Query 048084
Match_columns 967
No_of_seqs 594 out of 4191
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 10:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.1E-45 1E-49 425.1 22.7 316 180-521 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.1E-36 7.1E-41 351.0 22.8 285 178-512 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-35 7.4E-40 382.7 24.0 315 171-519 118-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 9.7E-33 3.3E-37 326.2 27.1 308 174-517 121-450 (591)
5 3rgz_A Protein brassinosteroid 99.9 4.9E-28 1.7E-32 294.2 15.6 386 539-965 269-766 (768)
6 4eco_A Uncharacterized protein 99.9 5.6E-27 1.9E-31 278.0 17.7 345 539-943 206-600 (636)
7 4ecn_A Leucine-rich repeat pro 99.9 1.9E-26 6.7E-31 277.0 19.4 349 537-943 446-840 (876)
8 3rgz_A Protein brassinosteroid 99.9 1.2E-25 4.1E-30 273.2 17.7 317 539-886 200-548 (768)
9 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-25 5.6E-30 266.1 18.3 129 539-682 32-164 (606)
10 2z7x_B TOLL-like receptor 1, v 99.9 4E-25 1.4E-29 257.5 20.2 136 539-693 21-162 (520)
11 4ecn_A Leucine-rich repeat pro 99.9 9.7E-26 3.3E-30 271.0 15.1 296 615-942 481-818 (876)
12 3t6q_A CD180 antigen; protein- 99.9 2.9E-25 1E-29 264.0 18.5 353 539-942 33-461 (606)
13 4fmz_A Internalin; leucine ric 99.9 4.5E-25 1.5E-29 242.6 17.0 302 539-942 44-345 (347)
14 4eco_A Uncharacterized protein 99.9 4E-26 1.4E-30 270.7 9.1 320 585-942 198-578 (636)
15 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-24 3.7E-29 255.9 21.3 377 539-942 26-509 (549)
16 2z63_A TOLL-like receptor 4, v 99.9 2.4E-25 8.1E-30 263.0 15.3 144 539-697 28-175 (570)
17 3v47_A TOLL-like receptor 5B a 99.9 1.5E-24 5.1E-29 248.2 19.3 363 539-942 30-407 (455)
18 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-24 3.6E-29 262.9 18.9 156 539-709 25-185 (680)
19 1o6v_A Internalin A; bacterial 99.9 2.4E-24 8.2E-29 246.5 20.5 321 540-942 47-387 (466)
20 3j0a_A TOLL-like receptor 5; m 99.9 6.8E-24 2.3E-28 260.6 25.7 275 539-850 24-372 (844)
21 3o6n_A APL1; leucine-rich repe 99.9 2.5E-24 8.6E-29 240.5 19.3 305 564-943 43-352 (390)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.9E-24 1.3E-28 251.1 21.8 342 539-942 52-509 (562)
23 3t6q_A CD180 antigen; protein- 99.9 1.5E-24 5E-29 257.9 17.8 140 786-942 371-512 (606)
24 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-24 9E-29 255.8 19.1 362 543-942 15-436 (606)
25 3oja_B Anopheles plasmodium-re 99.9 6.2E-24 2.1E-28 250.6 19.0 306 564-943 49-358 (597)
26 2id5_A Lingo-1, leucine rich r 99.9 1.7E-23 6E-28 240.6 21.0 263 544-849 16-281 (477)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.9E-24 2.4E-28 249.0 17.3 355 541-942 33-485 (562)
28 4fmz_A Internalin; leucine ric 99.9 1.2E-23 4.2E-28 231.1 16.1 280 538-917 65-344 (347)
29 3bz5_A Internalin-J, INLJ; leu 99.9 3.4E-23 1.2E-27 234.4 19.2 304 539-922 42-354 (457)
30 2z7x_B TOLL-like receptor 1, v 99.9 4.2E-23 1.4E-27 240.4 19.5 143 542-707 3-150 (520)
31 2z63_A TOLL-like receptor 4, v 99.9 2E-23 6.9E-28 246.4 15.9 146 546-709 14-163 (570)
32 1o6v_A Internalin A; bacterial 99.9 1.1E-22 3.7E-27 232.7 20.7 319 563-942 43-365 (466)
33 3v47_A TOLL-like receptor 5B a 99.9 9.6E-23 3.3E-27 233.2 20.0 348 544-942 15-383 (455)
34 3j0a_A TOLL-like receptor 5; m 99.9 1E-22 3.5E-27 250.1 20.0 332 543-916 8-372 (844)
35 2id5_A Lingo-1, leucine rich r 99.9 1.4E-22 4.7E-27 233.2 18.2 296 539-887 32-331 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 5.1E-23 1.8E-27 229.9 13.7 303 539-917 45-350 (390)
37 2z81_A CD282 antigen, TOLL-lik 99.9 9.5E-23 3.2E-27 239.3 15.5 195 545-764 11-210 (549)
38 1ziw_A TOLL-like receptor 3; i 99.9 4.5E-22 1.5E-26 239.9 19.9 269 544-851 9-283 (680)
39 3oja_B Anopheles plasmodium-re 99.9 8.7E-23 3E-27 240.8 13.0 305 539-918 51-357 (597)
40 4g8a_A TOLL-like receptor 4; l 99.9 7.6E-22 2.6E-26 236.5 20.5 369 539-943 52-580 (635)
41 3bz5_A Internalin-J, INLJ; leu 99.9 8.3E-22 2.8E-26 223.1 19.2 304 560-942 36-351 (457)
42 4fcg_A Uncharacterized protein 99.9 4.3E-22 1.5E-26 215.6 15.7 232 591-940 79-311 (328)
43 1ogq_A PGIP-2, polygalacturona 99.9 1E-21 3.4E-26 211.4 11.6 246 539-851 50-302 (313)
44 2ft3_A Biglycan; proteoglycan, 99.8 6.7E-21 2.3E-25 207.5 17.2 234 541-849 35-273 (332)
45 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-21 4.1E-26 210.8 10.8 129 566-701 50-180 (313)
46 2ft3_A Biglycan; proteoglycan, 99.8 3.7E-21 1.2E-25 209.6 12.3 291 567-941 34-331 (332)
47 1xku_A Decorin; proteoglycan, 99.8 4.4E-21 1.5E-25 208.9 12.8 120 542-681 34-155 (330)
48 4g8a_A TOLL-like receptor 4; l 99.8 6.9E-21 2.4E-25 228.1 15.3 356 549-942 41-554 (635)
49 1xku_A Decorin; proteoglycan, 99.8 1.3E-20 4.5E-25 205.1 15.8 121 567-705 32-155 (330)
50 4fcg_A Uncharacterized protein 99.8 7E-21 2.4E-25 206.0 11.9 219 566-848 81-309 (328)
51 1jl5_A Outer protein YOPM; leu 99.8 2.3E-20 7.9E-25 211.0 16.3 339 539-942 11-369 (454)
52 1jl5_A Outer protein YOPM; leu 99.8 7.7E-20 2.6E-24 206.8 19.0 303 539-942 91-408 (454)
53 2z80_A TOLL-like receptor 2, v 99.8 1.1E-19 3.8E-24 199.6 16.6 270 544-943 36-314 (353)
54 3g06_A SSPH2 (leucine-rich rep 99.8 3.4E-19 1.2E-23 207.4 18.9 118 540-689 41-158 (622)
55 1z7x_W Ribonuclease inhibitor; 99.8 3.3E-22 1.1E-26 229.2 -10.6 368 539-942 3-410 (461)
56 2z66_A Variable lymphocyte rec 99.8 3.2E-19 1.1E-23 191.9 11.9 224 566-850 28-258 (306)
57 3zyi_A Leucine-rich repeat-con 99.8 8E-19 2.7E-23 199.7 14.4 238 543-850 58-300 (452)
58 3zyj_A Leucine-rich repeat-con 99.8 1E-18 3.5E-23 198.1 14.6 239 543-851 47-290 (440)
59 2z66_A Variable lymphocyte rec 99.8 3.1E-18 1.1E-22 184.1 17.4 80 593-681 28-111 (306)
60 3zyi_A Leucine-rich repeat-con 99.8 8.1E-18 2.8E-22 191.4 19.6 113 810-942 189-302 (452)
61 3zyj_A Leucine-rich repeat-con 99.8 8.4E-18 2.9E-22 190.6 19.4 113 810-942 178-291 (440)
62 2z80_A TOLL-like receptor 2, v 99.8 9.7E-19 3.3E-23 192.1 10.8 252 539-851 52-312 (353)
63 3o53_A Protein LRIM1, AGAP0063 99.7 5.8E-19 2E-23 190.4 6.7 219 561-851 29-248 (317)
64 3ogk_B Coronatine-insensitive 99.7 1E-19 3.5E-24 215.6 0.8 335 563-941 161-524 (592)
65 1ozn_A Reticulon 4 receptor; N 99.7 3E-18 1E-22 182.1 11.7 144 542-703 14-161 (285)
66 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-18 1.1E-22 184.6 11.0 263 568-945 12-277 (317)
67 1z7x_W Ribonuclease inhibitor; 99.7 8.9E-21 3E-25 217.3 -10.0 366 539-941 28-438 (461)
68 3ogk_B Coronatine-insensitive 99.7 2.8E-19 9.4E-24 212.0 1.7 352 539-941 112-499 (592)
69 3oja_A Leucine-rich immune mol 99.7 9.2E-18 3.2E-22 191.7 11.5 130 786-938 139-270 (487)
70 3g06_A SSPH2 (leucine-rich rep 99.7 1.2E-16 4E-21 186.0 19.1 258 566-943 40-297 (622)
71 3oja_A Leucine-rich immune mol 99.7 1.3E-17 4.5E-22 190.4 9.7 218 562-851 30-248 (487)
72 1wwl_A Monocyte differentiatio 99.7 2.8E-18 9.7E-23 184.6 3.3 248 562-942 39-308 (312)
73 1ozn_A Reticulon 4 receptor; N 99.7 4.2E-17 1.4E-21 173.2 10.7 146 539-700 32-182 (285)
74 2p1m_B Transport inhibitor res 99.7 8.9E-19 3E-23 207.8 -3.0 137 539-681 105-245 (594)
75 1wwl_A Monocyte differentiatio 99.7 4.9E-17 1.7E-21 174.9 9.3 221 568-849 65-305 (312)
76 2z62_A TOLL-like receptor 4, v 99.7 2.3E-16 7.9E-21 166.6 11.1 204 566-830 28-237 (276)
77 2qen_A Walker-type ATPase; unk 99.6 9.6E-15 3.3E-19 160.3 23.9 293 174-512 9-348 (350)
78 2xwt_C Thyrotropin receptor; s 99.6 1.3E-15 4.6E-20 156.8 13.9 65 612-680 23-89 (239)
79 1h6u_A Internalin H; cell adhe 99.6 3.8E-16 1.3E-20 167.3 10.0 191 563-851 38-228 (308)
80 3rfs_A Internalin B, repeat mo 99.6 3.4E-15 1.2E-19 156.9 16.3 81 590-681 38-119 (272)
81 2xwt_C Thyrotropin receptor; s 99.6 7E-16 2.4E-20 158.9 10.0 108 566-686 31-145 (239)
82 1w5s_A Origin recognition comp 99.6 5.9E-15 2E-19 165.9 18.2 305 175-492 20-372 (412)
83 1p9a_G Platelet glycoprotein I 99.6 2.2E-15 7.4E-20 159.6 13.6 199 561-850 5-205 (290)
84 2ast_B S-phase kinase-associat 99.6 1.5E-16 5.2E-21 173.5 4.8 100 568-681 49-152 (336)
85 1p9a_G Platelet glycoprotein I 99.6 3E-15 1E-19 158.5 14.5 131 539-689 10-141 (290)
86 2o6q_A Variable lymphocyte rec 99.6 3.7E-15 1.3E-19 156.5 14.8 195 567-850 17-215 (270)
87 3rfs_A Internalin B, repeat mo 99.6 3.4E-15 1.2E-19 156.9 13.6 195 561-850 36-232 (272)
88 3qfl_A MLA10; coiled-coil, (CC 99.6 1.3E-15 4.5E-20 133.3 8.3 81 4-88 1-83 (115)
89 2o6q_A Variable lymphocyte rec 99.6 9.5E-15 3.2E-19 153.4 15.9 196 541-829 18-217 (270)
90 2fna_A Conserved hypothetical 99.6 4.4E-14 1.5E-18 155.5 21.7 291 175-512 11-356 (357)
91 4ay9_X Follicle-stimulating ho 99.6 1.6E-14 5.6E-19 157.8 16.4 230 610-915 19-255 (350)
92 2ast_B S-phase kinase-associat 99.6 2.2E-16 7.5E-21 172.3 -0.4 256 593-926 47-313 (336)
93 2p1m_B Transport inhibitor res 99.6 8.3E-17 2.8E-21 190.7 -5.2 159 539-705 130-299 (594)
94 2ca6_A RAN GTPase-activating p 99.5 5.8E-16 2E-20 172.3 1.7 246 560-851 26-314 (386)
95 2z62_A TOLL-like receptor 4, v 99.5 5.5E-15 1.9E-19 156.0 8.8 200 593-849 28-233 (276)
96 4glp_A Monocyte differentiatio 99.5 3.2E-14 1.1E-18 152.7 14.8 230 564-850 62-304 (310)
97 1h6u_A Internalin H; cell adhe 99.5 3.9E-14 1.3E-18 151.6 15.1 189 539-762 41-229 (308)
98 2ca6_A RAN GTPase-activating p 99.5 2.4E-16 8.2E-21 175.3 -2.4 276 585-916 24-340 (386)
99 3goz_A Leucine-rich repeat-con 99.5 4.1E-15 1.4E-19 163.5 4.9 87 751-850 168-263 (362)
100 1h6t_A Internalin B; cell adhe 99.5 7.5E-14 2.6E-18 147.9 11.6 59 619-681 64-122 (291)
101 3m19_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 139.7 15.5 171 594-849 15-188 (251)
102 4glp_A Monocyte differentiatio 99.5 6.5E-14 2.2E-18 150.3 9.9 57 750-830 251-307 (310)
103 4ay9_X Follicle-stimulating ho 99.5 2.2E-13 7.7E-18 148.7 13.6 83 786-885 172-255 (350)
104 1m9s_A Internalin B; cell inva 99.5 1.4E-13 4.6E-18 160.2 11.6 173 589-831 39-211 (605)
105 2v1u_A Cell division control p 99.5 8.6E-12 2.9E-16 138.8 25.5 296 176-492 18-352 (387)
106 3m19_A Variable lymphocyte rec 99.4 6.2E-13 2.1E-17 137.8 13.2 152 539-706 35-190 (251)
107 3goz_A Leucine-rich repeat-con 99.4 5.6E-14 1.9E-18 154.4 4.9 237 560-851 16-295 (362)
108 1fnn_A CDC6P, cell division co 99.4 1.5E-11 5E-16 137.0 24.4 299 176-493 16-353 (389)
109 1h6t_A Internalin B; cell adhe 99.4 7.5E-13 2.6E-17 140.2 12.3 167 539-762 46-212 (291)
110 4ezg_A Putative uncharacterize 99.4 1.1E-12 3.8E-17 130.1 12.1 147 539-706 44-192 (197)
111 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.5E-18 141.0 8.0 166 591-850 17-182 (263)
112 2qby_B CDC6 homolog 3, cell di 99.4 3.2E-11 1.1E-15 133.9 25.1 295 176-492 19-340 (384)
113 3cvr_A Invasion plasmid antige 99.4 5.6E-13 1.9E-17 153.0 8.9 71 593-681 80-150 (571)
114 3e6j_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 132.1 11.2 144 544-706 24-170 (229)
115 3cvr_A Invasion plasmid antige 99.4 3.3E-13 1.1E-17 154.9 6.6 130 539-703 59-188 (571)
116 2o6s_A Variable lymphocyte rec 99.4 2.3E-12 7.7E-17 129.3 11.5 148 539-708 28-178 (208)
117 2ell_A Acidic leucine-rich nuc 99.3 3.3E-12 1.1E-16 123.2 10.8 130 565-707 23-159 (168)
118 2v9t_B SLIT homolog 2 protein 99.3 2.9E-12 9.9E-17 129.4 10.7 127 566-705 32-162 (220)
119 1m9s_A Internalin B; cell inva 99.3 2.5E-12 8.4E-17 149.6 11.0 142 540-705 66-207 (605)
120 1dce_A Protein (RAB geranylger 99.3 5.7E-14 2E-18 162.4 -2.9 196 562-846 345-566 (567)
121 2qby_A CDC6 homolog 1, cell di 99.3 7.1E-11 2.4E-15 131.3 21.9 295 175-491 18-348 (386)
122 3e6j_A Variable lymphocyte rec 99.3 9.2E-12 3.1E-16 126.6 13.0 130 539-683 40-171 (229)
123 4ezg_A Putative uncharacterize 99.3 2.8E-12 9.7E-17 127.2 8.9 128 563-705 41-169 (197)
124 2je0_A Acidic leucine-rich nuc 99.3 2.2E-12 7.6E-17 121.5 7.8 126 564-702 15-147 (149)
125 1xeu_A Internalin C; cellular 99.3 6.3E-12 2.2E-16 130.7 11.8 146 539-709 41-186 (263)
126 2v70_A SLIT-2, SLIT homolog 2 99.3 7.1E-12 2.4E-16 126.5 11.8 146 543-707 15-165 (220)
127 2v9t_B SLIT homolog 2 protein 99.3 1E-11 3.4E-16 125.4 12.3 130 539-683 32-164 (220)
128 2ell_A Acidic leucine-rich nuc 99.3 3.3E-12 1.1E-16 123.2 8.3 132 539-689 24-164 (168)
129 1njg_A DNA polymerase III subu 99.3 6.3E-11 2.1E-15 122.5 17.9 198 176-390 22-231 (250)
130 1a9n_A U2A', U2A'; complex (nu 99.3 6.4E-12 2.2E-16 122.1 8.7 131 561-706 14-151 (176)
131 2o6s_A Variable lymphocyte rec 99.2 2.3E-11 7.9E-16 121.9 11.8 143 544-705 12-158 (208)
132 2v70_A SLIT-2, SLIT homolog 2 99.2 2.7E-11 9.1E-16 122.3 11.9 131 539-683 32-165 (220)
133 2chg_A Replication factor C sm 99.2 1.7E-10 5.9E-15 117.2 18.0 188 175-388 15-205 (226)
134 2je0_A Acidic leucine-rich nuc 99.2 8.7E-12 3E-16 117.4 7.1 124 539-680 17-149 (149)
135 4b8c_D Glucose-repressible alc 99.2 1.1E-11 3.9E-16 148.0 8.7 111 586-706 217-327 (727)
136 2xot_A Amphoterin-induced prot 99.2 2.1E-11 7.3E-16 133.6 8.4 133 540-688 40-179 (361)
137 3sb4_A Hypothetical leucine ri 99.2 4.6E-11 1.6E-15 129.2 10.5 100 816-937 225-328 (329)
138 2xot_A Amphoterin-induced prot 99.2 2.7E-11 9.3E-16 132.7 8.9 145 543-706 22-174 (361)
139 4b8c_D Glucose-repressible alc 99.2 6.1E-12 2.1E-16 150.3 3.1 119 560-691 218-336 (727)
140 1a9n_A U2A', U2A'; complex (nu 99.2 4.1E-11 1.4E-15 116.3 7.7 125 539-682 19-151 (176)
141 1dce_A Protein (RAB geranylger 99.1 1.1E-10 3.9E-15 134.8 10.6 108 567-690 442-551 (567)
142 1w8a_A SLIT protein; signaling 99.1 1.3E-10 4.4E-15 114.4 9.4 124 543-683 12-138 (192)
143 2wfh_A SLIT homolog 2 protein 99.1 3E-10 1E-14 111.7 11.2 121 543-682 14-137 (193)
144 2o6r_A Variable lymphocyte rec 99.1 5.9E-10 2E-14 108.3 10.8 123 543-683 11-136 (177)
145 1w8a_A SLIT protein; signaling 99.0 3.4E-10 1.1E-14 111.5 9.0 125 569-708 11-139 (192)
146 2wfh_A SLIT homolog 2 protein 99.0 4.3E-10 1.5E-14 110.6 9.7 123 569-707 13-138 (193)
147 1sxj_B Activator 1 37 kDa subu 99.0 1.7E-09 5.7E-14 116.7 14.5 187 176-388 20-211 (323)
148 1hqc_A RUVB; extended AAA-ATPa 99.0 1.6E-09 5.5E-14 116.8 13.5 184 175-390 10-214 (324)
149 1ds9_A Outer arm dynein; leuci 99.0 6.6E-12 2.2E-16 124.7 -5.1 109 560-683 42-152 (198)
150 3sb4_A Hypothetical leucine ri 99.0 1.1E-10 3.9E-15 126.0 3.6 286 564-912 23-327 (329)
151 4fdw_A Leucine rich hypothetic 99.0 7.8E-09 2.7E-13 113.9 18.2 140 791-959 248-395 (401)
152 1ds9_A Outer arm dynein; leuci 99.0 3.5E-12 1.2E-16 126.6 -8.1 110 585-706 40-151 (198)
153 2r9u_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 102.2 8.1 80 593-681 33-115 (174)
154 2r9u_A Variable lymphocyte rec 98.9 3.2E-09 1.1E-13 102.2 8.0 108 543-668 16-125 (174)
155 2o6r_A Variable lymphocyte rec 98.9 5.5E-09 1.9E-13 101.3 9.6 124 568-707 9-136 (177)
156 1iqp_A RFCS; clamp loader, ext 98.9 1.3E-08 4.6E-13 109.8 13.6 189 176-390 24-215 (327)
157 3g39_A Variable lymphocyte rec 98.8 1E-08 3.5E-13 98.4 8.8 99 568-681 11-112 (170)
158 3te6_A Regulatory protein SIR3 98.8 7.3E-08 2.5E-12 100.7 15.6 171 179-354 22-212 (318)
159 4fs7_A Uncharacterized protein 98.8 6.5E-08 2.2E-12 107.2 16.2 307 560-940 65-376 (394)
160 1jr3_A DNA polymerase III subu 98.8 9.7E-08 3.3E-12 105.2 16.6 196 177-388 16-222 (373)
161 3g39_A Variable lymphocyte rec 98.8 1.1E-08 3.8E-13 98.1 7.9 103 543-663 13-117 (170)
162 4fdw_A Leucine rich hypothetic 98.8 4.6E-08 1.6E-12 107.7 13.6 90 743-850 264-355 (401)
163 2chq_A Replication factor C sm 98.7 7.2E-08 2.5E-12 103.6 14.6 185 175-388 15-205 (319)
164 4fs7_A Uncharacterized protein 98.7 1.3E-07 4.3E-12 104.8 13.7 317 539-935 71-393 (394)
165 3bos_A Putative DNA replicatio 98.5 1.8E-07 6E-12 95.9 9.9 175 177-388 28-218 (242)
166 1sxj_D Activator 1 41 kDa subu 98.5 8.9E-07 3.1E-11 96.5 15.8 196 175-386 35-234 (353)
167 3pfi_A Holliday junction ATP-d 98.5 2.2E-06 7.4E-11 92.7 18.4 181 175-388 27-228 (338)
168 1jbk_A CLPB protein; beta barr 98.5 3E-07 1E-11 90.4 10.3 149 176-349 21-194 (195)
169 2z4s_A Chromosomal replication 98.4 5.3E-06 1.8E-10 92.3 17.7 181 204-405 130-331 (440)
170 2ifg_A High affinity nerve gro 98.4 3.7E-07 1.3E-11 99.3 8.0 100 570-682 12-114 (347)
171 1sxj_E Activator 1 40 kDa subu 98.4 1.7E-06 5.8E-11 94.3 13.1 199 176-388 13-238 (354)
172 3un9_A NLR family member X1; l 98.4 8.9E-08 3.1E-12 104.4 2.7 35 646-681 154-193 (372)
173 3pvs_A Replication-associated 98.4 6E-06 2.1E-10 91.6 17.1 180 176-388 25-216 (447)
174 3h4m_A Proteasome-activating n 98.4 5.6E-06 1.9E-10 86.9 16.2 186 175-386 15-230 (285)
175 2ifg_A High affinity nerve gro 98.4 6.2E-07 2.1E-11 97.5 8.9 98 545-658 14-114 (347)
176 3uk6_A RUVB-like 2; hexameric 98.3 3.7E-06 1.3E-10 92.1 14.8 200 176-387 43-303 (368)
177 4gt6_A Cell surface protein; l 98.3 3.5E-06 1.2E-10 93.2 13.7 127 786-940 260-388 (394)
178 3un9_A NLR family member X1; l 98.3 3.3E-08 1.1E-12 107.8 -3.0 160 539-705 72-249 (372)
179 3u61_B DNA polymerase accessor 98.3 6.2E-06 2.1E-10 88.4 14.5 182 175-386 24-215 (324)
180 1l8q_A Chromosomal replication 98.3 1.7E-05 5.7E-10 85.0 17.0 157 203-383 36-204 (324)
181 1sxj_A Activator 1 95 kDa subu 98.3 6E-06 2.1E-10 94.2 14.2 199 175-387 37-253 (516)
182 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.9E-05 9.8E-10 80.3 17.8 189 176-387 5-222 (262)
183 3syl_A Protein CBBX; photosynt 98.2 1.8E-05 6E-10 84.3 16.4 162 178-355 32-219 (309)
184 1a5t_A Delta prime, HOLB; zinc 98.2 2.9E-05 9.8E-10 83.2 17.6 170 183-386 8-204 (334)
185 3n70_A Transport activator; si 98.2 4.4E-06 1.5E-10 77.3 9.4 114 178-322 2-115 (145)
186 1sxj_C Activator 1 40 kDa subu 98.2 2.1E-05 7.2E-10 84.8 15.4 175 177-383 25-208 (340)
187 4gt6_A Cell surface protein; l 98.2 4E-05 1.4E-09 84.6 17.9 308 560-943 57-370 (394)
188 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00015 5E-09 77.1 20.0 191 175-389 10-225 (322)
189 2qp9_X Vacuolar protein sortin 98.1 5.1E-05 1.7E-09 81.9 16.5 189 175-388 49-262 (355)
190 2p65_A Hypothetical protein PF 98.1 3.1E-06 1.1E-10 82.4 6.1 46 176-227 21-66 (187)
191 1io0_A Tropomodulin; LRR prote 98.1 2.2E-06 7.6E-11 83.1 4.7 118 560-681 30-161 (185)
192 1d2n_A N-ethylmaleimide-sensit 98.1 3.4E-05 1.2E-09 80.2 14.0 172 177-379 33-229 (272)
193 3eie_A Vacuolar protein sortin 98.1 7.4E-05 2.5E-09 79.6 16.9 189 175-388 16-229 (322)
194 3d8b_A Fidgetin-like protein 1 98.0 6.1E-05 2.1E-09 81.5 15.8 190 175-389 82-297 (357)
195 3rw6_A Nuclear RNA export fact 98.0 2.5E-06 8.5E-11 86.9 4.1 106 563-677 138-257 (267)
196 2ra8_A Uncharacterized protein 98.0 2.1E-06 7.3E-11 92.5 3.2 40 789-829 277-319 (362)
197 3b9p_A CG5977-PA, isoform A; A 98.0 0.00034 1.1E-08 73.7 20.2 186 175-387 19-233 (297)
198 3ec2_A DNA replication protein 97.9 3.6E-05 1.2E-09 74.3 10.5 121 182-322 19-142 (180)
199 3cf0_A Transitional endoplasmi 97.9 0.00021 7.1E-09 75.2 16.9 182 176-382 14-223 (301)
200 2zan_A Vacuolar protein sortin 97.9 0.00023 7.9E-09 79.2 18.1 191 175-388 132-346 (444)
201 2ra8_A Uncharacterized protein 97.9 3.4E-06 1.2E-10 90.9 2.4 134 539-682 107-263 (362)
202 3co5_A Putative two-component 97.8 1.5E-05 5.1E-10 73.5 5.5 111 177-322 4-115 (143)
203 2bjv_A PSP operon transcriptio 97.8 7.3E-05 2.5E-09 77.3 11.3 133 177-322 6-150 (265)
204 2gno_A DNA polymerase III, gam 97.8 0.00013 4.3E-09 76.5 13.0 148 181-353 1-152 (305)
205 1ojl_A Transcriptional regulat 97.8 7.9E-05 2.7E-09 78.4 11.4 160 177-351 2-188 (304)
206 3e4g_A ATP synthase subunit S, 97.8 1.9E-05 6.5E-10 74.2 5.8 89 566-662 61-154 (176)
207 4h09_A Hypothetical leucine ri 97.8 0.0002 6.7E-09 78.6 14.9 56 788-848 237-294 (379)
208 3vfd_A Spastin; ATPase, microt 97.8 0.00055 1.9E-08 75.0 18.4 189 174-387 112-326 (389)
209 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.6E-10 75.2 4.6 87 593-686 61-154 (176)
210 3hu3_A Transitional endoplasmi 97.8 0.0003 1E-08 78.7 16.4 185 177-386 204-414 (489)
211 4b4t_J 26S protease regulatory 97.8 0.00044 1.5E-08 74.0 16.7 180 175-380 146-354 (405)
212 1io0_A Tropomodulin; LRR prote 97.8 6.9E-06 2.4E-10 79.6 2.1 95 583-681 26-133 (185)
213 4h09_A Hypothetical leucine ri 97.8 0.00016 5.5E-09 79.3 13.3 91 744-858 234-326 (379)
214 4fcw_A Chaperone protein CLPB; 97.8 0.00015 5.3E-09 77.0 12.8 136 178-322 18-169 (311)
215 1qvr_A CLPB protein; coiled co 97.8 5.8E-05 2E-09 91.8 10.5 155 176-352 169-344 (854)
216 3pxg_A Negative regulator of g 97.7 0.00011 3.6E-09 82.6 11.5 147 177-353 180-338 (468)
217 2w58_A DNAI, primosome compone 97.7 4.3E-05 1.5E-09 75.4 6.7 119 184-322 36-158 (202)
218 4b4t_K 26S protease regulatory 97.7 0.00045 1.5E-08 75.2 14.9 180 174-379 169-378 (428)
219 4b4t_L 26S protease subunit RP 97.7 0.00063 2.1E-08 74.2 15.6 180 175-380 179-387 (437)
220 1ofh_A ATP-dependent HSL prote 97.6 0.00045 1.5E-08 73.3 13.9 153 177-351 15-213 (310)
221 4b4t_H 26S protease regulatory 97.6 0.0011 3.8E-08 71.9 16.5 178 177-380 209-415 (467)
222 1lv7_A FTSH; alpha/beta domain 97.6 0.002 6.8E-08 66.0 18.0 187 175-386 10-224 (257)
223 2c9o_A RUVB-like 1; hexameric 97.6 0.00042 1.4E-08 77.6 13.6 97 285-386 297-409 (456)
224 3rw6_A Nuclear RNA export fact 97.6 2.4E-05 8.3E-10 79.6 3.0 81 620-703 167-259 (267)
225 1in4_A RUVB, holliday junction 97.6 0.00077 2.6E-08 72.1 14.7 179 176-387 24-223 (334)
226 2kjq_A DNAA-related protein; s 97.5 8E-05 2.7E-09 68.8 5.4 87 204-322 36-124 (149)
227 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00062 2.1E-08 82.0 13.9 155 177-353 186-362 (758)
228 4b4t_M 26S protease regulatory 97.5 0.00052 1.8E-08 74.7 11.8 179 175-379 179-386 (434)
229 2r62_A Cell division protease 97.5 8.7E-05 3E-09 76.9 5.3 160 175-354 9-197 (268)
230 3pxi_A Negative regulator of g 97.4 0.00045 1.5E-08 83.0 11.5 149 177-353 180-338 (758)
231 3pxi_A Negative regulator of g 97.4 0.00021 7.1E-09 85.9 8.6 155 177-352 491-674 (758)
232 2ce7_A Cell division protein F 97.4 0.0029 1E-07 70.1 16.4 180 176-380 15-221 (476)
233 4b4t_I 26S protease regulatory 97.3 0.00084 2.9E-08 72.1 11.0 180 174-379 179-387 (437)
234 3t15_A Ribulose bisphosphate c 97.3 0.0011 3.8E-08 69.2 11.2 26 202-227 34-59 (293)
235 3cf2_A TER ATPase, transitiona 97.1 0.0017 5.8E-08 76.4 12.0 179 177-380 204-407 (806)
236 2r44_A Uncharacterized protein 97.1 0.0023 7.8E-08 68.4 11.8 152 177-355 27-200 (331)
237 2cvh_A DNA repair and recombin 96.9 0.0027 9.4E-08 63.2 9.9 86 203-294 19-116 (220)
238 1qvr_A CLPB protein; coiled co 96.9 0.0022 7.5E-08 77.9 10.6 136 178-322 559-710 (854)
239 3m6a_A ATP-dependent protease 96.9 0.0084 2.9E-07 68.4 14.7 162 177-353 81-266 (543)
240 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0012 4.2E-08 79.3 8.2 135 177-322 458-607 (758)
241 2x8a_A Nuclear valosin-contain 96.9 0.014 4.7E-07 60.0 14.8 157 177-354 10-192 (274)
242 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00074 2.5E-08 69.6 4.8 69 204-294 123-193 (331)
243 2qgz_A Helicase loader, putati 96.8 0.00068 2.3E-08 71.2 4.6 57 182-242 133-189 (308)
244 2dhr_A FTSH; AAA+ protein, hex 96.8 0.021 7E-07 63.7 15.9 178 174-380 28-236 (499)
245 1jr3_D DNA polymerase III, del 96.7 0.024 8.3E-07 60.6 15.7 159 203-387 17-185 (343)
246 1ixz_A ATP-dependent metallopr 96.7 0.01 3.4E-07 60.6 11.7 180 175-380 14-221 (254)
247 1ypw_A Transitional endoplasmi 96.6 0.0063 2.2E-07 72.9 11.4 158 176-354 203-386 (806)
248 1iy2_A ATP-dependent metallopr 96.5 0.041 1.4E-06 56.8 15.6 181 174-380 37-245 (278)
249 2b8t_A Thymidine kinase; deoxy 96.5 0.0019 6.4E-08 63.7 4.8 112 203-322 11-125 (223)
250 1um8_A ATP-dependent CLP prote 96.4 0.073 2.5E-06 57.7 17.4 24 204-227 72-95 (376)
251 3hr8_A Protein RECA; alpha and 96.2 0.011 3.7E-07 62.7 8.5 85 203-294 60-150 (356)
252 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.016 5.3E-07 58.2 9.2 115 204-323 23-168 (235)
253 1v5w_A DMC1, meiotic recombina 95.9 0.024 8.1E-07 60.5 9.6 56 203-259 121-180 (343)
254 1xp8_A RECA protein, recombina 95.8 0.018 6.1E-07 61.6 8.4 85 203-294 73-163 (366)
255 1n0w_A DNA repair protein RAD5 95.7 0.014 4.7E-07 59.0 6.9 56 203-259 23-82 (243)
256 2z43_A DNA repair and recombin 95.7 0.022 7.4E-07 60.3 8.3 57 203-260 106-166 (324)
257 3io5_A Recombination and repai 95.6 0.024 8.2E-07 58.2 7.9 85 206-295 30-123 (333)
258 1rz3_A Hypothetical protein rb 95.6 0.012 4.1E-07 57.4 5.5 44 181-227 2-45 (201)
259 1cr0_A DNA primase/helicase; R 95.5 0.041 1.4E-06 57.5 9.6 39 203-243 34-73 (296)
260 3lw7_A Adenylate kinase relate 95.5 0.081 2.8E-06 50.0 11.0 20 205-224 2-21 (179)
261 2i1q_A DNA repair and recombin 95.4 0.017 6E-07 61.1 6.6 57 203-260 97-167 (322)
262 2zr9_A Protein RECA, recombina 95.4 0.027 9.2E-07 59.9 7.9 85 203-294 60-150 (349)
263 1pgv_A TMD-1, tropomodulin TMD 95.4 0.015 5.3E-07 55.5 5.2 118 561-681 36-167 (197)
264 2cbz_A Multidrug resistance-as 95.3 0.12 4E-06 51.7 11.9 25 203-227 30-54 (237)
265 1g5t_A COB(I)alamin adenosyltr 95.3 0.01 3.6E-07 56.4 3.9 117 205-323 29-163 (196)
266 1u94_A RECA protein, recombina 95.3 0.026 8.8E-07 60.1 7.4 84 203-293 62-151 (356)
267 2pze_A Cystic fibrosis transme 95.3 0.18 6.2E-06 50.0 12.9 24 204-227 34-57 (229)
268 3tqc_A Pantothenate kinase; bi 95.1 0.036 1.2E-06 57.8 7.6 47 179-227 69-115 (321)
269 2px0_A Flagellar biosynthesis 95.0 0.044 1.5E-06 56.8 7.9 87 203-292 104-191 (296)
270 3c8u_A Fructokinase; YP_612366 95.0 0.018 6.1E-07 56.5 4.5 39 185-227 7-45 (208)
271 3bh0_A DNAB-like replicative h 94.9 0.15 5.1E-06 53.5 11.9 53 203-259 67-119 (315)
272 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.017 6E-07 64.4 4.3 42 178-227 23-64 (500)
273 3upu_A ATP-dependent DNA helic 94.8 0.041 1.4E-06 61.5 7.3 103 205-322 46-164 (459)
274 1gvn_B Zeta; postsegregational 94.7 0.031 1E-06 57.8 5.6 42 185-227 15-56 (287)
275 3cf2_A TER ATPase, transitiona 94.7 0.14 4.8E-06 60.2 11.8 158 175-353 475-661 (806)
276 4a1f_A DNAB helicase, replicat 94.6 0.076 2.6E-06 55.8 8.4 53 203-259 45-97 (338)
277 1qhx_A CPT, protein (chloramph 94.5 0.018 6.1E-07 54.9 3.2 23 205-227 4-26 (178)
278 1zp6_A Hypothetical protein AT 94.5 0.022 7.5E-07 55.0 3.8 25 203-227 8-32 (191)
279 1odf_A YGR205W, hypothetical 3 94.4 0.029 9.9E-07 57.9 4.8 26 202-227 29-54 (290)
280 2orw_A Thymidine kinase; TMTK, 94.4 0.0047 1.6E-07 59.2 -1.2 22 205-226 4-25 (184)
281 3hws_A ATP-dependent CLP prote 94.4 0.028 9.6E-07 60.7 4.7 50 178-227 16-74 (363)
282 2p5t_B PEZT; postsegregational 94.3 0.035 1.2E-06 56.3 4.9 43 184-227 13-55 (253)
283 1ly1_A Polynucleotide kinase; 94.2 0.024 8.3E-07 54.1 3.4 22 205-226 3-24 (181)
284 2r8r_A Sensor protein; KDPD, P 94.2 0.19 6.6E-06 48.9 9.7 104 205-322 7-126 (228)
285 3lda_A DNA repair protein RAD5 94.2 0.093 3.2E-06 56.7 8.3 57 203-260 177-237 (400)
286 3kb2_A SPBC2 prophage-derived 94.2 0.021 7.3E-07 54.0 3.0 23 205-227 2-24 (173)
287 3vaa_A Shikimate kinase, SK; s 94.2 0.023 7.8E-07 55.3 3.2 24 204-227 25-48 (199)
288 3rfe_A Platelet glycoprotein I 94.2 0.05 1.7E-06 48.4 5.1 34 624-658 32-66 (130)
289 2pjz_A Hypothetical protein ST 94.2 0.29 1E-05 49.5 11.4 24 204-227 30-53 (263)
290 1vma_A Cell division protein F 94.2 0.16 5.5E-06 52.7 9.7 89 203-294 103-197 (306)
291 2eyu_A Twitching motility prot 94.2 0.1 3.4E-06 53.0 7.9 113 203-326 24-136 (261)
292 3uie_A Adenylyl-sulfate kinase 94.1 0.03 1E-06 54.5 3.8 25 203-227 24-48 (200)
293 1pzn_A RAD51, DNA repair and r 94.0 0.089 3E-06 56.0 7.6 46 203-248 130-179 (349)
294 1kgd_A CASK, peripheral plasma 94.0 0.028 9.6E-07 53.6 3.4 24 204-227 5-28 (180)
295 1pgv_A TMD-1, tropomodulin TMD 94.0 0.045 1.5E-06 52.3 4.6 94 584-681 32-136 (197)
296 3nh6_A ATP-binding cassette SU 94.0 0.12 4E-06 53.6 8.1 25 203-227 79-103 (306)
297 1g8p_A Magnesium-chelatase 38 93.9 0.023 7.7E-07 61.1 2.8 47 175-227 22-68 (350)
298 1knq_A Gluconate kinase; ALFA/ 93.8 0.039 1.3E-06 52.3 4.0 25 203-227 7-31 (175)
299 3tui_C Methionine import ATP-b 93.8 0.15 5E-06 54.1 8.6 25 203-227 53-77 (366)
300 1kag_A SKI, shikimate kinase I 93.8 0.024 8.2E-07 53.7 2.4 23 205-227 5-27 (173)
301 2rhm_A Putative kinase; P-loop 93.8 0.034 1.2E-06 53.6 3.6 25 203-227 4-28 (193)
302 3trf_A Shikimate kinase, SK; a 93.8 0.03 1E-06 53.7 3.1 24 204-227 5-28 (185)
303 3tlx_A Adenylate kinase 2; str 93.8 0.05 1.7E-06 54.7 4.9 41 183-227 12-52 (243)
304 2bbs_A Cystic fibrosis transme 93.7 0.51 1.7E-05 48.5 12.4 25 203-227 63-87 (290)
305 4eun_A Thermoresistant glucoki 93.7 0.033 1.1E-06 54.2 3.2 25 203-227 28-52 (200)
306 3t61_A Gluconokinase; PSI-biol 93.7 0.03 1E-06 54.6 2.9 24 204-227 18-41 (202)
307 3tau_A Guanylate kinase, GMP k 93.6 0.036 1.2E-06 54.3 3.4 25 203-227 7-31 (208)
308 4gp7_A Metallophosphoesterase; 93.6 0.033 1.1E-06 52.6 3.0 24 203-226 8-31 (171)
309 2ga8_A Hypothetical 39.9 kDa p 93.6 0.07 2.4E-06 55.9 5.6 46 180-227 2-47 (359)
310 1y63_A LMAJ004144AAA protein; 93.6 0.041 1.4E-06 52.6 3.6 24 203-226 9-32 (184)
311 3ice_A Transcription terminati 93.5 0.062 2.1E-06 56.6 5.0 52 188-245 163-215 (422)
312 3tr0_A Guanylate kinase, GMP k 93.5 0.039 1.3E-06 53.9 3.4 24 204-227 7-30 (205)
313 3umf_A Adenylate kinase; rossm 93.4 0.045 1.5E-06 53.6 3.6 26 202-227 27-52 (217)
314 1nks_A Adenylate kinase; therm 93.4 0.039 1.3E-06 53.2 3.2 23 205-227 2-24 (194)
315 3dm5_A SRP54, signal recogniti 93.4 0.49 1.7E-05 51.4 12.0 25 203-227 99-123 (443)
316 3rfe_A Platelet glycoprotein I 93.4 0.093 3.2E-06 46.6 5.4 53 626-682 11-66 (130)
317 1ukz_A Uridylate kinase; trans 93.3 0.05 1.7E-06 53.0 3.8 26 202-227 13-38 (203)
318 3a00_A Guanylate kinase, GMP k 93.3 0.036 1.2E-06 53.2 2.7 23 205-227 2-24 (186)
319 3iij_A Coilin-interacting nucl 93.3 0.038 1.3E-06 52.7 2.8 25 203-227 10-34 (180)
320 2qor_A Guanylate kinase; phosp 93.3 0.037 1.3E-06 54.0 2.8 25 203-227 11-35 (204)
321 2j41_A Guanylate kinase; GMP, 93.2 0.045 1.5E-06 53.5 3.4 24 204-227 6-29 (207)
322 3asz_A Uridine kinase; cytidin 93.2 0.046 1.6E-06 53.7 3.5 25 203-227 5-29 (211)
323 1kht_A Adenylate kinase; phosp 93.2 0.041 1.4E-06 53.0 3.1 23 205-227 4-26 (192)
324 1zuh_A Shikimate kinase; alpha 93.2 0.041 1.4E-06 51.7 3.0 25 203-227 6-30 (168)
325 1tev_A UMP-CMP kinase; ploop, 93.2 0.047 1.6E-06 52.8 3.4 24 204-227 3-26 (196)
326 2qt1_A Nicotinamide riboside k 93.2 0.053 1.8E-06 53.1 3.8 25 203-227 20-44 (207)
327 2bdt_A BH3686; alpha-beta prot 93.2 0.047 1.6E-06 52.5 3.3 22 205-226 3-24 (189)
328 1uf9_A TT1252 protein; P-loop, 93.2 0.051 1.7E-06 52.9 3.6 26 202-227 6-31 (203)
329 3jvv_A Twitching mobility prot 93.1 0.075 2.6E-06 56.5 5.1 111 205-326 124-234 (356)
330 2ffh_A Protein (FFH); SRP54, s 93.1 0.29 1E-05 53.1 9.7 24 204-227 98-121 (425)
331 2c95_A Adenylate kinase 1; tra 93.1 0.048 1.6E-06 52.8 3.3 25 203-227 8-32 (196)
332 2yvu_A Probable adenylyl-sulfa 93.1 0.061 2.1E-06 51.6 4.0 26 202-227 11-36 (186)
333 2ze6_A Isopentenyl transferase 93.0 0.048 1.7E-06 55.2 3.3 23 205-227 2-24 (253)
334 1via_A Shikimate kinase; struc 93.0 0.038 1.3E-06 52.3 2.4 23 205-227 5-27 (175)
335 1ye8_A Protein THEP1, hypothet 93.0 0.051 1.8E-06 51.5 3.3 22 206-227 2-23 (178)
336 3fwy_A Light-independent proto 93.0 0.055 1.9E-06 56.5 3.7 41 202-244 46-86 (314)
337 2cdn_A Adenylate kinase; phosp 93.0 0.056 1.9E-06 52.6 3.6 26 202-227 18-43 (201)
338 1ex7_A Guanylate kinase; subst 93.0 0.041 1.4E-06 52.3 2.5 23 205-227 2-24 (186)
339 1q57_A DNA primase/helicase; d 93.0 0.29 9.8E-06 55.3 9.9 54 203-259 241-294 (503)
340 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.054 1.9E-06 55.2 3.6 24 204-227 4-27 (260)
341 3e1s_A Exodeoxyribonuclease V, 92.9 0.27 9.3E-06 56.1 9.7 97 205-321 205-314 (574)
342 2r6a_A DNAB helicase, replicat 92.9 0.24 8.3E-06 55.0 9.1 51 203-256 202-252 (454)
343 3ney_A 55 kDa erythrocyte memb 92.9 0.053 1.8E-06 52.0 3.2 25 203-227 18-42 (197)
344 2ck3_D ATP synthase subunit be 92.9 0.35 1.2E-05 52.6 9.8 65 188-258 142-207 (482)
345 3cm0_A Adenylate kinase; ATP-b 92.8 0.055 1.9E-06 51.8 3.3 24 204-227 4-27 (186)
346 1jjv_A Dephospho-COA kinase; P 92.8 0.059 2E-06 52.6 3.5 22 205-226 3-24 (206)
347 1lvg_A Guanylate kinase, GMP k 92.8 0.042 1.4E-06 53.3 2.4 23 205-227 5-27 (198)
348 3bgw_A DNAB-like replicative h 92.8 0.38 1.3E-05 53.0 10.3 52 203-258 196-247 (444)
349 3e70_C DPA, signal recognition 92.8 0.35 1.2E-05 50.7 9.6 25 203-227 128-152 (328)
350 2iyv_A Shikimate kinase, SK; t 92.8 0.041 1.4E-06 52.6 2.3 23 205-227 3-25 (184)
351 1qf9_A UMP/CMP kinase, protein 92.8 0.069 2.4E-06 51.5 3.9 25 203-227 5-29 (194)
352 2q6t_A DNAB replication FORK h 92.7 0.34 1.2E-05 53.6 9.9 54 203-259 199-252 (444)
353 2plr_A DTMP kinase, probable t 92.7 0.063 2.1E-06 52.7 3.6 24 204-227 4-27 (213)
354 1tue_A Replication protein E1; 92.7 0.083 2.8E-06 50.4 4.1 38 185-227 44-81 (212)
355 2if2_A Dephospho-COA kinase; a 92.7 0.054 1.9E-06 52.8 3.0 22 205-226 2-23 (204)
356 3kl4_A SRP54, signal recogniti 92.7 0.37 1.3E-05 52.4 9.8 25 203-227 96-120 (433)
357 2bwj_A Adenylate kinase 5; pho 92.7 0.055 1.9E-06 52.5 3.0 24 204-227 12-35 (199)
358 2vli_A Antibiotic resistance p 92.6 0.039 1.4E-06 52.7 1.9 25 203-227 4-28 (183)
359 2jaq_A Deoxyguanosine kinase; 92.6 0.057 1.9E-06 52.6 3.1 22 206-227 2-23 (205)
360 1uj2_A Uridine-cytidine kinase 92.6 0.065 2.2E-06 54.3 3.6 26 202-227 20-45 (252)
361 2zts_A Putative uncharacterize 92.6 0.19 6.4E-06 50.7 7.1 50 203-255 29-78 (251)
362 3gd7_A Fusion complex of cysti 92.6 0.35 1.2E-05 52.0 9.3 25 203-227 46-70 (390)
363 1ls1_A Signal recognition part 92.6 0.42 1.4E-05 49.4 9.7 87 204-293 98-190 (295)
364 1htw_A HI0065; nucleotide-bind 92.6 0.079 2.7E-06 48.9 3.8 25 203-227 32-56 (158)
365 1cke_A CK, MSSA, protein (cyti 92.6 0.058 2E-06 53.7 3.1 23 205-227 6-28 (227)
366 2bbw_A Adenylate kinase 4, AK4 92.5 0.063 2.2E-06 54.2 3.4 23 204-226 27-49 (246)
367 1e6c_A Shikimate kinase; phosp 92.5 0.049 1.7E-06 51.4 2.4 23 205-227 3-25 (173)
368 3cmu_A Protein RECA, recombina 92.5 0.19 6.6E-06 64.7 8.3 84 203-293 1426-1515(2050)
369 1znw_A Guanylate kinase, GMP k 92.5 0.067 2.3E-06 52.3 3.4 25 203-227 19-43 (207)
370 1ny5_A Transcriptional regulat 92.5 0.61 2.1E-05 50.4 11.3 46 178-227 138-183 (387)
371 1xjc_A MOBB protein homolog; s 92.5 0.066 2.3E-06 49.8 3.1 25 203-227 3-27 (169)
372 3aez_A Pantothenate kinase; tr 92.4 0.075 2.6E-06 55.5 3.9 26 202-227 88-113 (312)
373 3dzd_A Transcriptional regulat 92.4 0.25 8.6E-06 53.0 8.1 47 177-227 129-175 (368)
374 2jeo_A Uridine-cytidine kinase 92.4 0.077 2.6E-06 53.5 3.8 25 203-227 24-48 (245)
375 2pt5_A Shikimate kinase, SK; a 92.3 0.068 2.3E-06 50.2 3.1 22 206-227 2-23 (168)
376 1s96_A Guanylate kinase, GMP k 92.3 0.074 2.5E-06 52.3 3.4 25 203-227 15-39 (219)
377 2pez_A Bifunctional 3'-phospho 92.2 0.081 2.8E-06 50.3 3.6 25 203-227 4-28 (179)
378 2grj_A Dephospho-COA kinase; T 92.2 0.076 2.6E-06 51.0 3.3 25 203-227 11-35 (192)
379 1z6g_A Guanylate kinase; struc 92.2 0.063 2.2E-06 52.9 2.8 25 203-227 22-46 (218)
380 1j8m_F SRP54, signal recogniti 92.2 0.41 1.4E-05 49.5 9.0 90 204-295 98-192 (297)
381 1aky_A Adenylate kinase; ATP:A 92.2 0.072 2.5E-06 52.7 3.2 24 204-227 4-27 (220)
382 2yhs_A FTSY, cell division pro 92.2 0.29 1E-05 53.8 8.2 43 202-247 291-333 (503)
383 2wwf_A Thymidilate kinase, put 92.2 0.071 2.4E-06 52.3 3.2 25 203-227 9-33 (212)
384 1nn5_A Similar to deoxythymidy 92.1 0.075 2.6E-06 52.2 3.3 24 204-227 9-32 (215)
385 4a74_A DNA repair and recombin 92.1 0.2 6.8E-06 49.8 6.5 43 203-245 24-70 (231)
386 1sq5_A Pantothenate kinase; P- 92.1 0.15 5.2E-06 53.3 5.7 26 202-227 78-103 (308)
387 1sky_E F1-ATPase, F1-ATP synth 92.1 0.12 3.9E-06 56.5 4.8 51 205-256 152-203 (473)
388 3tif_A Uncharacterized ABC tra 92.1 0.1 3.6E-06 51.9 4.2 35 203-240 30-64 (235)
389 2f6r_A COA synthase, bifunctio 92.0 0.092 3.1E-06 54.1 3.9 24 203-226 74-97 (281)
390 2pbr_A DTMP kinase, thymidylat 92.0 0.077 2.6E-06 51.2 3.1 22 206-227 2-23 (195)
391 1zd8_A GTP:AMP phosphotransfer 92.0 0.073 2.5E-06 52.9 3.0 25 203-227 6-30 (227)
392 2pt7_A CAG-ALFA; ATPase, prote 92.0 0.19 6.6E-06 52.9 6.4 104 205-323 172-275 (330)
393 1rj9_A FTSY, signal recognitio 91.9 0.091 3.1E-06 54.6 3.7 25 203-227 101-125 (304)
394 2v54_A DTMP kinase, thymidylat 91.9 0.087 3E-06 51.3 3.4 24 204-227 4-27 (204)
395 4e22_A Cytidylate kinase; P-lo 91.8 0.089 3.1E-06 53.2 3.5 24 204-227 27-50 (252)
396 1zak_A Adenylate kinase; ATP:A 91.8 0.073 2.5E-06 52.7 2.7 25 203-227 4-28 (222)
397 2hf9_A Probable hydrogenase ni 91.7 0.11 3.6E-06 51.6 3.9 39 183-227 23-61 (226)
398 2xxa_A Signal recognition part 91.7 0.53 1.8E-05 51.4 9.7 41 203-244 99-139 (433)
399 2onk_A Molybdate/tungstate ABC 91.7 0.12 4E-06 51.7 4.2 23 205-227 25-47 (240)
400 1zu4_A FTSY; GTPase, signal re 91.7 0.34 1.2E-05 50.6 7.9 39 203-243 104-142 (320)
401 1m7g_A Adenylylsulfate kinase; 91.7 0.1 3.5E-06 51.2 3.6 25 203-227 24-48 (211)
402 3b5x_A Lipid A export ATP-bind 91.7 0.87 3E-05 52.3 12.0 25 203-227 368-392 (582)
403 3fb4_A Adenylate kinase; psych 91.7 0.086 2.9E-06 51.9 3.1 22 206-227 2-23 (216)
404 1g41_A Heat shock protein HSLU 91.6 0.13 4.3E-06 56.1 4.5 51 177-227 15-73 (444)
405 1fx0_B ATP synthase beta chain 91.6 0.29 1E-05 53.5 7.3 99 188-292 154-275 (498)
406 1b0u_A Histidine permease; ABC 91.5 0.13 4.3E-06 52.3 4.2 25 203-227 31-55 (262)
407 3dl0_A Adenylate kinase; phosp 91.5 0.092 3.2E-06 51.7 3.1 22 206-227 2-23 (216)
408 2z0h_A DTMP kinase, thymidylat 91.5 0.094 3.2E-06 50.7 3.1 22 206-227 2-23 (197)
409 2ged_A SR-beta, signal recogni 91.4 0.16 5.3E-06 48.9 4.7 25 203-227 47-71 (193)
410 1vht_A Dephospho-COA kinase; s 91.4 0.11 3.9E-06 51.1 3.7 23 204-226 4-26 (218)
411 2pcj_A ABC transporter, lipopr 91.4 0.12 4.2E-06 51.0 3.9 24 204-227 30-53 (224)
412 3gfo_A Cobalt import ATP-bindi 91.4 0.12 4.2E-06 52.6 4.0 24 204-227 34-57 (275)
413 2j37_W Signal recognition part 91.4 1.2 4.1E-05 49.5 12.2 26 202-227 99-124 (504)
414 1mv5_A LMRA, multidrug resista 91.3 0.16 5.5E-06 50.9 4.8 25 203-227 27-51 (243)
415 2olj_A Amino acid ABC transpor 91.2 0.14 4.9E-06 51.8 4.2 25 203-227 49-73 (263)
416 3k1j_A LON protease, ATP-depen 91.2 0.1 3.4E-06 60.5 3.4 44 176-227 40-83 (604)
417 4g1u_C Hemin import ATP-bindin 91.2 0.15 5.2E-06 51.8 4.4 25 203-227 36-60 (266)
418 3be4_A Adenylate kinase; malar 91.2 0.088 3E-06 51.9 2.6 24 204-227 5-28 (217)
