
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhc--cCcceEeecCCCCCChhhHHHHHhhhcCCCC-CcEEE--EecCChhHHhhhC
Q 048084 256 IEALTDSASNFGEFQSLMQRIQKHVA--RKKLLLVLDDVWNENFYKWEQFNNCLKNCLH-GSKIL--ITTRKEAIARIMG 330 (967)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~--~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~-gs~il--iTtr~~~v~~~~~ 330 (967)
++.++..........+....+.+.+. ++.+++|||+++......-+.+...+..... .++|+ ..+.+......+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99997555555666777777777774 5788999999965322211344444443332 34433 3444333222221
Q ss_pred C-------cceeecCCCChhhHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHcCC
Q 048084 331 S-------IDIISINVLSEIECWSVFELLAFSGK-SMEERENLEKIGREIVGKCKG 378 (967)
Q Consensus 331 ~-------~~~~~l~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g 378 (967)
. ...+..+|=+.+|-..++..++...- ....++...+++..++..-+|
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 1 22477888889999898887764321 112233444445555555554
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=7.3e-09 Score=104.46 Aligned_cols=244 Identities=20% Similarity=0.186 Sum_probs=142.5
Q ss_pred cccCCCCccEEEeccCCccc-hhccchhhhccCCcceEEEecccCcccccccccccccc-------cccCCCCcEEEccC
Q 048084 561 NVKGLRGLRSLLVESNEYSW-SRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN-------IEKLLHLKYLNLFC 632 (967)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~-------i~~l~~L~~L~Ls~ 632 (967)
.+..+..+..|+|++|.++. -.......+.+.+.|+.-+++.. |++ ....++|+. +-.+++|++||||.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftG--R~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTG--RLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcC--CcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 45677889999999998632 11124455778889999998821 222 233445543 34567899999998
Q ss_pred CCCcc-----ccchHHhccCCCCEEecCCCCCCcccC--------------ccccccccccEEecCCCcccccccc----
Q 048084 633 QREIE-----KLPETLCELYNLERLNVSGCRNLRELP--------------QGIGKLRKLMYLYNDRTESLRYLPV---- 689 (967)
Q Consensus 633 ~~~i~-----~lp~~~~~l~~L~~L~L~~~~~l~~lp--------------~~l~~l~~L~~L~l~~~~~~~~~p~---- 689 (967)
|- +. .+..-+..++.|++|.|.+|. +.... .-..+-++|+.+...+| ++...+.
T Consensus 102 NA-~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A 178 (382)
T KOG1909|consen 102 NA-FGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALA 178 (382)
T ss_pred cc-cCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHH
Confidence 86 33 233456788999999999887 43221 11234567777777777 4443331
Q ss_pred -CCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcc
Q 048084 690 -GIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEE 768 (967)
Q Consensus 690 -~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 768 (967)
.+...+.|+.+.+..++... .-.......+..+++|+.|+|..|.++..
T Consensus 179 ~~~~~~~~leevr~~qN~I~~---------------------------eG~~al~eal~~~~~LevLdl~DNtft~e--- 228 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRP---------------------------EGVTALAEALEHCPHLEVLDLRDNTFTLE--- 228 (382)
T ss_pred HHHHhccccceEEEecccccC---------------------------chhHHHHHHHHhCCcceeeecccchhhhH---
Confidence 23333344443333332221 11124455667778888888877732211
Q ss_pred cccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCch---h-hcccccceeEecCccCCCC----CC-CCCCC
Q 048084 769 QAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINW---I-MSLTNLRDLSLIMWRNREH----LP-PLGKL 839 (967)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~---l-~~l~~L~~L~L~~~~~~~~----l~-~l~~l 839 (967)
....+-..++.+++|+.|++++|....... ... + ...|+|+.|.+.+|.+... +. .+...
T Consensus 229 ----------gs~~LakaL~s~~~L~El~l~dcll~~~Ga-~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek 297 (382)
T KOG1909|consen 229 ----------GSVALAKALSSWPHLRELNLGDCLLENEGA-IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK 297 (382)
T ss_pred ----------HHHHHHHHhcccchheeecccccccccccH-HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence 112333455666778888888877665222 111 1 1567888888888754432 11 14457
Q ss_pred CCccceeecccc
Q 048084 840 PSLEDLKIQGMQ 851 (967)
Q Consensus 840 ~~L~~L~L~~c~ 851 (967)
|.|+.|+|++|.
T Consensus 298 ~dL~kLnLngN~ 309 (382)
T KOG1909|consen 298 PDLEKLNLNGNR 309 (382)
T ss_pred hhhHHhcCCccc
Confidence 788888888744
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.65 E-value=1.3e-09 Score=112.22 Aligned_cols=268 Identities=19% Similarity=0.203 Sum_probs=165.5
Q ss_pred CcceEEEecccCccccccccc-ccccccccCCCCcEEEccCCCCcccc--chHHhccCCCCEEecCCCCCCcccC-c-cc
Q 048084 593 ICLRALKLEVRGWRSCENYIK-EIPTNIEKLLHLKYLNLFCQREIEKL--PETLCELYNLERLNVSGCRNLRELP-Q-GI 667 (967)
Q Consensus 593 ~~L~~L~L~~~~~~~c~~~~~-~lp~~i~~l~~L~~L~Ls~~~~i~~l--p~~~~~l~~L~~L~L~~~~~l~~lp-~-~l 667 (967)
..|+.|.+. +|.+.-. .+-....++++++.|++.+|.+++.- -..-..+++|++|+|..|..++... . -.
T Consensus 138 g~lk~LSlr-----G~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLR-----GCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccccccccc-----ccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 357888888 6644322 23333457888888888888766632 2223478888888888887666432 1 23
Q ss_pred cccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhcc
Q 048084 668 GKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELE 747 (967)
Q Consensus 668 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~ 747 (967)
..+++|++|+++.|+.+.. .++ .....
T Consensus 213 ~gC~kL~~lNlSwc~qi~~--~gv---------------------------------------------------~~~~r 239 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISG--NGV---------------------------------------------------QALQR 239 (483)
T ss_pred HhhhhHHHhhhccCchhhc--Ccc---------------------------------------------------hHHhc
Confidence 4578888888888854332 000 01112
Q ss_pred CCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCc
Q 048084 748 KKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMW 827 (967)
Q Consensus 748 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 827 (967)
++..++.+.+.+|.. .....+...-...+-+.++++.+|...++......-..+..|+.|+.++|
T Consensus 240 G~~~l~~~~~kGC~e---------------~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~ 304 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLE---------------LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSC 304 (483)
T ss_pred cchhhhhhhhccccc---------------ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCC
Confidence 223333333334410 01112222223445566777777765552220111126889999999999
Q ss_pred cCCCCCCC---CCCCCCccceeeccccCceEeCccccCCCCCCCCccccccccccccccccccccccccccccccccccc
Q 048084 828 RNREHLPP---LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIII 904 (967)
Q Consensus 828 ~~~~~l~~---l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~ 904 (967)
...+..+. -.+.++|+.|-+++|..++..+....+ .+++.|+.+++..|.....-.+ ...-.+
T Consensus 305 t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----------rn~~~Le~l~~e~~~~~~d~tL----~sls~~ 370 (483)
T KOG4341|consen 305 TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG----------RNCPHLERLDLEECGLITDGTL----ASLSRN 370 (483)
T ss_pred CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----------cCChhhhhhcccccceehhhhH----hhhccC
Confidence 76654433 346899999999999987765543332 2789999999998864433222 112237
Q ss_pred CcccceeeeccCccCcCC-----CcCCCCCCCcCeEEEcCCcchhhhh
Q 048084 905 MPRLSSLQILRCLKLKAL-----PDHLLQKTTLQELWISGCPILKERC 947 (967)
Q Consensus 905 l~~L~~L~l~~c~~l~~l-----p~~~~~l~~L~~L~l~~c~~l~~~~ 947 (967)
+|.|+.|.+++|..++.. ...-.....|..+.+++||.+.+..
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 999999999999877754 3344456789999999999987653
No 53
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.7e-06 Score=94.69 Aligned_cols=192 Identities=17% Similarity=0.190 Sum_probs=112.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++...-...+. ..++..-....++
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~ 82 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEI 82 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHH
Confidence 356899999999999888632 2356789999999999999999887521110000 0000000000111
Q ss_pred HHHhc-----cCCCCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-h
Q 048084 256 IEALT-----DSASNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-A 324 (967)
Q Consensus 256 ~~~l~-----~~~~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~ 324 (967)
..... .........++..+ +.+.+ .+++-++|+|+++......+..+...+.......++|++|.+. .
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 00000 00000011222221 11111 2345699999998876666777877777655666677766543 3
Q ss_pred HHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHH
Q 048084 325 IARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAK 384 (967)
Q Consensus 325 v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 384 (967)
+... .+....+++.+++.++..+.+...+...+... ..+.+..|++.++|.|..+.
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 3322 22246899999999999999887664433211 13346789999999886443
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.5e-08 Score=105.00 Aligned_cols=210 Identities=17% Similarity=0.062 Sum_probs=134.7
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
.+++.+++.+...+..+.. .....|++++.|+|+.|-+..+.. .-.+...+++|+.|+|+.| .+....++
T Consensus 121 kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~N-------rl~~~~~s 190 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSN-------RLSNFISS 190 (505)
T ss_pred HhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccc-------cccCCccc
Confidence 4677778877766654421 356789999999999997533332 4566789999999999943 33322111
Q ss_pred --cccCCCCcEEEccCCCCcc--ccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccc--cCCC
Q 048084 619 --IEKLLHLKYLNLFCQREIE--KLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLP--VGIE 692 (967)
Q Consensus 619 --i~~l~~L~~L~Ls~~~~i~--~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p--~~~~ 692 (967)
-..+.+|+.|.|+.|. +. .+...+..+|+|+.|+|..|..+..-.....-+..|+.|+|++| .+...+ ..++
T Consensus 191 ~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~ 268 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVG 268 (505)
T ss_pred cchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccccc
Confidence 2357899999999998 65 34444668999999999999634332233455788999999999 444555 4478
Q ss_pred CCCCCCcCCceEecCcCCCccCc---cccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCC
Q 048084 693 ELIRLRGVTKFVVGGGYDRACSL---GSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSR 763 (967)
Q Consensus 693 ~l~~L~~L~~~~~~~~~~~~~~l---~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 763 (967)
.++.|..|++..++..+...... .....+.+|+.|.+..- +.........+..+.+|+.|.+..|.+.
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N---~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN---NIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC---ccccccccchhhccchhhhhhccccccc
Confidence 88888888888777665322222 11233444554444331 1111222334555667777777666544
No 55
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=3.3e-06 Score=96.19 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=116.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.++||.+..++.|.+++... .-.+.+.++|..|+||||+|+.+.+...-...+. . ..+..-...+.|
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~---~----~PCG~C~sCr~I 82 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT---S----QPCGVCRACREI 82 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC---C----CCCcccHHHHHH
Confidence 357899999999999998532 2356778999999999999988777421111100 0 001100011111
Q ss_pred HHH-----hccCCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh-H
Q 048084 256 IEA-----LTDSASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA-I 325 (967)
Q Consensus 256 ~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~-v 325 (967)
... +..+.......+++.+.+... ..++.-++|||+++......+..+...+.......++|+||++.. +
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 000 000000111222322222221 124456899999998877778888888776566777787777643 2
Q ss_pred Hhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh-hHHHHHHH
Q 048084 326 ARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP-LAAKTIAS 388 (967)
Q Consensus 326 ~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 388 (967)
... ......+.+.+++.++..+.+.+.+...+... ..+..+.|++.++|.. -|+..+-.
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF----EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 211 22346899999999999999988764433211 2344778999998866 45555433
No 56
>PRK04195 replication factor C large subunit; Provisional
Probab=98.58 E-value=9e-06 Score=92.76 Aligned_cols=250 Identities=16% Similarity=0.126 Sum_probs=141.9
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..-.+++|+++.++++.+|+..... ....+.+.|+|++|+||||+|+.++++. .|+ ++-++++...+.. .+.
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~ 82 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIE 82 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHH
Confidence 3445799999999999999865431 1226789999999999999999999862 122 3444444433222 233
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCCh----hhHHHHHhhhcCCCCCcEEEEecCCh-hHHh-
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENF----YKWEQFNNCLKNCLHGSKILITTRKE-AIAR- 327 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~----~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~- 327 (967)
.++........ ....++-+||+|+++.... ..+..+...+... +..||+|+.+. ....
T Consensus 83 ~~i~~~~~~~s--------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 83 RVAGEAATSGS--------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHHhhccCc--------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchh
Confidence 33322211100 0113577999999976432 3455666666532 33466666442 1111
Q ss_pred -hhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCC---CHHHHHHHH
Q 048084 328 -IMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSKN---TRKEWQNIL 403 (967)
Q Consensus 328 -~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~---~~~~w~~~l 403 (967)
.-.....+.+.+++.++....+...+...+.... .+....|++.++|....+......+.... +.+..+.+.
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~ 222 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG 222 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh
Confidence 1123457899999999999998887654332221 34578899999997766554444343321 233333222
Q ss_pred hhhhhhhhhhcccchhHHHHhHh-cCChhhHHHHhhhccCCCCcccCHHHHHHHHHhcCCccc
Q 048084 404 ESEIWELEAVKKGLLAPLLLSYN-ELPSKVKHCFSYCAVFPKDYEMWKDKLIELWMAQGFLNN 465 (967)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~sy~-~L~~~~k~~~~~~~~fp~~~~i~~~~li~~w~a~g~~~~ 465 (967)
. .....+++.++...+. .-+......+.. ..++.+ .+-.|+.+.+...
T Consensus 223 ~------~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 223 R------RDREESIFDALDAVFKARNADQALEASYD-------VDEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred c------CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCHH-HHHHHHHhccccc
Confidence 1 1122445666665554 222233322221 123333 4667999888764
No 57
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.55 E-value=2.6e-06 Score=92.64 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=110.0
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEe--cCCCCHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCV--SDPFDEFRIA 252 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~ 252 (967)
.-.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+. ..++.+ +...... ..
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~ 85 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VI 85 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HH
Confidence 3356899999999999998532 334579999999999999999987521 11121 122322 2222111 11
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hHHh-hhC
Q 048084 253 KAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AIAR-IMG 330 (967)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~-~~~ 330 (967)
.+.+..+....+ .....+-++++|+++.........+...+......+.+|+++... .+.. ...
T Consensus 86 ~~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 86 RNKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH
Confidence 111111111000 001235689999997665455566777776555566777766432 1111 112
Q ss_pred CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHH
Q 048084 331 SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKT 385 (967)
Q Consensus 331 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (967)
....+++.+++.++...++...+...+..- ..+.+..+++.++|.+.-+..
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 234789999999999999988765433221 234577889999998865433
No 58
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=2.6e-06 Score=99.01 Aligned_cols=184 Identities=14% Similarity=0.128 Sum_probs=114.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccccc-------------------CCc
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKY-------------------FDE 236 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~ 236 (967)
-.++||.+..++.|.+++... .-.....++|+.|+||||+|+.+++...-... |.-
T Consensus 15 FddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 357899999999999988632 23456689999999999999999975211111 000
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcE
Q 048084 237 RIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQK-HVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSK 315 (967)
Q Consensus 237 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ 315 (967)
++++.......+. +..++...+.. -..+++-++|||+++.........++..+.......+
T Consensus 90 viEidAas~~kVD------------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 90 LIEVDAASRTKVD------------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEEeccccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 1112111101111 11122222211 1235677999999988877778888888776555666
Q ss_pred EEEecCC-hhHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 316 ILITTRK-EAIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 316 iliTtr~-~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
+|++|.+ ..+... ......+++.+++.++..+++.+.+...+. ....+.+..|++.++|.|.-+..+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6665544 333322 223468999999999999999887643221 112345788999999998644444
No 59
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.55 E-value=3.5e-09 Score=113.02 Aligned_cols=175 Identities=23% Similarity=0.225 Sum_probs=123.6
Q ss_pred CCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccc
Q 048084 592 LICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLR 671 (967)
Q Consensus 592 l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 671 (967)
+..-...||+ . |.+..+|..++.+..|+.+.|..|. +..+|..++++..|.+|+|+.|+ +..+|..+..|+
T Consensus 74 ltdt~~aDls-----r--NR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp 144 (722)
T KOG0532|consen 74 LTDTVFADLS-----R--NRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP 144 (722)
T ss_pred ccchhhhhcc-----c--cccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc
Confidence 3444557787 6 7788999999999999999999999 99999999999999999999999 999999988777
Q ss_pred cccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCC
Q 048084 672 KLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKN 751 (967)
Q Consensus 672 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~ 751 (967)
|+.|-+++| +++.+|.+++.+..|..|+.+.+.... ....+..|..|+.|.+..- .-...+..+. .-.
T Consensus 145 -Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~s----lpsql~~l~slr~l~vrRn-----~l~~lp~El~-~Lp 212 (722)
T KOG0532|consen 145 -LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQS----LPSQLGYLTSLRDLNVRRN-----HLEDLPEELC-SLP 212 (722)
T ss_pred -ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhh----chHHhhhHHHHHHHHHhhh-----hhhhCCHHHh-CCc
Confidence 889989888 889999999988888888877766533 3344455554444333221 1111122222 224
Q ss_pred CCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCC
Q 048084 752 LFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRR 805 (967)
Q Consensus 752 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 805 (967)
|..|++++|+ ...+|-.+..+..|++|-|.+|+...
T Consensus 213 Li~lDfScNk------------------is~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 213 LIRLDFSCNK------------------ISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeeeecccCc------------------eeecchhhhhhhhheeeeeccCCCCC
Confidence 5566666662 23344455566666666666665544
No 60
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.54 E-value=1.5e-06 Score=84.23 Aligned_cols=184 Identities=20% Similarity=0.169 Sum_probs=100.2
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
.-.+|||.+..++.+.-.+..... +.+...-+.+||++|+||||||+.++++ ....| .+++...-
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~---~~~sg~~i--------- 86 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF---KITSGPAI--------- 86 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--E---EEEECCC----------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCe---Eeccchhh---------
Confidence 446799999888887655532211 2345678899999999999999999986 34343 23322111
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCC--------CC-----------CcE
Q 048084 255 IIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNC--------LH-----------GSK 315 (967)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~--------~~-----------gs~ 315 (967)
....++...+.. + +++-+|++|+++......-+.+...+.++ ++ -+-
T Consensus 87 ------------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 87 ------------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ------------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 111222222221 2 24668888999876654445555554432 11 122
Q ss_pred EEEecCChhHHhhhCC--cceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHc
Q 048084 316 ILITTRKEAIARIMGS--IDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLR 391 (967)
Q Consensus 316 iliTtr~~~v~~~~~~--~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 391 (967)
|=-|||...+...+.. .-..+++.-+.+|-.++..+.+..-.. +-..+.+.+|++++.|-|--..-+-..++
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3347776544443332 224579999999999999876543332 22345689999999999987666655554
No 61
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=3.5e-07 Score=103.06 Aligned_cols=195 Identities=14% Similarity=0.102 Sum_probs=114.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
.+++|.+...+.|..++... .-...+.++|++|+||||+|+.+++...-.+.+...+|.+.+.. .+......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 46899999999998888642 23467799999999999999888875321111222222221100 0000000000
Q ss_pred HHhccCCCCCCChHHHHHHHHHH-----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-hhHHhhh-
Q 048084 257 EALTDSASNFGEFQSLMQRIQKH-----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-EAIARIM- 329 (967)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~-----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-~~v~~~~- 329 (967)
..+.. ......+...+ +... ..+++-++|+|+++......+..+...+......+.+|+++.. ..+...+
T Consensus 88 ~el~~--~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 88 LEIDA--ASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred EEecc--cccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 00000 01111222211 2221 1245669999999877666788888888765555555555543 3332222
Q ss_pred CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHH
Q 048084 330 GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAK 384 (967)
Q Consensus 330 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 384 (967)
.....+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+--+.
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 2356899999999999999998765443221 23457889999999886543
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=3.5e-06 Score=94.98 Aligned_cols=194 Identities=14% Similarity=0.111 Sum_probs=115.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.++||.+...+.|..++... .-.+.+.++|+.|+||||+|+.+++...-.. ++.. ..+..-...+.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I 81 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAV 81 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHH
Confidence 357899999999999998632 2357889999999999999998877421100 1100 000100011111
Q ss_pred HHHhc-----cCCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hH
Q 048084 256 IEALT-----DSASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AI 325 (967)
Q Consensus 256 ~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v 325 (967)
...-. .........++..+.+... ..+++-++|+|+++.........+...+.....+.++|++|.+. .+
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 10000 0000011222222222211 13556699999998877677777888777655666777777653 22
Q ss_pred Hh-hhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHH
Q 048084 326 AR-IMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKT 385 (967)
Q Consensus 326 ~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (967)
.. .......+++.+++.++..+.+.+.+...+... ..+....|++.++|.+..+..
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA----DQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 21 123356899999999999999988765433221 234477899999998854443
No 63
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.4e-06 Score=91.82 Aligned_cols=178 Identities=19% Similarity=0.190 Sum_probs=116.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCc----cccccCCceEEEEe-cCCCCHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNG----DVKKYFDERIWVCV-SDPFDEFRI 251 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 251 (967)
.+++|.+...+.+..++... .-.+...++|+.|+||||+|+.+++.. ....|+|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35789999999999998532 245678899999999999998888731 12345665555442 22222222
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHH-h-hh
Q 048084 252 AKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIA-R-IM 329 (967)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~-~-~~ 329 (967)
.+++.+.+... -..+++-++|+|+++..+...+..+...+.....++.+|++|.+.... . ..
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222111 112456688888887777778889999998878888888888664321 1 12
Q ss_pred CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHH
Q 048084 330 GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAK 384 (967)
Q Consensus 330 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 384 (967)
.....+.+.++++++....+.+...+ .. .+.+..++..++|.|..+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND----IK----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC----CC----HHHHHHHHHHcCCCHHHHH
Confidence 22468999999999998888765321 11 2226678899999987554
No 64
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.53 E-value=1e-07 Score=94.43 Aligned_cols=49 Identities=31% Similarity=0.428 Sum_probs=33.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcc
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGD 229 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~ 229 (967)
.||||+++++++...|. .. .....+.+.|+|++|+|||+|+++++....
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 48999999999999995 22 234669999999999999999999888643
No 65
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=4.7e-07 Score=82.93 Aligned_cols=120 Identities=23% Similarity=0.253 Sum_probs=78.3
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
.+++.|.|+.|+||||++++++++.. ....++|++............ + ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccC
Confidence 36899999999999999999997622 335677887665322110000 0 223333333346
Q ss_pred cceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHHhh------hCCcceeecCCCChhhH
Q 048084 284 KLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIARI------MGSIDIISINVLSEIEC 345 (967)
Q Consensus 284 r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~------~~~~~~~~l~~l~~~~~ 345 (967)
+.++++|+++.. .+|......+.+..+..+|++|+.+...... .+....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999765 5677766666554556789999887654422 12234789999997763
No 66
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=2.3e-08 Score=98.12 Aligned_cols=128 Identities=21% Similarity=0.202 Sum_probs=67.3
Q ss_pred cCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchH
Q 048084 563 KGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPET 642 (967)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~ 642 (967)
..+..|..++|++|.+. . +..+..-.+.+|+|++| + |.+..+- ++..|++|+.||||+|. +..+-..
T Consensus 281 dTWq~LtelDLS~N~I~---~-iDESvKL~Pkir~L~lS-----~--N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gw 347 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT---Q-IDESVKLAPKLRRLILS-----Q--NRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGW 347 (490)
T ss_pred chHhhhhhccccccchh---h-hhhhhhhccceeEEecc-----c--cceeeeh-hhhhcccceEeecccch-hHhhhhh
Confidence 34455566666666522 2 23334455556666666 4 4444442 25556666666666665 5555444
Q ss_pred HhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccc--cCCCCCCCCCcCCceEec
Q 048084 643 LCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLP--VGIEELIRLRGVTKFVVG 706 (967)
Q Consensus 643 ~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~~~~~~ 706 (967)
-.+|-|.++|.|++|. ++.+ +++++|-+|..|++++| .++.+. .+|++|+.|+++.+.++.
T Consensus 348 h~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred HhhhcCEeeeehhhhh-Hhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 4455566666666655 5544 45555666666666665 333322 345555555555554443
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=1.3e-06 Score=83.09 Aligned_cols=124 Identities=19% Similarity=0.151 Sum_probs=73.4
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHh
Q 048084 180 FGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEAL 259 (967)
Q Consensus 180 vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 259 (967)
+||+..+..+...+... ..+.+.|+|++|+|||++++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888999999888532 346899999999999999999998632 222356677665433322211111000
Q ss_pred ccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCC------CCCcEEEEecCCh
Q 048084 260 TDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNC------LHGSKILITTRKE 323 (967)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~------~~gs~iliTtr~~ 323 (967)
............++.++|+||++.........+...+... ..+..||+||...
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111222456789999999854222223343333332 3567888888854
No 68
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=2.1e-08 Score=98.47 Aligned_cols=125 Identities=30% Similarity=0.327 Sum_probs=104.4
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
+.+..+.+++|.+..+. ++..=.|.+|.|++++|.+ .. ..+ +..+.+|..|||| + |.+.++-.+
T Consensus 284 q~LtelDLS~N~I~~iD----ESvKL~Pkir~L~lS~N~i---~~-v~n-La~L~~L~~LDLS-----~--N~Ls~~~Gw 347 (490)
T KOG1259|consen 284 QELTELDLSGNLITQID----ESVKLAPKLRRLILSQNRI---RT-VQN-LAELPQLQLLDLS-----G--NLLAECVGW 347 (490)
T ss_pred hhhhhccccccchhhhh----hhhhhccceeEEeccccce---ee-ehh-hhhcccceEeecc-----c--chhHhhhhh
Confidence 46778889999988776 5667789999999999984 32 222 8889999999999 6 777777666
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccC--ccccccccccEEecCCCc
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELP--QGIGKLRKLMYLYNDRTE 682 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~l~~~~ 682 (967)
-.+|-+.+.|.|++|. |+.+.. +.+|.+|..||+++|+ +..+- .++++||.|++|.+.+|+
T Consensus 348 h~KLGNIKtL~La~N~-iE~LSG-L~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNK-IETLSG-LRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred HhhhcCEeeeehhhhh-Hhhhhh-hHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 6678899999999999 988876 8999999999999998 76653 468999999999999995
No 69
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.47 E-value=3.3e-06 Score=86.39 Aligned_cols=153 Identities=15% Similarity=0.142 Sum_probs=91.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
....+.|+|++|+|||+||+.+++... ..-..++++++.... .. + .. ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~~~~~i~~~~~~------~~----~------------------~~-~~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS--YGGRNARYLDAASPL------LA----F------------------DF-DP 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEehHHhH------HH----H------------------hh-cc
Confidence 346789999999999999999988521 111245566544311 00 0 01 12
Q ss_pred CcceEeecCCCCCChhhHHHHHhhhcCC-CCCc-EEEEecCChhHHh--------hhCCcceeecCCCChhhHHHHHHHH
Q 048084 283 KKLLLVLDDVWNENFYKWEQFNNCLKNC-LHGS-KILITTRKEAIAR--------IMGSIDIISINVLSEIECWSVFELL 352 (967)
Q Consensus 283 ~r~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iliTtr~~~v~~--------~~~~~~~~~l~~l~~~~~~~l~~~~ 352 (967)
..-++|+||++......-..+...+... ..+. .+|+|++...... .+.....+++++++.++-.+++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3457999999754333333444444321 1333 4667766432211 2233468899999998877777765
Q ss_pred hcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 353 AFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
+...+. . -.++..+.+++.+.|++..+..+...+
T Consensus 170 ~~~~~v-~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGL-Q---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCC-C---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 432221 1 123457788889999999888777665
No 70
>PLN03025 replication factor C subunit; Provisional
Probab=98.47 E-value=3.2e-06 Score=91.07 Aligned_cols=184 Identities=14% Similarity=0.055 Sum_probs=108.3
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCC-ceEEEEecCCCCHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD-ERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~ 253 (967)
.-.+++|.++.++.|..++.. +..+.+.++|++|+||||+|+.+++... ...|. .++-+..+...+.. ..+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr 82 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVR 82 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHH
Confidence 335689999988888877743 2334577999999999999998887521 12222 12222222222222 222
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hHHhh-hCC
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AIARI-MGS 331 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~-~~~ 331 (967)
+.++.+...... .-.++.-++|+|+++.........+...+......+++++++... .+... ...
T Consensus 83 ~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 83 NKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 222221110000 001346699999998766555555666665444566777766542 22111 122
Q ss_pred cceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHH
Q 048084 332 IDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAA 383 (967)
Q Consensus 332 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (967)
...+++.+++.++..+.+...+...+..-. .+....|++.++|..-.+
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 357899999999999999887654432222 334778899998876443
No 71
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.46 E-value=1.9e-08 Score=101.51 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=55.0
Q ss_pred hhccCCcceEEEecccCccccccccc-----ccccccccCCCCcEEEccCCC---Cccccch-------HHhccCCCCEE
Q 048084 588 LFDKLICLRALKLEVRGWRSCENYIK-----EIPTNIEKLLHLKYLNLFCQR---EIEKLPE-------TLCELYNLERL 652 (967)
Q Consensus 588 ~~~~l~~L~~L~L~~~~~~~c~~~~~-----~lp~~i~~l~~L~~L~Ls~~~---~i~~lp~-------~~~~l~~L~~L 652 (967)
....+..+..|+|+ + |.+. .+.+.+.+.++|+.-++|+-. ....+|. .+-.+++|++|
T Consensus 25 ~~~~~~s~~~l~ls-----g--nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLS-----G--NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred HhcccCceEEEecc-----C--CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 36777888889998 4 3332 244556677788888887532 0123443 24466788888
Q ss_pred ecCCCCCCcccCcc----ccccccccEEecCCC
Q 048084 653 NVSGCRNLRELPQG----IGKLRKLMYLYNDRT 681 (967)
Q Consensus 653 ~L~~~~~l~~lp~~----l~~l~~L~~L~l~~~ 681 (967)
+||+|-.-..-+.. +.+++.|++|+|.+|
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 88888733333322 456778888888777
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=7e-06 Score=92.12 Aligned_cols=195 Identities=15% Similarity=0.111 Sum_probs=114.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCC-ceEEEEecCCCCHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD-ERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 254 (967)
-.+++|.+..+..+...+... .-.+.+.++|+.|+||||+|+.+++...-..... ...+..+....+ ...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~ 90 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CIS 90 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHH
Confidence 346899999999988877532 2346789999999999999999987521111000 000000110000 000
Q ss_pred HHHHhc-----cCCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEE-ecCChh
Q 048084 255 IIEALT-----DSASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILI-TTRKEA 324 (967)
Q Consensus 255 i~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ili-Ttr~~~ 324 (967)
+..... .+.......+++...+... +.+++-++|+|+++......+..+...+......+.+|+ ||+...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 100000 0000111223333322221 235677999999988777778888888876556666554 544444
Q ss_pred HHhhh-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHH
Q 048084 325 IARIM-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAA 383 (967)
Q Consensus 325 v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (967)
+...+ .....+++.+++.++..+.+.+.+...+... ..+....|++.++|.+.-+
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 44332 2345799999999999999998875443221 1334677999999987544
No 73
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.44 E-value=9.4e-07 Score=92.47 Aligned_cols=236 Identities=23% Similarity=0.217 Sum_probs=156.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccC-CceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF-DERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
..+-+.++|.|||||||++-++.. ++..| +.+.++......+...+.-.+...++..... -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 457899999999999999988887 34555 6777888877777777766666656543222 2334445666667
Q ss_pred cCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHHhhhCCcceeecCCCChh-hHHHHHHHHhcCCCCC-
Q 048084 282 RKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIARIMGSIDIISINVLSEI-ECWSVFELLAFSGKSM- 359 (967)
Q Consensus 282 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~~~~~~~~l~~l~~~-~~~~l~~~~~~~~~~~- 359 (967)
++|.++|+||....- ..-..+...+..+...-.|+.|+|..-.. .......+++|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 889999999983321 11111222233334445688899864332 33456778888764 7888887665433221
Q ss_pred ccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCCCHHHHHHHHhhhhhhhhh-------hcccchhHHHHhHhcCChhh
Q 048084 360 EERENLEKIGREIVGKCKGLPLAAKTIASLLRSKNTRKEWQNILESEIWELEA-------VKKGLLAPLLLSYNELPSKV 432 (967)
Q Consensus 360 ~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~-------~~~~~~~~l~~sy~~L~~~~ 432 (967)
............|.++.+|.|++|..+++..+.- ...+-...++.....+.+ -.......+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1223334567899999999999999999998765 333333333332222221 12457888999999999988
Q ss_pred HHHHhhhccCCCCcccC
Q 048084 433 KHCFSYCAVFPKDYEMW 449 (967)
Q Consensus 433 k~~~~~~~~fp~~~~i~ 449 (967)
+-.|--++.|...|..+
T Consensus 242 ~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 242 RALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHhcchhhhhhhhccc
Confidence 88999999998877654
No 74
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.6e-06 Score=93.77 Aligned_cols=198 Identities=15% Similarity=0.122 Sum_probs=114.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccccc--CCceEEEEecCCCCHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKY--FDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~ 253 (967)
-.++||.+..++.|.+++... .-.+.+.++|..|+||||+|+.+.+...-... -.... +..+..-...+
T Consensus 15 FddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~ 85 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACT 85 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHH
Confidence 357899999999999998632 24567789999999999999888774211000 00000 00000000111
Q ss_pred HHHHH-----hccCCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEE-ecCCh
Q 048084 254 AIIEA-----LTDSASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILI-TTRKE 323 (967)
Q Consensus 254 ~i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ili-Ttr~~ 323 (967)
.|... +..+.......+++.+.+... ..++.-++|||+++......+..+...+.......++|+ ||...
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 11000 000000112233333333222 135566999999998877777777777765445555555 44444
Q ss_pred hHHhhh-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 324 AIARIM-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 324 ~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
.+...+ .....+.+..++.++..+.+.+.+...+... ..+..+.|++.++|.|.....+
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~----d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH----EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 443222 2246899999999999999887764332211 1234678899999999654443
No 75
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=5.7e-06 Score=89.02 Aligned_cols=200 Identities=17% Similarity=0.151 Sum_probs=118.3
Q ss_pred CCCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc--cCCceEEEEecCCCCHH
Q 048084 172 SSIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK--YFDERIWVCVSDPFDEF 249 (967)
Q Consensus 172 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~ 249 (967)
.|.....++|.++..+.+...+.+. .....+.|+|+.|+||||+|+.+.+..--.. .+... .....+...
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCC
Confidence 3445567999999999999998633 2456799999999999999988877521100 01111 001111111
Q ss_pred HHHHHHHHH-------hccC--C-----CCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcCC
Q 048084 250 RIAKAIIEA-------LTDS--A-----SNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKNC 310 (967)
Q Consensus 250 ~~~~~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~ 310 (967)
...+.+... +... . ......++.. .+.+.+ .+++-++|+|+++..+......+...+...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 122223221 1000 0 0112234433 334433 245679999999988777777787777654
Q ss_pred CCCcEEE-EecCChhHHhhh-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 311 LHGSKIL-ITTRKEAIARIM-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 311 ~~gs~il-iTtr~~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
.....+| +|++...+.... .....+.+.+++.++..+++.+...... -..+.+..+++.++|.|.....+
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG------SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4445544 444433332222 2346899999999999999987431111 11334678999999999865544
No 76
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=7e-06 Score=93.61 Aligned_cols=195 Identities=14% Similarity=0.073 Sum_probs=112.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.++||.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+...-.... -+..+... ...+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C----~sCr~i 82 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVC----QSCTQI 82 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCccc----HHHHHH
Confidence 357999999999999998632 235678999999999999998887741111000 00000100 000000
Q ss_pred HHH-----hccCCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hH
Q 048084 256 IEA-----LTDSASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AI 325 (967)
Q Consensus 256 ~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v 325 (967)
... +..+.......+.+...+... ..+++-++|+|+++.........+...+......+++|++|.+. .+
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 000 000000111222222222211 13456799999998766555666777776544556677666543 22
Q ss_pred Hhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 326 ARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 326 ~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
... .+....+.+.+++.++..+.+.+.+...+... ..+....|++.++|.+.-+..+
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHHH
Confidence 211 22235788899999999999988765443221 2345788999999988544433
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=5.1e-06 Score=91.12 Aligned_cols=196 Identities=14% Similarity=0.037 Sum_probs=112.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.++||.+..+..|..++... .-...+.++|+.|+||||+|+.+++...-. .... ...+....+-..+....
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGI 88 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccC
Confidence 356899999999999888632 124568999999999999999998752111 1000 00111111111111110
Q ss_pred HHHhc-cCC---CCCCChHHHHHHHHHH-hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEec-CChhHHhh-
Q 048084 256 IEALT-DSA---SNFGEFQSLMQRIQKH-VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITT-RKEAIARI- 328 (967)
Q Consensus 256 ~~~l~-~~~---~~~~~~~~~~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTt-r~~~v~~~- 328 (967)
...+. ... ....+..++.+.+... ..++.-++|+|+++......+..+...+........+|++| ....+...
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 00000 000 0011122222222211 23556699999999887777888877776544455544444 43443322
Q ss_pred hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHH
Q 048084 329 MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAA 383 (967)
Q Consensus 329 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (967)
......+.+.+++.++..+.+.+.+...+.. -..+....|++.++|.+.-.
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~----~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ----YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCChHHHH
Confidence 2234579999999999999998876543321 12345788999999998543
No 78
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.3e-05 Score=90.70 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=114.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc-------------------ccCCc
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK-------------------KYFDE 236 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~ 236 (967)
-.+++|.+..++.+...+... .....+.++|+.|+||||+|+.+++...-. +.|.-
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 356899999999999888532 234668899999999999998888631100 01112
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH-hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcE
Q 048084 237 RIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKH-VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSK 315 (967)
Q Consensus 237 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ 315 (967)
++++.......+.+ ..++...+... ..+++-++|+|+++......+..+...+......+.
T Consensus 90 lieidaas~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 90 LIEIDAASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred eEEeecccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 22232211111111 12222222211 235667999999987776777888888877655665
Q ss_pred EEE-ecCChhHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChh-HHHHHHH
Q 048084 316 ILI-TTRKEAIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPL-AAKTIAS 388 (967)
Q Consensus 316 ili-Ttr~~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 388 (967)
+|+ ||....+... ......+++.+++.++..+.+.+.+...+.. -..+....|++.++|.+. |+..+-.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~----~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN----SDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 554 4443333322 2335689999999999988888765433221 123346788999999774 4444433
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.6e-05 Score=89.08 Aligned_cols=202 Identities=17% Similarity=0.138 Sum_probs=115.5
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccccc-------------------CC
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKY-------------------FD 235 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~ 235 (967)
.-.++||.+...+.|...+... .-.+.+.++|++|+||||+|+.+++....... +.
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFM 86 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCC
Confidence 3456999998888888777532 23466899999999999999988774211100 00
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCc
Q 048084 236 ERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQK-HVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGS 314 (967)
Q Consensus 236 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs 314 (967)
.++.++.+.......+ +++.+. +.. -..+++-++|+|+++.........+...+.......
T Consensus 87 dv~el~aa~~~gid~i-R~i~~~-----------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 87 DVIELDAASNRGIDEI-RKIRDA-----------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred ccEEEeCcccCCHHHH-HHHHHH-----------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 1222222211111111 111111 110 122456799999997655455566776666544444
Q ss_pred EEEEecCC-hhHHhhh-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCC-ChhHHHHHHHHHc
Q 048084 315 KILITTRK-EAIARIM-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKG-LPLAAKTIASLLR 391 (967)
Q Consensus 315 ~iliTtr~-~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~~l~ 391 (967)
.+|++|.+ ..+...+ .....+++.+++.++....+.+.+...+... ..+....|++.++| ++.|+..+-....
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44444443 3333322 2356889999999999999888764433211 13446778887765 5677777665443
Q ss_pred c---CCCHHHHHHHH
Q 048084 392 S---KNTRKEWQNIL 403 (967)
Q Consensus 392 ~---~~~~~~w~~~l 403 (967)
. .-+.+....++
T Consensus 225 ~~~~~It~e~V~~~l 239 (472)
T PRK14962 225 FSEGKITLETVHEAL 239 (472)
T ss_pred hcCCCCCHHHHHHHH
Confidence 2 12455555444
No 80
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=8.9e-06 Score=91.82 Aligned_cols=196 Identities=15% Similarity=0.123 Sum_probs=112.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.+++|++..++.+.+++... ...+.+.++|+.|+||||+|+.+++...-.. |.... .+..-...+.+
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i 82 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESI 82 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHH
Confidence 357899999999999988532 2346788999999999999988877421001 11110 11111111111
Q ss_pred HHHhcc-----CCCCCCChHHHHHHH---HHH-hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-hhH
Q 048084 256 IEALTD-----SASNFGEFQSLMQRI---QKH-VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-EAI 325 (967)
Q Consensus 256 ~~~l~~-----~~~~~~~~~~~~~~l---~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-~~v 325 (967)
...... ........+++...+ ... ..+++-++|+|+++......+..+...+......+.+|++|.. ..+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 111000 000011222222211 110 1233447999999877667777888887765555656555543 333
Q ss_pred Hhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChh-HHHHHH
Q 048084 326 ARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPL-AAKTIA 387 (967)
Q Consensus 326 ~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 387 (967)
... ......+++.+++.++....+...+...+... ..+.+..+++.++|.+. |+..+-
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I----s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI----EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 322 23356899999999999998888764432211 13347788999999765 444433
No 81
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.38 E-value=1.8e-05 Score=87.38 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=112.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc--------------------ccCC
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK--------------------KYFD 235 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~ 235 (967)
-.+++|.++.++.+.+++... .-.+.+.++|++|+||||+|+.+.+...-. .+++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 346899999999999988532 234678899999999999998877641100 0121
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcE
Q 048084 236 ERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSK 315 (967)
Q Consensus 236 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ 315 (967)
++++......... -.+++...+... -..+++-++|+|+++.........+...+......+.
T Consensus 88 -~~~~~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 -VIEIDAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEEeeccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 1223222111111 111222211100 0123456899999976655556677777765555666
Q ss_pred EEEecCChh-HHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHH
Q 048084 316 ILITTRKEA-IARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIA 387 (967)
Q Consensus 316 iliTtr~~~-v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (967)
+|++|.+.. +... ......+++.++++++..+++...+...+... ..+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 666665443 2222 22345788999999999999988765433211 13457788999999997665544
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=1.2e-05 Score=92.25 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=115.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.++||.+..++.|...+... .-...+.++|+.|+||||+|+.+++..--...+. ..++..-...+.|
T Consensus 15 f~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i 82 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREI 82 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHH
Confidence 357899999999999888632 2345678999999999999998887521111000 0011111111111
Q ss_pred HHHhc-----cCCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-hhH
Q 048084 256 IEALT-----DSASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-EAI 325 (967)
Q Consensus 256 ~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-~~v 325 (967)
...-. .+.......++..+.+... ..+++-++|+|+++.........+...+.......++|++|.+ ..+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 10000 0000011223322222211 2356679999999888777778888877765555555555544 333
Q ss_pred Hhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHH
Q 048084 326 ARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIA 387 (967)
Q Consensus 326 ~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (967)
... ......+.+.+++.++..+.+.+.+...+.. ...+....|++.++|.+..+..+.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~----~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP----FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 322 2235689999999999999998765332211 123446789999999887544443
No 83
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.36 E-value=2.1e-05 Score=80.24 Aligned_cols=203 Identities=17% Similarity=0.107 Sum_probs=126.1
Q ss_pred ccccc---hhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc----ccCCceEEEEecCCCCHHH
Q 048084 178 EIFGR---EDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK----KYFDERIWVCVSDPFDEFR 250 (967)
Q Consensus 178 ~~vGR---~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~ 250 (967)
.+||- .+.++++.+.+..+. ..+.+-+.|+|.+|+|||++++++.+..-.. ..--.|+.|......+...
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 34553 356667776666543 3566789999999999999999988642111 1112578888888899999
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhcc-CcceEeecCCCCCC------hhhHHHHHhhhcCCCCCcEEEEecCCh
Q 048084 251 IAKAIIEALTDSASNFGEFQSLMQRIQKHVAR-KKLLLVLDDVWNEN------FYKWEQFNNCLKNCLHGSKILITTRKE 323 (967)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~r~LlvlDdv~~~~------~~~~~~l~~~l~~~~~gs~iliTtr~~ 323 (967)
++..|+.+++..........+....+.+.++. +--+||+|++++.- ....-....++.+.-.-+-|.+-|+..
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 99999999998876666666666666666643 34589999997621 122223334444444455566766643
Q ss_pred hHHhhh-----CCcceeecCCCCh-hhHHHHHHHHh--cCCCCCccchhHHHHHHHHHHHcCCChhHHH
Q 048084 324 AIARIM-----GSIDIISINVLSE-IECWSVFELLA--FSGKSMEERENLEKIGREIVGKCKGLPLAAK 384 (967)
Q Consensus 324 ~v~~~~-----~~~~~~~l~~l~~-~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 384 (967)
--+-.. ....++.++.... ++...|+.... ..-.... .-...+++..|...++|+.=-+.