419 3p32_A Probable GTPase RV1496/ 91.1 0.22 7.4E-06 53.3 5.8 38 186-227 65-102 (355)
420 3nwj_A ATSK2; P loop, shikimat 91.1 0.091 3.1E-06 52.8 2.6 23 205-227 49-71 (250)
421 3zvl_A Bifunctional polynucleo 91.1 0.19 6.5E-06 55.0 5.4 26 202-227 256-281 (416)
422 1gtv_A TMK, thymidylate kinase 91.1 0.062 2.1E-06 52.8 1.4 22 206-227 2-23 (214)
423 2f1r_A Molybdopterin-guanine d 91.1 0.07 2.4E-06 50.0 1.6 23 205-227 3-25 (171)
424 3sr0_A Adenylate kinase; phosp 91.0 0.11 3.9E-06 50.4 3.1 22 206-227 2-23 (206)
425 2i3b_A HCR-ntpase, human cance 91.0 0.1 3.5E-06 49.9 2.7 22 206-227 3-24 (189)
426 1vpl_A ABC transporter, ATP-bi 90.9 0.16 5.4E-06 51.3 4.2 25 203-227 40-64 (256)
427 3b9q_A Chloroplast SRP recepto 90.9 0.13 4.6E-06 53.3 3.8 25 203-227 99-123 (302)
428 2ehv_A Hypothetical protein PH 90.9 0.11 3.7E-06 52.5 3.0 40 203-243 29-68 (251)
429 2ixe_A Antigen peptide transpo 90.8 0.16 5.6E-06 51.7 4.2 25 203-227 44-68 (271)
430 3r20_A Cytidylate kinase; stru 90.8 0.12 4.2E-06 51.0 3.1 24 204-227 9-32 (233)
431 3lnc_A Guanylate kinase, GMP k 90.8 0.089 3E-06 52.5 2.2 24 204-227 27-51 (231)
432 3a8t_A Adenylate isopentenyltr 90.7 0.16 5.4E-06 52.9 4.1 25 203-227 39-63 (339)
433 3vkw_A Replicase large subunit 90.7 0.39 1.3E-05 52.0 7.2 26 201-226 158-183 (446)
434 2wsm_A Hydrogenase expression/ 90.7 0.2 6.7E-06 49.5 4.7 41 181-227 13-53 (221)
435 2ff7_A Alpha-hemolysin translo 90.7 0.16 5.5E-06 51.0 4.0 24 204-227 35-58 (247)
436 2j9r_A Thymidine kinase; TK1, 90.7 0.18 6.1E-06 48.7 4.1 109 203-322 27-137 (214)
437 1sgw_A Putative ABC transporte 90.7 0.14 4.7E-06 50.1 3.4 24 204-227 35-58 (214)
438 3cmu_A Protein RECA, recombina 90.7 0.4 1.4E-05 61.9 8.3 85 203-294 382-472 (2050)
439 1ji0_A ABC transporter; ATP bi 90.6 0.16 5.6E-06 50.7 4.0 24 204-227 32-55 (240)
440 1np6_A Molybdopterin-guanine d 90.6 0.14 4.8E-06 48.1 3.2 25 203-227 5-29 (174)
441 2yz2_A Putative ABC transporte 90.6 0.18 6E-06 51.4 4.2 25 203-227 32-56 (266)
442 1g6h_A High-affinity branched- 90.6 0.16 5.6E-06 51.3 4.0 25 203-227 32-56 (257)
443 1ak2_A Adenylate kinase isoenz 90.5 0.14 4.8E-06 51.1 3.4 25 203-227 15-39 (233)
444 4akg_A Glutathione S-transfera 90.4 1.1 3.7E-05 60.2 12.3 155 205-376 1268-1452(2695)
445 3ake_A Cytidylate kinase; CMP 90.4 0.13 4.6E-06 50.1 3.1 22 206-227 4-25 (208)
446 3d3q_A TRNA delta(2)-isopenten 90.4 0.14 4.8E-06 53.5 3.3 23 205-227 8-30 (340)
447 2xb4_A Adenylate kinase; ATP-b 90.4 0.14 4.7E-06 50.7 3.1 22 206-227 2-23 (223)
448 1e4v_A Adenylate kinase; trans 90.3 0.13 4.6E-06 50.4 3.0 22 206-227 2-23 (214)
449 3crm_A TRNA delta(2)-isopenten 90.3 0.16 5.6E-06 52.6 3.7 24 204-227 5-28 (323)
450 2dr3_A UPF0273 protein PH0284; 90.3 0.16 5.3E-06 51.2 3.6 40 203-244 22-61 (247)
451 3exa_A TRNA delta(2)-isopenten 90.3 0.17 5.8E-06 52.0 3.7 24 204-227 3-26 (322)
452 3b85_A Phosphate starvation-in 90.1 0.12 4.2E-06 50.2 2.4 23 205-227 23-45 (208)
453 3foz_A TRNA delta(2)-isopenten 90.1 0.19 6.6E-06 51.5 3.9 25 203-227 9-33 (316)
454 2qmh_A HPR kinase/phosphorylas 90.0 0.19 6.6E-06 47.6 3.6 24 204-227 34-57 (205)
455 2og2_A Putative signal recogni 89.9 0.19 6.3E-06 53.4 3.8 25 203-227 156-180 (359)
456 1ltq_A Polynucleotide kinase; 89.9 0.17 5.7E-06 52.9 3.4 22 205-226 3-24 (301)
457 3cmw_A Protein RECA, recombina 89.9 0.41 1.4E-05 61.0 7.4 84 202-292 381-470 (1706)
458 3j16_B RLI1P; ribosome recycli 89.8 1.4 4.9E-05 50.3 11.3 125 205-329 379-534 (608)
459 2ihy_A ABC transporter, ATP-bi 89.8 0.21 7.1E-06 51.1 4.0 24 204-227 47-70 (279)
460 2fz4_A DNA repair protein RAD2 89.8 1.6 5.5E-05 43.3 10.5 101 207-321 111-227 (237)
461 1oix_A RAS-related protein RAB 89.7 0.17 5.8E-06 48.6 3.2 24 204-227 29-52 (191)
462 2zej_A Dardarin, leucine-rich 89.7 0.16 5.3E-06 48.5 2.8 22 206-227 4-25 (184)
463 2wji_A Ferrous iron transport 89.7 0.2 6.8E-06 46.7 3.5 23 205-227 4-26 (165)
464 2v9p_A Replication protein E1; 89.7 0.17 5.8E-06 52.3 3.2 25 203-227 125-149 (305)
465 1a7j_A Phosphoribulokinase; tr 89.7 0.098 3.4E-06 54.0 1.5 25 203-227 4-28 (290)
466 2zu0_C Probable ATP-dependent 89.6 0.19 6.4E-06 51.2 3.5 25 203-227 45-69 (267)
467 3end_A Light-independent proto 89.5 0.31 1.1E-05 51.0 5.2 44 202-247 39-82 (307)
468 3qf4_A ABC transporter, ATP-bi 89.5 1.3 4.3E-05 50.9 10.7 25 203-227 368-392 (587)
469 2ghi_A Transport protein; mult 89.5 0.18 6.3E-06 51.0 3.3 25 203-227 45-69 (260)
470 1yrb_A ATP(GTP)binding protein 89.5 0.21 7.1E-06 50.9 3.7 26 202-227 12-37 (262)
471 4eaq_A DTMP kinase, thymidylat 89.4 0.22 7.5E-06 49.4 3.7 25 203-227 25-49 (229)
472 2d2e_A SUFC protein; ABC-ATPas 89.4 0.19 6.4E-06 50.6 3.3 24 204-227 29-52 (250)
473 1svm_A Large T antigen; AAA+ f 89.4 0.31 1.1E-05 52.1 5.1 25 203-227 168-192 (377)
474 1q3t_A Cytidylate kinase; nucl 89.4 0.2 6.7E-06 50.1 3.4 26 202-227 14-39 (236)
475 1xx6_A Thymidine kinase; NESG, 89.2 0.13 4.5E-06 49.1 1.8 109 203-322 7-117 (191)
476 1w36_D RECD, exodeoxyribonucle 89.2 0.9 3.1E-05 52.3 9.2 23 205-227 165-187 (608)
477 2dyk_A GTP-binding protein; GT 89.2 0.23 7.9E-06 45.8 3.6 23 205-227 2-24 (161)
478 3j16_B RLI1P; ribosome recycli 89.2 2.9 0.0001 47.8 13.2 25 203-227 102-126 (608)
479 3fvq_A Fe(3+) IONS import ATP- 89.1 0.27 9.3E-06 52.0 4.3 24 204-227 30-53 (359)
480 2vp4_A Deoxynucleoside kinase; 89.1 0.2 6.7E-06 49.8 3.1 26 202-227 18-43 (230)
481 2f9l_A RAB11B, member RAS onco 89.0 0.21 7.3E-06 48.2 3.3 24 204-227 5-28 (199)
482 2qi9_C Vitamin B12 import ATP- 88.9 0.2 6.8E-06 50.3 3.0 24 204-227 26-49 (249)
483 3llm_A ATP-dependent RNA helic 88.7 1.1 3.9E-05 44.4 8.5 21 205-225 77-97 (235)
484 1u0j_A DNA replication protein 88.7 0.39 1.3E-05 48.1 5.0 38 186-227 90-127 (267)
485 2nq2_C Hypothetical ABC transp 88.7 0.21 7.2E-06 50.3 3.0 24 204-227 31-54 (253)
486 2lkc_A Translation initiation 88.6 0.33 1.1E-05 45.7 4.3 25 203-227 7-31 (178)
487 2yl4_A ATP-binding cassette SU 88.6 0.73 2.5E-05 53.1 7.9 25 203-227 369-393 (595)
488 3qf4_B Uncharacterized ABC tra 88.5 0.57 2E-05 54.0 6.9 25 203-227 380-404 (598)
489 3ld9_A DTMP kinase, thymidylat 88.4 0.51 1.7E-05 46.2 5.5 26 202-227 19-44 (223)
490 3hjn_A DTMP kinase, thymidylat 88.4 0.41 1.4E-05 46.1 4.8 22 206-227 2-23 (197)
491 1nlf_A Regulatory protein REPA 88.4 0.23 7.8E-06 51.1 3.1 25 203-227 29-53 (279)
492 1g8f_A Sulfate adenylyltransfe 88.3 0.33 1.1E-05 54.0 4.5 46 178-227 373-418 (511)
493 2ocp_A DGK, deoxyguanosine kin 88.2 0.27 9.2E-06 49.3 3.5 24 204-227 2-25 (241)
494 2wjg_A FEOB, ferrous iron tran 88.2 0.28 9.5E-06 46.7 3.5 25 203-227 6-30 (188)
495 3rlf_A Maltose/maltodextrin im 88.1 0.35 1.2E-05 51.5 4.4 24 204-227 29-52 (381)
496 4edh_A DTMP kinase, thymidylat 88.1 0.64 2.2E-05 45.3 5.9 25 203-227 5-29 (213)
497 2yyz_A Sugar ABC transporter, 88.0 0.36 1.2E-05 51.2 4.4 25 203-227 28-52 (359)
498 2yv5_A YJEQ protein; hydrolase 88.0 0.37 1.3E-05 50.0 4.5 33 185-227 155-187 (302)
499 2nzj_A GTP-binding protein REM 88.0 0.27 9.2E-06 46.1 3.2 24 204-227 4-27 (175)
500 3sop_A Neuronal-specific septi 88.0 0.24 8.4E-06 50.4 3.0 22 206-227 4-25 (270)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.1e-45 Score=425.06 Aligned_cols=316 Identities=19% Similarity=0.272 Sum_probs=253.1
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHc--CccccccCCceEEEEecCCC--CHHHHHHHH
Q 048084 180 FGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYN--NGDVKKYFDERIWVCVSDPF--DEFRIAKAI 255 (967)
Q Consensus 180 vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 255 (967)
|||++++++|.++|.... .+..++|+|+||||+||||||+++|+ +.+++.+|++++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 23679999999999999999999998 56789999999999999875 789999999
Q ss_pred HHHhccCCC-------CCCChHHHHHHHHHHhccC-cceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHHh
Q 048084 256 IEALTDSAS-------NFGEFQSLMQRIQKHVARK-KLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIAR 327 (967)
Q Consensus 256 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~ 327 (967)
+++++.... ...+.+.+...+++.+.++ |+||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986421 1234566788999999996 9999999999863222321 27999999999999988
Q ss_pred hhC-CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCCCHHHHHHHHhhh
Q 048084 328 IMG-SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSKNTRKEWQNILESE 406 (967)
Q Consensus 328 ~~~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~~ 406 (967)
.++ ...+|+|++|+.++||+||.+.+++.. .++...+++.+|+++|+|+||||+++|+.++.+ + .+|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 775 346799999999999999999987543 246778889999999999999999999999766 3 2333333333
Q ss_pred hhhhhhhcccchhHHHHhHhcCChhhHHHHh-----------hhccCCCCcccCHHHHHHHHHhc--CCccccc-cccHH
Q 048084 407 IWELEAVKKGLLAPLLLSYNELPSKVKHCFS-----------YCAVFPKDYEMWKDKLIELWMAQ--GFLNNKR-NKEMA 472 (967)
Q Consensus 407 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~-----------~~~~fp~~~~i~~~~li~~w~a~--g~~~~~~-~~~~~ 472 (967)
.+.. ...++..++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.... +...+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 2221 2456888999999999999999999 999999999998 8899999 9998766 56678
Q ss_pred HHHHHHHHHHHhCCCccccCCCCCCCeeeEEecchHHHHHHHhhccccE
Q 048084 473 EIGEEYFNVLASRSFFQDFGRGYDGEIYDCKMHDIVHDFAQYLCSNECL 521 (967)
Q Consensus 473 ~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hd~i~~~~~~~~~~~~~ 521 (967)
++++ +|++|+++||++....+ ...+|+|||++|++++.++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8887 99999999999986543 334699999999999988877654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.1e-36 Score=350.97 Aligned_cols=285 Identities=19% Similarity=0.185 Sum_probs=225.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCc-eEEEEecCCCCHHHHHHHHH
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDE-RIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 256 (967)
..|||++++++|.++|.... ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++..+...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999997432 4689999999999999999999987778889985 99999999988888888887
Q ss_pred HHhccCC---CCC--------CChHHHHHHHHHHh---ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 257 EALTDSA---SNF--------GEFQSLMQRIQKHV---ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 257 ~~l~~~~---~~~--------~~~~~~~~~l~~~l---~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
+.+.... ... .+.+++...+++.+ .++|+||||||||+. ..|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 7654211 100 12345566677765 679999999999984 455443 2 68999999999
Q ss_pred hhHHhhhCCcceeecC------CCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCC-C
Q 048084 323 EAIARIMGSIDIISIN------VLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSKN-T 395 (967)
Q Consensus 323 ~~v~~~~~~~~~~~l~------~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~-~ 395 (967)
+.++..+.....+.++ +|+.+||++||.+.. +.. . .++..+ .|+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPRE---VLTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCC
Confidence 9988654433456666 999999999999884 221 1 112233 39999999999999999874 6
Q ss_pred HHHHHHHHhhhhhhhhhhcccchhHHHHhHhcCChhh-HHHHhhhccCCCCcccCHHHHHHHHHhcCCccccccccHHHH
Q 048084 396 RKEWQNILESEIWELEAVKKGLLAPLLLSYNELPSKV-KHCFSYCAVFPKDYEMWKDKLIELWMAQGFLNNKRNKEMAEI 474 (967)
Q Consensus 396 ~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~~~~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 474 (967)
...|... ....+..+|.+||+.||++. |.||++||+||+++.|+++.++.+|+++| ++.
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eed 403 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSD 403 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHH
Confidence 7888652 13468899999999999999 99999999999999999999999999887 134
Q ss_pred HHHHHHHHHhCCCccccCCCCCCCeeeEEecchHHHHH
Q 048084 475 GEEYFNVLASRSFFQDFGRGYDGEIYDCKMHDIVHDFA 512 (967)
Q Consensus 475 ~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hd~i~~~~ 512 (967)
+..+|++|+++||++... ...+|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 788999999999998731 224689999999855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-35 Score=382.66 Aligned_cols=315 Identities=21% Similarity=0.309 Sum_probs=246.9
Q ss_pred CCCCCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccc-cc-cCCceEEEEecCCCC-
Q 048084 171 ISSIDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDV-KK-YFDERIWVCVSDPFD- 247 (967)
Q Consensus 171 ~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~-~f~~~~wv~~~~~~~- 247 (967)
..|.++..||||++++++|.+.|.... +..++|+|+||||+||||||+++|++.+. .. .|+.++||++++..+
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 345566789999999999999997543 36799999999999999999999998543 34 446888999987543
Q ss_pred -HHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHhccC--cceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEec
Q 048084 248 -EFRIAKAIIEALTDSA----SNFGEFQSLMQRIQKHVARK--KLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITT 320 (967)
Q Consensus 248 -~~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~~--r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTt 320 (967)
....+..++..+.... ......+++...++..+.++ |+||||||+|+. ..| . ...+|++|||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~---~----~~~~~~~ilvTt 264 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVL---K----AFDNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHH---T----TTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHH---H----hhcCCCEEEEEc
Confidence 3444666777776532 22356778888899999877 999999999975 222 2 225789999999
Q ss_pred CChhHHhh-hCCcceeecCC-CChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCCCHHH
Q 048084 321 RKEAIARI-MGSIDIISINV-LSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSKNTRKE 398 (967)
Q Consensus 321 r~~~v~~~-~~~~~~~~l~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~ 398 (967)
|++.++.. .+....+.+++ |+++++++||...++... +...+.+++|+++|+|+||||+++|++|+.+. ..
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~ 337 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SC
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hH
Confidence 99988854 45567899996 999999999998874322 23345689999999999999999999998775 35
Q ss_pred HHHHHhhhhhhh----h----hhcccchhHHHHhHhcCChhhHHHHhhhccCCCCcccCHHHHHHHHHhcCCcccccccc
Q 048084 399 WQNILESEIWEL----E----AVKKGLLAPLLLSYNELPSKVKHCFSYCAVFPKDYEMWKDKLIELWMAQGFLNNKRNKE 470 (967)
Q Consensus 399 w~~~l~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~~~~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~ 470 (967)
|..+++...... . .....+..++.+||+.||++.|.||+|||+||+++.|+++.++.+|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------
Confidence 666655432211 1 1114588999999999999999999999999999999999999999664
Q ss_pred HHHHHHHHHHHHHhCCCccccCCCCCCCeeeEEecchHHHHHHHhhccc
Q 048084 471 MAEIGEEYFNVLASRSFFQDFGRGYDGEIYDCKMHDIVHDFAQYLCSNE 519 (967)
Q Consensus 471 ~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hd~i~~~~~~~~~~~ 519 (967)
++.++.++++|++++|++.... +...+|+||+++|++++..+.++
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNRN---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEES---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHHHHhccceEEecC---CCceEEEecHHHHHHHHhhhhHH
Confidence 4668899999999999986432 34457999999999999987665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=9.7e-33 Score=326.24 Aligned_cols=308 Identities=21% Similarity=0.308 Sum_probs=233.4
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccc-cccC-CceEEEEecCCCCHHHH
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDV-KKYF-DERIWVCVSDPFDEFRI 251 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~ 251 (967)
..+..||||++++++|.+.|.... ++.++|+|+|+||+||||||++++++.+. ..+| +.++|++++.. +...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHH
Confidence 455679999999999999997432 35789999999999999999999998655 7788 58999999865 34444
Q ss_pred HHHH---HHHhccC----CCCCCChHHHHHHHHHHhcc--CcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 252 AKAI---IEALTDS----ASNFGEFQSLMQRIQKHVAR--KKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 252 ~~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
+..+ +..++.. .....+.+.....+...+.+ +++||||||+|+. ..+.. ..+|++||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l~~----l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVLKA----FDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHHHT----TCSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHHHH----hcCCCeEEEECCC
Confidence 4444 3444421 12235567778888888866 7999999999864 22222 2568999999999
Q ss_pred hhHHhhhCCcceeec---CCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHHccCCCHHHH
Q 048084 323 EAIARIMGSIDIISI---NVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLLRSKNTRKEW 399 (967)
Q Consensus 323 ~~v~~~~~~~~~~~l---~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w 399 (967)
..++..+.. ..+++ ++|+.+|++++|...++.. .....+.+.+|+++|+|+|+||+++|+.++.+. ..|
T Consensus 267 ~~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w 338 (591)
T 1z6t_A 267 KSVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (591)
T ss_dssp GGGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH
T ss_pred cHHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhH
Confidence 887765432 33443 6899999999999987542 112234588999999999999999999998764 357
Q ss_pred HHHHhhhhhhh--------hhhcccchhHHHHhHhcCChhhHHHHhhhccCCCCcccCHHHHHHHHHhcCCccccccccH
Q 048084 400 QNILESEIWEL--------EAVKKGLLAPLLLSYNELPSKVKHCFSYCAVFPKDYEMWKDKLIELWMAQGFLNNKRNKEM 471 (967)
Q Consensus 400 ~~~l~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~~~~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~ 471 (967)
..+++...... ......+..++..||+.||++.|.||++||+||+++.|+...+...|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------- 407 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------- 407 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------
Confidence 76665422111 01123578899999999999999999999999999999999999999653
Q ss_pred HHHHHHHHHHHHhCCCccccCCCCCCCeeeEEecchHHHHHHHhhc
Q 048084 472 AEIGEEYFNVLASRSFFQDFGRGYDGEIYDCKMHDIVHDFAQYLCS 517 (967)
Q Consensus 472 ~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hd~i~~~~~~~~~ 517 (967)
.+.+..++++|+++||++... ++...+|+||+++|++++....
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhhh
Confidence 234788999999999998533 2344579999999999998743
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=4.9e-28 Score=294.23 Aligned_cols=386 Identities=21% Similarity=0.179 Sum_probs=246.5
Q ss_pred ccEEEEEEEecCCC-CCCCcccccccC-CCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccc-cc
Q 048084 539 KKILHLMLALDRGA-LIPMPIWDNVKG-LRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIK-EI 615 (967)
Q Consensus 539 ~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~-~l 615 (967)
..++++.+..+.+. .+| ..+.. +++|++|++++|. +....|..|.++++|++|+|+ + +.+. .+
T Consensus 269 ~~L~~L~L~~n~l~~~ip----~~~~~~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~-----~--n~l~~~i 334 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIP----DFLSGACDTLTGLDLSGNH---FYGAVPPFFGSCSLLESLALS-----S--NNFSGEL 334 (768)
T ss_dssp TTCCEEECCSSEEEESCC----CCSCTTCTTCSEEECCSSE---EEECCCGGGGGCTTCCEEECC-----S--SEEEEEC
T ss_pred CCCCEEECcCCccCCccC----HHHHhhcCcCCEEECcCCc---CCCccchHHhcCCCccEEECC-----C--CcccCcC
Confidence 56777777777665 444 33334 4888888888887 444567778888888888888 5 4444 66
Q ss_pred ccc-cccCCCCcEEEccCCCCcc-ccchHHhccC-CCCEEecCCCCCCcccCccccc--cccccEEecCCCccccccccC
Q 048084 616 PTN-IEKLLHLKYLNLFCQREIE-KLPETLCELY-NLERLNVSGCRNLRELPQGIGK--LRKLMYLYNDRTESLRYLPVG 690 (967)
Q Consensus 616 p~~-i~~l~~L~~L~Ls~~~~i~-~lp~~~~~l~-~L~~L~L~~~~~l~~lp~~l~~--l~~L~~L~l~~~~~~~~~p~~ 690 (967)
|.. ++++++|++|+|++|. +. .+|..+.+++ +|++|++++|.....+|..+.. +++|++|++++|.....+|..
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 413 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred CHHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH
Confidence 755 7888888888888887 54 7787788777 8888888888754566666665 778888888888555567777
Q ss_pred CCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccc
Q 048084 691 IEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQA 770 (967)
Q Consensus 691 ~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 770 (967)
+..+++|+.|++..+......+ ..+..++.|+.|.+.+... ....+..+..+++|+.|++++|.+...
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~n~l----~~~~p~~~~~l~~L~~L~L~~N~l~~~----- 481 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIP---SSLGSLSKLRDLKLWLNML----EGEIPQELMYVKTLETLILDFNDLTGE----- 481 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCC---GGGGGCTTCCEEECCSSCC----CSCCCGGGGGCTTCCEEECCSSCCCSC-----
T ss_pred HhcCCCCCEEECcCCcccCccc---HHHhcCCCCCEEECCCCcc----cCcCCHHHcCCCCceEEEecCCcccCc-----
Confidence 8888888888777665543222 2344555666666554322 112334566778888888888754322
Q ss_pred cCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeecc
Q 048084 771 GRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQG 849 (967)
Q Consensus 771 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 849 (967)
.+..+..+++|+.|+|++|.+.. ..|.++..+++|+.|+|++|.+...+|. ++.+++|+.|++++
T Consensus 482 ------------~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 482 ------------IPSGLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp ------------CCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ------------CCHHHhcCCCCCEEEccCCccCC--cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 23456667788888888887764 3377888888888888888877666665 77788888888887
Q ss_pred ccCceEeCccccCCCCC----------------------------------------------------------CCCcc
Q 048084 850 MQSVKRVGNEFLGVESD----------------------------------------------------------TDGSS 871 (967)
Q Consensus 850 c~~l~~~~~~~~~~~~~----------------------------------------------------------~~~~~ 871 (967)
|+....+|..+...... .....
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 65332333222110000 00011
Q ss_pred ccccccccccccccc-------------cccccccc-----ccccccccccCcccceeeeccCccCcCCCcCCCCCCCcC
Q 048084 872 VIAFPKLKLLRFDNM-------------KELEELDF-----RTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQ 933 (967)
Q Consensus 872 ~~~~~~L~~L~l~~~-------------~~L~~l~~-----~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 933 (967)
+..+++|+.|+++++ ++|+.+.+ ++..|..+..+++|+.|++++|.....+|..+..+++|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 223455566655442 23333333 344666788899999999999965558898888899999
Q ss_pred eEEEcCCcc-----------------------hh----hhhcCCCCCCCcccCCCCccc
Q 048084 934 ELWISGCPI-----------------------LK----ERCRKETGEDWPNIRHIPKIS 965 (967)
Q Consensus 934 ~L~l~~c~~-----------------------l~----~~~~~~~~~~~~~i~~ip~~~ 965 (967)
.|++++|+. +. ..|....+++|++|+|+|.+.
T Consensus 708 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred EEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 999987742 11 247789999999999999763
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=5.6e-27 Score=278.03 Aligned_cols=345 Identities=15% Similarity=0.174 Sum_probs=264.2
Q ss_pred ccEEEEEEEecCCCC------------------CCCccccccc--CCCCccEEEeccCCccchhccchhhhccCCcceEE
Q 048084 539 KKILHLMLALDRGAL------------------IPMPIWDNVK--GLRGLRSLLVESNEYSWSRVILPQLFDKLICLRAL 598 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~------------------~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 598 (967)
..++.+.+.++.+.. +| ..+. ++++|++|++++|. +...+|..|.++++|++|
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip----~~l~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----EDLKWDNLKDLTDVEVYNCP---NLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT----SCCCGGGCTTCCEEEEECCT---TCSSCCTTTTTCSSCCEE
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCc----hhhhhcccCCCCEEEecCCc---CCccChHHHhcCCCCCEE
Confidence 689999999999876 66 5667 99999999999998 334578889999999999
Q ss_pred EecccCccccccc-cc--ccccccccC------CCCcEEEccCCCCccccch--HHhccCCCCEEecCCCCCCc-ccCcc
Q 048084 599 KLEVRGWRSCENY-IK--EIPTNIEKL------LHLKYLNLFCQREIEKLPE--TLCELYNLERLNVSGCRNLR-ELPQG 666 (967)
Q Consensus 599 ~L~~~~~~~c~~~-~~--~lp~~i~~l------~~L~~L~Ls~~~~i~~lp~--~~~~l~~L~~L~L~~~~~l~-~lp~~ 666 (967)
+|+ + |. +. .+|..++++ ++|++|+|++|. +..+|. .+.++++|++|++++|. ++ .+| .
T Consensus 279 ~Ls-----~--n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~ 348 (636)
T 4eco_A 279 NVA-----C--NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP-A 348 (636)
T ss_dssp ECT-----T--CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEEECC-C
T ss_pred ECc-----C--CCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-Cccchh-h
Confidence 999 6 43 54 588888877 999999999999 889998 89999999999999999 65 999 9
Q ss_pred ccccccccEEecCCCccccccccCCCCCCC-CCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhh
Q 048084 667 IGKLRKLMYLYNDRTESLRYLPVGIEELIR-LRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAE 745 (967)
Q Consensus 667 l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~ 745 (967)
+..+++|++|++++| .+..+|..+..+++ |+.|++..+.... .+..+.. ..++.|+.|.+.+... ....+..
T Consensus 349 ~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~-~~l~~L~~L~Ls~N~l----~~~~p~~ 421 (636)
T 4eco_A 349 FGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDA-KSVSVMSAIDFSYNEI----GSVDGKN 421 (636)
T ss_dssp CEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSS-CCSCCCT-TCSSCEEEEECCSSCT----TTTTTCS
T ss_pred hCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcc-cchhhhh-cccCccCEEECcCCcC----CCcchhh
Confidence 999999999999999 66699999999999 9999888776553 1211111 1123455555554221 1222233
Q ss_pred cc-------CCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcc--
Q 048084 746 LE-------KKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSL-- 816 (967)
Q Consensus 746 l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l-- 816 (967)
+. .+.+|+.|++++|.+..... ..+..+++|++|+|++|.+.. +|+..+...
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-----------------~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~ 482 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPK-----------------ELFSTGSPLSSINLMGNMLTE--IPKNSLKDENE 482 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCT-----------------HHHHTTCCCSEEECCSSCCSB--CCSSSSEETTE
T ss_pred hcccccccccCCCCCEEECcCCccCcCCH-----------------HHHccCCCCCEEECCCCCCCC--cCHHHhccccc
Confidence 44 66799999999996442111 123457899999999999886 755554433
Q ss_pred -----cccceeEecCccCCCCCCC-CC--CCCCccceeeccccCceEeCccccCCCCCCCCccccccccccccccccccc
Q 048084 817 -----TNLRDLSLIMWRNREHLPP-LG--KLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKE 888 (967)
Q Consensus 817 -----~~L~~L~L~~~~~~~~l~~-l~--~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 888 (967)
++|+.|+|++|.+. .+|. +. .+++|+.|+|++|. ++.++. .+..+++|+.|+++++..
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~------------~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPT------------QPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCC------------GGGGCSSCCEEECCSCBC
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcCh------------hhhcCCCCCEEECCCCcc
Confidence 39999999999766 6665 55 89999999999954 222332 234789999999987664
Q ss_pred ccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCCcch
Q 048084 889 LEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGCPIL 943 (967)
Q Consensus 889 L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 943 (967)
+..-.+.+..|..+..+++|+.|++++| .++.+|..+. ++|+.|++++||..
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCTTC
T ss_pred cccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCCCc
Confidence 4444455556667888999999999999 5699998765 89999999999753
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.9e-26 Score=277.02 Aligned_cols=349 Identities=15% Similarity=0.172 Sum_probs=258.4
Q ss_pred CcccEEEEEEEecCCCC------------------CCCccccccc--CCCCccEEEeccCCccchhccchhhhccCCcce
Q 048084 537 GEKKILHLMLALDRGAL------------------IPMPIWDNVK--GLRGLRSLLVESNEYSWSRVILPQLFDKLICLR 596 (967)
Q Consensus 537 ~~~~~~~l~~~~~~~~~------------------~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~ 596 (967)
....++.+.+.++.+.. +| ..+. ++++|+.|++++|. +...+|..|.++++|+
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP----~~l~f~~L~~L~~L~Ls~N~---l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN----EELSWSNLKDLTDVELYNCP---NMTQLPDFLYDLPELQ 518 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT----SCCCGGGCTTCCEEEEESCT---TCCSCCGGGGGCSSCC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCC----hhhhhccCCCCCEEECcCCC---CCccChHHHhCCCCCC
Confidence 33688999999998876 55 5555 99999999999997 3345788899999999
Q ss_pred EEEecccCccccccc-cc--ccccccccCC-------CCcEEEccCCCCccccch--HHhccCCCCEEecCCCCCCcccC
Q 048084 597 ALKLEVRGWRSCENY-IK--EIPTNIEKLL-------HLKYLNLFCQREIEKLPE--TLCELYNLERLNVSGCRNLRELP 664 (967)
Q Consensus 597 ~L~L~~~~~~~c~~~-~~--~lp~~i~~l~-------~L~~L~Ls~~~~i~~lp~--~~~~l~~L~~L~L~~~~~l~~lp 664 (967)
+|+|+ + |. +. .+|..++++. +|++|+|++|. +..+|. .+.++++|++|+|++|. ++.+|
T Consensus 519 ~L~Ls-----~--N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp 589 (876)
T 4ecn_A 519 SLNIA-----C--NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE 589 (876)
T ss_dssp EEECT-----T--CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC
T ss_pred EEECc-----C--CCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch
Confidence 99999 6 43 44 4777776665 99999999999 889998 89999999999999998 67999
Q ss_pred ccccccccccEEecCCCccccccccCCCCCCC-CCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHH
Q 048084 665 QGIGKLRKLMYLYNDRTESLRYLPVGIEELIR-LRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARR 743 (967)
Q Consensus 665 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~ 743 (967)
.+..+++|++|++++| .+..+|..+..+++ |+.|++..+.... .+..+..+ ..+.|+.|.+.+......... ..
T Consensus 590 -~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~-~~~~L~~L~Ls~N~l~g~ip~-l~ 664 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK-SVYVMGSVDFSYNKIGSEGRN-IS 664 (876)
T ss_dssp -CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTT-CSSCEEEEECCSSCTTTTSSS-CS
T ss_pred -hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCCCCc-Cchhhhcc-ccCCCCEEECcCCcCCCcccc-ch
Confidence 8999999999999999 56689988999998 9999888776553 12111111 112255555544221110000 00
Q ss_pred hhcc--CCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhh-CCCCCCCCeEEEeeeCCCCCCCCCchhh------
Q 048084 744 AELE--KKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEA-LGPPSNLKELRIDEYGGRRNVVPINWIM------ 814 (967)
Q Consensus 744 ~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~~~~~~~l~------ 814 (967)
..+. .+.+|+.|++++|.+.. ++.. +..+++|+.|+|++|.+.. +|+..+.
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~~------------------lp~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l 724 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQK------------------FPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNY 724 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCCS------------------CCHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCC
T ss_pred hhhccccCCCcCEEEccCCcCCc------------------cCHHHHccCCCCCEEECCCCcCCc--cChHHhccccccc
Confidence 1111 34589999999985442 2222 2367899999999998886 7443333
Q ss_pred -cccccceeEecCccCCCCCCC-CC--CCCCccceeeccccCceEeCccccCCCCCCCCccccccccccccccccccccc
Q 048084 815 -SLTNLRDLSLIMWRNREHLPP-LG--KLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELE 890 (967)
Q Consensus 815 -~l~~L~~L~L~~~~~~~~l~~-l~--~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 890 (967)
++++|+.|+|++|.+. .+|. +. .+++|+.|+|++|. ++.++. .+..+++|+.|+|++++.+.
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~------------~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPT------------QPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCC------------GGGGCTTCCEEECCCCBCTT
T ss_pred cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccch------------hhhcCCCCCEEECCCCCCcc
Confidence 3449999999999666 5665 55 89999999999854 222222 24478999999999876555
Q ss_pred ccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCCcch
Q 048084 891 ELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGCPIL 943 (967)
Q Consensus 891 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 943 (967)
.-.+.+..|..+..+++|+.|+|++| .+..+|..+. ++|+.|+|++|+..
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSCTTC
T ss_pred cccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCCCCC
Confidence 55555666778889999999999999 5699998765 79999999999863
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.2e-25 Score=273.22 Aligned_cols=317 Identities=19% Similarity=0.097 Sum_probs=165.7
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcc------------
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWR------------ 606 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~------------ 606 (967)
..++++.+.++.+.... ..+.++++|++|++++|. +....|..|..+++|++|+|+.+.+.
T Consensus 200 ~~L~~L~Ls~n~l~~~~----~~l~~l~~L~~L~Ls~n~---l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 272 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGI----PFLGDCSALQHLDISGNK---LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272 (768)
T ss_dssp TTCCEEECCSSCCCSCC----CBCTTCCSCCEEECCSSC---CCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred CcCCEEECcCCcCCCCC----cccccCCCCCEEECcCCc---CCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence 45666666666654422 125666666666666665 33334555666666666666622211
Q ss_pred -----ccccccc-ccccccccC-CCCcEEEccCCCCcc-ccchHHhccCCCCEEecCCCCCCcccCcc-ccccccccEEe
Q 048084 607 -----SCENYIK-EIPTNIEKL-LHLKYLNLFCQREIE-KLPETLCELYNLERLNVSGCRNLRELPQG-IGKLRKLMYLY 677 (967)
Q Consensus 607 -----~c~~~~~-~lp~~i~~l-~~L~~L~Ls~~~~i~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~ 677 (967)
+ +.+. .+|..++.+ ++|++|+|++|. +. .+|..+.++++|++|++++|.....+|.. +.++++|++|+
T Consensus 273 ~L~L~~--n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 273 YLSLAE--NKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp EEECCS--SEEEESCCCCSCTTCTTCSEEECCSSE-EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred EEECcC--CccCCccCHHHHhhcCcCCEEECcCCc-CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 2 1122 344444443 556666666655 33 45555566666666666665522355544 55566666666
Q ss_pred cCCCccccccccCCCCCC-CCCcCCceEecCcCCCccCcccccc--CCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCc
Q 048084 678 NDRTESLRYLPVGIEELI-RLRGVTKFVVGGGYDRACSLGSLKK--LNLLRECWICGLGGVSDAGEARRAELEKKKNLFK 754 (967)
Q Consensus 678 l~~~~~~~~~p~~~~~l~-~L~~L~~~~~~~~~~~~~~l~~l~~--L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~ 754 (967)
+++|.....+|..+..++ +|+.|++..+....... ..+.. ++.|+.|.+.+.. .....+..+..+++|+.
T Consensus 350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~---~~~~~~~~~~L~~L~L~~n~----l~~~~p~~l~~l~~L~~ 422 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL---PNLCQNPKNTLQELYLQNNG----FTGKIPPTLSNCSELVS 422 (768)
T ss_dssp CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC---TTTTCSTTCCCCEEECCSSE----EEEECCGGGGGCTTCCE
T ss_pred CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC---hhhhhcccCCccEEECCCCc----cccccCHHHhcCCCCCE
Confidence 665533334555554444 45544444332211000 00101 2223333322211 00112223344444444
Q ss_pred EEEEeecCCCCCcccccCC------CCch-hhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCc
Q 048084 755 LGLHFCHSRDGDEEQAGRR------ENEE-DEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMW 827 (967)
Q Consensus 755 L~l~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 827 (967)
|++++|.+....+...... .... .....++..+..+++|++|+|++|.+.. ..|.++..+++|+.|+|++|
T Consensus 423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSS
T ss_pred EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC--cCCHHHhcCCCCCEEEccCC
Confidence 4444443322111100000 0000 0001234556677889999999888875 34788889999999999999
Q ss_pred cCCCCCCC-CCCCCCccceeeccccCceEeCccccCCCCCCCCccccccccccccccccc
Q 048084 828 RNREHLPP-LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNM 886 (967)
Q Consensus 828 ~~~~~l~~-l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 886 (967)
.+...+|. ++.+++|++|+|++|.....++.. +..+++|+.|++++|
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~------------l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE------------LGDCRSLIWLDLNTN 548 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG------------GGGCTTCCEEECCSS
T ss_pred ccCCcCChHHhcCCCCCEEECCCCcccCcCCHH------------HcCCCCCCEEECCCC
Confidence 87777776 888999999999987644444433 235666777766654
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.7e-25 Score=266.13 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=106.7
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-cc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PT 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~ 617 (967)
..++++.+.++.+..++. ..|.++++|++|++++|. +..+.|..|.++++|++|+|+ + |.+..+ |.
T Consensus 32 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls-----~--n~l~~~~p~ 98 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS---YSFSNFSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILT-----G--NPIQSFSPG 98 (606)
T ss_dssp TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-----T--CCCCCCCTT
T ss_pred CCcCEEECCCCCcCEeCh---hhccCCccCcEEeCCCCc---ccccCHHHhhchhhcCEeECC-----C--CcccccChh
Confidence 678999999988877663 467889999999999987 455567788999999999998 6 556666 77
Q ss_pred ccccCCCCcEEEccCCCCccccc-hHHhccCCCCEEecCCCCCCc--ccCccccccccccEEecCCCc
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLP-ETLCELYNLERLNVSGCRNLR--ELPQGIGKLRKLMYLYNDRTE 682 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~l~~~~ 682 (967)
.++++++|++|+|++|. +..+| ..++++++|++|++++|. +. .+|..++++++|++|++++|.
T Consensus 99 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp SSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred hcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc
Confidence 88899999999999998 77776 568889999999999988 54 578888899999999998884
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=4e-25 Score=257.46 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=108.8
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++++.+.++.+..++. ..|.++++|++|++++|. +..+.|..|.++++|++|+|+ + |.+..+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-----~--N~l~~lp~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT---SDILSLSKLRILIISHNR---IQYLDISVFKFNQELEYLDLS-----H--NKLVKISCH 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCH---HHHTTCTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECC-----S--SCCCEEECC
T ss_pred ccccEEECCCCcccccCh---hhccccccccEEecCCCc---cCCcChHHhhcccCCCEEecC-----C--CceeecCcc
Confidence 689999999998877652 568899999999999998 555568889999999999999 7 667788876
Q ss_pred cccCCCCcEEEccCCCCccc--cchHHhccCCCCEEecCCCCCCcccCccccccccc--cEEecCCCcc--ccccccCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEK--LPETLCELYNLERLNVSGCRNLRELPQGIGKLRKL--MYLYNDRTES--LRYLPVGIE 692 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~--lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L--~~L~l~~~~~--~~~~p~~~~ 692 (967)
.+++|++|+|++|. +.. +|..+.++++|++|++++|. ++. ..+..+++| ++|++++|.. ....|..+.
T Consensus 88 --~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp --CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred --ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccc
Confidence 89999999999998 765 57889999999999999988 544 356777777 8999888854 333444443
Q ss_pred C
Q 048084 693 E 693 (967)
Q Consensus 693 ~ 693 (967)
.
T Consensus 162 ~ 162 (520)
T 2z7x_B 162 D 162 (520)
T ss_dssp T
T ss_pred c
Confidence 3
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=9.7e-26 Score=271.00 Aligned_cols=296 Identities=13% Similarity=0.133 Sum_probs=168.5
Q ss_pred cccccc--cCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCc--ccCccccccc-------cccEEecCCCcc
Q 048084 615 IPTNIE--KLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLR--ELPQGIGKLR-------KLMYLYNDRTES 683 (967)
Q Consensus 615 lp~~i~--~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~--~lp~~l~~l~-------~L~~L~l~~~~~ 683 (967)
+|..++ ++++|++|+|++|.....+|..+.++++|++|+|++|..++ .+|..++.++ +|++|++++| .
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-N 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-C
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-c
Confidence 555555 56666666666655444555556666666666666654232 3555444444 5666666655 3
Q ss_pred cccccc--CCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCC-CCcEEEEee
Q 048084 684 LRYLPV--GIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKN-LFKLGLHFC 760 (967)
Q Consensus 684 ~~~~p~--~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~ 760 (967)
+..+|. .++.+++|+.|++..+.... +..+..++.|+.|.+.+.... ..+..+..+++ |+.|++++|
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~-----lp~~~~L~~L~~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVRH-----LEAFGTNVKLTDLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCCB-----CCCCCTTSEESEEECCSSCCS-----CCCTTSCEECTTCCEEECCSS
T ss_pred CCccCChhhhhcCCCCCEEECCCCCccc-----chhhcCCCcceEEECcCCccc-----cchHHHhhccccCCEEECcCC
Confidence 335555 55555555555554443321 113333444444444332111 11223444444 555555555
Q ss_pred cCCCCCcccccC-------CCCchhhHH----HHhhhCC--CCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCc
Q 048084 761 HSRDGDEEQAGR-------RENEEDEDE----RLLEALG--PPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMW 827 (967)
Q Consensus 761 ~~~~~~~~~~~~-------~~~~~~~~~----~~~~~l~--~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 827 (967)
.+......+... ......... .++..+. .+++|+.|+|++|.+.. +|+..+..+++|+.|+|++|
T Consensus 630 ~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNN 707 (876)
T ss_dssp CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSC
T ss_pred CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCC
Confidence 433211100000 000000000 0111111 34589999999998886 74444558899999999999
Q ss_pred cCCCCCCC-CC--------CCCCccceeeccccCceEeCccccCCCCCCCCccccccccccccccccccccccccccccc
Q 048084 828 RNREHLPP-LG--------KLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAI 898 (967)
Q Consensus 828 ~~~~~l~~-l~--------~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~ 898 (967)
.+. .+|. +. ++++|+.|+|++|. ++.++..+.. ..+++|+.|+|++| .++.+
T Consensus 708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~----------~~l~~L~~L~Ls~N-~L~~l------ 768 (876)
T 4ecn_A 708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRA----------TTLPYLSNMDVSYN-CFSSF------ 768 (876)
T ss_dssp CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGST----------TTCTTCCEEECCSS-CCSSC------
T ss_pred cCC-ccChHHhccccccccccCCccEEECCCCC-CccchHHhhh----------ccCCCcCEEEeCCC-CCCcc------
Confidence 665 4554 22 23489999999863 4444432220 16899999999987 45543
Q ss_pred ccccccCcccceeeecc------CccCcCCCcCCCCCCCcCeEEEcCCcc
Q 048084 899 KGEIIIMPRLSSLQILR------CLKLKALPDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 899 ~~~~~~l~~L~~L~l~~------c~~l~~lp~~~~~l~~L~~L~l~~c~~ 942 (967)
|..+..+++|+.|+|++ |.....+|..+..+++|+.|+|++|..
T Consensus 769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 33667899999999977 544567888899999999999999976
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2.9e-25 Score=263.98 Aligned_cols=353 Identities=17% Similarity=0.056 Sum_probs=226.8
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-cc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PT 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~ 617 (967)
..++++.+.++.+..++. ..|.++++|++|++++|. +..+.|..|.++++|++|+|+ + |.+..+ |.
T Consensus 33 ~~l~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-----~--n~l~~~~~~ 99 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN---TTFSRLINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLT-----A--NPLIFMAET 99 (606)
T ss_dssp TTCCEEECTTCCCSEECT---TTSTTCTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECT-----T--CCCSEECTT
T ss_pred CcCcEEEccCCccCcCCh---hHhccCccceEEECCCCc---cceeChhhccCccccCeeeCC-----C--CcccccChh
Confidence 679999999999987753 578999999999999998 555678889999999999999 6 556555 67
Q ss_pred ccccCCCCcEEEccCCCCcccc-chHHhccCCCCEEecCCCCCCcccC-ccccccccccEEecCCCccccccccCCCCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKL-PETLCELYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRYLPVGIEELI 695 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 695 (967)
.++++++|++|++++|. +..+ |..+.++++|++|++++|. +..++ ..+..+++|++|++++|......|..++.++
T Consensus 100 ~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred hhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 89999999999999999 8877 5678999999999999998 66542 3455599999999999943333355677888
Q ss_pred CCC--cCCceEecCcCCCccCccc--c---------------ccCC-------------------------------CCC
Q 048084 696 RLR--GVTKFVVGGGYDRACSLGS--L---------------KKLN-------------------------------LLR 725 (967)
Q Consensus 696 ~L~--~L~~~~~~~~~~~~~~l~~--l---------------~~L~-------------------------------~L~ 725 (967)
+|+ .|++..+.........+.. + ..+. .|+
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 887 4444443322211111110 0 0000 111
Q ss_pred CeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCC
Q 048084 726 ECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRR 805 (967)
Q Consensus 726 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 805 (967)
.+.+.+. .........+..+++|+.|++++|.+. .++..+..+++|++|++++|.+..
T Consensus 258 ~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 258 SINLQKH----YFFNISSNTFHCFSGLQELDLTATHLS------------------ELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp EEECTTC----CCSSCCTTTTTTCTTCSEEECTTSCCS------------------CCCSSCCSCTTCCEEECTTCCCSB
T ss_pred EEEeecC----ccCccCHHHhccccCCCEEeccCCccC------------------CCChhhcccccCCEEECccCCcCc
Confidence 1111111 111122234566777888888777432 234455666777777777777665
Q ss_pred CCCCCchhhcccccceeEecCccCCCCCCC--CCCCCCccceeeccccCceEe--CccccCCCCCCCCcccccccccccc
Q 048084 806 NVVPINWIMSLTNLRDLSLIMWRNREHLPP--LGKLPSLEDLKIQGMQSVKRV--GNEFLGVESDTDGSSVIAFPKLKLL 881 (967)
Q Consensus 806 ~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~c~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~L 881 (967)
.++..+..+++|+.|++++|.....++. +..+++|++|+++++...... +.. +..+++|+.|
T Consensus 316 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------~~~l~~L~~L 381 (606)
T 3t6q_A 316 --LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ------------LRNLSHLQSL 381 (606)
T ss_dssp --GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT------------TTTCTTCCEE
T ss_pred --CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh------------cccCCCCCEE
Confidence 4455666777777777777765544443 666777777777764422111 111 1234444444
Q ss_pred ccccc-------------ccccccccccc-----c-ccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCCcc
Q 048084 882 RFDNM-------------KELEELDFRTA-----I-KGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 882 ~l~~~-------------~~L~~l~~~~~-----~-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 942 (967)
+++++ ++|+.+.++++ . +..+..+++|+.|++++|......|..+..+++|++|++++|+.
T Consensus 382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp ECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred ECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 44332 22222222211 1 12255788888888888854444566777888899999988875
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=4.5e-25 Score=242.60 Aligned_cols=302 Identities=19% Similarity=0.203 Sum_probs=191.6
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
+.++++.+.++.+..++ .+..+++|++|++++|.+ ..+ +. +..+++|++|+++ + +.+..++ .
T Consensus 44 ~~L~~L~l~~~~i~~~~-----~~~~~~~L~~L~l~~n~i---~~~-~~-~~~l~~L~~L~L~-----~--n~i~~~~-~ 105 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ-----GIEYLTNLEYLNLNGNQI---TDI-SP-LSNLVKLTNLYIG-----T--NKITDIS-A 105 (347)
T ss_dssp TTCSEEECCSSCCCCCT-----TGGGCTTCCEEECCSSCC---CCC-GG-GTTCTTCCEEECC-----S--SCCCCCG-G
T ss_pred ccccEEEEeCCccccch-----hhhhcCCccEEEccCCcc---ccc-hh-hhcCCcCCEEEcc-----C--CcccCch-H
Confidence 35566666666655543 245566666666666652 221 22 5666666666666 4 3444443 3
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLR 698 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 698 (967)
+.++++|++|++++|. +..+|. +..+++|++|++++|..+..++ .+..+++|++|++++| .+..++. +..+++|+
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES-KVKDVTP-IANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCS
T ss_pred HcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCC-CcCCchh-hccCCCCC
Confidence 6666666666666666 666655 6666666666666665344433 3666666666666666 2333322 33444444
Q ss_pred cCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchh
Q 048084 699 GVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEED 778 (967)
Q Consensus 699 ~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 778 (967)
. |.+.+...... ..+..+++|+.|++++|.+...
T Consensus 181 ~---------------------------L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------------- 214 (347)
T 4fmz_A 181 S---------------------------LSLNYNQIEDI------SPLASLTSLHYFTAYVNQITDI------------- 214 (347)
T ss_dssp E---------------------------EECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC-------------
T ss_pred E---------------------------EEccCCccccc------ccccCCCccceeecccCCCCCC-------------
Confidence 4 33333211100 1155677888888888743321
Q ss_pred hHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCc
Q 048084 779 EDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGN 858 (967)
Q Consensus 779 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~ 858 (967)
..+..+++|++|++++|.+.. . +. +..+++|+.|++++|.+ +.++.+..+++|+.|++++|. ++.++
T Consensus 215 ------~~~~~~~~L~~L~l~~n~l~~--~-~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~-l~~~~- 281 (347)
T 4fmz_A 215 ------TPVANMTRLNSLKIGNNKITD--L-SP-LANLSQLTWLEIGTNQI-SDINAVKDLTKLKMLNVGSNQ-ISDIS- 281 (347)
T ss_dssp ------GGGGGCTTCCEEECCSSCCCC--C-GG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC-CCCCG-
T ss_pred ------chhhcCCcCCEEEccCCccCC--C-cc-hhcCCCCCEEECCCCcc-CCChhHhcCCCcCEEEccCCc-cCCCh-
Confidence 115567899999999998877 5 33 78899999999999954 445678889999999999863 33221
Q ss_pred cccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEc
Q 048084 859 EFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWIS 938 (967)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 938 (967)
.+..+++|+.|++++|. +... .+..+..+++|+.|++++| .++.++. +..+++|++|+++
T Consensus 282 ------------~~~~l~~L~~L~L~~n~-l~~~-----~~~~l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 282 ------------VLNNLSQLNSLFLNNNQ-LGNE-----DMEVIGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFA 341 (347)
T ss_dssp ------------GGGGCTTCSEEECCSSC-CCGG-----GHHHHHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSS
T ss_pred ------------hhcCCCCCCEEECcCCc-CCCc-----ChhHhhccccCCEEEccCC-ccccccC-hhhhhccceeehh
Confidence 13478999999999984 4332 2335667999999999999 4676665 7779999999999
Q ss_pred CCcc
Q 048084 939 GCPI 942 (967)
Q Consensus 939 ~c~~ 942 (967)
+|+.
T Consensus 342 ~N~i 345 (347)
T 4fmz_A 342 NQVI 345 (347)
T ss_dssp CC--
T ss_pred hhcc
Confidence 9974
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=4e-26 Score=270.73 Aligned_cols=320 Identities=13% Similarity=0.139 Sum_probs=191.0
Q ss_pred chhhhccCCcceEEEecccCcccccccccc------------------cccccc--cCCCCcEEEccCCCCccccchHHh
Q 048084 585 LPQLFDKLICLRALKLEVRGWRSCENYIKE------------------IPTNIE--KLLHLKYLNLFCQREIEKLPETLC 644 (967)
Q Consensus 585 ~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~------------------lp~~i~--~l~~L~~L~Ls~~~~i~~lp~~~~ 644 (967)
+|..|.++++|++|+|+ + +.+.. +|..++ ++++|++|+|++|.....+|..+.
T Consensus 198 ip~~l~~l~~L~~L~Ls-----~--n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMG-----N--SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp ECGGGGGCTTCCEEEEE-----S--CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCHHHhcccCCCEEECc-----C--CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 45567777777777777 4 33444 677776 777777777777764556777777
Q ss_pred ccCCCCEEecCCCCCCc--ccCcccccc------ccccEEecCCCcccccccc--CCCCCCCCCcCCceEecCcCCCccC
Q 048084 645 ELYNLERLNVSGCRNLR--ELPQGIGKL------RKLMYLYNDRTESLRYLPV--GIEELIRLRGVTKFVVGGGYDRACS 714 (967)
Q Consensus 645 ~l~~L~~L~L~~~~~l~--~lp~~l~~l------~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~~~~~~~~~~~~~~ 714 (967)
++++|++|++++|..++ .+|..++.+ ++|++|++++| .+..+|. .++.+++|+.|++..+......+
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-- 347 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-- 347 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh--
Confidence 77777777777776233 467666665 77777777777 4446666 67777777777666555442111
Q ss_pred ccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCC-CCcEEEEeecCCCCCcccccC-------CCCch-hhHHHHhh
Q 048084 715 LGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKN-LFKLGLHFCHSRDGDEEQAGR-------RENEE-DEDERLLE 785 (967)
Q Consensus 715 l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~ 785 (967)
.+..++.|+.|.+.+... . ..+..+..+++ |+.|++++|.+.......... ..... ......+.
T Consensus 348 --~~~~l~~L~~L~L~~N~l----~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 348 --AFGSEIKLASLNLAYNQI----T-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp --CCEEEEEESEEECCSSEE----E-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred --hhCCCCCCCEEECCCCcc----c-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 233333344444333111 0 12233445555 666666666443211100000 00000 00111223
Q ss_pred hCC-------CCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC--CC-------CCCCccceeecc
Q 048084 786 ALG-------PPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP--LG-------KLPSLEDLKIQG 849 (967)
Q Consensus 786 ~l~-------~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~--l~-------~l~~L~~L~L~~ 849 (967)
.+. .+++|++|+|++|.+.. +|+..+..+++|+.|+|++|.+. .+|. +. .+++|+.|+|++
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred hhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcC
Confidence 333 55678888888887776 64455556788888888888655 4544 22 223788888887
Q ss_pred ccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeec------cCccCcCCC
Q 048084 850 MQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQIL------RCLKLKALP 923 (967)
Q Consensus 850 c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~------~c~~l~~lp 923 (967)
|. ++.++..+.. ..+++|+.|+++++ .++.+ |..+..+++|+.|+++ +|.....+|
T Consensus 498 N~-l~~lp~~~~~----------~~l~~L~~L~Ls~N-~l~~i------p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 498 NK-LTKLSDDFRA----------TTLPYLVGIDLSYN-SFSKF------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp SC-CCBCCGGGST----------TTCTTCCEEECCSS-CCSSC------CCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred Cc-CCccChhhhh----------ccCCCcCEEECCCC-CCCCc------ChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 53 3333322210 16788888888887 34433 3466788999999995 454566788
Q ss_pred cCCCCCCCcCeEEEcCCcc
Q 048084 924 DHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 924 ~~~~~l~~L~~L~l~~c~~ 942 (967)
..+..+++|++|++++|..
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC
T ss_pred HHHhcCCCCCEEECCCCcC
Confidence 8888899999999999975
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1.1e-24 Score=255.88 Aligned_cols=377 Identities=17% Similarity=0.189 Sum_probs=230.8
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++++.+.++.+..++. ..|.++++|++|++++|. +..+.|..|.++++|++|+|+ + |.+..+|..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-----~--n~l~~~~~~ 92 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH---GDLRACANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLS-----D--NHLSSLSSS 92 (549)
T ss_dssp TTCCEEECCSSCCCEECS---STTSSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-----T--SCCCSCCHH
T ss_pred CCccEEECcCCccCccCh---hhhhcCCcccEEECCCCC---cCccChhhccccccCCEEECC-----C--CccCccCHH
Confidence 589999999998876642 568899999999999998 445577789999999999999 6 667777654
Q ss_pred -cccCCCCcEEEccCCCCccc--cchHHhccCCCCEEecCCCCCCcccC-ccccccccccEEecCCCccccccccCCCCC
Q 048084 619 -IEKLLHLKYLNLFCQREIEK--LPETLCELYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRYLPVGIEEL 694 (967)
Q Consensus 619 -i~~l~~L~~L~Ls~~~~i~~--lp~~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l 694 (967)
++++++|++|+|++|. +.. .|..+.++++|++|++++|..++.+| ..+.++++|++|++++|......|..++.+
T Consensus 93 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 8999999999999998 774 46678899999999999998677776 468899999999999985555567777666
Q ss_pred CCCCcCCceEec------------------------CcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccC--
Q 048084 695 IRLRGVTKFVVG------------------------GGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEK-- 748 (967)
Q Consensus 695 ~~L~~L~~~~~~------------------------~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~-- 748 (967)
++|+.|++..+. ..........-...++.|+.|.+.+..............+..
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 655555443322 111000000000011112222111100000000000000011
Q ss_pred ---------------------------------------------------------CCCCCcEEEEeecCCCCCcccc-
Q 048084 749 ---------------------------------------------------------KKNLFKLGLHFCHSRDGDEEQA- 770 (967)
Q Consensus 749 ---------------------------------------------------------~~~L~~L~l~~~~~~~~~~~~~- 770 (967)
..+|+.|++++|.+........
T Consensus 252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~ 331 (549)
T 2z81_A 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331 (549)
T ss_dssp TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHH
T ss_pred cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHh
Confidence 1233333333333221111100
Q ss_pred --cC---CCCch-hhHHHH---hhhCCCCCCCCeEEEeeeCCCCCCCCC--chhhcccccceeEecCccCCCCCCC-CCC
Q 048084 771 --GR---RENEE-DEDERL---LEALGPPSNLKELRIDEYGGRRNVVPI--NWIMSLTNLRDLSLIMWRNREHLPP-LGK 838 (967)
Q Consensus 771 --~~---~~~~~-~~~~~~---~~~l~~~~~L~~L~L~~~~~~~~~~~~--~~l~~l~~L~~L~L~~~~~~~~l~~-l~~ 838 (967)
.. ..... ...... ...+..+++|++|+|++|.+.. +++ ..+..+++|+.|++++|.+. .+|. +..
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 408 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCc-cCChhhcc
Confidence 00 00000 001111 2335677889999998888766 422 34778899999999999655 4554 778
Q ss_pred CCCccceeeccccCceEeCccccC-C-----CCCCCCcccccccccccccccccccccccccccccccccccCcccceee
Q 048084 839 LPSLEDLKIQGMQSVKRVGNEFLG-V-----ESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQ 912 (967)
Q Consensus 839 l~~L~~L~L~~c~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~ 912 (967)
+++|++|++++|. ++.++..+.. . ..-........+++|+.|+++++ +++.++ ....+++|+.|+
T Consensus 409 ~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip-------~~~~l~~L~~L~ 479 (549)
T 2z81_A 409 PEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLP-------DASLFPVLLVMK 479 (549)
T ss_dssp CTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCC-------CGGGCTTCCEEE
T ss_pred cccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCC-------CcccCccCCEEe
Confidence 8899999998864 3332221100 0 00000001125677777777776 455443 134689999999
Q ss_pred eccCccCcCCCc-CCCCCCCcCeEEEcCCcc
Q 048084 913 ILRCLKLKALPD-HLLQKTTLQELWISGCPI 942 (967)
Q Consensus 913 l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~ 942 (967)
+++| .++.+|. .+..+++|+.|++++||.
T Consensus 480 Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 480 ISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred cCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 9999 5666554 578899999999999985
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2.4e-25 Score=263.02 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=109.9
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-c
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-T 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~ 617 (967)
..++++.+.++.+..++. ..|.++++|++|++++|. +..+.+..|.++++|++|+|+ + +.+..+| .
T Consensus 28 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~-----~--n~l~~~~~~ 94 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-----G--NPIQSLALG 94 (570)
T ss_dssp SSCCEEECCSCCCCEECT---TTTTTCSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-----T--CCCCEECTT
T ss_pred ccccEEEccCCccCccCh---hHhhCCCCceEEECCCCc---CCccCcccccCchhCCEEeCc-----C--CcCCccCHh
Confidence 578899999888876653 467889999999999987 445567778899999999998 6 5566664 6
Q ss_pred ccccCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCc--ccCccccccccccEEecCCCccccccccCCCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLR--ELPQGIGKLRKLMYLYNDRTESLRYLPVGIEEL 694 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l 694 (967)
.++++++|++|++++|. +..+|. .++++++|++|++++|. ++ .+|..+.++++|++|++++|......|..++.+
T Consensus 95 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred hhcCccccccccccccc-cccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 78888899999998888 887775 57888889999998887 54 368888888888888888884322223344444
Q ss_pred CCC
Q 048084 695 IRL 697 (967)
Q Consensus 695 ~~L 697 (967)
++|
T Consensus 173 ~~L 175 (570)
T 2z63_A 173 HQM 175 (570)
T ss_dssp HTC
T ss_pred hcc
Confidence 444
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.5e-24 Score=248.22 Aligned_cols=363 Identities=17% Similarity=0.141 Sum_probs=249.3
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-cc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PT 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~ 617 (967)
..++++.+.++.+..++. ..|.++++|++|++++|.. ...+.+..|.++++|++|+|+ + +.+..+ |.
T Consensus 30 ~~l~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~L~~L~Ls-----~--n~l~~~~~~ 97 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE---TSFSRLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKLD-----Y--NQFLQLETG 97 (455)
T ss_dssp TTCCEEECCSSCCCEECT---TTTSSCTTCCEEECCCCST--TCEECTTTTTTCTTCCEEECT-----T--CTTCEECTT
T ss_pred CccCEEEecCCccCcCCh---hHhccCccccEEECcCCcc--cceECcccccccccCCEEeCC-----C--CccCccChh
Confidence 689999999998876642 5688999999999999973 123456779999999999999 6 556555 77
Q ss_pred ccccCCCCcEEEccCCCCccc-cchH--HhccCCCCEEecCCCCCCccc-Ccc-ccccccccEEecCCCccccccccCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEK-LPET--LCELYNLERLNVSGCRNLREL-PQG-IGKLRKLMYLYNDRTESLRYLPVGIE 692 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~-lp~~--~~~l~~L~~L~L~~~~~l~~l-p~~-l~~l~~L~~L~l~~~~~~~~~p~~~~ 692 (967)
.++++++|++|+|++|. +.. +|.. +..+++|++|+|++|. +..+ |.. +.++++|++|++++|......|..+.
T Consensus 98 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred hccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 89999999999999998 664 4544 8899999999999998 5554 655 78999999999999954444555565
Q ss_pred CC--CCCCcCCceEecCcCCCccCc-----cccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCC
Q 048084 693 EL--IRLRGVTKFVVGGGYDRACSL-----GSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDG 765 (967)
Q Consensus 693 ~l--~~L~~L~~~~~~~~~~~~~~l-----~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 765 (967)
.+ .+|+.|++..+.........+ ..+..++.|+.|++.+.......... ........+|+.|+++.|.....
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECTTCTTTSC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeecccccccc
Confidence 55 455555555444332111111 11223345555565543211111111 11122347888888887743321
Q ss_pred CcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccc
Q 048084 766 DEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLED 844 (967)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~ 844 (967)
........... ...... ...++|++|++++|.+.. .++.++..+++|+.|+|++|.+....|. +..+++|++
T Consensus 255 ~~~~~~~~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 255 SFGHTNFKDPD----NFTFKG-LEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp CTTCCSSCCCC----TTTTGG-GTTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccchhhhccCc----cccccc-ccccCceEEEecCccccc--cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 11000000000 000001 124789999999999877 6688899999999999999977766554 889999999
Q ss_pred eeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCc
Q 048084 845 LKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPD 924 (967)
Q Consensus 845 L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 924 (967)
|+|++|. ++.++.. .+..+++|+.|+++++. ++.+ .+..+..+++|+.|++++| .++.+|.
T Consensus 328 L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 328 LNLSQNF-LGSIDSR-----------MFENLDKLEVLDLSYNH-IRAL-----GDQSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp EECCSSC-CCEECGG-----------GGTTCTTCCEEECCSSC-CCEE-----CTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred EECCCCc-cCCcChh-----------HhcCcccCCEEECCCCc-cccc-----ChhhccccccccEEECCCC-ccccCCH
Confidence 9999964 3433221 13378999999999984 4433 3446778999999999999 6777776
Q ss_pred -CCCCCCCcCeEEEcCCcc
Q 048084 925 -HLLQKTTLQELWISGCPI 942 (967)
Q Consensus 925 -~~~~l~~L~~L~l~~c~~ 942 (967)
.+..+++|+.|++++||.
T Consensus 389 ~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTTTTCTTCCEEECCSSCB
T ss_pred hHhccCCcccEEEccCCCc
Confidence 457899999999999875
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=1.1e-24 Score=262.86 Aligned_cols=156 Identities=21% Similarity=0.161 Sum_probs=127.7
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc-
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT- 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~- 617 (967)
.+++++.+.++.+..++. ..|.++++|++|++++|. +..+.|..|.++++|++|+|+ + +.+..+|.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-----~--n~l~~l~~~ 91 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA---ANFTRYSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQ-----H--NELSQLSDK 91 (680)
T ss_dssp TTCSEEECCSSCCCCCCG---GGGGGGTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECC-----S--SCCCCCCTT
T ss_pred CCCcEEECCCCCCCCcCH---HHHhCCCcCcEEECCCCc---cCccCHHHHhcccCcCEEECC-----C--CccCccChh
Confidence 689999999999887763 468899999999999998 555678889999999999999 7 66788886
Q ss_pred ccccCCCCcEEEccCCCCccccc-hHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCcccccccc-CC--CC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLP-ETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPV-GI--EE 693 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~-~~--~~ 693 (967)
.++++++|++|+|++|. +..+| ..+.++++|++|++++|......|..+.++++|++|++++| .+..++. .+ ..
T Consensus 92 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFA 169 (680)
T ss_dssp TTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGT
T ss_pred hhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccc
Confidence 58999999999999998 88877 57899999999999999844555667889999999999999 4454443 23 34
Q ss_pred CCCCCcCCceEecCcC
Q 048084 694 LIRLRGVTKFVVGGGY 709 (967)
Q Consensus 694 l~~L~~L~~~~~~~~~ 709 (967)
+++|+.|++..+....
T Consensus 170 ~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKE 185 (680)
T ss_dssp TCEESEEECTTCCCCC
T ss_pred cccccEEECCCCcccc
Confidence 5788888777665544
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.4e-24 Score=246.46 Aligned_cols=321 Identities=20% Similarity=0.221 Sum_probs=173.2
Q ss_pred cEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccccc
Q 048084 540 KILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNI 619 (967)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i 619 (967)
.++.+.+.++.+..++ .+..+++|++|++++|.+ ..+.+ +.++++|++|+++ + +.+..++. +
T Consensus 47 ~l~~L~l~~~~i~~l~-----~~~~l~~L~~L~Ls~n~l---~~~~~--~~~l~~L~~L~l~-----~--n~l~~~~~-~ 108 (466)
T 1o6v_A 47 QVTTLQADRLGIKSID-----GVEYLNNLTQINFSNNQL---TDITP--LKNLTKLVDILMN-----N--NQIADITP-L 108 (466)
T ss_dssp TCCEEECCSSCCCCCT-----TGGGCTTCCEEECCSSCC---CCCGG--GTTCTTCCEEECC-----S--SCCCCCGG-G
T ss_pred cccEEecCCCCCccCc-----chhhhcCCCEEECCCCcc---CCchh--hhccccCCEEECC-----C--CccccChh-h
Confidence 3444444444444333 234455555555555542 22111 4455555555554 3 33333433 4
Q ss_pred ccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCc--------------------cccccccccEEecC
Q 048084 620 EKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQ--------------------GIGKLRKLMYLYND 679 (967)
Q Consensus 620 ~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~--------------------~l~~l~~L~~L~l~ 679 (967)
+++++|++|++++|. +..+|. +.++++|++|++++|. +..+|. .+.++++|++|+++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred cCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence 455555555555554 444443 4455555555555544 333331 24455555555555
Q ss_pred CCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEe
Q 048084 680 RTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHF 759 (967)
Q Consensus 680 ~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 759 (967)
+| .+..++ .+..+++|+.|++..+.... +..+..++.|+.|.+.+..... ...+..+++|+.|++++
T Consensus 186 ~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 186 SN-KVSDIS-VLAKLTNLESLIATNNQISD-----ITPLGILTNLDELSLNGNQLKD------IGTLASLTNLTDLDLAN 252 (466)
T ss_dssp SS-CCCCCG-GGGGCTTCSEEECCSSCCCC-----CGGGGGCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCS
T ss_pred CC-cCCCCh-hhccCCCCCEEEecCCcccc-----cccccccCCCCEEECCCCCccc------chhhhcCCCCCEEECCC
Confidence 55 233332 24445555555444433322 1113344445555444322111 02344556666666666
Q ss_pred ecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCC
Q 048084 760 CHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKL 839 (967)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l 839 (967)
|.+... ..+..+++|++|++++|.+.. .++ +..+++|+.|++++|.+. .++.++.+
T Consensus 253 n~l~~~-------------------~~~~~l~~L~~L~l~~n~l~~--~~~--~~~l~~L~~L~L~~n~l~-~~~~~~~l 308 (466)
T 1o6v_A 253 NQISNL-------------------APLSGLTKLTELKLGANQISN--ISP--LAGLTALTNLELNENQLE-DISPISNL 308 (466)
T ss_dssp SCCCCC-------------------GGGTTCTTCSEEECCSSCCCC--CGG--GTTCTTCSEEECCSSCCS-CCGGGGGC
T ss_pred Cccccc-------------------hhhhcCCCCCEEECCCCccCc--ccc--ccCCCccCeEEcCCCccc-CchhhcCC
Confidence 632211 115566777777777777665 422 667777777777777543 34446777
Q ss_pred CCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccC
Q 048084 840 PSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKL 919 (967)
Q Consensus 840 ~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l 919 (967)
++|+.|++++|. + .+..+ +..+++|+.|++++| .++.+. .+..+++|+.|++++| .+
T Consensus 309 ~~L~~L~L~~n~-l-------~~~~~------~~~l~~L~~L~l~~n-~l~~~~-------~l~~l~~L~~L~l~~n-~l 365 (466)
T 1o6v_A 309 KNLTYLTLYFNN-I-------SDISP------VSSLTKLQRLFFYNN-KVSDVS-------SLANLTNINWLSAGHN-QI 365 (466)
T ss_dssp TTCSEEECCSSC-C-------SCCGG------GGGCTTCCEEECCSS-CCCCCG-------GGTTCTTCCEEECCSS-CC
T ss_pred CCCCEEECcCCc-C-------CCchh------hccCccCCEeECCCC-ccCCch-------hhccCCCCCEEeCCCC-cc
Confidence 778888877753 2 11111 336788888888877 455442 4567899999999998 45
Q ss_pred cCCCcCCCCCCCcCeEEEcCCcc
Q 048084 920 KALPDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 920 ~~lp~~~~~l~~L~~L~l~~c~~ 942 (967)
..++. +..+++|+.|++++|+.
T Consensus 366 ~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 366 SDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CBCGG-GTTCTTCCEEECCCEEE
T ss_pred Cccch-hhcCCCCCEEeccCCcc
Confidence 55544 77789999999998865
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=6.8e-24 Score=260.60 Aligned_cols=275 Identities=19% Similarity=0.113 Sum_probs=179.6
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-cc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PT 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~ 617 (967)
+.++++.+.++.+..+.. ..|.++++|++|++++|.. ...+.|..|.++++|++|+|+ + |.+..+ |.
T Consensus 24 ~~l~~LdLs~N~i~~i~~---~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls-----~--N~l~~~~p~ 91 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTA---SSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLG-----S--SKIYFLHPD 91 (844)
T ss_dssp TTCCEEEEESCCCCEECS---SSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECT-----T--CCCCEECTT
T ss_pred CCcCEEECCCCcCCccCh---hHCcccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECC-----C--CcCcccCHh
Confidence 789999999999876643 5789999999999999953 334457889999999999998 6 556655 78
Q ss_pred ccccCCCCcEEEccCCCCccc-cchH--HhccCCCCEEecCCCCCCccc-C-ccccccccccEEecCCCccccccccCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEK-LPET--LCELYNLERLNVSGCRNLREL-P-QGIGKLRKLMYLYNDRTESLRYLPVGIE 692 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~-lp~~--~~~l~~L~~L~L~~~~~l~~l-p-~~l~~l~~L~~L~l~~~~~~~~~p~~~~ 692 (967)
.++++++|++|+|++|. +.. +|.. +.++++|++|+|++|. +..+ | ..++++++|++|++++|......|..+.
T Consensus 92 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp SSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 89999999999999998 654 5654 8899999999999998 5444 2 5688999999999998854444444554
Q ss_pred CC--CCCCcCCceEecCcCCCccCcccccc--------------------------------------------------
Q 048084 693 EL--IRLRGVTKFVVGGGYDRACSLGSLKK-------------------------------------------------- 720 (967)
Q Consensus 693 ~l--~~L~~L~~~~~~~~~~~~~~l~~l~~-------------------------------------------------- 720 (967)
.+ ++|+.|++..+.........+..+.+
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 44 55555554443332211111111100
Q ss_pred ---------------CCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhh
Q 048084 721 ---------------LNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLE 785 (967)
Q Consensus 721 ---------------L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (967)
...|+.|.+.+.. ........+..+++|+.|++++|.+... .+.
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~~~ 308 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGF----VFSLNSRVFETLKDLKVLNLAYNKINKI-----------------ADE 308 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCC----CCEECSCCSSSCCCCCEEEEESCCCCEE-----------------CTT
T ss_pred cccCCCChhhhhccccCCccEEECCCCc----ccccChhhhhcCCCCCEEECCCCcCCCC-----------------ChH
Confidence 0112222222110 0111223345566677777766643221 123
Q ss_pred hCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeeccc
Q 048084 786 ALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGM 850 (967)
Q Consensus 786 ~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c 850 (967)
.+..+++|++|+|++|.+.. +.+..+..+++|+.|++++|.+....+. +..+++|+.|+|+++
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGE--LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSC--CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred HhcCCCCCCEEECCCCCCCc--cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 45667778888888777765 5466777777888888887754433332 667777777777764
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-24 Score=240.51 Aligned_cols=305 Identities=17% Similarity=0.124 Sum_probs=203.8
Q ss_pred CCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-cccccCCCCcEEEccCCCCccccc-h
Q 048084 564 GLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEKLLHLKYLNLFCQREIEKLP-E 641 (967)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~l~~L~~L~Ls~~~~i~~lp-~ 641 (967)
.+++++.|+++++. +..+.+..|..+++|++|+|+ + +.+..++ ..++++++|++|+|++|. +..+| .
T Consensus 43 ~l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~-----~--n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 111 (390)
T 3o6n_A 43 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-----D--LQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 111 (390)
T ss_dssp GGCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECT-----T--SCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ccCCceEEEecCCc---hhhCChhHhcccccCcEEECC-----C--CcccccChhhccCCCCcCEEECCCCC-CCcCCHH
Confidence 35666777776665 334445556667777777776 5 4455554 356667777777777776 55554 3
Q ss_pred HHhccCCCCEEecCCCCCCcccCcc-ccccccccEEecCCCcccccc-ccCCCCCCCCCcCCceEecCcCCCccCccccc
Q 048084 642 TLCELYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRTESLRYL-PVGIEELIRLRGVTKFVVGGGYDRACSLGSLK 719 (967)
Q Consensus 642 ~~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~ 719 (967)
.+.++++|++|+|++|. ++.+|.. +.++++|++|++++|. +..+ |..+..+++|+.|++..+..... .+.
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~ 183 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV------DLS 183 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBC------CGG
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCcc------ccc
Confidence 45667777777777766 6666655 3667777777777663 3333 33466666666666655543321 233
Q ss_pred cCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEe
Q 048084 720 KLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRID 799 (967)
Q Consensus 720 ~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 799 (967)
.++.|+.+.+.... ...+....+|+.|++++|.+... + ...+++|+.|+++
T Consensus 184 ~l~~L~~L~l~~n~---------l~~~~~~~~L~~L~l~~n~l~~~------------------~--~~~~~~L~~L~l~ 234 (390)
T 3o6n_A 184 LIPSLFHANVSYNL---------LSTLAIPIAVEELDASHNSINVV------------------R--GPVNVELTILKLQ 234 (390)
T ss_dssp GCTTCSEEECCSSC---------CSEEECCSSCSEEECCSSCCCEE------------------E--CCCCSSCCEEECC
T ss_pred cccccceeeccccc---------ccccCCCCcceEEECCCCeeeec------------------c--ccccccccEEECC
Confidence 44445544443311 11233456899999998843221 1 1235789999999
Q ss_pred eeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeeccccCceEeCccccCCCCCCCCccccccccc
Q 048084 800 EYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKL 878 (967)
Q Consensus 800 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 878 (967)
+|.+.. +.++..+++|+.|++++|.+....|. +..+++|+.|+|+++. ++.++.. ...+++|
T Consensus 235 ~n~l~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------------~~~l~~L 297 (390)
T 3o6n_A 235 HNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------GQPIPTL 297 (390)
T ss_dssp SSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS------------SSCCTTC
T ss_pred CCCCcc----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc------------cCCCCCC
Confidence 998876 46888999999999999976665454 8899999999999854 4444322 1268999
Q ss_pred ccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCCcch
Q 048084 879 KLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGCPIL 943 (967)
Q Consensus 879 ~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 943 (967)
+.|+++++ .++.++. .+..+++|+.|++++| .++.+| +..+++|+.|++++||.-
T Consensus 298 ~~L~L~~n-~l~~~~~------~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 298 KVLDLSHN-HLLHVER------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CEEECCSS-CCCCCGG------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CEEECCCC-cceecCc------cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCcc
Confidence 99999998 5665432 4567899999999999 677776 667899999999999863
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=3.9e-24 Score=251.12 Aligned_cols=342 Identities=17% Similarity=0.148 Sum_probs=205.3
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
+.++++.+.++.+..++. ..|.++++|++|++++|. +..+.|..|.++++|++|+|+ + |.+..+|..
T Consensus 52 ~~L~~L~Ls~N~i~~~~~---~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls-----~--N~l~~lp~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELRM---PDISFLSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVS-----H--NRLQNISCC 118 (562)
T ss_dssp TTCCEEECCSSCCCCCCG---GGTTTCTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECT-----T--SCCCEECSC
T ss_pred CCcCEEECCCCCccccCh---hhhccCCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECC-----C--CcCCccCcc
Confidence 678888888888877653 567888999999999887 445567778889999999998 6 667778866
Q ss_pred cccCCCCcEEEccCCCCccccc--hHHhccCCCCEEecCCCCCCcccCccccccccc--cEEecCCCcc--ccccccCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLP--ETLCELYNLERLNVSGCRNLRELPQGIGKLRKL--MYLYNDRTES--LRYLPVGIE 692 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp--~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L--~~L~l~~~~~--~~~~p~~~~ 692 (967)
.+++|++|+|++|. +..+| ..+.++++|++|++++|. ++. ..+..+++| ++|++++|.. ....|..+.
T Consensus 119 --~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~ 192 (562)
T 3a79_B 119 --PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192 (562)
T ss_dssp --CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred --ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCccccc
Confidence 78889999999988 77654 678889999999999887 443 245555555 8888887743 223333332
Q ss_pred CC--------------------------CCCCcC----------------------------------------------
Q 048084 693 EL--------------------------IRLRGV---------------------------------------------- 700 (967)
Q Consensus 693 ~l--------------------------~~L~~L---------------------------------------------- 700 (967)
.+ ++|+.|
T Consensus 193 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 272 (562)
T 3a79_B 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272 (562)
T ss_dssp ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence 22 122222
Q ss_pred ---------CceEecCcCCCccCccc--cccCCCCCCeEEcCcCCCCChhhhHHhhc---------------------cC
Q 048084 701 ---------TKFVVGGGYDRACSLGS--LKKLNLLRECWICGLGGVSDAGEARRAEL---------------------EK 748 (967)
Q Consensus 701 ---------~~~~~~~~~~~~~~l~~--l~~L~~L~~L~i~~l~~~~~~~~~~~~~l---------------------~~ 748 (967)
++..+......+..+-. ..+++.|+.+.+..... ..........+ ..
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 351 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccCccC
Confidence 22222111100000000 01111111111111000 00000000000 23
Q ss_pred CCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCC--CchhhcccccceeEecC
Q 048084 749 KKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVP--INWIMSLTNLRDLSLIM 826 (967)
Q Consensus 749 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~--~~~l~~l~~L~~L~L~~ 826 (967)
+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.. ++ |..+..+++|+.|++++
T Consensus 352 l~~L~~L~l~~n~l~~-----------------~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTD-----------------SVFQGCSTLKRLQTLILQRNGLKN--FFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp CCCCCEEECCSSCCCT-----------------TTTTTCCSCSSCCEEECCSSCCCB--TTHHHHTTTTCTTCCEEECTT
T ss_pred CCCceEEECCCCcccc-----------------chhhhhcccCCCCEEECCCCCcCC--cccchhhhcCCCCCCEEECCC
Confidence 3444444444442211 123455666677777777766654 32 23455667777777777
Q ss_pred ccCCCCCCC--CCCCCCccceeeccccCceEeCccccCCCCCCCCcccccc-cccccccccccccccccccccccccccc
Q 048084 827 WRNREHLPP--LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAF-PKLKLLRFDNMKELEELDFRTAIKGEII 903 (967)
Q Consensus 827 ~~~~~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 903 (967)
|.+...+|. +..+++|+.|++++|. +.+.. ...+ ++|+.|+++++ .++.++ ..+.
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~--------l~~~~-------~~~l~~~L~~L~L~~N-~l~~ip------~~~~ 470 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNM--------LTGSV-------FRCLPPKVKVLDLHNN-RIMSIP------KDVT 470 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSC--------CCGGG-------GSSCCTTCSEEECCSS-CCCCCC------TTTT
T ss_pred CcCCCccChhhhcCcccCCEEECCCCC--------CCcch-------hhhhcCcCCEEECCCC-cCcccC------hhhc
Confidence 765553443 5566777777777643 11111 1133 57888888877 565443 2455
Q ss_pred cCcccceeeeccCccCcCCCcC-CCCCCCcCeEEEcCCcc
Q 048084 904 IMPRLSSLQILRCLKLKALPDH-LLQKTTLQELWISGCPI 942 (967)
Q Consensus 904 ~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~ 942 (967)
.+++|+.|++++| .++.+|.. +..+++|+.|++++||.
T Consensus 471 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 471 HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 7899999999999 78889987 88899999999999985
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.5e-24 Score=257.94 Aligned_cols=140 Identities=14% Similarity=0.077 Sum_probs=83.7
Q ss_pred hCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC--CCCCCCccceeeccccCceEeCccccCC
Q 048084 786 ALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP--LGKLPSLEDLKIQGMQSVKRVGNEFLGV 863 (967)
Q Consensus 786 ~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~ 863 (967)
.+..+++|++|++++|.... .++..+..+++|+.|++++|.+....+. +..+++|+.|++++|.. ...
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--------~~~ 440 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLS--LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--------DIS 440 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEE--ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC--------BTT
T ss_pred hcccCCCCCEEECCCCcCCc--CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc--------CCc
Confidence 45566677777777766654 4456666677777777777755544332 66677777777776431 111
Q ss_pred CCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCCcc
Q 048084 864 ESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 864 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 942 (967)
.+ ..+..+++|+.|+++++. +....+. .+..+..+++|+.|++++|......|..+..+++|++|++++|..
T Consensus 441 ~~----~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 441 SE----QLFDGLPALQHLNLQGNH-FPKGNIQ--KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp CT----TTTTTCTTCCEEECTTCB-CGGGEEC--SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CH----HHHhCCCCCCEEECCCCC-CCccccc--cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 11 113357777777777763 3321110 112355677888888888743333456677778888888887754
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.6e-24 Score=255.78 Aligned_cols=362 Identities=17% Similarity=0.106 Sum_probs=236.3
Q ss_pred EEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-cccccc
Q 048084 543 HLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIEK 621 (967)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~~ 621 (967)
++...+..+..+|..+ .++|++|++++|. +..+.+..|.++++|++|+|+ + +.+..+ |..|++
T Consensus 15 ~~~c~~~~l~~ip~~~------~~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-----~--n~l~~i~~~~~~~ 78 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDI------PSSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLS-----R--CEIETIEDKAWHG 78 (606)
T ss_dssp EEECTTSCCSSCCTTS------CTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-----T--CCCCEECTTTTTT
T ss_pred ceEccCCCcccCCCCC------CCCcCEEECCCCC---cCEeChhhccCCccCcEEeCC-----C--CcccccCHHHhhc
Confidence 4555666677777432 2889999999998 555677789999999999999 6 567766 567899
Q ss_pred CCCCcEEEccCCCCcccc-chHHhccCCCCEEecCCCCCCcccC-ccccccccccEEecCCCcccc-ccccCCCCCCCCC
Q 048084 622 LLHLKYLNLFCQREIEKL-PETLCELYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLR-YLPVGIEELIRLR 698 (967)
Q Consensus 622 l~~L~~L~Ls~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~ 698 (967)
+++|++|+|++|. +..+ |..+.++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|+
T Consensus 79 l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 79 LHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp CTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred hhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 9999999999999 8777 7789999999999999999 66665 679999999999999994433 5788999999999
Q ss_pred cCCceEecCcCCCccCccccccCCC-CCCeEEcCcCC--------------------CCChhhhHHhhccCCCCCCcEEE
Q 048084 699 GVTKFVVGGGYDRACSLGSLKKLNL-LRECWICGLGG--------------------VSDAGEARRAELEKKKNLFKLGL 757 (967)
Q Consensus 699 ~L~~~~~~~~~~~~~~l~~l~~L~~-L~~L~i~~l~~--------------------~~~~~~~~~~~l~~~~~L~~L~l 757 (967)
.|++..+.........+..+.+|+. +..+.+..... ........+..+..+++|+.+.+
T Consensus 157 ~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l 236 (606)
T 3vq2_A 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236 (606)
T ss_dssp EEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEE
T ss_pred EEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccc
Confidence 9998887665544445556665543 22333332110 11111223333444444444444
Q ss_pred EeecCCCCCcc------cccCCC--------C-chhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhccccccee
Q 048084 758 HFCHSRDGDEE------QAGRRE--------N-EEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDL 822 (967)
Q Consensus 758 ~~~~~~~~~~~------~~~~~~--------~-~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L 822 (967)
..+........ ...... . ...........+..+++|+.|+++++.... + + ++..+++|+.|
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l-~-~l~~~~~L~~L 312 (606)
T 3vq2_A 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--L-E-DVPKHFKWQSL 312 (606)
T ss_dssp EEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC--C-C-CCCTTCCCSEE
T ss_pred cccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh--h-h-hccccccCCEE
Confidence 43321110000 000000 0 000011112225667889999999888866 5 4 77788899999
Q ss_pred EecCccCCCCCCCCCCCCCccceeeccccCceEeCccccCCCCCCCCccccccccccccccccc---------------c
Q 048084 823 SLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNM---------------K 887 (967)
Q Consensus 823 ~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---------------~ 887 (967)
++++|.+ +.+|.+ .+++|+.|++++|..+..+. +..+++|+.|+++++ +
T Consensus 313 ~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--------------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 313 SIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--------------KVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376 (606)
T ss_dssp EEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--------------CCCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred EcccccC-cccccC-CCCccceeeccCCcCccchh--------------hccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence 9999866 777777 88888888888875444321 124555555555543 1
Q ss_pred cccccccccc----cccccccCcccceeeeccCccCcCCC-cCCCCCCCcCeEEEcCCcc
Q 048084 888 ELEELDFRTA----IKGEIIIMPRLSSLQILRCLKLKALP-DHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 888 ~L~~l~~~~~----~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~ 942 (967)
+|+.+.++.+ .+..+..+++|+.|++++|......| ..+..+++|+.|++++|..
T Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 2222222211 22355667888888888884444344 4677788888888888864
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=6.2e-24 Score=250.58 Aligned_cols=306 Identities=17% Similarity=0.119 Sum_probs=213.1
Q ss_pred CCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-cccccCCCCcEEEccCCCCccccch-
Q 048084 564 GLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEKLLHLKYLNLFCQREIEKLPE- 641 (967)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~l~~L~~L~Ls~~~~i~~lp~- 641 (967)
.+++++.|++++|. +..+.+..|.++++|++|+|+ + +.+..++ ..++.+++|++|+|++|. +..+|.
T Consensus 49 ~l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~-----~--n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 117 (597)
T 3oja_B 49 TLNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-----D--LQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH 117 (597)
T ss_dssp GGCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECT-----T--SCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECC-----C--CCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHH
Confidence 35677777777776 444456667777777777777 5 4455554 367777777777777777 666654
Q ss_pred HHhccCCCCEEecCCCCCCcccCcc-ccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCcccccc
Q 048084 642 TLCELYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKK 720 (967)
Q Consensus 642 ~~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~ 720 (967)
.++++++|++|+|++|. ++.+|.. +.++++|++|++++|......|..++.+++|+.|++..+..... .+..
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~ 190 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSL 190 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC------CGGG
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc------Chhh
Confidence 45777777777777776 6666655 46777777777777743333344577777777777665544331 1334
Q ss_pred CCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEee
Q 048084 721 LNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDE 800 (967)
Q Consensus 721 L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 800 (967)
++.|+.|.+.+.. ...+....+|+.|++++|.+... +. ..+++|+.|+|++
T Consensus 191 l~~L~~L~l~~n~---------l~~l~~~~~L~~L~ls~n~l~~~------------------~~--~~~~~L~~L~L~~ 241 (597)
T 3oja_B 191 IPSLFHANVSYNL---------LSTLAIPIAVEELDASHNSINVV------------------RG--PVNVELTILKLQH 241 (597)
T ss_dssp CTTCSEEECCSSC---------CSEEECCTTCSEEECCSSCCCEE------------------EC--SCCSCCCEEECCS
T ss_pred hhhhhhhhcccCc---------cccccCCchhheeeccCCccccc------------------cc--ccCCCCCEEECCC
Confidence 4455555544321 11234556899999998853221 11 1236899999999
Q ss_pred eCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccc
Q 048084 801 YGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLK 879 (967)
Q Consensus 801 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 879 (967)
|.+.. +.++..+++|+.|+|++|.+....|. ++.+++|+.|+|++|. ++.++.. ...+|+|+
T Consensus 242 n~l~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------------~~~l~~L~ 304 (597)
T 3oja_B 242 NNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------GQPIPTLK 304 (597)
T ss_dssp SCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS------------SSCCTTCC
T ss_pred CCCCC----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc------------cccCCCCc
Confidence 98876 67889999999999999977666554 8899999999999854 4444321 22689999
Q ss_pred cccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCCcch
Q 048084 880 LLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGCPIL 943 (967)
Q Consensus 880 ~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 943 (967)
.|+|++| .+..++ ..+..+++|+.|++++| .+..+| +..+++|+.|++++||.-
T Consensus 305 ~L~Ls~N-~l~~i~------~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 305 VLDLSHN-HLLHVE------RNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp EEECCSS-CCCCCG------GGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred EEECCCC-CCCccC------cccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 9999998 455443 25567999999999999 577676 667899999999999864
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=240.61 Aligned_cols=263 Identities=20% Similarity=0.157 Sum_probs=152.0
Q ss_pred EEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-ccccccC
Q 048084 544 LMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIEKL 622 (967)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~~l 622 (967)
+......+..+|..+ .++++.|++++|. +..+.+..|.++++|++|+|+ + +.+..+ |..++++
T Consensus 16 v~c~~~~l~~ip~~~------~~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-----~--n~i~~~~~~~~~~l 79 (477)
T 2id5_A 16 VLCHRKRFVAVPEGI------PTETRLLDLGKNR---IKTLNQDEFASFPHLEELELN-----E--NIVSAVEPGAFNNL 79 (477)
T ss_dssp EECCSCCCSSCCSCC------CTTCSEEECCSSC---CCEECTTTTTTCTTCCEEECT-----T--SCCCEECTTTTTTC
T ss_pred EEeCCCCcCcCCCCC------CCCCcEEECCCCc---cceECHhHccCCCCCCEEECC-----C--CccCEeChhhhhCC
Confidence 444445566666322 2578888888887 444556778888888888888 6 556555 6678888
Q ss_pred CCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCC
Q 048084 623 LHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVT 701 (967)
Q Consensus 623 ~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 701 (967)
++|++|+|++|. +..+|.. +.++++|++|+|++|......|..+..+++|++|++++|......|..+..+++|+.|+
T Consensus 80 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 80 FNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp TTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred ccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 888888888888 7877753 67888888888888884444466788888888888888843333445677777777776
Q ss_pred ceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHH
Q 048084 702 KFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDE 781 (967)
Q Consensus 702 ~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 781 (967)
+..+...... ...+..++.|+.|.+.+... .......+..+++|+.|++++|.....
T Consensus 159 l~~n~l~~~~---~~~l~~l~~L~~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~~~~~~~---------------- 215 (477)
T 2id5_A 159 LEKCNLTSIP---TEALSHLHGLIVLRLRHLNI----NAIRDYSFKRLYRLKVLEISHWPYLDT---------------- 215 (477)
T ss_dssp EESCCCSSCC---HHHHTTCTTCCEEEEESCCC----CEECTTCSCSCTTCCEEEEECCTTCCE----------------
T ss_pred CCCCcCcccC---hhHhcccCCCcEEeCCCCcC----cEeChhhcccCcccceeeCCCCccccc----------------
Confidence 6655433211 11123333444444333111 111122344455555555555532110
Q ss_pred HHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeecc
Q 048084 782 RLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQG 849 (967)
Q Consensus 782 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 849 (967)
++.......+|++|+|++|.+.. +++..+..+++|+.|+|++|.+....+. +..+++|+.|+|++
T Consensus 216 -~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 216 -MTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp -ECTTTTTTCCCSEEEEESSCCCS--CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred -cCcccccCccccEEECcCCcccc--cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 11122222355555555555544 4333455555555555555543322222 44555555555555
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=6.9e-24 Score=249.00 Aligned_cols=355 Identities=15% Similarity=0.098 Sum_probs=228.0
Q ss_pred EEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-cccc
Q 048084 541 ILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNI 619 (967)
Q Consensus 541 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i 619 (967)
.+++.+.++.+..+|..+ .++|++|++++|. +..+.+..|.++++|++|+|+ + |.+..+ |..+
T Consensus 33 ~~~l~ls~~~L~~ip~~~------~~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-----~--N~l~~~~~~~~ 96 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL------PPRTKALSLSQNS---ISELRMPDISFLSELRVLRLS-----H--NRIRSLDFHVF 96 (562)
T ss_dssp CCEEECTTSCCCSCCTTS------CTTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECC-----S--CCCCEECTTTT
T ss_pred CcEEEcCCCCCccCCCCC------CCCcCEEECCCCC---ccccChhhhccCCCccEEECC-----C--CCCCcCCHHHh
Confidence 367888888888888432 2899999999998 555667789999999999999 7 667776 6779
Q ss_pred ccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCccc--CccccccccccEEecCCCccccccccCCCCCCCC
Q 048084 620 EKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLREL--PQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRL 697 (967)
Q Consensus 620 ~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~l--p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 697 (967)
+++++|++|+|++|. ++.+|.. .+++|++|+|++|. ++.+ |..++++++|++|++++|. +.. ..+..+++|
T Consensus 97 ~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L 169 (562)
T 3a79_B 97 LFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHL 169 (562)
T ss_dssp TTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTS
T ss_pred CCCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--Cchhhhhhc
Confidence 999999999999999 9999986 89999999999999 6665 4789999999999999984 433 345666666
Q ss_pred --CcCCceEecC--cCCCccCccccc-----------------------cCCCCCCeEEcCcC-----------------
Q 048084 698 --RGVTKFVVGG--GYDRACSLGSLK-----------------------KLNLLRECWICGLG----------------- 733 (967)
Q Consensus 698 --~~L~~~~~~~--~~~~~~~l~~l~-----------------------~L~~L~~L~i~~l~----------------- 733 (967)
+.|++..+.. .......+..+. .++.|+.+++....
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~ 249 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS
T ss_pred eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC
Confidence 7777776654 222222222221 22233333333210
Q ss_pred -----------CCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccc-----cCC-------------CCchhhHHHHh
Q 048084 734 -----------GVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQA-----GRR-------------ENEEDEDERLL 784 (967)
Q Consensus 734 -----------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~-------------~~~~~~~~~~~ 784 (967)
........... .....+|++|++++|.+.+..+... ... ...........
T Consensus 250 ~L~~L~L~~~~l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~ 328 (562)
T 3a79_B 250 TLLNVTLQHIETTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328 (562)
T ss_dssp SCEEEEEEEEEECHHHHHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH
T ss_pred cceEEEecCCcCcHHHHHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhh
Confidence 00000000011 1123478888888886553211100 000 00000000000
Q ss_pred h------------------hCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCC--CC-CCCCCCCcc
Q 048084 785 E------------------ALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREH--LP-PLGKLPSLE 843 (967)
Q Consensus 785 ~------------------~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~--l~-~l~~l~~L~ 843 (967)
. ....+++|++|++++|.+.. ..|.++..+++|+.|++++|.+... +| .++.+++|+
T Consensus 329 ~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT--TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred ccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc--chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence 0 00456677777777776655 3366667777777777777744331 12 266777777
Q ss_pred ceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccC-cccceeeeccCccCcCC
Q 048084 844 DLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIM-PRLSSLQILRCLKLKAL 922 (967)
Q Consensus 844 ~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~l 922 (967)
.|+++++..-..++.. .+..+++|+.|+++++. ++ +..+. .+ ++|+.|++++| .++.+
T Consensus 407 ~L~l~~N~l~~~~~~~-----------~~~~l~~L~~L~l~~n~-l~-----~~~~~---~l~~~L~~L~L~~N-~l~~i 465 (562)
T 3a79_B 407 TLDVSLNSLNSHAYDR-----------TCAWAESILVLNLSSNM-LT-----GSVFR---CLPPKVKVLDLHNN-RIMSI 465 (562)
T ss_dssp EEECTTSCCBSCCSSC-----------CCCCCTTCCEEECCSSC-CC-----GGGGS---SCCTTCSEEECCSS-CCCCC
T ss_pred EEECCCCcCCCccChh-----------hhcCcccCCEEECCCCC-CC-----cchhh---hhcCcCCEEECCCC-cCccc
Confidence 7777774321112211 12367788888888774 32 22222 33 69999999999 88899
Q ss_pred CcCCCCCCCcCeEEEcCCcc
Q 048084 923 PDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 923 p~~~~~l~~L~~L~l~~c~~ 942 (967)
|..+..+++|++|++++|..
T Consensus 466 p~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp CTTTTSSCCCSEEECCSSCC
T ss_pred ChhhcCCCCCCEEECCCCCC
Confidence 99888999999999999964
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.2e-23 Score=231.11 Aligned_cols=280 Identities=19% Similarity=0.216 Sum_probs=207.4
Q ss_pred cccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc
Q 048084 538 EKKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT 617 (967)
Q Consensus 538 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~ 617 (967)
.+.++++.+.++.+..++ .+..+++|++|++++|.+. . ++ .|.++++|++|+++ + +.+..++.
T Consensus 65 ~~~L~~L~l~~n~i~~~~-----~~~~l~~L~~L~L~~n~i~---~-~~-~~~~l~~L~~L~l~-----~--n~i~~~~~ 127 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDIS-----PLSNLVKLTNLYIGTNKIT---D-IS-ALQNLTNLRELYLN-----E--DNISDISP 127 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSSCCC---C-CG-GGTTCTTCSEEECT-----T--SCCCCCGG
T ss_pred cCCccEEEccCCccccch-----hhhcCCcCCEEEccCCccc---C-ch-HHcCCCcCCEEECc-----C--CcccCchh
Confidence 368999999999888765 2889999999999999843 3 33 48999999999999 6 66777766
Q ss_pred ccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRL 697 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 697 (967)
+..+++|++|++++|..+..++. +..+++|++|++++|. +..++. +..+++|++|++++| .+..++. +..+++|
T Consensus 128 -~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L 201 (347)
T 4fmz_A 128 -LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSL 201 (347)
T ss_dssp -GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTC
T ss_pred -hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCC-ccccccc-ccCCCcc
Confidence 88999999999999975666665 9999999999999998 776655 889999999999999 4555443 4555555
Q ss_pred CcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCch
Q 048084 698 RGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEE 777 (967)
Q Consensus 698 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 777 (967)
+.|++..+.... . ..+..+++|++|++++|.+...
T Consensus 202 ~~L~l~~n~l~~---------------------------~------~~~~~~~~L~~L~l~~n~l~~~------------ 236 (347)
T 4fmz_A 202 HYFTAYVNQITD---------------------------I------TPVANMTRLNSLKIGNNKITDL------------ 236 (347)
T ss_dssp CEEECCSSCCCC---------------------------C------GGGGGCTTCCEEECCSSCCCCC------------
T ss_pred ceeecccCCCCC---------------------------C------chhhcCCcCCEEEccCCccCCC------------
Confidence 554443322111 0 0145667888888888843321
Q ss_pred hhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeC
Q 048084 778 DEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVG 857 (967)
Q Consensus 778 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~ 857 (967)
..+..+++|++|++++|.+.. + ..+..+++|+.|++++|.+. .++.+..+++|+.|++++|. ++..+
T Consensus 237 -------~~~~~l~~L~~L~l~~n~l~~--~--~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~-l~~~~ 303 (347)
T 4fmz_A 237 -------SPLANLSQLTWLEIGTNQISD--I--NAVKDLTKLKMLNVGSNQIS-DISVLNNLSQLNSLFLNNNQ-LGNED 303 (347)
T ss_dssp -------GGGTTCTTCCEEECCSSCCCC--C--GGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSC-CCGGG
T ss_pred -------cchhcCCCCCEEECCCCccCC--C--hhHhcCCCcCEEEccCCccC-CChhhcCCCCCCEEECcCCc-CCCcC
Confidence 116677889999999888766 3 46778899999999998544 45668888999999999864 22111
Q ss_pred ccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCc
Q 048084 858 NEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCL 917 (967)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 917 (967)
. ..+..+++|+.|++++|+ ++.+. .+..+++|+.|++++|+
T Consensus 304 ~-----------~~l~~l~~L~~L~L~~n~-l~~~~-------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 304 M-----------EVIGGLTNLTTLFLSQNH-ITDIR-------PLASLSKMDSADFANQV 344 (347)
T ss_dssp H-----------HHHHTCTTCSEEECCSSS-CCCCG-------GGGGCTTCSEESSSCC-
T ss_pred h-----------hHhhccccCCEEEccCCc-ccccc-------Chhhhhccceeehhhhc
Confidence 1 113468899999999885 54443 25578999999999984
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=3.4e-23 Score=234.45 Aligned_cols=304 Identities=15% Similarity=0.137 Sum_probs=195.9
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++++.+.++.+..+| .+..+++|++|++++|.+. . +| +..+++|++|+++ + +.+..+|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~Ls~n~l~---~-~~--~~~l~~L~~L~Ls-----~--N~l~~~~-- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-----GIEKLTGLTKLICTSNNIT---T-LD--LSQNTNLTYLACD-----S--NKLTNLD-- 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT-----TGGGCTTCSEEECCSSCCS---C-CC--CTTCTTCSEEECC-----S--SCCSCCC--
T ss_pred CCCCEEEccCCCcccCh-----hhcccCCCCEEEccCCcCC---e-Ec--cccCCCCCEEECc-----C--CCCceee--
Confidence 56788888888877654 4678888999999988743 3 23 7888889999998 6 5566664
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLR 698 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 698 (967)
++++++|++|++++|. ++.+| +..+++|++|++++|. ++.+| ++.+++|++|++++|..+..+ .++.+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 7888899999999888 88776 7888899999999888 66664 778888999999888666555 467778888
Q ss_pred cCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchh
Q 048084 699 GVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEED 778 (967)
Q Consensus 699 ~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 778 (967)
.|++..+.... +. +..++.|+.|.+.+..-.. . .+..+++|+.|++++|.+..
T Consensus 174 ~L~ls~n~l~~-----l~-l~~l~~L~~L~l~~N~l~~----~---~l~~l~~L~~L~Ls~N~l~~-------------- 226 (457)
T 3bz5_A 174 TLDCSFNKITE-----LD-VSQNKLLNRLNCDTNNITK----L---DLNQNIQLTFLDCSSNKLTE-------------- 226 (457)
T ss_dssp EEECCSSCCCC-----CC-CTTCTTCCEEECCSSCCSC----C---CCTTCTTCSEEECCSSCCSC--------------
T ss_pred EEECCCCccce-----ec-cccCCCCCEEECcCCcCCe----e---ccccCCCCCEEECcCCcccc--------------
Confidence 88777665443 11 4455556655554422111 0 25667788888888774322
Q ss_pred hHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhccc-------ccceeEecCccCCCCCCCCCCCCCccceeecccc
Q 048084 779 EDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLT-------NLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQ 851 (967)
Q Consensus 779 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~-------~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~ 851 (967)
++ +..+++|+.|++++|.+.. .++..+.++. +|+.|++++|.....+| .+.+++|+.|++++|.
T Consensus 227 ----ip--~~~l~~L~~L~l~~N~l~~--~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 227 ----ID--VTPLTQLTYFDCSVNPLTE--LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNT 297 (457)
T ss_dssp ----CC--CTTCTTCSEEECCSSCCSC--CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCT
T ss_pred ----cC--ccccCCCCEEEeeCCcCCC--cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCc
Confidence 11 5567788888888887766 4333333332 34455555554444444 4567778888887777
Q ss_pred CceEeCccccCCCCCCCCccccccccccccccccccccccccccccccc--ccccCcccceeeeccCccCcCC
Q 048084 852 SVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKG--EIIIMPRLSSLQILRCLKLKAL 922 (967)
Q Consensus 852 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~--~~~~l~~L~~L~l~~c~~l~~l 922 (967)
.+..++.. +++|+.|++++|++|+.+.++.+.-. .+..+++|+.|++++| .++.+
T Consensus 298 ~l~~l~~~---------------~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 298 QLYLLDCQ---------------AAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp TCCEEECT---------------TCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSS-CCCBC
T ss_pred ccceeccC---------------CCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCC-CCCCc
Confidence 66655432 23333333333333333333211000 2446777777777776 44443
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=4.2e-23 Score=240.37 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=118.8
Q ss_pred EEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-ccccc
Q 048084 542 LHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIE 620 (967)
Q Consensus 542 ~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~ 620 (967)
+++.+.++.+..+|.. +. ++|++|++++|. +..+.|..|.++++|++|+|+ + |.+..+ |..++
T Consensus 3 ~~l~ls~n~l~~ip~~----~~--~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-----~--n~l~~~~~~~~~ 66 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD----LS--QKTTILNISQNY---ISELWTSDILSLSKLRILIIS-----H--NRIQYLDISVFK 66 (520)
T ss_dssp CEEECTTSCCSSCCCS----CC--TTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECC-----S--SCCCEEEGGGGT
T ss_pred ceEecCCCCccccccc----cc--ccccEEECCCCc---ccccChhhccccccccEEecC-----C--CccCCcChHHhh
Confidence 4677788888888743 33 899999999998 555677889999999999999 7 667766 67899
Q ss_pred cCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcc--cCccccccccccEEecCCCccccccccCCCCCCCC-
Q 048084 621 KLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRE--LPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRL- 697 (967)
Q Consensus 621 ~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L- 697 (967)
++++|++|+|++|. ++.+|.. .+++|++|+|++|. ++. +|..++++++|++|++++|. +.. ..+..+++|
T Consensus 67 ~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~ 139 (520)
T 2z7x_B 67 FNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLN 139 (520)
T ss_dssp TCTTCCEEECCSSC-CCEEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSC
T ss_pred cccCCCEEecCCCc-eeecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccce
Confidence 99999999999999 9999986 89999999999999 554 67899999999999999994 433 346677777
Q ss_pred -CcCCceEecC
Q 048084 698 -RGVTKFVVGG 707 (967)
Q Consensus 698 -~~L~~~~~~~ 707 (967)
+.|++..+..
T Consensus 140 L~~L~l~~n~l 150 (520)
T 2z7x_B 140 ISKVLLVLGET 150 (520)
T ss_dssp EEEEEEEECTT
T ss_pred eeEEEeecccc
Confidence 8888777655
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=246.42 Aligned_cols=146 Identities=22% Similarity=0.125 Sum_probs=117.3
Q ss_pred EEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-cccccCCC
Q 048084 546 LALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEKLLH 624 (967)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~l~~ 624 (967)
........+|.. + .+++++|++++|. +..+.+..|.++++|++|+|+ + +.+..++ ..++++++
T Consensus 14 c~~~~l~~ip~~----l--~~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-----~--n~i~~i~~~~~~~l~~ 77 (570)
T 2z63_A 14 CMELNFYKIPDN----L--PFSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-----R--CEIQTIEDGAYQSLSH 77 (570)
T ss_dssp CCSSCCSSCCSS----S--CSSCCEEECCSCC---CCEECTTTTTTCSSCCEEECT-----T--CCCCEECTTTTTTCTT
T ss_pred eCCCCccccCCC----c--cccccEEEccCCc---cCccChhHhhCCCCceEEECC-----C--CcCCccCcccccCchh
Confidence 334455566632 2 2579999999998 445567779999999999999 7 5577664 56899999
Q ss_pred CcEEEccCCCCccccc-hHHhccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCcccc-ccccCCCCCCCCCcCC
Q 048084 625 LKYLNLFCQREIEKLP-ETLCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTESLR-YLPVGIEELIRLRGVT 701 (967)
Q Consensus 625 L~~L~Ls~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~ 701 (967)
|++|+|++|. +..+| ..+.++++|++|++++|. ++.+|. .++++++|++|++++|.... .+|..++++++|+.|+
T Consensus 78 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 78 LSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp CCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCEEeCcCCc-CCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence 9999999999 88776 679999999999999998 777765 58999999999999994333 3688899999999998
Q ss_pred ceEecCcC
Q 048084 702 KFVVGGGY 709 (967)
Q Consensus 702 ~~~~~~~~ 709 (967)
+..+....
T Consensus 156 l~~n~l~~ 163 (570)
T 2z63_A 156 LSSNKIQS 163 (570)
T ss_dssp CTTSCCCE
T ss_pred CcCCccce
Confidence 87665443
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.1e-22 Score=232.69 Aligned_cols=319 Identities=17% Similarity=0.183 Sum_probs=203.6
Q ss_pred cCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchH
Q 048084 563 KGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPET 642 (967)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~ 642 (967)
..+++|++|.+.++... . +|. +..+++|++|+|+ + +.+..+|. ++++++|++|++++|. +..++.
T Consensus 43 ~~l~~l~~L~l~~~~i~---~-l~~-~~~l~~L~~L~Ls-----~--n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~- 107 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK---S-IDG-VEYLNNLTQINFS-----N--NQLTDITP-LKNLTKLVDILMNNNQ-IADITP- 107 (466)
T ss_dssp HHHHTCCEEECCSSCCC---C-CTT-GGGCTTCCEEECC-----S--SCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-
T ss_pred hHhccccEEecCCCCCc---c-Ccc-hhhhcCCCEEECC-----C--CccCCchh-hhccccCCEEECCCCc-cccChh-
Confidence 34788999999999743 3 344 8889999999999 7 56777876 9999999999999999 888887
Q ss_pred HhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCC
Q 048084 643 LCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLN 722 (967)
Q Consensus 643 ~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 722 (967)
+.++++|++|++++|. ++.+|. +.++++|++|++++| .+..++ .+..+++|+.|.+.. .. ..+..+..++
T Consensus 108 ~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~-~~-----~~~~~~~~l~ 177 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGN-QV-----TDLKPLANLT 177 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSEEEEEE-SC-----CCCGGGTTCT
T ss_pred hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccEeecCC-cc-----cCchhhccCC
Confidence 9999999999999998 877765 899999999999999 566665 477888888887642 21 1233466667
Q ss_pred CCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccc-cC---CCCchhhHHHHhhhCCCCCCCCeEEE
Q 048084 723 LLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQA-GR---RENEEDEDERLLEALGPPSNLKELRI 798 (967)
Q Consensus 723 ~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l~~~~~L~~L~L 798 (967)
.|+.|.+.+..... . ..+..+++|+.|++++|.+........ .. ......... ....+..+++|++|++
T Consensus 178 ~L~~L~l~~n~l~~-~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 178 TLERLDISSNKVSD-I-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDL 250 (466)
T ss_dssp TCCEEECCSSCCCC-C-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEEC
T ss_pred CCCEEECcCCcCCC-C-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc-cchhhhcCCCCCEEEC
Confidence 77777766533211 1 235667778888887775433211000 00 000000000 0012333445555555
Q ss_pred eeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCccccCCCCCCCCccccccccc
Q 048084 799 DEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKL 878 (967)
Q Consensus 799 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 878 (967)
++|.+.. .++ +..+++|+.|++++|.+.. ++.+..+++|+.|++++|. + .+.. .+..+++|
T Consensus 251 ~~n~l~~--~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l-------~~~~------~~~~l~~L 311 (466)
T 1o6v_A 251 ANNQISN--LAP--LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQ-L-------EDIS------PISNLKNL 311 (466)
T ss_dssp CSSCCCC--CGG--GTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-C-------SCCG------GGGGCTTC
T ss_pred CCCcccc--chh--hhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCc-c-------cCch------hhcCCCCC
Confidence 5554443 211 4455555555555553322 2234455555555555532 1 1111 13356677
Q ss_pred ccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCCcc
Q 048084 879 KLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 879 ~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 942 (967)
+.|++++| .+..+. .+..+++|+.|++++| .++.++ .+..+++|+.|++++|+.
T Consensus 312 ~~L~L~~n-~l~~~~-------~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 312 TYLTLYFN-NISDIS-------PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp SEEECCSS-CCSCCG-------GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred CEEECcCC-cCCCch-------hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 77777766 343322 2457889999999988 666665 567789999999998864
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=9.6e-23 Score=233.18 Aligned_cols=348 Identities=13% Similarity=0.065 Sum_probs=240.8
Q ss_pred EEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccc-cc-cccccc
Q 048084 544 LMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIK-EI-PTNIEK 621 (967)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~-~l-p~~i~~ 621 (967)
+...+..+..+|. -.++|++|++++|. +..+.|..|.++++|++|+|+ + +.+. .+ +..+.+
T Consensus 15 ~~c~~~~l~~lp~-------l~~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~-----~--n~~~~~i~~~~~~~ 77 (455)
T 3v47_A 15 AICINRGLHQVPE-------LPAHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVE-----Q--QTPGLVIRNNTFRG 77 (455)
T ss_dssp EECCSSCCSSCCC-------CCTTCCEEECCSSC---CCEECTTTTSSCTTCCEEECC-----C--CSTTCEECTTTTTT
T ss_pred cCcCCCCcccCCC-------CCCccCEEEecCCc---cCcCChhHhccCccccEEECc-----C--CcccceECcccccc
Confidence 3444455666662 23789999999998 555568889999999999999 6 4343 44 567899
Q ss_pred CCCCcEEEccCCCCcccc-chHHhccCCCCEEecCCCCCCcccCcc--ccccccccEEecCCCccccccccC-CCCCCCC
Q 048084 622 LLHLKYLNLFCQREIEKL-PETLCELYNLERLNVSGCRNLRELPQG--IGKLRKLMYLYNDRTESLRYLPVG-IEELIRL 697 (967)
Q Consensus 622 l~~L~~L~Ls~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L 697 (967)
+++|++|+|++|. +..+ |..+.++++|++|+|++|......|.. +..+++|++|++++|......|.. +..+++|
T Consensus 78 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 78 LSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp CTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred cccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 9999999999999 7765 778999999999999999833345554 889999999999999443334555 7899999
Q ss_pred CcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCC----hhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCC
Q 048084 698 RGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSD----AGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRR 773 (967)
Q Consensus 698 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~----~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 773 (967)
+.|++..+.........+..+.. ..|+.+.+........ ........+..+++|+.|++++|.+..
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--------- 226 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE--------- 226 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTT-CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH---------
T ss_pred cEEeCCCCcccccChhhhhcccc-ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc---------
Confidence 99988877665533334433321 2334444443221110 111122334466889999999984322
Q ss_pred CCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCC--------CCchhh--cccccceeEecCccCCCCCCC-CCCCCCc
Q 048084 774 ENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVV--------PINWIM--SLTNLRDLSLIMWRNREHLPP-LGKLPSL 842 (967)
Q Consensus 774 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~--------~~~~l~--~l~~L~~L~L~~~~~~~~l~~-l~~l~~L 842 (967)
............++|+.|++++|....... .+..+. .+++|+.|++++|.+....|. ++.+++|
T Consensus 227 -----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 301 (455)
T 3v47_A 227 -----SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301 (455)
T ss_dssp -----HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred -----cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC
Confidence 111222222345789999999875443111 011222 247899999999987776665 8899999
Q ss_pred cceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCC
Q 048084 843 EDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKAL 922 (967)
Q Consensus 843 ~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 922 (967)
++|+|++|. ++.++.. .+..+++|+.|+++++ .+..+ .+..+..+++|+.|++++|......
T Consensus 302 ~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 302 EQLTLAQNE-INKIDDN-----------AFWGLTHLLKLNLSQN-FLGSI-----DSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp CEEECTTSC-CCEECTT-----------TTTTCTTCCEEECCSS-CCCEE-----CGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CEEECCCCc-ccccChh-----------HhcCcccCCEEECCCC-ccCCc-----ChhHhcCcccCCEEECCCCcccccC
Confidence 999999865 3332211 1347899999999998 34433 2345678999999999999443344
Q ss_pred CcCCCCCCCcCeEEEcCCcc
Q 048084 923 PDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 923 p~~~~~l~~L~~L~l~~c~~ 942 (967)
|..+..+++|++|++++|..
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCC
T ss_pred hhhccccccccEEECCCCcc
Confidence 77889999999999999964
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=250.12 Aligned_cols=332 Identities=15% Similarity=0.090 Sum_probs=204.7
Q ss_pred EEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-cccccc
Q 048084 543 HLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIEK 621 (967)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~~ 621 (967)
.+....+....+| . -.++|++|++++|. +..+.+..|.++++|++|+|+ +| +.+..+ |..+++
T Consensus 8 ~~dcs~~~L~~vP----~---lp~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs-----~n-~~~~~i~~~~f~~ 71 (844)
T 3j0a_A 8 IAFYRFCNLTQVP----Q---VLNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELG-----SQ-YTPLTIDKEAFRN 71 (844)
T ss_dssp EEEESCCCSSCCC----S---SCTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEEC-----TT-CCCCEECTTTTSS
T ss_pred EEEccCCCCCCCC----C---CCCCcCEEECCCCc---CCccChhHCcccccCeEEeCC-----CC-CCccccCHHHhcC
Confidence 3445556667776 2 45799999999998 555678889999999999999 63 235566 678999
Q ss_pred CCCCcEEEccCCCCcccc-chHHhccCCCCEEecCCCCCCcccCcc--ccccccccEEecCCCccccccc-cCCCCCCCC
Q 048084 622 LLHLKYLNLFCQREIEKL-PETLCELYNLERLNVSGCRNLRELPQG--IGKLRKLMYLYNDRTESLRYLP-VGIEELIRL 697 (967)
Q Consensus 622 l~~L~~L~Ls~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L 697 (967)
+++|++|+|++|. +..+ |..+.++++|++|+|++|.....+|.. +.++++|++|++++|......+ ..++++++|
T Consensus 72 L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 72 LPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp CTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 9999999999999 7766 778999999999999999844446655 8999999999999994433323 468999999
Q ss_pred CcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCC------CCCcEEEEeecCCCCCccccc
Q 048084 698 RGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKK------NLFKLGLHFCHSRDGDEEQAG 771 (967)
Q Consensus 698 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~ 771 (967)
+.|++..+.........+..+.. +.|+.|.+........ ....+..+. +|+.|++++|.+.........
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~-~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQG-KTLSFFSLAANSLYSR----VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHH-CSSCCCEECCSBSCCC----CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred CEEECCCCcCCeeCHHHcccccC-CccceEECCCCccccc----cccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 99998877665433344444422 5666666655322111 111122222 488899888854332211000
Q ss_pred CC-C------------------CchhhHHHHhhhCCC--CCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCC
Q 048084 772 RR-E------------------NEEDEDERLLEALGP--PSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNR 830 (967)
Q Consensus 772 ~~-~------------------~~~~~~~~~~~~l~~--~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 830 (967)
.. . ............+.. +++|+.|+|++|.+.. .++..+..+++|+.|+|++|.+.
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~ 303 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKIN 303 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE--ECSCCSSSCCCCCEEEEESCCCC
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc--cChhhhhcCCCCCEEECCCCcCC
Confidence 00 0 000000000111222 2567777777776655 44566667777777777777555
Q ss_pred CCCCC-CCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccc
Q 048084 831 EHLPP-LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLS 909 (967)
Q Consensus 831 ~~l~~-l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~ 909 (967)
...+. +..+++|++|+|++|. ++.+ .+ ..+..+++|+.|+++++ .+..+. +..+..+++|+
T Consensus 304 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~-------~~----~~~~~l~~L~~L~L~~N-~i~~~~-----~~~~~~l~~L~ 365 (844)
T 3j0a_A 304 KIADEAFYGLDNLQVLNLSYNL-LGEL-------YS----SNFYGLPKVAYIDLQKN-HIAIIQ-----DQTFKFLEKLQ 365 (844)
T ss_dssp EECTTTTTTCSSCCEEEEESCC-CSCC-------CS----CSCSSCTTCCEEECCSC-CCCCCC-----SSCSCSCCCCC
T ss_pred CCChHHhcCCCCCCEEECCCCC-CCcc-------CH----HHhcCCCCCCEEECCCC-CCCccC-----hhhhcCCCCCC
Confidence 44443 6667777777777643 1111 11 11235666666666654 232221 11233455555
Q ss_pred eeeeccC
Q 048084 910 SLQILRC 916 (967)
Q Consensus 910 ~L~l~~c 916 (967)
.|++++|
T Consensus 366 ~L~Ls~N 372 (844)
T 3j0a_A 366 TLDLRDN 372 (844)
T ss_dssp EEEEETC
T ss_pred EEECCCC
Confidence 5555555
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=233.17 Aligned_cols=296 Identities=21% Similarity=0.186 Sum_probs=229.1
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc-
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT- 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~- 617 (967)
..++.+.+.++.+..++. ..|.++++|++|++++|. +..+.|..|.++++|++|+|+ + |.+..+|.
T Consensus 32 ~~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-----~--n~l~~~~~~ 98 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQ---DEFASFPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLR-----S--NRLKLIPLG 98 (477)
T ss_dssp TTCSEEECCSSCCCEECT---TTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECC-----S--SCCCSCCTT
T ss_pred CCCcEEECCCCccceECH---hHccCCCCCCEEECCCCc---cCEeChhhhhCCccCCEEECC-----C--CcCCccCcc
Confidence 688999999999887753 578999999999999998 555678889999999999999 7 66888875
Q ss_pred ccccCCCCcEEEccCCCCcccc-chHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCcccccccc-CCCCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKL-PETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPV-GIEELI 695 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~ 695 (967)
.+.++++|++|+|++|. +..+ |..+.++++|++|+|++|......|..+.++++|++|++++| .+..+|. .+..++
T Consensus 99 ~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 99 VFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLH 176 (477)
T ss_dssp SSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCT
T ss_pred cccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccC
Confidence 47899999999999999 7665 567899999999999999843444667999999999999999 5666664 478899
Q ss_pred CCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCC
Q 048084 696 RLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRREN 775 (967)
Q Consensus 696 ~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 775 (967)
+|+.|++..+....... ..+..++.|+.|.+.+...... .........+|+.|++++|.+....
T Consensus 177 ~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~--------- 240 (477)
T 2id5_A 177 GLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSITHCNLTAVP--------- 240 (477)
T ss_dssp TCCEEEEESCCCCEECT---TCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCSEEEEESSCCCSCC---------
T ss_pred CCcEEeCCCCcCcEeCh---hhcccCcccceeeCCCCccccc----cCcccccCccccEEECcCCcccccC---------
Confidence 99999888776554222 2355667777778776433221 1122233458999999999544321
Q ss_pred chhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeeccccCce
Q 048084 776 EEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGMQSVK 854 (967)
Q Consensus 776 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c~~l~ 854 (967)
...+..+++|+.|+|++|.+.. +++..+..+++|+.|+|++|.+....|. +..+++|+.|+|+++. ++
T Consensus 241 --------~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~ 309 (477)
T 2id5_A 241 --------YLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LT 309 (477)
T ss_dssp --------HHHHTTCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CS
T ss_pred --------HHHhcCccccCeeECCCCcCCc--cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-Cc
Confidence 1346778999999999999877 6677888999999999999977665554 8899999999999853 43
Q ss_pred EeCccccCCCCCCCCcccccccccccccccccc
Q 048084 855 RVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMK 887 (967)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 887 (967)
.++... +..+++|+.|++++++
T Consensus 310 ~~~~~~-----------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 310 TLEESV-----------FHSVGNLETLILDSNP 331 (477)
T ss_dssp CCCGGG-----------BSCGGGCCEEECCSSC
T ss_pred eeCHhH-----------cCCCcccCEEEccCCC
Confidence 333221 3368899999999875
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=5.1e-23 Score=229.88 Aligned_cols=303 Identities=15% Similarity=0.072 Sum_probs=232.2
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-c
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-T 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~ 617 (967)
.+++.+.+.++.+..+|. ..+..+++|++|++++|. +..+.+..|..+++|++|+|+ + +.+..++ .
T Consensus 45 ~~l~~l~l~~~~l~~l~~---~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-----~--n~l~~~~~~ 111 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPA---ALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-----F--NAIRYLPPH 111 (390)
T ss_dssp CCCSEEEEESCEESEECT---HHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-----S--SCCCCCCTT
T ss_pred CCceEEEecCCchhhCCh---hHhcccccCcEEECCCCc---ccccChhhccCCCCcCEEECC-----C--CCCCcCCHH
Confidence 578999999999888874 346889999999999998 455567789999999999999 6 5677664 5
Q ss_pred ccccCCCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCccc-CccccccccccEEecCCCccccccccCCCCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLREL-PQGIGKLRKLMYLYNDRTESLRYLPVGIEELI 695 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 695 (967)
.++++++|++|+|++|. +..+|.. +.++++|++|++++|. ++.+ |..+..+++|++|++++| .+..++ ++.++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~l~ 186 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIP 186 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS-CCSBCC--GGGCT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC-cCCccc--ccccc
Confidence 58999999999999999 9999976 5899999999999998 5555 456899999999999999 555543 56677
Q ss_pred CCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCC
Q 048084 696 RLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRREN 775 (967)
Q Consensus 696 ~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 775 (967)
+|+.|++..+. +..+.....|+.|.+.+.... .. .....++|+.|++++|.+..
T Consensus 187 ~L~~L~l~~n~--------l~~~~~~~~L~~L~l~~n~l~----~~---~~~~~~~L~~L~l~~n~l~~----------- 240 (390)
T 3o6n_A 187 SLFHANVSYNL--------LSTLAIPIAVEELDASHNSIN----VV---RGPVNVELTILKLQHNNLTD----------- 240 (390)
T ss_dssp TCSEEECCSSC--------CSEEECCSSCSEEECCSSCCC----EE---ECCCCSSCCEEECCSSCCCC-----------
T ss_pred ccceeeccccc--------ccccCCCCcceEEECCCCeee----ec---cccccccccEEECCCCCCcc-----------
Confidence 78777665443 333444456666666543211 00 11234789999999995432
Q ss_pred chhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceE
Q 048084 776 EEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKR 855 (967)
Q Consensus 776 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~ 855 (967)
...+..+++|++|++++|.+.. .+|..+..+++|+.|+|++|.+.........+++|+.|+|++|. ++.
T Consensus 241 --------~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~ 309 (390)
T 3o6n_A 241 --------TAWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLH 309 (390)
T ss_dssp --------CGGGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCC
T ss_pred --------cHHHcCCCCccEEECCCCcCCC--cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-cee
Confidence 1346678999999999998877 55788999999999999999665433336789999999999964 433
Q ss_pred eCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCc
Q 048084 856 VGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCL 917 (967)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 917 (967)
++.. +..+++|+.|++++++ ++.++ +..+++|+.|++++|+
T Consensus 310 ~~~~------------~~~l~~L~~L~L~~N~-i~~~~--------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 310 VERN------------QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CGGG------------HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSC
T ss_pred cCcc------------ccccCcCCEEECCCCc-cceeC--------chhhccCCEEEcCCCC
Confidence 3322 3368999999999984 65553 3468999999999995
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=9.5e-23 Score=239.32 Aligned_cols=195 Identities=17% Similarity=0.078 Sum_probs=147.2
Q ss_pred EEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-cccccCC
Q 048084 545 MLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEKLL 623 (967)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~l~ 623 (967)
....+.+..+|.. + .++|++|++++|. +..+.|..|.++++|++|+|+ + +.+..++ ..+++++
T Consensus 11 ~~~~~~l~~ip~~----~--~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-----~--n~i~~~~~~~~~~l~ 74 (549)
T 2z81_A 11 DGRSRSFTSIPSG----L--TAAMKSLDLSFNK---ITYIGHGDLRACANLQVLILK-----S--SRINTIEGDAFYSLG 74 (549)
T ss_dssp ECTTSCCSSCCSC----C--CTTCCEEECCSSC---CCEECSSTTSSCTTCCEEECT-----T--SCCCEECTTTTTTCT
T ss_pred ECCCCcccccccc----C--CCCccEEECcCCc---cCccChhhhhcCCcccEEECC-----C--CCcCccChhhccccc
Confidence 3344566677742 2 3799999999998 455567789999999999999 6 5566665 6799999
Q ss_pred CCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCc--ccCccccccccccEEecCCCccccccc-cCCCCCCCCCc
Q 048084 624 HLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLR--ELPQGIGKLRKLMYLYNDRTESLRYLP-VGIEELIRLRG 699 (967)
Q Consensus 624 ~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~ 699 (967)
+|++|+|++|. +..+|.. +.++++|++|++++|. ++ ..|..+.++++|++|++++|..+..+| ..+..+++|+.
T Consensus 75 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 75 SLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp TCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 99999999999 8887764 9999999999999998 65 456789999999999999996577776 46899999999
Q ss_pred CCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCC
Q 048084 700 VTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRD 764 (967)
Q Consensus 700 L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 764 (967)
|++..+....... ..+..++.|+.|.+..... .......+..+++|+.|++++|.+..
T Consensus 153 L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~~----~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 153 LEIKALSLRNYQS---QSLKSIRDIHHLTLHLSES----AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEEETTCCEECT---TTTTTCSEEEEEEEECSBS----TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred eeccCCcccccCh---hhhhccccCceEecccCcc----cccchhhHhhcccccEEEccCCcccc
Confidence 9998876654222 3344555566666654322 11222234457888888888887654
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=4.5e-22 Score=239.87 Aligned_cols=269 Identities=17% Similarity=0.097 Sum_probs=177.7
Q ss_pred EEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-ccccccC
Q 048084 544 LMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIEKL 622 (967)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~~l 622 (967)
+...+..+..+|. .+. ++|++|++++|. +..+.+..|.++++|++|+|+ + +.+..+ |..++++
T Consensus 9 ~~cs~~~L~~ip~----~~~--~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-----~--n~l~~~~~~~~~~l 72 (680)
T 1ziw_A 9 ADCSHLKLTQVPD----DLP--TNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVG-----F--NTISKLEPELCQKL 72 (680)
T ss_dssp EECCSSCCSSCCS----CSC--TTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECC-----S--SCCCCCCTTHHHHC
T ss_pred eECCCCCcccccc----ccC--CCCcEEECCCCC---CCCcCHHHHhCCCcCcEEECC-----C--CccCccCHHHHhcc
Confidence 4555566677773 222 789999999998 555567779999999999999 6 556655 6778999
Q ss_pred CCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccC-ccccccccccEEecCCCccccccccCCCCCCCCCcC
Q 048084 623 LHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGV 700 (967)
Q Consensus 623 ~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 700 (967)
++|++|+|++|. +..+|. .+.++++|++|++++|. ++.+| ..++++++|++|++++|......|..++.+++|+.|
T Consensus 73 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 73 PMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 999999999998 999987 59999999999999998 66665 679999999999999995544556678899999999
Q ss_pred CceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhH
Q 048084 701 TKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDED 780 (967)
Q Consensus 701 ~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 780 (967)
++..+.........+. ...++.|+.|.+.+... ....+..+..+.+|+.|.+..+.+. ....
T Consensus 151 ~L~~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~l~~~~l~-------------~~~~ 212 (680)
T 1ziw_A 151 LLSNNKIQALKSEELD-IFANSSLKKLELSSNQI----KEFSPGCFHAIGRLFGLFLNNVQLG-------------PSLT 212 (680)
T ss_dssp ECCSSCCCCBCHHHHG-GGTTCEESEEECTTCCC----CCBCTTGGGGSSEECEEECTTCCCH-------------HHHH
T ss_pred EccCCcccccCHHHhh-ccccccccEEECCCCcc----cccChhhhhhhhhhhhhhccccccC-------------hhhH
Confidence 8877654432211111 11234555566554211 1122334555666776666555211 0111
Q ss_pred HHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccc--cceeEecCccCCCCCCC-CCCCCCccceeecccc
Q 048084 781 ERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTN--LRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGMQ 851 (967)
Q Consensus 781 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~--L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c~ 851 (967)
......+ ..++|++|++++|.... .++.++..++. |+.|++++|.+....+. ++.+++|++|+++++.
T Consensus 213 ~~~~~~l-~~~~L~~L~L~~n~l~~--~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 213 EKLCLEL-ANTSIRNLSLSNSQLST--TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp HHHHHHH-TTSCCCEEECTTSCCCE--ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred HHHHHHh-hhccccEEEccCCcccc--cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 1111111 23566666666666554 43555555543 66666666654443333 5666666666666643
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=8.7e-23 Score=240.76 Aligned_cols=305 Identities=15% Similarity=0.058 Sum_probs=231.8
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-c
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-T 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~ 617 (967)
..++.+.+.++.+..+|. ..+.++++|++|++++|. +..+.+..|..+++|++|+|+ + |.+..+| .
T Consensus 51 ~~l~~l~l~~~~l~~lp~---~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-----~--n~l~~~~~~ 117 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPA---ALLDSFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-----F--NAIRYLPPH 117 (597)
T ss_dssp CCCSEEEESSCEESEECT---HHHHHCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-----S--SCCCCCCTT
T ss_pred CCceEEEeeCCCCCCcCH---HHHccCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECC-----C--CcCCCCCHH
Confidence 567888898888887774 446889999999999998 555567789999999999999 6 5577675 4
Q ss_pred ccccCCCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIR 696 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 696 (967)
.++++++|++|+|++|. +..+|.. +.++++|++|+|++|......|..+.++++|++|++++| .+..++ ++.+++
T Consensus 118 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTT
T ss_pred HHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhh
Confidence 57999999999999999 9999876 589999999999999843444557999999999999999 555554 566777
Q ss_pred CCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCc
Q 048084 697 LRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENE 776 (967)
Q Consensus 697 L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 776 (967)
|+.|++..+. +..+.....|+.|.+.+..... . . .....+|+.|++++|.+..
T Consensus 194 L~~L~l~~n~--------l~~l~~~~~L~~L~ls~n~l~~----~-~--~~~~~~L~~L~L~~n~l~~------------ 246 (597)
T 3oja_B 194 LFHANVSYNL--------LSTLAIPIAVEELDASHNSINV----V-R--GPVNVELTILKLQHNNLTD------------ 246 (597)
T ss_dssp CSEEECCSSC--------CSEEECCTTCSEEECCSSCCCE----E-E--CSCCSCCCEEECCSSCCCC------------
T ss_pred hhhhhcccCc--------cccccCCchhheeeccCCcccc----c-c--cccCCCCCEEECCCCCCCC------------
Confidence 8877665443 3334445566666665432110 0 0 1123689999999995432
Q ss_pred hhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEe
Q 048084 777 EDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRV 856 (967)
Q Consensus 777 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~ 856 (967)
+..+..+++|+.|+|++|.+.. .+|..+..+++|+.|+|++|.+....+.+..+|+|+.|+|++|. +..+
T Consensus 247 -------~~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i 316 (597)
T 3oja_B 247 -------TAWLLNYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHV 316 (597)
T ss_dssp -------CGGGGGCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCC
T ss_pred -------ChhhccCCCCCEEECCCCccCC--CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCcc
Confidence 2456678999999999999877 65788999999999999999665533336779999999999964 3333
Q ss_pred CccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCcc
Q 048084 857 GNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLK 918 (967)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 918 (967)
+.. +..+++|+.|++++|. +..++ +..+++|+.|++++|+.