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHHHH
Confidence 222111 1134677777765 44555554332 1111111 12346789999999999874443
No 84
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.35 E-value=9.4e-06 Score=94.48 Aligned_cols=172 Identities=20% Similarity=0.204 Sum_probs=102.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccC---CceEEEEecCC---CCHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF---DERIWVCVSDP---FDEFR 250 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 250 (967)
++++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 4689999999998887742 234579999999999999999998763322222 12335544321 12222
Q ss_pred HHHHH---------------HHHhccCCC----------------CCCC-hHHHHHHHHHHhccCcceEeecCCCCCChh
Q 048084 251 IAKAI---------------IEALTDSAS----------------NFGE-FQSLMQRIQKHVARKKLLLVLDDVWNENFY 298 (967)
Q Consensus 251 ~~~~i---------------~~~l~~~~~----------------~~~~-~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~ 298 (967)
+...+ +...+.... .... ....+..+.+.+..+++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 111110000 0011 123566777777788888887777766556
Q ss_pred hHHHHHhhhcCCCCCcEEEE--ecCChh-HHhhh-CCcceeecCCCChhhHHHHHHHHhc
Q 048084 299 KWEQFNNCLKNCLHGSKILI--TTRKEA-IARIM-GSIDIISINVLSEIECWSVFELLAF 354 (967)
Q Consensus 299 ~~~~l~~~l~~~~~gs~ili--Ttr~~~-v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~ 354 (967)
.|+.+...+....+...+++ ||++.. +...+ .....+.+.+++.++.++++.+.+.
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 67777776666555555555 566432 11111 2234678999999999999998764
No 85
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=2.9e-06 Score=91.78 Aligned_cols=199 Identities=11% Similarity=0.045 Sum_probs=116.2
Q ss_pred CCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceE----EEEecCCCCH
Q 048084 173 SIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERI----WVCVSDPFDE 248 (967)
Q Consensus 173 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~----wv~~~~~~~~ 248 (967)
|....+++|.++..+.+.+.+... .-.....++|+.|+||+|+|..+.+..--........ -.+.. ....
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~ 88 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPD 88 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCC
Confidence 334567999999999999988643 2456799999999999999977766411000000000 00000 0000
Q ss_pred HHHHHHHHHHhcc----------CC----CCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcC
Q 048084 249 FRIAKAIIEALTD----------SA----SNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKN 309 (967)
Q Consensus 249 ~~~~~~i~~~l~~----------~~----~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~ 309 (967)
-...+.+...-.. .. .....+++. +.+.+.+ .+++.++|+|+++..+......+...+..
T Consensus 89 c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 89 HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred ChHHHHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 0111111111000 00 011223442 3333333 24567999999998887778888888876
Q ss_pred CCCCcEEEEecCChh-HHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 310 CLHGSKILITTRKEA-IARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 310 ~~~gs~iliTtr~~~-v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
...++.+|++|.+.. +... ......+.+.+++.++..+++.+.... . . .+....+++.++|.|.....+
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~-~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----L-P---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 556666777666543 3222 233568999999999999999875311 1 1 111267899999999866544
No 86
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.8e-05 Score=88.04 Aligned_cols=182 Identities=18% Similarity=0.135 Sum_probs=114.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcc------------------c-cccCCc
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGD------------------V-KKYFDE 236 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~------------------~-~~~f~~ 236 (967)
-.++||.+..++.+.+.+... .-.+.+.++|+.|+||||+|+.+++..- + .+.+.-
T Consensus 12 f~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 357899999999888887532 2345899999999999999988876210 0 011112
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEE
Q 048084 237 RIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKI 316 (967)
Q Consensus 237 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~i 316 (967)
++.++.+....+.++ +++.+.... .-+.+++-++|+|+++.........+...+......+++
T Consensus 87 v~eidaas~~~vddI-R~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 87 VIEIDAASNTSVDDI-KVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEEecccCCCHHHH-HHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 334443332222221 112211110 001345668999999877666777888888776666766
Q ss_pred EEecCC-hhHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHH
Q 048084 317 LITTRK-EAIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAA 383 (967)
Q Consensus 317 liTtr~-~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (967)
|++|.. ..+... ......+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+..+
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 665543 344332 23356899999999999999988775443222 2334678999999988643
No 87
>PF14516 AAA_35: AAA-like domain
Probab=98.34 E-value=0.00012 Score=79.05 Aligned_cols=204 Identities=12% Similarity=0.079 Sum_probs=122.8
Q ss_pred CCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC-----CC
Q 048084 173 SIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP-----FD 247 (967)
Q Consensus 173 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~ 247 (967)
+.+.+..|.|...-+++.+.+..+ ...+.|.|+-.+|||+|..++.+..+.. .| .++++++... .+
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~ 77 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSD 77 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCC
Confidence 345556789997777788887542 3589999999999999999988764332 33 4567876542 34
Q ss_pred HHHHHHHHHHHhccCCCC-----------CCChHHHHHHHHHHh---ccCcceEeecCCCCCCh------hhHHHHHhhh
Q 048084 248 EFRIAKAIIEALTDSASN-----------FGEFQSLMQRIQKHV---ARKKLLLVLDDVWNENF------YKWEQFNNCL 307 (967)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~~r~LlvlDdv~~~~~------~~~~~l~~~l 307 (967)
...+++.++..+...-.- ..........+.+.+ .+++.+|++|+++.... +-+..++...
T Consensus 78 ~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~ 157 (331)
T PF14516_consen 78 LEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWY 157 (331)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHH
Confidence 555666666555432111 112223344444433 26799999999964321 1122222222
Q ss_pred cCCC----CCcEEEEecCChhHHhh-------hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHc
Q 048084 308 KNCL----HGSKILITTRKEAIARI-------MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKC 376 (967)
Q Consensus 308 ~~~~----~gs~iliTtr~~~v~~~-------~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 376 (967)
.... ...-.++.....+.... +.....+.|++++.+|...|..++.... . ....++|...+
T Consensus 158 ~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~---~~~~~~l~~~t 229 (331)
T PF14516_consen 158 EQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----S---QEQLEQLMDWT 229 (331)
T ss_pred HhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----C---HHHHHHHHHHH
Confidence 1111 11222222222111111 1224488999999999999998764221 1 11278899999
Q ss_pred CCChhHHHHHHHHHccC
Q 048084 377 KGLPLAAKTIASLLRSK 393 (967)
Q Consensus 377 ~g~Plai~~~~~~l~~~ 393 (967)
||+|.-+..++..+..+
T Consensus 230 gGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 230 GGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999999664
No 88
>PRK08727 hypothetical protein; Validated
Probab=98.32 E-value=1.7e-05 Score=80.90 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=89.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKK 284 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r 284 (967)
..+.|+|.+|+|||+|++.+++.. ......+.|+++.+ ....+. ..+.. + .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~-l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR-----------------DALEA-L-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH-----------------HHHHH-H-hcC
Confidence 569999999999999999988752 23333567776432 111111 11111 1 234
Q ss_pred ceEeecCCCCCC-hhhHHH-HHhhhcCC-CCCcEEEEecCChh---------HHhhhCCcceeecCCCChhhHHHHHHHH
Q 048084 285 LLLVLDDVWNEN-FYKWEQ-FNNCLKNC-LHGSKILITTRKEA---------IARIMGSIDIISINVLSEIECWSVFELL 352 (967)
Q Consensus 285 ~LlvlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iliTtr~~~---------v~~~~~~~~~~~l~~l~~~~~~~l~~~~ 352 (967)
-+||+||++... ...|.. +...+... ..|..||+|++... +...+.....+++++++.++..+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 599999996432 122332 33322211 24566999998532 2223334568899999999999999987
Q ss_pred hcCCCCCccchhHHHHHHHHHHHcCCChhHH
Q 048084 353 AFSGKSMEERENLEKIGREIVGKCKGLPLAA 383 (967)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (967)
+...+-.. ..+....|++.++|-.-.+
T Consensus 175 a~~~~l~l----~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLAL----DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCCC----CHHHHHHHHHhCCCCHHHH
Confidence 65432211 2344677888887766554
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.7e-05 Score=90.90 Aligned_cols=198 Identities=13% Similarity=0.119 Sum_probs=113.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccccc--CCceEEEEecCCCCHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKY--FDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~ 253 (967)
-.++||-+..++.|.+++... .-...+.++|+.|+||||+|+.+.+..--... ..+... ..++.-...+
T Consensus 15 f~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~ 85 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACR 85 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHH
Confidence 356899999999999888632 24567899999999999999888653110000 000000 0111111111
Q ss_pred HHHHHh-----ccCCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-h
Q 048084 254 AIIEAL-----TDSASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-E 323 (967)
Q Consensus 254 ~i~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-~ 323 (967)
.|...- ..+.......++..+.+... ..++.-++|+|+++......+..+...+.......++|++|.+ .
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence 110000 00000111223333322221 1234558999999988777778888877765556566655543 3
Q ss_pred hHHh-hhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 324 AIAR-IMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 324 ~v~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
.+.. .......+++.+++.++..+.+.+.+...+... ..+....|++.++|.+.-+..+
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 233356899999999999999988765433221 1344678899999987554443
No 90
>PRK09087 hypothetical protein; Validated
Probab=98.32 E-value=1.8e-05 Score=79.90 Aligned_cols=145 Identities=18% Similarity=0.181 Sum_probs=89.4
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
.+.+.|+|++|+|||+|++.++... .+.|++.. .+..++...+ .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~---------------------~-- 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA---------------------A-- 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh---------------------h--
Confidence 4679999999999999999888752 12354332 1111111111 1
Q ss_pred cceEeecCCCCCC--hhhHHHHHhhhcCCCCCcEEEEecCC---------hhHHhhhCCcceeecCCCChhhHHHHHHHH
Q 048084 284 KLLLVLDDVWNEN--FYKWEQFNNCLKNCLHGSKILITTRK---------EAIARIMGSIDIISINVLSEIECWSVFELL 352 (967)
Q Consensus 284 r~LlvlDdv~~~~--~~~~~~l~~~l~~~~~gs~iliTtr~---------~~v~~~~~~~~~~~l~~l~~~~~~~l~~~~ 352 (967)
.-+|++||++... ...+-.+...+.. .|..+|+|++. +.+...+.....+++++++.++-.+++++.
T Consensus 88 ~~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 88 EGPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred cCeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 1278889996432 2222223322232 36679998874 233444556679999999999999999988
Q ss_pred hcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 353 AFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
+...+- .. -+++..-|++++.|..-++..+-..+
T Consensus 166 ~~~~~~-~l---~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 166 FADRQL-YV---DPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHcCC-CC---CHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 754322 11 24457778888888777766544333
No 91
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.6e-05 Score=90.02 Aligned_cols=180 Identities=13% Similarity=0.084 Sum_probs=111.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc-------------------cCCc
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK-------------------YFDE 236 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~ 236 (967)
-.++||-+..++.|..++... .-.....++|+.|+||||+|+.+++..--.. .|.-
T Consensus 15 f~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 356899999999999999632 2345678999999999999988887421111 1111
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCC
Q 048084 237 RIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLH 312 (967)
Q Consensus 237 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~ 312 (967)
++.++..... ..++..+.+... ..++.-++|+|+++.........+...+.....
T Consensus 90 ~~eidaas~~---------------------~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 90 LFEVDAASRT---------------------KVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred EEEEcccccC---------------------CHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 2222222111 222222222111 134566899999988776777778887776555
Q ss_pred CcEEEEecCCh-hHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHH
Q 048084 313 GSKILITTRKE-AIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKT 385 (967)
Q Consensus 313 gs~iliTtr~~-~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (967)
.+++|++|.+. .+... ......+++.+++.++..+.+.+.+...+... ..+....|++.++|.+.-+..
T Consensus 149 ~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~----~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF----ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred CeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHH
Confidence 66666655442 32221 22245789999999998888777654433221 123467788999998854443
No 92
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=9.4e-06 Score=89.99 Aligned_cols=201 Identities=13% Similarity=0.118 Sum_probs=113.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEE-ecCCCCHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVC-VSDPFDEFRIAKA 254 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~ 254 (967)
-.+++|.+...+.|..++... .-...+.++|+.|+||||+|+.+++...-...+....|.. ...++..-..-+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred HhhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 357899999999998888532 1345688999999999999988877421111111000110 0001111111111
Q ss_pred HHHHhcc-----CCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEec-CChh
Q 048084 255 IIEALTD-----SASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITT-RKEA 324 (967)
Q Consensus 255 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTt-r~~~ 324 (967)
+...... +.......+++.+..... ..+++-++|+|+++......+..+...+......+.+|++| +...
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1110000 000111233333322221 12456689999998776667888888887766676666555 4333
Q ss_pred HHhhh-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHH
Q 048084 325 IARIM-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKT 385 (967)
Q Consensus 325 v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (967)
+...+ .....+++.+++.++..+.+...+...+... ..+.+..|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i----~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV----DADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 33221 2235789999999999988887664332211 234578899999998854443
No 93
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.31 E-value=1.9e-05 Score=79.48 Aligned_cols=188 Identities=12% Similarity=0.139 Sum_probs=104.5
Q ss_pred cccc-hhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHH
Q 048084 179 IFGR-EDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIE 257 (967)
Q Consensus 179 ~vGR-~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 257 (967)
++|- .+..-.....+...++ .....+.|+|..|+|||.|.+.+++.......=..++|++ ..++...+..
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHH
Confidence 3464 2333344444544332 2455689999999999999999998632111112466764 4566666666
Q ss_pred HhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCCh-hhHHH-HHhhhcCC-CCCcEEEEecCCh---------hH
Q 048084 258 ALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENF-YKWEQ-FNNCLKNC-LHGSKILITTRKE---------AI 325 (967)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~-~~~~~-l~~~l~~~-~~gs~iliTtr~~---------~v 325 (967)
.+.. ...++ ++..+. .-=+|++||++.... ..|.. +...+... ..|.+||+|++.. .+
T Consensus 82 ~~~~-----~~~~~----~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 82 ALRD-----GEIEE----FKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHT-----TSHHH----HHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHc-----ccchh----hhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 6543 12222 333333 345899999975432 22332 22222211 2466899999653 23
Q ss_pred HhhhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHH
Q 048084 326 ARIMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASL 389 (967)
Q Consensus 326 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 389 (967)
...+...-.+++.+.+.++..+++.+.+...+-. --+++++-|++.+.+..-.+..+-..
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 3344556689999999999999999887544322 12345667777777666655554433
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.31 E-value=7.2e-06 Score=96.25 Aligned_cols=175 Identities=17% Similarity=0.195 Sum_probs=99.7
Q ss_pred CCccccchhhHH---HHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHH
Q 048084 176 ESEIFGREDEKN---DLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 176 ~~~~vGR~~~~~---~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (967)
-.+|+|++..+. .+...+.. .....+.++|++|+||||||+.+++. ....| +.+++.. ....+
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f---~~lna~~-~~i~d-- 92 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHF---SSLNAVL-AGVKD-- 92 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcc---eeehhhh-hhhHH--
Confidence 356899988774 45555532 24556789999999999999999985 33333 1121110 01111
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHh--ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEe--cCChh--HH
Q 048084 253 KAIIEALTDSASNFGEFQSLMQRIQKHV--ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILIT--TRKEA--IA 326 (967)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliT--tr~~~--v~ 326 (967)
..+........+ .+++.++|+||++.......+.+...+.. |+.++|+ |.+.. +.
T Consensus 93 ----------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~---g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 93 ----------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN---GTITLIGATTENPYFEVN 153 (725)
T ss_pred ----------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC---ceEEEEEecCCChHhhhh
Confidence 111112221111 24577999999987655555566655443 5555553 34321 21
Q ss_pred hh-hCCcceeecCCCChhhHHHHHHHHhcCCC---CCccchhHHHHHHHHHHHcCCChhHH
Q 048084 327 RI-MGSIDIISINVLSEIECWSVFELLAFSGK---SMEERENLEKIGREIVGKCKGLPLAA 383 (967)
Q Consensus 327 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~g~Plai 383 (967)
.. ......+.+++++.++...++.+.+.... ......-..+....|++.+.|..-.+
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 11 12245799999999999999987654100 00011112345678888888875433
No 95
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=4.4e-08 Score=96.37 Aligned_cols=81 Identities=25% Similarity=0.226 Sum_probs=48.7
Q ss_pred cceEEEecccCccccccccc--ccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCc--cccc
Q 048084 594 CLRALKLEVRGWRSCENYIK--EIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQ--GIGK 669 (967)
Q Consensus 594 ~L~~L~L~~~~~~~c~~~~~--~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~--~l~~ 669 (967)
.|++|||+ . ..++ .+..-+.++.+|+.|.|.++..-..+-..+.+-.+|+.|+|+.|..++.... -+.+
T Consensus 186 Rlq~lDLS-----~--s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLS-----N--SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhHHhhcc-----h--hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 57777887 4 3332 2223355677777777777762223445566667777777777776654322 2456
Q ss_pred cccccEEecCCC
Q 048084 670 LRKLMYLYNDRT 681 (967)
Q Consensus 670 l~~L~~L~l~~~ 681 (967)
++.|..|+++.|
T Consensus 259 cs~L~~LNlsWc 270 (419)
T KOG2120|consen 259 CSRLDELNLSWC 270 (419)
T ss_pred hhhHhhcCchHh
Confidence 667777777666
No 96
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.29 E-value=2.2e-05 Score=87.94 Aligned_cols=171 Identities=16% Similarity=0.121 Sum_probs=105.1
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.|+|..|+|||+|++.+.+.......-..++|++ ..++...+...+.... .....+++.+. +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 45689999999999999999988522111122445653 4566677766664310 11223333333 3
Q ss_pred cceEeecCCCCCCh-hh-HHHHHhhhcCC-CCCcEEEEecCCh---------hHHhhhCCcceeecCCCChhhHHHHHHH
Q 048084 284 KLLLVLDDVWNENF-YK-WEQFNNCLKNC-LHGSKILITTRKE---------AIARIMGSIDIISINVLSEIECWSVFEL 351 (967)
Q Consensus 284 r~LlvlDdv~~~~~-~~-~~~l~~~l~~~-~~gs~iliTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~~~ 351 (967)
.-+||+||++.... .. .+.+...+... ..|..||+|+... .+...+...-.+.+.+++.++..+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 45899999975431 12 23344333321 2344688887643 2223344456889999999999999998
Q ss_pred HhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 352 LAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
.+...+.. ..-..++..-|++.++|.|-.+..+...+
T Consensus 287 ~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 87543210 01224568889999999998887766444
No 97
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.6e-06 Score=101.95 Aligned_cols=105 Identities=23% Similarity=0.336 Sum_probs=55.0
Q ss_pred ccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccc-ccccccccCCCCcEEEccCCCCccccchHHhcc
Q 048084 568 LRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIK-EIPTNIEKLLHLKYLNLFCQREIEKLPETLCEL 646 (967)
Q Consensus 568 Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~-~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l 646 (967)
++.|+|++|. +...+|..+..+++|+.|+|+ + |.+. .+|..++.+++|++|+|++|.....+|..++++
T Consensus 420 v~~L~L~~n~---L~g~ip~~i~~L~~L~~L~Ls-----~--N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQG---LRGFIPNDISKLRHLQSINLS-----G--NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEECCCCC---ccccCCHHHhCCCCCCEEECC-----C--CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 4555555554 222344555556666666665 3 2232 455555566666666666665222455555566
Q ss_pred CCCCEEecCCCCCCcccCcccccc-ccccEEecCCCc
Q 048084 647 YNLERLNVSGCRNLRELPQGIGKL-RKLMYLYNDRTE 682 (967)
Q Consensus 647 ~~L~~L~L~~~~~l~~lp~~l~~l-~~L~~L~l~~~~ 682 (967)
++|++|+|++|.....+|..+..+ .++..+++.+|.
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 666666666655444555555432 344455555553
No 98
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=6.2e-07 Score=100.68 Aligned_cols=176 Identities=26% Similarity=0.276 Sum_probs=91.4
Q ss_pred cCCCCccEEEeccCCccchhccchhhhccCC-cceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccch
Q 048084 563 KGLRGLRSLLVESNEYSWSRVILPQLFDKLI-CLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPE 641 (967)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~ 641 (967)
..++.+..|.+.+|.. .. ++.....+. +|+.|+++ + +.+..+|..++.+++|+.|++++|. +..+|.
T Consensus 113 ~~~~~l~~L~l~~n~i---~~-i~~~~~~~~~nL~~L~l~-----~--N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~ 180 (394)
T COG4886 113 LELTNLTSLDLDNNNI---TD-IPPLIGLLKSNLKELDLS-----D--NKIESLPSPLRNLPNLKNLDLSFND-LSDLPK 180 (394)
T ss_pred hcccceeEEecCCccc---cc-Cccccccchhhccccccc-----c--cchhhhhhhhhccccccccccCCch-hhhhhh
Confidence 3445566666666652 22 222233342 66666666 4 5566665556666666666666666 666666
Q ss_pred HHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccC
Q 048084 642 TLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKL 721 (967)
Q Consensus 642 ~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L 721 (967)
....+++|+.|++++|. +..+|..+..+..|+.|.+++|. ....+..+..+.++..|.+..+.... ....+..+
T Consensus 181 ~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~----~~~~~~~l 254 (394)
T COG4886 181 LLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED----LPESIGNL 254 (394)
T ss_pred hhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee----ccchhccc
Confidence 55566666666666666 66666555555556666666662 33344445555555555433322211 01222333
Q ss_pred CCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecC
Q 048084 722 NLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHS 762 (967)
Q Consensus 722 ~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 762 (967)
..++.|.+.+.... . ...+....+++.|+++.+..
T Consensus 255 ~~l~~L~~s~n~i~----~--i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 255 SNLETLDLSNNQIS----S--ISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccceecccccccc----c--cccccccCccCEEeccCccc
Confidence 33333333221110 0 11155667788888887743
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.28 E-value=2.3e-05 Score=80.13 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=93.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.|+|++|+|||+|++.+++.. ...-..+.|+.+..... ...+..+.+. +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~-----~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW--------------------FVPEVLEGME-----Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh--------------------hhHHHHHHhh-----h
Confidence 3579999999999999999888752 22233566776543100 0011111121 1
Q ss_pred cceEeecCCCCCC-hhhHHH-HHhhhcCC-CCC-cEEEEecCCh---------hHHhhhCCcceeecCCCChhhHHHHHH
Q 048084 284 KLLLVLDDVWNEN-FYKWEQ-FNNCLKNC-LHG-SKILITTRKE---------AIARIMGSIDIISINVLSEIECWSVFE 350 (967)
Q Consensus 284 r~LlvlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~iliTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~~ 350 (967)
--++++||++... ...|+. +...+... ..| .++|+||+.. .+...+.+..++++.+++.++-.++++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2489999996532 134443 22333221 123 3689998864 233344556799999999999999998
Q ss_pred HHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 351 LLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
+.+...+- .. .+++..-|++++.|..-++..+-..+
T Consensus 178 ~~a~~~~~-~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRGF-EL---PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcCC-CC---CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 76643221 11 24457788888888776665555444
No 100
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.28 E-value=1.6e-05 Score=80.90 Aligned_cols=158 Identities=17% Similarity=0.174 Sum_probs=98.1
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
..+.-+.+||++|+||||||+.+........ ..||..+.......-.+.+.++... ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 4677888999999999999999998633222 5577776544333333444333211 12346
Q ss_pred cCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEE--ecCChhHH---hhhCCcceeecCCCChhhHHHHHHHHhc--
Q 048084 282 RKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILI--TTRKEAIA---RIMGSIDIISINVLSEIECWSVFELLAF-- 354 (967)
Q Consensus 282 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ili--Ttr~~~v~---~~~~~~~~~~l~~l~~~~~~~l~~~~~~-- 354 (967)
++|.+|++|.+..-+..+ =-.++|.-.+|.-++| ||.++..- ..+....++.|+.|+.++-..++.+...
T Consensus 221 krkTilFiDEiHRFNksQ---QD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQ---QDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhh---hhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 789999999996543221 2235666667887776 66665321 1234456899999999999999887432
Q ss_pred -CCCC---Cccch---hHHHHHHHHHHHcCCChh
Q 048084 355 -SGKS---MEERE---NLEKIGREIVGKCKGLPL 381 (967)
Q Consensus 355 -~~~~---~~~~~---~~~~~~~~i~~~~~g~Pl 381 (967)
.... ..+.+ -...+.+-++..|+|-..
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 11111 223466677778888654
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=3.1e-05 Score=89.07 Aligned_cols=200 Identities=14% Similarity=0.103 Sum_probs=116.1
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCC--ceEEEEecCCCCHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD--ERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~ 252 (967)
.-.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++...-..... ...+-.+... .--
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C 92 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHC 92 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHH
Confidence 3457899999999999998632 2356788999999999999999887521111000 0000001110 011
Q ss_pred HHHHHHhcc-----CCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEec-CC
Q 048084 253 KAIIEALTD-----SASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITT-RK 322 (967)
Q Consensus 253 ~~i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTt-r~ 322 (967)
+.+...... ........+++.+.+... ..+++-++|+|+++.........+...+......+.+|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 111111000 000112233322222111 12455689999998776666777888777655666666555 33
Q ss_pred hhHHhhh-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHH
Q 048084 323 EAIARIM-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIA 387 (967)
Q Consensus 323 ~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (967)
..+...+ .....+++.+++.++....+.+.+...+.... .+....|++.++|.+.-+....
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 3333222 23468999999999999999887654332221 2457788999999986554443
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.5e-05 Score=85.26 Aligned_cols=193 Identities=8% Similarity=0.013 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHHhcCCCC----CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSK----EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~----~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (967)
.+++|.+..++.|..++...... ...-.+.+.++|++|+|||++|+.+++..--... . +..++.. ..-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~~~Cg~C----~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--EPGCGEC----RAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--CCCCCCC----HHH
Confidence 35889999999999999753210 0013567889999999999999888763110000 0 0000000 000
Q ss_pred HHHHHHhcc------CCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 253 KAIIEALTD------SASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 253 ~~i~~~l~~------~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
+.+...... ........+++...+... ..+++-++|+|+++.........+...+.....+..+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 000000000 000011222322222111 1244558889999887666666677777665566666666665
Q ss_pred h-hHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 323 E-AIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 323 ~-~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
. .+... ......+.+.+++.++..+.+.+... . + .+.+..+++.++|.|.....+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 3 33322 22356899999999999988874321 1 1 233678899999999755433
No 103
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.25 E-value=3.1e-05 Score=76.65 Aligned_cols=184 Identities=18% Similarity=0.143 Sum_probs=105.0
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..-.+|||.++..+++.=.+..... +++..--|.++|++|.||||||.-+++. +...+ -+..+....-..-+.
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~----k~tsGp~leK~gDla 95 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNL----KITSGPALEKPGDLA 95 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCe----EecccccccChhhHH
Confidence 3446799999888888766654433 4566778999999999999999999986 33222 122111111111111
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCC--------CCCcE----------
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNC--------LHGSK---------- 315 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~--------~~gs~---------- 315 (967)
.++..+ .+.=++++|.++......-+.+...+.+. ++++|
T Consensus 96 aiLt~L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 96 AILTNL----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred HHHhcC----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 222111 12335566666544322222233322111 22222
Q ss_pred -EEEecCChhHHhhhCC--cceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 316 -ILITTRKEAIARIMGS--IDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 316 -iliTtr~~~v~~~~~~--~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
|=-|||.-.+...+.. .-+.+++--+.+|-.++..+.+..-.... ..+.+.+|+++..|-|.-..-+-+.+
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 2258886444332221 33677888899999999988764333222 23448899999999997555444443
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.6e-05 Score=89.10 Aligned_cols=181 Identities=15% Similarity=0.117 Sum_probs=110.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc-------------------cCCc
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK-------------------YFDE 236 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~ 236 (967)
-.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+.+...-.. .|.-
T Consensus 15 f~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 356899999999999988632 2346678999999999999988876421100 0111
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCC
Q 048084 237 RIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLH 312 (967)
Q Consensus 237 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~ 312 (967)
++++..+.. ...+++...+... ..+++-++|+|+++.........+...+.....
T Consensus 90 ~~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 90 LIEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred eeEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 122221111 1122222222111 134567999999987766667777777776555
Q ss_pred CcEEEEecCCh-hHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChh-HHHHH
Q 048084 313 GSKILITTRKE-AIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPL-AAKTI 386 (967)
Q Consensus 313 gs~iliTtr~~-~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 386 (967)
.+.+|++|.+. .+... ......+++.+++.++..+.+.+.+...+... ..+....|++.++|.+. |+..+
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~----~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF----DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 66666655443 22211 12245889999999999988887664332211 23346788999999875 44443
No 105
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.23 E-value=1.6e-06 Score=88.07 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=62.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC--CCHHHHHHHHHHHhccCCCCCCChH------HHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP--FDEFRIAKAIIEALTDSASNFGEFQ------SLMQ 274 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 274 (967)
....++|+|++|+|||||++.++++.... +|+.++|+.+... .++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999975433 8999999997766 7889999988433322222221111 1222
Q ss_pred HHHHH-hccCcceEeecCCC
Q 048084 275 RIQKH-VARKKLLLVLDDVW 293 (967)
Q Consensus 275 ~l~~~-l~~~r~LlvlDdv~ 293 (967)
..+.. -.+++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 24789999999994
No 106
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.23 E-value=4e-05 Score=75.76 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=64.9
Q ss_pred cCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hHHhhh-CCcceeecCCCChhhHHHHHHHHhcCCCCC
Q 048084 282 RKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AIARIM-GSIDIISINVLSEIECWSVFELLAFSGKSM 359 (967)
Q Consensus 282 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 359 (967)
+.+-++|+||++......++.+...+......+.+|++|++. .+...+ .....+.+.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 456689999998776667778888887766666777776653 222211 22458999999999999988775 1
Q ss_pred ccchhHHHHHHHHHHHcCCChhH
Q 048084 360 EERENLEKIGREIVGKCKGLPLA 382 (967)
Q Consensus 360 ~~~~~~~~~~~~i~~~~~g~Pla 382 (967)
.. .+.+..|++.++|.|..
T Consensus 169 i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC----HHHHHHHHHHcCCCccc
Confidence 11 34588999999999863
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=98.22 E-value=2.9e-05 Score=79.20 Aligned_cols=156 Identities=16% Similarity=0.196 Sum_probs=94.0
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.|+|..|+|||.|++.+++.. ...-..++|++..+ +... ... +.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 3678999999999999999988752 22224567776432 2111 011 22222222
Q ss_pred cceEeecCCCCCC-hhhHHH-HHhhhcCC-CCCcEEEEecCChh---------HHhhhCCcceeecCCCChhhHHHHHHH
Q 048084 284 KLLLVLDDVWNEN-FYKWEQ-FNNCLKNC-LHGSKILITTRKEA---------IARIMGSIDIISINVLSEIECWSVFEL 351 (967)
Q Consensus 284 r~LlvlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iliTtr~~~---------v~~~~~~~~~~~l~~l~~~~~~~l~~~ 351 (967)
=+||+||++... ...|.. +...+... ..|..+|+|++... +...+.....+++++++.++..++++.
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 278899996431 234443 44444321 24667899887532 122233446789999999999999986
Q ss_pred HhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 352 LAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
++...+- ..+ .++..-|++++.|..-.+..+-..|
T Consensus 178 ka~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL-HLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6543321 111 3567788888888776666555444
No 108
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.21 E-value=2.2e-05 Score=86.41 Aligned_cols=181 Identities=17% Similarity=0.163 Sum_probs=100.5
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF 246 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 246 (967)
....++.|+++.+++|.+.+..+-.. .-..++.+.|+|++|+|||++|+.+++. ....| +.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~--- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVV--- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecc---
Confidence 34457999999999999887532110 0123566999999999999999999986 32232 2221
Q ss_pred CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCC-----------ChhhHHHHHhhh---cC--
Q 048084 247 DEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNE-----------NFYKWEQFNNCL---KN-- 309 (967)
Q Consensus 247 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~-----------~~~~~~~l~~~l---~~-- 309 (967)
...+..... .........+.+.. ...+.+|++|+++.. +......+...+ ..
T Consensus 189 -~~~l~~~~~----------g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 189 -GSELVRKYI----------GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred -hHHHHHHhh----------hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 111111110 00111112222222 345789999998642 111112232332 21
Q ss_pred CCCCcEEEEecCChhHH-hhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 310 CLHGSKILITTRKEAIA-RIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 310 ~~~gs~iliTtr~~~v~-~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
...+..||.||...... ..+ .....+.++..+.++..++|..++.+.... ...+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 12456788887754221 111 124578999999999999999876543221 1112 456777776653
No 109
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=3.7e-05 Score=81.46 Aligned_cols=214 Identities=14% Similarity=0.109 Sum_probs=127.7
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..+...+||+.+++.+.+++...-. ....+-+.|.|.+|.|||.+...++.+......=-.++++.+..-....+++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 4566799999999999999865432 34567899999999999999999998733211112558888887678888999
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhcc--CcceEeecCCCCCChhhHHHHHhhhcCC-CCCcEEEEecCChh------
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVAR--KKLLLVLDDVWNENFYKWEQFNNCLKNC-LHGSKILITTRKEA------ 324 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~r~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iliTtr~~~------ 324 (967)
.|...+...........+..+.+.++... ..+|+|+|.++......-..+...+.+. .+++++|+.---..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 99888733222222224445555555533 3689999998543222222333333322 35666554322111
Q ss_pred -HHhhhC----CcceeecCCCChhhHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHcCCChhHHHHHHHH
Q 048084 325 -IARIMG----SIDIISINVLSEIECWSVFELLAFSGKSM-EERENLEKIGREIVGKCKGLPLAAKTIASL 389 (967)
Q Consensus 325 -v~~~~~----~~~~~~l~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 389 (967)
+..... ....+..+|-+.++-.+++..+....... ..+...+-.|++++...|-+=-|+.+.-+.
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 111111 13467789999999999999886443322 112233333444444444444555444433
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=6.9e-05 Score=85.29 Aligned_cols=198 Identities=12% Similarity=0.109 Sum_probs=114.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.+++|.+..++.|...+... .-...+.++|+.|+||||+|+.+++..--...... ..++.-...+.+
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i 82 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKV 82 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHH
Confidence 356899988888888888532 13467889999999999999888875211110000 001111111111
Q ss_pred HHHhcc-----CCCCCCChHHHHHHHHHH-----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-hh
Q 048084 256 IEALTD-----SASNFGEFQSLMQRIQKH-----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-EA 324 (967)
Q Consensus 256 ~~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-~~ 324 (967)
...... .......++++. .+.+. ..+++-++|+|+++.........+...+........+|++|.. ..
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred hcCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 110000 000001122221 12221 2355679999999887767777788877654445556655544 33
Q ss_pred HHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh-hHHHHHHHHH
Q 048084 325 IARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP-LAAKTIASLL 390 (967)
Q Consensus 325 v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 390 (967)
+... ......+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+ .|+..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3322 22345889999999999999987665433211 2345778899999965 6777666544
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=7.3e-05 Score=86.43 Aligned_cols=196 Identities=15% Similarity=0.133 Sum_probs=109.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.+++|.+..++.+..++... .-.+...++|+.|+||||+|+.+++..--....+ .+-.+.... .....-
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C~---~~~~~~ 86 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQECI---ENVNNS 86 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHHH---HhhcCC
Confidence 356899999999999998632 2356778999999999999988876411000000 000000000 000000
Q ss_pred HHHhccCCCCCCChHH---HHHHHHHH-hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEE-EecCChhHHhh-h
Q 048084 256 IEALTDSASNFGEFQS---LMQRIQKH-VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKIL-ITTRKEAIARI-M 329 (967)
Q Consensus 256 ~~~l~~~~~~~~~~~~---~~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~il-iTtr~~~v~~~-~ 329 (967)
..-+..........++ +.+.+... ..+++-++|+|+++......+..+...+......+.+| +|++...+... .
T Consensus 87 ~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 87 LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHH
Confidence 0000000000011222 22222111 13556699999998776677777877776554455545 45444444322 2
Q ss_pred CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHH
Q 048084 330 GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKT 385 (967)
Q Consensus 330 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (967)
.....+++.+++.++..+.+...+...+... ..+.+..|++.++|.+.-+..
T Consensus 167 SRcq~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 167 SRVQRFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred hhceeEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 3356899999999999988887654332211 123477899999997754333
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2.7e-05 Score=90.65 Aligned_cols=197 Identities=14% Similarity=0.126 Sum_probs=115.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.++||.+..++.|..++... .-...+.++|+.|+||||+|+.+++...-.... . ....++.....+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~-~-----~~~~c~~c~~c~~i 83 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTND-P-----KGRPCGTCEMCRAI 83 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCC-C-----CCCCCccCHHHHHH
Confidence 357899999999998888632 234667899999999999999888642100000 0 00111112222222
Q ss_pred HHHhccC-----CCCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-hh
Q 048084 256 IEALTDS-----ASNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-EA 324 (967)
Q Consensus 256 ~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-~~ 324 (967)
......+ .......+++.+.+ +.+ .+++-++|+|+++.......+.+...+......+.+|+++.+ ..
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii-~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREII-ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHH-HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 2211110 00112222222222 211 245669999999876666677777777765556666666543 23
Q ss_pred HHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHH
Q 048084 325 IARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIAS 388 (967)
Q Consensus 325 v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 388 (967)
+... ......+.+.+++.++....+...+...+... ..+.+..|++.++|.+..+.....
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3221 22345788999999999988887765433211 134577899999999865554443
No 113
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=9.4e-05 Score=85.24 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=111.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEE-ecCCCCHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVC-VSDPFDEFRIAKA 254 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~ 254 (967)
-.++||.+..++.|...+... .-...+.++|+.|+||||+|+.+++...-....+...|.. ....+..-...+.
T Consensus 15 f~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 356899999999999888532 2346688999999999999988876421111110001110 0011111111111
Q ss_pred HHHHhcc-----CCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEec-CChh
Q 048084 255 IIEALTD-----SASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITT-RKEA 324 (967)
Q Consensus 255 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTt-r~~~ 324 (967)
+...-.. +.......+++...+... ..+++-++|+|+++.........+...+......+.+|++| +...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 1110000 000111233333332222 23456689999998776666777888887755566555544 4333
Q ss_pred HHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChh
Q 048084 325 IARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPL 381 (967)
Q Consensus 325 v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 381 (967)
+... ......+++.+++.++....+.+.+...+... ..+.+..|++.++|..-
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMR 223 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHH
Confidence 3322 23456899999999998888887654332211 13347789999999665
No 114
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.00012 Score=83.82 Aligned_cols=199 Identities=12% Similarity=0.080 Sum_probs=115.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.++||.+..++.|..++... .-.....++|+.|+||||+|+.+++...-....+ +-.++.. ...+.+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i 79 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVAL 79 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHh
Confidence 357899999999999998632 2345678999999999999988887411000000 0001100 001111
Q ss_pred HHH-------hccCCCCCCChHHH---HHHHHHH-hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEec-CCh
Q 048084 256 IEA-------LTDSASNFGEFQSL---MQRIQKH-VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITT-RKE 323 (967)
Q Consensus 256 ~~~-------l~~~~~~~~~~~~~---~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTt-r~~ 323 (967)
... +..+.......++. ...+... ..+++-++|+|+++.........+...+........+|++| ...
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000 00000001112222 2222111 13456699999998877777788888887765566655554 434
Q ss_pred hHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChh-HHHHHHHHH
Q 048084 324 AIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPL-AAKTIASLL 390 (967)
Q Consensus 324 ~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~l 390 (967)
.+... ......+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+. |+..+-..+
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i----~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV----DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33322 23356899999999999988887665433211 12346778899999874 444444433
No 115
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=0.0001 Score=81.57 Aligned_cols=183 Identities=15% Similarity=0.120 Sum_probs=107.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc------ccCCce-EEEEecCCCCH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK------KYFDER-IWVCVSDPFDE 248 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~------~~f~~~-~wv~~~~~~~~ 248 (967)
-.+++|.+...+.+.+.+... .-.+.+.++|++|+|||++|+.+.+...-. ..|... +.+......+.
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV 90 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH
Confidence 356899999999999998532 245689999999999999998887752110 112111 11111111111
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecC-ChhHHh
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTR-KEAIAR 327 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr-~~~v~~ 327 (967)
. -.+++++++... -..+++-++|+|+++......+..+...+......+.+|+++. ...+..
T Consensus 91 ~-~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 D-DIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred H-HHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 1 111222211100 0123455899999976555556677766655444555555553 322222
Q ss_pred h-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHH
Q 048084 328 I-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAK 384 (967)
Q Consensus 328 ~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 384 (967)
. ......++..++++++....+...+...+... ..+.++.+++.++|.+-.+.
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i----~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF----EDDALHIIAQKADGALRDAL 207 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhCCCCHHHHH
Confidence 1 22345789999999999998888765433211 13457788889998765433
No 116
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=7.9e-05 Score=88.81 Aligned_cols=191 Identities=10% Similarity=0.063 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
.++||.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+...-....... .+..+ ...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHH
Confidence 46899999999999998632 234668899999999999998887752110100000 00000 0000000
Q ss_pred HH-------hccCCCCCCChHHHHHHHHH----HhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-hh
Q 048084 257 EA-------LTDSASNFGEFQSLMQRIQK----HVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-EA 324 (967)
Q Consensus 257 ~~-------l~~~~~~~~~~~~~~~~l~~----~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-~~ 324 (967)
.. +..+......++++.+.... -..+++-++|||+++......+..|...+......+.+|++|.+ ..
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 00000001122222221111 12355668999999988878888888888876666666655543 33
Q ss_pred HHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHH
Q 048084 325 IARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAA 383 (967)
Q Consensus 325 v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (967)
+... ......|++..++.++..+++.+.+...+... ..+....|++.++|.+..+
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i----d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV----EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 4332 23356899999999999988887654332211 1234677899999988433
No 117
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=0.00013 Score=82.04 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=113.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc--c----------------CC-c
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK--Y----------------FD-E 236 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~--~----------------f~-~ 236 (967)
-.+++|-+...+.+...+... .-.++..++|+.|+||||+|+.+++..--.. . +. -
T Consensus 13 fdeiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 356899999999999888532 2456778999999999999987776411000 0 10 1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCC
Q 048084 237 RIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLH 312 (967)
Q Consensus 237 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~ 312 (967)
++.+...... ..+++...+... ..+++-++|+|+++.........+...+.....
T Consensus 88 v~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 1122111111 122332222221 124566899999988877777778888876556
Q ss_pred CcEEEEecCCh-hHHh-hhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHH
Q 048084 313 GSKILITTRKE-AIAR-IMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIA 387 (967)
Q Consensus 313 gs~iliTtr~~-~v~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (967)
.+.+|++|.+. .+.. .......+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+.-+..+.
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHH
Confidence 66767666553 2221 122356899999999999999887765433221 23457889999999985554443
No 118
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=9e-07 Score=87.31 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=55.9
Q ss_pred CCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCcc
Q 048084 749 KKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWR 828 (967)
Q Consensus 749 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 828 (967)
++++..+-+..|++... ....+..++|.+.-|+|+.+++..... .+.+..|+.|..|.++.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~----------------s~ek~se~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTE----------------SSEKGSEPFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cccchheeeecCcccch----------------hhcccCCCCCcchhhhhcccccccHHH-HHHHcCCchhheeeccCCc
Confidence 46777777777754321 223455667778888888887765333 4566789999999999998
Q ss_pred CCCCCCC-------CCCCCCccceee
Q 048084 829 NREHLPP-------LGKLPSLEDLKI 847 (967)
Q Consensus 829 ~~~~l~~-------l~~l~~L~~L~L 847 (967)
+.+.+.. ++.|++++.|+=
T Consensus 261 l~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 261 LSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred ccccccCCcceEEEEeeccceEEecC
Confidence 7775543 456777777654
No 119
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.00014 Score=81.92 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=109.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccc--c-----------------ccCCce
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDV--K-----------------KYFDER 237 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~--~-----------------~~f~~~ 237 (967)
.+++|.+...+.+..++... .-.+...++|+.|+||||+|+.++....- . +.|.-+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 46899999999999998532 23456778999999999999888764110 0 001111
Q ss_pred EEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH-hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEE
Q 048084 238 IWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKH-VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKI 316 (967)
Q Consensus 238 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~i 316 (967)
+++..+....+. +...+...+... ..+++-++|+|+++.........+...+........+
T Consensus 91 ~eidaas~~gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 222211111111 011111111110 1345679999999876666667777777765555555
Q ss_pred EEec-CChhHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHH
Q 048084 317 LITT-RKEAIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIA 387 (967)
Q Consensus 317 liTt-r~~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (967)
|++| +...+... ......+.+.+++.++....+...+...+... ..+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 43333322 22345889999999999988888765433211 23446778889999876554444
No 120
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=2.6e-06 Score=66.13 Aligned_cols=56 Identities=29% Similarity=0.504 Sum_probs=30.4
Q ss_pred CCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccC-ccccccccccEEecCCC
Q 048084 624 HLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRT 681 (967)
Q Consensus 624 ~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~ 681 (967)
+|++|++++|. +..+|. .+.++++|++|++++|. ++.+| ..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555 555553 44555555555555555 44443 23555666666666555
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=0.00013 Score=81.91 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=107.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc---------------------ccC
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK---------------------KYF 234 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---------------------~~f 234 (967)
-.+++|.+..++.+.+++... .-...+.++|+.|+||||+|+.+++...-. .++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 357899999999999988532 234678899999999999998887641100 011
Q ss_pred CceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhccCcceEeecCCCCCChhhHHHHHhhhcCCCCC
Q 048084 235 DERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQK-HVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHG 313 (967)
Q Consensus 235 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~g 313 (967)
+ ++++.........+ ..++.+.+.. -..+++-++|+|+++.........+...+......