T Consensus 317 ~~~------------~~~l~~L~~L~L~~N~-l~~~~--------~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 317 ERN------------QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp GGG------------HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCE
T ss_pred Ccc------------cccCCCCCEEECCCCC-CCCcC--------hhhcCCCCEEEeeCCCC
Confidence 322 3478999999999984 55443 34789999999999863
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=7.6e-22 Score=236.48 Aligned_cols=369 Identities=15% Similarity=0.078 Sum_probs=233.6
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc-
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT- 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~- 617 (967)
..+++|.+++|.+..++. ..|.++++|++|+|++|. +..+.+..|.++++|++|+|+ + |.+..+|.
T Consensus 52 ~~~~~LdLs~N~i~~l~~---~~f~~l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls-----~--N~l~~l~~~ 118 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-----G--NPIQSLALG 118 (635)
T ss_dssp TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-----T--CCCCEECGG
T ss_pred cCCCEEEeeCCCCCCCCH---HHHhCCCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEcc-----C--CcCCCCCHH
Confidence 679999999999998874 578999999999999998 556678889999999999999 7 67888874
Q ss_pred ccccCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCc--ccCccccccccccEEecCCCcccccc-ccCCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLR--ELPQGIGKLRKLMYLYNDRTESLRYL-PVGIEE 693 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~~~~~-p~~~~~ 693 (967)
.|.++++|++|+|++|. ++.+|. .++++++|++|+|++|. ++ .+|..+..+++|++|++++|. +..+ |..+..
T Consensus 119 ~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~ 195 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 195 (635)
T ss_dssp GGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHH
T ss_pred HhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc-ccccccccccc
Confidence 57899999999999999 888885 58999999999999998 54 457788999999999999984 3332 222222
Q ss_pred CCCCCcC-------------------------------------------------CceEecCc---C------CC----
Q 048084 694 LIRLRGV-------------------------------------------------TKFVVGGG---Y------DR---- 711 (967)
Q Consensus 694 l~~L~~L-------------------------------------------------~~~~~~~~---~------~~---- 711 (967)
+.+++.+ ........ . ..
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 2111100 00000000 0 00
Q ss_pred -----------------------cc-------------------CccccccCCCCCCeEEcCcCC----------CC---
Q 048084 712 -----------------------AC-------------------SLGSLKKLNLLRECWICGLGG----------VS--- 736 (967)
Q Consensus 712 -----------------------~~-------------------~l~~l~~L~~L~~L~i~~l~~----------~~--- 736 (967)
.. .+..+.....|+.|.+.+... ..
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~ 355 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 355 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEE
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcc
Confidence 00 000011111122222211100 00
Q ss_pred --ChhhhHHhhccCCCCCCcEEEEeecCCCC--------------------------CcccccCCCC-------chhhHH
Q 048084 737 --DAGEARRAELEKKKNLFKLGLHFCHSRDG--------------------------DEEQAGRREN-------EEDEDE 781 (967)
Q Consensus 737 --~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--------------------------~~~~~~~~~~-------~~~~~~ 781 (967)
............+++|+.|+++.|.+... ...+...... ......
T Consensus 356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST
T ss_pred cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc
Confidence 00000011223445566666555432110 0000000000 000000
Q ss_pred HHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCC-CCC-CCCCCCccceeeccccCceEeCcc
Q 048084 782 RLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREH-LPP-LGKLPSLEDLKIQGMQSVKRVGNE 859 (967)
Q Consensus 782 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-l~~-l~~l~~L~~L~L~~c~~l~~~~~~ 859 (967)
.....+..+++++.++++.|.... .++..+..+++|+.|++++|..... .|. +..+++|++|+|++|. ++.++..
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~ 512 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT 512 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT
T ss_pred cccccccccccccccccccccccc--ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChH
Confidence 112234556778888888777665 5466777888999999998865543 343 7889999999999864 4444321
Q ss_pred ccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCCC-CCcCeEEEc
Q 048084 860 FLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQK-TTLQELWIS 938 (967)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l-~~L~~L~l~ 938 (967)
.+.++++|+.|+|+++ +|+.+. +..+..+++|+.|++++|......|..+..+ ++|+.|+|+
T Consensus 513 -----------~f~~l~~L~~L~Ls~N-~l~~l~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 513 -----------AFNSLSSLQVLNMSHN-NFFSLD-----TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp -----------TTTTCTTCCEEECTTS-CCCBCC-----CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred -----------HHcCCCCCCEEECCCC-cCCCCC-----hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 1347899999999997 455543 3356789999999999994444446677777 689999999
Q ss_pred CCcch
Q 048084 939 GCPIL 943 (967)
Q Consensus 939 ~c~~l 943 (967)
+||..
T Consensus 576 ~Np~~ 580 (635)
T 4g8a_A 576 QNDFA 580 (635)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 99864
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=8.3e-22 Score=223.08 Aligned_cols=304 Identities=19% Similarity=0.155 Sum_probs=228.7
Q ss_pred ccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCcccc
Q 048084 560 DNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKL 639 (967)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~l 639 (967)
..+.++++|++|++++|.+ .. .| .+..+++|++|+|+ + +.+..+| ++.+++|++|++++|. ++.+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l---~~-~~-~l~~l~~L~~L~Ls-----~--n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~ 100 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSI---TD-MT-GIEKLTGLTKLICT-----S--NNITTLD--LSQNTNLTYLACDSNK-LTNL 100 (457)
T ss_dssp EEHHHHTTCCEEECCSSCC---CC-CT-TGGGCTTCSEEECC-----S--SCCSCCC--CTTCTTCSEEECCSSC-CSCC
T ss_pred cChhHcCCCCEEEccCCCc---cc-Ch-hhcccCCCCEEEcc-----C--CcCCeEc--cccCCCCCEEECcCCC-Ccee
Confidence 3567899999999999984 33 34 48999999999999 6 5677776 8899999999999999 8888
Q ss_pred chHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccc
Q 048084 640 PETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLK 719 (967)
Q Consensus 640 p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~ 719 (967)
| +.++++|++|++++|. ++.+| ++.+++|++|++++| .+..++ ++.+++|+.|++..+.... .+ .+.
T Consensus 101 ~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~----~~-~~~ 167 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKIT----KL-DVT 167 (457)
T ss_dssp C--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCC----CC-CCT
T ss_pred e--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccc----cc-ccc
Confidence 6 8899999999999998 77776 899999999999999 566664 7788888888876664322 11 355
Q ss_pred cCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEe
Q 048084 720 KLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRID 799 (967)
Q Consensus 720 ~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 799 (967)
.++.|+.|.+.+..-. . . .+..+++|+.|++++|.+... .+..+++|+.|+++
T Consensus 168 ~l~~L~~L~ls~n~l~-~---l---~l~~l~~L~~L~l~~N~l~~~--------------------~l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKIT-E---L---DVSQNKLLNRLNCDTNNITKL--------------------DLNQNIQLTFLDCS 220 (457)
T ss_dssp TCTTCCEEECCSSCCC-C---C---CCTTCTTCCEEECCSSCCSCC--------------------CCTTCTTCSEEECC
T ss_pred cCCcCCEEECCCCccc-e---e---ccccCCCCCEEECcCCcCCee--------------------ccccCCCCCEEECc
Confidence 6677777776653221 1 1 267889999999999954321 26678999999999
Q ss_pred eeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceee----------ccccCceEeCccccCCCCCCCC
Q 048084 800 EYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKI----------QGMQSVKRVGNEFLGVESDTDG 869 (967)
Q Consensus 800 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L----------~~c~~l~~~~~~~~~~~~~~~~ 869 (967)
+|.+.. + | +..+++|+.|++++|.+.. +| ++.+++|+.|++ ++|..+..++
T Consensus 221 ~N~l~~--i-p--~~~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~------------ 281 (457)
T 3bz5_A 221 SNKLTE--I-D--VTPLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ------------ 281 (457)
T ss_dssp SSCCSC--C-C--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE------------
T ss_pred CCcccc--c-C--ccccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc------------
Confidence 999887 6 4 6789999999999996655 33 445555555544 4443332222
Q ss_pred cccccccccccccccccccccccccccc--cccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCCcc
Q 048084 870 SSVIAFPKLKLLRFDNMKELEELDFRTA--IKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 870 ~~~~~~~~L~~L~l~~~~~L~~l~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 942 (967)
...+++|+.|++++|+.+..++.... ..-.+..+++|+.|++++| .++.++ +..+++|+.|++++|..
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred --ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence 23689999999999976666553211 0002446789999999998 677775 78899999999999864
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=4.3e-22 Score=215.55 Aligned_cols=232 Identities=24% Similarity=0.291 Sum_probs=164.0
Q ss_pred cCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCcccccc
Q 048084 591 KLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKL 670 (967)
Q Consensus 591 ~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l 670 (967)
...+++.|+|+ + +.+..+|..++++++|++|+|++|. +..+|..+.++++|++|+|++|. ++.+|..+.++
T Consensus 79 ~~~~l~~L~L~-----~--n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELR-----S--VPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEE-----S--SCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred cccceeEEEcc-----C--CCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 45788999998 6 6678889889999999999999998 88999889999999999999998 77899999999
Q ss_pred ccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCC
Q 048084 671 RKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKK 750 (967)
Q Consensus 671 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~ 750 (967)
++|++|++++|..+..+|..+.... ....+..++
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~----------------------------------------------~~~~~~~l~ 183 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTD----------------------------------------------ASGEHQGLV 183 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-----------------------------------------------CCCEEEST
T ss_pred cCCCEEECCCCCCccccChhHhhcc----------------------------------------------chhhhccCC
Confidence 9999999999866666665432200 001134456
Q ss_pred CCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCC
Q 048084 751 NLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNR 830 (967)
Q Consensus 751 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 830 (967)
+|+.|++++|.+. .++..+..+++|++|+|++|.+.. + |..+..+++|+.|+|++|...
T Consensus 184 ~L~~L~L~~n~l~------------------~lp~~l~~l~~L~~L~L~~N~l~~--l-~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 184 NLQSLRLEWTGIR------------------SLPASIANLQNLKSLKIRNSPLSA--L-GPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp TCCEEEEEEECCC------------------CCCGGGGGCTTCCEEEEESSCCCC--C-CGGGGGCTTCCEEECTTCTTC
T ss_pred CCCEEECcCCCcC------------------cchHhhcCCCCCCEEEccCCCCCc--C-chhhccCCCCCEEECcCCcch
Confidence 6777777777432 123345556667777777666665 5 445666677777777766665
Q ss_pred CCCCC-CCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccc
Q 048084 831 EHLPP-LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLS 909 (967)
Q Consensus 831 ~~l~~-l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~ 909 (967)
..+|. ++.+++|+.|+|++|..+ ..++ ..+..+++|+
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~------------------------------------~~~p------~~~~~l~~L~ 280 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNL------------------------------------LTLP------LDIHRLTQLE 280 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTC------------------------------------CBCC------TTGGGCTTCC
T ss_pred hhhHHHhcCCCCCCEEECCCCCch------------------------------------hhcc------hhhhcCCCCC
Confidence 55554 555666666666654322 2221 1344677888
Q ss_pred eeeeccCccCcCCCcCCCCCCCcCeEEEcCC
Q 048084 910 SLQILRCLKLKALPDHLLQKTTLQELWISGC 940 (967)
Q Consensus 910 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 940 (967)
.|+|++|+.+..+|..+..+++|+.+++..+
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 8888888888888888888888888888754
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1e-21 Score=211.43 Aligned_cols=246 Identities=19% Similarity=0.150 Sum_probs=177.0
Q ss_pred ccEEEEEEEecCCCC---CCCcccccccCCCCccEEEecc-CCccchhccchhhhccCCcceEEEecccCccccccccc-
Q 048084 539 KKILHLMLALDRGAL---IPMPIWDNVKGLRGLRSLLVES-NEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIK- 613 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~- 613 (967)
.+++++.+.++.+.. +| ..+.++++|++|++++ |. +....|..|.++++|++|+|+ + +.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~----~~l~~l~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls-----~--n~l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP----SSLANLPYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYIT-----H--TNVSG 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC----GGGGGCTTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEEE-----E--ECCEE
T ss_pred ceEEEEECCCCCccCCcccC----hhHhCCCCCCeeeCCCCCc---ccccCChhHhcCCCCCEEECc-----C--CeeCC
Confidence 478888888888763 44 6778889999999985 65 334467778899999999998 5 5555
Q ss_pred ccccccccCCCCcEEEccCCCCcc-ccchHHhccCCCCEEecCCCCCCcccCccccccc-cccEEecCCCccccccccCC
Q 048084 614 EIPTNIEKLLHLKYLNLFCQREIE-KLPETLCELYNLERLNVSGCRNLRELPQGIGKLR-KLMYLYNDRTESLRYLPVGI 691 (967)
Q Consensus 614 ~lp~~i~~l~~L~~L~Ls~~~~i~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~l~~~~~~~~~p~~~ 691 (967)
.+|..++++++|++|+|++|. +. .+|..+..+++|++|++++|.....+|..+..++ +|++|++++|.....+|..+
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 678888889999999999988 66 7888888999999999999883348888888887 89999998885444666666
Q ss_pred CCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCccccc
Q 048084 692 EELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAG 771 (967)
Q Consensus 692 ~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 771 (967)
..++ |+.|++..+.... ..+..+..+++|+.|++++|.+..
T Consensus 195 ~~l~-L~~L~Ls~N~l~~-------------------------------~~~~~~~~l~~L~~L~L~~N~l~~------- 235 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEG-------------------------------DASVLFGSDKNTQKIHLAKNSLAF------- 235 (313)
T ss_dssp GGCC-CSEEECCSSEEEE-------------------------------CCGGGCCTTSCCSEEECCSSEECC-------
T ss_pred hCCc-ccEEECcCCcccC-------------------------------cCCHHHhcCCCCCEEECCCCceee-------
Confidence 5554 5555443332111 112345566777788887774322
Q ss_pred CCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeecccc
Q 048084 772 RRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQ 851 (967)
Q Consensus 772 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~ 851 (967)
.+..+..+++|++|+|++|.+.. ..|.++..+++|+.|+|++|.+...+|..+.+++|+.|++++++
T Consensus 236 -----------~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 -----------DLGKVGLSKNLNGLDLRNNRIYG--TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp -----------BGGGCCCCTTCCEEECCSSCCEE--CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred -----------ecCcccccCCCCEEECcCCcccC--cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 12235566788888888877763 22677778888888888888776677777777778888777754
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=6.7e-21 Score=207.48 Aligned_cols=234 Identities=20% Similarity=0.182 Sum_probs=147.0
Q ss_pred EEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-cccc
Q 048084 541 ILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNI 619 (967)
Q Consensus 541 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i 619 (967)
++.+.+.++.+..+|.. + .++|++|++++|. +..+.+..|.++++|++|+|+ + +.+..+ |..+
T Consensus 35 l~~l~~~~~~l~~ip~~----~--~~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~-----~--n~l~~~~~~~~ 98 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKE----I--SPDTTLLDLQNND---ISELRKDDFKGLQHLYALVLV-----N--NKISKIHEKAF 98 (332)
T ss_dssp TTEEECCSSCCSSCCSC----C--CTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-----S--SCCCEECGGGS
T ss_pred CCEEECCCCCccccCCC----C--CCCCeEEECCCCc---CCccCHhHhhCCCCCcEEECC-----C--CccCccCHhHh
Confidence 44566666666666632 2 3678888888887 444456678888888888887 5 456555 6677
Q ss_pred ccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCccc--cccccCCCCCCC
Q 048084 620 EKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTESL--RYLPVGIEELIR 696 (967)
Q Consensus 620 ~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~ 696 (967)
+++++|++|+|++|. +..+|..+. ++|++|++++|. ++.+|. .+.++++|++|++++|... ...|..+..+ +
T Consensus 99 ~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 99 SPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp TTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred hCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 888888888888887 778876554 788888888887 666664 3777888888888887331 1233444444 5
Q ss_pred CCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCc
Q 048084 697 LRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENE 776 (967)
Q Consensus 697 L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 776 (967)
|+.|++..+.... ++ ..+ .++|++|++++|.+....
T Consensus 174 L~~L~l~~n~l~~-----------l~---------------------~~~--~~~L~~L~l~~n~i~~~~---------- 209 (332)
T 2ft3_A 174 LNYLRISEAKLTG-----------IP---------------------KDL--PETLNELHLDHNKIQAIE---------- 209 (332)
T ss_dssp CSCCBCCSSBCSS-----------CC---------------------SSS--CSSCSCCBCCSSCCCCCC----------
T ss_pred cCEEECcCCCCCc-----------cC---------------------ccc--cCCCCEEECCCCcCCccC----------
Confidence 5555443332211 00 000 145666666666432211
Q ss_pred hhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeecc
Q 048084 777 EDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQG 849 (967)
Q Consensus 777 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 849 (967)
+..+..+++|++|+|++|.+.. +++.++..+++|+.|++++|.+. .+|. +..+++|+.|++++
T Consensus 210 -------~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 210 -------LEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp -------TTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCS
T ss_pred -------HHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCC
Confidence 2345556677777777776665 54556667777777777777444 4443 66667777777766
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.2e-21 Score=210.82 Aligned_cols=129 Identities=21% Similarity=0.261 Sum_probs=102.5
Q ss_pred CCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCcc-ccchHHh
Q 048084 566 RGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIE-KLPETLC 644 (967)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~-~lp~~~~ 644 (967)
.+++.|++++|.+.... .+|..|.++++|++|+|+ ++++....+|..++++++|++|+|++|. +. .+|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~-~~~~~l~~l~~L~~L~L~-----~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY-PIPSSLANLPYLNFLYIG-----GINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCE-ECCGGGGGCTTCSEEEEE-----EETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGG
T ss_pred ceEEEEECCCCCccCCc-ccChhHhCCCCCCeeeCC-----CCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHh
Confidence 68999999999843110 467789999999999998 5445555789999999999999999999 66 8898999
Q ss_pred ccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCC-CCCcCC
Q 048084 645 ELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELI-RLRGVT 701 (967)
Q Consensus 645 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~L~ 701 (967)
++++|++|+|++|.....+|..+..+++|++|++++|.....+|..+..++ +|+.|+
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 999999999999994448899999999999999999944336666555544 444443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.7e-21 Score=209.56 Aligned_cols=291 Identities=17% Similarity=0.186 Sum_probs=200.1
Q ss_pred CccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-cccccCCCCcEEEccCCCCcccc-chHHh
Q 048084 567 GLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEKLLHLKYLNLFCQREIEKL-PETLC 644 (967)
Q Consensus 567 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~l~~L~~L~Ls~~~~i~~l-p~~~~ 644 (967)
+++.++++++.. .. +|..+ .++|++|+|+ + +.+..++ ..++++++|++|+|++|. +..+ |..+.
T Consensus 34 ~l~~l~~~~~~l---~~-ip~~~--~~~l~~L~l~-----~--n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLGL---KA-VPKEI--SPDTTLLDLQ-----N--NDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSCC---SS-CCSCC--CTTCCEEECC-----S--SCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGST
T ss_pred cCCEEECCCCCc---cc-cCCCC--CCCCeEEECC-----C--CcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhh
Confidence 688999988873 33 33323 3688999998 6 5566664 578889999999999998 7766 66788
Q ss_pred ccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccC-CCCCCCCCcCCceEecCcCCCccCccccccCCC
Q 048084 645 ELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVG-IEELIRLRGVTKFVVGGGYDRACSLGSLKKLNL 723 (967)
Q Consensus 645 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~ 723 (967)
++++|++|++++|. ++.+|..+. ++|++|++++| .+..+|.. +..+++|+.|++..+.... .
T Consensus 100 ~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~--------~----- 162 (332)
T 2ft3_A 100 PLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN--------S----- 162 (332)
T ss_dssp TCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG--------G-----
T ss_pred CcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc--------C-----
Confidence 89999999999988 778887765 78999999988 55555543 6777777777665443221 0
Q ss_pred CCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCC
Q 048084 724 LRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGG 803 (967)
Q Consensus 724 L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 803 (967)
......+..+ +|+.|++++|.+... +..+ .++|++|++++|.+
T Consensus 163 ----------------~~~~~~~~~l-~L~~L~l~~n~l~~l------------------~~~~--~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 163 ----------------GFEPGAFDGL-KLNYLRISEAKLTGI------------------PKDL--PETLNELHLDHNKI 205 (332)
T ss_dssp ----------------GSCTTSSCSC-CCSCCBCCSSBCSSC------------------CSSS--CSSCSCCBCCSSCC
T ss_pred ----------------CCCcccccCC-ccCEEECcCCCCCcc------------------Cccc--cCCCCEEECCCCcC
Confidence 0011223344 777888887753321 1222 26899999999988
Q ss_pred CCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeeccccCceEeCccccCCCCCCCCccccccccccccc
Q 048084 804 RRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLR 882 (967)
Q Consensus 804 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 882 (967)
.. .++..+..+++|+.|++++|.+....+. +..+++|+.|+|++|. ++.++.. +..+++|+.|+
T Consensus 206 ~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~ 270 (332)
T 2ft3_A 206 QA--IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG------------LPDLKLLQVVY 270 (332)
T ss_dssp CC--CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT------------GGGCTTCCEEE
T ss_pred Cc--cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChh------------hhcCccCCEEE
Confidence 77 6567888899999999999976655543 7889999999999853 4433322 34788899999
Q ss_pred ccccccccccccccccccc-cccCcccceeeeccCccC--cCCCcCCCCCCCcCeEEEcCCc
Q 048084 883 FDNMKELEELDFRTAIKGE-IIIMPRLSSLQILRCLKL--KALPDHLLQKTTLQELWISGCP 941 (967)
Q Consensus 883 l~~~~~L~~l~~~~~~~~~-~~~l~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~c~ 941 (967)
++++ .++.++.....+.. ...+++|+.|++.+|+.. ...|..+..+++|+.|++++|.
T Consensus 271 l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9887 46665432211100 012577899999999654 3455667788999999998875
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=4.4e-21 Score=208.85 Aligned_cols=120 Identities=20% Similarity=0.207 Sum_probs=68.4
Q ss_pred EEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-ccccc
Q 048084 542 LHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIE 620 (967)
Q Consensus 542 ~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~ 620 (967)
+.+.+.++.+..+|.. + .++|+.|++++|. +..+.+..|.++++|++|+|+ + +.+..+ |..++
T Consensus 34 ~~l~~~~~~l~~lp~~----~--~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-----~--n~l~~~~~~~~~ 97 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKD----L--PPDTALLDLQNNK---ITEIKDGDFKNLKNLHTLILI-----N--NKISKISPGAFA 97 (330)
T ss_dssp TEEECTTSCCCSCCCS----C--CTTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECC-----S--SCCCCBCTTTTT
T ss_pred eEEEecCCCccccCcc----C--CCCCeEEECCCCc---CCEeChhhhccCCCCCEEECC-----C--CcCCeeCHHHhc
Confidence 3444444455554421 1 2466666666665 333344456666666666666 4 444444 55566
Q ss_pred cCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCc-cccccccccEEecCCC
Q 048084 621 KLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRT 681 (967)
Q Consensus 621 ~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~ 681 (967)
++++|++|+|++|. ++.+|..+. ++|++|++++|. ++.++. .+.++++|++|++++|
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCC
Confidence 66666666666666 666665433 566666666666 444433 3566666666666666
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=6.9e-21 Score=228.13 Aligned_cols=356 Identities=19% Similarity=0.127 Sum_probs=221.9
Q ss_pred cCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc-ccccCCCCcE
Q 048084 549 DRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT-NIEKLLHLKY 627 (967)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~-~i~~l~~L~~ 627 (967)
.....+|..+ . +++++|+|++|. +..+.+..|.++++|++|+|+ + |.+..+|. .|.+|++|++
T Consensus 41 ~~l~~vP~~l----p--~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls-----~--N~i~~i~~~~f~~L~~L~~ 104 (635)
T 4g8a_A 41 LNFYKIPDNL----P--FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-----R--CEIQTIEDGAYQSLSHLST 104 (635)
T ss_dssp SCCSSCCSSS----C--TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-----T--CCCCEECTTTTTTCTTCCE
T ss_pred CCcCccCCCC----C--cCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECC-----C--CcCCCcChhHhcCCCCCCE
Confidence 3456677432 1 479999999998 556677889999999999999 7 66888864 6899999999
Q ss_pred EEccCCCCccccch-HHhccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCcccc--ccccCCCCCCCCCcCCce
Q 048084 628 LNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTESLR--YLPVGIEELIRLRGVTKF 703 (967)
Q Consensus 628 L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~~~ 703 (967)
|+|++|. ++.+|. .|.++++|++|+|++|. ++.+|. .|+++++|++|++++| .+. .+|..++.+++|+.|++.
T Consensus 105 L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 105 LILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp EECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECC
T ss_pred EEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhccc
Confidence 9999999 999885 58999999999999998 777775 4899999999999999 444 356778899999998887
Q ss_pred EecCcCCCccCccccccCCCC----------------------------------------------CCeEE-----cCc
Q 048084 704 VVGGGYDRACSLGSLKKLNLL----------------------------------------------RECWI-----CGL 732 (967)
Q Consensus 704 ~~~~~~~~~~~l~~l~~L~~L----------------------------------------------~~L~i-----~~l 732 (967)
.+.........+..+.++..+ ..+.+ ...
T Consensus 182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred CccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 665433222222222221110 00000 000
Q ss_pred CCCCC-----------------------------------hh--------------hhHHhhccCCCCCCcEEEEeec--
Q 048084 733 GGVSD-----------------------------------AG--------------EARRAELEKKKNLFKLGLHFCH-- 761 (967)
Q Consensus 733 ~~~~~-----------------------------------~~--------------~~~~~~l~~~~~L~~L~l~~~~-- 761 (967)
..... .. ......+.....|+.|++..|.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 341 (635)
T 4g8a_A 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 341 (635)
T ss_dssp TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES
T ss_pred ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc
Confidence 00000 00 0000012223345555544331
Q ss_pred ----------------------------CCCCCcccccCCCCc--h-------------------hhHHHHhhhCCCCCC
Q 048084 762 ----------------------------SRDGDEEQAGRRENE--E-------------------DEDERLLEALGPPSN 792 (967)
Q Consensus 762 ----------------------------~~~~~~~~~~~~~~~--~-------------------~~~~~~~~~l~~~~~ 792 (967)
+.............. . .........+..+++
T Consensus 342 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~ 421 (635)
T 4g8a_A 342 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQ 421 (635)
T ss_dssp SCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTT
T ss_pred CcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccc
Confidence 111100000000000 0 000011122334556
Q ss_pred CCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeeccccCceEeCccccCCCCCCCCcc
Q 048084 793 LKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSS 871 (967)
Q Consensus 793 L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~ 871 (967)
|+.+++.++..... .++..+..+++++.++++.|......+. +..+++|+.|+++++..+..+.. ..
T Consensus 422 L~~l~l~~~~~~~~-~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-----------~~ 489 (635)
T 4g8a_A 422 LEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-----------DI 489 (635)
T ss_dssp CCEEECTTSEEEST-TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-----------SC
T ss_pred ccchhhhhcccccc-ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc-----------hh
Confidence 66666655544331 1234556777777788777755544444 66778888888887653322111 11
Q ss_pred cccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCC-cCCCCCCCcCeEEEcCCcc
Q 048084 872 VIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALP-DHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 872 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~ 942 (967)
+..+++|+.|+|++| +|+.+ .+..+..+++|+.|+|++| .++.++ ..+..+++|++|++++|..
T Consensus 490 ~~~l~~L~~L~Ls~N-~L~~l-----~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 490 FTELRNLTFLDLSQC-QLEQL-----SPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp CTTCTTCCEEECTTS-CCCEE-----CTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred hhhccccCEEECCCC-ccCCc-----ChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcC
Confidence 347889999999988 45544 3446778999999999999 677765 4578899999999999965
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.3e-20 Score=205.08 Aligned_cols=121 Identities=25% Similarity=0.285 Sum_probs=70.1
Q ss_pred CccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc-ccccCCCCcEEEccCCCCcccc-chHHh
Q 048084 567 GLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT-NIEKLLHLKYLNLFCQREIEKL-PETLC 644 (967)
Q Consensus 567 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~-~i~~l~~L~~L~Ls~~~~i~~l-p~~~~ 644 (967)
+++.++++++... . +|..+ .+.|++|+|+ + +.+..++. .++++++|++|+|++|. +..+ |..+.
T Consensus 32 ~l~~l~~~~~~l~---~-lp~~~--~~~l~~L~L~-----~--n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLGLE---K-VPKDL--PPDTALLDLQ-----N--NKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSCCC---S-CCCSC--CTTCCEEECC-----S--SCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTT
T ss_pred CCeEEEecCCCcc---c-cCccC--CCCCeEEECC-----C--CcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhc
Confidence 5666666666522 2 22212 2466667776 5 44555543 46666777777777666 5555 55666
Q ss_pred ccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccc-cCCCCCCCCCcCCceEe
Q 048084 645 ELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLP-VGIEELIRLRGVTKFVV 705 (967)
Q Consensus 645 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~~~~~ 705 (967)
++++|++|++++|. ++.+|..+. ++|++|++++| .+..++ ..+..+++|+.|++..+
T Consensus 98 ~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 98 PLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp TCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCc-CCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCC
Confidence 67777777777666 666665543 56777777666 333333 23566666666655443
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=7e-21 Score=206.01 Aligned_cols=219 Identities=23% Similarity=0.299 Sum_probs=105.1
Q ss_pred CCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhc
Q 048084 566 RGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCE 645 (967)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~ 645 (967)
++++.|++++|.+ .. +|..+..+++|++|+|+ + +.+..+|..++++++|++|+|++|. +..+|..+.+
T Consensus 81 ~~l~~L~L~~n~l---~~-lp~~l~~l~~L~~L~L~-----~--n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~ 148 (328)
T 4fcg_A 81 PGRVALELRSVPL---PQ-FPDQAFRLSHLQHMTID-----A--AGLMELPDTMQQFAGLETLTLARNP-LRALPASIAS 148 (328)
T ss_dssp TTCCEEEEESSCC---SS-CCSCGGGGTTCSEEEEE-----S--SCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGG
T ss_pred cceeEEEccCCCc---hh-cChhhhhCCCCCEEECC-----C--CCccchhHHHhccCCCCEEECCCCc-cccCcHHHhc
Confidence 4455555555542 22 23334445555555555 4 3444555555555666666666555 5555555555
Q ss_pred cCCCCEEecCCCCCCcccCccccc---------cccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCcc
Q 048084 646 LYNLERLNVSGCRNLRELPQGIGK---------LRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLG 716 (967)
Q Consensus 646 l~~L~~L~L~~~~~l~~lp~~l~~---------l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~ 716 (967)
+++|++|+|++|..++.+|..+.. +++|++|++++| .+..+|..++.+++|+.|++..+....
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~------- 220 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA------- 220 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC-------
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc-------
Confidence 666666666555545555544432 555555555554 333333333333333333222211100
Q ss_pred ccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeE
Q 048084 717 SLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKEL 796 (967)
Q Consensus 717 ~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 796 (967)
.+..+..+++|+.|++++|.... .++..+..+++|++|
T Consensus 221 -------------------------l~~~l~~l~~L~~L~Ls~n~~~~-----------------~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 221 -------------------------LGPAIHHLPKLEELDLRGCTALR-----------------NYPPIFGGRAPLKRL 258 (328)
T ss_dssp -------------------------CCGGGGGCTTCCEEECTTCTTCC-----------------BCCCCTTCCCCCCEE
T ss_pred -------------------------CchhhccCCCCCEEECcCCcchh-----------------hhHHHhcCCCCCCEE
Confidence 00012233344444444442211 112334445555666
Q ss_pred EEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeec
Q 048084 797 RIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQ 848 (967)
Q Consensus 797 ~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~ 848 (967)
+|++|.... ..|.++..+++|+.|+|++|...+.+|. ++.+++|+.+++.
T Consensus 259 ~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 259 ILKDCSNLL--TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp ECTTCTTCC--BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred ECCCCCchh--hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 665555443 2245555666666666666655555554 5555666555554
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=2.3e-20 Score=211.04 Aligned_cols=339 Identities=17% Similarity=0.086 Sum_probs=161.5
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcc-------------eEEEecccCc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICL-------------RALKLEVRGW 605 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~~ 605 (967)
..++.+.+.++.+..+| ..+.++++|+.|++++|. +....|..++.+++| ++|+++
T Consensus 11 ~~L~~L~l~~n~l~~iP----~~i~~L~~L~~L~l~~n~---~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~---- 79 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMP----VEAENVKSKTEYYNAWSE---WERNAPPGNGEQREMAVSRLRDCLDRQAHELELN---- 79 (454)
T ss_dssp ---------------------------CCHHHHHHHHHH---HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECT----
T ss_pred ccchhhhcccCchhhCC----hhHhcccchhhhhccCCc---ccccCCcccccchhcchhhhhhhhccCCCEEEec----
Confidence 46778888888887776 567899999999999887 444467767777764 778887
Q ss_pred ccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCcccc
Q 048084 606 RSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLR 685 (967)
Q Consensus 606 ~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 685 (967)
+ +.+..+|.. .++|++|++++|. ++.+|.. +.+|++|++++|. ++.+|.. .++|++|++++| .+.
T Consensus 80 -~--~~l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n-~l~ 144 (454)
T 1jl5_A 80 -N--LGLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNN-QLE 144 (454)
T ss_dssp -T--SCCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSS-CCS
T ss_pred -C--CccccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCC-CCC
Confidence 5 445555542 3567777777776 6666642 3566666666665 5444421 146666666666 444
Q ss_pred ccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCC
Q 048084 686 YLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDG 765 (967)
Q Consensus 686 ~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 765 (967)
.+| .++.+++|+.|++..+..... +.. ...|+.|.+.+..... . ..+..+++|+.|++++|.+...
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~l-p~~------~~~L~~L~L~~n~l~~-----l-~~~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKL-PDL------PPSLEFIAAGNNQLEE-----L-PELQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCC-CCC------CTTCCEEECCSSCCSS-----C-CCCTTCTTCCEEECCSSCCSSC
T ss_pred CCc-ccCCCCCCCEEECCCCcCccc-CCC------cccccEEECcCCcCCc-----C-ccccCCCCCCEEECCCCcCCcC
Confidence 455 466666666665554433221 000 1234444433321100 0 1244555556665555533221
Q ss_pred Ccccc--cCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCcc
Q 048084 766 DEEQA--GRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLE 843 (967)
Q Consensus 766 ~~~~~--~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 843 (967)
..... ............++ .+..+++|++|++++|.+.. + |.. +++|+.|++++|.+.. +|.. +++|+
T Consensus 211 ~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l-~~~---~~~L~~L~l~~N~l~~-l~~~--~~~L~ 280 (454)
T 1jl5_A 211 PDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--L-PDL---PPSLEALNVRDNYLTD-LPEL--PQSLT 280 (454)
T ss_dssp CCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--C-CSC---CTTCCEEECCSSCCSC-CCCC--CTTCC
T ss_pred CCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--c-ccc---ccccCEEECCCCcccc-cCcc--cCcCC
Confidence 00000 00000000001112 24556666666666666554 4 221 3566666666664333 3332 36677
Q ss_pred ceeeccccCceEeCccccCCCC----CCCCcccccc-cccccccccccccccccccccccccccccCcccceeeeccCcc
Q 048084 844 DLKIQGMQSVKRVGNEFLGVES----DTDGSSVIAF-PKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLK 918 (967)
Q Consensus 844 ~L~L~~c~~l~~~~~~~~~~~~----~~~~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 918 (967)
.|++++|. ++.++........ ......+..+ ++|+.|+++++ .++.++ ..+++|+.|++++| .
T Consensus 281 ~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp---------~~~~~L~~L~L~~N-~ 348 (454)
T 1jl5_A 281 FLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP---------ALPPRLERLIASFN-H 348 (454)
T ss_dssp EEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSS-C
T ss_pred EEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccc---------ccCCcCCEEECCCC-c
Confidence 77777643 3322210000000 0000001112 24455555443 233221 13688999999988 6
Q ss_pred CcCCCcCCCCCCCcCeEEEcCCcc
Q 048084 919 LKALPDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 919 l~~lp~~~~~l~~L~~L~l~~c~~ 942 (967)
++.+|. .+++|++|++++|+.
T Consensus 349 l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 349 LAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CSCCCC---CCTTCCEEECCSSCC
T ss_pred cccccc---hhhhccEEECCCCCC
Confidence 778887 478999999999865
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=7.7e-20 Score=206.76 Aligned_cols=303 Identities=22% Similarity=0.217 Sum_probs=164.8
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++.+.+.++.+..+|. .+++|++|++++|.+..+ +. ..++|++|+++ + +.+..+| .
T Consensus 91 ~~L~~L~l~~n~l~~lp~-------~~~~L~~L~l~~n~l~~l----~~---~~~~L~~L~L~-----~--n~l~~lp-~ 148 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE-------LPQSLKSLLVDNNNLKAL----SD---LPPLLEYLGVS-----N--NQLEKLP-E 148 (454)
T ss_dssp TTCSEEECCSSCCSSCCC-------CCTTCCEEECCSSCCSCC----CS---CCTTCCEEECC-----S--SCCSSCC-C
T ss_pred CCCCEEEccCCcCCcccc-------ccCCCcEEECCCCccCcc----cC---CCCCCCEEECc-----C--CCCCCCc-c
Confidence 567777777777776652 246778888887763321 11 11578888887 5 5566677 4
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLR 698 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 698 (967)
++++++|++|++++|. ++.+|.. ..+|++|++++|. ++.+| .++++++|++|++++| .+..+|... ++|+
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LSLE 218 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TTCC
T ss_pred cCCCCCCCEEECCCCc-CcccCCC---cccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---Cccc
Confidence 7778888888888877 7777753 2478888888876 66676 5777888888888777 455555432 3566
Q ss_pred cCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchh
Q 048084 699 GVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEED 778 (967)
Q Consensus 699 ~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 778 (967)
.|++..+.... +..+..++.|+.|.+.+..-.. . + ...++|+.|++++|.+...
T Consensus 219 ~L~l~~n~l~~-----lp~~~~l~~L~~L~l~~N~l~~-l----~---~~~~~L~~L~l~~N~l~~l------------- 272 (454)
T 1jl5_A 219 SIVAGNNILEE-----LPELQNLPFLTTIYADNNLLKT-L----P---DLPPSLEALNVRDNYLTDL------------- 272 (454)
T ss_dssp EEECCSSCCSS-----CCCCTTCTTCCEEECCSSCCSS-C----C---SCCTTCCEEECCSSCCSCC-------------
T ss_pred EEECcCCcCCc-----ccccCCCCCCCEEECCCCcCCc-c----c---ccccccCEEECCCCccccc-------------
Confidence 66655544332 2234555666666655421110 0 0 1235777777777743221
Q ss_pred hHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCc
Q 048084 779 EDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGN 858 (967)
Q Consensus 779 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~ 858 (967)
+. .+++|++|++++|.+.. + +.. .++|+.|++++|.+.. ++.+ .++|+.|+++++.
T Consensus 273 -----~~---~~~~L~~L~ls~N~l~~--l-~~~---~~~L~~L~l~~N~l~~-i~~~--~~~L~~L~Ls~N~------- 328 (454)
T 1jl5_A 273 -----PE---LPQSLTFLDVSENIFSG--L-SEL---PPNLYYLNASSNEIRS-LCDL--PPSLEELNVSNNK------- 328 (454)
T ss_dssp -----CC---CCTTCCEEECCSSCCSE--E-SCC---CTTCCEEECCSSCCSE-ECCC--CTTCCEEECCSSC-------
T ss_pred -----Cc---ccCcCCEEECcCCccCc--c-cCc---CCcCCEEECcCCcCCc-ccCC--cCcCCEEECCCCc-------
Confidence 11 13567777777666554 3 211 2466666666664332 2211 1366666666632
Q ss_pred cccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCc--CCCcCCCCC-------
Q 048084 859 EFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLK--ALPDHLLQK------- 929 (967)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l------- 929 (967)
+.+... .+++|+.|+++++ .++.++. .+++|+.|++++|+... .+|..+..+
T Consensus 329 -l~~lp~--------~~~~L~~L~L~~N-~l~~lp~---------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 329 -LIELPA--------LPPRLERLIASFN-HLAEVPE---------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp -CSCCCC--------CCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred -cccccc--------cCCcCCEEECCCC-ccccccc---------hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 222111 3466666666665 3443321 35666667776663333 345555444
Q ss_pred ------CCcCeEEEcCCcc
Q 048084 930 ------TTLQELWISGCPI 942 (967)
Q Consensus 930 ------~~L~~L~l~~c~~ 942 (967)
++|+.|++++|+.
T Consensus 390 ~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp -------------------
T ss_pred ccccccCcCCEEECCCCcC
Confidence 5666777766654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=199.63 Aligned_cols=270 Identities=18% Similarity=0.170 Sum_probs=169.3
Q ss_pred EEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-ccccccC
Q 048084 544 LMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIEKL 622 (967)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~~l 622 (967)
....++.+..+|..+ .++|++|++++|. +..+.+..|.++++|++|+|+ + +.+..+ |..++++
T Consensus 36 c~~~~~~l~~iP~~~------~~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~-----~--n~l~~~~~~~~~~l 99 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL------TEAVKSLDLSNNR---ITYISNSDLQRCVNLQALVLT-----S--NGINTIEEDSFSSL 99 (353)
T ss_dssp EECCSTTCSSCCTTC------CTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-----T--SCCCEECTTTTTTC
T ss_pred eeCCCCCcccccccc------cccCcEEECCCCc---CcccCHHHhccCCCCCEEECC-----C--CccCccCHhhcCCC
Confidence 344455666666322 2478888888887 444455567888888888887 5 455555 3557778
Q ss_pred CCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCc--cccccccccEEecCCCccccccccCCCCCCCCCc
Q 048084 623 LHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQ--GIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRG 699 (967)
Q Consensus 623 ~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 699 (967)
++|++|+|++|. ++.+|.. +.++++|++|++++|. ++.+|. .+.++++|++|++++|..+..++.
T Consensus 100 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~---------- 167 (353)
T 2z80_A 100 GSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQR---------- 167 (353)
T ss_dssp TTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT----------
T ss_pred CCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCH----------
Confidence 888888888887 7777765 6778888888888877 667765 567778888888777633332211
Q ss_pred CCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhh
Q 048084 700 VTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDE 779 (967)
Q Consensus 700 L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 779 (967)
..+..+++|++|++++|.+...
T Consensus 168 --------------------------------------------~~~~~l~~L~~L~l~~n~l~~~-------------- 189 (353)
T 2z80_A 168 --------------------------------------------KDFAGLTFLEELEIDASDLQSY-------------- 189 (353)
T ss_dssp --------------------------------------------TTTTTCCEEEEEEEEETTCCEE--------------
T ss_pred --------------------------------------------HHccCCCCCCEEECCCCCcCcc--------------
Confidence 1123345666666766632211
Q ss_pred HHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC----CCCCCCccceeeccccCceE
Q 048084 780 DERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP----LGKLPSLEDLKIQGMQSVKR 855 (967)
Q Consensus 780 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~----l~~l~~L~~L~L~~c~~l~~ 855 (967)
.+..+..+++|++|++++|.... ++...+..+++|+.|++++|.+....+. ....+.++.+++++
T Consensus 190 ---~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~------ 258 (353)
T 2z80_A 190 ---EPKSLKSIQNVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN------ 258 (353)
T ss_dssp ---CTTTTTTCSEEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES------
T ss_pred ---CHHHHhccccCCeecCCCCcccc--chhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc------
Confidence 13445666777788887777655 5333445678888888888754432111 11222333333332
Q ss_pred eCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCC-CCCCCcCe
Q 048084 856 VGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHL-LQKTTLQE 934 (967)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~ 934 (967)
+.+.++ .+.. .+..+..+++|+.|++++| .++.+|..+ ..+++|++
T Consensus 259 -------------------------~~l~~~-~l~~------l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 259 -------------------------VKITDE-SLFQ------VMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp -------------------------CBCCHH-HHHH------HHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred -------------------------ccccCc-chhh------hHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCE
Confidence 112221 1111 1224557899999999999 778898774 78999999
Q ss_pred EEEcCCcch
Q 048084 935 LWISGCPIL 943 (967)
Q Consensus 935 L~l~~c~~l 943 (967)
|++++||..
T Consensus 306 L~L~~N~~~ 314 (353)
T 2z80_A 306 IWLHTNPWD 314 (353)
T ss_dssp EECCSSCBC
T ss_pred EEeeCCCcc
Confidence 999999753
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=3.4e-19 Score=207.40 Aligned_cols=118 Identities=23% Similarity=0.252 Sum_probs=91.6
Q ss_pred cEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccccc
Q 048084 540 KILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNI 619 (967)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i 619 (967)
.++.+.+.++.+..+|.. +. ++|+.|++++|.+. . +|. .+++|++|+|+ + |.+..+|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~----l~--~~L~~L~L~~N~l~---~-lp~---~l~~L~~L~Ls-----~--N~l~~lp~-- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDC----LP--AHITTLVIPDNNLT---S-LPA---LPPELRTLEVS-----G--NQLTSLPV-- 98 (622)
T ss_dssp CCCEEECCSSCCSCCCSC----CC--TTCSEEEECSCCCS---C-CCC---CCTTCCEEEEC-----S--CCCSCCCC--
T ss_pred CCcEEEecCCCcCccChh----hC--CCCcEEEecCCCCC---C-CCC---cCCCCCEEEcC-----C--CcCCcCCC--
Confidence 467788888888877743 22 78999999999743 3 333 57889999998 6 56777876
Q ss_pred ccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCcccccccc
Q 048084 620 EKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPV 689 (967)
Q Consensus 620 ~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~ 689 (967)
.+++|++|+|++|. +..+|. .+++|++|++++|. ++.+|.. +++|++|++++| .+..+|.
T Consensus 99 -~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~ 158 (622)
T 3g06_A 99 -LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA 158 (622)
T ss_dssp -CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC
T ss_pred -CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCC
Confidence 67889999999998 888887 67889999999988 7888864 488999999988 5555553
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=3.3e-22 Score=229.24 Aligned_cols=368 Identities=19% Similarity=0.100 Sum_probs=228.1
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchh-ccchhhhccCCcceEEEecccCccccccccccc-c
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSR-VILPQLFDKLICLRALKLEVRGWRSCENYIKEI-P 616 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p 616 (967)
+.++++.+.++.+...+ +...+..+++|++|++++|.+.... ..++..+..+++|++|+|+ + +.+... +
T Consensus 3 ~~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls-----~--n~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-----S--NELGDVGV 73 (461)
T ss_dssp EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-----T--CCCHHHHH
T ss_pred ccceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC-----C--CcCChHHH
Confidence 57888899888776433 1133678899999999999853211 1256678888999999998 5 334331 2
Q ss_pred ccc-ccCC----CCcEEEccCCCCcc-----ccchHHhccCCCCEEecCCCCCCcc-cCccc-----cccccccEEecCC
Q 048084 617 TNI-EKLL----HLKYLNLFCQREIE-----KLPETLCELYNLERLNVSGCRNLRE-LPQGI-----GKLRKLMYLYNDR 680 (967)
Q Consensus 617 ~~i-~~l~----~L~~L~Ls~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~l~~-lp~~l-----~~l~~L~~L~l~~ 680 (967)
..+ ..+. +|++|+|++|. +. .+|..+..+++|++|+|++|. ++. .+..+ ..+++|++|++++
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCC
Confidence 222 2344 69999999998 66 467778899999999999988 542 22222 2356799999999
Q ss_pred Ccccc----ccccCCCCCCCCCcCCceEecCcCCCccCcc-ccc-cCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCc
Q 048084 681 TESLR----YLPVGIEELIRLRGVTKFVVGGGYDRACSLG-SLK-KLNLLRECWICGLGGVSDAGEARRAELEKKKNLFK 754 (967)
Q Consensus 681 ~~~~~----~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~-~l~-~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~ 754 (967)
|.... .++..+..+++|+.|++..+.........+. .+. .++.|+.|.+.+..............+..+++|++
T Consensus 152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 152 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE
Confidence 84322 2344566678888888776654321111111 111 24567777777654333322334556778899999
Q ss_pred EEEEeecCCCCCcccccCCCCchhhHHHHhh-hCCCCCCCCeEEEeeeCCCCCC---CCCchhhcccccceeEecCccCC
Q 048084 755 LGLHFCHSRDGDEEQAGRRENEEDEDERLLE-ALGPPSNLKELRIDEYGGRRNV---VPINWIMSLTNLRDLSLIMWRNR 830 (967)
Q Consensus 755 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~~---~~~~~l~~l~~L~~L~L~~~~~~ 830 (967)
|++++|.+. +.....+.. ....+++|++|++++|.+.... + +..+..+++|+.|++++|.+.
T Consensus 232 L~Ls~n~l~-------------~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 232 LALGSNKLG-------------DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp EECCSSBCH-------------HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTTCCCH
T ss_pred EeccCCcCC-------------hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCCCCCc
Confidence 999988421 111222223 2345789999999988765411 1 344557899999999998643
Q ss_pred CCCC----C--CCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccc-
Q 048084 831 EHLP----P--LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEII- 903 (967)
Q Consensus 831 ~~l~----~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~- 903 (967)
...+ . ....++|++|++++|. ++..+.... ...+..+++|+.|+++++ .+......... ..+.
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l-------~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~-~~l~~ 367 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHF-------SSVLAQNRFLLELQISNN-RLEDAGVRELC-QGLGQ 367 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH-------HHHHHHCSSCCEEECCSS-BCHHHHHHHHH-HHHTS
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHH-------HHHHhhCCCccEEEccCC-ccccccHHHHH-HHHcC
Confidence 2211 1 1234689999999865 221100000 011235688888888887 34433221000 0111
Q ss_pred cCcccceeeeccCccCc-----CCCcCCCCCCCcCeEEEcCCcc
Q 048084 904 IMPRLSSLQILRCLKLK-----ALPDHLLQKTTLQELWISGCPI 942 (967)
Q Consensus 904 ~l~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~c~~ 942 (967)
.+++|+.|++++| .++ .+|..+..+++|++|++++|+.
T Consensus 368 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 368 PGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 2678999999988 455 5676677788899999998864
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=3.2e-19 Score=191.89 Aligned_cols=224 Identities=21% Similarity=0.158 Sum_probs=133.9
Q ss_pred CCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc---ccccccCCCCcEEEccCCCCccccchH
Q 048084 566 RGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI---PTNIEKLLHLKYLNLFCQREIEKLPET 642 (967)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l---p~~i~~l~~L~~L~Ls~~~~i~~lp~~ 642 (967)
++|+.|++++|. +..+.+..|.++++|++|+|+ + +.+..+ |..+..+++|++|+|++|. +..+|..
T Consensus 28 ~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~-----~--n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~ 96 (306)
T 2z66_A 28 SSATRLELESNK---LQSLPHGVFDKLTQLTKLSLS-----S--NGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN 96 (306)
T ss_dssp TTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECC-----S--SCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEE
T ss_pred CCCCEEECCCCc---cCccCHhHhhccccCCEEECC-----C--CccCcccCcccccccccccCEEECCCCc-cccChhh
Confidence 567777777766 333344456677777777776 4 334333 4555566777777777776 6666666
Q ss_pred HhccCCCCEEecCCCCCCcccCc--cccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCcccccc
Q 048084 643 LCELYNLERLNVSGCRNLRELPQ--GIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKK 720 (967)
Q Consensus 643 ~~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~ 720 (967)
+..+++|++|++++|. ++.+|. .+..+++|++|++++|......+..+..+++|+.|++..+....
T Consensus 97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------- 164 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----------- 164 (306)
T ss_dssp EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-----------
T ss_pred cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-----------
Confidence 6677777777777766 555543 56667777777777763333333344455555544433222110
Q ss_pred CCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEee
Q 048084 721 LNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDE 800 (967)
Q Consensus 721 L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 800 (967)
...+..+..+++|+.|++++|.+... .+..+..+++|++|+|++
T Consensus 165 -------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 165 -------------------NFLPDIFTELRNLTFLDLSQCQLEQL-----------------SPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp -------------------GEECSCCTTCTTCCEEECTTSCCCEE-----------------CTTTTTTCTTCCEEECTT
T ss_pred -------------------ccchhHHhhCcCCCEEECCCCCcCCc-----------------CHHHhcCCCCCCEEECCC
Confidence 00112234455666666666632211 123456677788888887
Q ss_pred eCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCC-Cccceeeccc
Q 048084 801 YGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLP-SLEDLKIQGM 850 (967)
Q Consensus 801 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~-~L~~L~L~~c 850 (967)
|.+.. +++..+..+++|+.|++++|.+....+. +..+| +|+.|+|+++
T Consensus 209 N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 209 NNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp SCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CccCc--cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 77766 5455677788888888888866655544 66664 7888888774
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=8e-19 Score=199.74 Aligned_cols=238 Identities=21% Similarity=0.200 Sum_probs=161.8
Q ss_pred EEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-ccccc
Q 048084 543 HLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEK 621 (967)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~ 621 (967)
.+...+..+..+|..+ .++|+.|++++|. +..+.+..|.++++|++|+|+ + |.+..++ ..+.+
T Consensus 58 ~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls-----~--n~i~~~~~~~~~~ 121 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI------PSNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLG-----R--NSIRQIEVGAFNG 121 (452)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSC---CCEECTTTTTTCTTCCEEECC-----S--SCCCEECTTTTTT
T ss_pred EEEECCCCcCccCCCC------CCCccEEECcCCc---CceECHHHcCCCCCCCEEECC-----C--CccCCcChhhccC
Confidence 4455555566666322 2678888888887 445567778888888888888 6 5566654 66788
Q ss_pred CCCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCccccccccC-CCCCCCCC
Q 048084 622 LLHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTESLRYLPVG-IEELIRLR 698 (967)
Q Consensus 622 l~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~ 698 (967)
+++|++|+|++|. +..+|.. +..+++|++|+|++|. ++.+|. .+.++++|++|++++|..+..++.. +..+++|+
T Consensus 122 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 122 LASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp CTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred cccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 8888888888888 7777754 7778888888888888 666664 5778888888888887677776653 66677777
Q ss_pred cCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchh
Q 048084 699 GVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEED 778 (967)
Q Consensus 699 ~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 778 (967)
.|++..+.... +. .+..+++|+.|++++|.+...
T Consensus 200 ~L~L~~n~l~~-----~~----------------------------~~~~l~~L~~L~Ls~N~l~~~------------- 233 (452)
T 3zyi_A 200 YLNLGMCNIKD-----MP----------------------------NLTPLVGLEELEMSGNHFPEI------------- 233 (452)
T ss_dssp EEECTTSCCSS-----CC----------------------------CCTTCTTCCEEECTTSCCSEE-------------
T ss_pred EEECCCCcccc-----cc----------------------------cccccccccEEECcCCcCccc-------------
Confidence 66655433221 11 123445666777766643221
Q ss_pred hHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeeccc
Q 048084 779 EDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGM 850 (967)
Q Consensus 779 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c 850 (967)
.+..+..+++|++|+|++|.+.. +++..|..+++|+.|+|++|.+....+. +..+++|+.|+|+++
T Consensus 234 ----~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 234 ----RPGSFHGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ----CGGGGTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred ----CcccccCccCCCEEEeCCCcCce--ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 13455667777777777777665 5566677777788888877755433333 566777777777764
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=198.09 Aligned_cols=239 Identities=20% Similarity=0.197 Sum_probs=162.0
Q ss_pred EEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-ccccc
Q 048084 543 HLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEK 621 (967)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~ 621 (967)
.+...+..+..+|..+ .++++.|++++|. +..+.+..|.++++|++|+|+ + |.+..++ ..+.+
T Consensus 47 ~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls-----~--n~i~~i~~~~~~~ 110 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI------STNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQLS-----R--NHIRTIEIGAFNG 110 (440)
T ss_dssp EEECCSCCCSSCCSCC------CTTCSEEECCSCC---CCEECTTTTSSCSSCCEEECC-----S--SCCCEECGGGGTT
T ss_pred EEEeCCCCcCcCCCCC------CCCCcEEEccCCc---CCeeCHHHhhCCCCCCEEECC-----C--CcCCccChhhccC
Confidence 4555555666666432 2678888888887 444556678888888888888 6 5566654 56778
Q ss_pred CCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCcccccccc-CCCCCCCCC
Q 048084 622 LLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTESLRYLPV-GIEELIRLR 698 (967)
Q Consensus 622 l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~ 698 (967)
+++|++|+|++|. ++.+|. .+..+++|++|+|++|. ++.+|. .+.++++|++|++++|..+..++. .+..+++|+
T Consensus 111 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 111 LANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp CSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred CccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 8888888888887 777775 57788888888888887 666654 577888888888888766666665 366677777
Q ss_pred cCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchh
Q 048084 699 GVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEED 778 (967)
Q Consensus 699 ~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 778 (967)
.|++..+.... +. .+..+++|+.|+|++|.+...
T Consensus 189 ~L~L~~n~l~~-----~~----------------------------~~~~l~~L~~L~Ls~N~l~~~------------- 222 (440)
T 3zyj_A 189 YLNLAMCNLRE-----IP----------------------------NLTPLIKLDELDLSGNHLSAI------------- 222 (440)
T ss_dssp EEECTTSCCSS-----CC----------------------------CCTTCSSCCEEECTTSCCCEE-------------
T ss_pred eecCCCCcCcc-----cc----------------------------ccCCCcccCEEECCCCccCcc-------------
Confidence 66654433221 11 133455677777776643221
Q ss_pred hHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeecccc
Q 048084 779 EDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGMQ 851 (967)
Q Consensus 779 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c~ 851 (967)
.+..+..+++|++|+|++|.+.. +++..|..+++|+.|+|++|.+....+. +..+++|+.|+|++++
T Consensus 223 ----~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 223 ----RPGSFQGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ----CTTTTTTCTTCCEEECTTCCCCE--ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ----ChhhhccCccCCEEECCCCceeE--EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 13455667778888888777766 5566777778888888888755543333 6677888888887643
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3.1e-18 Score=184.15 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=60.7
Q ss_pred CcceEEEecccCcccccccccccccc-cccCCCCcEEEccCCCCcccc---chHHhccCCCCEEecCCCCCCcccCcccc
Q 048084 593 ICLRALKLEVRGWRSCENYIKEIPTN-IEKLLHLKYLNLFCQREIEKL---PETLCELYNLERLNVSGCRNLRELPQGIG 668 (967)
Q Consensus 593 ~~L~~L~L~~~~~~~c~~~~~~lp~~-i~~l~~L~~L~Ls~~~~i~~l---p~~~~~l~~L~~L~L~~~~~l~~lp~~l~ 668 (967)
++|++|+|+ + +.+..+|.. +.++++|++|+|++|. +..+ |..+..+++|++|+|++|. +..+|..+.
T Consensus 28 ~~l~~L~L~-----~--n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELE-----S--NKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFL 98 (306)
T ss_dssp TTCCEEECC-----S--SCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEE
T ss_pred CCCCEEECC-----C--CccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcC
Confidence 578888887 6 556677654 5778888888888887 6654 5667778888888888887 777777778
Q ss_pred ccccccEEecCCC
Q 048084 669 KLRKLMYLYNDRT 681 (967)
Q Consensus 669 ~l~~L~~L~l~~~ 681 (967)
.+++|++|++++|
T Consensus 99 ~l~~L~~L~l~~n 111 (306)
T 2z66_A 99 GLEQLEHLDFQHS 111 (306)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCCCCCEEECCCC
Confidence 8888888888777
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=8.1e-18 Score=191.41 Aligned_cols=113 Identities=24% Similarity=0.277 Sum_probs=70.4
Q ss_pred CchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccc
Q 048084 810 INWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKEL 889 (967)
Q Consensus 810 ~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 889 (967)
+..+..+++|+.|+|++|.+ ..+|.+..+++|+.|+|+++. ++.+... .+..+++|+.|+++++ .+
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~L~~n-~l 254 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGNH-FPEIRPG-----------SFHGLSSLKKLWVMNS-QV 254 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTTSC-CSEECGG-----------GGTTCTTCCEEECTTS-CC
T ss_pred hhhccCCCCCCEEECCCCcc-cccccccccccccEEECcCCc-CcccCcc-----------cccCccCCCEEEeCCC-cC
Confidence 44556667777777777633 345666677777777777643 2222111 1235677777777766 33
Q ss_pred cccccccccccccccCcccceeeeccCccCcCCCc-CCCCCCCcCeEEEcCCcc
Q 048084 890 EELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPD-HLLQKTTLQELWISGCPI 942 (967)
Q Consensus 890 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~ 942 (967)
+.+ .+..+..+++|+.|+|++| .++.+|. .+..+++|+.|+|++||.
T Consensus 255 ~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 255 SLI-----ERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEE-----CTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ceE-----CHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 332 2334556788888888888 6666664 456788888888888874
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=8.4e-18 Score=190.56 Aligned_cols=113 Identities=19% Similarity=0.303 Sum_probs=69.1
Q ss_pred CchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccc
Q 048084 810 INWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKEL 889 (967)
Q Consensus 810 ~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 889 (967)
+..|..+++|+.|+|++|. ++.+|.+..+++|+.|+|+++. ++.++.. .+..+++|+.|+++++ .+
T Consensus 178 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~L~~n-~l 243 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNH-LSAIRPG-----------SFQGLMHLQKLWMIQS-QI 243 (440)
T ss_dssp TTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSC-CCEECTT-----------TTTTCTTCCEEECTTC-CC
T ss_pred cchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCc-cCccChh-----------hhccCccCCEEECCCC-ce
Confidence 4455566667777776663 3355666666777777776642 3332211 1235666777777665 33
Q ss_pred cccccccccccccccCcccceeeeccCccCcCCCc-CCCCCCCcCeEEEcCCcc
Q 048084 890 EELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPD-HLLQKTTLQELWISGCPI 942 (967)
Q Consensus 890 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~ 942 (967)
+.+. +..+..+++|+.|+|++| .++.+|. .+..+++|+.|+|++||.
T Consensus 244 ~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 244 QVIE-----RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEEC-----TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred eEEC-----hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 3332 234556788888888887 5666654 456678888888888874
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=9.7e-19 Score=192.14 Aligned_cols=252 Identities=18% Similarity=0.208 Sum_probs=184.0
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
+.++++.+.++.+..++. ..+.++++|++|++++|. +..+.+..|.++++|++|+|+ + |.+..+|..
T Consensus 52 ~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls-----~--n~l~~~~~~ 118 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISN---SDLQRCVNLQALVLTSNG---INTIEEDSFSSLGSLEHLDLS-----Y--NYLSNLSSS 118 (353)
T ss_dssp TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECC-----S--SCCSSCCHH
T ss_pred ccCcEEECCCCcCcccCH---HHhccCCCCCEEECCCCc---cCccCHhhcCCCCCCCEEECC-----C--CcCCcCCHh
Confidence 589999999999887763 468899999999999998 445567789999999999999 7 678888766
Q ss_pred -cccCCCCcEEEccCCCCccccch--HHhccCCCCEEecCCCCCCccc-CccccccccccEEecCCCccccccccCCCCC
Q 048084 619 -IEKLLHLKYLNLFCQREIEKLPE--TLCELYNLERLNVSGCRNLREL-PQGIGKLRKLMYLYNDRTESLRYLPVGIEEL 694 (967)
Q Consensus 619 -i~~l~~L~~L~Ls~~~~i~~lp~--~~~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l 694 (967)
++++++|++|+|++|. +..+|. .+.++++|++|++++|..++.+ |..+.++++|++|++++|......|..+..+
T Consensus 119 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 8899999999999999 899987 6889999999999999656666 4678999999999999995444456677777
Q ss_pred CCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCC
Q 048084 695 IRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRE 774 (967)
Q Consensus 695 ~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 774 (967)
++|+.|++..+.... .....+..+++|+.|++++|.+......
T Consensus 198 ~~L~~L~l~~n~l~~-------------------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~------ 240 (353)
T 2z80_A 198 QNVSHLILHMKQHIL-------------------------------LLEIFVDVTSSVECLELRDTDLDTFHFS------ 240 (353)
T ss_dssp SEEEEEEEECSCSTT-------------------------------HHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred ccCCeecCCCCcccc-------------------------------chhhhhhhcccccEEECCCCcccccccc------
Confidence 777776654432211 1122233467788888888754432210
Q ss_pred CchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCC---CCCchhhcccccceeEecCccCCCCCCC--CCCCCCccceeecc
Q 048084 775 NEEDEDERLLEALGPPSNLKELRIDEYGGRRNV---VPINWIMSLTNLRDLSLIMWRNREHLPP--LGKLPSLEDLKIQG 849 (967)
Q Consensus 775 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~---~~~~~l~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~ 849 (967)
........+.++.++++++.+.... + |.++..+++|+.|++++|.+. .+|. +..+++|++|+|++
T Consensus 241 --------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l-~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 241 --------ELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp --------------CCCCCCEEEEESCBCCHHHHHHH-HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred --------ccccccccchhhccccccccccCcchhhh-HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeC
Confidence 0111234566777777776554311 2 456677888888888888555 4554 57788888888887
Q ss_pred cc
Q 048084 850 MQ 851 (967)
Q Consensus 850 c~ 851 (967)
++
T Consensus 311 N~ 312 (353)
T 2z80_A 311 NP 312 (353)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=5.8e-19 Score=190.41 Aligned_cols=219 Identities=16% Similarity=0.058 Sum_probs=141.1
Q ss_pred cccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccc
Q 048084 561 NVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLP 640 (967)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp 640 (967)
.+..+++|+.|++++|. +..+.|..|..+++|++|+|+ + |.+..++. +..+++|++|+|++|. ++.+|
T Consensus 29 ~~~~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls-----~--n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~ 96 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-----S--NVLYETLD-LESLSTLRTLDLNNNY-VQELL 96 (317)
T ss_dssp HHTTGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECT-----T--SCCEEEEE-ETTCTTCCEEECCSSE-EEEEE
T ss_pred HhccCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECC-----C--CcCCcchh-hhhcCCCCEEECcCCc-ccccc
Confidence 44567788888888887 444566778888888888888 5 45555544 7788888888888887 77766
Q ss_pred hHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCcccccc-ccCCCCCCCCCcCCceEecCcCCCccCccccc
Q 048084 641 ETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYL-PVGIEELIRLRGVTKFVVGGGYDRACSLGSLK 719 (967)
Q Consensus 641 ~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~ 719 (967)
. +++|++|++++|. ++.++. ..+++|++|++++| .+..+ +..+..+++|+.|++..+....
T Consensus 97 ~----~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------- 158 (317)
T 3o53_A 97 V----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT---------- 158 (317)
T ss_dssp E----CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCE----------
T ss_pred C----CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCc----------
Confidence 3 4788888888887 665543 23677888888888 44443 3345556666555544332211
Q ss_pred cCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEe
Q 048084 720 KLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRID 799 (967)
Q Consensus 720 ~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 799 (967)
.........+++|+.|++++|.+... .....+++|++|+|+
T Consensus 159 --------------------~~~~~~~~~l~~L~~L~L~~N~l~~~-------------------~~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 159 --------------------VNFAELAASSDTLEHLNLQYNFIYDV-------------------KGQVVFAKLKTLDLS 199 (317)
T ss_dssp --------------------EEGGGGGGGTTTCCEEECTTSCCCEE-------------------ECCCCCTTCCEEECC
T ss_pred --------------------ccHHHHhhccCcCCEEECCCCcCccc-------------------ccccccccCCEEECC
Confidence 00011112456777777777742211 222346778888888
Q ss_pred eeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeecccc
Q 048084 800 EYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQ 851 (967)
Q Consensus 800 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~ 851 (967)
+|.+.. + +..+..+++|+.|+|++|.+....+.+..+++|+.|++++++
T Consensus 200 ~N~l~~--l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 200 SNKLAF--M-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp SSCCCE--E-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCcCCc--c-hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 877766 6 444677788888888887554332336677777777777744
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1e-19 Score=215.62 Aligned_cols=335 Identities=15% Similarity=0.082 Sum_probs=182.8
Q ss_pred cCCCCccEEEeccCCccchh-ccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccch
Q 048084 563 KGLRGLRSLLVESNEYSWSR-VILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPE 641 (967)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~ 641 (967)
..+++|++|++++|...... ..++..+..+++|++|+|+.+.+++ .....++..+.++++|++|+|++|. +..+|.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~ 237 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK--ISPKDLETIARNCRSLVSVKVGDFE-ILELVG 237 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSS--CCHHHHHHHHHHCTTCCEEECSSCB-GGGGHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCc--cCHHHHHHHHhhCCCCcEEeccCcc-HHHHHH
Confidence 36677777777777531110 0134445667777777776322211 0112344445567777777777776 666777
Q ss_pred HHhccCCCCEEecCCCCCC---cccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCc-cc
Q 048084 642 TLCELYNLERLNVSGCRNL---RELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSL-GS 717 (967)
Q Consensus 642 ~~~~l~~L~~L~L~~~~~l---~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l-~~ 717 (967)
.+.++++|++|+++.+... ...+..+..+++|+.|+++++ ....+|..+..+++|+.|++..+.... ..+ .-
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~---~~~~~~ 313 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLET---EDHCTL 313 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCH---HHHHHH
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCH---HHHHHH
Confidence 7777777777777643212 223344566677777777665 344555556666777777665544221 112 22
Q ss_pred cccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEe----------ecCCCCCcccccCCCCchhhHHHHhhhC
Q 048084 718 LKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHF----------CHSRDGDEEQAGRRENEEDEDERLLEAL 787 (967)
Q Consensus 718 l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l 787 (967)
+..+++|+.|.+.+ ..........+..+++|++|+++. |... .........
T Consensus 314 ~~~~~~L~~L~L~~----~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~---------------~~~~~~~l~ 374 (592)
T 3ogk_B 314 IQKCPNLEVLETRN----VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV---------------SQRGLIALA 374 (592)
T ss_dssp HTTCTTCCEEEEEG----GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC---------------CHHHHHHHH
T ss_pred HHhCcCCCEEeccC----ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc---------------CHHHHHHHH
Confidence 35566666666652 112223333345567777777773 2110 111122222
Q ss_pred CCCCCCCeEEEeeeCCCCCCCCCchhh-cccccceeEecCc---cCCCCCCC-------CCCCCCccceeeccccC-ceE
Q 048084 788 GPPSNLKELRIDEYGGRRNVVPINWIM-SLTNLRDLSLIMW---RNREHLPP-------LGKLPSLEDLKIQGMQS-VKR 855 (967)
Q Consensus 788 ~~~~~L~~L~L~~~~~~~~~~~~~~l~-~l~~L~~L~L~~~---~~~~~l~~-------l~~l~~L~~L~L~~c~~-l~~ 855 (967)
..+++|++|++..+.+.. ..+..+. .+++|+.|+++++ ...+..|. +..+++|+.|+|+.|.. +..
T Consensus 375 ~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITN--ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHCTTCSEEEEEESCCCH--HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred hhCccCeEEEeecCCccH--HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 346778888885555433 1133333 3777888888632 23333221 34477888888876553 111
Q ss_pred eCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcC--CCcCCCCCCCcC
Q 048084 856 VGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKA--LPDHLLQKTTLQ 933 (967)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~ 933 (967)
. .+... ...+++|+.|++++|. ++...+ +..+..+++|+.|+|++|+ ++. ++..+..+++|+
T Consensus 453 ~--~~~~~--------~~~~~~L~~L~L~~n~-l~~~~~----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 453 L--GLSYI--------GQYSPNVRWMLLGYVG-ESDEGL----MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLR 516 (592)
T ss_dssp H--HHHHH--------HHSCTTCCEEEECSCC-SSHHHH----HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCC
T ss_pred H--HHHHH--------HHhCccceEeeccCCC-CCHHHH----HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccC
Confidence 0 00000 0146778888877763 332111 1123467889999999986 442 343445678899
Q ss_pred eEEEcCCc
Q 048084 934 ELWISGCP 941 (967)
Q Consensus 934 ~L~l~~c~ 941 (967)
.|+|++|+
T Consensus 517 ~L~ls~n~ 524 (592)
T 3ogk_B 517 YLWVQGYR 524 (592)
T ss_dssp EEEEESCB
T ss_pred eeECcCCc
Confidence 99999987
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=3e-18 Score=182.07 Aligned_cols=144 Identities=23% Similarity=0.285 Sum_probs=100.7
Q ss_pred EEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-ccccc
Q 048084 542 LHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIE 620 (967)
Q Consensus 542 ~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~ 620 (967)
+.+......+..+|. .-.++|++|++++|. +..+.+..|..+++|++|+|+ + +.+..+ |..+.
T Consensus 14 ~~~~c~~~~l~~ip~------~~~~~l~~L~l~~n~---i~~~~~~~~~~~~~L~~L~l~-----~--n~l~~~~~~~~~ 77 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV------GIPAASQRIFLHGNR---ISHVPAASFRACRNLTILWLH-----S--NVLARIDAAAFT 77 (285)
T ss_dssp CEEECCSSCCSSCCT------TCCTTCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-----S--SCCCEECTTTTT
T ss_pred eEEEcCcCCcccCCc------CCCCCceEEEeeCCc---CCccCHHHcccCCCCCEEECC-----C--CccceeCHhhcC
Confidence 345555556666663 224688888888887 444556678888888999888 5 556655 56788
Q ss_pred cCCCCcEEEccCCCCcccc-chHHhccCCCCEEecCCCCCCccc-CccccccccccEEecCCCccccccccC-CCCCCCC
Q 048084 621 KLLHLKYLNLFCQREIEKL-PETLCELYNLERLNVSGCRNLREL-PQGIGKLRKLMYLYNDRTESLRYLPVG-IEELIRL 697 (967)
Q Consensus 621 ~l~~L~~L~Ls~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L 697 (967)
++++|++|+|++|..+..+ |..+..+++|++|++++|. ++.+ |..+.++++|++|++++| .+..++.. +..+++|
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 155 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNL 155 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCc
Confidence 8888888888888646666 5668888888888888888 5444 566788888888888888 44444432 4555555
Q ss_pred CcCCce
Q 048084 698 RGVTKF 703 (967)
Q Consensus 698 ~~L~~~ 703 (967)
+.|++.
T Consensus 156 ~~L~l~ 161 (285)
T 1ozn_A 156 THLFLH 161 (285)
T ss_dssp CEEECC
T ss_pred cEEECC
Confidence 554443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=3.2e-18 Score=184.61 Aligned_cols=263 Identities=14% Similarity=0.096 Sum_probs=171.8
Q ss_pred ccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-cccccCCCCcEEEccCCCCccccchHHhcc
Q 048084 568 LRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEKLLHLKYLNLFCQREIEKLPETLCEL 646 (967)
Q Consensus 568 Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l 646 (967)
++.++++.+. +...+...+..+++|++|+|+ + +.+..++ ..++++++|++|+|++|. +..++. +..+
T Consensus 12 l~i~~ls~~~---l~~~~~~~~~~~~~L~~L~L~-----~--n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l 79 (317)
T 3o53_A 12 YKIEKVTDSS---LKQALASLRQSAWNVKELDLS-----G--NPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESL 79 (317)
T ss_dssp EEEESCCTTT---HHHHHHHHHTTGGGCSEEECT-----T--SCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTC
T ss_pred eeEeeccccc---hhhhHHHHhccCCCCCEEECc-----C--CccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhc
Confidence 3444455554 334455666777788888887 5 5565554 567788888888888887 766665 7788
Q ss_pred CCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCC
Q 048084 647 YNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRE 726 (967)
Q Consensus 647 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~ 726 (967)
++|++|++++|. ++.+| .+++|++|++++| .+..++..
T Consensus 80 ~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n-~l~~~~~~------------------------------------ 117 (317)
T 3o53_A 80 STLRTLDLNNNY-VQELL----VGPSIETLHAANN-NISRVSCS------------------------------------ 117 (317)
T ss_dssp TTCCEEECCSSE-EEEEE----ECTTCCEEECCSS-CCSEEEEC------------------------------------
T ss_pred CCCCEEECcCCc-ccccc----CCCCcCEEECCCC-ccCCcCcc------------------------------------
Confidence 888888888887 66554 3477888888777 22222110
Q ss_pred eEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCC
Q 048084 727 CWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRN 806 (967)
Q Consensus 727 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 806 (967)
.+++|+.|++++|.+... .+..+..+++|++|++++|.+..
T Consensus 118 ---------------------~~~~L~~L~l~~N~l~~~-----------------~~~~~~~l~~L~~L~Ls~N~l~~- 158 (317)
T 3o53_A 118 ---------------------RGQGKKNIYLANNKITML-----------------RDLDEGCRSRVQYLDLKLNEIDT- 158 (317)
T ss_dssp ---------------------CCSSCEEEECCSSCCCSG-----------------GGBCTGGGSSEEEEECTTSCCCE-
T ss_pred ---------------------ccCCCCEEECCCCCCCCc-----------------cchhhhccCCCCEEECCCCCCCc-
Confidence 123456666666632221 11234456788888888887766
Q ss_pred CCCCchh-hcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccc
Q 048084 807 VVPINWI-MSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDN 885 (967)
Q Consensus 807 ~~~~~~l-~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 885 (967)
.++..+ ..+++|+.|++++|.+. .++....+++|+.|+|++|. ++.++.. +..+++|+.|++++
T Consensus 159 -~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------------~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 159 -VNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK-LAFMGPE------------FQSAAGVTWISLRN 223 (317)
T ss_dssp -EEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSC-CCEECGG------------GGGGTTCSEEECTT
T ss_pred -ccHHHHhhccCcCCEEECCCCcCc-ccccccccccCCEEECCCCc-CCcchhh------------hcccCcccEEECcC
Confidence 434444 47889999999988543 44555568889999998853 4444332 23678888888888
Q ss_pred cccccccccccccccccccCcccceeeeccCccC-cCCCcCCCCCCCcCeEEEcCCcchhh
Q 048084 886 MKELEELDFRTAIKGEIIIMPRLSSLQILRCLKL-KALPDHLLQKTTLQELWISGCPILKE 945 (967)
Q Consensus 886 ~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~ 945 (967)
+ .++.++ ..+..+++|+.|++++|+.. ..+|..+..+++|+.|++++|+.+..
T Consensus 224 N-~l~~l~------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 224 N-KLVLIE------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp S-CCCEEC------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred C-cccchh------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 7 455433 24567788888888888544 35666666778888888887766554
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=8.9e-21 Score=217.31 Aligned_cols=366 Identities=15% Similarity=0.092 Sum_probs=228.2
Q ss_pred ccEEEEEEEecCCCCCC-CcccccccCCCCccEEEeccCCccchhccchhhhccCC----cceEEEecccCccccccccc
Q 048084 539 KKILHLMLALDRGALIP-MPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLI----CLRALKLEVRGWRSCENYIK 613 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~----~L~~L~L~~~~~~~c~~~~~ 613 (967)
+.++.+.+.++.+.... ..++..+..+++|++|++++|.+... .....+..++ +|++|+|+++.++. ....
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~--~~~~l~~~l~~~~~~L~~L~L~~n~i~~--~~~~ 103 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV--GVHCVLQGLQTPSCKIQKLSLQNCCLTG--AGCG 103 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH--HHHHHHHTTCSTTCCCCEEECTTSCCBG--GGHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH--HHHHHHHHHhhCCCceeEEEccCCCCCH--HHHH
Confidence 47888999988876321 11225678889999999999984311 1233345566 79999999332221 1123
Q ss_pred ccccccccCCCCcEEEccCCCCcccc-chHHh-----ccCCCCEEecCCCCCCcc-----cCccccccccccEEecCCCc
Q 048084 614 EIPTNIEKLLHLKYLNLFCQREIEKL-PETLC-----ELYNLERLNVSGCRNLRE-----LPQGIGKLRKLMYLYNDRTE 682 (967)
Q Consensus 614 ~lp~~i~~l~~L~~L~Ls~~~~i~~l-p~~~~-----~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~l~~~~ 682 (967)
.+|..+..+++|++|+|++|. +... +..+. ..++|++|++++|. ++. ++..+..+++|++|++++|.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 568888999999999999998 6643 22232 35689999999998 543 45667788999999999995
Q ss_pred cccccccCCC-----CCCCCCcCCceEecCcCCCcc-CccccccCCCCCCeEEcCcCCCCChh-hhH-HhhccCCCCCCc
Q 048084 683 SLRYLPVGIE-----ELIRLRGVTKFVVGGGYDRAC-SLGSLKKLNLLRECWICGLGGVSDAG-EAR-RAELEKKKNLFK 754 (967)
Q Consensus 683 ~~~~~p~~~~-----~l~~L~~L~~~~~~~~~~~~~-~l~~l~~L~~L~~L~i~~l~~~~~~~-~~~-~~~l~~~~~L~~ 754 (967)
.....+..+. .+++|+.|++..+........ ....+..++.|+.|.+.+..- .... ... ...+..+++|++
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL-GDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC-ChHHHHHHHHHHhcCCCCceE
Confidence 3222122221 355788887776654431111 122345677788777766421 1110 111 223346889999
Q ss_pred EEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhh-----cccccceeEecCccC
Q 048084 755 LGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIM-----SLTNLRDLSLIMWRN 829 (967)
Q Consensus 755 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~-----~l~~L~~L~L~~~~~ 829 (967)
|++++|.+. ......++..+..+++|++|++++|.+.. ..+..+. ..++|+.|++++|.+
T Consensus 261 L~L~~n~l~-------------~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 261 LWIWECGIT-------------AKGCGDLCRVLRAKESLKELSLAGNELGD--EGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp EECTTSCCC-------------HHHHHHHHHHHHHCTTCCEEECTTCCCHH--HHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred EECcCCCCC-------------HHHHHHHHHHHhhCCCcceEECCCCCCch--HHHHHHHHHhccCCccceeeEcCCCCC
Confidence 999998432 12233355666678999999999987654 2122333 236999999999975
Q ss_pred CCC----CCC-CCCCCCccceeeccccCceEeCcc-ccCCCCCCCCcccc-ccccccccccccccccccccccccccccc
Q 048084 830 REH----LPP-LGKLPSLEDLKIQGMQSVKRVGNE-FLGVESDTDGSSVI-AFPKLKLLRFDNMKELEELDFRTAIKGEI 902 (967)
Q Consensus 830 ~~~----l~~-l~~l~~L~~L~L~~c~~l~~~~~~-~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~L~~l~~~~~~~~~~ 902 (967)
... ++. +..+++|++|+|++|. +...+.. +.. .+. ..++|+.|++++| .++.-.. ...+..+
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~--------~l~~~~~~L~~L~L~~n-~i~~~~~-~~l~~~l 394 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQ--------GLGQPGSVLRVLWLADC-DVSDSSC-SSLAATL 394 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHH--------HHTSTTCCCCEEECTTS-CCCHHHH-HHHHHHH
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHH--------HHcCCCCceEEEECCCC-CCChhhH-HHHHHHH
Confidence 543 222 5567999999999863 3322110 000 000 2679999999998 3442111 0123345
Q ss_pred ccCcccceeeeccCccCcC---------CCcCCCCCCCcCeEEEcCCc
Q 048084 903 IIMPRLSSLQILRCLKLKA---------LPDHLLQKTTLQELWISGCP 941 (967)
Q Consensus 903 ~~l~~L~~L~l~~c~~l~~---------lp~~~~~l~~L~~L~l~~c~ 941 (967)
..+++|+.|++++|+ ++. +|.. ..+|+.|.+.++.
T Consensus 395 ~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~---~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 395 LANHSLRELDLSNNC-LGDAGILQLVESVRQP---GCLLEQLVLYDIY 438 (461)
T ss_dssp HHCCCCCEEECCSSS-CCHHHHHHHHHHHTST---TCCCCEEECTTCC
T ss_pred HhCCCccEEECCCCC-CCHHHHHHHHHHhccC---Ccchhheeecccc
Confidence 578999999999994 442 3332 3456677666553
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=2.8e-19 Score=211.97 Aligned_cols=352 Identities=15% Similarity=0.064 Sum_probs=218.9
Q ss_pred ccEEEEEEEecCCCCCCCcccccccC-CCC-ccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccc--
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKG-LRG-LRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKE-- 614 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~-- 614 (967)
+.++++.+.++.+.... ...+.. +++ |++|++++|...... .++....++++|++|+|+ +| .+..
T Consensus 112 ~~L~~L~L~~~~i~~~~---~~~l~~~~~~~L~~L~L~~~~~~~~~-~l~~~~~~~~~L~~L~L~-----~~--~~~~~~ 180 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLD---LDRLAKARADDLETLKLDKCSGFTTD-GLLSIVTHCRKIKTLLME-----ES--SFSEKD 180 (592)
T ss_dssp TTCCEEEEESCBCCHHH---HHHHHHHHGGGCCEEEEESCEEEEHH-HHHHHHHHCTTCSEEECT-----TC--EEECCC
T ss_pred CCCCeEEeeccEecHHH---HHHHHHhccccCcEEECcCCCCcCHH-HHHHHHhhCCCCCEEECc-----cc--cccCcc
Confidence 46788888877554211 122333 344 999999888632111 244556688999999998 53 2221
Q ss_pred ---cccccccCCCCcEEEccCCCCcc-----ccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccc--
Q 048084 615 ---IPTNIEKLLHLKYLNLFCQREIE-----KLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESL-- 684 (967)
Q Consensus 615 ---lp~~i~~l~~L~~L~Ls~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~-- 684 (967)
++..+.++++|++|++++|. +. .++..+.++++|++|++++|. +..+|..+..+++|++|+++.+...
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTT
T ss_pred hhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccc
Confidence 33445678899999999888 54 455667788999999999987 7778888889999999999754222
Q ss_pred -cccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCC
Q 048084 685 -RYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSR 763 (967)
Q Consensus 685 -~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 763 (967)
...+..+..+++|+.|.+..+... .....+..+++|+.|.+.+.. .........+..+++|+.|+++.+.
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~~~----~l~~~~~~~~~L~~L~Ls~~~---l~~~~~~~~~~~~~~L~~L~L~~~~-- 329 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMGPN----EMPILFPFAAQIRKLDLLYAL---LETEDHCTLIQKCPNLEVLETRNVI-- 329 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCCTT----TGGGGGGGGGGCCEEEETTCC---CCHHHHHHHHTTCTTCCEEEEEGGG--
T ss_pred hHHHHHHhhccccccccCccccchh----HHHHHHhhcCCCcEEecCCCc---CCHHHHHHHHHhCcCCCEEeccCcc--
Confidence 123344566666666644432211 111223456677777877654 2222333456788999999998441
Q ss_pred CCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEee----------eCCCCCCCCCchhhcccccceeEecCccCCCCC
Q 048084 764 DGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDE----------YGGRRNVVPINWIMSLTNLRDLSLIMWRNREHL 833 (967)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~----------~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l 833 (967)
....+......+++|++|+|++ ++.......+.....+++|+.|+++.|.+....
T Consensus 330 ---------------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 330 ---------------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp ---------------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred ---------------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 1222333335578899999994 333221110223446899999999666443322
Q ss_pred -CCCCC-CCCccceeecc---ccCceEeCcc--ccCCCCCCCCccccccccccccccccccc-cccccccccccccc-cc
Q 048084 834 -PPLGK-LPSLEDLKIQG---MQSVKRVGNE--FLGVESDTDGSSVIAFPKLKLLRFDNMKE-LEELDFRTAIKGEI-II 904 (967)
Q Consensus 834 -~~l~~-l~~L~~L~L~~---c~~l~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-L~~l~~~~~~~~~~-~~ 904 (967)
..++. +++|+.|++++ |+.++..+.. +. ..+.++++|+.|++++|.+ +..-.+ ..+ ..
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~--------~~~~~~~~L~~L~L~~~~~~l~~~~~-----~~~~~~ 461 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR--------SLLIGCKKLRRFAFYLRQGGLTDLGL-----SYIGQY 461 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH--------HHHHHCTTCCEEEEECCGGGCCHHHH-----HHHHHS
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH--------HHHHhCCCCCEEEEecCCCCccHHHH-----HHHHHh
Confidence 22433 88999999985 3344332110 00 0123688999999977653 221111 112 24
Q ss_pred CcccceeeeccCccCcC--CCcCCCCCCCcCeEEEcCCc
Q 048084 905 MPRLSSLQILRCLKLKA--LPDHLLQKTTLQELWISGCP 941 (967)
Q Consensus 905 l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~ 941 (967)
+++|+.|++++|. ++. ++..+..+++|++|+|++|+
T Consensus 462 ~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 462 SPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 8999999999994 542 44455678999999999998
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=9.2e-18 Score=191.72 Aligned_cols=130 Identities=14% Similarity=0.084 Sum_probs=70.8
Q ss_pred hCCCCCCCCeEEEeeeCCCCCCCCCchhh-cccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCccccCCC
Q 048084 786 ALGPPSNLKELRIDEYGGRRNVVPINWIM-SLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVE 864 (967)
Q Consensus 786 ~l~~~~~L~~L~L~~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~ 864 (967)
.+..+++|+.|+|++|.+.. .+|..+. .+++|+.|+|++|.+. .++....+++|+.|+|++|. ++.++..
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----- 209 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK-LAFMGPE----- 209 (487)
T ss_dssp CGGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSC-CCEECGG-----
T ss_pred hhcCCCCCCEEECCCCCCCC--cChHHHhhhCCcccEEecCCCccc-cccccccCCCCCEEECCCCC-CCCCCHh-----
Confidence 34456677777777776655 3344443 5677777777777433 33445556777777777643 3333221
Q ss_pred CCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccC-cCCCcCCCCCCCcCeEEEc
Q 048084 865 SDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKL-KALPDHLLQKTTLQELWIS 938 (967)
Q Consensus 865 ~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~ 938 (967)
+..+++|+.|+++++ .++.++ ..+..+++|+.|++++|+.. ..+|..+..++.|+.++++
T Consensus 210 -------~~~l~~L~~L~Ls~N-~l~~lp------~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 210 -------FQSAAGVTWISLRNN-KLVLIE------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -------GGGGTTCSEEECTTS-CCCEEC------TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -------HcCCCCccEEEecCC-cCcccc------hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 224566666666665 333322 23445566666666666433 2344444455555555554
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=1.2e-16 Score=186.02 Aligned_cols=258 Identities=22% Similarity=0.219 Sum_probs=191.1
Q ss_pred CCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhc
Q 048084 566 RGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCE 645 (967)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~ 645 (967)
.++++|++++|.+. . +|..+. ++|++|+|+ + |.+..+|. .+++|++|+|++|. ++.+|. .
T Consensus 40 ~~l~~L~ls~n~L~---~-lp~~l~--~~L~~L~L~-----~--N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~ 99 (622)
T 3g06_A 40 NGNAVLNVGESGLT---T-LPDCLP--AHITTLVIP-----D--NNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---L 99 (622)
T ss_dssp HCCCEEECCSSCCS---C-CCSCCC--TTCSEEEEC-----S--CCCSCCCC---CCTTCCEEEECSCC-CSCCCC---C
T ss_pred CCCcEEEecCCCcC---c-cChhhC--CCCcEEEec-----C--CCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---C
Confidence 45888999988743 3 343333 789999998 6 56777876 57889999999998 888887 7
Q ss_pred cCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCC
Q 048084 646 LYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLR 725 (967)
Q Consensus 646 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~ 725 (967)
+++|++|+|++|. ++.+|. .+++|+.|++++| .+..+|..+ ++|+.|++..+.... ++
T Consensus 100 l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~~l---~~L~~L~Ls~N~l~~-----------l~--- 157 (622)
T 3g06_A 100 PPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVLP---PGLQELSVSDNQLAS-----------LP--- 157 (622)
T ss_dssp CTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCSC-----------CC---
T ss_pred CCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCCCC---CCCCEEECcCCcCCC-----------cC---
Confidence 7889999999987 777876 5788899999888 566666543 555555544332111 00
Q ss_pred CeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCC
Q 048084 726 ECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRR 805 (967)
Q Consensus 726 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 805 (967)
..+.+|+.|++++|.+.. ++ ..+++|+.|++++|.+..
T Consensus 158 ---------------------~~~~~L~~L~L~~N~l~~------------------l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 158 ---------------------ALPSELCKLWAYNNQLTS------------------LP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp ---------------------CCCTTCCEEECCSSCCSC------------------CC---CCCTTCCEEECCSSCCSC
T ss_pred ---------------------CccCCCCEEECCCCCCCC------------------Cc---ccCCCCcEEECCCCCCCC
Confidence 123578888888884322 11 346899999999999877
Q ss_pred CCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccccccccc
Q 048084 806 NVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDN 885 (967)
Q Consensus 806 ~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 885 (967)
+ |. .+++|+.|++++|.+. .+|. .+++|+.|+|++|. ++.++ . .+++|+.|++++
T Consensus 196 --l-~~---~~~~L~~L~L~~N~l~-~l~~--~~~~L~~L~Ls~N~-L~~lp-------~--------~l~~L~~L~Ls~ 250 (622)
T 3g06_A 196 --L-PT---LPSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNR-LTSLP-------V--------LPSELKELMVSG 250 (622)
T ss_dssp --C-CC---CCTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSSC-CSCCC-------C--------CCTTCCEEECCS
T ss_pred --C-CC---ccchhhEEECcCCccc-ccCC--CCCCCCEEEccCCc-cCcCC-------C--------CCCcCcEEECCC
Confidence 6 43 3589999999999544 5554 35899999999853 33322 1 678999999999
Q ss_pred cccccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCCcch
Q 048084 886 MKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGCPIL 943 (967)
Q Consensus 886 ~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 943 (967)
| .++.++. .+++|+.|++++| .++.+|..+..+++|+.|+|++|+.-
T Consensus 251 N-~L~~lp~---------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 251 N-RLTSLPM---------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp S-CCSCCCC---------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred C-CCCcCCc---------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 8 5765542 5789999999999 78899999999999999999999864
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.3e-17 Score=190.44 Aligned_cols=218 Identities=17% Similarity=0.071 Sum_probs=155.1
Q ss_pred ccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccch
Q 048084 562 VKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPE 641 (967)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~ 641 (967)
...+++|++|++++|. +..+.|..|..+++|++|+|+ + |.+..++. ++.+++|++|+|++|. +..+|.
T Consensus 30 ~~~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-----~--N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~ 97 (487)
T 3oja_A 30 RQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-----S--NVLYETLD-LESLSTLRTLDLNNNY-VQELLV 97 (487)
T ss_dssp STTGGGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECT-----T--SCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE
T ss_pred cccCCCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEee-----C--CCCCCCcc-cccCCCCCEEEecCCc-CCCCCC
Confidence 3455689999999988 445567778999999999998 6 55655544 8889999999999998 887774
Q ss_pred HHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccC
Q 048084 642 TLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKL 721 (967)
Q Consensus 642 ~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L 721 (967)
.++|++|++++|. ++.+|. ..+++|++|++++|......|..++.+++|+.|++..+....
T Consensus 98 ----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------ 158 (487)
T 3oja_A 98 ----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------------ 158 (487)
T ss_dssp ----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE------------
T ss_pred ----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC------------
Confidence 3889999999988 666654 346889999999984433345566677777766655433221
Q ss_pred CCCCCeEEcCcCCCCChhhhHHhhc-cCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEee
Q 048084 722 NLLRECWICGLGGVSDAGEARRAEL-EKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDE 800 (967)
Q Consensus 722 ~~L~~L~i~~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 800 (967)
..+..+ ..+++|+.|+|++|.+... .....+++|++|+|++
T Consensus 159 -------------------~~~~~l~~~l~~L~~L~Ls~N~l~~~-------------------~~~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 159 -------------------VNFAELAASSDTLEHLNLQYNFIYDV-------------------KGQVVFAKLKTLDLSS 200 (487)
T ss_dssp -------------------EEGGGGGGGTTTCCEEECTTSCCCEE-------------------ECCCCCTTCCEEECCS
T ss_pred -------------------cChHHHhhhCCcccEEecCCCccccc-------------------cccccCCCCCEEECCC
Confidence 011122 2457788888887743221 2234578899999998
Q ss_pred eCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeecccc
Q 048084 801 YGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQ 851 (967)
Q Consensus 801 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~ 851 (967)
|.+.. + |..+..+++|+.|+|++|.+....+.+..+++|+.|++++++
T Consensus 201 N~l~~--~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 201 NKLAF--M-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SCCCE--E-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCCC--C-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 88877 6 445778899999999998665433347788899999998854
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=2.8e-18 Score=184.56 Aligned_cols=248 Identities=19% Similarity=0.165 Sum_probs=138.1
Q ss_pred ccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccc--ccccccc-------cCCCCcEEEccC
Q 048084 562 VKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIK--EIPTNIE-------KLLHLKYLNLFC 632 (967)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~--~lp~~i~-------~l~~L~~L~Ls~ 632 (967)
+...++|+.|++++|.+ . .|..+... |+.|+|+ + +.+. .+|..+. ++++|++|+|++
T Consensus 39 ~~~~~~L~~l~l~~n~l----~-~p~~~~~~--L~~L~L~-----~--n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 104 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE----A-DLGQFTDI--IKSLSLK-----R--LTVRAARIPSRILFGALRVLGISGLQELTLEN 104 (312)
T ss_dssp EEEEEECTTHHHHCCTT----C-CCHHHHHH--HHHCCCC-----E--EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred EccCCCceeEeeccccc----c-cHHHHHHH--Hhhcccc-----c--ccccCCCcCHHHHHHHHHhcCcCCccEEEccC
Confidence 34455666666666652 2 23323222 6666666 3 3332 2444443 566677777776
Q ss_pred CCCcc-ccchHH--hccCCCCEEecCCCCCCcccCcccccc-----ccccEEecCCCccccccccCCCCCCCCCcCCceE
Q 048084 633 QREIE-KLPETL--CELYNLERLNVSGCRNLRELPQGIGKL-----RKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFV 704 (967)
Q Consensus 633 ~~~i~-~lp~~~--~~l~~L~~L~L~~~~~l~~lp~~l~~l-----~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~ 704 (967)
|. +. .+|..+ ..+++|++|+|++|. ++.+|..+..+ ++|++|++++|. +..++.