T Consensus 91 d-~~~i~g~~~~gid~------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 91 D-VLEIDGASHRGIED------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred c-eEEeeccccCCHHH------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 1 11111111111111 1111111111 01255678999999766555566677777765556
Q ss_pred cEEEEecCC-hhHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhH
Q 048084 314 SKILITTRK-EAIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLA 382 (967)
Q Consensus 314 s~iliTtr~-~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 382 (967)
+.+|++|.. ..+... ......+++.++++++....+...+...+... ..+.+..|++.++|.+.-
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRD 218 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHH
Confidence 666666643 222221 22345899999999999988887654332211 234577899999997743
No 122
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=7.5e-07 Score=100.00 Aligned_cols=56 Identities=21% Similarity=0.160 Sum_probs=32.7
Q ss_pred CCCCCeEEEeeeCCCCCCCCCchhhccc--ccceeEecCccCCCCCCCCCCCCCccceeecc
Q 048084 790 PSNLKELRIDEYGGRRNVVPINWIMSLT--NLRDLSLIMWRNREHLPPLGKLPSLEDLKIQG 849 (967)
Q Consensus 790 ~~~L~~L~L~~~~~~~~~~~~~~l~~l~--~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 849 (967)
+..+..+++..|.+.. + ..+..+. +|+.+++++|........+..++++..|++.+
T Consensus 207 ~~~l~~~~l~~n~i~~--~--~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 207 LKKLVLLSLLDNKISK--L--EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred HHHHHHhhccccccee--c--cCcccchhHHHHHHhcccCccccccccccccccccccchhh
Confidence 3344444666666554 2 2222333 38889998886554324456677777777776
No 123
>CHL00181 cbbX CbbX; Provisional
Probab=98.08 E-value=0.00026 Score=74.30 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=75.9
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.++|++|+|||++|+.+++.....+.-...-|+.++ ..++... ..+. ........+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l~~~----~~g~-----~~~~~~~~l~~a---~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDLVGQ----YIGH-----TAPKTKEVLKKA---M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHHHHH----Hhcc-----chHHHHHHHHHc---c
Confidence 3458899999999999999997742111111111244444 2222221 1111 111222223322 2
Q ss_pred cceEeecCCCCC---------ChhhHHHHHhhhcCCCCCcEEEEecCChhHHhhh--------CCcceeecCCCChhhHH
Q 048084 284 KLLLVLDDVWNE---------NFYKWEQFNNCLKNCLHGSKILITTRKEAIARIM--------GSIDIISINVLSEIECW 346 (967)
Q Consensus 284 r~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~--------~~~~~~~l~~l~~~~~~ 346 (967)
.-+|++|++... ..+....+...+.......+||+++......... .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 359999999642 1222334555555545566777777644332211 12447999999999999
Q ss_pred HHHHHHhcCC
Q 048084 347 SVFELLAFSG 356 (967)
Q Consensus 347 ~l~~~~~~~~ 356 (967)
+++...+...
T Consensus 203 ~I~~~~l~~~ 212 (287)
T CHL00181 203 QIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHh
Confidence 9998876543
No 124
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.07 E-value=7.5e-06 Score=86.54 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=67.6
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC--CHHHHHHHHHHHhccC
Q 048084 185 EKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF--DEFRIAKAIIEALTDS 262 (967)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~ 262 (967)
.--++++.+..- +..+..+|+|++|+||||||+.+++..... +|+.++||.+.+.. .+.++++.+...+-..
T Consensus 155 ~~~rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s 228 (416)
T PRK09376 155 LSTRIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS 228 (416)
T ss_pred cceeeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE
Confidence 334566666533 245788999999999999999999974433 89999999998876 6777777776322222
Q ss_pred CCCCCChHH------HHHHHHHH-hccCcceEeecCCC
Q 048084 263 ASNFGEFQS------LMQRIQKH-VARKKLLLVLDDVW 293 (967)
Q Consensus 263 ~~~~~~~~~------~~~~l~~~-l~~~r~LlvlDdv~ 293 (967)
..+.....+ ..+.-+.. -.+++.+|++|++.
T Consensus 229 t~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 229 TFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 222221111 11111222 25789999999994
No 125
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=3.8e-07 Score=102.38 Aligned_cols=82 Identities=33% Similarity=0.453 Sum_probs=45.6
Q ss_pred hccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCcccc
Q 048084 589 FDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIG 668 (967)
Q Consensus 589 ~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~ 668 (967)
+..+++|..|++. + |.+..+...+..+++|++|+|++|. |+.+.. +..++.|+.|++.+|. +..+ .++.
T Consensus 91 l~~~~~l~~l~l~-----~--n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~-~~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLY-----D--NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDI-SGLE 159 (414)
T ss_pred cccccceeeeecc-----c--cchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhc-cCCc
Confidence 4555556666665 4 4455554335556666666666665 555544 5555556666666665 4444 2444
Q ss_pred ccccccEEecCCC
Q 048084 669 KLRKLMYLYNDRT 681 (967)
Q Consensus 669 ~l~~L~~L~l~~~ 681 (967)
.+++|+.+++++|
T Consensus 160 ~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 160 SLKSLKLLDLSYN 172 (414)
T ss_pred cchhhhcccCCcc
Confidence 4566666666665
No 126
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=4.7e-06 Score=64.68 Aligned_cols=57 Identities=30% Similarity=0.477 Sum_probs=32.5
Q ss_pred cceEEEecccCcccccccccccc-cccccCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCC
Q 048084 594 CLRALKLEVRGWRSCENYIKEIP-TNIEKLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCR 658 (967)
Q Consensus 594 ~L~~L~L~~~~~~~c~~~~~~lp-~~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~ 658 (967)
+|++|+++ + +.+..+| ..+.++++|++|++++|. +..+|. .|.++++|++|++++|+
T Consensus 2 ~L~~L~l~-----~--n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLS-----N--NKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEET-----S--STESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECC-----C--CCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45556665 4 4455554 344556666666666665 555553 45566666666666654
No 127
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.3e-07 Score=93.16 Aligned_cols=107 Identities=21% Similarity=0.159 Sum_probs=70.9
Q ss_pred CCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccc-ccccccccCCCCcEEEccCCCCccccc--hH
Q 048084 566 RGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIK-EIPTNIEKLLHLKYLNLFCQREIEKLP--ET 642 (967)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~-~lp~~i~~l~~L~~L~Ls~~~~i~~lp--~~ 642 (967)
+.|+.|+|+...+. ...+...+..|.+|+.|.|. + +.+. .+-..+.+-.+|+.|+|+.|..+++.. -.
T Consensus 185 sRlq~lDLS~s~it--~stl~~iLs~C~kLk~lSlE-----g--~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 185 SRLQHLDLSNSVIT--VSTLHGILSQCSKLKNLSLE-----G--LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhhHHhhcchhhee--HHHHHHHHHHHHhhhhcccc-----c--cccCcHHHHHHhccccceeeccccccccchhHHHHH
Confidence 46888899887642 12256668889999999998 4 3332 234556777889999999988777544 34
Q ss_pred HhccCCCCEEecCCCCCCcccCcc-ccc-cccccEEecCCC
Q 048084 643 LCELYNLERLNVSGCRNLRELPQG-IGK-LRKLMYLYNDRT 681 (967)
Q Consensus 643 ~~~l~~L~~L~L~~~~~l~~lp~~-l~~-l~~L~~L~l~~~ 681 (967)
+.+|+.|..|+|+.|...+..-.. +.+ -++|..|+++++
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 678999999999998733322111 111 245666666665
No 128
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.05 E-value=0.00015 Score=71.72 Aligned_cols=126 Identities=18% Similarity=0.246 Sum_probs=73.7
Q ss_pred CCCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHH
Q 048084 172 SSIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRI 251 (967)
Q Consensus 172 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 251 (967)
.++.-..++|-+++.+.|++-...--. .....-+.++|..|.|||++++.+.+....++ .--|.+..
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k------- 88 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK------- 88 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH-------
Confidence 344556799999888888765432221 22446688899999999999999887522222 11222221
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCC-ChhhHHHHHhhhcCC---CCCcEEEE-ecCChh
Q 048084 252 AKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNE-NFYKWEQFNNCLKNC---LHGSKILI-TTRKEA 324 (967)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~---~~gs~ili-Ttr~~~ 324 (967)
.+..++.++...++. ...||+|++||+.-+ ....+..++..+..+ .+.-.+|. ||..++
T Consensus 89 ------------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 89 ------------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ------------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 111233344444432 346999999998532 234567777777643 23333444 554444
No 129
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00019 Score=83.34 Aligned_cols=177 Identities=16% Similarity=0.146 Sum_probs=111.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcc---------------------ccccCC
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGD---------------------VKKYFD 235 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~---------------------~~~~f~ 235 (967)
.+++|.+...+.|..++... .-.+.+.++|+.|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 46899999999999998632 2456788999999999999977776411 001222
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCC
Q 048084 236 ERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCL 311 (967)
Q Consensus 236 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~ 311 (967)
+..++...... .+++...+... ..+++-++|+|+++......+..+...+....
T Consensus 92 -~~~ld~~~~~~---------------------vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 -IHELDAASNNS---------------------VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred -eEEecccccCC---------------------HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 12222221111 22222222111 12345688999998877677888888887765
Q ss_pred CCcEEEEec-CChhHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHH
Q 048084 312 HGSKILITT-RKEAIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAK 384 (967)
Q Consensus 312 ~gs~iliTt-r~~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 384 (967)
..+.+|++| +...+... ......+++.+++.++....+.+.+...+... ..+.+..|++.++|..--+.
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i----~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA----EPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 666665544 44444332 23356899999999999999887664433211 12347789999999775443
No 130
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.03 E-value=0.00011 Score=76.84 Aligned_cols=162 Identities=13% Similarity=0.065 Sum_probs=82.9
Q ss_pred ccccchhhHHHHHHHHhcC---------CCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 178 EIFGREDEKNDLVNRLICE---------GSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~---------~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
.++|.+...++|.+..... .-...+....+.++|++|+||||+|+.+++.....+......++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788877776665443211 111123456788999999999999999887421111111112333221
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC--------hhhHHHHHhhhcCCCCCcEEEEec
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN--------FYKWEQFNNCLKNCLHGSKILITT 320 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iliTt 320 (967)
.++.... . ..........+.+. ..-+|++|+++... .+....+...+........+|+++
T Consensus 83 ~~l~~~~---~------g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVGEY---I------GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhhhh---c------cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111110 0 01111222222222 23589999996521 122333444444433334555565
Q ss_pred CChhHHh------hh-CC-cceeecCCCChhhHHHHHHHHhcC
Q 048084 321 RKEAIAR------IM-GS-IDIISINVLSEIECWSVFELLAFS 355 (967)
Q Consensus 321 r~~~v~~------~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~ 355 (967)
...+... .+ .. ...+.+++++.++..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 4433211 11 11 346889999999999999887643
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.02 E-value=7e-05 Score=81.11 Aligned_cols=151 Identities=14% Similarity=0.138 Sum_probs=89.3
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..-.+++|.++..+.+..++... ....++.++|++|+|||++|+.+++.. .. .+.+++.+. .... ..+
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~~-~i~ 85 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRID-FVR 85 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccHH-HHH
Confidence 34467899999999999988632 245788889999999999999998752 11 234454443 1211 111
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCC-ChhhHHHHHhhhcCCCCCcEEEEecCChh-HHhh-hC
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNE-NFYKWEQFNNCLKNCLHGSKILITTRKEA-IARI-MG 330 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iliTtr~~~-v~~~-~~ 330 (967)
..+..+... . .+.+.+-++|+|+++.. .......+...+.....++++|+||.... +... ..
T Consensus 86 ~~l~~~~~~-------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 86 NRLTRFAST-------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHHHHHHHh-------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 111111000 0 01134568999999765 22333445555665556778888887532 1111 12
Q ss_pred CcceeecCCCChhhHHHHHHH
Q 048084 331 SIDIISINVLSEIECWSVFEL 351 (967)
Q Consensus 331 ~~~~~~l~~l~~~~~~~l~~~ 351 (967)
....+.++..+.++..+++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 234677777778777766553
No 132
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.02 E-value=5.9e-05 Score=83.23 Aligned_cols=180 Identities=16% Similarity=0.164 Sum_probs=98.1
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF 246 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 246 (967)
....++.|+++.+++|.+.+..+-.. .-..++.|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh--
Confidence 34457899999999999876432110 1134567999999999999999999985 2222 333221
Q ss_pred CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCC-----------ChhhHHHHHhhhc---CC-
Q 048084 247 DEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNE-----------NFYKWEQFNNCLK---NC- 310 (967)
Q Consensus 247 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~-----------~~~~~~~l~~~l~---~~- 310 (967)
.++... .. .+.......+-... ...+.+|++|+++.. +......+..++. ..
T Consensus 199 --~~l~~~----~~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 --SELVQK----FI------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred --HHHhHh----hc------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111111 10 01112222222222 345789999999642 1111222333332 11
Q ss_pred -CCCcEEEEecCChhHH-hhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCC
Q 048084 311 -LHGSKILITTRKEAIA-RIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGL 379 (967)
Q Consensus 311 -~~gs~iliTtr~~~v~-~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (967)
..+..||.||...... ..+ .....+.+++.+.++..++|+.+..+.... ...+ ...+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCC----HHHHHHHcCCC
Confidence 2355677777654321 111 123578999999999999999876543211 1122 34556666553
No 133
>PLN03150 hypothetical protein; Provisional
Probab=98.01 E-value=6.9e-06 Score=96.58 Aligned_cols=93 Identities=25% Similarity=0.340 Sum_probs=75.3
Q ss_pred cceEEEecccCcccccccc-cccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCcccccccc
Q 048084 594 CLRALKLEVRGWRSCENYI-KEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRK 672 (967)
Q Consensus 594 ~L~~L~L~~~~~~~c~~~~-~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 672 (967)
.++.|+|+ + +.+ ..+|..++++++|++|+|++|.....+|..+..+++|+.|+|++|.....+|..+++|++
T Consensus 419 ~v~~L~L~-----~--n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLD-----N--QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECC-----C--CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 47788887 5 333 367888999999999999999833478888999999999999999855688888999999
Q ss_pred ccEEecCCCccccccccCCCC
Q 048084 673 LMYLYNDRTESLRYLPVGIEE 693 (967)
Q Consensus 673 L~~L~l~~~~~~~~~p~~~~~ 693 (967)
|++|++++|.....+|..++.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCEEECcCCcccccCChHHhh
Confidence 999999998666677876654
No 134
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00049 Score=67.71 Aligned_cols=182 Identities=19% Similarity=0.214 Sum_probs=110.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEe-cCCCCHHHHHHHHHHHhccCCCCC--CChHHHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCV-SDPFDEFRIAKAIIEALTDSASNF--GEFQSLMQRIQKH 279 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~ 279 (967)
+.+++.++|.-|.|||.+++..... ..+ +.++=|.+ ....+...+...++..+..+.... ...++..+.+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 5569999999999999999944432 111 11222333 334567788888888887632211 1122333333333
Q ss_pred h-ccCc-ceEeecCCCCCChhhHHHHHhhhcCCCCCc---EEEEecCC--------hhHHhhhCCcce-eecCCCChhhH
Q 048084 280 V-ARKK-LLLVLDDVWNENFYKWEQFNNCLKNCLHGS---KILITTRK--------EAIARIMGSIDI-ISINVLSEIEC 345 (967)
Q Consensus 280 l-~~~r-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs---~iliTtr~--------~~v~~~~~~~~~-~~l~~l~~~~~ 345 (967)
. +++| ..+++|++++...+..+.++-+......++ +|+..-.. ......-..... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 4666 899999998877777777766544322222 23332221 111111111234 89999999999
Q ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHH
Q 048084 346 WSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASL 389 (967)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 389 (967)
..+++.+..+..... +--..+....|.+...|.|.+|..++..
T Consensus 206 ~~yl~~~Le~a~~~~-~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGLPE-PLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCCCc-ccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999998876654322 1122345778999999999999988754
No 135
>PRK06620 hypothetical protein; Validated
Probab=98.00 E-value=0.00028 Score=70.67 Aligned_cols=139 Identities=14% Similarity=0.022 Sum_probs=81.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKK 284 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r 284 (967)
+.+.|+|++|+|||+|++.+++... ..++. ..... + ... ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-------~~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-------AYIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-------CEEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6799999999999999998877521 12221 00000 0 011 123
Q ss_pred ceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh-------HHhhhCCcceeecCCCChhhHHHHHHHHhcCCC
Q 048084 285 LLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA-------IARIMGSIDIISINVLSEIECWSVFELLAFSGK 357 (967)
Q Consensus 285 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~-------v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~ 357 (967)
-++++||++.......-.+...+. ..|..+|+|++... ....+...-.+++++++.++..+++.+.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 578899996432111222222222 24668999988532 223344455899999999998888887764321
Q ss_pred CCccchhHHHHHHHHHHHcCCChhHHHHHH
Q 048084 358 SMEERENLEKIGREIVGKCKGLPLAAKTIA 387 (967)
Q Consensus 358 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (967)
- .. .+++.+-|++++.|.--.+.-+-
T Consensus 165 l-~l---~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 165 V-TI---SRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred C-CC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 1 11 13456777777777655544433
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00033 Score=81.41 Aligned_cols=198 Identities=14% Similarity=0.124 Sum_probs=114.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.+++..--. ..+... ...+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHh
Confidence 568999999999999886421 33578899999999999999988752111 111000 01111112222222
Q ss_pred HHhcc-----CCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-hhHH
Q 048084 257 EALTD-----SASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-EAIA 326 (967)
Q Consensus 257 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-~~v~ 326 (967)
..... ........+++.+.+... ..+++-++|+|+++......+..+...+......+.+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11111 011112233333332221 1245568999999877666777788887765455555554443 3332
Q ss_pred hh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHH
Q 048084 327 RI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIAS 388 (967)
Q Consensus 327 ~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 388 (967)
.. ......+++.+++.++....+.+.+...+... ..+.+..|++.++|.+..+..+..
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i----s~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI----EPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 22345788899999998888877654322211 123477899999998865544433
No 137
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.98 E-value=0.00054 Score=71.03 Aligned_cols=167 Identities=16% Similarity=0.195 Sum_probs=105.3
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
..+.|.+|+.++..+...+...+ ..-+..|.|+|..|.|||.+.+++.+.. . -..+|+++-+.++..-++.+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHH
Confidence 35678899999999988875332 1245677999999999999999999964 1 13589999999999999999
Q ss_pred HHHHhccCCCCC--C-----ChHHHHHHHHH--Hhc--cCcceEeecCCCCCC---hh---hHHHHHhhhcCCCCCcEEE
Q 048084 255 IIEALTDSASNF--G-----EFQSLMQRIQK--HVA--RKKLLLVLDDVWNEN---FY---KWEQFNNCLKNCLHGSKIL 317 (967)
Q Consensus 255 i~~~l~~~~~~~--~-----~~~~~~~~l~~--~l~--~~r~LlvlDdv~~~~---~~---~~~~l~~~l~~~~~gs~il 317 (967)
|+......+.+. . .....+..+.+ ... ++.++||+||++... .. .+-.+...++. + .-+|
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~-~i~i 152 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE--P-TIVI 152 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--C-ceEE
Confidence 999985222221 1 11223333333 222 358999999995431 11 11112222222 2 3344
Q ss_pred EecCChhHHhh---hCCcc--eeecCCCChhhHHHHHHHH
Q 048084 318 ITTRKEAIARI---MGSID--IISINVLSEIECWSVFELL 352 (967)
Q Consensus 318 iTtr~~~v~~~---~~~~~--~~~l~~l~~~~~~~l~~~~ 352 (967)
+++-....... ++... ++..+.-+.+|..+++.+.
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 44443222221 34433 5667888999999988653
No 138
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.97 E-value=0.00025 Score=79.46 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=94.1
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccC--CceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYF--DERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
...+.|+|.+|+|||+|++.+++.. .... ..++|+++ .++...+...+... ..+.. .+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEF----KEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHH----HHHHH
Confidence 4578999999999999999999863 2222 24566643 34444555554321 22222 22232
Q ss_pred cCcceEeecCCCCCChh-hH-HHHHhhhcCC-CCCcEEEEecCCh-h--------HHhhhCCcceeecCCCChhhHHHHH
Q 048084 282 RKKLLLVLDDVWNENFY-KW-EQFNNCLKNC-LHGSKILITTRKE-A--------IARIMGSIDIISINVLSEIECWSVF 349 (967)
Q Consensus 282 ~~r~LlvlDdv~~~~~~-~~-~~l~~~l~~~-~~gs~iliTtr~~-~--------v~~~~~~~~~~~l~~l~~~~~~~l~ 349 (967)
+ .-+||+||++..... .+ +.+...+... ..+..+|+|+... . +...+.....+.+++.+.++..+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 348999999753211 11 2233322211 1345688877642 1 1122233457899999999999999
Q ss_pred HHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 350 ELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
.+.+....... ..++...|++.+.|..-.+.-+
T Consensus 278 ~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 278 QKKAEEEGLEL----PDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHcCCCC----CHHHHHHHHHhcCCCHHHHHHH
Confidence 98875432211 2455778888888877654443
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00037 Score=79.97 Aligned_cols=195 Identities=12% Similarity=0.057 Sum_probs=113.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.+++|-+..++.+..++... .-.+...++|+.|+||||+|+.+++..--...... ..+....+- +++
T Consensus 15 f~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i 82 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSI 82 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHH
Confidence 357899999999999998632 24567889999999999999988875211110000 001110000 111
Q ss_pred HHHhcc-----CCCCCCChHHHHHHHHH----HhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-hhH
Q 048084 256 IEALTD-----SASNFGEFQSLMQRIQK----HVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-EAI 325 (967)
Q Consensus 256 ~~~l~~-----~~~~~~~~~~~~~~l~~----~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-~~v 325 (967)
...-.. ........++..+.... -..+++-++|+|+++......+..+...+......+.+|++|.. ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 000000 00001122333222211 12355668999999887766777788887765566666665543 333
Q ss_pred Hhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 326 ARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 326 ~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
... ......+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+..+...
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 322 22345789999999999988887764433211 2344777899999988544433
No 140
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.96 E-value=7.1e-05 Score=90.45 Aligned_cols=155 Identities=16% Similarity=0.205 Sum_probs=85.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc----cCCceEE-EEecCCCCHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK----YFDERIW-VCVSDPFDEFRI 251 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~w-v~~~~~~~~~~~ 251 (967)
..++||+.++.++++.|.... ..-+.++|++|+|||++|+.+++...... ..+..+| +..+.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------ 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------ 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh------
Confidence 468999999999999986432 23466999999999999988887521111 1122222 322210
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHh--ccCcceEeecCCCCCC-------hhhHH-HHHhhhcCCCCCcEEEEecC
Q 048084 252 AKAIIEALTDSASNFGEFQSLMQRIQKHV--ARKKLLLVLDDVWNEN-------FYKWE-QFNNCLKNCLHGSKILITTR 321 (967)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~r~LlvlDdv~~~~-------~~~~~-~l~~~l~~~~~gs~iliTtr 321 (967)
........++++..+.+-..+ .+++.+|++|+++... ..+.. .+...+..+ .-++|-||.
T Consensus 255 --------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT 324 (852)
T TIGR03345 255 --------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATT 324 (852)
T ss_pred --------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecC
Confidence 000001112222222222222 2468999999986531 11111 233333331 235555555
Q ss_pred ChhHHhh-------hCCcceeecCCCChhhHHHHHHHHh
Q 048084 322 KEAIARI-------MGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 322 ~~~v~~~-------~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
..+.... ......+.+++++.+++.++++...
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 4332111 1224589999999999999976443
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.94 E-value=0.00033 Score=73.65 Aligned_cols=135 Identities=15% Similarity=0.120 Sum_probs=74.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKK 284 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r 284 (967)
.-+.++|++|+|||++|+.+++.....+.....-|+.++. .++ ...+.+. ........+.+. ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~-----~~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGH-----TAPKTKEILKRA---MG 122 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhccc-----chHHHHHHHHHc---cC
Confidence 3688999999999999977766421111111112444332 122 2222111 112222223322 34
Q ss_pred ceEeecCCCCC---------ChhhHHHHHhhhcCCCCCcEEEEecCChhHHhhhC--------CcceeecCCCChhhHHH
Q 048084 285 LLLVLDDVWNE---------NFYKWEQFNNCLKNCLHGSKILITTRKEAIARIMG--------SIDIISINVLSEIECWS 347 (967)
Q Consensus 285 ~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~~--------~~~~~~l~~l~~~~~~~ 347 (967)
-+|++|++... ....+..+...+.....+.+||+++.......... ....+.+++++.+|..+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 68999999632 12233455666665555667777765443222111 13478999999999999
Q ss_pred HHHHHhcC
Q 048084 348 VFELLAFS 355 (967)
Q Consensus 348 l~~~~~~~ 355 (967)
++...+..
T Consensus 203 I~~~~l~~ 210 (284)
T TIGR02880 203 IAGLMLKE 210 (284)
T ss_pred HHHHHHHH
Confidence 99887643
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00044 Score=80.16 Aligned_cols=196 Identities=12% Similarity=0.117 Sum_probs=109.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-.+++|.+...+.|...+... .-.+...++|+.|+||||+|+.+++..--....+. .++..-.....+
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i 82 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEI 82 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHH
Confidence 357899999999999988532 23466789999999999999888775211110000 000000000011
Q ss_pred HHHhcc-----CCCCCCChHH---HHHHHHHH-hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEec-CChhH
Q 048084 256 IEALTD-----SASNFGEFQS---LMQRIQKH-VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITT-RKEAI 325 (967)
Q Consensus 256 ~~~l~~-----~~~~~~~~~~---~~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTt-r~~~v 325 (967)
...-.. +.......++ +...+... ..+++-++|+|+++.........+...+......+.+|++| ....+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 000000 0000011122 22211111 12445689999998776666777888777655566565544 44444
Q ss_pred Hhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh-hHHHHHH
Q 048084 326 ARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP-LAAKTIA 387 (967)
Q Consensus 326 ~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~ 387 (967)
... ......+++.+++.++....+...+...+... ..+.+..|++.++|.. .|+..+-
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 432 22345788999999998888877654333211 1334678899999866 4544443
No 143
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.94 E-value=4.3e-05 Score=82.94 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=77.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
.++++.++.++.+...|.. .+.+.++|++|+|||++|+.++........|+.+.||.+....+..+++...
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 4578889999999999963 2468889999999999999998864444567888899998877766654322
Q ss_pred HHhccCCCCCC-ChHHHHHHHHHHhc--cCcceEeecCCCCCChhh-HHHHHhhhc
Q 048084 257 EALTDSASNFG-EFQSLMQRIQKHVA--RKKLLLVLDDVWNENFYK-WEQFNNCLK 308 (967)
Q Consensus 257 ~~l~~~~~~~~-~~~~~~~~l~~~l~--~~r~LlvlDdv~~~~~~~-~~~l~~~l~ 308 (967)
........ ...-..+.+.+... .+++++|+|++...+.+. +..+...+.
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 11111100 00112233333322 468999999997765443 344444444
No 144
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.1e-05 Score=56.97 Aligned_cols=38 Identities=37% Similarity=0.541 Sum_probs=23.3
Q ss_pred CCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCccc
Q 048084 624 HLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLREL 663 (967)
Q Consensus 624 ~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~l 663 (967)
+|++|++++|. |+.+|..+.+|++|++|++++|+ ++.+
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 56666666666 66666666666666666666665 5444
No 145
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=0.0004 Score=77.80 Aligned_cols=182 Identities=13% Similarity=0.061 Sum_probs=103.3
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCC-ceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD-ERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
...+.|+|.+|+|||+|++.+++... +.++. .++|++. .++..++...+... ..++ +.+....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHh
Confidence 45699999999999999999998622 22222 4667753 45556665555321 2222 2223333
Q ss_pred CcceEeecCCCCCC-hhhH-HHHHhhhcC-CCCCcEEEEecC-ChhH--------HhhhCCcceeecCCCChhhHHHHHH
Q 048084 283 KKLLLVLDDVWNEN-FYKW-EQFNNCLKN-CLHGSKILITTR-KEAI--------ARIMGSIDIISINVLSEIECWSVFE 350 (967)
Q Consensus 283 ~r~LlvlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~iliTtr-~~~v--------~~~~~~~~~~~l~~l~~~~~~~l~~ 350 (967)
+.-+|++||++... ...+ +.+...+.. ...|..||+||. .+.- ...+...-.+.+++.+.+.-.++++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 46689999997431 1111 122222211 113446888875 3221 1123345588999999999999999
Q ss_pred HHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH------ccC-CCHHHHHHHHhh
Q 048084 351 LLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL------RSK-NTRKEWQNILES 405 (967)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~~-~~~~~w~~~l~~ 405 (967)
+.+...... . -.++...|++.+.|.--.+.-+-..+ .++ -+....++++..
T Consensus 274 ~~~~~~~~~-l---~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 274 KMLEIEHGE-L---PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKD 331 (440)
T ss_pred HHHHhcCCC-C---CHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 887532221 1 13457788888887655544433222 112 255555555543
No 146
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.92 E-value=0.00013 Score=73.24 Aligned_cols=192 Identities=15% Similarity=0.104 Sum_probs=119.3
Q ss_pred CCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCC-ceEEEEecCCCCHHHH
Q 048084 173 SIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD-ERIWVCVSDPFDEFRI 251 (967)
Q Consensus 173 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~ 251 (967)
|..-.+++|.+..++.+.+.+.. ........+|++|.|||+-|..+++..--.+.|. .+.-.+++......-+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccch
Confidence 34455789999999999999864 2567889999999999999988877532234443 3333444443332211
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHh--ccCc-ceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEE-ecCChhHHh
Q 048084 252 AKAIIEALTDSASNFGEFQSLMQRIQKHV--ARKK-LLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILI-TTRKEAIAR 327 (967)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~r-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ili-Ttr~~~v~~ 327 (967)
-..+ .+...+.....+.. ..++ -.+|||+++....+.|..++..+.+....++.++ |+--..+..
T Consensus 106 r~Ki-----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 106 REKI-----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hhhh-----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 1111 01111110000000 1123 4889999999888999999999988776666554 444333222
Q ss_pred hh-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHH
Q 048084 328 IM-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKT 385 (967)
Q Consensus 328 ~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (967)
.+ .....+...+|..++...-++..+-..+...+ .+..+.|++.++|--.-...
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdLR~Ait 229 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDLRRAIT 229 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 22 22457889999999999988888755443322 34577889999885543333
No 147
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.87 E-value=0.00015 Score=87.17 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=86.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc---ccC-CceEEEEecCCCCHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK---KYF-DERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~~~~ 252 (967)
..++||+++++++++.|... ...-+.++|++|+|||++|+.+++..... ..+ +..+|. + +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh
Confidence 36899999999999988643 22346799999999999998888752111 111 223332 1 111111
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCCC---------hhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 253 KAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNEN---------FYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
. . .....+.++....+.+.+ ..++.+|++|+++... .+.-..++..+..+ .-++|-+|..
T Consensus 251 a----~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 251 A----G----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred h----h----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 1 0 001123333333333333 3457899999996321 11122344444321 2344544443
Q ss_pred hhHHh------h-hCCcceeecCCCChhhHHHHHHHHh
Q 048084 323 EAIAR------I-MGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 323 ~~v~~------~-~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
.+... . ......+.+++++.++..++++...
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22211 1 1124589999999999999998654
No 148
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.87 E-value=0.001 Score=71.31 Aligned_cols=211 Identities=11% Similarity=0.124 Sum_probs=129.7
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHH-HHHHcCccccccCCceEEEEecCC---CCHHHHHHHHHH
Q 048084 182 REDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLA-QFAYNNGDVKKYFDERIWVCVSDP---FDEFRIAKAIIE 257 (967)
Q Consensus 182 R~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~ 257 (967)
|.+.+++|..||...++ ..|.|.|+-|+||+.|+ .++.++. ..++.++|.+- .+-..++..++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHH
Confidence 67889999999976543 69999999999999999 8877752 22777777542 334555666665
Q ss_pred Hhc-----------------------cCCCC-CCChH-HHH-------HHHHHH-------------------h---ccC
Q 048084 258 ALT-----------------------DSASN-FGEFQ-SLM-------QRIQKH-------------------V---ARK 283 (967)
Q Consensus 258 ~l~-----------------------~~~~~-~~~~~-~~~-------~~l~~~-------------------l---~~~ 283 (967)
+++ +...+ ..+.+ ++. ..|++. + ..+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 543 11111 12222 111 112220 1 012
Q ss_pred cceEeecCCCCCC---hhhHHHHHhhhc--CCCCCcEEEEecCChhHHh----hhC--CcceeecCCCChhhHHHHHHHH
Q 048084 284 KLLLVLDDVWNEN---FYKWEQFNNCLK--NCLHGSKILITTRKEAIAR----IMG--SIDIISINVLSEIECWSVFELL 352 (967)
Q Consensus 284 r~LlvlDdv~~~~---~~~~~~l~~~l~--~~~~gs~iliTtr~~~v~~----~~~--~~~~~~l~~l~~~~~~~l~~~~ 352 (967)
|-++|+||+.... ..-|+.+...-. -..+-.+||++|-+..... .+. ....+.|...+++.|..+....
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 6799999995432 122333333211 1134567888887754333 332 2568899999999999999888
Q ss_pred hcCCCCC------------cc----chhHHHHHHHHHHHcCCChhHHHHHHHHHccCCCHHH-HHHHHh
Q 048084 353 AFSGKSM------------EE----RENLEKIGREIVGKCKGLPLAAKTIASLLRSKNTRKE-WQNILE 404 (967)
Q Consensus 353 ~~~~~~~------------~~----~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~-w~~~l~ 404 (967)
....... .. ......-....++.+||--.-+..+++.++...++++ -.++..
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6543110 00 0123344567888999999999999999988766543 333443
No 149
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.83 E-value=6.1e-05 Score=80.30 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=62.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC--CCHHHHHHHHHHHhccCCCCCCChH------HHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP--FDEFRIAKAIIEALTDSASNFGEFQ------SLMQ 274 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 274 (967)
....++|+|++|+|||||++.+++.... .+|+..+||.+.+. .++.++++.+...+-....+..... .+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4578999999999999999999997433 37998999998865 7888999988554433222221111 1122
Q ss_pred HHHHH-hccCcceEeecCCCC
Q 048084 275 RIQKH-VARKKLLLVLDDVWN 294 (967)
Q Consensus 275 ~l~~~-l~~~r~LlvlDdv~~ 294 (967)
..+.. -.+++.+|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 22222 257899999999943
No 150
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.83 E-value=0.00046 Score=78.26 Aligned_cols=162 Identities=13% Similarity=0.090 Sum_probs=95.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccC--CceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF--DERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV 280 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (967)
....+.|+|++|+|||+|++.+++. ....+ ..++|+++. ++..++...+... ..++ +.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~----~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEE----FKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHH
Confidence 3456899999999999999999986 33332 235566433 3344444444211 1222 22333
Q ss_pred ccCcceEeecCCCCCCh-h-hHHHHHhhhcC-CCCCcEEEEecCChh---------HHhhhCCcceeecCCCChhhHHHH
Q 048084 281 ARKKLLLVLDDVWNENF-Y-KWEQFNNCLKN-CLHGSKILITTRKEA---------IARIMGSIDIISINVLSEIECWSV 348 (967)
Q Consensus 281 ~~~r~LlvlDdv~~~~~-~-~~~~l~~~l~~-~~~gs~iliTtr~~~---------v~~~~~~~~~~~l~~l~~~~~~~l 348 (967)
+ +.-+||+||++.... . ..+.+...+.. ...|..||+||.... +...+.....+++++.+.++..++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 345899999965321 1 11223322211 113445888876532 122334455899999999999999
Q ss_pred HHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 349 FELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
+++.+...... -..++...|++.+.|..-.+.-+
T Consensus 289 l~~~~~~~~~~----l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 289 LKKKAEEEGID----LPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHcCCC----CCHHHHHHHHcCcCCCHHHHHHH
Confidence 99887542211 12345788889998887654433
No 151
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=4.5e-05 Score=81.76 Aligned_cols=65 Identities=22% Similarity=0.433 Sum_probs=34.4
Q ss_pred hccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCc
Q 048084 589 FDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQ 665 (967)
Q Consensus 589 ~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 665 (967)
+..+.+++.|+++ +| .+..+|. + -.+|+.|.+++|..++.+|..+ ..+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is-----~c--~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIK-----DC--DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeC-----CC--CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 3345666666666 53 3555551 1 1246666666655555555433 24566666666644555553
No 152
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00095 Score=77.03 Aligned_cols=194 Identities=16% Similarity=0.111 Sum_probs=109.4
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
.-.+++|.+...+.+.+++... .-.+...++|+.|+||||+|+.+.+..--....+ ..+++.-...+.
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~ 81 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKA 81 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHH
Confidence 3457899999999999998643 2356778899999999999988876411000000 001111111111
Q ss_pred HHHHhcc-----CCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEec-CChh
Q 048084 255 IIEALTD-----SASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITT-RKEA 324 (967)
Q Consensus 255 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTt-r~~~ 324 (967)
+...... +.......++....+... ..+++-++|+|+++......+..+...+........+|++| ....
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 1110000 000011222222221111 13456688999998776667777777776544455555444 4333
Q ss_pred HHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHH
Q 048084 325 IARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAK 384 (967)
Q Consensus 325 v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 384 (967)
+... ......++..+++.++..+.+...+...+... ..+.+..|++.++|.+..+.
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i----~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY----EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 3222 22345788999999999988887764433211 13446778888988775443
No 153
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.0027 Score=68.51 Aligned_cols=136 Identities=16% Similarity=0.173 Sum_probs=85.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCC--ceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD--ERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV 280 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (967)
....+.|+|..|.|||.|++.+.+. ...... .++++ +.+....+++..+.. .-...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~------~se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL------TSEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec------cHHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 4678999999999999999999996 333333 34444 344555555555432 1223344444
Q ss_pred ccCcceEeecCCCCCC-hhhHHH-HHhhhcCC-CCCcEEEEecCCh---------hHHhhhCCcceeecCCCChhhHHHH
Q 048084 281 ARKKLLLVLDDVWNEN-FYKWEQ-FNNCLKNC-LHGSKILITTRKE---------AIARIMGSIDIISINVLSEIECWSV 348 (967)
Q Consensus 281 ~~~r~LlvlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iliTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l 348 (967)
.-=++++||++... .+.|+. +...+..- ..|-.||+|++.. .+...+.+.-.+++++.+.+...++
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 34488999996521 112222 22222211 2344799998752 3444556677999999999999999
Q ss_pred HHHHhcCCC
Q 048084 349 FELLAFSGK 357 (967)
Q Consensus 349 ~~~~~~~~~ 357 (967)
+.+.+....
T Consensus 253 L~kka~~~~ 261 (408)
T COG0593 253 LRKKAEDRG 261 (408)
T ss_pred HHHHHHhcC
Confidence 998765443
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.81 E-value=0.00018 Score=87.66 Aligned_cols=155 Identities=18% Similarity=0.198 Sum_probs=87.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc---ccC-CceEEEEecCCCCHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK---KYF-DERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~~~~ 252 (967)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++...... ... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999996432 2345799999999999998887752111 111 233442 1 221111
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCC--------ChhhHHHHHhhhcCCCCCcEEEEecCCh
Q 048084 253 KAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNE--------NFYKWEQFNNCLKNCLHGSKILITTRKE 323 (967)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iliTtr~~ 323 (967)
.+. ....++++....+-+.+ ..++.+|++|+++.. ..+.-..++..+.. ..-++|-+|...
T Consensus 248 -------ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ 317 (821)
T CHL00095 248 -------AGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLD 317 (821)
T ss_pred -------ccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHH
Confidence 111 11123333333333333 356889999999421 11111223333333 234566666655
Q ss_pred hHHhh-------hCCcceeecCCCChhhHHHHHHHH
Q 048084 324 AIARI-------MGSIDIISINVLSEIECWSVFELL 352 (967)
Q Consensus 324 ~v~~~-------~~~~~~~~l~~l~~~~~~~l~~~~ 352 (967)
+.... .....++.++..+.++..++++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43221 122457888999999988888653
No 155
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=6.9e-07 Score=98.49 Aligned_cols=84 Identities=26% Similarity=0.375 Sum_probs=46.6
Q ss_pred hhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccC
Q 048084 586 PQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELP 664 (967)
Q Consensus 586 ~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp 664 (967)
...+.-++.|+.|+|+ + |.+.+.- .+..|++|++|||++|. +..+|. ....|. |+.|.|++|. ++.+
T Consensus 180 D~SLqll~ale~LnLs-----h--Nk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL- 247 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLS-----H--NKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTL- 247 (1096)
T ss_pred HHHHHHHHHhhhhccc-----h--hhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhh-
Confidence 3445555566666666 3 3333332 45556666666666666 666554 122333 6666666665 5555
Q ss_pred ccccccccccEEecCCC
Q 048084 665 QGIGKLRKLMYLYNDRT 681 (967)
Q Consensus 665 ~~l~~l~~L~~L~l~~~ 681 (967)
.++.+|.+|+.|++++|
T Consensus 248 ~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred hhHHhhhhhhccchhHh
Confidence 35666666666666666
No 156
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00081 Score=75.14 Aligned_cols=155 Identities=18% Similarity=0.093 Sum_probs=88.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.|+|+.|+|||+|++.+++... .....++|++ ...+...+...+... .. ..++..+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 45789999999999999999998632 2223456664 334444555444321 11 22333332 3
Q ss_pred cceEeecCCCCCChhh--HHHHHhhhcCC-CCCcEEEEecCCh---------hHHhhhCCcceeecCCCChhhHHHHHHH
Q 048084 284 KLLLVLDDVWNENFYK--WEQFNNCLKNC-LHGSKILITTRKE---------AIARIMGSIDIISINVLSEIECWSVFEL 351 (967)
Q Consensus 284 r~LlvlDdv~~~~~~~--~~~l~~~l~~~-~~gs~iliTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~~~ 351 (967)
.-+|++||++...... -+.+...+... ..|..||+||... .+...+.....+.+.+++.++..+++++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 5589999996532111 12233222110 1355688888642 1222334456889999999999999988
Q ss_pred HhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 352 LAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
.+...+.. .+ .++..-|++.+.|.-
T Consensus 283 k~~~~~~~-l~---~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALSIR-IE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcCCC-CC---HHHHHHHHHhcCCCH
Confidence 77543321 11 234555666665443
No 157
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.00082 Score=76.34 Aligned_cols=163 Identities=11% Similarity=0.043 Sum_probs=95.0
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.|+|..|+|||.|++.+++.......-..++|++ ..++..++...+... ..+. +++.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~~~~----f~~~y~~- 377 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----KGDS----FRRRYRE- 377 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----cHHH----HHHHhhc-
Confidence 34589999999999999999998622111112456764 344444554443211 1122 2333332
Q ss_pred cceEeecCCCCCCh-hhHH-HHHhhhcCC-CCCcEEEEecCCh---------hHHhhhCCcceeecCCCChhhHHHHHHH
Q 048084 284 KLLLVLDDVWNENF-YKWE-QFNNCLKNC-LHGSKILITTRKE---------AIARIMGSIDIISINVLSEIECWSVFEL 351 (967)
Q Consensus 284 r~LlvlDdv~~~~~-~~~~-~l~~~l~~~-~~gs~iliTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~~~ 351 (967)
.=+|||||++.... ..|. .+...+... ..|..|||||+.. .+...+...-.+.|.+.+.+.-.+++++
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 35899999975421 2222 233333211 2355688888862 2333445566899999999999999998
Q ss_pred HhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 352 LAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
.+....-.. -.+++.-|++++.+..-.|.-+
T Consensus 458 ka~~r~l~l----~~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 458 KAVQEQLNA----PPEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHhcCCCC----CHHHHHHHHHhccCCHHHHHHH
Confidence 875433221 1345667777777665444443
No 158
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00044 Score=77.64 Aligned_cols=168 Identities=20% Similarity=0.237 Sum_probs=99.7
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
.-+.+.+|-++..++|++.|.-..-...-..++++++|++|+|||+|++.+++- ....| +-++++...|..++-.
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf---vR~sLGGvrDEAEIRG 394 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF---VRISLGGVRDEAEIRG 394 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE---EEEecCccccHHHhcc
Confidence 345678999999999999996332212335589999999999999999999984 44444 3445566555554421
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChh----hHHHHHhhhcCCC-------------CCcEE
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFY----KWEQFNNCLKNCL-------------HGSKI 316 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~----~~~~l~~~l~~~~-------------~gs~i 316 (967)
-... .-..-...+++.+++. +.+.-+++||.++-...+ --..+...|.+.. .=|.|
T Consensus 395 -----HRRT-YIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 395 -----HRRT-YIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred -----cccc-ccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 0111 1112234455555543 566889999998532110 0112333332111 12344
Q ss_pred E-EecCCh-h-H-HhhhCCcceeecCCCChhhHHHHHHHHh
Q 048084 317 L-ITTRKE-A-I-ARIMGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 317 l-iTtr~~-~-v-~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
+ |||-+. + + +..++...+|++.+-+++|-.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 444432 2 1 2223456799999999999888887765
No 159
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.0012 Score=70.31 Aligned_cols=196 Identities=17% Similarity=0.130 Sum_probs=111.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcc--------------ccccCCceEEEEe
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGD--------------VKKYFDERIWVCV 242 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~--------------~~~~f~~~~wv~~ 242 (967)
.+++|.++..+.+...+... .-.+...++|+.|+||+++|..+++..- ...|.| ..|+.-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p 77 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEP 77 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEec
Confidence 46899999999999998642 2357899999999999999977665311 011222 233321
Q ss_pred cCCCCHHHHHHHHHHHhc--cCCCCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcE
Q 048084 243 SDPFDEFRIAKAIIEALT--DSASNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSK 315 (967)
Q Consensus 243 ~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ 315 (967)
....+-..+-..-++..+ .........++. +.+.+.+ .+++-++|+|+++..+......+...+....+..-
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~f 156 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTL 156 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeE
Confidence 100000000001111111 111112223332 2333333 34567999999987776777778877765553333
Q ss_pred EEEecCChhHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 316 ILITTRKEAIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 316 iliTtr~~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
|++|+....+... ......+++.+++.++..+.+.+....... ......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-------~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-------NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-------hhHHHHHHHHcCCCHHHHHHH
Confidence 4444443333332 233568999999999999999876421110 111357889999999765543
No 160
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.75 E-value=0.00064 Score=76.24 Aligned_cols=169 Identities=14% Similarity=0.141 Sum_probs=90.3
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc---ccCCceEEEEecCC
Q 048084 176 ESEIFGREDEKNDLVNRLICEGS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK---KYFDERIWVCVSDP 245 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~ 245 (967)
-.++.|.+..+++|.+.+..+-. ..-..++-+.++|++|+|||++|+.+++..... .......|+.+...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 34688899999999888642110 011235679999999999999999999863211 01123445544331
Q ss_pred CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCCC-------hhh-----HHHHHhhhcCCC-
Q 048084 246 FDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNEN-------FYK-----WEQFNNCLKNCL- 311 (967)
Q Consensus 246 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~~-------~~~-----~~~l~~~l~~~~- 311 (967)
+++.... .. .......+....+... .+++.+++||+++... ..+ ...+...+....
T Consensus 261 ----eLl~kyv----Ge--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 ----ELLNKYV----GE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ----hhccccc----ch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 1111000 00 0000111222222221 3468999999996421 011 123333333221
Q ss_pred -CCcEEEEecCChhH-Hhhh----CCcceeecCCCChhhHHHHHHHHhc
Q 048084 312 -HGSKILITTRKEAI-ARIM----GSIDIISINVLSEIECWSVFELLAF 354 (967)
Q Consensus 312 -~gs~iliTtr~~~v-~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~ 354 (967)
.+..||.||..... ...+ .....|.++..+.++..++|..+..
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 33445555554332 1111 1244689999999999999998763
No 161
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.001 Score=71.11 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=66.6
Q ss_pred cCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh-HHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCC
Q 048084 282 RKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA-IARI-MGSIDIISINVLSEIECWSVFELLAFSGKSM 359 (967)
Q Consensus 282 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~-v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 359 (967)
+++-++|+|+++..+......+...+.....++.+|+||.+.. +... ......+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 3455667899998887788888888876666777777777643 2222 233568999999999999998765311 1
Q ss_pred ccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 360 EERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 360 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
. .+.+..++..++|.|.....+
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 122557788999999755444
No 162
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.72 E-value=0.002 Score=78.05 Aligned_cols=166 Identities=18% Similarity=0.229 Sum_probs=86.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
..+++|.++..++|.+++............++.++|++|+|||++|+.+++. ....| +-+.++...+..++...
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g~- 392 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRGH- 392 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcCC-
Confidence 3458899999999988765321111223458999999999999999999985 32232 22233332233222110
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChh----hHHHHHhhhcC--------C-------CCCcEE
Q 048084 256 IEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFY----KWEQFNNCLKN--------C-------LHGSKI 316 (967)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~----~~~~l~~~l~~--------~-------~~gs~i 316 (967)
...........+.+.+... ..++-+++||+++..... ....+...+.. . ..+..+
T Consensus 393 -----~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 393 -----RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred -----CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 0000111122333334333 233448899998643210 11223332221 0 012333
Q ss_pred EEecCChh-HHhh-hCCcceeecCCCChhhHHHHHHHHh
Q 048084 317 LITTRKEA-IARI-MGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 317 liTtr~~~-v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
|.||.... +... ......+++.+++.++-.+++..+.
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 44554321 1111 2234588999999999888887654
No 163
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.68 E-value=8.1e-06 Score=71.27 Aligned_cols=84 Identities=27% Similarity=0.294 Sum_probs=41.8
Q ss_pred hccCCcceEEEecccCccccccccccccccccc-CCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccc
Q 048084 589 FDKLICLRALKLEVRGWRSCENYIKEIPTNIEK-LLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGI 667 (967)
Q Consensus 589 ~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~-l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l 667 (967)
+....+|...+|+ + |.+.++|..+.. .+.++.|+|++|. |.++|..+..++.|+.|++++|. +...|..+
T Consensus 49 l~~~~el~~i~ls-----~--N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi 119 (177)
T KOG4579|consen 49 LSKGYELTKISLS-----D--NGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVI 119 (177)
T ss_pred HhCCceEEEEecc-----c--chhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHH
Confidence 3444444445555 4 444445444432 2345555555555 55555555555555555555555 44445555
Q ss_pred cccccccEEecCCC
Q 048084 668 GKLRKLMYLYNDRT 681 (967)
Q Consensus 668 ~~l~~L~~L~l~~~ 681 (967)
..|.+|-.|+..+|
T Consensus 120 ~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 120 APLIKLDMLDSPEN 133 (177)
T ss_pred HHHHhHHHhcCCCC
Confidence 44555555554444
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.67 E-value=9.7e-05 Score=68.31 Aligned_cols=96 Identities=22% Similarity=0.076 Sum_probs=52.9
Q ss_pred EEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC-cc
Q 048084 207 ISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK-KL 285 (967)
Q Consensus 207 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-r~ 285 (967)
|.|+|++|+|||++|+.++++. .. .++.++.+...+. ........+...+.+.-... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~---~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GF---PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TS---EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--cc---ccccccccccccc---------------cccccccccccccccccccccce
Confidence 5799999999999999999962 21 2344443321100 01111122233333322233 79
Q ss_pred eEeecCCCCCChhh-----------HHHHHhhhcCCCC---CcEEEEecCC
Q 048084 286 LLVLDDVWNENFYK-----------WEQFNNCLKNCLH---GSKILITTRK 322 (967)
Q Consensus 286 LlvlDdv~~~~~~~-----------~~~l~~~l~~~~~---gs~iliTtr~ 322 (967)
++++||++...... ...+...+..... +..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999996543332 3445555554332 3566667765
No 165
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=0.00034 Score=80.63 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=43.0
Q ss_pred CCCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 172 SSIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 172 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|....+++|.++.++++..++..... .....++++|+|++|+||||+++.++..
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 444556799999999999999865432 1223468999999999999999999975
No 166
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=6.1e-05 Score=53.27 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=32.8
Q ss_pred CcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccch
Q 048084 593 ICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPE 641 (967)
Q Consensus 593 ~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~ 641 (967)
++|++|+++ + +.+..+|..+++|++|++|++++|. ++.+|.
T Consensus 1 ~~L~~L~l~-----~--N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLS-----N--NQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEET-----S--SS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEcc-----C--CCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 468899998 7 7788888888999999999999998 887764
No 167
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00097 Score=74.55 Aligned_cols=168 Identities=18% Similarity=0.208 Sum_probs=96.7
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
.-+.+.+|.++..++|.+.+.-..-..+-+.++++.+|++|+|||++|+.+++- ....| +-++++...++.++-.
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIKG 482 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhcc
Confidence 346678999999999999986332223446789999999999999999999985 43444 2455666666655421
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCCh----hhHHHHHhhhcCC-------------CCCcEE
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENF----YKWEQFNNCLKNC-------------LHGSKI 316 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~----~~~~~l~~~l~~~-------------~~gs~i 316 (967)
. ... .-..-...+++.+++. +...-|+.+|.|+-... +--..+...+.+. -.=|+|
T Consensus 483 H-----RRT-YVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 483 H-----RRT-YVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred c-----cee-eeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 1 011 1112234555555554 44577888998843210 0111233332211 123566
Q ss_pred EEecCChhHHh----hhCCcceeecCCCChhhHHHHHHHHh
Q 048084 317 LITTRKEAIAR----IMGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 317 liTtr~~~v~~----~~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
++...-..+.. ..+....|++.+-..+|-.++-.++.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 65333211111 12234577888877777777666554
No 168
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.57 E-value=0.0011 Score=78.76 Aligned_cols=155 Identities=19% Similarity=0.191 Sum_probs=86.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc---c-CCceEEEEecCCCCHHHHHH
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK---Y-FDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~~ 253 (967)
.++||+++++++++.|.... ..-+.++|++|+|||++|+.+++...... . .+..+|.. +...++
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~ll- 254 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLL- 254 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHh-
Confidence 58999999999999997532 23456899999999999988886421111 1 13334421 111111
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCC--------ChhhHHH-HHhhhcCCCCCcEEEEecCCh
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNE--------NFYKWEQ-FNNCLKNCLHGSKILITTRKE 323 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~--------~~~~~~~-l~~~l~~~~~gs~iliTtr~~ 323 (967)
.+. ....+.++....+.+.+ +.++.+|++|+++.. ...+... +...+.. ..-++|-+|...
T Consensus 255 ------aG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~ 325 (758)
T PRK11034 255 ------AGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQ 325 (758)
T ss_pred ------ccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChH
Confidence 010 11123333333333333 345789999999631 1122222 3333332 233455555544
Q ss_pred hHHhh-------hCCcceeecCCCChhhHHHHHHHHh
Q 048084 324 AIARI-------MGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 324 ~v~~~-------~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
+.... ......+.+++.+.+++.++++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 33211 1224589999999999999998653
No 169
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.56 E-value=0.0018 Score=71.23 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=96.5
Q ss_pred CCCCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF 246 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 246 (967)
+.-.++.|-+...++|.+.+..+-. ..-..++.+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~-- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG-- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh--
Confidence 3345688999888888887642110 01134678999999999999999999985 22222 22211
Q ss_pred CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCC-----------Chh---hHHHHHhhhcC--C
Q 048084 247 DEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNE-----------NFY---KWEQFNNCLKN--C 310 (967)
Q Consensus 247 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~-----------~~~---~~~~l~~~l~~--~ 310 (967)
..+.... .+ .....+...+.......+.+|++|+++.. +.. .+..+...+.. .
T Consensus 213 --s~l~~k~---~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 --SEFVQKY---LG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred --HHHHHHh---cc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 1111111 00 01111222222233456889999997531 001 11122222221 1
Q ss_pred CCCcEEEEecCChhHH-hhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCC
Q 048084 311 LHGSKILITTRKEAIA-RIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGL 379 (967)
Q Consensus 311 ~~gs~iliTtr~~~v~-~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (967)
..+..||.||...... ..+ .....+.++..+.++..++|+.+...... ....+ ..++++.+.|.
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~dvd----~~~la~~t~g~ 350 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEEVD----LEDFVSRPEKI 350 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-CcccC----HHHHHHHcCCC
Confidence 2355677777754322 211 12456889988999988888876543221 11222 34556666554
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.55 E-value=0.00062 Score=63.87 Aligned_cols=88 Identities=19% Similarity=0.121 Sum_probs=48.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC-
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK- 283 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 283 (967)
..+.|+|++|+||||+|+.++.... .....++++..+........... ....... ............+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999998622 22234666665543322222111 1111111 11122223333444444433
Q ss_pred cceEeecCCCCCC
Q 048084 284 KLLLVLDDVWNEN 296 (967)
Q Consensus 284 r~LlvlDdv~~~~ 296 (967)
..++++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999997653
No 171
>PRK10536 hypothetical protein; Provisional
Probab=97.51 E-value=0.00079 Score=67.60 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=74.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEE----ecC-----CCC
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVC----VSD-----PFD 247 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~----~~~-----~~~ 247 (967)
..+.+|......+..++.. ...|.+.|++|.|||+||..+..+.-..+.|+.++-.. .++ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3467888888899888852 24899999999999999988776422233344333221 111 112
Q ss_pred HHHH----HHHHHHHhccCCCCCCChHHHHH----H----HHHHhccCcc---eEeecCCCCCChhhHHHHHhhhcCCCC
Q 048084 248 EFRI----AKAIIEALTDSASNFGEFQSLMQ----R----IQKHVARKKL---LLVLDDVWNENFYKWEQFNNCLKNCLH 312 (967)
Q Consensus 248 ~~~~----~~~i~~~l~~~~~~~~~~~~~~~----~----l~~~l~~~r~---LlvlDdv~~~~~~~~~~l~~~l~~~~~ 312 (967)
..+= ++.+...+..-. .....+.... . =..+++++.+ ++|+|++++.+. .++...+-..+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 2111 112222221100 0001111100 0 0124556644 999999988765 445555555567
Q ss_pred CcEEEEecCCh
Q 048084 313 GSKILITTRKE 323 (967)
Q Consensus 313 gs~iliTtr~~ 323 (967)
+|++|+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 99999986643
No 172
>PRK08116 hypothetical protein; Validated
Probab=97.51 E-value=0.00054 Score=71.25 Aligned_cols=103 Identities=24% Similarity=0.198 Sum_probs=60.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKK 284 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r 284 (967)
..+.|+|.+|+|||.||..+++... .....++|++ ..+++..+........ .....+ +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNA- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCC-
Confidence 4689999999999999999998632 2234466765 3445555554443211 111122 22333332
Q ss_pred ceEeecCCCCCChhhHHH--HHhhhcCC-CCCcEEEEecCC
Q 048084 285 LLLVLDDVWNENFYKWEQ--FNNCLKNC-LHGSKILITTRK 322 (967)
Q Consensus 285 ~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iliTtr~ 322 (967)
=||||||+......+|.. +...+... ..+..+||||..
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 389999996544344543 33333321 245669999985
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.50 E-value=0.0011 Score=81.18 Aligned_cols=154 Identities=14% Similarity=0.186 Sum_probs=84.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccccc----CCceEE-EEecCCCCHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKY----FDERIW-VCVSDPFDEFRI 251 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~~ 251 (967)
..++||+.++.++++.|... ...-+.++|++|+|||++|+.++........ ....+| +++ ..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GAL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHH
Confidence 35899999999999999643 2244568999999999999888775211110 122222 221 111
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHh-c-cCcceEeecCCCCCC--------hhhHHHHHhhhcCCCCC-cEEEEec
Q 048084 252 AKAIIEALTDSASNFGEFQSLMQRIQKHV-A-RKKLLLVLDDVWNEN--------FYKWEQFNNCLKNCLHG-SKILITT 320 (967)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~~r~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~g-s~iliTt 320 (967)
.. .. ....+.++....+.+.+ . +++.+|++|+++... .+.-..++..+ ..| -++|-+|
T Consensus 241 ~a-------~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaT 309 (852)
T TIGR03346 241 IA-------GA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGAT 309 (852)
T ss_pred hh-------cc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeC
Confidence 10 00 00112333333333333 2 458999999996421 01111222222 223 3455555
Q ss_pred CChhHHhh-------hCCcceeecCCCChhhHHHHHHHHh
Q 048084 321 RKEAIARI-------MGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 321 r~~~v~~~-------~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
...+.... ......+.++..+.++..+++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 54443211 1224578899999999999887653
No 174
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.50 E-value=0.00041 Score=76.66 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=88.1
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
.++.|.+..+++|.+.+.-+-.. .-...+.+.|+|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 45789999999998887422110 1124567889999999999999999985 33333 2222111
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC-----------hhh---HHHHHhhhcC--CCCC
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN-----------FYK---WEQFNNCLKN--CLHG 313 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~-----------~~~---~~~l~~~l~~--~~~g 313 (967)
+... ... .....+...+.....+.+.+++||+++... ... +..+...+.. ...+
T Consensus 253 -L~~k----~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LIQK----YLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hhhh----hcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1111 000 011112222222234568899999874210 000 1112222221 1235
Q ss_pred cEEEEecCChhHHh-hh----CCcceeecCCCChhhHHHHHHHHhcC
Q 048084 314 SKILITTRKEAIAR-IM----GSIDIISINVLSEIECWSVFELLAFS 355 (967)
Q Consensus 314 s~iliTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~ 355 (967)
..||.||....... .+ .....+.++..+.++..++|..++..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 57777777543322 22 12457899999999999999977643
No 175
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.49 E-value=4.9e-05 Score=74.38 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=69.5
Q ss_pred cccCCCCccEEEeccCCccc-hhccchhhhccCCcceEEEecccCcccccccccccc-------cccccCCCCcEEEccC
Q 048084 561 NVKGLRGLRSLLVESNEYSW-SRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-------TNIEKLLHLKYLNLFC 632 (967)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-------~~i~~l~~L~~L~Ls~ 632 (967)
.+.-+..+..++||+|.++. -...+...+.+-++|++.+++... ++ ....++| ..+-+|++|+..+||.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tg--r~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TG--RDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hc--ccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 34457778888888887531 111234446667788888877211 11 1112233 2345678888888888
Q ss_pred CCCccccc----hHHhccCCCCEEecCCCCCCcccCcc--------------ccccccccEEecCCCccccccc
Q 048084 633 QREIEKLP----ETLCELYNLERLNVSGCRNLRELPQG--------------IGKLRKLMYLYNDRTESLRYLP 688 (967)
Q Consensus 633 ~~~i~~lp----~~~~~l~~L~~L~L~~~~~l~~lp~~--------------l~~l~~L~~L~l~~~~~~~~~p 688 (967)
|-.-...| ..++.-+.|.+|.+++|. +.-+..+ ...-|.|+...+..| .+...|
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs 173 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGS 173 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCc
Confidence 76222333 345567778888888776 4433211 123466777777666 444443
No 176
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.012 Score=62.28 Aligned_cols=176 Identities=12% Similarity=0.051 Sum_probs=100.3
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccccc-------CCceEEEEecCCCCHHHHHHHHHH
Q 048084 185 EKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKY-------FDERIWVCVSDPFDEFRIAKAIIE 257 (967)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-------f~~~~wv~~~~~~~~~~~~~~i~~ 257 (967)
..+++.+.+.. +.-...+.++|+.|+||+++|+.++...--... ....-++..+...|...+
T Consensus 11 ~~~~l~~~~~~-----~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (319)
T PRK06090 11 VWQNWKAGLDA-----GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------ 79 (319)
T ss_pred HHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 34555555532 234678999999999999999777663100000 000000000000110000
Q ss_pred HhccC-CCCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hHHh-hh
Q 048084 258 ALTDS-ASNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AIAR-IM 329 (967)
Q Consensus 258 ~l~~~-~~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~-~~ 329 (967)
... .......++..+ +.+.+ .+++-++|+|+++.........+...+.....++.+|++|.+. .+.. ..
T Consensus 80 --~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 80 --KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred --ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 000 011123333332 22222 2445689999998887778888888887766677766666654 3332 23
Q ss_pred CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 330 GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 330 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
.....+.+.+++.+++.+.+.... . . .+..+++.++|.|+....+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~----~-~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG----I-T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC----C-c-------hHHHHHHHcCCCHHHHHHH
Confidence 335689999999999998886531 1 1 1346788999999876544
No 177
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=5.9e-05 Score=88.33 Aligned_cols=131 Identities=22% Similarity=0.270 Sum_probs=91.3
Q ss_pred ccEEEEEEEecCCCCCCCcccccc-cCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNV-KGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~ 617 (967)
.+++++.+.+.. .++..++..+ .-+|+|++|.+.+-.+... -+...+.++++|+.||+| + .++..+ .
T Consensus 122 ~nL~~LdI~G~~--~~s~~W~~kig~~LPsL~sL~i~~~~~~~~--dF~~lc~sFpNL~sLDIS-----~--TnI~nl-~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSE--LFSNGWPKKIGTMLPSLRSLVISGRQFDND--DFSQLCASFPNLRSLDIS-----G--TNISNL-S 189 (699)
T ss_pred HhhhhcCccccc--hhhccHHHHHhhhCcccceEEecCceecch--hHHHHhhccCccceeecC-----C--CCccCc-H
Confidence 466777776533 2233332333 4589999999998764212 145568899999999999 6 556666 6
Q ss_pred ccccCCCCcEEEccCCCCccccc--hHHhccCCCCEEecCCCCCCccc--Cc----cccccccccEEecCCCc
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLP--ETLCELYNLERLNVSGCRNLREL--PQ----GIGKLRKLMYLYNDRTE 682 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp--~~~~~l~~L~~L~L~~~~~l~~l--p~----~l~~l~~L~~L~l~~~~ 682 (967)
.+++|++|+.|.+.+-. +..-. ..+.+|++|+.||+|.......- .. .-..||+|+.|+.+++.
T Consensus 190 GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 78999999999998766 55433 35789999999999987633221 11 11248999999999874
No 178
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.45 E-value=0.0013 Score=79.91 Aligned_cols=155 Identities=12% Similarity=0.126 Sum_probs=83.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc---c-CC-ceEEEEecCCCCHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK---Y-FD-ERIWVCVSDPFDEFRI 251 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~-f~-~~~wv~~~~~~~~~~~ 251 (967)
..++||+.++.++++.|... ...-+.++|++|+|||++|+.+........ . .. .+++++.+. +
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h
Confidence 35899999999999999643 224566999999999999988887521111 0 11 222332221 1
Q ss_pred HHHHHHHhccCCCCCCChHHHHH-HHHHHh-ccCcceEeecCCCCCC--------hhhHHHHHhhhcCCCCCcEEEEecC
Q 048084 252 AKAIIEALTDSASNFGEFQSLMQ-RIQKHV-ARKKLLLVLDDVWNEN--------FYKWEQFNNCLKNCLHGSKILITTR 321 (967)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l-~~~r~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iliTtr 321 (967)
.. +. ....++++... .+.+.. .+++.+|++|+++... .+.-..+...+.. ..-++|-||.
T Consensus 246 ~a-------g~-~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt 315 (857)
T PRK10865 246 VA-------GA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 315 (857)
T ss_pred hh-------cc-chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCC
Confidence 10 00 01112222222 222221 2468899999996421 0111223333322 2335555555
Q ss_pred ChhHHhh-------hCCcceeecCCCChhhHHHHHHHHh
Q 048084 322 KEAIARI-------MGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 322 ~~~v~~~-------~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
..+.... ......+.+..-+.++..++++...
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5443111 1123366777778899999887553
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0027 Score=68.54 Aligned_cols=162 Identities=10% Similarity=0.023 Sum_probs=91.4
Q ss_pred cccc-chhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 178 EIFG-REDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 178 ~~vG-R~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
.++| .+..++.+.+.+... .-.....++|+.|+|||++|+.+.+..--....... .+... ..-+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHh
Confidence 3566 667777887777532 245778999999999999998776541100000000 00000 0000000
Q ss_pred HHhcc------CCCCCCChHHHHHHHHHH----hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh-H
Q 048084 257 EALTD------SASNFGEFQSLMQRIQKH----VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA-I 325 (967)
Q Consensus 257 ~~l~~------~~~~~~~~~~~~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~-v 325 (967)
..-.. ........+++...+... ..+++-++|+|+++.........+...+.....++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 000112233333332221 234566899999987776677778888887667777777776533 2
Q ss_pred Hhh-hCCcceeecCCCChhhHHHHHHH
Q 048084 326 ARI-MGSIDIISINVLSEIECWSVFEL 351 (967)
Q Consensus 326 ~~~-~~~~~~~~l~~l~~~~~~~l~~~ 351 (967)
... ......+++.+++.++..+.+..
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 222 23356899999999999888865
No 180
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.44 E-value=0.0013 Score=78.79 Aligned_cols=167 Identities=18% Similarity=0.193 Sum_probs=91.8
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
-+.+++|.++..++|.++|............++.++|++|+||||+|+.++.. ....| +-+..+...+..++...
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccc
Confidence 34568999999999998886422111234568999999999999999999974 22222 22334443343322211
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhh----HHHHHhhhcCC--------------C-CCcE
Q 048084 255 IIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYK----WEQFNNCLKNC--------------L-HGSK 315 (967)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~----~~~l~~~l~~~--------------~-~gs~ 315 (967)
-.... ......+.+.+.+. ....-++++|+++...... ...+...+... . ...-
T Consensus 395 ~~~~~------g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 395 RRTYI------GSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hhccC------CCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 10000 01112333334332 2234578999986432111 23444444321 1 2233
Q ss_pred EEEecCChhHHhh-hCCcceeecCCCChhhHHHHHHHHh
Q 048084 316 ILITTRKEAIARI-MGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 316 iliTtr~~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
+|.|+....+... .+...++++.+++.+|-.++.+++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 3345543332222 2234588999999999888887765
No 181
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0045 Score=65.59 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=64.9
Q ss_pred cCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCC
Q 048084 282 RKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSM 359 (967)
Q Consensus 282 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 359 (967)
+++-++|+|+++......-..+...+.....++.+|++|.+. .+... ......+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~-- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V-- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--
Confidence 456699999998777666677777777666677677666653 33322 2335688999999999988886531 1
Q ss_pred ccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 360 EERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 360 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
. ...+..++..++|.|+....+
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 112567899999999866544
No 182
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.0024 Score=70.54 Aligned_cols=165 Identities=22% Similarity=0.195 Sum_probs=94.2
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhc
Q 048084 181 GREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALT 260 (967)
Q Consensus 181 GR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 260 (967)
-|..-+.++.+.+.. ...++.|.|+-++||||+++.+... .... .+++...+......-+.+
T Consensus 21 ~~~~~~~~l~~~~~~-------~~~i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d------ 82 (398)
T COG1373 21 ERRKLLPRLIKKLDL-------RPFIILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD------ 82 (398)
T ss_pred hHHhhhHHHHhhccc-------CCcEEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH------
Confidence 344555555555521 2229999999999999999777664 1111 566654432211111111
Q ss_pred cCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHH-----hh-hCCcce
Q 048084 261 DSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIA-----RI-MGSIDI 334 (967)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~-----~~-~~~~~~ 334 (967)
....+...-..++..++||.|+.. ..|......+.+.++. +|++|+-+.... .. .+....
T Consensus 83 -----------~~~~~~~~~~~~~~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~ 148 (398)
T COG1373 83 -----------LLRAYIELKEREKSYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKD 148 (398)
T ss_pred -----------HHHHHHHhhccCCceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCcee
Confidence 111111111226789999999876 6788877777765555 788887764332 22 233568
Q ss_pred eecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHH
Q 048084 335 ISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKT 385 (967)
Q Consensus 335 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (967)
+++.||+-.|...+-...+ ....... .-.-.-..||.|-++..
T Consensus 149 ~~l~PlSF~Efl~~~~~~~-------~~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 149 LELYPLSFREFLKLKGEEI-------EPSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred EEECCCCHHHHHhhccccc-------chhHHHH-HHHHHHHhCCCcHHHhC
Confidence 8999999988766543000 0001111 22223356999987764
No 183
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=3.1e-05 Score=67.70 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=76.2
Q ss_pred cccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccc
Q 048084 561 NVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLP 640 (967)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp 640 (967)
.+....+|...++++|. +..+.+.+-..++.++.|+|+ + |.+.++|..+..++.|+.|+++.|. +...|
T Consensus 48 ~l~~~~el~~i~ls~N~---fk~fp~kft~kf~t~t~lNl~-----~--neisdvPeE~Aam~aLr~lNl~~N~-l~~~p 116 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNG---FKKFPKKFTIKFPTATTLNLA-----N--NEISDVPEELAAMPALRSLNLRFNP-LNAEP 116 (177)
T ss_pred HHhCCceEEEEecccch---hhhCCHHHhhccchhhhhhcc-----h--hhhhhchHHHhhhHHhhhcccccCc-cccch
Confidence 44566777788888887 444455655677789999998 7 8889999889999999999999999 88888
Q ss_pred hHHhccCCCCEEecCCCCCCcccCcc
Q 048084 641 ETLCELYNLERLNVSGCRNLRELPQG 666 (967)
Q Consensus 641 ~~~~~l~~L~~L~L~~~~~l~~lp~~ 666 (967)
..+..|.+|-.|+..+|. ...+|-.
T Consensus 117 ~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 888889999999999887 6677655
No 184
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0063 Score=64.58 Aligned_cols=175 Identities=10% Similarity=-0.014 Sum_probs=99.7
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccC--------CceEEEEecCCCCHHHHHHHHHH
Q 048084 186 KNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF--------DERIWVCVSDPFDEFRIAKAIIE 257 (967)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~i~~ 257 (967)
-+.+.+.+... .-.....++|+.|+||+++|+.+++..--.... ...-++..+..+|...+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 44555565422 245788899999999999998777631100000 00000111111111100
Q ss_pred HhccCCCCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hHHhh-hC
Q 048084 258 ALTDSASNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AIARI-MG 330 (967)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~-~~ 330 (967)
..........++..+ +.+.+ .+++-++|+|+++.........+...+.....++.+|++|.+. .+... ..
T Consensus 80 --~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 --EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred --ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 000011123333333 22222 3556688999998887777888888887766777777777654 33322 23
Q ss_pred CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHH
Q 048084 331 SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAA 383 (967)
Q Consensus 331 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (967)
....+.+.+++.++..+.+...... . ...+...+..++|.|..+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~-----~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA-----E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc-----C----hHHHHHHHHHcCCCHHHH
Confidence 3568999999999999888765311 1 112556788899999633
No 185
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0056 Score=63.28 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=102.0
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
.++=|-++.+++|.+...-+-.. .=+.++-|.+||++|.|||-||+.|+++ .... |+.+.. .
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~At-----FIrvvg----S 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDAT-----FIRVVG----S 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCce-----EEEecc----H
Confidence 34667899999998886432110 1235678999999999999999999996 3333 343332 2
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhc-cCcceEeecCCCCC-----------Ch---hhHHHHHhhhcCCC--C
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHVA-RKKLLLVLDDVWNE-----------NF---YKWEQFNNCLKNCL--H 312 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~r~LlvlDdv~~~-----------~~---~~~~~l~~~l~~~~--~ 312 (967)
++.+..+ .+-..+++.+-+..+ +.+.+|++|.++.- +. ..+-++...+..+. .
T Consensus 220 ElVqKYi----------GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ELVQKYI----------GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred HHHHHHh----------ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 2333221 112234444444443 45889999988421 11 12233444444332 4
Q ss_pred CcEEEEecCChhHHhh-----hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 313 GSKILITTRKEAIARI-----MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 313 gs~iliTtr~~~v~~~-----~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
.-|||.+|........ -.-...|+++.-+.+.-.++|+-++..-.. ...-+ .+.+++.+.|.-
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVD----LELLARLTEGFS 357 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcC----HHHHHHhcCCCc
Confidence 5688887765433221 122457888866666667778777644332 22223 445667776654
No 186
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.39 E-value=0.014 Score=56.81 Aligned_cols=123 Identities=19% Similarity=0.226 Sum_probs=72.7
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
++-..++|-+...+.+++--..-.. .....-|.++|.-|+|||+|++.+.+. +....-. -|.+... +
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~----d--- 123 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE----D--- 123 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH----H---
Confidence 4445689988888877765432211 223456889999999999999999886 3333322 2333221 1
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCC-CChhhHHHHHhhhcCC---CCCcEEEEecCCh
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWN-ENFYKWEQFNNCLKNC---LHGSKILITTRKE 323 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iliTtr~~ 323 (967)
...+..+...++. ..+||+|+.||+.- .+...+..++..+..+ .+...++..|.++
T Consensus 124 ------------l~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 124 ------------LATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------------HhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1112222222221 35699999999953 3345677888887654 2444455555543
No 187
>CHL00176 ftsH cell division protein; Validated
Probab=97.37 E-value=0.0032 Score=73.41 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=95.1
Q ss_pred CCccccchhhHHHHHHHH---hcCCC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 176 ESEIFGREDEKNDLVNRL---ICEGS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L---~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
-.+++|.++..+++.+.+ ..+.. -.....+-|.++|++|+|||+||+.++... . +-|+.++. .
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~----s 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISG----S 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccH----H
Confidence 346788876666655543 22110 011235679999999999999999998852 1 22333321 1
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC----------hhhHHH-HHhh---hcC--CCCC
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN----------FYKWEQ-FNNC---LKN--CLHG 313 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~----------~~~~~~-l~~~---l~~--~~~g 313 (967)
++.... .+ .....+...+.......+.+|++||++... ...+.. +... +.. ...+
T Consensus 251 ~f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111100 00 111223334444445678999999995321 111222 2222 221 1235
Q ss_pred cEEEEecCChhH-Hhhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCC
Q 048084 314 SKILITTRKEAI-ARIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKG 378 (967)
Q Consensus 314 s~iliTtr~~~v-~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 378 (967)
..||.||..... ...+ .....+.++..+.++-.++++.++..... . + ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~--~--d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-S--P--DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-c--h--hHHHHHHHhcCCC
Confidence 556666665432 2211 12357888888999999999887644211 1 1 1224567777776
No 188
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.35 E-value=0.0031 Score=60.12 Aligned_cols=137 Identities=17% Similarity=0.131 Sum_probs=76.8
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc------------------ccCCceEEEEe
Q 048084 181 GREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK------------------KYFDERIWVCV 242 (967)
Q Consensus 181 GR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~------------------~~f~~~~wv~~ 242 (967)
|-++..+.+.+.+... .-+..+.++|+.|+||+++|..+++..--. ....-+.|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 5566777777777532 245678999999999999997777631100 11112223322
Q ss_pred cCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEE
Q 048084 243 SDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKIL 317 (967)
Q Consensus 243 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~il 317 (967)
.... .....++.. .+...+ .+++=++|+|+++....+....++..+......+.+|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2110 011222222 233322 2346699999999888888888999998877888888
Q ss_pred EecCChh-HHh-hhCCcceeecCCCC
Q 048084 318 ITTRKEA-IAR-IMGSIDIISINVLS 341 (967)
Q Consensus 318 iTtr~~~-v~~-~~~~~~~~~l~~l~ 341 (967)
++|++.. +.. .......+.+.++|
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888754 222 22334466666553
No 189
>PRK12377 putative replication protein; Provisional
Probab=97.34 E-value=0.00052 Score=69.86 Aligned_cols=102 Identities=22% Similarity=0.122 Sum_probs=58.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.|+|.+|+|||+||..+++.. ......++++++. +++..+-..... .....+. + +.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~---l-~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF---L-QEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH---H-HHh-cC
Confidence 3579999999999999999999863 3333446777543 444444433321 1111122 2 222 34
Q ss_pred cceEeecCCCCCChhhHHH--HHhhhcCC-CCCcEEEEecCC
Q 048084 284 KLLLVLDDVWNENFYKWEQ--FNNCLKNC-LHGSKILITTRK 322 (967)
Q Consensus 284 r~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iliTtr~ 322 (967)
--|||+||+.......|.. +...+..- ...-.+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6699999996544344543 33333321 123348888874
No 190
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.33 E-value=0.011 Score=72.65 Aligned_cols=137 Identities=12% Similarity=0.211 Sum_probs=79.9
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSK---EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..++|.+..++.+.+.+...... .+....++.++|+.|+|||++|+.+... ....-...+.++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 46899999999999998753210 1122467889999999999999999874 2122233455555543221111
Q ss_pred HHHHHhccCCC--CCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEec
Q 048084 254 AIIEALTDSAS--NFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITT 320 (967)
Q Consensus 254 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTt 320 (967)
.+.++.... +..+...+...+++ ....+|+||++...+...+..+...+..+. ..+-||+||
T Consensus 641 --~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 641 --ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred --HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 111121111 11111222222222 234489999998887777888888775441 234477777
Q ss_pred CC
Q 048084 321 RK 322 (967)
Q Consensus 321 r~ 322 (967)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 75
No 191
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.31 E-value=0.01 Score=61.82 Aligned_cols=124 Identities=14% Similarity=0.113 Sum_probs=65.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH-------
Q 048084 184 DEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII------- 256 (967)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~------- 256 (967)
+.++++..++.. .+.|.|.|++|+|||++|+.+... .. ...+++++....+..+++....
T Consensus 9 ~l~~~~l~~l~~--------g~~vLL~G~~GtGKT~lA~~la~~--lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~ 75 (262)
T TIGR02640 9 RVTSRALRYLKS--------GYPVHLRGPAGTGKTTLAMHVARK--RD---RPVMLINGDAELTTSDLVGSYAGYTRKKV 75 (262)
T ss_pred HHHHHHHHHHhc--------CCeEEEEcCCCCCHHHHHHHHHHH--hC---CCEEEEeCCccCCHHHHhhhhcccchhhH
Confidence 344555555532 245779999999999999999863 22 1345666665555554433211
Q ss_pred -----HHhccCCC-CCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCC----------------CCCc
Q 048084 257 -----EALTDSAS-NFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNC----------------LHGS 314 (967)
Q Consensus 257 -----~~l~~~~~-~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~----------------~~gs 314 (967)
........ ....+. ...+.... .+...+++|++.....+....+...+... .++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~--~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~f 152 (262)
T TIGR02640 76 HDQFIHNVVKLEDIVRQNWV--DNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEF 152 (262)
T ss_pred HHHHHHHhhhhhcccceeec--CchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCC
Confidence 00000000 000000 00111111 23568999999876655555566655321 1356
Q ss_pred EEEEecCCh
Q 048084 315 KILITTRKE 323 (967)
Q Consensus 315 ~iliTtr~~ 323 (967)
+||+|+...
T Consensus 153 rvIaTsN~~ 161 (262)
T TIGR02640 153 RVIFTSNPV 161 (262)
T ss_pred EEEEeeCCc
Confidence 788888753
No 192
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.29 E-value=0.00055 Score=73.60 Aligned_cols=143 Identities=16% Similarity=0.204 Sum_probs=86.6
Q ss_pred HhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCccccC
Q 048084 783 LLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLG 862 (967)
Q Consensus 783 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~ 862 (967)
....+..+.++++|++++|.+.. + |. -.++|+.|.+++|..++.+|..- .++|+.|++++|..+..+|..+..
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~s--L-P~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~sLe~ 116 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIES--L-PV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPESVRS 116 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCcc--c-CC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccccce
Confidence 34445556899999999997776 6 42 23579999999998877777521 368999999999878766654432
Q ss_pred CCCCC-CCcccccc-cccccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCC
Q 048084 863 VESDT-DGSSVIAF-PKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGC 940 (967)
Q Consensus 863 ~~~~~-~~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 940 (967)
..-.. ....+..+ ++|+.|.+.++........ + ..-.++|+.|.+.+|..+ .+|..+ ..+|+.|+++.|
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~l----p--~~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARI----D--NLISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcccccCcchHhheecccccccccccc----c--cccCCcccEEEecCCCcc-cCcccc--cccCcEEEeccc
Confidence 21000 00011222 2455554432211111110 0 012368999999999644 456543 368999999876
Q ss_pred c
Q 048084 941 P 941 (967)
Q Consensus 941 ~ 941 (967)
.
T Consensus 188 ~ 188 (426)
T PRK15386 188 Q 188 (426)
T ss_pred c
Confidence 4
No 193
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.28 E-value=1.1e-05 Score=89.42 Aligned_cols=124 Identities=23% Similarity=0.290 Sum_probs=93.3
Q ss_pred cEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc-
Q 048084 540 KILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN- 618 (967)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~- 618 (967)
.+...++..|....+. ..+.-++.|++|+|++|++... ..+..|++|++|||+ + |.+..+|.-
T Consensus 165 ~L~~a~fsyN~L~~mD----~SLqll~ale~LnLshNk~~~v-----~~Lr~l~~LkhLDls-----y--N~L~~vp~l~ 228 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMD----ESLQLLPALESLNLSHNKFTKV-----DNLRRLPKLKHLDLS-----Y--NCLRHVPQLS 228 (1096)
T ss_pred hHhhhhcchhhHHhHH----HHHHHHHHhhhhccchhhhhhh-----HHHHhcccccccccc-----c--chhccccccc
Confidence 5556666777665444 4667789999999999984322 258899999999999 5 667667632
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccC--ccccccccccEEecCCCcc
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELP--QGIGKLRKLMYLYNDRTES 683 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~l~~~~~ 683 (967)
...+ +|+.|+|++|. ++.+-. +.+|.+|+.||+++|- +.... .-++.|..|+.|+|.+|+.
T Consensus 229 ~~gc-~L~~L~lrnN~-l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 229 MVGC-KLQLLNLRNNA-LTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhh-hheeeeecccH-HHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 2233 49999999998 888865 8899999999999987 43321 2367788999999999853
No 194
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.009 Score=69.56 Aligned_cols=135 Identities=15% Similarity=0.286 Sum_probs=82.8
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccC---CceEEEEecCCCCHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF---DERIWVCVSDPFDEFR 250 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~ 250 (967)
..++|.+..++.+.+.+..... ..+....+....|+.|||||.||+.++.. -| +..+-++.|+.....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~EkH- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYMEKH- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHHHH-
Confidence 4578999999999998854321 12334568888999999999999988874 33 344555544432222
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcc-eEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEE
Q 048084 251 IAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKL-LLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILI 318 (967)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~-LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ili 318 (967)
-+..|-+..++-...++ .-.+-+..+.++| ++.||++.-.+.+-..-+...+.++. ..+-||.
T Consensus 565 ----sVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 565 ----SVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred ----HHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 22233333222211111 1223344456677 88899998877777777888777652 3455666
Q ss_pred ecCC
Q 048084 319 TTRK 322 (967)
Q Consensus 319 Ttr~ 322 (967)
||.-
T Consensus 640 TSN~ 643 (786)
T COG0542 640 TSNA 643 (786)
T ss_pred eccc
Confidence 7763
No 195
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.27 E-value=0.0053 Score=70.63 Aligned_cols=187 Identities=12% Similarity=0.129 Sum_probs=96.5
Q ss_pred CCCccccchhhHHHHHHHHh---cCCC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 175 DESEIFGREDEKNDLVNRLI---CEGS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~---~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
.-.+++|-++..+++.+.+. .+.. .....++-+.++|++|+|||++|+.+++.. .. -++.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~-----~~~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GV-----PFFSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CC-----CeeeccH----
Confidence 34468898776666655443 1100 011234568999999999999999998752 11 1232221
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC----------hhhHHH----HHhhhcC--CCC
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN----------FYKWEQ----FNNCLKN--CLH 312 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~----------~~~~~~----l~~~l~~--~~~ 312 (967)
.++... ... .....+...+.......+.+|++|+++... ...+.. +...+.. ...
T Consensus 122 ~~~~~~----~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFVEM----FVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHHH----Hhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111111 100 111223333444444567899999995421 111222 2222221 123
Q ss_pred CcEEEEecCChh-HHhhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCC-hhHHHHH
Q 048084 313 GSKILITTRKEA-IARIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGL-PLAAKTI 386 (967)
Q Consensus 313 gs~iliTtr~~~-v~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 386 (967)
+..||.||.... +...+ .....+.++..+.++..++++.+...... ....+ ...+++.+.|. +-.|..+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGFSGADLANL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCCCHHHHHHH
Confidence 445555665532 22211 22457889998999999999887643221 11111 34677777763 3333333
No 196
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.27 E-value=0.01 Score=66.88 Aligned_cols=174 Identities=14% Similarity=0.121 Sum_probs=108.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcc---cc---ccCCceEEEEecCCCCHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGD---VK---KYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~---~~---~~f~~~~wv~~~~~~~~~ 249 (967)
+..+-+|+.+..+|...+...=. .++....+.|.|.+|.|||..+..|.+... .+ ..| ..+.|+.-.-....
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHH
Confidence 34467899999999988865433 124556999999999999999999998522 11 123 23455555566789
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhc-----cCcceEeecCCCCCChhhHHHHHhhhcCC-CCCcEEEEecCC-
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHVA-----RKKLLLVLDDVWNENFYKWEQFNNCLKNC-LHGSKILITTRK- 322 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iliTtr~- 322 (967)
+++..|...+.+.. ..+....+.+..++. .+..++++|+++..-...-+.+..++.+. .++||++|-+-.
T Consensus 473 ~~Y~~I~~~lsg~~---~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGER---VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCc---ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 99999999987643 234455555655553 34678888987432111123455555543 467776654322
Q ss_pred -hhHH---------hhhCCcceeecCCCChhhHHHHHHHHhcC
Q 048084 323 -EAIA---------RIMGSIDIISINVLSEIECWSVFELLAFS 355 (967)
Q Consensus 323 -~~v~---------~~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 355 (967)
.... ..++ ...+...|-+.++-.++...+..+
T Consensus 550 TmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred cccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcc
Confidence 1111 1111 235667777777777777666543
No 197
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.00021 Score=71.02 Aligned_cols=88 Identities=20% Similarity=0.250 Sum_probs=59.6
Q ss_pred cCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCcc--ccc
Q 048084 563 KGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIE--KLP 640 (967)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~--~lp 640 (967)
..++.++.|+|.+|.++.... ....+.+++.|++|+|+.|.+. ..|..+| -.+.+|+.|-|.++. +. ..-
T Consensus 68 ~~~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls~N~L~---s~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~ 139 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLSCNSLS---SDIKSLP---LPLKNLRVLVLNGTG-LSWTQST 139 (418)
T ss_pred HHhhhhhhhhcccchhccHHH-HHHHHhcCccceEeeccCCcCC---CccccCc---ccccceEEEEEcCCC-CChhhhh
Confidence 457788889999888665544 4556788899999999733321 2233343 356788888888776 33 344
Q ss_pred hHHhccCCCCEEecCCCC
Q 048084 641 ETLCELYNLERLNVSGCR 658 (967)
Q Consensus 641 ~~~~~l~~L~~L~L~~~~ 658 (967)
..+..++.++.|+++.|.