T Consensus 105 n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~--------------- 166 (312)
T 1wwl_A 105 LE-VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSC--------------- 166 (312)
T ss_dssp EB-CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCT---------------
T ss_pred Cc-ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchH---------------
Confidence 66 44 455544 566677777777666 55556555555 666666666662 222221
Q ss_pred ecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHh
Q 048084 705 VGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLL 784 (967)
Q Consensus 705 ~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (967)
..+..+++|+.|++++|.+.+ ....+
T Consensus 167 ---------------------------------------~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~ 192 (312)
T 1wwl_A 167 ---------------------------------------EQVRVFPALSTLDLSDNPELG---------------ERGLI 192 (312)
T ss_dssp ---------------------------------------TTCCCCSSCCEEECCSCTTCH---------------HHHHH
T ss_pred ---------------------------------------HHhccCCCCCEEECCCCCcCc---------------chHHH
Confidence 112334555666666652110 11122
Q ss_pred hhC--CCCCCCCeEEEeeeCCCCC-CCCCchhhcccccceeEecCccCCCCCC--CCCCCCCccceeeccccCceEeCcc
Q 048084 785 EAL--GPPSNLKELRIDEYGGRRN-VVPINWIMSLTNLRDLSLIMWRNREHLP--PLGKLPSLEDLKIQGMQSVKRVGNE 859 (967)
Q Consensus 785 ~~l--~~~~~L~~L~L~~~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~c~~l~~~~~~ 859 (967)
..+ ..+++|++|++++|.+... .++...+..+++|+.|++++|.+....| .+..+++|++|+|++|.
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-------- 264 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-------- 264 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC--------
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc--------
Confidence 333 5667777787777776530 0111233466788888888886555442 35556777777776632
Q ss_pred ccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcC
Q 048084 860 FLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISG 939 (967)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 939 (967)
++.++. .+. ++|+.|++++| .++.+|. +..+++|++|++++
T Consensus 265 -----------------------------l~~ip~------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 265 -----------------------------LKQVPK------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp -----------------------------CSSCCS------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTT
T ss_pred -----------------------------cChhhh------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccC
Confidence 111110 111 67777888877 6676765 67778888888888
Q ss_pred Ccc
Q 048084 940 CPI 942 (967)
Q Consensus 940 c~~ 942 (967)
|+.
T Consensus 306 N~l 308 (312)
T 1wwl_A 306 NPF 308 (312)
T ss_dssp CTT
T ss_pred CCC
Confidence 864
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=4.2e-17 Score=173.21 Aligned_cols=146 Identities=23% Similarity=0.303 Sum_probs=117.9
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccc-cccc-c
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENY-IKEI-P 616 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~-~~~l-p 616 (967)
..++++.+.++.+..++. ..|..+++|++|++++|. +..+.+..|.++++|++|+|+ + +. +..+ |
T Consensus 32 ~~l~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-----~--n~~l~~~~~ 98 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPA---ASFRACRNLTILWLHSNV---LARIDAAAFTGLALLEQLDLS-----D--NAQLRSVDP 98 (285)
T ss_dssp TTCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-----S--CTTCCCCCT
T ss_pred CCceEEEeeCCcCCccCH---HHcccCCCCCEEECCCCc---cceeCHhhcCCccCCCEEeCC-----C--CCCccccCH
Confidence 689999999999887763 467899999999999998 445567889999999999999 6 43 6666 6
Q ss_pred cccccCCCCcEEEccCCCCcccc-chHHhccCCCCEEecCCCCCCcccCcc-ccccccccEEecCCCccccccccC-CCC
Q 048084 617 TNIEKLLHLKYLNLFCQREIEKL-PETLCELYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRTESLRYLPVG-IEE 693 (967)
Q Consensus 617 ~~i~~l~~L~~L~Ls~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~-~~~ 693 (967)
..+..+++|++|++++|. +..+ |..+.++++|++|++++|. ++.+|.. +..+++|++|++++| .+..+|.. +..
T Consensus 99 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 175 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRG 175 (285)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred HHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHHHhcC
Confidence 778999999999999999 7776 5678899999999999998 7777654 889999999999999 55554432 444
Q ss_pred CCCCCcC
Q 048084 694 LIRLRGV 700 (967)
Q Consensus 694 l~~L~~L 700 (967)
+++|+.|
T Consensus 176 l~~L~~L 182 (285)
T 1ozn_A 176 LHSLDRL 182 (285)
T ss_dssp CTTCCEE
T ss_pred ccccCEE
Confidence 4444433
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=8.9e-19 Score=207.75 Aligned_cols=137 Identities=16% Similarity=0.077 Sum_probs=89.1
Q ss_pred ccEEEEEEEecCCCCCCCccccccc-CCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVK-GLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~ 617 (967)
+.++++.+.++.+.... +..+. .+++|++|++++|... ....++..+.++++|++|+|+++.+++ .....++.
T Consensus 105 ~~L~~L~L~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDC---LELIAKSFKNFKVLVLSSCEGF-STDGLAAIAATCRNLKELDLRESDVDD--VSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCBCCHHH---HHHHHHHCTTCCEEEEESCEEE-EHHHHHHHHHHCTTCCEEECTTCEEEC--CCGGGGGG
T ss_pred CCCCeEEeeCcEEcHHH---HHHHHHhCCCCcEEeCCCcCCC-CHHHHHHHHHhCCCCCEEeCcCCccCC--cchHHHHH
Confidence 46788888877654211 12333 5889999999988421 111245556789999999998222111 11122333
Q ss_pred ccccCCCCcEEEccCCC-Ccc--ccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCC
Q 048084 618 NIEKLLHLKYLNLFCQR-EIE--KLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRT 681 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~-~i~--~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~ 681 (967)
....+++|++|++++|. .+. .++..+..+++|++|++++|..++.+|..+.++++|++|+++.+
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 34467789999999885 121 23343456799999999998667778878888899999987655
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=4.9e-17 Score=174.89 Aligned_cols=221 Identities=20% Similarity=0.176 Sum_probs=144.3
Q ss_pred ccEEEeccCCccchhccchhhhc-------cCCcceEEEecccCccccccccc-cccccc--ccCCCCcEEEccCCCCcc
Q 048084 568 LRSLLVESNEYSWSRVILPQLFD-------KLICLRALKLEVRGWRSCENYIK-EIPTNI--EKLLHLKYLNLFCQREIE 637 (967)
Q Consensus 568 Lr~L~l~~~~~~~~~~~~~~~~~-------~l~~L~~L~L~~~~~~~c~~~~~-~lp~~i--~~l~~L~~L~Ls~~~~i~ 637 (967)
|+.|++++|.+... ..|..+. ++++|++|+|+ + +.+. .+|..+ +.+++|++|+|++|. +.
T Consensus 65 L~~L~L~~n~l~~~--~~~~~~~~~~~~~~~l~~L~~L~L~-----~--n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~ 134 (312)
T 1wwl_A 65 IKSLSLKRLTVRAA--RIPSRILFGALRVLGISGLQELTLE-----N--LEVTGTAPPPLLEATGPDLNILNLRNVS-WA 134 (312)
T ss_dssp HHHCCCCEEEEEEE--ECBHHHHHHHHHHHTTSCCCEEEEE-----E--EBCBSCCCCCSSSCCSCCCSEEEEESCB-CS
T ss_pred HhhcccccccccCC--CcCHHHHHHHHHhcCcCCccEEEcc-----C--CcccchhHHHHHHhcCCCccEEEccCCC-Cc
Confidence 88999999875322 2344343 79999999999 6 5555 577776 899999999999999 88
Q ss_pred ccchHHhcc-----CCCCEEecCCCCCCcccC-ccccccccccEEecCCCccccc--cccCC--CCCCCCCcCCceEecC
Q 048084 638 KLPETLCEL-----YNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRY--LPVGI--EELIRLRGVTKFVVGG 707 (967)
Q Consensus 638 ~lp~~~~~l-----~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~--~p~~~--~~l~~L~~L~~~~~~~ 707 (967)
.+|..+..+ ++|++|+|++|. ++.+| ..++++++|++|++++|..... +|..+ +.+++|+.|++..+..
T Consensus 135 ~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 135 TRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp SSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred chhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 888888887 999999999999 66555 7899999999999999953332 22222 4444444444332211
Q ss_pred cCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhC
Q 048084 708 GYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEAL 787 (967)
Q Consensus 708 ~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 787 (967)
..........+..+++|+.|++++|.+..... ...+
T Consensus 214 ----------------------------~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------~~~~ 249 (312)
T 1wwl_A 214 ----------------------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAG----------------APSC 249 (312)
T ss_dssp ----------------------------CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC----------------CSCC
T ss_pred ----------------------------cchHHHHHHHHhcCCCCCEEECCCCcCCcccc----------------hhhh
Confidence 11112222334456677777777764332110 1223
Q ss_pred CCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeecc
Q 048084 788 GPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQG 849 (967)
Q Consensus 788 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 849 (967)
..+++|++|+|++|.+.. + |.++. ++|+.|+|++|.+.. +|.+..+++|++|+|++
T Consensus 250 ~~l~~L~~L~Ls~N~l~~--i-p~~~~--~~L~~L~Ls~N~l~~-~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQ--V-PKGLP--AKLSVLDLSYNRLDR-NPSPDELPQVGNLSLKG 305 (312)
T ss_dssp CCCTTCCEEECTTSCCSS--C-CSSCC--SEEEEEECCSSCCCS-CCCTTTSCEEEEEECTT
T ss_pred hhcCCCCEEECCCCccCh--h-hhhcc--CCceEEECCCCCCCC-ChhHhhCCCCCEEeccC
Confidence 345677777777776664 5 44443 677777777774433 35566677777777766
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=2.3e-16 Score=166.56 Aligned_cols=204 Identities=23% Similarity=0.160 Sum_probs=124.6
Q ss_pred CCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-cccccCCCCcEEEccCCCCccccc-hHH
Q 048084 566 RGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEKLLHLKYLNLFCQREIEKLP-ETL 643 (967)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~l~~L~~L~Ls~~~~i~~lp-~~~ 643 (967)
++|++|++++|. +..+.+..|.++++|++|+|+ + +.+..++ ..+.++++|++|+|++|. +..++ ..+
T Consensus 28 ~~l~~L~ls~n~---l~~~~~~~~~~l~~L~~L~l~-----~--n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLS-----R--CEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF 96 (276)
T ss_dssp TTCCEEECTTCC---CCEECTTTTTTCTTCSEEECT-----T--CCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred CCccEEECCCCc---ccccCHhHhccccCCcEEECC-----C--CcCCccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence 467888888887 444455567788888888887 5 4555554 357778888888888887 66665 457
Q ss_pred hccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCccccc--cccCCCCCCCCCcCCceEecCcCCCccCcccccc
Q 048084 644 CELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTESLRY--LPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKK 720 (967)
Q Consensus 644 ~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~ 720 (967)
.++++|++|++++|. +..++. .+..+++|++|++++| .+.. +|..+..+++|+.|++..+.........+..+.+
T Consensus 97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 778888888888877 555544 5777888888888877 3333 4556666666666655544332211112222222
Q ss_pred CCCCCCeEEcCcCCCCChhhhHHhhccCCCCCC-cEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEe
Q 048084 721 LNLLRECWICGLGGVSDAGEARRAELEKKKNLF-KLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRID 799 (967)
Q Consensus 721 L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 799 (967)
+ +.|. .|++++|.+.. ++.......+|++|+++
T Consensus 175 L----------------------------~~l~l~L~ls~n~l~~------------------~~~~~~~~~~L~~L~L~ 208 (276)
T 2z62_A 175 M----------------------------PLLNLSLDLSLNPMNF------------------IQPGAFKEIRLKELALD 208 (276)
T ss_dssp C----------------------------TTCCEEEECCSSCCCE------------------ECTTSSCSCCEEEEECC
T ss_pred c----------------------------cccceeeecCCCcccc------------------cCccccCCCcccEEECC
Confidence 2 2222 45555553211 11222233467777777
Q ss_pred eeCCCCCCCCCchhhcccccceeEecCccCC
Q 048084 800 EYGGRRNVVPINWIMSLTNLRDLSLIMWRNR 830 (967)
Q Consensus 800 ~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 830 (967)
+|.+.. +++..+..+++|+.|++++|.+.
T Consensus 209 ~n~l~~--~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 209 TNQLKS--VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SSCCSC--CCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCceee--cCHhHhcccccccEEEccCCccc
Confidence 777665 54555667777777777777443
No 77
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.65 E-value=9.6e-15 Score=160.31 Aligned_cols=293 Identities=13% Similarity=0.115 Sum_probs=179.4
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC------C
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF------D 247 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~ 247 (967)
..+..|+||++++++|.+++.. + +++.|+|++|+|||||++++++.. . ++|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3556799999999999999853 1 689999999999999999998752 1 6788765432 5
Q ss_pred HHHHHHHHHHHhcc-----------------CC-CCCCChHHHHHHHHHHhcc-CcceEeecCCCCCCh-------hhHH
Q 048084 248 EFRIAKAIIEALTD-----------------SA-SNFGEFQSLMQRIQKHVAR-KKLLLVLDDVWNENF-------YKWE 301 (967)
Q Consensus 248 ~~~~~~~i~~~l~~-----------------~~-~~~~~~~~~~~~l~~~l~~-~r~LlvlDdv~~~~~-------~~~~ 301 (967)
...+++.+.+.+.. .. .......++...+.+.... ++.+||+||++..+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 56666666665432 00 0113456666666666543 489999999977432 2233
Q ss_pred HHHhhhcCCCCCcEEEEecCChhH-Hhh---------h-CC-cceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHH
Q 048084 302 QFNNCLKNCLHGSKILITTRKEAI-ARI---------M-GS-IDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIG 369 (967)
Q Consensus 302 ~l~~~l~~~~~gs~iliTtr~~~v-~~~---------~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 369 (967)
.+...+.. ..+.++|+|++.... ... . +. ...+.+.+|+.+|+.+++.......+... ..+.+
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~----~~~~~ 228 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV----PENEI 228 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHH
Confidence 34443332 246789999887643 221 1 11 24789999999999999987543222111 12357
Q ss_pred HHHHHHcCCChhHHHHHHHHHccCCCHHHHHH-HHhhhhhhhhhhcccchhHHH-HhHhcCChhhHHHHhhhccCCCCcc
Q 048084 370 REIVGKCKGLPLAAKTIASLLRSKNTRKEWQN-ILESEIWELEAVKKGLLAPLL-LSYNELPSKVKHCFSYCAVFPKDYE 447 (967)
Q Consensus 370 ~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~~l~-~sy~~L~~~~k~~~~~~~~fp~~~~ 447 (967)
.+|++.++|+|+++..++..+....+...+.. ..+... ..+...+. +.+ . ++..+..+..+|. . .
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~l~~-~-~~~~~~~l~~la~-g---~ 295 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK-------GLIMGELEELRR-R-SPRYVDILRAIAL-G---Y 295 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHH-H-CHHHHHHHHHHHT-T---C
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH-------HHHHHHHHHHHh-C-ChhHHHHHHHHHh-C---C
Confidence 88999999999999999876532222222211 111100 00111111 112 2 7888899988887 2 2
Q ss_pred cCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhCCCccccCCCCCCCeeeEEe-cchHHHHH
Q 048084 448 MWKDKLIELWMAQGFLNNKRNKEMAEIGEEYFNVLASRSFFQDFGRGYDGEIYDCKM-HDIVHDFA 512 (967)
Q Consensus 448 i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~-hd~i~~~~ 512 (967)
++...+.....+.. - +.+ ......+++.|.+.+++.... + .|++ |.+++++.
T Consensus 296 ~~~~~l~~~~~~~~-~----~~~-~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 296 NRWSLIRDYLAVKG-T----KIP-EPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp CSHHHHHHHHHHTT-C----CCC-HHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHHh-C----CCC-HHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHH
Confidence 34555554432211 0 111 234678899999999997642 1 2444 66777664
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=1.3e-15 Score=156.79 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=47.2
Q ss_pred ccccccccccCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccCc-cccccccccEEecCC
Q 048084 612 IKEIPTNIEKLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDR 680 (967)
Q Consensus 612 ~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~ 680 (967)
+..+|. +. .+|++|++++|. ++.+|. .+.++++|++|++++|..++.+|. .+.++++|++|++++
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred ccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 666776 43 378888888887 777765 577788888888888754666654 577778888888876
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=3.8e-16 Score=167.27 Aligned_cols=191 Identities=20% Similarity=0.279 Sum_probs=117.0
Q ss_pred cCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchH
Q 048084 563 KGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPET 642 (967)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~ 642 (967)
..+++|++|++++|... . ++ .+..+++|++|+|+ + +.+..++. +..+++|++|+|++|. +..+|.
T Consensus 38 ~~l~~L~~L~l~~~~i~---~-l~-~~~~l~~L~~L~L~-----~--n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~- 102 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT---T-IE-GVQYLNNLIGLELK-----D--NQITDLAP-LKNLTKITELELSGNP-LKNVSA- 102 (308)
T ss_dssp HHHHTCCEEECTTSCCC---C-CT-TGGGCTTCCEEECC-----S--SCCCCCGG-GTTCCSCCEEECCSCC-CSCCGG-
T ss_pred HHcCCcCEEEeeCCCcc---C-ch-hhhccCCCCEEEcc-----C--CcCCCChh-HccCCCCCEEEccCCc-CCCchh-
Confidence 45667777777776632 2 23 26667777777776 5 44555655 6677777777777776 666653
Q ss_pred HhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCC
Q 048084 643 LCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLN 722 (967)
Q Consensus 643 ~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 722 (967)
+..+++|++|++++|. ++.+|. +..+++|++|++++| .+..++.
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--------------------------------- 146 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLN-QITNISP--------------------------------- 146 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGG---------------------------------
T ss_pred hcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCC-ccCcCcc---------------------------------
Confidence 6667777777777776 555543 666777777777666 2222221
Q ss_pred CCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeC
Q 048084 723 LLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYG 802 (967)
Q Consensus 723 ~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 802 (967)
+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.
T Consensus 147 -----------------------l~~l~~L~~L~l~~n~l~~------------------~-~~l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 147 -----------------------LAGLTNLQYLSIGNAQVSD------------------L-TPLANLSKLTTLKADDNK 184 (308)
T ss_dssp -----------------------GGGCTTCCEEECCSSCCCC------------------C-GGGTTCTTCCEEECCSSC
T ss_pred -----------------------ccCCCCccEEEccCCcCCC------------------C-hhhcCCCCCCEEECCCCc
Confidence 2233455555555553221 1 114556777777777777
Q ss_pred CCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeecccc
Q 048084 803 GRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQ 851 (967)
Q Consensus 803 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~ 851 (967)
+.. + + .+..+++|+.|++++|.+. .++.+..+++|+.|++++++
T Consensus 185 l~~--~-~-~l~~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 185 ISD--I-S-PLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCC--C-G-GGGGCTTCCEEECTTSCCC-BCGGGTTCTTCCEEEEEEEE
T ss_pred cCc--C-h-hhcCCCCCCEEEccCCccC-ccccccCCCCCCEEEccCCe
Confidence 665 4 2 2667777888888777443 34456777778888877743
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=3.4e-15 Score=156.92 Aligned_cols=81 Identities=28% Similarity=0.422 Sum_probs=41.1
Q ss_pred ccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCcc-cc
Q 048084 590 DKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQG-IG 668 (967)
Q Consensus 590 ~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-l~ 668 (967)
..+++|+.|+++ + +.+..++ .++.+++|++|+|++|. +..++ .+..+++|++|++++|. ++.+|.. +.
T Consensus 38 ~~l~~L~~L~l~-----~--~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 106 (272)
T 3rfs_A 38 NELNSIDQIIAN-----N--SDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFD 106 (272)
T ss_dssp HHHTTCCEEECT-----T--SCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred ccccceeeeeeC-----C--CCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhc
Confidence 444555555555 3 3333333 24555555555555555 55443 35555555555555555 4433332 45
Q ss_pred ccccccEEecCCC
Q 048084 669 KLRKLMYLYNDRT 681 (967)
Q Consensus 669 ~l~~L~~L~l~~~ 681 (967)
++++|++|++++|
T Consensus 107 ~l~~L~~L~L~~n 119 (272)
T 3rfs_A 107 KLTNLKELVLVEN 119 (272)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCcCCCEEECCCC
Confidence 5555555555555
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=7e-16 Score=158.92 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=72.8
Q ss_pred CCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccc-cccccc-ccccCCCCcEEEccC-CCCccccch-
Q 048084 566 RGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENY-IKEIPT-NIEKLLHLKYLNLFC-QREIEKLPE- 641 (967)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~-~~~lp~-~i~~l~~L~~L~Ls~-~~~i~~lp~- 641 (967)
++|+.|++++|. +..+.+..|.++++|++|+++ + +. +..++. .+.++++|++|++++ |. ++.+|.
T Consensus 31 ~~l~~L~l~~n~---l~~i~~~~~~~l~~L~~L~l~-----~--n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIETH---LRTIPSHAFSNLPNISRIYVS-----I--DVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPD 99 (239)
T ss_dssp TTCCEEEEESCC---CSEECTTTTTTCTTCCEEEEE-----C--CSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTT
T ss_pred CcccEEEEeCCc---ceEECHHHccCCCCCcEEeCC-----C--CCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHH
Confidence 367788888777 444455567777788888887 5 43 556653 567777788888877 66 776663
Q ss_pred HHhccCCCCEEecCCCCCCcccCcccccccccc---EEecCCCccccc
Q 048084 642 TLCELYNLERLNVSGCRNLRELPQGIGKLRKLM---YLYNDRTESLRY 686 (967)
Q Consensus 642 ~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~---~L~l~~~~~~~~ 686 (967)
.+.++++|++|++++|. ++.+|. +..+++|+ +|++++|..+..
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred HhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhh
Confidence 46677777777777776 666765 66666666 777776633333
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=5.9e-15 Score=165.94 Aligned_cols=305 Identities=12% Similarity=0.012 Sum_probs=182.2
Q ss_pred CCCccccchhhHHHHHHHH-hcCCCCCCCCCEEEEE--EccCCCcHHHHHHHHHcCcccc---ccCC-ceEEEEecCCCC
Q 048084 175 DESEIFGREDEKNDLVNRL-ICEGSKEQKGPRIISL--VGMGGIGKTTLAQFAYNNGDVK---KYFD-ERIWVCVSDPFD 247 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L-~~~~~~~~~~~~vv~i--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~ 247 (967)
.+..|+||++++++|.+.+ ...........+.+.| +|++|+||||||+.+++..... ..+. .++|+.+....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3467999999999999988 4321100023467777 9999999999999999853211 0122 467888777778
Q ss_pred HHHHHHHHHHHhccCCCC-CCChHHHHHHHHHHhc--cCcceEeecCCCCCC------hhhHHHHHhhhcCC---C--CC
Q 048084 248 EFRIAKAIIEALTDSASN-FGEFQSLMQRIQKHVA--RKKLLLVLDDVWNEN------FYKWEQFNNCLKNC---L--HG 313 (967)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~r~LlvlDdv~~~~------~~~~~~l~~~l~~~---~--~g 313 (967)
...++..++.+++...+. ..+..++...+.+.+. +++++||+||++... ...+..+...+... + ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 889999999998764332 2345566666666664 679999999997632 23333333333321 2 34
Q ss_pred cEEEEecCChhHHhhh--------C-CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcC------C
Q 048084 314 SKILITTRKEAIARIM--------G-SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCK------G 378 (967)
Q Consensus 314 s~iliTtr~~~v~~~~--------~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g 378 (967)
..+|+||+...+...+ . ....+.+++++.++++++|...+...... ..-..+....|++.++ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCC
Confidence 4577788765432111 1 12249999999999999997654211110 0111345778999999 9
Q ss_pred ChhHHHHHHHHHc------cC--CCHHHHHHHHhhhhhhhhhhcccchhHHHHhHhcCChhhHHHHhhhccCC--CCccc
Q 048084 379 LPLAAKTIASLLR------SK--NTRKEWQNILESEIWELEAVKKGLLAPLLLSYNELPSKVKHCFSYCAVFP--KDYEM 448 (967)
Q Consensus 379 ~Plai~~~~~~l~------~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~~~~fp--~~~~i 448 (967)
.|..+..+..... .. -+.+.+...+..... ...+.-++..||++.+.++..++.+. .+..+
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9976655543221 11 133333333221100 12233456789999999998888653 23345
Q ss_pred CHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHhCCCccccC
Q 048084 449 WKDKLIELWMAQG--FLNNKRNKEMAEIGEEYFNVLASRSFFQDFG 492 (967)
Q Consensus 449 ~~~~li~~w~a~g--~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 492 (967)
+...+...|.... ... .... .......+++.|...+++....
T Consensus 329 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYN-VKPR-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CHHHHHHHHHHHHHHHSC-CCCC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred cHHHHHHHHHHHHHhhcC-CCCC-CHHHHHHHHHHHHhCCCEEeec
Confidence 5665555442100 000 0011 1233567899999999997654
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=2.2e-15 Score=159.59 Aligned_cols=199 Identities=21% Similarity=0.139 Sum_probs=134.1
Q ss_pred cccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-ccccccCCCCcEEEccCCCCcccc
Q 048084 561 NVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIEKLLHLKYLNLFCQREIEKL 639 (967)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~~l~~L~~L~Ls~~~~i~~l 639 (967)
.+.+++++++++++++.+ .. +|..+ .+.|++|+|+ + |.+..+ |..+.++++|++|+|++|. ++.+
T Consensus 5 ~~~~l~~l~~l~~~~~~l---~~-ip~~~--~~~l~~L~L~-----~--N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 70 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNL---TA-LPPDL--PKDTTILHLS-----E--NLLYTFSLATLMPYTRLTQLNLDRAE-LTKL 70 (290)
T ss_dssp EEECSTTCCEEECTTSCC---SS-CCSCC--CTTCCEEECT-----T--SCCSEEEGGGGTTCTTCCEEECTTSC-CCEE
T ss_pred cccccCCccEEECCCCCC---Cc-CCCCC--CCCCCEEEcC-----C--CcCCccCHHHhhcCCCCCEEECCCCc-cCcc
Confidence 356788888888888873 33 23222 2678888888 5 556555 4567888888888888888 8877
Q ss_pred chHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCcccccccc-CCCCCCCCCcCCceEecCcCCCccCcccc
Q 048084 640 PETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPV-GIEELIRLRGVTKFVVGGGYDRACSLGSL 718 (967)
Q Consensus 640 p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~~l~~l 718 (967)
|.. ..+++|++|++++|. ++.+|..+..+++|++|++++| .+..+|. .+..+
T Consensus 71 ~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l------------------------ 123 (290)
T 1p9a_G 71 QVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGL------------------------ 123 (290)
T ss_dssp ECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTC------------------------
T ss_pred cCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCC------------------------
Confidence 763 788888888888887 7788888888888888888888 4444432 23333
Q ss_pred ccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEE
Q 048084 719 KKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRI 798 (967)
Q Consensus 719 ~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 798 (967)
++|+.|++++|.+.... +..+..+++|+.|+|
T Consensus 124 -------------------------------~~L~~L~L~~N~l~~~~-----------------~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 124 -------------------------------GELQELYLKGNELKTLP-----------------PGLLTPTPKLEKLSL 155 (290)
T ss_dssp -------------------------------TTCCEEECTTSCCCCCC-----------------TTTTTTCTTCCEEEC
T ss_pred -------------------------------CCCCEEECCCCCCCccC-----------------hhhcccccCCCEEEC
Confidence 34444444444322111 123445677777777
Q ss_pred eeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccc
Q 048084 799 DEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGM 850 (967)
Q Consensus 799 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c 850 (967)
++|.+.. +++..+..+++|+.|+|++|.+....+.+..+++|+.|+|+++
T Consensus 156 ~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 156 ANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred CCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 7777766 6556667788888888888855533333666778888888773
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=1.5e-16 Score=173.54 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=64.6
Q ss_pred ccEEEeccCCccchhccchhhhccC--CcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccc--cchHH
Q 048084 568 LRSLLVESNEYSWSRVILPQLFDKL--ICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEK--LPETL 643 (967)
Q Consensus 568 Lr~L~l~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~--lp~~~ 643 (967)
++.++++++.. .+..+..+ +.++.|+++ + +.+...+..+..+++|++|+|++|. +.. +|..+
T Consensus 49 ~~~l~l~~~~~------~~~~~~~~~~~~l~~L~l~-----~--n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~ 114 (336)
T 2ast_B 49 WQTLDLTGKNL------HPDVTGRLLSQGVIAFRCP-----R--SFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGIL 114 (336)
T ss_dssp SSEEECTTCBC------CHHHHHHHHHTTCSEEECT-----T--CEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHH
T ss_pred heeeccccccC------CHHHHHhhhhccceEEEcC-----C--ccccccchhhccCCCCCEEEccCCC-cCHHHHHHHH
Confidence 45666666552 23445555 677777776 4 4455555556667777777777776 542 66667
Q ss_pred hccCCCCEEecCCCCCCcccCccccccccccEEecCCC
Q 048084 644 CELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRT 681 (967)
Q Consensus 644 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~ 681 (967)
..+++|++|+|++|......|..+..+++|++|++++|
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 77777777777777633355666777777777777776
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=3e-15 Score=158.45 Aligned_cols=131 Identities=22% Similarity=0.211 Sum_probs=110.0
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++.+.+..+.+..+|..+ .++++.|++++|. +..+.+..|..+++|++|+|+ + +.+..++..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~------~~~l~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~-----~--n~l~~~~~~ 73 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL------PKDTTILHLSENL---LYTFSLATLMPYTRLTQLNLD-----R--AELTKLQVD 73 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC------CTTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECT-----T--SCCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCC------CCCCCEEEcCCCc---CCccCHHHhhcCCCCCEEECC-----C--CccCcccCC
Confidence 46778888888888887432 3789999999998 445567789999999999999 6 667777654
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccC-ccccccccccEEecCCCcccccccc
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRYLPV 689 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~ 689 (967)
+.+++|++|+|++|. +..+|..+..+++|++|++++|. ++.+| ..+.++++|++|++++| .+..+|.
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~ 141 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPP 141 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCT
T ss_pred -CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccCh
Confidence 789999999999999 99999989999999999999998 77776 56899999999999999 4555543
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=3.7e-15 Score=156.50 Aligned_cols=195 Identities=27% Similarity=0.320 Sum_probs=118.0
Q ss_pred CccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc-ccccCCCCcEEEccCCCCccccchH-Hh
Q 048084 567 GLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT-NIEKLLHLKYLNLFCQREIEKLPET-LC 644 (967)
Q Consensus 567 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~-~i~~l~~L~~L~Ls~~~~i~~lp~~-~~ 644 (967)
++++++++++.+. . +|..+ .+.|+.|+|+ + +.+..+|. .+.++++|++|+|++|. +..+|.. +.
T Consensus 17 ~~~~l~~~~~~l~---~-ip~~~--~~~l~~L~l~-----~--n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLT---A-IPSNI--PADTKKLDLQ-----S--NKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFK 82 (270)
T ss_dssp TTTEEECTTSCCS---S-CCSCC--CTTCSEEECC-----S--SCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTS
T ss_pred CCCEEEccCCCCC---c-cCCCC--CCCCCEEECc-----C--CCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhc
Confidence 4567777776632 2 23212 1467777777 5 44555553 56677777777777776 6666654 35
Q ss_pred ccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCC
Q 048084 645 ELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNL 723 (967)
Q Consensus 645 ~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~ 723 (967)
++++|++|+|++|. ++.+|. .+..+++|++|++++| .+..++..
T Consensus 83 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--------------------------------- 127 (270)
T 2o6q_A 83 ELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN-QLKSLPPR--------------------------------- 127 (270)
T ss_dssp SCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTT---------------------------------
T ss_pred CCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC-ccCeeCHH---------------------------------
Confidence 67777777777776 555553 3566777777777766 22222211
Q ss_pred CCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCC
Q 048084 724 LRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGG 803 (967)
Q Consensus 724 L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 803 (967)
.+..+++|+.|++++|.+.... ...+..+++|++|+|++|.+
T Consensus 128 ---------------------~~~~l~~L~~L~Ls~n~l~~~~-----------------~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 128 ---------------------VFDSLTKLTYLSLGYNELQSLP-----------------KGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp ---------------------TTTTCTTCCEEECCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCC
T ss_pred ---------------------HhCcCcCCCEEECCCCcCCccC-----------------HhHccCCcccceeEecCCcC
Confidence 1223445556666655332211 12345667777777777777
Q ss_pred CCCCCCCchhhcccccceeEecCccCCCCCCC-CCCCCCccceeeccc
Q 048084 804 RRNVVPINWIMSLTNLRDLSLIMWRNREHLPP-LGKLPSLEDLKIQGM 850 (967)
Q Consensus 804 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~c 850 (967)
.. +++..+..+++|+.|+|++|.+....+. +..+++|+.|+|+++
T Consensus 170 ~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 170 KR--VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp SC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cE--eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 66 6456677788888888888855543333 667788888888774
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=3.4e-15 Score=156.93 Aligned_cols=195 Identities=25% Similarity=0.329 Sum_probs=135.9
Q ss_pred cccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccc
Q 048084 561 NVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLP 640 (967)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp 640 (967)
.+..+++|+.|.+++|... . ++ .+..+++|++|+|+ + +.+..++ .++++++|++|+|++|. ++.+|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~---~-~~-~l~~l~~L~~L~l~-----~--n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~ 101 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIK---S-VQ-GIQYLPNVRYLALG-----G--NKLHDIS-ALKELTNLTYLILTGNQ-LQSLP 101 (272)
T ss_dssp CHHHHTTCCEEECTTSCCC---C-CT-TGGGCTTCCEEECT-----T--SCCCCCG-GGTTCTTCCEEECTTSC-CCCCC
T ss_pred ccccccceeeeeeCCCCcc---c-cc-ccccCCCCcEEECC-----C--CCCCCch-hhcCCCCCCEEECCCCc-cCccC
Confidence 3456788899999988743 2 22 37889999999998 6 5566654 68889999999999998 88777
Q ss_pred hH-HhccCCCCEEecCCCCCCcccCcc-ccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCcccc
Q 048084 641 ET-LCELYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSL 718 (967)
Q Consensus 641 ~~-~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l 718 (967)
.. +.++++|++|++++|. ++.+|.. +..+++|++|++++| .+..+|...
T Consensus 102 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--------------------------- 152 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGV--------------------------- 152 (272)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---------------------------
T ss_pred hhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHH---------------------------
Confidence 54 6889999999999998 6666544 788999999999988 444333211
Q ss_pred ccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEE
Q 048084 719 KKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRI 798 (967)
Q Consensus 719 ~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 798 (967)
+..+++|+.|++++|.+.... +..+..+++|++|++
T Consensus 153 ---------------------------~~~l~~L~~L~l~~n~l~~~~-----------------~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 153 ---------------------------FDKLTNLTELDLSYNQLQSLP-----------------EGVFDKLTQLKDLRL 188 (272)
T ss_dssp ---------------------------TTTCTTCCEEECCSSCCCCCC-----------------TTTTTTCTTCCEEEC
T ss_pred ---------------------------hccCccCCEEECCCCCcCccC-----------------HHHhcCCccCCEEEC
Confidence 122344555555555322111 123455677888888
Q ss_pred eeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccc
Q 048084 799 DEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGM 850 (967)
Q Consensus 799 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c 850 (967)
++|.+.. +++..+..+++|+.|++++|.+. +.+|+|+.|+++.+
T Consensus 189 ~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 189 YQNQLKS--VPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWIN 232 (272)
T ss_dssp CSSCCSC--CCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHH
T ss_pred CCCcCCc--cCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHH
Confidence 8777766 65666778888888888888443 45667888877763
No 88
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.60 E-value=1.3e-15 Score=133.31 Aligned_cols=81 Identities=27% Similarity=0.418 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhc--ccCcHHHHHHHHHHHHHhhhhhhhHH
Q 048084 4 AIISPLLDQLISVAVEEAKEQVRLVTGVGKEVKKLTSTLRAIQAVLHDAEKR--QVKEETVRLWLDQLRDACYDMEDVLG 81 (967)
Q Consensus 4 ~~vs~v~~~l~~~~~~~~~~e~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~~~~ed~ld 81 (967)
|+++++++||++ ++.+|+.+..|++++++.|+++|++|++||.+|+.+ +..++.++.|+++||+++||+||++|
T Consensus 1 a~v~~ll~KL~~----ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGE----LLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999 889999999999999999999999999999999988 56789999999999999999999999
Q ss_pred HHHHHHH
Q 048084 82 EWNTARL 88 (967)
Q Consensus 82 ~~~~~~~ 88 (967)
+|.++..
T Consensus 77 ~f~~~~~ 83 (115)
T 3qfl_A 77 KFLVQVD 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998774
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=9.5e-15 Score=153.39 Aligned_cols=196 Identities=27% Similarity=0.323 Sum_probs=142.6
Q ss_pred EEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc-c
Q 048084 541 ILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN-I 619 (967)
Q Consensus 541 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~-i 619 (967)
.+.+.+..+.+..+|..+ .++|+.|++++|. +..+.+..|.++++|++|+|+ + +.+..+|.. +
T Consensus 18 ~~~l~~~~~~l~~ip~~~------~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-----~--n~l~~i~~~~~ 81 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI------PADTKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLN-----D--NKLQTLPAGIF 81 (270)
T ss_dssp TTEEECTTSCCSSCCSCC------CTTCSEEECCSSC---CSCCCTTSSSSCTTCCEEECC-----S--SCCSCCCTTTT
T ss_pred CCEEEccCCCCCccCCCC------CCCCCEEECcCCC---CCeeCHHHhcCCCCCCEEECC-----C--CccCeeChhhh
Confidence 456777777787777422 2689999999998 445566679999999999999 6 667788765 4
Q ss_pred ccCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccC-ccccccccccEEecCCCccccccccC-CCCCCC
Q 048084 620 EKLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRYLPVG-IEELIR 696 (967)
Q Consensus 620 ~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~ 696 (967)
.++++|++|+|++|. +..+|. .+.++++|++|++++|. ++.+| ..+..+++|++|++++| .+..+|.. +..+
T Consensus 82 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-- 156 (270)
T 2o6q_A 82 KELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKL-- 156 (270)
T ss_dssp SSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC--
T ss_pred cCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCC--
Confidence 789999999999999 888875 46889999999999998 66665 45789999999999998 44444432 2333
Q ss_pred CCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCc
Q 048084 697 LRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENE 776 (967)
Q Consensus 697 L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 776 (967)
++|+.|++++|.+....
T Consensus 157 -----------------------------------------------------~~L~~L~L~~n~l~~~~---------- 173 (270)
T 2o6q_A 157 -----------------------------------------------------TSLKELRLYNNQLKRVP---------- 173 (270)
T ss_dssp -----------------------------------------------------TTCCEEECCSSCCSCCC----------
T ss_pred -----------------------------------------------------cccceeEecCCcCcEeC----------
Confidence 34444444444322111
Q ss_pred hhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccC
Q 048084 777 EDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRN 829 (967)
Q Consensus 777 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 829 (967)
+..+..+++|++|+|++|.+.. +++..+..+++|+.|+|++|.+
T Consensus 174 -------~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 -------EGAFDKLTELKTLKLDNNQLKR--VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp -------TTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCB
T ss_pred -------hhHhccCCCcCEEECCCCcCCc--CCHHHhccccCCCEEEecCCCe
Confidence 1234556778888888777766 6566677888888888888854
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=4.4e-14 Score=155.51 Aligned_cols=291 Identities=12% Similarity=0.095 Sum_probs=173.1
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC-----CCHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP-----FDEF 249 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 249 (967)
.+..||||+++++.|.+ +. . +++.|+|++|+|||+|++++++.. .. ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~--------~-~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR--------A-PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC--------S-SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc--------C-CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 73 1 599999999999999999998752 21 2578887642 3445
Q ss_pred HHHHHHHHHhcc-------------CC-----C-----------CCCChHHHHHHHHHHhccCcceEeecCCCCCCh---
Q 048084 250 RIAKAIIEALTD-------------SA-----S-----------NFGEFQSLMQRIQKHVARKKLLLVLDDVWNENF--- 297 (967)
Q Consensus 250 ~~~~~i~~~l~~-------------~~-----~-----------~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~--- 297 (967)
.++..+.+.+.. .. + ......++...+.+... ++.+||+||+++.+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555555544311 00 0 12234455555544322 489999999976421
Q ss_pred -hhHHHHHhhhcCCCCCcEEEEecCChhHHh-h---------h-CC-cceeecCCCChhhHHHHHHHHhcCCCCCccchh
Q 048084 298 -YKWEQFNNCLKNCLHGSKILITTRKEAIAR-I---------M-GS-IDIISINVLSEIECWSVFELLAFSGKSMEEREN 364 (967)
Q Consensus 298 -~~~~~l~~~l~~~~~gs~iliTtr~~~v~~-~---------~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~ 364 (967)
..+..+...... ..+.++|+|++...... . . +. ...+.+.+|+.+++.+++.......+.. .+.
T Consensus 155 ~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~ 231 (357)
T 2fna_A 155 VNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID--FKD 231 (357)
T ss_dssp CCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC--CCC
T ss_pred hhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC--CCc
Confidence 223334333332 24678999999765322 1 1 11 2578999999999999998754211111 111
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHccCCCHHHHHHHHhhhhhhhhhhcccchhHHH-HhHh--cCChhhHHHHhhhcc
Q 048084 365 LEKIGREIVGKCKGLPLAAKTIASLLRSKNTRKEWQNILESEIWELEAVKKGLLAPLL-LSYN--ELPSKVKHCFSYCAV 441 (967)
Q Consensus 365 ~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~~~~~~~~ 441 (967)
...|++.++|+|+++..++..+....+...|..-+-. .. ...+...+. +.++ .+++..+..+..+|.
T Consensus 232 ----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE---YA---KKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH---HH---HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH---HH---HHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 2789999999999999998876443333333211100 00 000111121 1111 678889999999987
Q ss_pred CCCCcccCHHHHHHHHH-hcCCccccccccHHHHHHHHHHHHHhCCCccccCCCCCCCeeeEE-ecchHHHHH
Q 048084 442 FPKDYEMWKDKLIELWM-AQGFLNNKRNKEMAEIGEEYFNVLASRSFFQDFGRGYDGEIYDCK-MHDIVHDFA 512 (967)
Q Consensus 442 fp~~~~i~~~~li~~w~-a~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~-~hd~i~~~~ 512 (967)
. . +...+..... ..|. .. .......+++.|.+.+++.... + .|+ .|++++++.
T Consensus 302 -g--~--~~~~l~~~~~~~~g~-----~~-~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 -C--G--KWSDVKRALELEEGI-----EI-SDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp -C--B--CHHHHHHHHHHHHCS-----CC-CHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred -C--C--CHHHHHHHHHHhcCC-----CC-CHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 2 1 4444443221 1121 01 1234667899999999997643 1 245 467777653
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.6e-14 Score=157.81 Aligned_cols=230 Identities=16% Similarity=0.145 Sum_probs=125.6
Q ss_pred ccccccccccccCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCcccccc
Q 048084 610 NYIKEIPTNIEKLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTESLRYL 687 (967)
Q Consensus 610 ~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~ 687 (967)
+.++++|..+ ..++++|+|++|. |+.+|. .|.++++|++|+|++|..++.+|. .|.++++|.++....+..+..+
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 4556666554 2456666776666 666664 356666677777766664455553 3556666655433332244444
Q ss_pred c-cCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCC
Q 048084 688 P-VGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGD 766 (967)
Q Consensus 688 p-~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 766 (967)
+ ..+..+++|+.|++..+....... . .+....++..|++..+....
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~--------~-----------------------~~~~~~~l~~l~l~~~~~i~-- 142 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPD--------V-----------------------HKIHSLQKVLLDIQDNINIH-- 142 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCC--------C-----------------------TTCCBSSCEEEEEESCTTCC--
T ss_pred CchhhhhccccccccccccccccCCc--------h-----------------------hhcccchhhhhhhccccccc--
Confidence 3 335556666665555543322000 0 01111234445554432110
Q ss_pred cccccCCCCchhhHHHHh-hhCCCC-CCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC--CCCCCCc
Q 048084 767 EEQAGRRENEEDEDERLL-EALGPP-SNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP--LGKLPSL 842 (967)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~-~~l~~~-~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L 842 (967)
.++ ..+..+ ..++.|++++|.+.. +++..+ ...+|+.|++++|..++.+|. +..+++|
T Consensus 143 ---------------~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 143 ---------------TIERNSFVGLSFESVILWLNKNGIQE--IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp ---------------EECTTSSTTSBSSCEEEECCSSCCCE--ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred ---------------cccccchhhcchhhhhhccccccccC--CChhhc-cccchhHHhhccCCcccCCCHHHhccCccc
Confidence 011 122222 357778888887776 633333 456788888877666666665 6778888
Q ss_pred cceeeccccCceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeecc
Q 048084 843 EDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILR 915 (967)
Q Consensus 843 ~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~ 915 (967)
+.|+|+++ .++.++. ..|.+|+.|.+.++.+|+.++ .+..+++|+.+++.+
T Consensus 205 ~~LdLs~N-~l~~lp~--------------~~~~~L~~L~~l~~~~l~~lP-------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 205 VILDISRT-RIHSLPS--------------YGLENLKKLRARSTYNLKKLP-------TLEKLVALMEASLTY 255 (350)
T ss_dssp SEEECTTS-CCCCCCS--------------SSCTTCCEEECTTCTTCCCCC-------CTTTCCSCCEEECSC
T ss_pred chhhcCCC-CcCccCh--------------hhhccchHhhhccCCCcCcCC-------CchhCcChhhCcCCC
Confidence 88888873 2333332 135556666555666666554 344677777777754
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=2.2e-16 Score=172.32 Aligned_cols=256 Identities=14% Similarity=0.138 Sum_probs=158.1
Q ss_pred CcceEEEecccCcccccccccccccccccC--CCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCc-c-cCcccc
Q 048084 593 ICLRALKLEVRGWRSCENYIKEIPTNIEKL--LHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLR-E-LPQGIG 668 (967)
Q Consensus 593 ~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l--~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~-~-lp~~l~ 668 (967)
..++.|+++ + +.+. +..+..+ .++++|++++|. +...+..+..+++|++|++++|. +. . +|..+.
T Consensus 47 ~~~~~l~l~-----~--~~~~--~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~ 115 (336)
T 2ast_B 47 SLWQTLDLT-----G--KNLH--PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILS 115 (336)
T ss_dssp TTSSEEECT-----T--CBCC--HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHT
T ss_pred hhheeeccc-----c--ccCC--HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHh
Confidence 457888888 5 3333 4556666 889999999988 77666667788999999999988 54 3 777788
Q ss_pred ccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccC
Q 048084 669 KLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEK 748 (967)
Q Consensus 669 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~ 748 (967)
++++|++|++++|......+..+..+++|+.|++..+ ..+ ........+..
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~---------------------------~~l--~~~~l~~~~~~ 166 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC---------------------------SGF--SEFALQTLLSS 166 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC---------------------------BSC--CHHHHHHHHHH
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC---------------------------CCC--CHHHHHHHHhc
Confidence 8999999999988433344444555555555443322 111 11123344566
Q ss_pred CCCCCcEEEEee-cCCCCCcccccCCCCchhhHHHHhhhCCCCC-CCCeEEEeeeC--CCCCCCCCchhhcccccceeEe
Q 048084 749 KKNLFKLGLHFC-HSRDGDEEQAGRRENEEDEDERLLEALGPPS-NLKELRIDEYG--GRRNVVPINWIMSLTNLRDLSL 824 (967)
Q Consensus 749 ~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~--~~~~~~~~~~l~~l~~L~~L~L 824 (967)
+++|++|++++| .+. ...++..+..++ +|++|+|++|. .....+ +..+..+++|+.|++
T Consensus 167 ~~~L~~L~l~~~~~l~----------------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 167 CSRLDELNLSWCFDFT----------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDL 229 (336)
T ss_dssp CTTCCEEECCCCTTCC----------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEEC
T ss_pred CCCCCEEcCCCCCCcC----------------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHH-HHHHhhCCCCCEEeC
Confidence 788888888887 321 112334445567 88888888884 321123 556678888999999
Q ss_pred cCccCCC--CCCCCCCCCCccceeeccccCceEeCccccCCCCCCCCccccccccccccccccccccccccccccccccc
Q 048084 825 IMWRNRE--HLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEI 902 (967)
Q Consensus 825 ~~~~~~~--~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~ 902 (967)
++|...+ .++.+..+++|++|++++|..+.. ..+. .+..+++|+.|++++| +..-. +
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~---------~l~~~~~L~~L~l~~~--i~~~~--------~ 288 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLL---------ELGEIPTLKTLQVFGI--VPDGT--------L 288 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGGG---------GGGGCTTCCEEECTTS--SCTTC--------H
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHHH---------HHhcCCCCCEEeccCc--cCHHH--------H
Confidence 8887433 344477788888888888763221 1110 1335777777777776 22111 1
Q ss_pred ccC-cccceeeeccCccCcCCCcCC
Q 048084 903 IIM-PRLSSLQILRCLKLKALPDHL 926 (967)
Q Consensus 903 ~~l-~~L~~L~l~~c~~l~~lp~~~ 926 (967)
..+ .+|..|++++|......|..+
T Consensus 289 ~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 289 QLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp HHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred HHHHhhCcceEEecccCccccCCcc
Confidence 122 346666777663333344443
No 93
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=8.3e-17 Score=190.74 Aligned_cols=159 Identities=19% Similarity=0.135 Sum_probs=85.3
Q ss_pred ccEEEEEEEecC-CCCCCCcccccccCCCCccEEEeccCCccch-hccchhhhccCCcceEEEecccCcccccccc--cc
Q 048084 539 KKILHLMLALDR-GALIPMPIWDNVKGLRGLRSLLVESNEYSWS-RVILPQLFDKLICLRALKLEVRGWRSCENYI--KE 614 (967)
Q Consensus 539 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~--~~ 614 (967)
+.++++.+..+. +... .+...+.++++|++|++++|.+... ...++.....+++|++|+++ +|...+ ..