T Consensus 140 s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhhcchhhhhhhhccch
Confidence 556778888888888774
No 198
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.25 E-value=0.00048 Score=66.67 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=53.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
...-+.|+|.+|+|||.||..+.+... ..=..+.|+.+ .+++..+ .... .....++. +.+ +.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~~v~f~~~------~~L~~~l----~~~~-~~~~~~~~---~~~-l~- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGYSVLFITA------SDLLDEL----KQSR-SDGSYEEL---LKR-LK- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEH------HHHHHHH----HCCH-CCTTHCHH---HHH-HH-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCcceeEeec------Cceeccc----cccc-cccchhhh---cCc-cc-
Confidence 345799999999999999988887522 22234667753 3444443 2221 11222232 222 22
Q ss_pred CcceEeecCCCCCChhhHHH--HHhhhcCC-CCCcEEEEecCC
Q 048084 283 KKLLLVLDDVWNENFYKWEQ--FNNCLKNC-LHGSKILITTRK 322 (967)
Q Consensus 283 ~r~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iliTtr~ 322 (967)
+-=||||||+.......|.. +...+..- .++ .+||||..
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 34588999997765444443 22222211 123 58889885
No 199
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.25 E-value=0.013 Score=70.65 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=71.5
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..++|.++.++.|.+.+..... ..+....++.++|+.|+|||+||+.+++. . +...+.++.++..+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 3578999999999888864211 01122356889999999999999999884 2 23445666554322111
Q ss_pred HHHHHhccCCC--CCCChHHHHHHHHHHhccC-cceEeecCCCCCChhhHHHHHhhhcCC
Q 048084 254 AIIEALTDSAS--NFGEFQSLMQRIQKHVARK-KLLLVLDDVWNENFYKWEQFNNCLKNC 310 (967)
Q Consensus 254 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~-r~LlvlDdv~~~~~~~~~~l~~~l~~~ 310 (967)
+...++.... +......+ .+.++.+ .-+++||+++..+.+.+..+...+..+
T Consensus 526 -~~~lig~~~gyvg~~~~~~l----~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred -HHHHhcCCCCCcccchhhHH----HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 1111221111 11111222 3333333 459999999887777777777776543
No 200
>PTZ00494 tuzin-like protein; Provisional
Probab=97.24 E-value=0.029 Score=59.91 Aligned_cols=170 Identities=17% Similarity=0.172 Sum_probs=105.4
Q ss_pred CCCCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHH
Q 048084 171 ISSIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFR 250 (967)
Q Consensus 171 ~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (967)
..+...+.+|.|+++-..+.+.|.+.+ ...++++++.|.-|.|||+|.+.+...+.+ ..++|++.. .++
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg---~ED 433 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGG---TED 433 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecC---Ccc
Confidence 344567789999999999999987664 357899999999999999999988875332 357888875 455
Q ss_pred HHHHHHHHhccCCCCC--CChHHHHHHHH---HHhccCcceEeec--CCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh
Q 048084 251 IAKAIIEALTDSASNF--GEFQSLMQRIQ---KHVARKKLLLVLD--DVWNENFYKWEQFNNCLKNCLHGSKILITTRKE 323 (967)
Q Consensus 251 ~~~~i~~~l~~~~~~~--~~~~~~~~~l~---~~l~~~r~LlvlD--dv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~ 323 (967)
-++.+.+.++.+..+. +-++-+.+..+ ....++.-+||+- +-.+. ..-+.+.. .+.....-++|++----+
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL-~RVYnE~v-aLacDrRlCHvv~EVplE 511 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDL-GRVYGEVV-SLVSDCQACHIVLAVPMK 511 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcH-HHHHHHHH-HHHccchhheeeeechHh
Confidence 6778888888654322 11222222222 2234555566653 22111 01111111 233334566777654433
Q ss_pred hHHhh---hCCcceeecCCCChhhHHHHHHHHh
Q 048084 324 AIARI---MGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 324 ~v~~~---~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
.+... +.....|.+++|+.++|.++.++..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 32221 1224588999999999999987653
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.23 E-value=0.0017 Score=68.65 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=72.4
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhc
Q 048084 181 GREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALT 260 (967)
Q Consensus 181 GR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 260 (967)
+|....+...+++..-.. ....+-+.|+|..|+|||.||..+++... ..-..+.|+++ .+++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEH------HHHHHHHHHHHh
Confidence 555556656666543221 12346799999999999999999998733 22234566654 345555554442
Q ss_pred cCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHH--HHhhh-cCC-CCCcEEEEecCC
Q 048084 261 DSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQ--FNNCL-KNC-LHGSKILITTRK 322 (967)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iliTtr~ 322 (967)
. .+..+. +.. + .+-=||||||+.......|.. +...+ ..- ..+-.+|+||.-
T Consensus 205 ~-----~~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 122222 222 2 246699999998766666753 44433 211 245568999884
No 202
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.23 E-value=0.0012 Score=63.43 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=65.6
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccC-CceEEEEecCCCCHHHHH
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF-DERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~ 252 (967)
..-.++||-++.++++.-.-. .++.+-+.|.||+|+||||-+..+++.. ....| +++.-.++|....+.-+-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGIDvVR 96 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGIDVVR 96 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccccHHHH
Confidence 344679999999999876664 3456788999999999999887777641 12222 455555555544433332
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHh-------ccCcceEeecCCCCCChhhHHHHHhhh
Q 048084 253 KAIIEALTDSASNFGEFQSLMQRIQKHV-------ARKKLLLVLDDVWNENFYKWEQFNNCL 307 (967)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-------~~~r~LlvlDdv~~~~~~~~~~l~~~l 307 (967)
..++.+. .++.-++|||.+++.....-..++..+
T Consensus 97 ---------------------n~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtM 137 (333)
T KOG0991|consen 97 ---------------------NKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTM 137 (333)
T ss_pred ---------------------HHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHH
Confidence 2232222 245568999999775433333344433
No 203
>PRK08181 transposase; Validated
Probab=97.22 E-value=0.00096 Score=68.84 Aligned_cols=101 Identities=21% Similarity=0.095 Sum_probs=56.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKK 284 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r 284 (967)
.-+.|+|++|+|||.||..+.+.. ......++|++ ..+++..+..... ....++... . + .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~---~-l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVARR-----ELQLESAIA---K-L-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHHh-----CCcHHHHHH---H-H-hcC
Confidence 459999999999999999988752 22233456664 3445555533221 112222222 2 2 234
Q ss_pred ceEeecCCCCCChhhHH--HHHhhhcCCCCCcEEEEecCCh
Q 048084 285 LLLVLDDVWNENFYKWE--QFNNCLKNCLHGSKILITTRKE 323 (967)
Q Consensus 285 ~LlvlDdv~~~~~~~~~--~l~~~l~~~~~gs~iliTtr~~ 323 (967)
=|||+||+.......|. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999654333332 3444443211123599998853
No 204
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.21 E-value=0.0037 Score=63.83 Aligned_cols=173 Identities=17% Similarity=0.204 Sum_probs=98.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH-HHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE-FRIAKAI 255 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i 255 (967)
..++|-.++...+-.++....- .+...-|.|+|+.|.|||+|...+..+ .+..=+..+-|........ .-.++.|
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 4578988888888888754321 234456889999999999999777765 2222233344555443322 2234444
Q ss_pred HHHh----ccCCCCCCChHHHHHHHHHHhcc------CcceEeecCCCCCChhh-HHHHHhhhc---C-CCCCcEEEEec
Q 048084 256 IEAL----TDSASNFGEFQSLMQRIQKHVAR------KKLLLVLDDVWNENFYK-WEQFNNCLK---N-CLHGSKILITT 320 (967)
Q Consensus 256 ~~~l----~~~~~~~~~~~~~~~~l~~~l~~------~r~LlvlDdv~~~~~~~-~~~l~~~l~---~-~~~gs~iliTt 320 (967)
.+++ ........+..+....+-..|+. -+.++|+|+++-..... -.-+...+. . ..+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 4444 33322333444445555555532 26788888775321111 011222222 1 13455667899
Q ss_pred CChh-------HHhhhCCcceeecCCCChhhHHHHHHHHh
Q 048084 321 RKEA-------IARIMGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 321 r~~~-------v~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
|-.- |-..+....++-++.++-++...+++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9642 33333333456677888889988888765
No 205
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.006 Score=67.20 Aligned_cols=190 Identities=17% Similarity=0.203 Sum_probs=103.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCC------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSK------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
-.++=|.+..+.++.+.+...... .-..++-|.+||++|+|||.||+.++++. . +-|+.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~-----vPf~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--G-----VPFLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--C-----CceEeecch----
Confidence 345778898888888877542210 12356789999999999999999999972 2 233444322
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC------hhhHH-----HHHhhhcCC----CCCc
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN------FYKWE-----QFNNCLKNC----LHGS 314 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~------~~~~~-----~l~~~l~~~----~~gs 314 (967)
+|+....+ ++.+.+.+.+.+.-..-++++++|+++-.. ..+++ ++...+... ..|-
T Consensus 258 ----eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 22222221 223344444455556679999999985321 11111 222222211 1233
Q ss_pred EEEE---ecCChhHHhhhC----CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCC----hhHH
Q 048084 315 KILI---TTRKEAIARIMG----SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGL----PLAA 383 (967)
Q Consensus 315 ~ili---Ttr~~~v~~~~~----~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~----Plai 383 (967)
.||| |+|...+...+. ...-|.|.--++.+-.++++..+.+..... .-+ .++|++..-|. -.|+
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d----~~qlA~lTPGfVGADL~AL 403 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFD----FKQLAKLTPGFVGADLMAL 403 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcC----HHHHHhcCCCccchhHHHH
Confidence 3443 566544433322 244677777777777778877665443322 222 34555554443 3444
Q ss_pred HHHHHHH
Q 048084 384 KTIASLL 390 (967)
Q Consensus 384 ~~~~~~l 390 (967)
...|+..
T Consensus 404 ~~~Aa~v 410 (802)
T KOG0733|consen 404 CREAAFV 410 (802)
T ss_pred HHHHHHH
Confidence 4444443
No 206
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.0027 Score=68.07 Aligned_cols=178 Identities=10% Similarity=0.004 Sum_probs=100.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcc---ccc-----cCCceEEEEecCCCCHHHHHHHHH
Q 048084 185 EKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGD---VKK-----YFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~---~~~-----~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
.-+++.+.+.. +.-.....++|+.|+||+++|..++...- ... .....-++......|...+
T Consensus 10 ~~~~l~~~~~~-----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQA-----GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHc-----CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 44566666643 23467888999999999999977665310 000 0000001111111111100
Q ss_pred HHhccCCC-CCCChHHHHHHHHHHh----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hHHhh-h
Q 048084 257 EALTDSAS-NFGEFQSLMQRIQKHV----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AIARI-M 329 (967)
Q Consensus 257 ~~l~~~~~-~~~~~~~~~~~l~~~l----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~-~ 329 (967)
..... ....+++..+..+..- .+++-++|+|+++.........+...+.....++.+|++|.+. .+... .
T Consensus 80 ---~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ---ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00000 1123344333222211 3567799999998877777778888887766677777666653 33322 2
Q ss_pred CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHH
Q 048084 330 GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAK 384 (967)
Q Consensus 330 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 384 (967)
.....+.+.+++.+++.+.+.+.. + . + .+.+..++..++|.|....
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~----~-~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T----M-S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C----C-C---HHHHHHHHHHcCCCHHHHH
Confidence 335678999999999988886532 1 1 1 1226678999999996443
No 207
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.00016 Score=84.76 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=78.6
Q ss_pred CCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHh
Q 048084 565 LRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLC 644 (967)
Q Consensus 565 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~ 644 (967)
-.+|++|++++.... ........-..||.|+.|.+++..+. ..++..-..++++|+.||+|+++ ++.+ ..++
T Consensus 121 r~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~-----~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFD-----NDDFSQLCASFPNLRSLDISGTN-ISNL-SGIS 192 (699)
T ss_pred HHhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceec-----chhHHHHhhccCccceeecCCCC-ccCc-HHHh
Confidence 468999999887642 23333444578899999999832221 12233335679999999999999 8888 5599
Q ss_pred ccCCCCEEecCCCCCCcccC--ccccccccccEEecCCCc
Q 048084 645 ELYNLERLNVSGCRNLRELP--QGIGKLRKLMYLYNDRTE 682 (967)
Q Consensus 645 ~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~l~~~~ 682 (967)
.|++|+.|.+++=. +..-+ ..+.+|++|+.||+|...
T Consensus 193 ~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccc
Confidence 99999999998754 33221 357889999999999863
No 208
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.17 E-value=0.0048 Score=75.19 Aligned_cols=138 Identities=14% Similarity=0.203 Sum_probs=77.4
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..++|.+..++.|...+..... ..+....++.++|+.|+|||++|+.+++.. -..-...+.++++.....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~~----- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFMEK----- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhhh-----
Confidence 4688999999999998864321 011123578899999999999999988742 111223445554432111
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhcc-CcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecC
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVAR-KKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTR 321 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr 321 (967)
.....+-+..+.....++ ...+...++. ..-+|+||++...+...+..+...+..+. ..+-||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112222222111111111 1112233322 33599999998777777777777775431 2233777877
Q ss_pred C
Q 048084 322 K 322 (967)
Q Consensus 322 ~ 322 (967)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.15 E-value=0.0022 Score=65.10 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=59.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.++|.+|+|||+||..+++... ..-..+++++ ..+++..+-..... .....++ +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 45789999999999999999998632 2234556664 34455544433321 1111222 222333 3
Q ss_pred cceEeecCCCCCChhhHHH--HHhhhcCC-CCCcEEEEecCC
Q 048084 284 KLLLVLDDVWNENFYKWEQ--FNNCLKNC-LHGSKILITTRK 322 (967)
Q Consensus 284 r~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iliTtr~ 322 (967)
.=+||+||+.......|.. +...+..- ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 5589999997765556664 33333321 123358888874
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.014 Score=62.56 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=64.6
Q ss_pred cCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-hhHHhh-hCCcceeecCCCChhhHHHHHHHHhcCCCCC
Q 048084 282 RKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-EAIARI-MGSIDIISINVLSEIECWSVFELLAFSGKSM 359 (967)
Q Consensus 282 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-~~v~~~-~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 359 (967)
+++-++|+|+++......+..+...+.....++.+|++|.+ ..+... ......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 44568999999988888888888888876677766655554 333322 2335689999999999999887641 1
Q ss_pred ccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 360 EERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 360 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
. + ...++..++|.|.....+
T Consensus 206 ~--~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A--D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C--h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 223577889999755443
No 211
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.12 E-value=0.022 Score=61.97 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=34.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcc
Q 048084 182 REDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGD 229 (967)
Q Consensus 182 R~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~ 229 (967)
|+...+.|.+.+...+ ...+.+|+|.|.=|+|||++.+.+.+...
T Consensus 1 ~~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred ChHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455677778776543 14778999999999999999999887633
No 212
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.11 E-value=0.0014 Score=65.70 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=29.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEe
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCV 242 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 242 (967)
.-.++|+|..|+|||||+..+..+ ....|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 346889999999999999888876 6678877666643
No 213
>PRK06526 transposase; Provisional
Probab=97.10 E-value=0.0011 Score=68.17 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=54.5
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.|+|++|+|||+||..+..... ...+ .+.|+ +..+++..+..... . .. ....+.+. .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~----~-~~---~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHH----A-GR---LQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHh----c-Cc---HHHHHHHh--cc
Confidence 34689999999999999998877522 1222 33443 33444444433211 1 11 12223322 23
Q ss_pred cceEeecCCCCCChhhHH--HHHhhhcCC-CCCcEEEEecCCh
Q 048084 284 KLLLVLDDVWNENFYKWE--QFNNCLKNC-LHGSKILITTRKE 323 (967)
Q Consensus 284 r~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iliTtr~~ 323 (967)
.-+||+||+.......+. .+...+... ..++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 569999999754322222 244444321 2344 88888854
No 214
>PRK04296 thymidine kinase; Provisional
Probab=97.09 E-value=0.0013 Score=64.85 Aligned_cols=112 Identities=12% Similarity=0.022 Sum_probs=62.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCC--CCChHHHHHHHHHHhcc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASN--FGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 282 (967)
.++.|+|+.|.||||+|..++.. ...+-..++.+. ..++.......++++++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57899999999999999777764 222223334342 1112222233445555432211 2334455555555 333
Q ss_pred CcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh
Q 048084 283 KKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE 323 (967)
Q Consensus 283 ~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~ 323 (967)
+.-++|+|.++..+.+...++...+. ..|..||+|.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 45589999997543332333444433 3577899998863
No 215
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.07 E-value=0.00084 Score=62.34 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=65.7
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccc-cccCCceEEEEecCCCCHHHHHHHHHHH
Q 048084 180 FGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDV-KKYFDERIWVCVSDPFDEFRIAKAIIEA 258 (967)
Q Consensus 180 vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 258 (967)
||+...++++.+.+..-.. ....|.|+|..|+||+++|+.++..... ...|.. +.+... .
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~-~----------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASL-P----------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCT-C-----------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhC-c-----------
Confidence 5788888888888765432 4467899999999999999988875221 112211 111110 0
Q ss_pred hccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCC-CCCcEEEEecCC
Q 048084 259 LTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNC-LHGSKILITTRK 322 (967)
Q Consensus 259 l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iliTtr~ 322 (967)
.+.+.+ .+.--|+++|++.........+...+... ....|+|.||+.
T Consensus 62 --------------~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 --------------AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp --------------HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred --------------HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111111 24556889999887666666777777643 567799999885
No 216
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.04 E-value=0.00072 Score=66.09 Aligned_cols=131 Identities=21% Similarity=0.200 Sum_probs=62.3
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC---------CHHH-
Q 048084 181 GREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF---------DEFR- 250 (967)
Q Consensus 181 GR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~---------~~~~- 250 (967)
.+..+.....+.|. ...++.+.|++|.|||.||...+-+.-..+.|+.++++.-.-.. +..+
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 45566667777776 23589999999999999997776654445778877776421110 0000
Q ss_pred ---HHHHHHHHhccCCCCCCChHHHHHHH------HHHhccC---cceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEE
Q 048084 251 ---IAKAIIEALTDSASNFGEFQSLMQRI------QKHVARK---KLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILI 318 (967)
Q Consensus 251 ---~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~~---r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ili 318 (967)
.+..+...+..-. .....+.+.+.= ..+++++ ..++|+|++++.....+ +..+-..+.+||+|+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~---k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEEL---KMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHH---HHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHH---HHHHcccCCCcEEEE
Confidence 0111111111110 111222221100 0123444 45999999988765444 444555567999999
Q ss_pred ecCCh
Q 048084 319 TTRKE 323 (967)
Q Consensus 319 Ttr~~ 323 (967)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 86643
No 217
>PRK06921 hypothetical protein; Provisional
Probab=97.03 E-value=0.0033 Score=65.30 Aligned_cols=99 Identities=21% Similarity=0.312 Sum_probs=55.9
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCcccccc-CCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKY-FDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
...+.++|..|+|||+||..+++. +... -..++|++.. +++..+...+ +.....+.. + .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~-~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNR-M-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHHH-h-c
Confidence 467999999999999999999986 3222 3456777642 3333332221 111122222 2 2
Q ss_pred CcceEeecCCCC-----CChhhHHH--HHhhhcCC-CCCcEEEEecCC
Q 048084 283 KKLLLVLDDVWN-----ENFYKWEQ--FNNCLKNC-LHGSKILITTRK 322 (967)
Q Consensus 283 ~r~LlvlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~iliTtr~ 322 (967)
+-=||||||+.. +....|.. +...+..- ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 356999999932 22234443 44433321 124458888884
No 218
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.03 E-value=0.0028 Score=76.98 Aligned_cols=137 Identities=19% Similarity=0.268 Sum_probs=78.4
Q ss_pred CCccccchhhHHHHHHHHhcCCC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (967)
...++|.+..++.+.+.+..... ..+....++.++|+.|+|||.||+.+++. .-+.....+-++++...+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~--- 639 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH--- 639 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh---
Confidence 34689999999999999864211 01223457899999999999999888764 21111222333333211111
Q ss_pred HHHHHHhccCCCCC---CChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEE
Q 048084 253 KAIIEALTDSASNF---GEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILI 318 (967)
Q Consensus 253 ~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ili 318 (967)
.+ ..+-+..+.. .+...+...+++ ...-+|+||++...+...+..+...+..+. ..+-||+
T Consensus 640 -~~-~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 640 -TV-SRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred -hh-ccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 11 1121111111 111223333332 446699999998777777777777776542 4556777
Q ss_pred ecCC
Q 048084 319 TTRK 322 (967)
Q Consensus 319 Ttr~ 322 (967)
||..
T Consensus 715 TSNl 718 (852)
T TIGR03345 715 TSNA 718 (852)
T ss_pred eCCC
Confidence 7764
No 219
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.00068 Score=63.92 Aligned_cols=61 Identities=28% Similarity=0.271 Sum_probs=25.5
Q ss_pred cccCCCCcEEEccCCCCccccchHHh-ccCCCCEEecCCCCCCcccC--ccccccccccEEecCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLC-ELYNLERLNVSGCRNLRELP--QGIGKLRKLMYLYNDRT 681 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~-~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~l~~~ 681 (967)
+..++.|.+|.|++|. |+.+...+. .+++|+.|.|.+|. +..+- ..+..+++|++|.+-+|
T Consensus 60 lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCC
Confidence 3344445555554444 444433222 23345555554444 33221 11333444444444444
No 220
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.98 E-value=0.0012 Score=62.39 Aligned_cols=102 Identities=25% Similarity=0.265 Sum_probs=70.6
Q ss_pred CCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccccccc-CCCCcEEEccCCCCccccch--H
Q 048084 566 RGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEK-LLHLKYLNLFCQREIEKLPE--T 642 (967)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~-l~~L~~L~Ls~~~~i~~lp~--~ 642 (967)
...-.++|++|+.. . ++ .|..++.|..|.|+ + |.|..+...+.. +++|..|.|.+|+ |.++.+ -
T Consensus 42 d~~d~iDLtdNdl~---~-l~-~lp~l~rL~tLll~-----n--NrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p 108 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR---K-LD-NLPHLPRLHTLLLN-----N--NRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP 108 (233)
T ss_pred cccceecccccchh---h-cc-cCCCccccceEEec-----C--CcceeeccchhhhccccceEEecCcc-hhhhhhcch
Confidence 34566778887732 2 12 26778888888887 5 777777655654 5678888888888 776653 3
Q ss_pred HhccCCCCEEecCCCCCCcccCc----cccccccccEEecCCC
Q 048084 643 LCELYNLERLNVSGCRNLRELPQ----GIGKLRKLMYLYNDRT 681 (967)
Q Consensus 643 ~~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~l~~~ 681 (967)
+..|+.|++|.+-+|+ ++.-+. .+..+++|+.|+..+-
T Consensus 109 La~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 6678888888888887 554432 3677888888887653
No 221
>PRK09183 transposase/IS protein; Provisional
Probab=96.94 E-value=0.0033 Score=65.07 Aligned_cols=101 Identities=22% Similarity=0.215 Sum_probs=53.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.|+|++|+|||+||..+...... .-..+.|++ ..++...+...... .. ....+.+.+ .+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~ 164 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MA 164 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cC
Confidence 346889999999999999988764221 122344553 23343333222111 11 112222222 34
Q ss_pred cceEeecCCCCCChhhHH--HHHhhhcCC-CCCcEEEEecCC
Q 048084 284 KLLLVLDDVWNENFYKWE--QFNNCLKNC-LHGSKILITTRK 322 (967)
Q Consensus 284 r~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iliTtr~ 322 (967)
.-++|+||++......+. .+...+... ..++ +||||..
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 569999999753322222 344444221 2344 8888885
No 222
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.94 E-value=0.0057 Score=65.19 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=66.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCc-eEEEEecC-CCCHHHHHHHHHHHhcc
Q 048084 184 DEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDE-RIWVCVSD-PFDEFRIAKAIIEALTD 261 (967)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~ 261 (967)
....++++.+..-. ....+.|+|.+|+|||||++.+++... ..+.+. ++|+.+.+ ..++.++.+.+...+..
T Consensus 118 ~~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 118 DLSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred chhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 35566888886432 345779999999999999999887521 223344 36666654 46778888888877665
Q ss_pred CCCCCCChHH-----HHHHHHHHh--ccCcceEeecCC
Q 048084 262 SASNFGEFQS-----LMQRIQKHV--ARKKLLLVLDDV 292 (967)
Q Consensus 262 ~~~~~~~~~~-----~~~~l~~~l--~~~r~LlvlDdv 292 (967)
...+...... ....+.+.+ .+++.+||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 4333222221 111222222 588999999999
No 223
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.024 Score=61.48 Aligned_cols=131 Identities=21% Similarity=0.168 Sum_probs=75.1
Q ss_pred CCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 048084 201 QKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV 280 (967)
Q Consensus 201 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (967)
......+.+.|++|+|||+||..++.. ..|..+--++-.......+- .....+...+....
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~sEs---------------aKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGLSES---------------AKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCccHH---------------HHHHHHHHHHHHhh
Confidence 346778889999999999999998874 45654433322111111100 11122333344444
Q ss_pred ccCcceEeecCCCCCChhhHH------------HHHhhhcCC-CCCcE--EEEecCChhHHhhhCC----cceeecCCCC
Q 048084 281 ARKKLLLVLDDVWNENFYKWE------------QFNNCLKNC-LHGSK--ILITTRKEAIARIMGS----IDIISINVLS 341 (967)
Q Consensus 281 ~~~r~LlvlDdv~~~~~~~~~------------~l~~~l~~~-~~gs~--iliTtr~~~v~~~~~~----~~~~~l~~l~ 341 (967)
+..--.+|+||+... -+|. .+.-++... ..|-| |+-||....+.+.|+. ...|.++.++
T Consensus 596 kS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 566779999999432 1221 122222221 13334 4446766777777654 4588999998
Q ss_pred h-hhHHHHHHHH
Q 048084 342 E-IECWSVFELL 352 (967)
Q Consensus 342 ~-~~~~~l~~~~ 352 (967)
. ++..+.+...
T Consensus 674 ~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 674 TGEQLLEVLEEL 685 (744)
T ss_pred chHHHHHHHHHc
Confidence 7 7777777653
No 224
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.0062 Score=66.36 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=82.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc-------------------cCCceE
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK-------------------YFDERI 238 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 238 (967)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+...-.. ...-+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677788888888886433 1345699999999999999988887521000 112333
Q ss_pred EEEecCCCC---HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcE
Q 048084 239 WVCVSDPFD---EFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSK 315 (967)
Q Consensus 239 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ 315 (967)
.+..+.... ..+..+++.+....... .++.-++|+|+++....+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444333332 12222222222211100 24577999999987665555667776666667778
Q ss_pred EEEecCCh-hHHhhh-CCcceeecCC
Q 048084 316 ILITTRKE-AIARIM-GSIDIISINV 339 (967)
Q Consensus 316 iliTtr~~-~v~~~~-~~~~~~~l~~ 339 (967)
+|++|... .+...+ .....+++.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88887743 222211 2244666766
No 225
>PRK08118 topology modulation protein; Reviewed
Probab=96.93 E-value=0.00047 Score=66.13 Aligned_cols=35 Identities=34% Similarity=0.577 Sum_probs=27.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccc-ccCCceEE
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVK-KYFDERIW 239 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 239 (967)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999864433 45666665
No 226
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.92 E-value=0.00091 Score=70.83 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=41.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+++|.++.++++++++...........++++|+|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997654322345689999999999999999998875
No 227
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.92 E-value=0.012 Score=55.30 Aligned_cols=125 Identities=20% Similarity=0.228 Sum_probs=71.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecC--------------------------------------
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSD-------------------------------------- 244 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-------------------------------------- 244 (967)
....+.|+|++|.||||+.+.+|...+. =.+.+|+.--+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 4468999999999999999999986331 12333432100
Q ss_pred ----CCCHHHHHHHHHHHh---ccC------CCCCCChHHHHHHHHHHhccCcceEeecCCC-CCCh-hhHHHHHhhhcC
Q 048084 245 ----PFDEFRIAKAIIEAL---TDS------ASNFGEFQSLMQRIQKHVARKKLLLVLDDVW-NENF-YKWEQFNNCLKN 309 (967)
Q Consensus 245 ----~~~~~~~~~~i~~~l---~~~------~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~-~~~~-~~~~~l~~~l~~ 309 (967)
.....++-+.+.+.+ +.. ......-++..-.|.+.+-+++-+|+-|+-- +.+. -.|+-+.-+-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 011222222222222 211 1112223344455677777889999999541 1121 345544433333
Q ss_pred CCCCcEEEEecCChhHHhhhC
Q 048084 310 CLHGSKILITTRKEAIARIMG 330 (967)
Q Consensus 310 ~~~gs~iliTtr~~~v~~~~~ 330 (967)
...|+-||++|.+.++...+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 457999999999988877654
No 228
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.0039 Score=69.52 Aligned_cols=189 Identities=16% Similarity=0.127 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
+++||.+.....|...+... .-...-...|+-|+||||+|+-++.-.--.. + ...+++..-..-++|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 46799999999999999643 2345567899999999999988876311110 0 1111122111112222
Q ss_pred HHhc-----cCCCCCCChHHHHHHHHHHh----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hHH
Q 048084 257 EALT-----DSASNFGEFQSLMQRIQKHV----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AIA 326 (967)
Q Consensus 257 ~~l~-----~~~~~~~~~~~~~~~l~~~l----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v~ 326 (967)
..-. .+......+++..+.+.+.. .++.-+.|+|+|+......|..+..-+.......+.|+.|++. .+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 1100 00001112333333222222 3455599999998887788888887776555555666655553 333
Q ss_pred h-hhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChh
Q 048084 327 R-IMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPL 381 (967)
Q Consensus 327 ~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 381 (967)
. .......+.+..++.++-...+...+....-. ...+...-|++..+|...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~----~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN----IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCc----cCHHHHHHHHHHcCCChh
Confidence 2 23446789999999999888888876443322 223345667777777554
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.015 Score=62.28 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=58.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC-CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF-DEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
+.++|+|+|++|+||||++..++.... ..=..+..++..... ...+-++..++.++.......+..++...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 458999999999999999988876422 221245566655432 12223333334444332222344555555544322
Q ss_pred c-CcceEeecCCCCCC--hhhHHHHHhhhcC
Q 048084 282 R-KKLLLVLDDVWNEN--FYKWEQFNNCLKN 309 (967)
Q Consensus 282 ~-~r~LlvlDdv~~~~--~~~~~~l~~~l~~ 309 (967)
. +.=++++|-..... ...+..+...+..
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhh
Confidence 1 23578889875432 2335556555543
No 230
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.86 E-value=0.0083 Score=72.61 Aligned_cols=181 Identities=16% Similarity=0.107 Sum_probs=94.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
-.++.|.++.+++|.+.+..+-.. .-...+.+.|+|++|+|||+||+.+++. ....| +.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH-----
Confidence 345889999999998877432100 0123467899999999999999999885 22221 223221
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC-----------hhhHHHHHhhhcCC-CCCcEE
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN-----------FYKWEQFNNCLKNC-LHGSKI 316 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~i 316 (967)
++... . . ......+...+.......+.+|++|+++... ......+...+... ..+..+
T Consensus 247 -~i~~~----~----~-g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIMSK----Y----Y-GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHhcc----c----c-cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11100 0 0 0111222233333334567899999984311 01122344444322 223344
Q ss_pred EE-ecCChh-HHhhhC----CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChh
Q 048084 317 LI-TTRKEA-IARIMG----SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPL 381 (967)
Q Consensus 317 li-Ttr~~~-v~~~~~----~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 381 (967)
+| ||.... +...+. ....+.++..+.++..+++......... .... ....+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cccc----CHHHHHHhCCCCCH
Confidence 44 444322 222111 1346778888888888888865432211 1111 14567777777643
No 231
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.83 E-value=0.031 Score=60.21 Aligned_cols=131 Identities=12% Similarity=0.122 Sum_probs=70.9
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHH
Q 048084 179 IFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEA 258 (967)
Q Consensus 179 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 258 (967)
++|+...+.++.+.+..... ....|.|+|..|+||+++|+.+.....- .-...+-|++.... .+.+...+
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~--~~~l~~~l-- 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALS--ENLLDSEL-- 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCC--hHHHHHHH--
Confidence 47888888888888765442 3456899999999999999988864211 11223445555322 22222211
Q ss_pred hccCCCCCCChHH-HHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecCC
Q 048084 259 LTDSASNFGEFQS-LMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTRK 322 (967)
Q Consensus 259 l~~~~~~~~~~~~-~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr~ 322 (967)
++........... ....+. ....-.|+||++..........+...+.... ...+||.||..
T Consensus 71 fG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred hccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 1111000000000 000011 1234568999998766555566666664432 23478877754
No 232
>PRK04132 replication factor C small subunit; Provisional
Probab=96.80 E-value=0.032 Score=66.59 Aligned_cols=155 Identities=10% Similarity=-0.018 Sum_probs=97.5
Q ss_pred cCCCcHHHHHHHHHcCccccccC-CceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeec
Q 048084 212 MGGIGKTTLAQFAYNNGDVKKYF-DERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLD 290 (967)
Q Consensus 212 ~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlD 290 (967)
|.++||||+|..++++.- ...+ ..++-++++....... .++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 678999999999998621 1222 2466777776545443 33333332211110 01245799999
Q ss_pred CCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hHHhhh-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHH
Q 048084 291 DVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AIARIM-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKI 368 (967)
Q Consensus 291 dv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 368 (967)
+++.........++..+......+++|+++.+. .+...+ .....+.+.+++.++..+.+...+...+... ..+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i----~~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC----CHHH
Confidence 999887777788888887655566666666553 332222 2356899999999999888887654322111 1335
Q ss_pred HHHHHHHcCCChhHHHHH
Q 048084 369 GREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 369 ~~~i~~~~~g~Plai~~~ 386 (967)
...|++.++|.+..+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 788999999988544433
No 233
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.79 E-value=0.00033 Score=81.40 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=23.4
Q ss_pred ccceeeeccCccCcCCCc-CCC-CCCCcCeEEEcCCcchhhhh
Q 048084 907 RLSSLQILRCLKLKALPD-HLL-QKTTLQELWISGCPILKERC 947 (967)
Q Consensus 907 ~L~~L~l~~c~~l~~lp~-~~~-~l~~L~~L~l~~c~~l~~~~ 947 (967)
+|+.|++..|...+.--- ... .+.++..+++.+|+.+....
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 377777777755543110 011 15667777777777765443
No 234
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.78 E-value=0.021 Score=64.47 Aligned_cols=180 Identities=16% Similarity=0.113 Sum_probs=90.4
Q ss_pred CccccchhhHHHHHHHHhc---C-CCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLIC---E-GSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~---~-~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (967)
.++.|.+...+.+.+.... . ...+-..++-|.++|++|+|||.+|+.+++... ..| +-++.+. +.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~------l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK------LF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH------hc
Confidence 4577876665555543211 0 000113457899999999999999999998622 111 2222211 11
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC-------hh-h----HHHHHhhhcCCCCCcEEEEec
Q 048084 253 KAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN-------FY-K----WEQFNNCLKNCLHGSKILITT 320 (967)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~-------~~-~----~~~l~~~l~~~~~gs~iliTt 320 (967)
. ...+ .....+.+.+...-...+.+|++|+++... .. . ...+...+.....+..||.||
T Consensus 297 ~--------~~vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 297 G--------GIVG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred c--------cccC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 0 0000 111122222222223468999999985310 00 0 111222333333344455677
Q ss_pred CChh-HHhhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCc-cchhHHHHHHHHHHHcCCCh
Q 048084 321 RKEA-IARIM----GSIDIISINVLSEIECWSVFELLAFSGKSME-ERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 321 r~~~-v~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 380 (967)
.+.. +...+ .....+.++.-+.++-.++|+.+........ ...+ ...+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 6543 22221 2245778888899999999988765432111 1112 345666665543
No 235
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.78 E-value=0.0071 Score=73.89 Aligned_cols=136 Identities=13% Similarity=0.188 Sum_probs=77.6
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..++|.+..++.|.+.+..... ..+.....+.++|+.|+|||+||+.+++. .-+.-...+-++.++..+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 4689999999999888853211 01122356778999999999999888874 1111123344444432221111
Q ss_pred HHHHHhccCC--CCCCChHHHHHHHHHHhccCc-ceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEe
Q 048084 254 AIIEALTDSA--SNFGEFQSLMQRIQKHVARKK-LLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILIT 319 (967)
Q Consensus 254 ~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~~r-~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliT 319 (967)
...++... .+..+... +...++.++ -+++||+++..+.+.+..+...+..+. ..+-+|+|
T Consensus 585 --~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11112111 11111222 333344444 588999998877777777777776531 34556667
Q ss_pred cCC
Q 048084 320 TRK 322 (967)
Q Consensus 320 tr~ 322 (967)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 764
No 236
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.0033 Score=67.15 Aligned_cols=71 Identities=7% Similarity=0.025 Sum_probs=47.0
Q ss_pred cCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh-HHhhh-CCcceeecCCCChhhHHHHHHHH
Q 048084 282 RKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA-IARIM-GSIDIISINVLSEIECWSVFELL 352 (967)
Q Consensus 282 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~-v~~~~-~~~~~~~l~~l~~~~~~~l~~~~ 352 (967)
+++-++|+|++...+...-..+...+.....+..+|++|.+.. +...+ .....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3445667788877766666667777665444566777776643 33222 22468899999999998888653
No 237
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.76 E-value=0.051 Score=65.42 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=77.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
..++|+...+.++.+.+..... ....|.|+|..|+|||++|+.+..... ..-...+.+++.... ...+...+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEecccCC-hhHhhhhhc
Confidence 4699999999998877764332 345799999999999999999987521 112244566665432 111111111
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecCCh
Q 048084 257 EALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTRKE 323 (967)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr~~ 323 (967)
.......... .......+. ....=.|+||+++.........+...+.... ...+||.||...
T Consensus 449 g~~~~~~~g~--~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGA--SAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccccccccc--ccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1100000000 001111121 1234579999998876666666777664421 245888887653
No 238
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.76 E-value=0.00062 Score=63.50 Aligned_cols=89 Identities=25% Similarity=0.125 Sum_probs=48.7
Q ss_pred EEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcce
Q 048084 207 ISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLL 286 (967)
Q Consensus 207 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~L 286 (967)
|.|+|++|+|||+||+.+++.. =....-+.++...+..++....--. .. ........+.+.+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~-~~--~~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPS-NG--QFEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET--TT--TTCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeec-cc--ccccccccccccc-----cceeE
Confidence 6799999999999999998842 1133456677767766664332111 00 0000000001111 16889
Q ss_pred EeecCCCCCChhhHHHHHhhhc
Q 048084 287 LVLDDVWNENFYKWEQFNNCLK 308 (967)
Q Consensus 287 lvlDdv~~~~~~~~~~l~~~l~ 308 (967)
+|||++.......+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999997655444555555543
No 239
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.76 E-value=0.0037 Score=62.99 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=36.3
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
+...++.|+|++|+|||++|.+++.. ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 35689999999999999999887764 223346789999875 55554443
No 240
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.75 E-value=0.0077 Score=69.37 Aligned_cols=45 Identities=29% Similarity=0.482 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999877532 3356789999999999999998763
No 241
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.75 E-value=0.0059 Score=58.43 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=67.8
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHH
Q 048084 179 IFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEA 258 (967)
Q Consensus 179 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 258 (967)
+||.+..+.++.+.+..... ....|.|+|..|+||+.+|+.+.+.-. ..-..-+-|+++.. +.+.+..++
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~~-~~~~~e~~L--- 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAAL-PEELLESEL--- 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTTS--HHHHHHHH---
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhhh-hcchhhhhh---
Confidence 47888888888888865443 335678999999999999999998521 11122344444432 222222222
Q ss_pred hccCCCCCCChH-HHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCC------C-----CCcEEEEecCC
Q 048084 259 LTDSASNFGEFQ-SLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNC------L-----HGSKILITTRK 322 (967)
Q Consensus 259 l~~~~~~~~~~~-~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~iliTtr~ 322 (967)
++.......... ...-.+.. ...=-|+||++.......-..+..++... . ...|||.||..
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred hccccccccccccccCCceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 222111100000 00012222 23457889999776544444555555422 1 25688888875
No 242
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.75 E-value=0.00097 Score=65.62 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=60.9
Q ss_pred hccCCcceEEEecccCccccccccc-----ccccccccCCCCcEEEccCCCCcc----ccc-------hHHhccCCCCEE
Q 048084 589 FDKLICLRALKLEVRGWRSCENYIK-----EIPTNIEKLLHLKYLNLFCQREIE----KLP-------ETLCELYNLERL 652 (967)
Q Consensus 589 ~~~l~~L~~L~L~~~~~~~c~~~~~-----~lp~~i~~l~~L~~L~Ls~~~~i~----~lp-------~~~~~l~~L~~L 652 (967)
+..+..+..++|| + |.+. .+...|.+-.+|+..+++.-. .. .+| ..+-+|+.|+..
T Consensus 26 l~~~d~~~evdLS-----G--NtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v 97 (388)
T COG5238 26 LEMMDELVEVDLS-----G--NTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKV 97 (388)
T ss_pred HHhhcceeEEecc-----C--CcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceee
Confidence 4558899999999 5 4443 344556677889999888542 21 333 335689999999
Q ss_pred ecCCCCCCcccCcc----ccccccccEEecCCC
Q 048084 653 NVSGCRNLRELPQG----IGKLRKLMYLYNDRT 681 (967)
Q Consensus 653 ~L~~~~~l~~lp~~----l~~l~~L~~L~l~~~ 681 (967)
+|+.|.+-...|.. +++-+.|.||.+++|
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 99999855555543 567788999999888
No 243
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.0062 Score=62.68 Aligned_cols=82 Identities=24% Similarity=0.257 Sum_probs=50.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
+..-+.++|.+|+|||.||..+.++.. ..--.+.|++ ..+++.++...... ......+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhh-
Confidence 445699999999999999999998733 3223566764 44556666555432 111222222222
Q ss_pred CcceEeecCCCCCChhhHH
Q 048084 283 KKLLLVLDDVWNENFYKWE 301 (967)
Q Consensus 283 ~r~LlvlDdv~~~~~~~~~ 301 (967)
+-=||||||+.......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2449999999765545554
No 244
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.68 E-value=0.0085 Score=63.98 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=56.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKK 284 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r 284 (967)
..+.++|..|+|||.||..+++... ..-..|+|+++. +++..+...-... ..+... .+.. +. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~---~~~~-l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTAD------ELIEILREIRFNN---DKELEE---VYDL-LI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHH------HHHHHHHHHHhcc---chhHHH---HHHH-hc-cC
Confidence 5699999999999999999988632 222356777543 3333333211110 011111 1222 22 23
Q ss_pred ceEeecCCCCCChhhHH--HHHhhhcCC-CCCcEEEEecCC
Q 048084 285 LLLVLDDVWNENFYKWE--QFNNCLKNC-LHGSKILITTRK 322 (967)
Q Consensus 285 ~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iliTtr~ 322 (967)
=|||+||+.......|. .+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 58999999765434443 244433321 234568998885
No 245
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.67 E-value=0.022 Score=68.97 Aligned_cols=179 Identities=17% Similarity=0.160 Sum_probs=94.0
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
.++.|.+...+.|.+.+..+-.. .-..++-+.++|++|+|||++|+.+++. ....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 45788888888777765421110 1123456899999999999999999986 22222 22221 1
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCC--------Ch----hhHHHHHhhhcCC--CCCcE
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNE--------NF----YKWEQFNNCLKNC--LHGSK 315 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~--------~~----~~~~~l~~~l~~~--~~gs~ 315 (967)
+++. .. .+ .....+...+...-...+.+|++|+++.. .. .....+...+... ..+..
T Consensus 522 ~l~~----~~----vG-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 EILS----KW----VG-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred HHhh----cc----cC-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1111 10 00 11112222222333456789999998531 00 0112233333321 23444
Q ss_pred EEEecCChhHH-hhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 316 ILITTRKEAIA-RIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 316 iliTtr~~~v~-~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
||.||...... ..+ .....+.++..+.++..++|+.+..+... ....+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHcCCCC
Confidence 55566554322 111 12457888999999999999876533221 11222 445667776644
No 246
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.63 E-value=0.008 Score=59.17 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=53.9
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC-CCHHHHHHHHHHHhccCC---CCCCChHHHH-HHHHH
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP-FDEFRIAKAIIEALTDSA---SNFGEFQSLM-QRIQK 278 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l~~ 278 (967)
++++.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+. ....+..+.. +.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4799999999999999997776643322 445777877654 345667788888887542 2222333333 33443
Q ss_pred HhccCcceEeecCCCC
Q 048084 279 HVARKKLLLVLDDVWN 294 (967)
Q Consensus 279 ~l~~~r~LlvlDdv~~ 294 (967)
.-.++.=++++|=...
T Consensus 79 ~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHTTSSEEEEEE-SS
T ss_pred HhhcCCCEEEEecCCc
Confidence 3222334888887643
No 247
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.041 Score=61.77 Aligned_cols=160 Identities=19% Similarity=0.161 Sum_probs=82.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
-.++=|-++...+|.+.+.-+-.. .-..++-|.++|+||+|||++|+.+++. .+..| +.+..+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp--- 502 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP--- 502 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH---
Confidence 344556776666666554322110 1135788999999999999999999996 33344 222221
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHH-HHHHHhccCcceEeecCCCCCC-----------hhhHHHHHhhhcCCCCCcEE
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQ-RIQKHVARKKLLLVLDDVWNEN-----------FYKWEQFNNCLKNCLHGSKI 316 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~r~LlvlDdv~~~~-----------~~~~~~l~~~l~~~~~gs~i 316 (967)
+++... . .+.+..+. .+++.=+.-+.+++||.++... ..-+.++..-+........|
T Consensus 503 -EL~sk~----v------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 503 -ELFSKY----V------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred -HHHHHh----c------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 111111 0 01122222 2222222346888888874311 01122233333332222223
Q ss_pred E-E--ecCChhHHhh-hC---CcceeecCCCChhhHHHHHHHHhcCC
Q 048084 317 L-I--TTRKEAIARI-MG---SIDIISINVLSEIECWSVFELLAFSG 356 (967)
Q Consensus 317 l-i--Ttr~~~v~~~-~~---~~~~~~l~~l~~~~~~~l~~~~~~~~ 356 (967)
+ | |-|...+... +. ....+.++.=+.+...++|+.++.+.
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 3 3 3343333222 12 24577788778888889999887543
No 248
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00022 Score=70.30 Aligned_cols=99 Identities=25% Similarity=0.186 Sum_probs=53.5
Q ss_pred CCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccch--H
Q 048084 565 LRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPE--T 642 (967)
Q Consensus 565 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~--~ 642 (967)
+.+++.|++-+|.+..+ +....|+.|++|.|| - |.|+.+ ..+..|++|+.|.|+.|. |..+.+ -
T Consensus 18 l~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLS-----v--NkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLS-----V--NKISSL-APLQRCTRLKELYLRKNC-IESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCCccHH-----HHHHhcccceeEEee-----c--cccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHH
Confidence 44556666666653322 225566667777666 4 445544 235566666666666666 555543 2
Q ss_pred HhccCCCCEEecCCCCCCcccCc-----cccccccccEEe
Q 048084 643 LCELYNLERLNVSGCRNLRELPQ-----GIGKLRKLMYLY 677 (967)
Q Consensus 643 ~~~l~~L~~L~L~~~~~l~~lp~-----~l~~l~~L~~L~ 677 (967)
+.++++|+.|.|..|.-...-+. .+.-|++|+.|+
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 45666666666665543222221 134455555554
No 249
>PRK07261 topology modulation protein; Provisional
Probab=96.61 E-value=0.0055 Score=59.14 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=39.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcCcccc-ccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCc
Q 048084 206 IISLVGMGGIGKTTLAQFAYNNGDVK-KYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKK 284 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r 284 (967)
.|.|+|++|+||||||+.+....... -+.|...|-... ...+.++....+...+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 48999999999999999987642211 133444442111 11223445555666666555
Q ss_pred ceEeecCCC
Q 048084 285 LLLVLDDVW 293 (967)
Q Consensus 285 ~LlvlDdv~ 293 (967)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 6788773
No 250
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.59 E-value=0.0069 Score=59.07 Aligned_cols=37 Identities=30% Similarity=0.517 Sum_probs=29.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEE
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVC 241 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 241 (967)
...+|.+.|++|+||||+|+.+++. ....+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 4579999999999999999999885 444555566653
No 251
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.59 E-value=0.0088 Score=57.17 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=45.4
Q ss_pred EEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc--Cc
Q 048084 207 ISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR--KK 284 (967)
Q Consensus 207 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~r 284 (967)
+.|.|.+|+|||++|.++... ....++|+.-....+. +..+.|.+..... +......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 679999999999999887753 2245677766666554 3444444433322 2222222222333333321 24
Q ss_pred ceEeecCC
Q 048084 285 LLLVLDDV 292 (967)
Q Consensus 285 ~LlvlDdv 292 (967)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999987
No 252
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.59 E-value=0.0057 Score=62.40 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=34.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRI 251 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 251 (967)
...++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 5689999999999999999888764 22334678899887 4554443
No 253
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.58 E-value=0.011 Score=70.52 Aligned_cols=121 Identities=15% Similarity=0.203 Sum_probs=69.3
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 178 EIFGREDEKNDLVNRLICEGS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
.++|.++.++.|.+.+..... ..+.....+.++|++|+|||++|+.++... . ...+.++++.......
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhccccc----
Confidence 578999999999998863211 011234578999999999999999998752 2 2334555544322111
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHhc-cCcceEeecCCCCCChhhHHHHHhhhcC
Q 048084 255 IIEALTDSASNFGEFQSLMQRIQKHVA-RKKLLLVLDDVWNENFYKWEQFNNCLKN 309 (967)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~r~LlvlDdv~~~~~~~~~~l~~~l~~ 309 (967)
+.+-++.. +.....+ ....+.+.++ ...-+++||+++....+.+..+...+..
T Consensus 530 ~~~LiG~~-~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 530 VSRLIGAP-PGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred HHHHcCCC-CCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 11112221 1111000 0112222333 3346999999988776667777776654
No 254
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.02 Score=64.33 Aligned_cols=161 Identities=15% Similarity=0.072 Sum_probs=87.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHH----H
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQ----K 278 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~ 278 (967)
...-|.|.|+.|+|||+||+.+++... +...-.+.+|+++.-.. ...+..++.+. .
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~-------------------~~~e~iQk~l~~vfse 489 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDG-------------------SSLEKIQKFLNNVFSE 489 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccc-------------------hhHHHHHHHHHHHHHH
Confidence 456799999999999999999998744 55555677787775321 11222222222 3
Q ss_pred HhccCcceEeecCCCCC------ChhhHHH----HHhhh----c-CCCCCcE--EEEecCChhHHh-----hhCCcceee
Q 048084 279 HVARKKLLLVLDDVWNE------NFYKWEQ----FNNCL----K-NCLHGSK--ILITTRKEAIAR-----IMGSIDIIS 336 (967)
Q Consensus 279 ~l~~~r~LlvlDdv~~~------~~~~~~~----l~~~l----~-~~~~gs~--iliTtr~~~v~~-----~~~~~~~~~ 336 (967)
.+...+-++||||++-. +...|.. +..++ . ....+.+ +|.|.....-.. ..-....+.
T Consensus 490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 34556899999999421 1112221 11222 1 1123443 444444322111 111133678
Q ss_pred cCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCC-ChhHHHHHH
Q 048084 337 INVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKG-LPLAAKTIA 387 (967)
Q Consensus 337 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~ 387 (967)
|+++...+-.++++........ .. .+.+ ..-+..+|+| .|.-+.++.
T Consensus 570 L~ap~~~~R~~IL~~~~s~~~~-~~--~~~d-Ld~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIFSKNLS-DI--TMDD-LDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred cCCcchhHHHHHHHHHHHhhhh-hh--hhHH-HHHHHHhcCCccchhHHHHH
Confidence 9999988888888765432221 11 1111 2237777766 455555544
No 255
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.57 E-value=0.033 Score=55.47 Aligned_cols=210 Identities=11% Similarity=0.086 Sum_probs=115.7
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCc----cccccCCceEEEEecCC---------
Q 048084 179 IFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNG----DVKKYFDERIWVCVSDP--------- 245 (967)
Q Consensus 179 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~--------- 245 (967)
+.++++....+..... ++...-..++|+.|.||-|.+..+.++. -.+-.-+...|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666655543 2356788999999999999885554431 11112223344433221
Q ss_pred ------------CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcc-eEeecCCCCCChhhHHHHHhhhcCCCC
Q 048084 246 ------------FDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKL-LLVLDDVWNENFYKWEQFNNCLKNCLH 312 (967)
Q Consensus 246 ------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~-LlvlDdv~~~~~~~~~~l~~~l~~~~~ 312 (967)
...+.+.++++++......-.. -..+.| ++|+-.++....+.-..++.-+..-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1123344444444432211100 012234 556666655444444556655554456
Q ss_pred CcEEEEecCCh-hHHhhh-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 313 GSKILITTRKE-AIARIM-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 313 gs~iliTtr~~-~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
.+|+|+...+. .+...+ ...-.++++..+++|....+...+...+-.. + .+++.+|+++++|+-.-.-.+-..+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l-p---~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL-P---KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC-c---HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 67777754331 111111 2234789999999999999988875544322 2 5679999999999764443333333
Q ss_pred ccC----------CCHHHHHHHHhhhhhhh
Q 048084 391 RSK----------NTRKEWQNILESEIWEL 410 (967)
Q Consensus 391 ~~~----------~~~~~w~~~l~~~~~~~ 410 (967)
+-+ -...+|+.++.+....+
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIARVI 262 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHHHH
Confidence 211 13568988877654444
No 256
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.55 E-value=0.029 Score=54.85 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=65.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecC--CCCHHHH------HHHHHHHhccCC-----CCCCCh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSD--PFDEFRI------AKAIIEALTDSA-----SNFGEF 269 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~------~~~i~~~l~~~~-----~~~~~~ 269 (967)
...+++|.|..|+|||||++.++... ....+.+++.-.. ..+.... ..++++.++... ...-+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 34689999999999999999999852 2334455443211 1122111 112344443221 111122
Q ss_pred -HHHHHHHHHHhccCcceEeecCCCCC-ChhhHHHHHhhhcCCC-C-CcEEEEecCChhHH
Q 048084 270 -QSLMQRIQKHVARKKLLLVLDDVWNE-NFYKWEQFNNCLKNCL-H-GSKILITTRKEAIA 326 (967)
Q Consensus 270 -~~~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~-~-gs~iliTtr~~~v~ 326 (967)
+...-.+.+.+-..+-++++|+.-.. +......+...+.... . +.-||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22233345556667889999987432 3334444555444321 2 55688888876544
No 257
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.54 E-value=0.061 Score=56.67 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=41.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRI 251 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 251 (967)
++.++=..+....+...+.. .+.|.|.|.+|+||||+|+.++.. .... .+.|.+....+..++
T Consensus 44 d~~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CCCccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhc
Confidence 34555555666777777742 246999999999999999999885 2222 235555554444333
No 258
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.51 E-value=0.068 Score=52.71 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=85.4
Q ss_pred CCccccchhhHHH---HHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHH
Q 048084 176 ESEIFGREDEKND---LVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 176 ~~~~vGR~~~~~~---l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (967)
-.++||.++...+ |.+.|..+..=+.-.++-|..+|++|.|||.+|+.+++... .. ++.+. ..+++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp-----~l~vk----at~li 188 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VP-----LLLVK----ATELI 188 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cc-----eEEec----hHHHH
Confidence 3468898765543 55566543322345688999999999999999999999732 22 22222 11221
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCCC--------hhhHHH----HHhhhc--CCCCCcEEE
Q 048084 253 KAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNEN--------FYKWEQ----FNNCLK--NCLHGSKIL 317 (967)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~~--------~~~~~~----l~~~l~--~~~~gs~il 317 (967)
. +..+ +....++.+.+.. +.-++++++|.++-.. ..+..+ +..-+. ..+.|...|
T Consensus 189 G---ehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 189 G---EHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred H---HHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 1 1111 1112222222222 3458999999884311 011111 222222 123566666
Q ss_pred EecCChhHHhh-h--CCcceeecCCCChhhHHHHHHHHhcC
Q 048084 318 ITTRKEAIARI-M--GSIDIISINVLSEIECWSVFELLAFS 355 (967)
Q Consensus 318 iTtr~~~v~~~-~--~~~~~~~l~~l~~~~~~~l~~~~~~~ 355 (967)
-.|.+.+.... . ....-|+...-+.+|-.+++..++..
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 66665544332 1 12345666666788888888887643
No 259
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.50 E-value=0.0062 Score=58.39 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=44.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCC---CChHHHHHHHHHHhcc
Q 048084 206 IISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNF---GEFQSLMQRIQKHVAR 282 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~ 282 (967)
++.|.|.+|+|||++|..+.... . ..++|+.-... ...+..+.+..........- +...++...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~---~~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~- 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--G---LQVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA- 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--C---CCcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC-
Confidence 68999999999999998887641 1 12445544333 33455556655544332221 111234444444333
Q ss_pred CcceEeecCC
Q 048084 283 KKLLLVLDDV 292 (967)
Q Consensus 283 ~r~LlvlDdv 292 (967)
+.-++++|.+
T Consensus 76 ~~~~VlID~L 85 (170)
T PRK05800 76 PGRCVLVDCL 85 (170)
T ss_pred CCCEEEehhH
Confidence 2337889987
No 260
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.48 E-value=0.021 Score=66.51 Aligned_cols=134 Identities=14% Similarity=0.132 Sum_probs=76.1
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
....++|....++++.+.+..... ....|.|+|..|+|||++|+.+.+... ..-...+.|++..... ..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE--TLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH--HHHHH
Confidence 456799999999999988865432 345688999999999999999987521 1112335555554321 22221
Q ss_pred HHHHhccCCCC-CCC-hHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecC
Q 048084 255 IIEALTDSASN-FGE-FQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTR 321 (967)
Q Consensus 255 i~~~l~~~~~~-~~~-~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr 321 (967)
.+.+.... ... .......+. ....-.|+||++..........+...+.... ...+||.||.
T Consensus 266 ---~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 22111100 000 000000000 1234568899998876666666777665432 1247888775
Q ss_pred C
Q 048084 322 K 322 (967)
Q Consensus 322 ~ 322 (967)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 261
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.46 E-value=0.0077 Score=61.13 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=31.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
...++.|+|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 5689999999999999999888764 222334678887655443
No 262
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.026 Score=54.59 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC--CCHHHHHHHHHHHhcc--CCCCC---------CCh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP--FDEFRIAKAIIEALTD--SASNF---------GEF 269 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~--~~~~~---------~~~ 269 (967)
...+++|.|+.|.|||||.+.++.-. ....+.+++..... ...... .+.+.. +.... -+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 34689999999999999999999852 22344444322110 011111 111110 00000 111
Q ss_pred HH-HHHHHHHHhccCcceEeecCCCCC-ChhhHHHHHhhhcCCCCCcEEEEecCChhHHh
Q 048084 270 QS-LMQRIQKHVARKKLLLVLDDVWNE-NFYKWEQFNNCLKNCLHGSKILITTRKEAIAR 327 (967)
Q Consensus 270 ~~-~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~ 327 (967)
.+ ..-.+.+.+-.++-++++|+.... +......+...+.....+..||++|.+.....
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 11 222244555667889999987542 23334445454443223566888888776554
No 263
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.45 E-value=0.0006 Score=79.18 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=21.7
Q ss_pred eeeeccCccC-cCCCcCCCCCCCcCeEEEcCCcchhhh
Q 048084 910 SLQILRCLKL-KALPDHLLQKTTLQELWISGCPILKER 946 (967)
Q Consensus 910 ~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~~ 946 (967)
.+.+.+|+.+ ..+.........++.|+++.|..++..
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCcccccc
Confidence 4556667666 333222233334889999988776544
No 264
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.44 E-value=0.011 Score=60.36 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=52.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccc----cCCceEEEEecCCCCHHHHHHHHHHHhccCC---------CCCCCh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKK----YFDERIWVCVSDPFDEFRIAKAIIEALTDSA---------SNFGEF 269 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 269 (967)
...++.|+|.+|+|||+||.+++....... .-..++|++....++...+. ++.+...... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 567999999999999999988765421111 11567899987766654443 3333322110 011234
Q ss_pred HHHHHHHHHHhc----cCcceEeecCCC
Q 048084 270 QSLMQRIQKHVA----RKKLLLVLDDVW 293 (967)
Q Consensus 270 ~~~~~~l~~~l~----~~r~LlvlDdv~ 293 (967)
+++...+..... .+.-++|+|.+.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 444444444332 234477888773
No 265
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.052 Score=59.09 Aligned_cols=51 Identities=29% Similarity=0.326 Sum_probs=37.6
Q ss_pred ccccch---hhHHHHHHHHhcCCCC---CCCCCEEEEEEccCCCcHHHHHHHHHcCc
Q 048084 178 EIFGRE---DEKNDLVNRLICEGSK---EQKGPRIISLVGMGGIGKTTLAQFAYNNG 228 (967)
Q Consensus 178 ~~vGR~---~~~~~l~~~L~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~v~~~~ 228 (967)
+.-|-+ +|+++|++.|..+..- ...-++-|.++|++|.|||-||+.++.+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 445654 6788888888654310 12346789999999999999999999863
No 266
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.042 Score=64.23 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=87.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccC----CceEEEEecCCCCHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF----DERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~ 252 (967)
..++||++|++++++.|..... + --.++|.+|+|||++|.-++...-...-. +..++. .+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----N--NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD----- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----N--NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LD----- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----C--CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ec-----
Confidence 3479999999999999975432 1 23478999999999985555431111111 111111 01
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHhc-cCcceEeecCCCCC---------ChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 253 KAIIEALTDSASNFGEFQSLMQRIQKHVA-RKKLLLVLDDVWNE---------NFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~r~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
|..-..+. .-..+.++..+.+.+.++ .++.+|++|.+++. ..+.-.-+++.+..+. -++|-.|..
T Consensus 234 --~g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe--L~~IGATT~ 308 (786)
T COG0542 234 --LGSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE--LRCIGATTL 308 (786)
T ss_pred --HHHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC--eEEEEeccH
Confidence 11111111 122456666655555553 44899999998541 1222233455555432 245544443
Q ss_pred hhHHhhh-------CCcceeecCCCChhhHHHHHHHH
Q 048084 323 EAIARIM-------GSIDIISINVLSEIECWSVFELL 352 (967)
Q Consensus 323 ~~v~~~~-------~~~~~~~l~~l~~~~~~~l~~~~ 352 (967)
.+.-..+ ...+.+.+..-+.+++..+++-.
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 3332221 23568899999999999998744
No 267
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.39 E-value=0.041 Score=54.52 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=38.2
Q ss_pred HHHHHHHHHhccCcceEeecCCC-CCChhhHHHHHhhhcCC--CCCcEEEEecCChhHHhhhC
Q 048084 271 SLMQRIQKHVARKKLLLVLDDVW-NENFYKWEQFNNCLKNC--LHGSKILITTRKEAIARIMG 330 (967)
Q Consensus 271 ~~~~~l~~~l~~~r~LlvlDdv~-~~~~~~~~~l~~~l~~~--~~gs~iliTtr~~~v~~~~~ 330 (967)
+..-.+.+.+-..+-+|+-|+-- +.+...-+.+...+... ..|.-||+.|.+..++....
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34455677777888899999752 22223334444444432 34767999999999988543
No 268
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.042 Score=56.02 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=46.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCcccc--ccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVK--KYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
-++|.++|++|.|||+|++..++...++ +.|..-.-+.++. ..++.+...+- ..-...+.+.+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsES------gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSES------GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhh------hhHHHHHHHHHHHHHh
Confidence 5889999999999999999999975443 3343333333322 22222222111 1223455566666666
Q ss_pred cCcc--eEeecCCC
Q 048084 282 RKKL--LLVLDDVW 293 (967)
Q Consensus 282 ~~r~--LlvlDdv~ 293 (967)
++.. .+.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 5543 44588883
No 269
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.39 E-value=0.013 Score=66.23 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=61.6
Q ss_pred CCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 048084 201 QKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV 280 (967)
Q Consensus 201 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (967)
.+.-+++.++|++|.||||||+-++++ ..| .|+=|++|...+...+-..|...+....... .
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------a 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------A 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------c
Confidence 456789999999999999999999985 223 4678888888888777777665553321110 1
Q ss_pred ccCcceEeecCCCCCChhhHHHHHhhhc
Q 048084 281 ARKKLLLVLDDVWNENFYKWEQFNNCLK 308 (967)
Q Consensus 281 ~~~r~LlvlDdv~~~~~~~~~~l~~~l~ 308 (967)
.+++.-||+|.++-......+.+...+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2567888999886554334444554443
No 270
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.38 E-value=0.0024 Score=57.78 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+|+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 271
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.38 E-value=0.035 Score=54.16 Aligned_cols=119 Identities=14% Similarity=0.080 Sum_probs=61.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhc--cCC------------CCCCC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALT--DSA------------SNFGE 268 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~------------~~~~~ 268 (967)
...+++|.|..|+|||||++.+..... ...+.+++... +.......+.+.+. .+. ...-+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 346899999999999999999988522 22333433211 11111111111111 000 01111
Q ss_pred h-HHHHHHHHHHhccCcceEeecCCCCC-ChhhHHHHHhhhcCCCCCcEEEEecCChhHHh
Q 048084 269 F-QSLMQRIQKHVARKKLLLVLDDVWNE-NFYKWEQFNNCLKNCLHGSKILITTRKEAIAR 327 (967)
Q Consensus 269 ~-~~~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~ 327 (967)
. +...-.+.+.+-.++-++++|+.... +....+.+...+.....+.-||++|.+.....
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 1 22223344555667889999988542 22333444444433223566888888776554
No 272
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.37 E-value=0.039 Score=61.43 Aligned_cols=103 Identities=12% Similarity=0.060 Sum_probs=56.1
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC-HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD-EFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
.++++++|++|+||||++..++........-..+..|+...... ..+-+....+.++.......+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46999999999999999977665422112224566777654321 12223333444443322223344555555442 2
Q ss_pred CcceEeecCCCCC--ChhhHHHHHhhhc
Q 048084 283 KKLLLVLDDVWNE--NFYKWEQFNNCLK 308 (967)
Q Consensus 283 ~r~LlvlDdv~~~--~~~~~~~l~~~l~ 308 (967)
..=++|+|..... +......+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 3568899976432 2233445555555
No 273
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.37 E-value=0.011 Score=62.57 Aligned_cols=85 Identities=24% Similarity=0.196 Sum_probs=54.6
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccC-----CCCCCChHHHHHHH
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDS-----ASNFGEFQSLMQRI 276 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 276 (967)
+..+++-|+|++|+||||||.+++.. ....-..++||+..+.++.. .++.++.+ .....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35689999999999999999877654 22334567899877765542 33444322 11123455666666
Q ss_pred HHHhc-cCcceEeecCCC
Q 048084 277 QKHVA-RKKLLLVLDDVW 293 (967)
Q Consensus 277 ~~~l~-~~r~LlvlDdv~ 293 (967)
....+ +..-++|+|.+.
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55554 346689999873
No 274
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.34 E-value=0.024 Score=56.02 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=53.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh----
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV---- 280 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 280 (967)
+++.|.|.+|.||||+++.+.......+ ..++++ ......... +.+..+... ..+ ...+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~-apT~~Aa~~----L~~~~~~~a---~Ti---~~~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGL-APTNKAAKE----LREKTGIEA---QTI---HSFLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEE-ESSHHHHHH----HHHHHTS-E---EEH---HHHTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEE-CCcHHHHHH----HHHhhCcch---hhH---HHHHhcCCcccc
Confidence 6899999999999999988877532221 223333 332222222 323322110 000 00000000
Q ss_pred -----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh
Q 048084 281 -----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE 323 (967)
Q Consensus 281 -----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~ 323 (967)
..++-++|+|++...+...+..+....+. .|+++|+.=-..
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12346999999987766666666666655 477887765433
No 275
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.34 E-value=0.018 Score=58.05 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=72.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecC-----CCCHHHHHHHHHHHhccC------CCCCCChHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSD-----PFDEFRIAKAIIEALTDS------ASNFGEFQS 271 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~------~~~~~~~~~ 271 (967)
...+++|+|..|+||||+++.+..- ...-.+.+++.... .....+-..++++.++.. .+..-+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4468999999999999999999984 33334455554222 112333455555555532 122222223
Q ss_pred H-HHHHHHHhccCcceEeecCCCCCC-hhhHHHHHhhhcCC--CCCcEEEEecCChhHHhhhC
Q 048084 272 L-MQRIQKHVARKKLLLVLDDVWNEN-FYKWEQFNNCLKNC--LHGSKILITTRKEAIARIMG 330 (967)
Q Consensus 272 ~-~~~l~~~l~~~r~LlvlDdv~~~~-~~~~~~l~~~l~~~--~~gs~iliTtr~~~v~~~~~ 330 (967)
. .-.+.+.+.-++-++|.|+.-... ...-.++...+.+. ..|-..++.|.+-.+...+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 2 334667778889999999874421 11112333333321 24556777778777766543
No 276
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.33 E-value=0.018 Score=55.26 Aligned_cols=39 Identities=28% Similarity=0.258 Sum_probs=28.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF 246 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 246 (967)
++.|+|.+|+||||++..+.... ...-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence 36899999999999998888752 2233467788776543
No 277
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.33 E-value=0.046 Score=51.06 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=59.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
...+++|.|..|.|||||++.+..... ...+.+|+.... .+.-- .....-+...-.+.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999988522 223444442100 00000 0011112222334555566
Q ss_pred CcceEeecCCCC-CChhhHHHHHhhhcCCCCCcEEEEecCChhHHh
Q 048084 283 KKLLLVLDDVWN-ENFYKWEQFNNCLKNCLHGSKILITTRKEAIAR 327 (967)
Q Consensus 283 ~r~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~ 327 (967)
++-++++|+.-. .+......+...+... +..||++|.+.+...
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 788999998743 2334455555555543 235777777755443
No 278
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.32 E-value=0.032 Score=53.82 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=64.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC---cccccc---CC--ceEEEEecCCCCHHHHHHHHHHHhccCCC------CCCC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN---GDVKKY---FD--ERIWVCVSDPFDEFRIAKAIIEALTDSAS------NFGE 268 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~---~~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~ 268 (967)
...+++|+|+.|+|||||.+.+..+ ..+... |. .+.|+ .+ .+.++.++.... ...+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 3468999999999999999888632 111111 10 12332 11 345555543211 1111
Q ss_pred hH-HHHHHHHHHhccC--cceEeecCCCCC-ChhhHHHHHhhhcCC-CCCcEEEEecCChhHHhhhCCcceeec
Q 048084 269 FQ-SLMQRIQKHVARK--KLLLVLDDVWNE-NFYKWEQFNNCLKNC-LHGSKILITTRKEAIARIMGSIDIISI 337 (967)
Q Consensus 269 ~~-~~~~~l~~~l~~~--r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iliTtr~~~v~~~~~~~~~~~l 337 (967)
.. ...-.+.+.+-.+ +-++++|+.-.. +......+...+... ..|..||++|.+...... ....+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 12 2223344455556 778899987432 333344444444322 245668888888765432 3344444
No 279
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.32 E-value=0.015 Score=59.96 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=38.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccc----cCCceEEEEecCCCCHHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKK----YFDERIWVCVSDPFDEFRIAKAIIEAL 259 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 259 (967)
...++.|+|.+|+|||+||.+++-...... .-..++|++....++...+. ++++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~ 77 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERF 77 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHh
Confidence 568999999999999999988864321111 13678999988776654443 344443
No 280
>PRK06696 uridine kinase; Validated
Probab=96.32 E-value=0.0049 Score=62.60 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=36.2
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 181 GREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 181 GR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|++.+++|.+.+.... .+...+|+|.|.+|+||||+|+.+.+.
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46778888888886532 246789999999999999999999875
No 281
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.31 E-value=0.055 Score=52.00 Aligned_cols=119 Identities=10% Similarity=0.070 Sum_probs=61.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccc-ccc--CC---ceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDV-KKY--FD---ERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRI 276 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 276 (967)
...+++|+|..|.|||||++.+...... .+. ++ .+.++.-........+.+.+.-. .......-+...-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 3468999999999999999999985221 110 11 12222211111111222222210 111122222333345
Q ss_pred HHHhccCcceEeecCCCCC-ChhhHHHHHhhhcCCCCCcEEEEecCChhHH
Q 048084 277 QKHVARKKLLLVLDDVWNE-NFYKWEQFNNCLKNCLHGSKILITTRKEAIA 326 (967)
Q Consensus 277 ~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~ 326 (967)
.+.+-.++-++++|+.-.. +......+...+... +.-||++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 5556667889999987432 223334454544432 34577777776554
No 282
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.31 E-value=0.0084 Score=59.52 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=58.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKK 284 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r 284 (967)
..+.|+|+.|+||||++..+... ........+++- ..+. +...... ..+-.......+.....+.++..+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~--E~~~~~~-~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPI--EFVHESK-RSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCc--cccccCc-cceeeecccCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999887764 222233333332 2111 1110000 0000000001112334556777776677
Q ss_pred ceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHHh
Q 048084 285 LLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIAR 327 (967)
Q Consensus 285 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~ 327 (967)
=.+++|++.+. +.+..+.... ..|..++.|+....+..
T Consensus 76 d~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 89999999654 3333333322 34556777777655443
No 283
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.30 E-value=0.003 Score=70.39 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=40.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+++|.++.+++|++.|......-....+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999994332212345689999999999999999998873
No 284
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00029 Score=69.44 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=74.6
Q ss_pred cCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCc--ccc
Q 048084 591 KLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQ--GIG 668 (967)
Q Consensus 591 ~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~--~l~ 668 (967)
.+.+.+.|+.. +| .+.+|. -+..++.|++|.||-|+ |..|.. +..|++|++|.|+.|. +..+-+ -+.
T Consensus 17 dl~~vkKLNcw-----g~--~L~DIs-ic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLk 85 (388)
T KOG2123|consen 17 DLENVKKLNCW-----GC--GLDDIS-ICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLK 85 (388)
T ss_pred HHHHhhhhccc-----CC--CccHHH-HHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHh
Confidence 34556666665 63 355552 24579999999999999 888876 8899999999999998 666532 367
Q ss_pred ccccccEEecCCCccccccccC-----CCCCCCCCcCCceE
Q 048084 669 KLRKLMYLYNDRTESLRYLPVG-----IEELIRLRGVTKFV 704 (967)
Q Consensus 669 ~l~~L~~L~l~~~~~~~~~p~~-----~~~l~~L~~L~~~~ 704 (967)
++++|+.|.|..|+....-+.. +..|++|+.|+-..
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 8999999999998766554432 45567777665443
No 285
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.28 E-value=0.015 Score=65.95 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=45.8
Q ss_pred CCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEE
Q 048084 173 SIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVC 241 (967)
Q Consensus 173 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 241 (967)
|....+++--.+.++++..||...-. .....+++.+.|++|+||||.++.++++ -.|+.+=|.+
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 33445566667888999999875432 2234679999999999999999999985 2355555654
No 286
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.28 E-value=0.017 Score=62.20 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=74.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHH
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIE 257 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 257 (967)
.++|+...+.++.+.+..... ....|.|+|..|+||+++|+.+..... ..-...+.|++.... ...+...+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 589999999999988865442 345688999999999999998876311 111233455555432 2222222211
Q ss_pred HhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecCC
Q 048084 258 ALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTRK 322 (967)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr~ 322 (967)
.-........ ......+. ....=.|+||++..........+...+..+. ...+||.||..
T Consensus 80 ~~~~~~~g~~--~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGAFTGAQ--KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccCCcc--cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 0000000000 00011111 1223458899998876666666777665432 13578887764
No 287
>PHA02244 ATPase-like protein
Probab=96.27 E-value=0.022 Score=60.63 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=52.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcc
Q 048084 206 IISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKL 285 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~ 285 (967)
-|.|+|++|+|||+||+.++.. ... -|+.++...+. ....+.... ...+.. ..+.+.. .+--
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~--lg~-----pfv~In~l~d~-------~~L~G~i~~-~g~~~d--gpLl~A~-~~Gg 182 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA--LDL-----DFYFMNAIMDE-------FELKGFIDA-NGKFHE--TPFYEAF-KKGG 182 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCC-----CEEEEecChHH-------Hhhcccccc-cccccc--hHHHHHh-hcCC
Confidence 4788999999999999999874 221 23333321110 001110000 011110 0111212 2356
Q ss_pred eEeecCCCCCChhhHHHHHhhhcC-----------CCCCcEEEEecCC
Q 048084 286 LLVLDDVWNENFYKWEQFNNCLKN-----------CLHGSKILITTRK 322 (967)
Q Consensus 286 LlvlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~iliTtr~ 322 (967)
+++||++.....+....+...+.. ..++.++|+|+..
T Consensus 183 vLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 183 LFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred EEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 999999976554444555555421 1356788888875
No 288
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.25 E-value=0.029 Score=64.75 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
...++|+...++++.+.+..... ....|.|+|..|+|||++|+.+..... ..-...+.|++....+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~e-- 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLAE-- 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHHH--
Confidence 45699999999999998876443 446789999999999999999987521 1112345666665432 2222
Q ss_pred HHHhccCCCC-CCC-hHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecCC
Q 048084 256 IEALTDSASN-FGE-FQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTRK 322 (967)
Q Consensus 256 ~~~l~~~~~~-~~~-~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr~ 322 (967)
..+.+.... ... .......+. ....=-|+||++..........+...+.... ...+||.||..
T Consensus 256 -~~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 256 -SELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred -HHhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 122111100 000 000000111 1123347899998876666667777765432 24588887765
Q ss_pred h
Q 048084 323 E 323 (967)
Q Consensus 323 ~ 323 (967)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 3
No 289
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.02 Score=62.21 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=50.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC-HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD-EFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
...+++++|++|+||||++..++........+ .+..++...... ....++..++.++.+.....+.. .+...+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~----~l~~~l~ 296 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIK----KFKETLA 296 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHH----HHHHHHH
Confidence 35789999999999999998887642222222 344444433211 22333333344433221111122 2333332
Q ss_pred -cCcceEeecCCCC--CChhhHHHHHhhhc
Q 048084 282 -RKKLLLVLDDVWN--ENFYKWEQFNNCLK 308 (967)
Q Consensus 282 -~~r~LlvlDdv~~--~~~~~~~~l~~~l~ 308 (967)
...=++|+|-... .+....+.+...+.
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~ 326 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQLERMQSFYS 326 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHHHHHHHHHHH
Confidence 2334688994432 23344555555443
No 290
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.06 Score=62.48 Aligned_cols=181 Identities=17% Similarity=0.157 Sum_probs=98.2
Q ss_pred Cccccchh---hHHHHHHHHhcCCCC---CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHH
Q 048084 177 SEIFGRED---EKNDLVNRLICEGSK---EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFR 250 (967)
Q Consensus 177 ~~~vGR~~---~~~~l~~~L~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (967)
.++.|-++ |++++++.|..+... ...-++-+.|+|++|.|||-||+.++.... |-|++++.. +
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----E 379 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----E 379 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH----H
Confidence 45778765 555555555433211 123578899999999999999999998632 445555542 1
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCC---------------ChhhHHHHHhhhcCCCCCc
Q 048084 251 IAKAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNE---------------NFYKWEQFNNCLKNCLHGS 314 (967)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~---------------~~~~~~~l~~~l~~~~~gs 314 (967)
+ ++.+... . ...++.+-... ...+.++.+|+++.. ....+.++..-+.......
T Consensus 380 F----vE~~~g~-----~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 380 F----VEMFVGV-----G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred H----HHHhccc-----c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1 1111111 0 11111222222 244778888877421 1122344444444433333
Q ss_pred -EEEE-ecCChhHHh-hh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhH
Q 048084 315 -KILI-TTRKEAIAR-IM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLA 382 (967)
Q Consensus 315 -~ili-Ttr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 382 (967)
.|++ +|+...+.. .. .....+.++.=+.....++|..++...... .+..++.+ |+...-|++=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 3333 344333221 11 124577888888888899999887543322 33444555 88888887744
No 291
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.18 E-value=0.015 Score=61.45 Aligned_cols=85 Identities=22% Similarity=0.188 Sum_probs=54.5
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHH
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSA-----SNFGEFQSLMQRI 276 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 276 (967)
+..+++-|+|++|+||||||.+++.. ....-..++||+..+.++.. .++.++.+. ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35689999999999999999777664 22233567899877655542 344443321 1123455666666
Q ss_pred HHHhc-cCcceEeecCCC
Q 048084 277 QKHVA-RKKLLLVLDDVW 293 (967)
Q Consensus 277 ~~~l~-~~r~LlvlDdv~ 293 (967)
....+ +..-++|+|.+.
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 446689999884
No 292
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.17 E-value=0.029 Score=57.58 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=54.5
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCC------------------
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSA------------------ 263 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------ 263 (967)
+...++.|+|.+|+|||++|.++.... . ..=..++|++..+ +..++.+++. +++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~-~~g~~~~y~~~e~--~~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-L-KQGKKVYVITTEN--TSKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-H-hCCCEEEEEEcCC--CHHHHHHHHH-HCCCChhHHHhCCCceEEeccccc
Confidence 356899999999999999998875431 1 2234678888865 4555555542 222110
Q ss_pred --CCCCChHHHHHHHHHHhcc-CcceEeecCCC
Q 048084 264 --SNFGEFQSLMQRIQKHVAR-KKLLLVLDDVW 293 (967)
Q Consensus 264 --~~~~~~~~~~~~l~~~l~~-~r~LlvlDdv~ 293 (967)
......+++...+...+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112235566666666653 56689999874
No 293
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.17 E-value=0.023 Score=59.01 Aligned_cols=131 Identities=23% Similarity=0.268 Sum_probs=70.9
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC-ccccccCCceE-E---EEecCCC-----C-
Q 048084 179 IFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN-GDVKKYFDERI-W---VCVSDPF-----D- 247 (967)
Q Consensus 179 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~-~~~~~~f~~~~-w---v~~~~~~-----~- 247 (967)
+-+|..+..--.+.|. ++....|.+.|.+|.|||-||-.+.-. ...+..|..++ . +.+++.. +
T Consensus 226 i~prn~eQ~~ALdlLl------d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLL------DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhc------CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 3456666666677775 346799999999999999999433321 11233343222 1 1122210 1
Q ss_pred ---HHHHHHHHHHHhc---c-CCCCCCChHHHHHHH-H---------HHhccC---cceEeecCCCCCChhhHHHHHhhh
Q 048084 248 ---EFRIAKAIIEALT---D-SASNFGEFQSLMQRI-Q---------KHVARK---KLLLVLDDVWNENFYKWEQFNNCL 307 (967)
Q Consensus 248 ---~~~~~~~i~~~l~---~-~~~~~~~~~~~~~~l-~---------~~l~~~---r~LlvlDdv~~~~~~~~~~l~~~l 307 (967)
+.-.++.+..-+. . ..+. .+..+.+ . .+.+++ .-++|+|.+++... .+++..+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~----~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTil 372 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPG----DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTIL 372 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccc----hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHH
Confidence 1111222222221 1 1111 1122211 1 122344 46999999988755 4566666
Q ss_pred cCCCCCcEEEEecCC
Q 048084 308 KNCLHGSKILITTRK 322 (967)
Q Consensus 308 ~~~~~gs~iliTtr~ 322 (967)
-..+.||||+.|--.
T Consensus 373 tR~G~GsKIVl~gd~ 387 (436)
T COG1875 373 TRAGEGSKIVLTGDP 387 (436)
T ss_pred HhccCCCEEEEcCCH
Confidence 677889999998763
No 294
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.17 E-value=0.024 Score=54.32 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=62.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC--CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP--FDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
..+++|.|..|+|||||.+.++.. .....+.+++..... .+.....+ +.++. ..+...-+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHh
Confidence 468999999999999999999875 223445555532211 11111111 11110 0011222223334455566
Q ss_pred cCcceEeecCCCCC-ChhhHHHHHhhhcCC-CCCcEEEEecCChhHH
Q 048084 282 RKKLLLVLDDVWNE-NFYKWEQFNNCLKNC-LHGSKILITTRKEAIA 326 (967)
Q Consensus 282 ~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iliTtr~~~v~ 326 (967)
.++-++++|+.-.. +......+...+... ..|.-||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 67889999987432 333344454444322 2355688888876543
No 295
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.16 E-value=0.0019 Score=63.85 Aligned_cols=61 Identities=30% Similarity=0.258 Sum_probs=31.1
Q ss_pred ccCCCCcEEEccCC--CCccccchHHhccCCCCEEecCCCCCCcccC--ccccccccccEEecCCC
Q 048084 620 EKLLHLKYLNLFCQ--REIEKLPETLCELYNLERLNVSGCRNLRELP--QGIGKLRKLMYLYNDRT 681 (967)
Q Consensus 620 ~~l~~L~~L~Ls~~--~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~l~~~ 681 (967)
-.|++|++|.+|.| .....++-...++++|++|++++|+ ++.+- ..+..+.+|..|++.+|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccC
Confidence 34556666666666 3222344434455666666666665 33211 12344555556666555
No 296
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.044 Score=59.18 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=53.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC-CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP-FDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
...+++++|+.|+||||++.++......+.....+.+++.... ....+-++...+.++.......+..++...+.+ +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 3479999999999999999888875221211235666665442 234455565666665543322333333333433 34
Q ss_pred cCcceEeecCCCCC
Q 048084 282 RKKLLLVLDDVWNE 295 (967)
Q Consensus 282 ~~r~LlvlDdv~~~ 295 (967)
+ +-++++|.....
T Consensus 215 ~-~DlVLIDTaG~~ 227 (374)
T PRK14722 215 N-KHMVLIDTIGMS 227 (374)
T ss_pred C-CCEEEEcCCCCC
Confidence 4 456779988644
No 297
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.12 E-value=0.016 Score=59.89 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=39.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCcccc----ccCCceEEEEecCCCCHHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVK----KYFDERIWVCVSDPFDEFRIAKAIIEAL 259 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 259 (967)
...+.=|+|++|+|||.||.+++-..... +.=..++|++-...++...+. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 45689999999999999997665331221 222468999988888877665 466654
No 298
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.039 Score=60.20 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=61.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCcccc--ccCCceEEEEecCCC-CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVK--KYFDERIWVCVSDPF-DEFRIAKAIIEALTDSASNFGEFQSLMQRIQKH 279 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 279 (967)
..++|.++|+.|+||||.+..++...... ..-..+..+++.... ...+-++..++.++.+-......+++...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46799999999999999998777642221 122345666665432 122335555555554433333445555545443
Q ss_pred hccCcceEeecCCCCCCh--hhHHHHHhhhcCC
Q 048084 280 VARKKLLLVLDDVWNENF--YKWEQFNNCLKNC 310 (967)
Q Consensus 280 l~~~r~LlvlDdv~~~~~--~~~~~l~~~l~~~ 310 (967)
.+.-++++|.+..... ..+..+...+...
T Consensus 253 --~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred --CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 3466899998865432 2344555555543
No 299
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.08 E-value=0.033 Score=52.12 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=60.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecC---CCCHHHHHHHHHHHhc-----cCC-CCCCChH-----
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSD---PFDEFRIAKAIIEALT-----DSA-SNFGEFQ----- 270 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~-----~~~-~~~~~~~----- 270 (967)
..|-|++..|.||||+|...+-. ..++=..+.++..-. ......+++.+- .+. ... ....+.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 46888888899999999544432 122222344433322 233333333331 010 000 0001111
Q ss_pred --HHHHHHHHHhcc-CcceEeecCCCCC---ChhhHHHHHhhhcCCCCCcEEEEecCChh
Q 048084 271 --SLMQRIQKHVAR-KKLLLVLDDVWNE---NFYKWEQFNNCLKNCLHGSKILITTRKEA 324 (967)
Q Consensus 271 --~~~~~l~~~l~~-~r~LlvlDdv~~~---~~~~~~~l~~~l~~~~~gs~iliTtr~~~ 324 (967)
+..+..++.+.. +-=|+|||++-.. ..-..+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122233334433 3459999998321 22345667777776666778999999853
No 300
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.06 E-value=0.021 Score=60.01 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=48.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC-CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF-DEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
..++++|+|++|+||||++..++.....+..-..+..|+..... ...+.+....+.++.......+..++...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 46799999999999999998887653222111346667655422 122333333444443322223334444444433 2
Q ss_pred cCcceEeecCC
Q 048084 282 RKKLLLVLDDV 292 (967)
Q Consensus 282 ~~r~LlvlDdv 292 (967)
+ .=++++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 2 347777754
No 301
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.06 E-value=0.27 Score=51.78 Aligned_cols=157 Identities=10% Similarity=0.036 Sum_probs=90.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCc--------cccccCCceEEEEe-cCCCCHHHHHHHHHHHhccCCCCCCChHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNG--------DVKKYFDERIWVCV-SDPFDEFRIAKAIIEALTDSASNFGEFQSLM 273 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 273 (967)
-.++..++|..|.||+++|..+.+.. ....+.+.+.+++. +....+.++. ++.+.+....
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC----------
Confidence 45677799999999999997776641 11122223334321 1112222221 2222221110
Q ss_pred HHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hHHhh-hCCcceeecCCCChhhHHHHHHH
Q 048084 274 QRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AIARI-MGSIDIISINVLSEIECWSVFEL 351 (967)
Q Consensus 274 ~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~-~~~~~~~~l~~l~~~~~~~l~~~ 351 (967)
.-.+++-++|+|+++.........+...+......+.+|++|.+. .+... ......+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 001467789999997776667777888888777777777655543 33322 33467899999999998887765
Q ss_pred HhcCCCCCccchhHHHHHHHHHHHcCCChhHHHH
Q 048084 352 LAFSGKSMEERENLEKIGREIVGKCKGLPLAAKT 385 (967)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (967)
. + . + .+.+..++...+|.=-|+..
T Consensus 161 ~--~-~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 161 K--N-K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred c--C-C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 3 1 1 1 12255566666663344444
No 302
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.06 E-value=0.047 Score=52.98 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=44.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC-CHHHHHHHHHHHhccC---CCCCCChHHHH-HHHHHHh
Q 048084 206 IISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF-DEFRIAKAIIEALTDS---ASNFGEFQSLM-QRIQKHV 280 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~-~~l~~~l 280 (967)
++.++|++|+||||+++.++.... ..=..++.++..... ...+.+...++..+.. .....+..++. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~--~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK--KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 678999999999999988887522 221234555544321 2223333333333311 11222333333 3333333
Q ss_pred ccCcceEeecCCCC
Q 048084 281 ARKKLLLVLDDVWN 294 (967)
Q Consensus 281 ~~~r~LlvlDdv~~ 294 (967)
....-++|+|....
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 43444677887654
No 303
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.04 E-value=0.064 Score=51.82 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=57.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEe------cCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCV------SDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRI 276 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 276 (967)
...+++|+|+.|+|||||++.+..-.. ...+.+++.. .+... ...-+...-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHH
Confidence 346999999999999999999987422 2233333321 11110 11122233334
Q ss_pred HHHhccCcceEeecCCCCC-ChhhHHHHHhhhcCC--CCCcEEEEecCChhHHh
Q 048084 277 QKHVARKKLLLVLDDVWNE-NFYKWEQFNNCLKNC--LHGSKILITTRKEAIAR 327 (967)
Q Consensus 277 ~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iliTtr~~~v~~ 327 (967)
.+.+-.++-++++|+.-.. +......+...+... ..+.-||++|.+.....
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 5556667889999987432 223333344444321 12245777777765444
No 304
>PRK09354 recA recombinase A; Provisional
Probab=96.00 E-value=0.021 Score=60.84 Aligned_cols=85 Identities=22% Similarity=0.193 Sum_probs=55.7
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccC-----CCCCCChHHHHHHH
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDS-----ASNFGEFQSLMQRI 276 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 276 (967)
+..+++-|+|++|+||||||.+++.. ....-..++||+....++.. .++.++.+ .......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35689999999999999999777754 22334567899887766642 34444432 11123455666666
Q ss_pred HHHhc-cCcceEeecCCC
Q 048084 277 QKHVA-RKKLLLVLDDVW 293 (967)
Q Consensus 277 ~~~l~-~~r~LlvlDdv~ 293 (967)
...++ +..-++|+|.+.
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 65554 446689999884
No 305
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.00 E-value=0.0023 Score=63.35 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=52.4
Q ss_pred cCCCCcEEEccCCCCccccchHHhccCCCCEEecCCC--CCCcccCccccccccccEEecCCCccccccccC---CCCCC
Q 048084 621 KLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGC--RNLRELPQGIGKLRKLMYLYNDRTESLRYLPVG---IEELI 695 (967)
Q Consensus 621 ~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~--~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~---~~~l~ 695 (967)
.+..|+.|++.++. ++.+-. +..|++|+.|.++.| .....++.-...+++|++|++++| .+.. +.. +..+.
T Consensus 41 ~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhc
Confidence 45566666676666 554433 556889999999999 434555555667899999999999 4433 222 33444
Q ss_pred CCCcCCceEec
Q 048084 696 RLRGVTKFVVG 706 (967)
Q Consensus 696 ~L~~L~~~~~~ 706 (967)
+|..|+++.+.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 44455544443
No 306
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.086 Score=53.21 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=65.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCcc-ccc---c-------C---CceEEEEecC------CCCHH--------------
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGD-VKK---Y-------F---DERIWVCVSD------PFDEF-------------- 249 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~-~~~---~-------f---~~~~wv~~~~------~~~~~-------------- 249 (967)
..+++|+|+.|.|||||.+.+..-.. .++ . . ..+.||.=.. +.++.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 37999999999999999999998311 000 0 1 2345554211 11122
Q ss_pred --------HHHHHHHHHhccCC-----CCCCChHHH-HHHHHHHhccCcceEeecCCCC----CChhhHHHHHhhhcCCC
Q 048084 250 --------RIAKAIIEALTDSA-----SNFGEFQSL-MQRIQKHVARKKLLLVLDDVWN----ENFYKWEQFNNCLKNCL 311 (967)
Q Consensus 250 --------~~~~~i~~~l~~~~-----~~~~~~~~~-~~~l~~~l~~~r~LlvlDdv~~----~~~~~~~~l~~~l~~~~ 311 (967)
+...+.++.++... -..-+-.+. .-.+.+.|..++=|++||+--. ........+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 22333344443221 111222333 3445677788899999997532 2222333344444443
Q ss_pred CCcEEEEecCChhHH
Q 048084 312 HGSKILITTRKEAIA 326 (967)
Q Consensus 312 ~gs~iliTtr~~~v~ 326 (967)
|.-||++|.+-...
T Consensus 189 -g~tIl~vtHDL~~v 202 (254)
T COG1121 189 -GKTVLMVTHDLGLV 202 (254)
T ss_pred -CCEEEEEeCCcHHh
Confidence 77788888875433
No 307
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.069 Score=57.11 Aligned_cols=104 Identities=16% Similarity=0.018 Sum_probs=61.4
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC-HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD-EFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV 280 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (967)
.+.++++++|+.|+||||++..++.... ..-..+.+|++..... ..+-++..++.++.......+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 3578999999999999999988776422 2223567777765432 344455555555543222345556655554432
Q ss_pred c-cCcceEeecCCCCC--ChhhHHHHHhhh
Q 048084 281 A-RKKLLLVLDDVWNE--NFYKWEQFNNCL 307 (967)
Q Consensus 281 ~-~~r~LlvlDdv~~~--~~~~~~~l~~~l 307 (967)
. +..=++++|-.... +......+....
T Consensus 282 ~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 282 YVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred hcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 1 34568889988552 223344454444
No 308
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.039 Score=53.55 Aligned_cols=119 Identities=20% Similarity=0.134 Sum_probs=61.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhc--cCCCC---C--------CCh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALT--DSASN---F--------GEF 269 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~---~--------~~~ 269 (967)
...+++|+|..|.|||||++.++... ....+.+++......... ..+...+. .+... . -+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 34689999999999999999998852 123344444221100000 01111111 00000 0 111
Q ss_pred HH-HHHHHHHHhccCcceEeecCCCCC-ChhhHHHHHhhhcCC-CCCcEEEEecCChhHHh
Q 048084 270 QS-LMQRIQKHVARKKLLLVLDDVWNE-NFYKWEQFNNCLKNC-LHGSKILITTRKEAIAR 327 (967)
Q Consensus 270 ~~-~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iliTtr~~~v~~ 327 (967)
.+ ..-.+.+.+-.++-++++|+.-.. +......+...+... ..|.-||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 22 222355666677889999987442 223334444444322 13566888888766544
No 309
>PRK14974 cell division protein FtsY; Provisional
Probab=95.96 E-value=0.062 Score=57.44 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=54.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC-CCHHHHHHHHHHHhccCCC---CCCChHH-HHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP-FDEFRIAKAIIEALTDSAS---NFGEFQS-LMQRIQ 277 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l~ 277 (967)
++.+++++|++|+||||++..++.... ...+ .++.+..... ....+-++..++.++.... ...+... +...+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 468999999999999998877776422 1223 3444543322 1223345555666654321 1122222 223333
Q ss_pred HHhccCcceEeecCCCCC--ChhhHHHHHhhhc
Q 048084 278 KHVARKKLLLVLDDVWNE--NFYKWEQFNNCLK 308 (967)
Q Consensus 278 ~~l~~~r~LlvlDdv~~~--~~~~~~~l~~~l~ 308 (967)
.......=++++|-+... +...+.++.....
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~ 249 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVR 249 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHH
Confidence 322222339999988654 2334455554433
No 310
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.95 E-value=0.019 Score=61.03 Aligned_cols=58 Identities=19% Similarity=0.143 Sum_probs=40.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCcccc----ccCCceEEEEecCCCCHHHHHHHHHHHhcc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVK----KYFDERIWVCVSDPFDEFRIAKAIIEALTD 261 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 261 (967)
..+++-|+|++|+|||+|+.+++-..... ..=..++||+....++.+.+.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 56899999999999999997655321111 1124689999888888777654 5566543
No 311
>PRK13695 putative NTPase; Provisional
Probab=95.95 E-value=0.0081 Score=58.38 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998775
No 312
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.94 E-value=0.068 Score=55.00 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.3
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 048084 206 IISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~ 226 (967)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 678999999999999977764
No 313
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.94 E-value=0.04 Score=53.46 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=59.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC--CCHHHHHHHHHHHhcc--CCCCC---------CChH
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP--FDEFRIAKAIIEALTD--SASNF---------GEFQ 270 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~--~~~~~---------~~~~ 270 (967)
..+++|+|+.|+|||||++.++... ....+.+++..... ...... .+.+.- +.... -+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 4689999999999999999998742 22334444321110 111111 111110 00000 1111
Q ss_pred -HHHHHHHHHhccCcceEeecCCCCC-ChhhHHHHHhhhcCC-CCCcEEEEecCChhHHh
Q 048084 271 -SLMQRIQKHVARKKLLLVLDDVWNE-NFYKWEQFNNCLKNC-LHGSKILITTRKEAIAR 327 (967)
Q Consensus 271 -~~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iliTtr~~~v~~ 327 (967)
...-.+.+.+-.++-++++|+.-.. +......+...+... ..|.-||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2223344555567779999987432 223333344444321 23556888888766553
No 314
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.85 E-value=0.1 Score=54.92 Aligned_cols=54 Identities=17% Similarity=0.079 Sum_probs=37.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEAL 259 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 259 (967)
...++.|.|.+|+||||++.+++.... ..+-..++|++... +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 346889999999999999988776522 22134688888765 4566666665543
No 315
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.037 Score=61.81 Aligned_cols=90 Identities=17% Similarity=0.089 Sum_probs=48.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC-CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF-DEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
...+++|+|++|+||||++..++.....+.....+..++..... ...+.+....+.++.......+..++...+++. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 45799999999999999997777642222212345566554322 122233333333332222223334444444432 3
Q ss_pred cCcceEeecCCCC
Q 048084 282 RKKLLLVLDDVWN 294 (967)
Q Consensus 282 ~~r~LlvlDdv~~ 294 (967)
..=+||+|....
T Consensus 428 -~~DLVLIDTaG~ 439 (559)
T PRK12727 428 -DYKLVLIDTAGM 439 (559)
T ss_pred -cCCEEEecCCCc
Confidence 355888998854
No 316
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.12 Score=57.51 Aligned_cols=133 Identities=18% Similarity=0.236 Sum_probs=76.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
.+.-|.++|++|+|||-||+.|++. .+-.| +++..+ +++...+- ++...+.+.+++.=..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlNkYVG---------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLNKYVG---------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHHHHhh---------hHHHHHHHHHHHhhcC
Confidence 4567899999999999999999997 44444 444432 23222210 1112223333333345
Q ss_pred CcceEeecCCCCC-----Chhh------HHHHHhhhcCC--CCCcEEEEecCChhHHh-hh---C-CcceeecCCCChhh
Q 048084 283 KKLLLVLDDVWNE-----NFYK------WEQFNNCLKNC--LHGSKILITTRKEAIAR-IM---G-SIDIISINVLSEIE 344 (967)
Q Consensus 283 ~r~LlvlDdv~~~-----~~~~------~~~l~~~l~~~--~~gs~iliTtr~~~v~~-~~---~-~~~~~~l~~l~~~~ 344 (967)
-+++|+||.++.. +... ..++..-+... ..|.-||-.|..+.+.. .+ + -....-++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 6999999998531 1011 22333333332 35666666565544332 21 1 13456677778889
Q ss_pred HHHHHHHHhcC
Q 048084 345 CWSVFELLAFS 355 (967)
Q Consensus 345 ~~~l~~~~~~~ 355 (967)
-.++++..+..
T Consensus 684 R~~ILK~~tkn 694 (802)
T KOG0733|consen 684 RVAILKTITKN 694 (802)
T ss_pred HHHHHHHHhcc
Confidence 99999888753
No 317
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.77 E-value=0.27 Score=52.44 Aligned_cols=49 Identities=27% Similarity=0.203 Sum_probs=33.8
Q ss_pred eeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHH
Q 048084 334 IISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAA 383 (967)
Q Consensus 334 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (967)
++++++++.+|+..++..+...+--. .....+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~-~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLR-SRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccc-cCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998876443221 11233445666777779999644
No 318
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.76 E-value=0.029 Score=60.77 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=61.0
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
..++-+.|||..|.|||.|+-.+|+....+.. .-.....+..++-+.+.........+ ..+.+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~~~~~l----~~va~~l~ 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRGQDDPL----PQVADELA 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhCCCccH----HHHHHHHH
Confidence 35788999999999999999999986332111 00112233444433333222222222 33344455
Q ss_pred cCcceEeecCCCCCChhhHHHHHhhhcCC-CCCcEEEEecCCh
Q 048084 282 RKKLLLVLDDVWNENFYKWEQFNNCLKNC-LHGSKILITTRKE 323 (967)
Q Consensus 282 ~~r~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iliTtr~~ 323 (967)
++..||.||+++-.+..+-.-+...+... ..|. |||+|.|.
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 66779999998766655544444444422 3565 55555543
No 319
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.041 Score=53.64 Aligned_cols=122 Identities=17% Similarity=0.091 Sum_probs=60.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhc--cCCCC---C----------C
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALT--DSASN---F----------G 267 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~---~----------~ 267 (967)
...+++|+|+.|+|||||++.++... ....+.+++..........-.....+.+. .+... . -
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 34689999999999999999998742 22334444422110000000001111111 00000 0 1
Q ss_pred Ch-HHHHHHHHHHhccCcceEeecCCCCC-ChhhHHHHHhhhcCCC--CCcEEEEecCChhHHh
Q 048084 268 EF-QSLMQRIQKHVARKKLLLVLDDVWNE-NFYKWEQFNNCLKNCL--HGSKILITTRKEAIAR 327 (967)
Q Consensus 268 ~~-~~~~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~--~gs~iliTtr~~~v~~ 327 (967)
+. +...-.+.+.+-.++-++++|+.-.. +......+...+.... .|.-||++|.+.....
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 11 12222344556667889999987432 3333444544443321 2456788877765443
No 320
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.73 E-value=0.064 Score=52.84 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=30.8
Q ss_pred EEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 207 ISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 207 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
+.|.|++|+|||+||.++..... ..=..++|++... +...+.+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHHH
Confidence 67999999999999987766422 2224578887654 455555443
No 321
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.72 E-value=0.094 Score=57.18 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.4
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+||||||+.+..-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcc
Confidence 358999999999999999998874
No 322
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.72 E-value=0.011 Score=65.21 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++||++.++.+...+... .-|.|.|++|+|||++|+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHH
Confidence 35899999999999998744 34899999999999999998874
No 323
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.72 E-value=0.034 Score=59.51 Aligned_cols=58 Identities=21% Similarity=0.108 Sum_probs=41.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccc----cccCCceEEEEecCCCCHHHHHHHHHHHhcc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDV----KKYFDERIWVCVSDPFDEFRIAKAIIEALTD 261 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 261 (967)
...++-|+|++|+|||+|+.+++-.... .+.-..++||+....++..++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 5688999999999999999777532111 11224689999998888877655 5565543
No 324
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.71 E-value=0.075 Score=54.04 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=32.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
...++.|.|.+|+||||+|.+++... .+.. ..++|++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34699999999999999986555431 1222 4567777443 556666666
No 325
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.69 E-value=0.037 Score=57.01 Aligned_cols=89 Identities=25% Similarity=0.218 Sum_probs=55.8
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHH-hccC-CCCCCChHH---HHHHH
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEA-LTDS-ASNFGEFQS---LMQRI 276 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~---~~~~l 276 (967)
+..+++=|+|+.|+||||+|.+++-. .+..-..++|++....+++..+.+ ++.. +..- .....+.++ ++..+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 46789999999999999999776654 333334789999998888776644 4333 2211 111223333 33333
Q ss_pred HHHhccCcceEeecCCC
Q 048084 277 QKHVARKKLLLVLDDVW 293 (967)
Q Consensus 277 ~~~l~~~r~LlvlDdv~ 293 (967)
.+....+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 33333335688888883
No 326
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.67 E-value=0.046 Score=58.29 Aligned_cols=57 Identities=19% Similarity=0.168 Sum_probs=39.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccc---cc-cCCceEEEEecCCCCHHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDV---KK-YFDERIWVCVSDPFDEFRIAKAIIEALT 260 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 260 (967)
...++.|+|.+|+|||+|+..++..... .+ .-..++|++....++...+ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 5689999999999999999877642111 11 1235799998887777653 44555443
No 327
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.67 E-value=0.11 Score=52.18 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|..|+|||||++.+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999875
No 328
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.66 E-value=0.12 Score=57.79 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=71.6
Q ss_pred CCEEEEEEccCCCcHHH-HHHHHHcCccccccCCceEEEEecCCCCH--HHHHHHHHHHhccCCCC-------------C
Q 048084 203 GPRIISLVGMGGIGKTT-LAQFAYNNGDVKKYFDERIWVCVSDPFDE--FRIAKAIIEALTDSASN-------------F 266 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~-------------~ 266 (967)
...||.|+|..|+|||| |++.+|.+ .|.-.--|.+.++.-+ ..+.+.+.++++..... .
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~ 444 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSE 444 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCC
Confidence 34799999999999987 55777775 2322224555665444 35667777777543111 0
Q ss_pred -------CChHHHHHHHHHHhccCcceEeecCCCCCC--hhhHHHHHhhhcCCCCCcEEEEecCChh---HHhhhCCcce
Q 048084 267 -------GEFQSLMQRIQKHVARKKLLLVLDDVWNEN--FYKWEQFNNCLKNCLHGSKILITTRKEA---IARIMGSIDI 334 (967)
Q Consensus 267 -------~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~--~~~~~~l~~~l~~~~~gs~iliTtr~~~---v~~~~~~~~~ 334 (967)
.+---+.+.|....-.|--.+|+|.+++.. .+-+..+..........-|+||||-..+ .+..++....
T Consensus 445 ~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~ 524 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQ 524 (1042)
T ss_pred ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCce
Confidence 011112223333333445589999997542 2222222222223345779999988643 3444554444
Q ss_pred eecCC
Q 048084 335 ISINV 339 (967)
Q Consensus 335 ~~l~~ 339 (967)
+.+++
T Consensus 525 f~IpG 529 (1042)
T KOG0924|consen 525 FTIPG 529 (1042)
T ss_pred eeecC
Confidence 44443
No 329
>PRK05439 pantothenate kinase; Provisional
Probab=95.63 E-value=0.062 Score=56.56 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=29.7
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 184 DEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.....+.+.+.... ....+-+|+|.|.+|+||||+|+.+...
T Consensus 68 ~~~~~~~~~fl~~~--~~~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 68 QRLQAALEQFLGKN--GQKVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred HHHHHHHHHHhccc--CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444454322 2356789999999999999999888763
No 330
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.63 E-value=0.021 Score=60.24 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=24.0
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++.++|||++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999996
No 331
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.59 E-value=0.052 Score=55.39 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.0
Q ss_pred CCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 201 QKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 201 ~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+...+++|.|+.|+|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999988875
No 332
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.54 E-value=0.054 Score=56.55 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=21.9
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHc
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999977655
No 333
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.53 E-value=0.079 Score=58.87 Aligned_cols=57 Identities=26% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC-CHHHHHHHHHHHhcc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF-DEFRIAKAIIEALTD 261 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~ 261 (967)
.+.+|.++|.+|+||||+|..++.... ..-..+..|++.... ...+.++.+++.++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 468999999999999999988886532 221244555554321 223445555555543
No 334
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.8 Score=45.06 Aligned_cols=51 Identities=27% Similarity=0.313 Sum_probs=36.0
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 177 SEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++=|-+-..++|.+...-+-.. .-+.++-|.++|++|.|||.||+.|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 35667776666776665322110 1235678999999999999999999997
No 335
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.52 E-value=0.068 Score=61.72 Aligned_cols=152 Identities=11% Similarity=0.054 Sum_probs=81.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
..++|....+.++.+.+..... ....|.|+|..|+||+.+|+.+..... ..-...+.+++.... .+.+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~~--~~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASIP--DDVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccCC--HHHHHH--
Confidence 4689999888888877754332 234588999999999999999765311 111233556665533 222221
Q ss_pred HHhccCCCC-CCChHHH-HHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecCCh
Q 048084 257 EALTDSASN-FGEFQSL-MQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTRKE 323 (967)
Q Consensus 257 ~~l~~~~~~-~~~~~~~-~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr~~ 323 (967)
.+.+.... .....+. ...+. ....=.|+||+++.........+..++..+. ...+||.||...
T Consensus 274 -elFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred -HhcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 22221110 0000000 00011 1123457899998776555566777665431 124788877653
Q ss_pred hHHhh----h-----C--CcceeecCCCCh
Q 048084 324 AIARI----M-----G--SIDIISINVLSE 342 (967)
Q Consensus 324 ~v~~~----~-----~--~~~~~~l~~l~~ 342 (967)
-.... + . ....+.++||.+
T Consensus 350 l~~l~~~g~f~~dL~~rL~~~~i~lPpLre 379 (520)
T PRK10820 350 LVELVQKGEFREDLYYRLNVLTLNLPPLRD 379 (520)
T ss_pred HHHHHHcCCccHHHHhhcCeeEEeCCCccc
Confidence 21100 0 0 124677888875
No 336
>PRK07667 uridine kinase; Provisional
Probab=95.52 E-value=0.018 Score=56.86 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 186 KNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665433 35589999999999999999888875
No 337
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.50 E-value=0.048 Score=58.74 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=39.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccc----cCCceEEEEecCCCCHHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKK----YFDERIWVCVSDPFDEFRIAKAIIEAL 259 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 259 (967)
...++-|+|++|+|||++|.+++-...... .=..++||+....++...+.+ +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 568999999999999999977764321111 114789999988877776654 44444
No 338
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.49 E-value=0.19 Score=46.49 Aligned_cols=82 Identities=12% Similarity=0.219 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhcccC-cHHHHHHHHHHHHHhhhhhhhH
Q 048084 2 VDAIISPLLDQLISVAVEEAKEQVRLVTGVGKEVKKLTSTLRAIQAVLHDAEKRQVK-EETVRLWLDQLRDACYDMEDVL 80 (967)
Q Consensus 2 a~~~vs~v~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~~~~-~~~~~~wl~~l~~~~~~~ed~l 80 (967)
|+-+.+++++...+.+...+.+..+....++.-+++|..+++.|.-++++.+.-... +..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 556666666666666666888888888899999999999999999999998875322 2233677889999999999999
Q ss_pred HHH
Q 048084 81 GEW 83 (967)
Q Consensus 81 d~~ 83 (967)
..|
T Consensus 83 ~k~ 85 (147)
T PF05659_consen 83 EKC 85 (147)
T ss_pred HHh
Confidence 886
No 339
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.43 E-value=0.15 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998875
No 340
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.42 E-value=0.077 Score=54.43 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=35.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
...++.|.|.+|+|||++|.++.... . ..-..++||+... +..++.+.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~~ 69 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNMA 69 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHHH
Confidence 56899999999999999997765431 1 2345688988765 5566666543
No 341
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.42 E-value=0.035 Score=55.72 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38899999999999999988874
No 342
>PTZ00035 Rad51 protein; Provisional
Probab=95.41 E-value=0.059 Score=58.07 Aligned_cols=57 Identities=21% Similarity=0.167 Sum_probs=38.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccc----cccCCceEEEEecCCCCHHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDV----KKYFDERIWVCVSDPFDEFRIAKAIIEALT 260 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 260 (967)
...++.|+|.+|+|||+|+..++-.... .+.-..++|++....++...+ .++++.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 5689999999999999999877643221 112235679998777776664 44455543
No 343
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.41 E-value=0.054 Score=55.59 Aligned_cols=88 Identities=20% Similarity=0.184 Sum_probs=53.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCC-ceEEEEecCC-CCHHHHHHHHHHHhccC-------CCCCCChHH--
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD-ERIWVCVSDP-FDEFRIAKAIIEALTDS-------ASNFGEFQS-- 271 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 271 (967)
+.+.++|.|.+|+|||||++.+++. .+.+|. .++++-+++. ..+.++.+.+.+.-..+ ..+.....+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4568999999999999999999986 444453 4556666553 34455666554421111 111111111
Q ss_pred ---HHHHHHHHh--c-cCcceEeecCC
Q 048084 272 ---LMQRIQKHV--A-RKKLLLVLDDV 292 (967)
Q Consensus 272 ---~~~~l~~~l--~-~~r~LlvlDdv 292 (967)
..-.+.+++ + ++..|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 222344444 3 78999999998
No 344
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.37 E-value=0.13 Score=61.00 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=81.5
Q ss_pred ccccchhhHHHHHHHHhcCCCC------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHH
Q 048084 178 EIFGREDEKNDLVNRLICEGSK------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRI 251 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 251 (967)
++.|.+...+++.+.+...... ...-.+-|.|+|++|+|||++|+.++.. ....| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 5677776666655544321100 0112345999999999999999999875 22222 2222221 1
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC----------hhhHHH-HHhh---hcCC--CCCcE
Q 048084 252 AKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN----------FYKWEQ-FNNC---LKNC--LHGSK 315 (967)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~----------~~~~~~-l~~~---l~~~--~~gs~ 315 (967)
.. ... ......+...+.......+.++++|+++... ...+.. +... +... ..+.-
T Consensus 222 ~~----~~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 VE----MFV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred HH----hhh-----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 11 000 0111223333333334568899999985421 111222 2222 2211 23444
Q ss_pred EEEecCChhHHh-hh----CCcceeecCCCChhhHHHHHHHHhcC
Q 048084 316 ILITTRKEAIAR-IM----GSIDIISINVLSEIECWSVFELLAFS 355 (967)
Q Consensus 316 iliTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~ 355 (967)
+|.||...+... .. .....+.++.-+.++..+++..+...
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 555666554322 11 12457888888888888888877643
No 345
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.36 E-value=0.051 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+|+|.|.+|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999988875
No 346
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.35 E-value=0.22 Score=51.66 Aligned_cols=128 Identities=13% Similarity=0.056 Sum_probs=66.4
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhcc-CC
Q 048084 185 EKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTD-SA 263 (967)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~ 263 (967)
..+.+...+... ....-++|+|+.|+|||||.+.+.... ....+.+++.-..-... +-..++...... ..
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKVGIV-DERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEeecc-hhHHHHHHHhccccc
Confidence 344555555422 234689999999999999999999852 22334444432111101 001222222111 00
Q ss_pred C------C-CCChHHHHHHHHHHh-ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHHh
Q 048084 264 S------N-FGEFQSLMQRIQKHV-ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIAR 327 (967)
Q Consensus 264 ~------~-~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~ 327 (967)
. + ...... ...+...+ ...+-++++|++... ..+..+...+. .|..+|+||.+..+..
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 0 0 011111 11223222 246889999998543 44455544443 4777999999765543
No 347
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.35 E-value=0.02 Score=60.18 Aligned_cols=52 Identities=31% Similarity=0.446 Sum_probs=44.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...|+|.++.++++++.+...+......-+++.++|+.|.||||||+.+-+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999998766544567899999999999999999887763
No 348
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.32 E-value=0.04 Score=50.40 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=31.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhcc
Q 048084 206 IISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTD 261 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 261 (967)
+|.|.|++|+||||+|+.++++.... +| +.-.++++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCC
Confidence 68999999999999999999862211 12 233577888887764
No 349
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.015 Score=53.11 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNG 228 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~ 228 (967)
.--|+|.|++|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3568999999999999999999753
No 350
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.27 E-value=0.16 Score=56.23 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=21.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998777654
No 351
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.27 E-value=0.067 Score=57.43 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=40.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccc---cc-cCCceEEEEecCCCCHHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDV---KK-YFDERIWVCVSDPFDEFRIAKAIIEALT 260 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 260 (967)
...++-|+|.+|+|||+||..++-.... .+ .-..++||+....++.+++. ++++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 5678999999999999999776643111 11 11368999999888877664 4566554
No 352
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.28 Score=48.07 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCcc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGD 229 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~ 229 (967)
..-+.+|.|+.|+||||||..+..++.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999998753
No 353
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.25 E-value=0.063 Score=53.32 Aligned_cols=29 Identities=41% Similarity=0.491 Sum_probs=24.4
Q ss_pred CCCCEEEEEEccCCCcHHHHHHHHHcCcc
Q 048084 201 QKGPRIISLVGMGGIGKTTLAQFAYNNGD 229 (967)
Q Consensus 201 ~~~~~vv~i~G~~GiGKTtLa~~v~~~~~ 229 (967)
..++.+|.++||+|+||||..++++.+..
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~ 44 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLH 44 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHh
Confidence 34677899999999999999999988633
No 354
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.25 E-value=0.19 Score=49.24 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|.|..|+|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999975
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.077 Score=50.52 Aligned_cols=119 Identities=19% Similarity=0.167 Sum_probs=62.4
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
..+++|+|..|.|||||++.+.... ....+.+++......... .......+..- .+...-+...-.+.+.+..+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~-~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLP--LEELRRRIGYV-PQLSGGQRQRVALARALLLN 98 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCC--HHHHHhceEEE-eeCCHHHHHHHHHHHHHhcC
Confidence 3689999999999999999998852 234555555432211100 00111111110 00111122233345555566
Q ss_pred cceEeecCCCCC-ChhhHHHHHhhhcCC-CCCcEEEEecCChhHHhh
Q 048084 284 KLLLVLDDVWNE-NFYKWEQFNNCLKNC-LHGSKILITTRKEAIARI 328 (967)
Q Consensus 284 r~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iliTtr~~~v~~~ 328 (967)
+-++++|+.-.. +......+...+... ..+.-++++|.+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 889999988532 223334444443321 124567888877655543
No 356
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.21 E-value=0.22 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|..|+|||||++.++..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 357
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.19 E-value=0.13 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....|+|+|++|+|||||.+.++.-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 358
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.18 E-value=0.2 Score=48.50 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=27.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEe
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCV 242 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 242 (967)
...|++|+|++|+|||||.+.+..- ...=++.+||..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECC
Confidence 4469999999999999999988874 333345666653
No 359
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.18 E-value=0.085 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|.+|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999885
No 360
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.16 E-value=0.19 Score=60.07 Aligned_cols=131 Identities=17% Similarity=0.087 Sum_probs=72.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
..++|....+.++.+.+..... ....|.|+|..|+||+++|+.+.+.... .-...+.|++.... ...+..++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCC-hHHHHHHhc
Confidence 4588999888888887765432 2345889999999999999999875211 11223445555432 122222222
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC---C--------CcEEEEecCC
Q 048084 257 EALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL---H--------GSKILITTRK 322 (967)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iliTtr~ 322 (967)
+....... ......+. ....=.|+||++..........+...+.... . ..+||.||..
T Consensus 398 ----g~~~~~~~-~~~~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 ----GSDRTDSE-NGRLSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred ----CCCCcCcc-CCCCCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 21100000 00000000 1224468999998776666666777665432 1 3467776654
No 361
>PTZ00301 uridine kinase; Provisional
Probab=95.16 E-value=0.029 Score=55.76 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.4
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999888764
No 362
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.15 E-value=0.03 Score=56.10 Aligned_cols=60 Identities=25% Similarity=0.270 Sum_probs=36.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 185 EKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
+..++++.+.... ++..+|+|.|+||+|||||...+....+.+++=-.++-|+=+.+++-
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 4556666665443 36789999999999999999777776443333334555554555543
No 363
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.15 E-value=0.3 Score=48.95 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|.|..|+|||||++.+...
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998864
No 364
>PRK10867 signal recognition particle protein; Provisional
Probab=95.14 E-value=0.23 Score=55.13 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=20.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+.+|.++|.+|+||||.|..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999988666653
No 365
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.14 E-value=0.15 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999998875
No 366
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.12 E-value=0.015 Score=53.27 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 048084 207 ISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 207 v~i~G~~GiGKTtLa~~v~~~ 227 (967)
|+|.|.+|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998875
No 367
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.11 E-value=0.19 Score=59.54 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....|+|+|..|+|||||++.+..-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998873
No 368
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.15 Score=60.64 Aligned_cols=122 Identities=11% Similarity=0.174 Sum_probs=74.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCC--CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQ--KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~--~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
.++|.++.+..|.+.+........ .....+.+.|+.|+|||.||+.++.. +-+..+..+-++.++ ... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-h
Confidence 478888899999888875432111 25678899999999999999988874 323333444444443 222 2
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhccCcc-eEeecCCCCCChhhHHHHHhhhcCC
Q 048084 256 IEALTDSASNFGEFQSLMQRIQKHVARKKL-LLVLDDVWNENFYKWEQFNNCLKNC 310 (967)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~-LlvlDdv~~~~~~~~~~l~~~l~~~ 310 (967)
.+..+.+ +.... .+....+.+.++.++| ++.|||++-.+......+...+..+
T Consensus 634 skligsp-~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLIGSP-PGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhccCCC-ccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 2222222 11111 1222345556666666 6669999887766666666776654
No 369
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.11 E-value=0.26 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999874
No 370
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.23 Score=49.52 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|..|+|||||++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3469999999999999999998875
No 371
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.10 E-value=0.032 Score=50.44 Aligned_cols=41 Identities=22% Similarity=0.092 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCc
Q 048084 184 DEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNG 228 (967)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~ 228 (967)
++.+++.+.|...- ....+|.+.|.-|+||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45556666654322 134689999999999999999999863
No 372
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.09 E-value=0.22 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|.|+.|.|||||++.+...
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4469999999999999999999874
No 373
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.09 E-value=0.17 Score=51.31 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 374
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.07 E-value=0.22 Score=51.39 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=34.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
...++.|.|.+|+|||++|.+++.+.... +=..++|++... +..++...++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC--CHHHHHHHHH
Confidence 44799999999999999998776642222 123577887654 3445555443
No 375
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.05 E-value=0.017 Score=45.90 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+++|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988875
No 376
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.04 E-value=0.083 Score=56.83 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=39.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCcccc----ccCCceEEEEecCCCCHHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVK----KYFDERIWVCVSDPFDEFRIAKAIIEALT 260 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 260 (967)
...++-|+|++|+|||+++.+++-..... ..=..++||+....++...+. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 46899999999999999997776542211 011278999998888777654 3444443
No 377
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.58 Score=45.94 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=84.0
Q ss_pred ccccc-hhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 178 EIFGR-EDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 178 ~~vGR-~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
++||+ ++.+++|.+.+.-+... .-.+++-+.++|++|.|||-||+.|+++ ....|+.++..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 57765 77777777766332210 1236778999999999999999999986 22456666642
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCC-----------Chh---hHHHHHhhhcCC--CC
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNE-----------NFY---KWEQFNNCLKNC--LH 312 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~-----------~~~---~~~~l~~~l~~~--~~ 312 (967)
++.+..+.+ -...++.+.-.. ..-+-++++|.+++. +.+ ..-++...+... .+
T Consensus 216 elvqk~ige----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 ELVQKYIGE----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred HHHHHHhhh----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 233222110 011111111111 234678888887541 111 111222222222 34
Q ss_pred CcEEEEecCChhHHhh-h----CCcceeecCCCChhhHHHHHHHHh
Q 048084 313 GSKILITTRKEAIARI-M----GSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 313 gs~iliTtr~~~v~~~-~----~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
.-+||.+|..-.+... + .-...++.++-+++...++++-+.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 5677776654333221 1 124578888888887777776553
No 378
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.02 E-value=0.076 Score=52.76 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=58.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCC---ChHHHHHHHHHHh
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFG---EFQSLMQRIQKHV 280 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~l 280 (967)
.+++.|.|+.|.||||+.+.+....-.. + .-.+|.+.. ..-.+...+...+........ ....-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la-~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA-Q--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH-H--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999998876431111 1 011221111 001122222222222111101 1111111122222
Q ss_pred --ccCcceEeecCCCCCC-hhh----HHHHHhhhcCCCCCcEEEEecCChhHHhhhC
Q 048084 281 --ARKKLLLVLDDVWNEN-FYK----WEQFNNCLKNCLHGSKILITTRKEAIARIMG 330 (967)
Q Consensus 281 --~~~r~LlvlDdv~~~~-~~~----~~~l~~~l~~~~~gs~iliTtr~~~v~~~~~ 330 (967)
..++-|+++|+..... ..+ ...+...+.. .+..+|++|...+.+....
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 3568899999984421 111 1122333332 2778999999988877654
No 379
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.045 Score=58.05 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=52.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCC-----CCChHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASN-----FGEFQSLMQRIQ 277 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 277 (967)
...++.|-|.+|+|||||.-+++.. ....- .++||+..+. ...+ +--++.++..... +.+.+...+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3478999999999999999888876 33333 7889876553 2222 1223444432222 234444444444
Q ss_pred HHhccCcceEeecCCCC
Q 048084 278 KHVARKKLLLVLDDVWN 294 (967)
Q Consensus 278 ~~l~~~r~LlvlDdv~~ 294 (967)
+ .++-++|+|-+++
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 3 5788999999865
No 380
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.02 E-value=0.026 Score=52.53 Aligned_cols=36 Identities=28% Similarity=0.172 Sum_probs=27.0
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEE
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVC 241 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 241 (967)
..+|.|.|.+|+||||||+.+.+. ....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999986 333334566665
No 381
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.01 Score=34.69 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=8.3
Q ss_pred CcEEEccCCCCccccchH
Q 048084 625 LKYLNLFCQREIEKLPET 642 (967)
Q Consensus 625 L~~L~Ls~~~~i~~lp~~ 642 (967)
|++|+|++|. ++.+|.+
T Consensus 2 L~~Ldls~n~-l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSS 18 (22)
T ss_dssp ESEEEETSSE-ESEEGTT
T ss_pred ccEEECCCCc-CEeCChh
Confidence 4455555554 4444443
No 382
>PRK06547 hypothetical protein; Provisional
Probab=94.99 E-value=0.033 Score=53.50 Aligned_cols=26 Identities=35% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|.|.+|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 383
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.38 Score=45.51 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+.|.|+.|+|||||.+.++.-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGL 51 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGL 51 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcc
Confidence 57899999999999999999874
No 384
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.98 E-value=0.18 Score=47.89 Aligned_cols=116 Identities=18% Similarity=0.092 Sum_probs=60.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCce--EEEEecCCCCHHHHHHHHHHHhc-----cC----CCCCC----Ch
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDER--IWVCVSDPFDEFRIAKAIIEALT-----DS----ASNFG----EF 269 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~--~wv~~~~~~~~~~~~~~i~~~l~-----~~----~~~~~----~~ 269 (967)
..|-|++..|.||||.|.-.+-.. ....+.+. =|+...........+..+ .+. .. ..+.. ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 578888889999999995444321 12222211 133333223333444332 111 00 00000 01
Q ss_pred HHHHHHHHHHhccCc-ceEeecCCCC---CChhhHHHHHhhhcCCCCCcEEEEecCCh
Q 048084 270 QSLMQRIQKHVARKK-LLLVLDDVWN---ENFYKWEQFNNCLKNCLHGSKILITTRKE 323 (967)
Q Consensus 270 ~~~~~~l~~~l~~~r-~LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iliTtr~~ 323 (967)
.+.....++.+...+ =++|||.+-. ...-..+++...+.....+..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 122333444444444 4999999831 11233456777776656677999999985
No 385
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.98 E-value=0.12 Score=60.08 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=63.0
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccc-cccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCC---CChHHHHHHHHHH
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDV-KKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNF---GEFQSLMQRIQKH 279 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~ 279 (967)
.++..|.|.+|.||||+++.+...... ...-...+.+...+......+.+.+...+..-.... .........+++.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 468999999999999999887764211 111124566665554444445444433322110000 0000112333443
Q ss_pred hcc------------Cc---ceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh
Q 048084 280 VAR------------KK---LLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA 324 (967)
Q Consensus 280 l~~------------~r---~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~ 324 (967)
|.- .+ =++|+|++...+...+..+...++ .++|+|+---..+
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~Q 303 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQ 303 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhh
Confidence 321 11 289999997665555555555555 4678877654433
No 386
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.29 Score=56.64 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=83.5
Q ss_pred ccccchhhHHHHHHHH---hcCCCC----CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHH
Q 048084 178 EIFGREDEKNDLVNRL---ICEGSK----EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFR 250 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L---~~~~~~----~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (967)
++.|-+...+.+.+.+ ...... .-...+.+.++|++|.|||.||+.+++. ....| +.+... +
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~----~ 311 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS----E 311 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH----H
Confidence 4556555555554443 222110 1235668999999999999999999994 33333 222221 1
Q ss_pred HHHHHHHHhccCCCCCCChHHH-HHHHHHHhccCcceEeecCCCCC-------Ch----hhHHHHHhhhcCCC--CCcEE
Q 048084 251 IAKAIIEALTDSASNFGEFQSL-MQRIQKHVARKKLLLVLDDVWNE-------NF----YKWEQFNNCLKNCL--HGSKI 316 (967)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~r~LlvlDdv~~~-------~~----~~~~~l~~~l~~~~--~gs~i 316 (967)
++... ..+.+.. ...+...-+..+..|++|+++.- .. ....++...+.... .+..|
T Consensus 312 l~sk~----------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 312 LLSKW----------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred Hhccc----------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 11100 0111222 22333333567899999998431 00 12233444443222 33334
Q ss_pred EEecCChhHHh-hh----CCcceeecCCCChhhHHHHHHHHhcC
Q 048084 317 LITTRKEAIAR-IM----GSIDIISINVLSEIECWSVFELLAFS 355 (967)
Q Consensus 317 liTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~ 355 (967)
|-||....... .+ .-...+.+++-+.++..+.|..+...
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 44444432222 11 12457889999999999999988753
No 387
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.94 E-value=0.28 Score=49.08 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999874
No 388
>PRK08233 hypothetical protein; Provisional
Probab=94.93 E-value=0.021 Score=56.02 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=22.0
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999875
No 389
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.93 E-value=0.2 Score=51.79 Aligned_cols=103 Identities=10% Similarity=0.062 Sum_probs=54.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC-CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc-
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF-DEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA- 281 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 281 (967)
..+++++|.+|+||||+++.+.... ...=..+.+++..... ...+-++...+.++.+.....+...+...+...-.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 3689999999999999998777642 1111245666655332 11122222233333221122344444444443322
Q ss_pred cCcceEeecCCCCC--ChhhHHHHHhhhc
Q 048084 282 RKKLLLVLDDVWNE--NFYKWEQFNNCLK 308 (967)
Q Consensus 282 ~~r~LlvlDdv~~~--~~~~~~~l~~~l~ 308 (967)
.+.=++++|..... +...++++...+.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 24568899988654 2334555555544
No 390
>PRK05973 replicative DNA helicase; Provisional
Probab=94.92 E-value=0.1 Score=52.71 Aligned_cols=50 Identities=16% Similarity=0.063 Sum_probs=34.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
...++.|.|.+|+|||++|.++..... ..-..++|++... +..++...+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEe--s~~~i~~R~~ 112 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEY--TEQDVRDRLR 112 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeC--CHHHHHHHHH
Confidence 446899999999999999987765422 2234577887665 3555555543
No 391
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.24 Score=49.00 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|..|+|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999863
No 392
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.92 E-value=0.019 Score=56.96 Aligned_cols=22 Identities=45% Similarity=0.526 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
||+|.|.+|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998875
No 393
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.90 E-value=0.049 Score=66.72 Aligned_cols=198 Identities=15% Similarity=0.126 Sum_probs=99.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCcccc--ccCCceEEEEecCCC----CHH--HHHHHHHHHhccCCCCCCChHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVK--KYFDERIWVCVSDPF----DEF--RIAKAIIEALTDSASNFGEFQSLMQ 274 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~----~~~--~~~~~i~~~l~~~~~~~~~~~~~~~ 274 (967)
...-+.|+|.+|.||||+..+++-....+ ..=+..+|+.+.... ... .+..-+...+..... ..+...
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~ 296 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIE 296 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhH
Confidence 34479999999999999997776531111 111344555443111 111 122222222222111 122222
Q ss_pred HHHHHhccCcceEeecCCCCCChh----hHHHHHhhhcCCCCCcEEEEecCChhHHhhhCCcceeecCCCChhhHHHHHH
Q 048084 275 RIQKHVARKKLLLVLDDVWNENFY----KWEQFNNCLKNCLHGSKILITTRKEAIARIMGSIDIISINVLSEIECWSVFE 350 (967)
Q Consensus 275 ~l~~~l~~~r~LlvlDdv~~~~~~----~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~~~~~~~~l~~l~~~~~~~l~~ 350 (967)
...+.++..++++++|.++..... ....+..+++. -+.+++|+|+|.............+++..+.++.......
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 225677888999999998654221 12223344443 3577899999976655544444456666666655543333
Q ss_pred -----HHhcCCCCCccch---hHHHH---HHHHHHHcCCChhHHHHHHHHHccC-----CCHHHHHHHHhh
Q 048084 351 -----LLAFSGKSMEERE---NLEKI---GREIVGKCKGLPLAAKTIASLLRSK-----NTRKEWQNILES 405 (967)
Q Consensus 351 -----~~~~~~~~~~~~~---~~~~~---~~~i~~~~~g~Plai~~~~~~l~~~-----~~~~~w~~~l~~ 405 (967)
............. ....+ ...-++.....|+++.+.+..-... .....|+..++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~ 446 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDA 446 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHH
Confidence 1111111101111 11111 1223333488899999988665422 234555555553
No 394
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.89 E-value=0.033 Score=56.52 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHH
Q 048084 187 NDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (967)
.+++..+... .++..+|+|.|.||+|||||...+.....-+++--.|+=|+-+.+++--.++
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 4555555433 3578899999999999999997777664444554556666666666554444
No 395
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.88 E-value=0.022 Score=57.07 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999874
No 396
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.86 E-value=0.022 Score=53.34 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998853
No 397
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.86 E-value=0.41 Score=49.13 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998864
No 398
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.84 E-value=0.35 Score=47.84 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|.|+.|.|||||.+.+..-
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 399
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.84 E-value=0.27 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|.|+.|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 400
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.83 E-value=0.11 Score=52.83 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=65.3
Q ss_pred ccccchhhHHHHHHHHhcCC-CCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccC-CceEEEEecCCCCHHHHHHHH
Q 048084 178 EIFGREDEKNDLVNRLICEG-SKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF-DERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~-~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 255 (967)
.++|..-..+.|+..+.+-- +..+.++-+++.+|.+|.||..+++.+++.....+.- +.|-.......+....-.+.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~- 161 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIED- 161 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHH-
Confidence 46676555555555543211 1124578899999999999999999888863222111 11111111111111100000
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCCChhhHHHHHhhhc
Q 048084 256 IEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNENFYKWEQFNNCLK 308 (967)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~~~~~~~~l~~~l~ 308 (967)
-.+++...++..+ .-+|-|+|+|+++-....-.+.+..++.
T Consensus 162 ------------Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 162 ------------YKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred ------------HHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1123444444444 3579999999998776666777777766
No 401
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.37 Score=55.01 Aligned_cols=183 Identities=16% Similarity=0.140 Sum_probs=91.7
Q ss_pred CCCCccccchhhHHHH---HHHHhcCCCC---CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 174 IDESEIFGREDEKNDL---VNRLICEGSK---EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l---~~~L~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
....+.-|.++..+++ ++.|..+... ...-++-|.++|++|.|||.||+.++.+..+ .| .+.|...
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V--PF-----f~iSGS~- 218 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PF-----FSISGSD- 218 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC--Cc-----eeccchh-
Confidence 4456678987655554 5555433210 1235788999999999999999999997332 22 2222210
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCC----------ChhhHHH----HHhhhcCCC--
Q 048084 248 EFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNE----------NFYKWEQ----FNNCLKNCL-- 311 (967)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~----------~~~~~~~----l~~~l~~~~-- 311 (967)
+ ++.+- ........+...+..+.-++++++|.++.. ..+.+++ +........
T Consensus 219 ---F----VemfV-----GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 219 ---F----VEMFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ---h----hhhhc-----CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 0 00000 011122333444444555889999877431 1233443 333333333
Q ss_pred CCcEEEEecCChhHHh-h----hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChh
Q 048084 312 HGSKILITTRKEAIAR-I----MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPL 381 (967)
Q Consensus 312 ~gs~iliTtr~~~v~~-~----~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 381 (967)
.|-.|+-.|..+.|.. . -.....+.++.-+-....++++-++....- ...-+ ...|++.+-|.--
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~Vd----l~~iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDVD----LKKIARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcCC----HHHHhhhCCCccc
Confidence 2322332333333322 1 122446667766667777777755533221 11222 2236777766543
No 402
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.81 E-value=0.025 Score=56.88 Aligned_cols=25 Identities=44% Similarity=0.660 Sum_probs=23.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+..+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998875
No 403
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.80 E-value=0.15 Score=53.20 Aligned_cols=90 Identities=21% Similarity=0.171 Sum_probs=49.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC-HHHHHHHHHHHhccCC---CCCCChHH-HHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD-EFRIAKAIIEALTDSA---SNFGEFQS-LMQRIQ 277 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l~ 277 (967)
..+++.++|++|+||||++..++... ...-..+..+++..... ..+-++...+..+... ....+... ....+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 56899999999999999997777642 22223566666553211 1233333444443221 11122222 233444
Q ss_pred HHhccCcceEeecCCCC
Q 048084 278 KHVARKKLLLVLDDVWN 294 (967)
Q Consensus 278 ~~l~~~r~LlvlDdv~~ 294 (967)
.......=++++|-...
T Consensus 149 ~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 149 KAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHCCCCEEEEeCCCC
Confidence 43334455888997754
No 404
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.046 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 405
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.79 E-value=0.27 Score=49.51 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+++|+|+.|+|||||++.++..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999864
No 406
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.71 Score=46.77 Aligned_cols=96 Identities=23% Similarity=0.303 Sum_probs=59.2
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGS------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFR 250 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (967)
+++.|-+...+.|.+...-+-. .....-+-|.++|++|.|||.||+.|+.... ..|++++.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehH----H
Confidence 4567888888888777532210 0122357899999999999999999998622 223444432 1
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCC
Q 048084 251 IAKAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVW 293 (967)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~ 293 (967)
++....+ +.+.++..+-+.. .+++-+|++|.++
T Consensus 202 ----LvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 202 ----LVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ----HHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 2222211 2345555555544 4678899999885
No 407
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.78 E-value=0.25 Score=53.04 Aligned_cols=105 Identities=18% Similarity=0.160 Sum_probs=65.3
Q ss_pred CCEEEEEEccCCCcHHHH-HHHHHcCccccccCCceEEEEecCC-CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTL-AQFAYNNGDVKKYFDERIWVCVSDP-FDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV 280 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtL-a~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 280 (967)
..++|.++|+.|+||||- |+.+++.. ....=..+..|+.... ....+-++..++-++.+-....+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 478999999999999864 45444431 1222245677776654 2445556666777776655556666766666554
Q ss_pred ccCcceEeecCCCCC--ChhhHHHHHhhhcCC
Q 048084 281 ARKKLLLVLDDVWNE--NFYKWEQFNNCLKNC 310 (967)
Q Consensus 281 ~~~r~LlvlDdv~~~--~~~~~~~l~~~l~~~ 310 (967)
+.. =++.+|-+... +.....++..++...
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 333 46777877543 334566677777655
No 408
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.77 E-value=0.02 Score=55.12 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=22.2
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999986
No 409
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=94.73 E-value=0.042 Score=57.85 Aligned_cols=115 Identities=16% Similarity=0.232 Sum_probs=61.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC-----ccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCC-CCCh-HHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN-----GDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASN-FGEF-QSLMQR 275 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~-----~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~-~~~~~~ 275 (967)
.++-+.|+|--|+|||+|.-.+|.. .+.+-||..- ..++..-..++-.+-+...+. ...+ -+-+..
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~f-------M~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~ 185 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGF-------MLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPV 185 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHH-------HHHHHHHHHHHHHhccccCccccccccCCccHH
Confidence 3789999999999999999999953 1111222110 011222222222232221111 0000 022334
Q ss_pred HHHHhccCcceEeecCCCCCChhhHHHHHhhhcC-CCCCcEEEEecCChhH
Q 048084 276 IQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKN-CLHGSKILITTRKEAI 325 (967)
Q Consensus 276 l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~iliTtr~~~v 325 (967)
+.......-+||.||+++-.+..+...++..+.. ..+|. |+|.|.++..
T Consensus 186 vA~eIa~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~Gv-VlvATSNR~P 235 (467)
T KOG2383|consen 186 VADEIAEEAILLCFDEFQVTDVADAMILKRLFEHLFKNGV-VLVATSNRAP 235 (467)
T ss_pred HHHHHhhhceeeeechhhhhhHHHHHHHHHHHHHHHhCCe-EEEEeCCCCh
Confidence 4444455699999999987765555555555443 23465 6666655543
No 410
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.71 E-value=0.14 Score=56.60 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=50.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccC------CCCCCChH-----H
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDS------ASNFGEFQ-----S 271 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~-----~ 271 (967)
....++|+|..|+|||||++.+..... ...+++++......++.++....+...... ..+..... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 446899999999999999998887422 223455554334445555554444433111 11111111 1
Q ss_pred HHHHHHHHh--ccCcceEeecCC
Q 048084 272 LMQRIQKHV--ARKKLLLVLDDV 292 (967)
Q Consensus 272 ~~~~l~~~l--~~~r~LlvlDdv 292 (967)
..-.+.+++ +++..|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222234444 478999999998
No 411
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.37 Score=49.27 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+...
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999875
No 412
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.70 E-value=0.53 Score=60.18 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++-|.++|++|.|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999987
No 413
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.70 E-value=0.02 Score=54.99 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=52.2
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCcccc-ccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVK-KYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
..++.+.|+.|+|||.||+.+.+. .. +.....+-++++......+.-..+-..++.. .. .+. ..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~-~~---------~v~---~~ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSP-PG---------YVG---AE 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHT-TC---------HHH---HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccccchHHhhhhhhhhcc-cc---------eee---cc
Confidence 468899999999999999998885 33 3344566666665443111111111111110 00 000 01
Q ss_pred CcceEeecCCCCCCh-----------hhHHHHHhhhcC
Q 048084 283 KKLLLVLDDVWNENF-----------YKWEQFNNCLKN 309 (967)
Q Consensus 283 ~r~LlvlDdv~~~~~-----------~~~~~l~~~l~~ 309 (967)
..-+++||+++-... .-|..+...+..
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 122999999987766 667777776643
No 414
>PRK06762 hypothetical protein; Provisional
Probab=94.68 E-value=0.026 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+.+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998875
No 415
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.68 E-value=0.32 Score=48.90 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.++.-
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999974
No 416
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.67 E-value=0.16 Score=58.49 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=71.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
..++|+...+.++.+.+..... ....|.|.|.+|+|||++|+.+.+... ..-...+.+++... +...+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~s~--~~~~~~i~i~c~~~-~~~~~~~--- 207 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRHSP--RAKAPFIALNMAAI-PKDLIES--- 207 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhcCC--CCCCCeEeeeCCCC-CHHHHHH---
Confidence 3589999888888877754322 345688999999999999999887521 11122344555443 2222222
Q ss_pred HHhccCCCCC-CChHHH-HHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecCC
Q 048084 257 EALTDSASNF-GEFQSL-MQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTRK 322 (967)
Q Consensus 257 ~~l~~~~~~~-~~~~~~-~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr~ 322 (967)
.+.+..... ...... ...+. ....=-++||++..........+..++.... ...+||+||..
T Consensus 208 -~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 282 (469)
T PRK10923 208 -ELFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQ 282 (469)
T ss_pred -HhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCC
Confidence 221111100 000000 00000 1112256889998776666666777665432 12388888864
No 417
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.67 E-value=0.22 Score=46.70 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999988875
No 418
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.65 E-value=0.018 Score=50.56 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 048084 207 ISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 207 v~i~G~~GiGKTtLa~~v~~~ 227 (967)
|.|+|++|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998876
No 419
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.64 E-value=0.14 Score=53.28 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=30.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSD 244 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 244 (967)
...++.|.|.+|+|||++|.+++... ...=..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 56799999999999999998765532 12234678888764
No 420
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.60 E-value=0.89 Score=42.28 Aligned_cols=126 Identities=19% Similarity=0.193 Sum_probs=71.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcc-------------------ccccC--CceEEE--Ee------------------c
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGD-------------------VKKYF--DERIWV--CV------------------S 243 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~-------------------~~~~f--~~~~wv--~~------------------~ 243 (967)
..|+|+|+.|+|||||....+.-.+ -+..| ..+-|| +. .
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 4799999999999999976664211 00111 111122 11 1
Q ss_pred C--CCCHHHHHHHHHHHhccCC-----CC-CCChHHHHHHHHHHhccCcceEeecCCC-CCChhhHHHHHhhhc--CCCC
Q 048084 244 D--PFDEFRIAKAIIEALTDSA-----SN-FGEFQSLMQRIQKHVARKKLLLVLDDVW-NENFYKWEQFNNCLK--NCLH 312 (967)
Q Consensus 244 ~--~~~~~~~~~~i~~~l~~~~-----~~-~~~~~~~~~~l~~~l~~~r~LlvlDdv~-~~~~~~~~~l~~~l~--~~~~ 312 (967)
. ..+.....+..+.+++... +. ...-++..-.|.+.+...+-+++-|.-- +.+...-+.+...+- +...
T Consensus 117 ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~ 196 (228)
T COG4181 117 GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRER 196 (228)
T ss_pred CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhc
Confidence 1 2345555667777766431 11 2233445556778888888899998651 222222233333322 2246
Q ss_pred CcEEEEecCChhHHhhhC
Q 048084 313 GSKILITTRKEAIARIMG 330 (967)
Q Consensus 313 gs~iliTtr~~~v~~~~~ 330 (967)
|+-.++.|.++.++..+.
T Consensus 197 G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 197 GTTLVLVTHDPQLAARCD 214 (228)
T ss_pred CceEEEEeCCHHHHHhhh
Confidence 777888888888887654
No 421
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.23 Score=49.12 Aligned_cols=52 Identities=23% Similarity=0.188 Sum_probs=37.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
-+++=|=.+.++++.+...-+--. .-+.++-|.++|++|.|||-+|+.|++.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 345667788888888776432100 1235678999999999999999999995
No 422
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.58 E-value=0.12 Score=59.19 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=72.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
.+++|....++++.+.+..-.. ....|.|.|..|+||+.+|+.+++.... .-...+-|++.... ...+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~S~r--~~~pfv~inC~~l~--e~lle--- 280 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQLSGR--RDFPFVAINCGAIA--ESLLE--- 280 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHhcCc--CCCCEEEeccccCC--hhHHH---
Confidence 3589999999998888854332 3457999999999999999999874211 11123444544332 22222
Q ss_pred HHhccCCCC-CCChH--HHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecCC
Q 048084 257 EALTDSASN-FGEFQ--SLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTRK 322 (967)
Q Consensus 257 ~~l~~~~~~-~~~~~--~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr~ 322 (967)
..+.+...+ ..... .....+. ....=-|+||++.+........+...+.... ...+||.||..
T Consensus 281 seLFG~~~gaftga~~~~~~Gl~e---~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 281 AELFGYEEGAFTGARRGGRTGLIE---AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred HHhcCCcccccccccccccccchh---hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 222221110 00000 0000011 1123358999998776555566776665421 12378877754
No 423
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.56 E-value=0.2 Score=57.52 Aligned_cols=135 Identities=12% Similarity=0.128 Sum_probs=73.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
..++|....+.++.+.+..... ....+.|.|..|+||+++|+.+..... ......+-+++... ..+.+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~--~~~~~~~~l 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR----SDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI--PKDLIESEL 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC----cCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC--CHHHHHHHh
Confidence 3578888877777777754322 335678999999999999999887521 11222334444432 223333322
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecCCh
Q 048084 257 EALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTRKE 323 (967)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr~~ 323 (967)
++........... ......-....-.|+||+++.........+...+..+. ...+||+||...
T Consensus 206 --fg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 --FGHEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred --cCCCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 2211100000000 00000011223458999998876666666777665432 245788887653
No 424
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.56 E-value=0.31 Score=50.21 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|..|+|||||++.+...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 425
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.54 E-value=0.065 Score=55.97 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=39.6
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHH
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIE 257 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 257 (967)
+..+++.|+|.+|+|||++|.++... .......++||+..+ +..++.+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e--~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEE--SPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecC--CHHHHHHHHHH
Confidence 35689999999999999999777764 444577899998876 45555555543
No 426
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.53 E-value=0.22 Score=49.52 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.1
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|+|.+|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998874
No 427
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.52 E-value=0.088 Score=57.09 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=48.9
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccC---CceEEEEec-C
Q 048084 177 SEIFGREDEKNDLVNRLICE--------GSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF---DERIWVCVS-D 244 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~-~ 244 (967)
..++|.++..+.+.-.+... .-...-.++.|.++|++|+|||++|+.+... ....| +...|+..+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 45889988888887766532 0001113467899999999999999999885 22222 222222211 1
Q ss_pred CCCHHHHHHHHHHHh
Q 048084 245 PFDEFRIAKAIIEAL 259 (967)
Q Consensus 245 ~~~~~~~~~~i~~~l 259 (967)
..+.+++++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665443
No 428
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.52 E-value=0.42 Score=48.87 Aligned_cols=126 Identities=13% Similarity=0.187 Sum_probs=80.0
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
..+.|+|-... .++..++.... .....+.++|..|+|||+-++.+++. ....+.+..+..++...+...
T Consensus 70 ~~~~~l~tkt~-r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~ 138 (297)
T COG2842 70 LAPDFLETKTV-RRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILI 138 (297)
T ss_pred ccccccccchh-HhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHH
Confidence 44556665432 23333332221 23348999999999999999999884 223444556666666666666
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCC
Q 048084 255 IIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHG 313 (967)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~g 313 (967)
++........ ....+....+...+++..-++++|+.+......++.++......+-+
T Consensus 139 i~~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 139 ICAAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred HHHHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 6655543322 23444555555666788889999999888778888888766654433
No 429
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.52 E-value=0.12 Score=59.26 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+++|....++++.+.+..-.. ....|.|.|..|+||+.+|+.+.+.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4589999999999888754332 3457999999999999999999874
No 430
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.50 E-value=0.025 Score=58.90 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 187 NDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 187 ~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++.+.. ..+-|.++|+.|+|||++++...+.
T Consensus 23 ~~ll~~l~~-------~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLS-------NGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHH-------CTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHH-------cCCcEEEECCCCCchhHHHHhhhcc
Confidence 455555553 2367899999999999999888864
No 431
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.47 E-value=0.49 Score=47.69 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|..|.|||||++.+...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 432
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.47 E-value=0.52 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|.|+.|+|||||.+.++.-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999984
No 433
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.46 Score=48.83 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|.|+.|+|||||++.++..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999875
No 434
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.45 E-value=0.35 Score=48.18 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999988875
No 435
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.44 E-value=0.12 Score=56.24 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=47.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCC-----CCChHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASN-----FGEFQSLMQRIQ 277 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 277 (967)
...++.|.|.+|+|||||+.+++.. ....-..++|++..+ +...+.. -++.++..... ..+.+++.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4579999999999999999888764 222234678887654 2333222 23334322111 123334333332
Q ss_pred HHhccCcceEeecCCC
Q 048084 278 KHVARKKLLLVLDDVW 293 (967)
Q Consensus 278 ~~l~~~r~LlvlDdv~ 293 (967)
..+.-++|+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2345677888773
No 436
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.44 E-value=0.032 Score=56.34 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|.|.|++|+||||+|+.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998874
No 437
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.43 E-value=0.22 Score=49.32 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
++++|+|+.|.|||||++.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988875
No 438
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.42 E-value=0.098 Score=56.87 Aligned_cols=112 Identities=14% Similarity=0.145 Sum_probs=59.9
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.|.|+.|+||||+++.+.+. +.......++. +.++. +-.... ...+-...............++..++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~--E~~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPI--EYVHRN-KRSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCCh--hhhccC-ccceEEccccCCCCcCHHHHHHHhhccC
Confidence 368999999999999999888774 33333344443 22211 111000 0000000000111223456677778888
Q ss_pred cceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHH
Q 048084 284 KLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIA 326 (967)
Q Consensus 284 r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~ 326 (967)
+=.+++|++.+. +.+..... ....|..|+.|.......
T Consensus 196 pd~i~vgEird~--~~~~~~l~---aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVELALT---AAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCCH--HHHHHHHH---HHHcCCcEEEEEcCCCHH
Confidence 899999999654 33433222 223455566666654433
No 439
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.42 E-value=0.39 Score=49.72 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999975
No 440
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.41 E-value=0.17 Score=55.78 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=48.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC-CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP-FDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
...+++++|+.|+||||++..+............+..+..... ....+-+....+.++.......+..+....+.. +.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 4579999999999999999877653111222233445544332 223333444555555443333334444333332 33
Q ss_pred cCcceEeecCCCC
Q 048084 282 RKKLLLVLDDVWN 294 (967)
Q Consensus 282 ~~r~LlvlDdv~~ 294 (967)
+ .-++++|-...
T Consensus 269 ~-~d~VLIDTaGr 280 (420)
T PRK14721 269 G-KHMVLIDTVGM 280 (420)
T ss_pred C-CCEEEecCCCC
Confidence 3 45677787643
No 441
>PRK03839 putative kinase; Provisional
Probab=94.40 E-value=0.03 Score=54.82 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999985
No 442
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.39 E-value=0.055 Score=57.02 Aligned_cols=85 Identities=21% Similarity=0.153 Sum_probs=51.1
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHH
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSAS-----NFGEFQSLMQRI 276 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 276 (967)
+..+++-|+|+.|+||||||-.+... ....-..++||+....++.. .++.++.+.. .....++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 35689999999999999999777764 33334567899987766553 3444443211 123445566666
Q ss_pred HHHhccC-cceEeecCCC
Q 048084 277 QKHVARK-KLLLVLDDVW 293 (967)
Q Consensus 277 ~~~l~~~-r~LlvlDdv~ 293 (967)
...++.. --++|+|-|.
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 6666433 4588889873
No 443
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.34 E-value=0.39 Score=48.84 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|.|..|+|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998874
No 444
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.34 E-value=0.15 Score=52.13 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=32.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
....+.|.|.+|+|||++|.++.... ...-..++|++... +...+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~--~~~~i~~ 65 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEE--SRESIIR 65 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccC--CHHHHHH
Confidence 45799999999999999998765431 12234678887654 3444443
No 445
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.33 E-value=0.24 Score=58.45 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=51.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC-CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF-DEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
.++++++|+.|+||||.+.+++...........+..++..... ...+-++...+.++.......+..++...+.+ +.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 5799999999999999998887652212212345566554321 23445555556665443333445555555543 333
Q ss_pred CcceEeecCCC
Q 048084 283 KKLLLVLDDVW 293 (967)
Q Consensus 283 ~r~LlvlDdv~ 293 (967)
+ =++++|=..
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 477788765
No 446
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.33 E-value=0.73 Score=47.36 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998864
No 447
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.32 E-value=0.11 Score=51.77 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=51.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC-CCHHHHHHHHHHHhcc-------CCCCCCChHH---
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP-FDEFRIAKAIIEALTD-------SASNFGEFQS--- 271 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~--- 271 (967)
....++|.|.+|+|||+|+..+.+.. .-+.++++.+++. ..+.++.+++...-.. ...+.....+
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 34678999999999999999998752 2344578887754 4455555555332111 0111111111
Q ss_pred --HHHHHHHHh--ccCcceEeecCC
Q 048084 272 --LMQRIQKHV--ARKKLLLVLDDV 292 (967)
Q Consensus 272 --~~~~l~~~l--~~~r~LlvlDdv 292 (967)
..-.+.+++ +++..|+++||+
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hccchhhhHHHhhcCCceeehhhhh
Confidence 111122333 588999999998
No 448
>PRK04040 adenylate kinase; Provisional
Probab=94.31 E-value=0.035 Score=54.38 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|+|+|++|+||||+++.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999998875
No 449
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.7 Score=50.12 Aligned_cols=151 Identities=15% Similarity=0.051 Sum_probs=77.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKK 284 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r 284 (967)
|-=.++|+||.|||+++.+.++.. .|+.. =+..+...+-.+ ++.++... ..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~ydIy-dLeLt~v~~n~d-Lr~LL~~t----------------------~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYDIY-DLELTEVKLDSD-LRHLLLAT----------------------PNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCceE-EeeeccccCcHH-HHHHHHhC----------------------CCC
Confidence 556789999999999999999862 24322 122222222222 23222221 235
Q ss_pred ceEeecCCCCC------------------ChhhHHHHHhhhcCC--CC-CcEEE-EecCChhHHh-h----hCCcceeec
Q 048084 285 LLLVLDDVWNE------------------NFYKWEQFNNCLKNC--LH-GSKIL-ITTRKEAIAR-I----MGSIDIISI 337 (967)
Q Consensus 285 ~LlvlDdv~~~------------------~~~~~~~l~~~l~~~--~~-gs~il-iTtr~~~v~~-~----~~~~~~~~l 337 (967)
-+||+.|++.. ....+-.+..++..- .. +-||| .||...+-.+ + -...-.+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 55555555321 001122233333221 12 23555 5776643221 1 122447888
Q ss_pred CCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 338 NVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 338 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
.-=+.+.-..|+..+..... + ..+..+|.+...|.-+.=+.++..|
T Consensus 368 gyCtf~~fK~La~nYL~~~~---~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE---D----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC---C----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 88899999999988864322 1 2235555555555544444555444
No 450
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.28 E-value=0.48 Score=48.71 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|..|+|||||++.+...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 3469999999999999999999875
No 451
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.27 E-value=0.017 Score=33.74 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=12.9
Q ss_pred CCCEEecCCCCCCcccCccccc
Q 048084 648 NLERLNVSGCRNLRELPQGIGK 669 (967)
Q Consensus 648 ~L~~L~L~~~~~l~~lp~~l~~ 669 (967)
+|++|+|++|. ++.+|.+|++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46677777775 5566665543
No 452
>PRK04328 hypothetical protein; Provisional
Probab=94.27 E-value=0.13 Score=53.06 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=33.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
...++.|.|.+|+|||+||.++.... ...-..++|++..+ +...+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee--~~~~i~~ 68 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEE--HPVQVRR 68 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeC--CHHHHHH
Confidence 46799999999999999997765531 12235678888766 4444444
No 453
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.25 E-value=0.037 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+.++|+|.|++|+||||+|+.+.+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998864
No 454
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.24 E-value=0.071 Score=51.99 Aligned_cols=42 Identities=36% Similarity=0.446 Sum_probs=31.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHc
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
++++|.+.....+.-... +..-+.++|++|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHH
Confidence 467898887777776664 235799999999999999998876
No 455
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.23 E-value=0.11 Score=54.01 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=18.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+.|.|.|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999988875
No 456
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.53 Score=49.68 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=33.1
Q ss_pred ccccchhhHHHHHHHHhcCCC------CCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 178 EIFGREDEKNDLVNRLICEGS------KEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
++.|-++..+-|.+.+.-+-- .-...=+-|.++|++|.|||-||+.|+.+
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 456666666666665432210 00112367899999999999999999986
No 457
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.21 E-value=0.13 Score=46.96 Aligned_cols=104 Identities=11% Similarity=0.205 Sum_probs=54.9
Q ss_pred ccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-cccccCCCCcEEEccCCCCccc
Q 048084 560 DNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEKLLHLKYLNLFCQREIEK 638 (967)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~l~~L~~L~Ls~~~~i~~ 638 (967)
..|.++++|+.+.+..+ ...+....|.++..|+.+.+. + .+..++ ..+.++..|+.+.+.. . +..
T Consensus 6 ~~F~~~~~l~~i~~~~~----~~~I~~~~F~~~~~l~~i~~~-----~---~~~~i~~~~F~~~~~l~~i~~~~-~-~~~ 71 (129)
T PF13306_consen 6 NAFYNCSNLESITFPNT----IKKIGENAFSNCTSLKSINFP-----N---NLTSIGDNAFSNCKSLESITFPN-N-LKS 71 (129)
T ss_dssp TTTTT-TT--EEEETST------EE-TTTTTT-TT-SEEEES-----S---TTSCE-TTTTTT-TT-EEEEETS-T-T-E
T ss_pred HHHhCCCCCCEEEECCC----eeEeChhhccccccccccccc-----c---cccccceeeeecccccccccccc-c-ccc
Confidence 45777888888887643 334456668888888888886 3 355554 3456676788888865 3 555
Q ss_pred cch-HHhccCCCCEEecCCCCCCcccCc-cccccccccEEecCC
Q 048084 639 LPE-TLCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDR 680 (967)
Q Consensus 639 lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~ 680 (967)
++. .+..+++|+.+++..+ +..++. .+.++ +|+.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 554 3556888888888653 444443 35555 777777654
No 458
>PHA00729 NTP-binding motif containing protein
Probab=94.19 E-value=0.059 Score=53.50 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999888874
No 459
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.19 E-value=0.2 Score=58.28 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=58.2
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccC--CceEEEEecCCCCHHHHHHHHHHHhccCCCC---CCChHHHHHHHHH
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYF--DERIWVCVSDPFDEFRIAKAIIEALTDSASN---FGEFQSLMQRIQK 278 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 278 (967)
.++..|.|.+|.||||++..+.........- ...+-+.+.+......+.+.+......-... ..........+++
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHr 239 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHR 239 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhh
Confidence 3689999999999999998776531111111 1244454444333334433333322110000 0000000122222
Q ss_pred Hhcc-----------Cc----ceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 279 HVAR-----------KK----LLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 279 ~l~~-----------~r----~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
.|.- .+ =+||+|++...+...+..+...++ .++++|+.=-.
T Consensus 240 lLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~---~~~rlIlvGD~ 295 (586)
T TIGR01447 240 LLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKALP---PNTKLILLGDK 295 (586)
T ss_pred hhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhcC---CCCEEEEECCh
Confidence 2211 11 289999997766555666666555 46787776543
No 460
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.17 E-value=1 Score=45.03 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|.|+.|.|||||++.+...
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4468999999999999999999875
No 461
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.17 E-value=0.041 Score=53.92 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+.+|+|.|.+|+||||+|+.++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999985
No 462
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.16 E-value=0.078 Score=61.81 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=55.8
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
.-..++|.++.++.|...+... +.+.++|++|+||||+|+.+.+.. ....++.++|..- ...+...+++.
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~ 98 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRT 98 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHH
Confidence 4456899999998888877521 368899999999999999988752 2334577788765 33467777777
Q ss_pred HHHHhc
Q 048084 255 IIEALT 260 (967)
Q Consensus 255 i~~~l~ 260 (967)
++.+++
T Consensus 99 v~~~~G 104 (637)
T PRK13765 99 VPAGKG 104 (637)
T ss_pred HHHhcC
Confidence 776554
No 463
>PRK15453 phosphoribulokinase; Provisional
Probab=94.16 E-value=0.25 Score=50.78 Aligned_cols=77 Identities=19% Similarity=0.086 Sum_probs=42.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC--CHHHHHHHHHH--Hhc--cCC--CCCCChHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF--DEFRIAKAIIE--ALT--DSA--SNFGEFQSLMQ 274 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~--~l~--~~~--~~~~~~~~~~~ 274 (967)
+..+|+|.|.+|+||||+|+.+.+. .+..-..+..++..... +..+.-..+.. .-+ -+. ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 5679999999999999999988763 21111124445444322 22222222211 111 112 45566777777
Q ss_pred HHHHHhc
Q 048084 275 RIQKHVA 281 (967)
Q Consensus 275 ~l~~~l~ 281 (967)
.++....
T Consensus 82 ~l~~l~~ 88 (290)
T PRK15453 82 LFREYGE 88 (290)
T ss_pred HHHHHhc
Confidence 7776654
No 464
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.15 E-value=0.02 Score=50.70 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=18.5
Q ss_pred EEEEccCCCcHHHHHHHHHcCccccccCC
Q 048084 207 ISLVGMGGIGKTTLAQFAYNNGDVKKYFD 235 (967)
Q Consensus 207 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~ 235 (967)
|.|.|.+|+|||++|+.++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 679999999999999999985 555564
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.15 E-value=0.27 Score=56.27 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=35.5
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
....++.|.|++|+|||||+.++.... ...-..++|++..+ +..++...+
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~~ 310 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRNA 310 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHHH
Confidence 356899999999999999997777642 22334678887665 455555554
No 466
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.15 E-value=0.83 Score=43.00 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=27.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEE
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVC 241 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 241 (967)
...+++|.|++|.|||||...++.- ...-.+.+|+.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF---~~P~~G~i~i~ 59 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGF---ETPASGEILIN 59 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhc---cCCCCceEEEc
Confidence 4468999999999999999988873 22224566775
No 467
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.14 E-value=0.18 Score=55.51 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=49.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccC-------CCCCCChHH----
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDS-------ASNFGEFQS---- 271 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 271 (967)
....++|+|..|+|||||++.+..... ....++.........+.++..+.+..-... ..+.....+
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 446899999999999999998887522 222333332233344555555444332211 111111121
Q ss_pred -HHHHHHHHh--ccCcceEeecCC
Q 048084 272 -LMQRIQKHV--ARKKLLLVLDDV 292 (967)
Q Consensus 272 -~~~~l~~~l--~~~r~LlvlDdv 292 (967)
..-.+.+++ +++..|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 222344555 578999999998
No 468
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.12 E-value=0.077 Score=49.71 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=30.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 184 DEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+.+++|.+.+. .++++++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~---------~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK---------GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT---------TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc---------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 56788888883 279999999999999999999886
No 469
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.12 E-value=0.22 Score=49.26 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=30.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccccc--------CCceEEEEecCCCCHHHHHHHH
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKY--------FDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~--------f~~~~wv~~~~~~~~~~~~~~i 255 (967)
.++.|.|++|+|||+++..+......... -..++|++.... ...+.+.+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl 89 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRL 89 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHH
Confidence 58999999999999999777665332222 236788877654 33444433
No 470
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.11 E-value=0.12 Score=56.14 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=50.2
Q ss_pred CCccccchhhHHHHHHHHhcC--------CCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccC---CceEEEEe-c
Q 048084 176 ESEIFGREDEKNDLVNRLICE--------GSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF---DERIWVCV-S 243 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~-~ 243 (967)
+..++|.++..+.+..++... .....-..+.+.++|++|+|||++|+.+... ....| +...|... -
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCc
Confidence 456899999999998887531 0000112467899999999999999998885 22222 22212221 1
Q ss_pred CCCCHHHHHHHHHHHh
Q 048084 244 DPFDEFRIAKAIIEAL 259 (967)
Q Consensus 244 ~~~~~~~~~~~i~~~l 259 (967)
...+.+.+.+.+....
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 1235566666665554
No 471
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.77 Score=52.91 Aligned_cols=146 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred EEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcce
Q 048084 207 ISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLL 286 (967)
Q Consensus 207 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~L 286 (967)
|.++|++|.|||-+|++|+.+-. .-|++|..+ +++...+ ..+.+-+.+.+.+.=..++++
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----ELLNMYV---------GqSE~NVR~VFerAR~A~PCV 767 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----ELLNMYV---------GQSEENVREVFERARSAAPCV 767 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----HHHHHHh---------cchHHHHHHHHHHhhccCCeE
Q ss_pred EeecCCCCCCh-----------------hhHHHHHhhhcCCCCCcEEEEecCChhHHhhh-----CCcceeecCCCChhh
Q 048084 287 LVLDDVWNENF-----------------YKWEQFNNCLKNCLHGSKILITTRKEAIARIM-----GSIDIISINVLSEIE 344 (967)
Q Consensus 287 lvlDdv~~~~~-----------------~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~-----~~~~~~~l~~l~~~~ 344 (967)
|+||+++.... +-+.++-..=.....+--||=+|..+.+.+.. .....+.+++=+.++
T Consensus 768 IFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~e 847 (953)
T KOG0736|consen 768 IFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAE 847 (953)
T ss_pred EEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHH
Q ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHc
Q 048084 345 CWSVFELLAFSGKSMEERENLEKIGREIVGKC 376 (967)
Q Consensus 345 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 376 (967)
+..=..+..-..-..+.+-+ ..+|+++|
T Consensus 848 sk~~vL~AlTrkFkLdedVd----L~eiAk~c 875 (953)
T KOG0736|consen 848 SKLRVLEALTRKFKLDEDVD----LVEIAKKC 875 (953)
T ss_pred HHHHHHHHHHHHccCCCCcC----HHHHHhhC
No 472
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.10 E-value=0.094 Score=49.99 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+.|.+.|.+|+||||+|+++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46789999999999999998875
No 473
>PRK00625 shikimate kinase; Provisional
Probab=94.09 E-value=0.036 Score=53.30 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999875
No 474
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.06 E-value=0.27 Score=55.13 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=48.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC-CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP-FDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
..+|++++|+.|+||||++.+++.....+..-..+..|..... ....+-++...+..+.......+..+....+ ..+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 3479999999999999999888864222221224556655432 2233334444455443322222222222222 2233
Q ss_pred cCcceEeecCCCC
Q 048084 282 RKKLLLVLDDVWN 294 (967)
Q Consensus 282 ~~r~LlvlDdv~~ 294 (967)
+ +..+++|-...
T Consensus 334 d-~d~VLIDTaGr 345 (484)
T PRK06995 334 N-KHIVLIDTIGM 345 (484)
T ss_pred C-CCeEEeCCCCc
Confidence 3 35778888753
No 475
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.05 E-value=0.69 Score=49.55 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 048084 207 ISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 207 v~i~G~~GiGKTtLa~~v~~~ 227 (967)
+++.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999888865
No 476
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.05 E-value=0.071 Score=54.39 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=32.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
...++.|.|.+|+|||++|.++.... .+..=..++||+..+ +..++.+.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee--~~~~l~~~~ 67 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEE--PPEELIENM 67 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS---HHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecC--CHHHHHHHH
Confidence 55799999999999999997655431 122134678888765 345555544
No 477
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.03 E-value=0.19 Score=52.29 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=44.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...+.|.|..|+||||+++.+... +...-..++.+.-........ ..++....... ......++..++..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~-----~~q~~v~~~~~---~~~~~~l~~~lR~~ 149 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPG-----INQVQVNEKAG---LTFARGLRAILRQD 149 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCC-----ceEEEeCCcCC---cCHHHHHHHHhccC
Confidence 358999999999999999887664 211111233332111111100 01111111111 13455666777777
Q ss_pred cceEeecCCCCC
Q 048084 284 KLLLVLDDVWNE 295 (967)
Q Consensus 284 r~LlvlDdv~~~ 295 (967)
+=.++++++.+.
T Consensus 150 PD~i~vgEiR~~ 161 (264)
T cd01129 150 PDIIMVGEIRDA 161 (264)
T ss_pred CCEEEeccCCCH
Confidence 889999999765
No 478
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.01 E-value=0.41 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
....++|+|..|+|||||++.+.-
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 346899999999999999998876
No 479
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.99 E-value=0.1 Score=46.15 Aligned_cols=47 Identities=21% Similarity=0.426 Sum_probs=32.9
Q ss_pred ccccchhhH----HHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 178 EIFGREDEK----NDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 178 ~~vGR~~~~----~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++|..-.. +.|.+.+... .+.++-|+..+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 355655444 4444444332 3467889999999999999999887775
No 480
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.97 E-value=0.61 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|..|+|||||++.++..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3468999999999999999999885
No 481
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.94 E-value=0.26 Score=51.08 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHHcC
Q 048084 207 ISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 207 v~i~G~~GiGKTtLa~~v~~~ 227 (967)
|.++|.+|+||||+|+.+.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999998875
No 482
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.93 E-value=0.22 Score=56.10 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=30.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSD 244 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 244 (967)
...++.|.|.+|+|||||+.+++.... ..-..++|++..+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ee 118 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEE 118 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccc
Confidence 457999999999999999988876522 2224578887654
No 483
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.92 E-value=0.11 Score=56.39 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=46.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
.++|+++....+...+... +.+.+.|++|+|||+||+.++.. ... ...+|.+.......++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~~---~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LGL---PFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hCC---CeEEEecCCCCCHHHhcC
Confidence 3889988888888887643 45899999999999999999985 332 235666666656555543
No 484
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.91 E-value=0.34 Score=49.62 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999999875
No 485
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.91 E-value=0.54 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....++|+|+.|+|||||++.+...
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999874
No 486
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.89 E-value=0.35 Score=48.78 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|.|+|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998864
No 487
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.89 E-value=0.8 Score=47.69 Aligned_cols=131 Identities=15% Similarity=0.060 Sum_probs=73.5
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcc------------ccccCCceEEEEecCCCCHHHHH
Q 048084 185 EKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGD------------VKKYFDERIWVCVSDPFDEFRIA 252 (967)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~------------~~~~f~~~~wv~~~~~~~~~~~~ 252 (967)
.-+++...+.. +.-.....++|+.|+||+++|..++...- ...|.|..+.......
T Consensus 5 ~~~~L~~~i~~-----~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~------- 72 (290)
T PRK05917 5 AWEALIQRVRD-----QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG------- 72 (290)
T ss_pred HHHHHHHHHHc-----CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-------
Confidence 34556666642 22457788999999999999977665311 0112221111111000
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-hhHH
Q 048084 253 KAIIEALTDSASNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-EAIA 326 (967)
Q Consensus 253 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-~~v~ 326 (967)
.....++.. .+.+.+ .+++-++|+|+++....+.+..+...+.....++.+|++|.+ ..+.
T Consensus 73 ------------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll 139 (290)
T PRK05917 73 ------------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLP 139 (290)
T ss_pred ------------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCc
Confidence 001233322 223322 245568999999888878888888888776667766666655 3333
Q ss_pred hh-hCCcceeecCCC
Q 048084 327 RI-MGSIDIISINVL 340 (967)
Q Consensus 327 ~~-~~~~~~~~l~~l 340 (967)
.. ......+.+.++
T Consensus 140 ~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 140 PTIRSRSLSIHIPME 154 (290)
T ss_pred HHHHhcceEEEccch
Confidence 22 223456666655
No 488
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.88 E-value=0.14 Score=60.42 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=55.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSAS-----NFGEFQSLMQRIQ 277 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (967)
..+++-|+|++|+||||||.+++.. ....=..++|++..+.++. ..++.++.+.. .....++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 5689999999999999999776553 2222345789987776663 25566654321 1234455556666
Q ss_pred HHhc-cCcceEeecCCC
Q 048084 278 KHVA-RKKLLLVLDDVW 293 (967)
Q Consensus 278 ~~l~-~~r~LlvlDdv~ 293 (967)
..++ ++.-++|+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 6554 456689999984
No 489
>PF13245 AAA_19: Part of AAA domain
Probab=93.85 E-value=0.084 Score=42.66 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=16.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHH
Q 048084 204 PRIISLVGMGGIGKTTLAQFAY 225 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~ 225 (967)
.+++.|.|++|.|||+++....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3678889999999996653333
No 490
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.83 E-value=0.21 Score=51.74 Aligned_cols=87 Identities=21% Similarity=0.155 Sum_probs=47.8
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCC----C---CCCChHHHHH
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSA----S---NFGEFQSLMQ 274 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~---~~~~~~~~~~ 274 (967)
.+..++.|.|.+|+|||||+..+.+. ..... .++.+. ....+..+ .+.++..+.+. . -..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~-~~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSV-PCAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCC-CEEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 46799999999999999999988875 22322 233332 22222221 22233332210 0 0123334555
Q ss_pred HHHHHhccCcceEeecCCCC
Q 048084 275 RIQKHVARKKLLLVLDDVWN 294 (967)
Q Consensus 275 ~l~~~l~~~r~LlvlDdv~~ 294 (967)
.+........=++|++++..
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55554444456888999864
No 491
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.82 E-value=0.26 Score=50.55 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=55.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccc--cccCCceEEEEecCC-CCHHHHHHHHHHHhccC-------CCCCCChH--
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDV--KKYFDERIWVCVSDP-FDEFRIAKAIIEALTDS-------ASNFGEFQ-- 270 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~-- 270 (967)
..+.++|.|-.|+|||+|+..+.+.... +..-+.++++-+.+. ..+.++..++...-... ..+.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4567899999999999999888876321 122467788888764 34566666665432111 11111111
Q ss_pred ---HHHHHHHHHh--c-cCcceEeecCC
Q 048084 271 ---SLMQRIQKHV--A-RKKLLLVLDDV 292 (967)
Q Consensus 271 ---~~~~~l~~~l--~-~~r~LlvlDdv 292 (967)
-..-.+.+++ + +++.|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1223344554 2 67999999998
No 492
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.82 E-value=0.058 Score=49.58 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++++|+|.+|+||||+.+.+.+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 589999999999999999887774
No 493
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.77 E-value=0.83 Score=47.12 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|.|..|.|||||.+.++..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 494
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=3.4 Score=47.49 Aligned_cols=178 Identities=21% Similarity=0.197 Sum_probs=92.5
Q ss_pred ccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHH
Q 048084 178 EIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFR 250 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (967)
++-|..+..+.+.+.+..+... .-....-|.++|++|+|||-||..++.... .-+|++..+ +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP----E 736 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP----E 736 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----H
Confidence 3455666666666665443321 112345689999999999999999887522 235666543 2
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC-----------hhhHHHHHhhhcCC--CCCcEEE
Q 048084 251 IAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN-----------FYKWEQFNNCLKNC--LHGSKIL 317 (967)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~il 317 (967)
++.+.+ + .+.+.....+.+.-..++++++||.++... .....++...+... -.|.-|+
T Consensus 737 lL~KyI---G------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 737 LLSKYI---G------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHHHh---c------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEE
Confidence 322221 1 122233333444445789999999986421 11233444444422 2455455
Q ss_pred E-ecCChhHHhhh---CC-cceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 318 I-TTRKEAIARIM---GS-IDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 318 i-Ttr~~~v~~~~---~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
- |||..-+...+ +. ...+.=+.-++.+-.++|+..+..... ....+ .+.++.+.+|.-
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vd----l~~~a~~T~g~t 870 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVD----LECLAQKTDGFT 870 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccc----hHHHhhhcCCCc
Confidence 3 66654322221 22 223333444667777888766532211 12222 345556665554
No 495
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.74 E-value=0.05 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...|.|+|++|+||||+|+.+++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999885
No 496
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.73 E-value=0.33 Score=49.37 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=33.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
...++.|.|.+|+|||++|.+++... . ..=..++|++... +...+.+.+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~-~-~~g~~~~y~s~e~--~~~~l~~~~ 63 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQG-L-KNGEKAMYISLEE--REERILGYA 63 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H-hCCCeEEEEECCC--CHHHHHHHH
Confidence 46799999999999999997776531 1 2234578887765 344444443
No 497
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.72 E-value=0.4 Score=48.20 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=20.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
..+++.|.|+.|.||||+.+.+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999988876
No 498
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=93.69 E-value=0.4 Score=58.36 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....++|+|..|+|||||++.+...
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999988764
No 499
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.69 E-value=0.48 Score=47.20 Aligned_cols=52 Identities=12% Similarity=0.198 Sum_probs=31.4
Q ss_pred HHHHhccCcceEeecCCCCC-ChhhHH-HHHhhhcCCC-C-CcEEEEecCChhHHh
Q 048084 276 IQKHVARKKLLLVLDDVWNE-NFYKWE-QFNNCLKNCL-H-GSKILITTRKEAIAR 327 (967)
Q Consensus 276 l~~~l~~~r~LlvlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~iliTtr~~~v~~ 327 (967)
+.+.+..++-++++|+.-.. +..... .+...+.... . |.-||++|.+.....
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 44556677889999998543 223334 4555544322 1 556888888776554
No 500
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.69 E-value=0.2 Score=49.14 Aligned_cols=41 Identities=27% Similarity=0.291 Sum_probs=27.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
.|+|+|-||+||||+|....... ...+-..++=|++..+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~~VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGYNVLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCceEEEEeCCCCCC
Confidence 58999999999999997744431 122213466677766555
Done!