T Consensus 130 ~~L~~L~L~~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~-----~~~~~~~~~~ 202 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTD--GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS-----CLASEVSFSA 202 (594)
T ss_dssp TTCCEEEEESCEEEEHH--HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECT-----TCCSCCCHHH
T ss_pred CCCcEEeCCCcCCCCHH--HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEec-----ccCCcCCHHH
Confidence 466777776552 2210 0112334678888888888763211 11133334567788888887 532111 12
Q ss_pred cccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCC------CcccCccccccccccEE-ecCCCcccccc
Q 048084 615 IPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRN------LRELPQGIGKLRKLMYL-YNDRTESLRYL 687 (967)
Q Consensus 615 lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~------l~~lp~~l~~l~~L~~L-~l~~~~~~~~~ 687 (967)
++.-+.++++|++|+|++|..+..+|..+..+++|++|++..|.. +..++..+.++++|+.| .+.+. ....+
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l 281 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYL 281 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGG
T ss_pred HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhH
Confidence 222234568888888888754667777777888888887665431 22333445555555555 23222 11223
Q ss_pred ccCCCCCCCCCcCCceEe
Q 048084 688 PVGIEELIRLRGVTKFVV 705 (967)
Q Consensus 688 p~~~~~l~~L~~L~~~~~ 705 (967)
+..+..+++|+.|++..+
T Consensus 282 ~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp GGGHHHHTTCCEEECTTC
T ss_pred HHHHHhhCCCCEEEccCC
Confidence 333334455555554433
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=5.8e-16 Score=172.26 Aligned_cols=246 Identities=17% Similarity=0.087 Sum_probs=150.3
Q ss_pred ccccCCCCccEEEeccCCccchh-ccchhhhccCCcceEEEecccCccccc--ccccccccc-------cccCCCCcEEE
Q 048084 560 DNVKGLRGLRSLLVESNEYSWSR-VILPQLFDKLICLRALKLEVRGWRSCE--NYIKEIPTN-------IEKLLHLKYLN 629 (967)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~c~--~~~~~lp~~-------i~~l~~L~~L~ 629 (967)
..+..+++|++|++++|.+.... ..++..+..+++|++|+|+ +|. .....+|.. +..+++|++|+
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls-----~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-----DIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECC-----SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCc-----ccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 56678899999999999743211 1133447789999999998 421 111233443 36889999999
Q ss_pred ccCCCCccc-----cchHHhccCCCCEEecCCCCCCc-----ccCcccccc---------ccccEEecCCCccc-cccc-
Q 048084 630 LFCQREIEK-----LPETLCELYNLERLNVSGCRNLR-----ELPQGIGKL---------RKLMYLYNDRTESL-RYLP- 688 (967)
Q Consensus 630 Ls~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~l~-----~lp~~l~~l---------~~L~~L~l~~~~~~-~~~p- 688 (967)
|++|. +.. +|..+..+++|++|+|++|. ++ .++..+..+ ++|++|++++|... ..+|
T Consensus 101 Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 101 LSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp CCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred CCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 99998 665 77788999999999999998 53 233334445 89999999988422 1222
Q ss_pred --cCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCC
Q 048084 689 --VGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGD 766 (967)
Q Consensus 689 --~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 766 (967)
..+..+++|+.|++..+.... . .........+..+++|+.|+|++|.+.
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~---~-----------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~--- 229 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRP---E-----------------------GIEHLLLEGLAYCQELKVLDLQDNTFT--- 229 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCH---H-----------------------HHHHHHHTTGGGCTTCCEEECCSSCCH---
T ss_pred HHHHHHhCCCcCEEECcCCCCCH---h-----------------------HHHHHHHHHhhcCCCccEEECcCCCCC---
Confidence 223334444444333222110 0 000012225666777888888777311
Q ss_pred cccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCC--CCchhh--cccccceeEecCccCCC----CCCC-C-
Q 048084 767 EEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVV--PINWIM--SLTNLRDLSLIMWRNRE----HLPP-L- 836 (967)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~--~~~~l~--~l~~L~~L~L~~~~~~~----~l~~-l- 836 (967)
......++..+..+++|++|+|++|.+..... .+..+. .+++|+.|+|++|.+.. .+|. +
T Consensus 230 ----------~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 230 ----------HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp ----------HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 11124455666777788888888777654100 023332 27788888888886554 2444 3
Q ss_pred CCCCCccceeecccc
Q 048084 837 GKLPSLEDLKIQGMQ 851 (967)
Q Consensus 837 ~~l~~L~~L~L~~c~ 851 (967)
.++++|++|+|++|+
T Consensus 300 ~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 300 EKMPDLLFLELNGNR 314 (386)
T ss_dssp HHCTTCCEEECTTSB
T ss_pred hcCCCceEEEccCCc
Confidence 457888888888743
No 95
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=5.5e-15 Score=155.99 Aligned_cols=200 Identities=18% Similarity=0.112 Sum_probs=118.8
Q ss_pred CcceEEEecccCccccccccccccc-ccccCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccC-ccccc
Q 048084 593 ICLRALKLEVRGWRSCENYIKEIPT-NIEKLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELP-QGIGK 669 (967)
Q Consensus 593 ~~L~~L~L~~~~~~~c~~~~~~lp~-~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~ 669 (967)
+.|++|+|+ + +.+..++. .+.++++|++|+|++|. +..++. .+.++++|++|+|++|. ++.++ ..+.+
T Consensus 28 ~~l~~L~ls-----~--n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLS-----F--NPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECT-----T--CCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred CCccEEECC-----C--CcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcC
Confidence 468888888 6 55666654 67888888888888887 777664 67888888888888888 55544 56788
Q ss_pred cccccEEecCCCcccccccc-CCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccC
Q 048084 670 LRKLMYLYNDRTESLRYLPV-GIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEK 748 (967)
Q Consensus 670 l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~ 748 (967)
+++|++|++++| .+..++. .++.+++|+.|++..+..... ..+..+..
T Consensus 99 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------------~l~~~~~~ 147 (276)
T 2z62_A 99 LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSF------------------------------KLPEYFSN 147 (276)
T ss_dssp CTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCC------------------------------CCCGGGGG
T ss_pred CccccEEECCCC-CccccCchhcccCCCCCEEECcCCcccee------------------------------cCchhhcc
Confidence 888888888888 3443333 455555555554443321110 01123445
Q ss_pred CCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCC-eEEEeeeCCCCCCCCCchhhcccccceeEecCc
Q 048084 749 KKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLK-ELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMW 827 (967)
Q Consensus 749 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 827 (967)
+++|+.|++++|.+..... ..+..+..++.|. +|++++|.+.. +++..+ ...+|+.|++++|
T Consensus 148 l~~L~~L~Ls~N~l~~~~~--------------~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~-~~~~L~~L~L~~n 210 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYC--------------TDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAF-KEIRLKELALDTN 210 (276)
T ss_dssp CTTCCEEECCSSCCCEECG--------------GGGHHHHTCTTCCEEEECCSSCCCE--ECTTSS-CSCCEEEEECCSS
T ss_pred CCCCCEEECCCCCCCcCCH--------------HHhhhhhhccccceeeecCCCcccc--cCcccc-CCCcccEEECCCC
Confidence 5666667776664322110 0111122222333 66777666655 423332 3346777777777
Q ss_pred cCCCCCCC-CCCCCCccceeecc
Q 048084 828 RNREHLPP-LGKLPSLEDLKIQG 849 (967)
Q Consensus 828 ~~~~~l~~-l~~l~~L~~L~L~~ 849 (967)
.+....+. +..+++|+.|+|++
T Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCSCCCTTTTTTCCSCCEEECCS
T ss_pred ceeecCHhHhcccccccEEEccC
Confidence 54433332 56677777777766
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=3.2e-14 Score=152.74 Aligned_cols=230 Identities=17% Similarity=0.074 Sum_probs=145.3
Q ss_pred CCCCccEEEeccCCccchhcc-chhhhccCCcceEEEecccCccccccccc-cccccc--ccCCCCcEEEccCCCCccc-
Q 048084 564 GLRGLRSLLVESNEYSWSRVI-LPQLFDKLICLRALKLEVRGWRSCENYIK-EIPTNI--EKLLHLKYLNLFCQREIEK- 638 (967)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~c~~~~~-~lp~~i--~~l~~L~~L~Ls~~~~i~~- 638 (967)
....++.|.+.++........ ... +..+++|++|+|+ + +.+. ..|..+ +.+++|++|+|++|. +..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~-----~--n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~ 132 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLE-----D--LKITGTMPPLPLEATGLALSSLRLRNVS-WATG 132 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEE-----S--CCCBSCCCCCSSSCCCBCCSSCEEESCC-CSST
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEee-----C--CEeccchhhhhhhccCCCCCEEEeeccc-ccch
Confidence 344577888888764321100 111 3345679999998 6 4444 456666 889999999999998 664
Q ss_pred cc----hHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccc--cc--cCCCCCCCCCcCCceEecCcCC
Q 048084 639 LP----ETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRY--LP--VGIEELIRLRGVTKFVVGGGYD 710 (967)
Q Consensus 639 lp----~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~--~p--~~~~~l~~L~~L~~~~~~~~~~ 710 (967)
.| ..+..+++|++|+|++|......|..+..+++|++|++++|..... ++ ..++.+++|+.|++..+...
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-- 210 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-- 210 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--
T ss_pred hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--
Confidence 22 3345799999999999994344446788999999999999953321 22 22355666666655433221
Q ss_pred CccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCC
Q 048084 711 RACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPP 790 (967)
Q Consensus 711 ~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 790 (967)
.........+..+++|++|++++|.+....+. ....+..+
T Consensus 211 --------------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~--------------~~~~~~~~ 250 (310)
T 4glp_A 211 --------------------------TPTGVCAALAAAGVQPHSLDLSHNSLRATVNP--------------SAPRCMWS 250 (310)
T ss_dssp --------------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS--------------CCSSCCCC
T ss_pred --------------------------chHHHHHHHHhcCCCCCEEECCCCCCCccchh--------------hHHhccCc
Confidence 11111122245667888888888854432110 01122223
Q ss_pred CCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccc
Q 048084 791 SNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGM 850 (967)
Q Consensus 791 ~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c 850 (967)
++|++|+|++|.+.. + |..+ +++|+.|+|++|.+. .+|.+..+++|+.|+|+++
T Consensus 251 ~~L~~L~Ls~N~l~~--l-p~~~--~~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 251 SALNSLNLSFAGLEQ--V-PKGL--PAKLRVLDLSSNRLN-RAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp TTCCCEECCSSCCCS--C-CSCC--CSCCSCEECCSCCCC-SCCCTTSCCCCSCEECSST
T ss_pred CcCCEEECCCCCCCc--h-hhhh--cCCCCEEECCCCcCC-CCchhhhCCCccEEECcCC
Confidence 688888888888776 6 4444 378888888888544 4455677788888888773
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=3.9e-14 Score=151.56 Aligned_cols=189 Identities=22% Similarity=0.211 Sum_probs=151.6
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++++.+.++.+..++ .+..+++|+.|++++|.+ ..+.+ +..+++|++|+|+ + +.+..++ .
T Consensus 41 ~~L~~L~l~~~~i~~l~-----~~~~l~~L~~L~L~~n~i---~~~~~--~~~l~~L~~L~L~-----~--n~l~~~~-~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-----GVQYLNNLIGLELKDNQI---TDLAP--LKNLTKITELELS-----G--NPLKNVS-A 102 (308)
T ss_dssp HTCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCC---CCCGG--GTTCCSCCEEECC-----S--CCCSCCG-G
T ss_pred CCcCEEEeeCCCccCch-----hhhccCCCCEEEccCCcC---CCChh--HccCCCCCEEEcc-----C--CcCCCch-h
Confidence 47888999888887765 467899999999999984 33333 8999999999999 6 5577765 5
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLR 698 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 698 (967)
+..+++|++|+|++|. +..+|. +..+++|++|++++|. ++.+|. +..+++|++|++++| .+..++. +..+++|+
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLT 176 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred hcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCC
Confidence 8899999999999999 888886 8999999999999998 777765 889999999999999 6666666 88888999
Q ss_pred cCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecC
Q 048084 699 GVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHS 762 (967)
Q Consensus 699 ~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 762 (967)
.|++..+.... +..+..++.|+.|.+.+..-... . .+..+++|+.|++++|.+
T Consensus 177 ~L~l~~n~l~~-----~~~l~~l~~L~~L~L~~N~l~~~----~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 177 TLKADDNKISD-----ISPLASLPNLIEVHLKNNQISDV----S--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EEECCSSCCCC-----CGGGGGCTTCCEEECTTSCCCBC----G--GGTTCTTCCEEEEEEEEE
T ss_pred EEECCCCccCc-----ChhhcCCCCCCEEEccCCccCcc----c--cccCCCCCCEEEccCCee
Confidence 88887776543 23367777888887766432211 1 378899999999999954
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=2.4e-16 Score=175.34 Aligned_cols=276 Identities=16% Similarity=0.092 Sum_probs=172.4
Q ss_pred chhhhccCCcceEEEecccCcccccccccc-----cccccccCCCCcEEEccCCCCcc----ccchHH-------hccCC
Q 048084 585 LPQLFDKLICLRALKLEVRGWRSCENYIKE-----IPTNIEKLLHLKYLNLFCQREIE----KLPETL-------CELYN 648 (967)
Q Consensus 585 ~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~-----lp~~i~~l~~L~~L~Ls~~~~i~----~lp~~~-------~~l~~ 648 (967)
++..+..+++|++|+|+ + +.+.. ++..+..+++|++|+|++|. +. .+|..+ ..+++
T Consensus 24 l~~~l~~~~~L~~L~L~-----~--n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLS-----G--NTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp TSHHHHHCSCCCEEECT-----T--SEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHhcCCCccEEECC-----C--CCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCc
Confidence 55668899999999999 5 33433 44557789999999999985 44 345444 68999
Q ss_pred CCEEecCCCCCCcc-----cCccccccccccEEecCCCccccc----cccCCCCCCCCCcCCceEecCcCCCccCccccc
Q 048084 649 LERLNVSGCRNLRE-----LPQGIGKLRKLMYLYNDRTESLRY----LPVGIEELIRLRGVTKFVVGGGYDRACSLGSLK 719 (967)
Q Consensus 649 L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~ 719 (967)
|++|+|++|. ++. +|..+..+++|++|++++|..... ++..+..+. .. . + -.
T Consensus 96 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~---~~-----~--------~--~~ 156 (386)
T 2ca6_A 96 LHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA---VN-----K--------K--AK 156 (386)
T ss_dssp CCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH---HH-----H--------H--HH
T ss_pred ccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh---hh-----h--------h--cc
Confidence 9999999998 544 777889999999999999943211 111111110 00 0 0 00
Q ss_pred cCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhh-hCCCCCCCCeEEE
Q 048084 720 KLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLE-ALGPPSNLKELRI 798 (967)
Q Consensus 720 ~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~L 798 (967)
..+.|+.|.+.+..............+..+++|++|++++|.+.. ........ .+..+++|++|+|
T Consensus 157 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~-------------~g~~~l~~~~l~~~~~L~~L~L 223 (386)
T 2ca6_A 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP-------------EGIEHLLLEGLAYCQELKVLDL 223 (386)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH-------------HHHHHHHHTTGGGCTTCCEEEC
T ss_pred cCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH-------------hHHHHHHHHHhhcCCCccEEEC
Confidence 003344444433211101111222456678899999999994321 12222334 7788899999999
Q ss_pred eeeCCCC---CCCCCchhhcccccceeEecCccCCCC----CCC-C--CCCCCccceeeccccCceE-----eCccccCC
Q 048084 799 DEYGGRR---NVVPINWIMSLTNLRDLSLIMWRNREH----LPP-L--GKLPSLEDLKIQGMQSVKR-----VGNEFLGV 863 (967)
Q Consensus 799 ~~~~~~~---~~~~~~~l~~l~~L~~L~L~~~~~~~~----l~~-l--~~l~~L~~L~L~~c~~l~~-----~~~~~~~~ 863 (967)
++|.+.. ..+ +..+..+++|+.|+|++|.+... ++. + +.+++|++|+|++|. ++. ++..+.
T Consensus 224 s~n~l~~~g~~~l-~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~-- 299 (386)
T 2ca6_A 224 QDNTFTHLGSSAL-AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVID-- 299 (386)
T ss_dssp CSSCCHHHHHHHH-HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHH--
T ss_pred cCCCCCcHHHHHH-HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHH--
Confidence 9998731 114 56778999999999999975543 232 3 558999999999965 322 221111
Q ss_pred CCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccC
Q 048084 864 ESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRC 916 (967)
Q Consensus 864 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c 916 (967)
..+++|+.|++++|+ +...... .......+++++.+++...
T Consensus 300 ---------~~l~~L~~L~l~~N~-l~~~~~~--~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 300 ---------EKMPDLLFLELNGNR-FSEEDDV--VDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp ---------HHCTTCCEEECTTSB-SCTTSHH--HHHHHHHHHHHTCCEECCC
T ss_pred ---------hcCCCceEEEccCCc-CCcchhH--HHHHHHHhhhcCcchhhhc
Confidence 257999999999984 5433200 0001124566666666543
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=4.1e-15 Score=163.53 Aligned_cols=87 Identities=13% Similarity=-0.013 Sum_probs=47.4
Q ss_pred CCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCC-CCCCeEEEeeeCCCCCCCC--Cchhhc-ccccceeEecC
Q 048084 751 NLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPP-SNLKELRIDEYGGRRNVVP--INWIMS-LTNLRDLSLIM 826 (967)
Q Consensus 751 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~--~~~l~~-l~~L~~L~L~~ 826 (967)
+|++|++++|.+... ....+...+... ++|++|+|++|.+...... +..+.. .++|+.|+|++
T Consensus 168 ~L~~L~Ls~n~l~~~-------------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 168 NVNSLNLRGNNLASK-------------NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp TCCEEECTTSCGGGS-------------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred cccEeeecCCCCchh-------------hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 778888877743221 112233334444 4778888877776541110 122223 34777788777
Q ss_pred ccCCCCCC-----CCCCCCCccceeeccc
Q 048084 827 WRNREHLP-----PLGKLPSLEDLKIQGM 850 (967)
Q Consensus 827 ~~~~~~l~-----~l~~l~~L~~L~L~~c 850 (967)
|.+....+ .+..+++|+.|+|++|
T Consensus 235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp SCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 75443221 1456677777777764
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=7.5e-14 Score=147.90 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=26.4
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRT 681 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~ 681 (967)
+..+++|++|+|++|. +..++. +.++++|++|++++|. ++.+| .+..+++|++|++++|
T Consensus 64 ~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHN 122 (291)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECTTS
T ss_pred HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEECCCC
Confidence 4444444444444444 444443 4444444444444444 33332 2444444444444444
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=3.4e-13 Score=139.71 Aligned_cols=171 Identities=23% Similarity=0.258 Sum_probs=94.1
Q ss_pred cceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccC-ccccccc
Q 048084 594 CLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELP-QGIGKLR 671 (967)
Q Consensus 594 ~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~ 671 (967)
..++++++ + +.+..+|..+. .+|++|+|++|. +..++. .+.++++|++|+|++|. ++.++ ..+..++
T Consensus 15 ~~~~l~~~-----~--~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 83 (251)
T 3m19_A 15 GKKEVDCQ-----G--KSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLT 83 (251)
T ss_dssp GGTEEECT-----T--CCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred CCeEEecC-----C--CCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCC
Confidence 34556665 4 45556665544 466666666666 555443 46666666666666666 44333 3356666
Q ss_pred cccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCC
Q 048084 672 KLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKN 751 (967)
Q Consensus 672 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~ 751 (967)
+|++|++++| .+..+|.. .+..+++
T Consensus 84 ~L~~L~L~~n-~l~~~~~~------------------------------------------------------~~~~l~~ 108 (251)
T 3m19_A 84 ELGTLGLANN-QLASLPLG------------------------------------------------------VFDHLTQ 108 (251)
T ss_dssp TCCEEECTTS-CCCCCCTT------------------------------------------------------TTTTCTT
T ss_pred cCCEEECCCC-cccccChh------------------------------------------------------HhcccCC
Confidence 6666666666 23222211 0112233
Q ss_pred CCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCC
Q 048084 752 LFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNRE 831 (967)
Q Consensus 752 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 831 (967)
|+.|++++|.+.... ...+..+++|++|+|++|.+.. +++..+..+++|+.|+|++|.+..
T Consensus 109 L~~L~L~~N~l~~~~-----------------~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 109 LDKLYLGGNQLKSLP-----------------SGVFDRLTKLKELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CCEEECCSSCCCCCC-----------------TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCEEEcCCCcCCCcC-----------------hhHhccCCcccEEECcCCcCCc--cCHHHcCcCcCCCEEECCCCcCCc
Confidence 444444444221110 1123445666666666666655 545566777777777777775554
Q ss_pred CCCC-CCCCCCccceeecc
Q 048084 832 HLPP-LGKLPSLEDLKIQG 849 (967)
Q Consensus 832 ~l~~-l~~l~~L~~L~L~~ 849 (967)
..+. +..+++|+.|+|++
T Consensus 170 ~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCTTTTTTCTTCCEEECCS
T ss_pred cCHHHHhCCCCCCEEEeeC
Confidence 4332 66677777777776
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=6.5e-14 Score=150.34 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=39.7
Q ss_pred CCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccC
Q 048084 750 KNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRN 829 (967)
Q Consensus 750 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 829 (967)
++|++|++++|.+.. ++..+ +++|+.|+|++|.+.. + |. +..+++|+.|+|++|.+
T Consensus 251 ~~L~~L~Ls~N~l~~------------------lp~~~--~~~L~~L~Ls~N~l~~--~-~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 251 SALNSLNLSFAGLEQ------------------VPKGL--PAKLRVLDLSSNRLNR--A-PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTCCCEECCSSCCCS------------------CCSCC--CSCCSCEECCSCCCCS--C-CC-TTSCCCCSCEECSSTTT
T ss_pred CcCCEEECCCCCCCc------------------hhhhh--cCCCCEEECCCCcCCC--C-ch-hhhCCCccEEECcCCCC
Confidence 567777777774332 22222 2688999999888876 5 33 56789999999999865
Q ss_pred C
Q 048084 830 R 830 (967)
Q Consensus 830 ~ 830 (967)
.
T Consensus 307 ~ 307 (310)
T 4glp_A 307 L 307 (310)
T ss_dssp S
T ss_pred C
Confidence 4
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=2.2e-13 Score=148.75 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=59.1
Q ss_pred hCCCCCCCCeEEEee-eCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCccccCCC
Q 048084 786 ALGPPSNLKELRIDE-YGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVE 864 (967)
Q Consensus 786 ~l~~~~~L~~L~L~~-~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~ 864 (967)
......+|++|.+.+ |.+.. +++..|..+++|+.|+|++|. ++.+|. ..+.+|+.|.+.++.+++.+|.
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~--i~~~~f~~l~~L~~LdLs~N~-l~~lp~-~~~~~L~~L~~l~~~~l~~lP~------ 241 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDISRTR-IHSLPS-YGLENLKKLRARSTYNLKKLPT------ 241 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCC--CCTTTTTTEECCSEEECTTSC-CCCCCS-SSCTTCCEEECTTCTTCCCCCC------
T ss_pred hhccccchhHHhhccCCcccC--CCHHHhccCcccchhhcCCCC-cCccCh-hhhccchHhhhccCCCcCcCCC------
Confidence 334456799999975 44555 656788999999999999995 445554 3356677777777776766552
Q ss_pred CCCCCcccccccccccccccc
Q 048084 865 SDTDGSSVIAFPKLKLLRFDN 885 (967)
Q Consensus 865 ~~~~~~~~~~~~~L~~L~l~~ 885 (967)
+..|++|+.+++.+
T Consensus 242 -------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 -------LEKLVALMEASLTY 255 (350)
T ss_dssp -------TTTCCSCCEEECSC
T ss_pred -------chhCcChhhCcCCC
Confidence 23788898888865
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=1.4e-13 Score=160.16 Aligned_cols=173 Identities=19% Similarity=0.183 Sum_probs=98.4
Q ss_pred hccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCcccc
Q 048084 589 FDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIG 668 (967)
Q Consensus 589 ~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~ 668 (967)
+..+.+|+.|+++ + +.+..+| .++.|++|++|+|++|. +..+|. +..+++|++|+|++|. +..+| .+.
T Consensus 39 ~~~L~~L~~L~l~-----~--n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIAN-----N--SDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLK 106 (605)
T ss_dssp HHHHTTCCCCBCT-----T--CCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TST
T ss_pred hhcCCCCCEEECc-----C--CCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhc
Confidence 3455566666665 4 3344444 35566666666666666 555555 5666666666666665 55544 456
Q ss_pred ccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccC
Q 048084 669 KLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEK 748 (967)
Q Consensus 669 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~ 748 (967)
.+++|++|+|++| .+..++ .+..+++|+.|++..+.... ...+..
T Consensus 107 ~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~---------------------------------l~~l~~ 151 (605)
T 1m9s_A 107 DLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITD---------------------------------ITVLSR 151 (605)
T ss_dssp TCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSCCCC---------------------------------CGGGGS
T ss_pred cCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCccCC---------------------------------chhhcc
Confidence 6666666666666 233221 23333333333332211110 012445
Q ss_pred CCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCcc
Q 048084 749 KKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWR 828 (967)
Q Consensus 749 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 828 (967)
+++|+.|+|++|.+... +. +..+++|+.|+|++|.+.. + ..+..+++|+.|+|++|.
T Consensus 152 l~~L~~L~Ls~N~l~~~------------------~~-l~~l~~L~~L~Ls~N~i~~--l--~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 152 LTKLDTLSLEDNQISDI------------------VP-LAGLTKLQNLYLSKNHISD--L--RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CTTCSEEECCSSCCCCC------------------GG-GTTCTTCCEEECCSSCCCB--C--GGGTTCTTCSEEECCSEE
T ss_pred cCCCCEEECcCCcCCCc------------------hh-hccCCCCCEEECcCCCCCC--C--hHHccCCCCCEEEccCCc
Confidence 66777788877743221 11 5667888888888887766 4 356778888888888886
Q ss_pred CCC
Q 048084 829 NRE 831 (967)
Q Consensus 829 ~~~ 831 (967)
+..
T Consensus 209 l~~ 211 (605)
T 1m9s_A 209 CLN 211 (605)
T ss_dssp EEC
T ss_pred CcC
Confidence 544
No 105
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=8.6e-12 Score=138.77 Aligned_cols=296 Identities=14% Similarity=0.048 Sum_probs=180.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc----ccCCceEEEEecCCCCHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK----KYFDERIWVCVSDPFDEFRI 251 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~ 251 (967)
+..|+||+++++++.+++...-. ....+.+.|+|++|+|||++|+.+++..... +.-..++|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 47799999999999998854311 2345689999999999999999999852111 00224678888888888899
Q ss_pred HHHHHHHhccCCCC-CCChHHHHHHHHHHhc--cCcceEeecCCCCCChh--hHHHHHhhhcCC-----CCCcEEEEecC
Q 048084 252 AKAIIEALTDSASN-FGEFQSLMQRIQKHVA--RKKLLLVLDDVWNENFY--KWEQFNNCLKNC-----LHGSKILITTR 321 (967)
Q Consensus 252 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~r~LlvlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~iliTtr 321 (967)
+..++.+++...+. .....+....+...+. +++.+||+|+++..... ..+.+...+... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999998754332 2345666667777663 45889999999754221 223333333211 34556777777
Q ss_pred ChhH--------HhhhCCcceeecCCCChhhHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHcC---CChhHH-HHHHH
Q 048084 322 KEAI--------ARIMGSIDIISINVLSEIECWSVFELLAFSG-KSMEERENLEKIGREIVGKCK---GLPLAA-KTIAS 388 (967)
Q Consensus 322 ~~~v--------~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~Plai-~~~~~ 388 (967)
.... ...+. ...+.+++++.++..+++...+... .....++ +..+.+++.++ |.|..+ ..+..
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6522 11111 1478999999999999998875320 1111122 23566777777 999433 33222
Q ss_pred HH---c--cC--CCHHHHHHHHhhhhhhhhhhcccchhHHHHhHhcCChhhHHHHhhhc-cCCCCcccCHHHHHHHHHh-
Q 048084 389 LL---R--SK--NTRKEWQNILESEIWELEAVKKGLLAPLLLSYNELPSKVKHCFSYCA-VFPKDYEMWKDKLIELWMA- 459 (967)
Q Consensus 389 ~l---~--~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~~~-~fp~~~~i~~~~li~~w~a- 459 (967)
.. . +. -+.+.+...+.... ...+.-++..++++.+..+..++ .+.....+....+.+....
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 21 1 11 25566665554321 12345577889988887766555 4432234555544444321
Q ss_pred ---cCCccccccccHHHHHHHHHHHHHhCCCccccC
Q 048084 460 ---QGFLNNKRNKEMAEIGEEYFNVLASRSFFQDFG 492 (967)
Q Consensus 460 ---~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 492 (967)
.| .. .........+++.|...|++....
T Consensus 322 ~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 322 TSTLG-LE----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 22 11 112345678899999999998643
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=6.2e-13 Score=137.77 Aligned_cols=152 Identities=24% Similarity=0.325 Sum_probs=85.9
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-c
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-T 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~ 617 (967)
..++.+.+.++.+..++. ..|.++++|++|++++|. +..+.+..|..+++|++|+|+ + |.+..+| .
T Consensus 35 ~~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-----~--n~l~~~~~~ 101 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSD---ATFRGLTKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGLA-----N--NQLASLPLG 101 (251)
T ss_dssp TTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECT-----T--SCCCCCCTT
T ss_pred CCCCEEEccCCCcCccCH---hHhcCcccCCEEECCCCc---CCccCHhHhccCCcCCEEECC-----C--CcccccChh
Confidence 455666666666555442 345566666666666665 333445556666666666666 4 4455544 3
Q ss_pred ccccCCCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCcccccccc-CCCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTESLRYLPV-GIEEL 694 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l 694 (967)
.+..+++|++|+|++|. ++.+|.. +..+++|++|+|++|. ++.+|. .+..+++|++|++++| .+..+|. .+..+
T Consensus 102 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 178 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRL 178 (251)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred HhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCC
Confidence 34566666666666666 5555543 4556666666666665 555544 3556666666666666 3334433 35555
Q ss_pred CCCCcCCceEec
Q 048084 695 IRLRGVTKFVVG 706 (967)
Q Consensus 695 ~~L~~L~~~~~~ 706 (967)
++|+.|++..+.
T Consensus 179 ~~L~~L~l~~N~ 190 (251)
T 3m19_A 179 GKLQTITLFGNQ 190 (251)
T ss_dssp TTCCEEECCSCC
T ss_pred CCCCEEEeeCCc
Confidence 555555554443
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=5.6e-14 Score=154.43 Aligned_cols=237 Identities=13% Similarity=0.059 Sum_probs=138.4
Q ss_pred ccccCCCCccEEEeccCCccchhccch----hhhccCC-cceEEEecccCccccccccccc-ccccccC-----CCCcEE
Q 048084 560 DNVKGLRGLRSLLVESNEYSWSRVILP----QLFDKLI-CLRALKLEVRGWRSCENYIKEI-PTNIEKL-----LHLKYL 628 (967)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~~~~c~~~~~~l-p~~i~~l-----~~L~~L 628 (967)
..+...++|++|++++|.+ ....+ ..|..++ +|++|+|+ + |.+... +..+..+ ++|++|
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l---~~~~~~~l~~~l~~~~~~L~~L~Ls-----~--N~l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNL---YSISTVELIQAFANTPASVTSLNLS-----G--NSLGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp HHHTSCTTCCEEECTTSCG---GGSCHHHHHHHHHTCCTTCCEEECC-----S--SCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHhCCCCceEEEccCCCC---ChHHHHHHHHHHHhCCCceeEEECc-----C--CCCCHHHHHHHHHHHhccCCCccEE
Confidence 3344555688888888873 33333 5677787 88888888 5 444443 3445443 888888
Q ss_pred EccCCCCccccc-hH----Hhcc-CCCCEEecCCCCCCcccCc-c----ccc-cccccEEecCCCcccc-----ccccCC
Q 048084 629 NLFCQREIEKLP-ET----LCEL-YNLERLNVSGCRNLRELPQ-G----IGK-LRKLMYLYNDRTESLR-----YLPVGI 691 (967)
Q Consensus 629 ~Ls~~~~i~~lp-~~----~~~l-~~L~~L~L~~~~~l~~lp~-~----l~~-l~~L~~L~l~~~~~~~-----~~p~~~ 691 (967)
+|++|. ++..+ .. +..+ ++|++|+|++|. ++..+. . +.. .++|++|++++|. +. .++..+
T Consensus 86 ~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l 162 (362)
T 3goz_A 86 NLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQIL 162 (362)
T ss_dssp ECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHH
T ss_pred ECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHH
Confidence 888888 66544 32 3444 788888888888 555543 2 333 3588888888883 33 122222
Q ss_pred CCCC-CCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCC-CCCCcEEEEeecCCCCCccc
Q 048084 692 EELI-RLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKK-KNLFKLGLHFCHSRDGDEEQ 769 (967)
Q Consensus 692 ~~l~-~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~ 769 (967)
..++ +|+.|++..+.... .........+... ++|+.|+|++|.+...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~---------------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~---- 211 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLAS---------------------------KNCAELAKFLASIPASVTSLDLSANLLGLK---- 211 (362)
T ss_dssp HTSCTTCCEEECTTSCGGG---------------------------SCHHHHHHHHHTSCTTCCEEECTTSCGGGS----
T ss_pred hcCCccccEeeecCCCCch---------------------------hhHHHHHHHHHhCCCCCCEEECCCCCCChh----
Confidence 2222 44444333322211 1111222334444 4788888888743221
Q ss_pred ccCCCCchhhHHHHhhhCCC-CCCCCeEEEeeeCCCCCCCCC----chhhcccccceeEecCccCCCC-------C-CCC
Q 048084 770 AGRRENEEDEDERLLEALGP-PSNLKELRIDEYGGRRNVVPI----NWIMSLTNLRDLSLIMWRNREH-------L-PPL 836 (967)
Q Consensus 770 ~~~~~~~~~~~~~~~~~l~~-~~~L~~L~L~~~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~~~-------l-~~l 836 (967)
....++..+.. +++|++|+|++|.+.. .++ ..+..+++|+.|+|++|.+... + ..+
T Consensus 212 ---------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 212 ---------SYAELAYIFSSIPNHVVSLNLCLNCLHG--PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp ---------CHHHHHHHHHHSCTTCCEEECCSSCCCC--CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred ---------HHHHHHHHHhcCCCCceEEECcCCCCCc--HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 12234444433 3588888888887765 322 2234678888888888852221 1 135
Q ss_pred CCCCCccceeecccc
Q 048084 837 GKLPSLEDLKIQGMQ 851 (967)
Q Consensus 837 ~~l~~L~~L~L~~c~ 851 (967)
..+++|+.|+++++.
T Consensus 281 ~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 281 PNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEEEECTTSCB
T ss_pred ccCCceEEEecCCCc
Confidence 677888888888743
No 108
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=1.5e-11 Score=136.97 Aligned_cols=299 Identities=14% Similarity=0.019 Sum_probs=185.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccccc-CCceEEEEecCCCCHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKY-FDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 254 (967)
+..++||+++++++.+++........+..+.+.|+|++|+||||||+.+++. .... -..++|+++....+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3679999999999999986521101122348999999999999999999875 2222 134678887777788899999
Q ss_pred HHHHhccCCCC-CCChHHHHHHHHHHhc--cCcceEeecCCCCCChhhHHHHHhhhcCCC----CCcEEEEecCChhHHh
Q 048084 255 IIEALTDSASN-FGEFQSLMQRIQKHVA--RKKLLLVLDDVWNENFYKWEQFNNCLKNCL----HGSKILITTRKEAIAR 327 (967)
Q Consensus 255 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~----~gs~iliTtr~~~v~~ 327 (967)
++..++...+. .....++...+...+. +++.+||+|+++..+......+...+.... .+..+|++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99888654322 2345666666666664 568899999998766555666666553321 3667888877654332
Q ss_pred hhC-------CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHc---------CCChhHHHHHHHHHc
Q 048084 328 IMG-------SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKC---------KGLPLAAKTIASLLR 391 (967)
Q Consensus 328 ~~~-------~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~~~~l~ 391 (967)
.+. ....+.+++++.++..+++...+...... ..-..+....+++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 221 12369999999999999998875321100 011234567888888 788765544433221
Q ss_pred ------cC--CCHHHHHHHHhhhhhhhhhhcccchhHHHHhHhcCChhhHHHHhhhccCC---CCcccCHHHHHHHHHh-
Q 048084 392 ------SK--NTRKEWQNILESEIWELEAVKKGLLAPLLLSYNELPSKVKHCFSYCAVFP---KDYEMWKDKLIELWMA- 459 (967)
Q Consensus 392 ------~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~~~~fp---~~~~i~~~~li~~w~a- 459 (967)
.. -+.+......... ....+.-.+..|+++.+.++..++.+. .+-.+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 11 1333333322211 011233456778888888877777553 2224556666655433
Q ss_pred ---cCCccccccccHHHHHHHHHHHHHhCCCccccCC
Q 048084 460 ---QGFLNNKRNKEMAEIGEEYFNVLASRSFFQDFGR 493 (967)
Q Consensus 460 ---~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~ 493 (967)
.|... .+ ......++++|...+++.....
T Consensus 322 ~~~~~~~~----~~-~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 322 CEEYGERP----RV-HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHTTCCC----CC-HHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHcCCCC----CC-HHHHHHHHHHHHhCCCeEEeee
Confidence 22111 11 2336678999999999987543
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=7.5e-13 Score=140.15 Aligned_cols=167 Identities=22% Similarity=0.237 Sum_probs=116.4
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++.+.+.++.+..++ .+..+++|++|++++|.+ ..+.+ +..+++|++|+|+ + |.+..+|.
T Consensus 46 ~~L~~L~l~~~~i~~~~-----~~~~l~~L~~L~L~~n~l---~~~~~--l~~l~~L~~L~l~-----~--n~l~~~~~- 107 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-----GIQYLPNVTKLFLNGNKL---TDIKP--LANLKNLGWLFLD-----E--NKVKDLSS- 107 (291)
T ss_dssp HTCCEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCC---CCCGG--GTTCTTCCEEECC-----S--SCCCCGGG-
T ss_pred CcccEEEccCCCcccCh-----hHhcCCCCCEEEccCCcc---CCCcc--cccCCCCCEEECC-----C--CcCCCChh-
Confidence 46777777777776654 366788888888888873 33223 7788888888887 5 55666554
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLR 698 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 698 (967)
++.+++|++|+|++|. +..++. +..+++|++|++++|. ++.+ ..+..+++|++|++++| .+..++. +..+++|+
T Consensus 108 l~~l~~L~~L~L~~n~-i~~~~~-l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~ 181 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNG-ISDING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQ 181 (291)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred hccCCCCCEEECCCCc-CCCChh-hcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCC-ccccchh-hcCCCccC
Confidence 7788888888888887 777754 7788888888888887 6666 46778888888888888 4555544 56666666
Q ss_pred cCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecC
Q 048084 699 GVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHS 762 (967)
Q Consensus 699 ~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 762 (967)
.|++..+.... + ..+..+++|+.|++++|++
T Consensus 182 ~L~L~~N~i~~--------l-------------------------~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 182 NLYLSKNHISD--------L-------------------------RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EEECCSSCCCB--------C-------------------------GGGTTCTTCSEEEEEEEEE
T ss_pred EEECCCCcCCC--------C-------------------------hhhccCCCCCEEECcCCcc
Confidence 65554332211 0 1255678899999999953
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=1.1e-12 Score=130.15 Aligned_cols=147 Identities=14% Similarity=0.157 Sum_probs=118.3
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccc-ccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKE-IPT 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~-lp~ 617 (967)
..++++.+.++.+..++ .+..+++|++|++++|.. .. +..+..+++|++|+++ + +.+.. .|.
T Consensus 44 ~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~l~~n~~---~~--~~~l~~l~~L~~L~l~-----~--n~l~~~~~~ 106 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-----GIEYAHNIKDLTINNIHA---TN--YNPISGLSNLERLRIM-----G--KDVTSDKIP 106 (197)
T ss_dssp HTCCEEEEESSCCSCCT-----TGGGCTTCSEEEEESCCC---SC--CGGGTTCTTCCEEEEE-----C--TTCBGGGSC
T ss_pred CCccEEeccCCCccChH-----HHhcCCCCCEEEccCCCC---Cc--chhhhcCCCCCEEEeE-----C--CccCcccCh
Confidence 57889999999888765 367889999999999963 22 2358899999999999 6 44554 577
Q ss_pred ccccCCCCcEEEccCCCCccc-cchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEK-LPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIR 696 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~-lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 696 (967)
.++.+++|++|++++|. +.. .|..+..+++|++|++++|..++.+| .+..+++|++|++++| .+..++ .+..+++
T Consensus 107 ~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~ 182 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPK 182 (197)
T ss_dssp CCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSS
T ss_pred hhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCC
Confidence 78999999999999999 664 67789999999999999997678887 6899999999999999 566665 6777777
Q ss_pred CCcCCceEec
Q 048084 697 LRGVTKFVVG 706 (967)
Q Consensus 697 L~~L~~~~~~ 706 (967)
|+.|++..+.
T Consensus 183 L~~L~l~~N~ 192 (197)
T 4ezg_A 183 LNQLYAFSQT 192 (197)
T ss_dssp CCEEEECBC-
T ss_pred CCEEEeeCcc
Confidence 7777766554
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=2.8e-13 Score=141.03 Aligned_cols=166 Identities=21% Similarity=0.169 Sum_probs=100.9
Q ss_pred cCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCcccccc
Q 048084 591 KLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKL 670 (967)
Q Consensus 591 ~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l 670 (967)
.+..+..++++ + +.+..++ .+..+++|++|++++|. +..+| .+..+++|++|+|++|. ++.+|. +.++
T Consensus 17 ~l~~l~~l~l~-----~--~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLG-----K--QSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDL 84 (263)
T ss_dssp HHHHHHHHHHT-----C--SCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTC
T ss_pred HHHHHHHHHhc-----C--CCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccC
Confidence 44555556665 4 4455555 46667777777777776 66666 46677777777777776 666655 6677
Q ss_pred ccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCC
Q 048084 671 RKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKK 750 (967)
Q Consensus 671 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~ 750 (967)
++|++|++++| .+..+|... . +
T Consensus 85 ~~L~~L~L~~N-~l~~l~~~~--------------------------------------------------------~-~ 106 (263)
T 1xeu_A 85 TKLEELSVNRN-RLKNLNGIP--------------------------------------------------------S-A 106 (263)
T ss_dssp SSCCEEECCSS-CCSCCTTCC--------------------------------------------------------C-S
T ss_pred CCCCEEECCCC-ccCCcCccc--------------------------------------------------------c-C
Confidence 77777777766 222222100 0 2
Q ss_pred CCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCC
Q 048084 751 NLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNR 830 (967)
Q Consensus 751 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 830 (967)
+|+.|++++|.+.. +..+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+.
T Consensus 107 ~L~~L~L~~N~l~~-------------------~~~l~~l~~L~~L~Ls~N~i~~--~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 107 CLSRLFLDNNELRD-------------------TDSLIHLKNLEILSIRNNKLKS--I--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp SCCEEECCSSCCSB-------------------SGGGTTCTTCCEEECTTSCCCB--C--GGGGGCTTCCEEECTTSCCC
T ss_pred cccEEEccCCccCC-------------------ChhhcCcccccEEECCCCcCCC--C--hHHccCCCCCEEECCCCcCc
Confidence 44445555442211 1234556677777777777665 4 25667788888888887544
Q ss_pred CCCCCCCCCCCccceeeccc
Q 048084 831 EHLPPLGKLPSLEDLKIQGM 850 (967)
Q Consensus 831 ~~l~~l~~l~~L~~L~L~~c 850 (967)
.. +.+..+++|+.|+++++
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEE
T ss_pred ch-HHhccCCCCCEEeCCCC
Confidence 43 66777888888888774
No 112
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=3.2e-11 Score=133.91 Aligned_cols=295 Identities=11% Similarity=-0.010 Sum_probs=178.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc----c--CCceEEEEecCCC-CH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK----Y--FDERIWVCVSDPF-DE 248 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~--f~~~~wv~~~~~~-~~ 248 (967)
+..|+||+++++++.+++..... ....+.+.|+|++|+|||+||+.+++...-.. . ...++|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 36799999999999988864211 22456899999999999999999998521110 1 3356788877766 78
Q ss_pred HHHHHHHHHHhccCCC--CCCChHHHHHHHHHHhccCcceEeecCCCCCChhh-HHH-HHhhhcCCCCCcEEEEecCChh
Q 048084 249 FRIAKAIIEALTDSAS--NFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYK-WEQ-FNNCLKNCLHGSKILITTRKEA 324 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~-~~~-l~~~l~~~~~gs~iliTtr~~~ 324 (967)
..++..++..+..... ......+....+...+..++.+||+||++...... .+. +...+... .+..+|+||+...
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 8888999888843221 12334566777777777666699999996532111 122 22223222 6778888888652
Q ss_pred H----Hhhh--CCcceeecCCCChhhHHHHHHHHhcC-CCCCccchhHHHHHHHHHHHcC---CChh-HHHHHHHHH--c
Q 048084 325 I----ARIM--GSIDIISINVLSEIECWSVFELLAFS-GKSMEERENLEKIGREIVGKCK---GLPL-AAKTIASLL--R 391 (967)
Q Consensus 325 v----~~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~l--~ 391 (967)
. .... .....+.+++++.++..+++...+.. ......+ .+..+.+++.++ |.|. |+..+-... .
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 1 1111 11238999999999999999987542 1111112 233566777777 8887 444333322 1
Q ss_pred ---cCCCHHHHHHHHhhhhhhhhhhcccchhHHHHhHhcCChhhHHHHhhhccCCCCcccCHHHHHHHHHhcCCcccccc
Q 048084 392 ---SKNTRKEWQNILESEIWELEAVKKGLLAPLLLSYNELPSKVKHCFSYCAVFPKDYEMWKDKLIELWMAQGFLNNKRN 468 (967)
Q Consensus 392 ---~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~ 468 (967)
..-+.+.+...+.... ...+..+++.|+++.+..+..++....+..+. +......-..| ..
T Consensus 253 ~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~---- 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK---- 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----
T ss_pred cCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----
Confidence 1226677766655421 13456678889988887777666511101111 11111111122 11
Q ss_pred ccHHHHHHHHHHHHHhCCCccccC
Q 048084 469 KEMAEIGEEYFNVLASRSFFQDFG 492 (967)
Q Consensus 469 ~~~~~~~~~~l~~L~~~~ll~~~~ 492 (967)
.........++..|...+++....
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 112244678899999999997654
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=5.6e-13 Score=153.00 Aligned_cols=71 Identities=30% Similarity=0.454 Sum_probs=34.6
Q ss_pred CcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCcccccccc
Q 048084 593 ICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRK 672 (967)
Q Consensus 593 ~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 672 (967)
++|++|+|+ + |.+..+| +.+++|++|+|++|. ++.+|. +.+ +|++|+|++|. ++.+|. .+++
T Consensus 80 ~~L~~L~Ls-----~--N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~ 141 (571)
T 3cvr_A 80 PQITVLEIT-----Q--NALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPAL 141 (571)
T ss_dssp TTCSEEECC-----S--SCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTT
T ss_pred CCCCEEECc-----C--CCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCCc-CCCCCC---cCcc
Confidence 445555555 3 3344444 234555555555554 444554 332 55555555554 444444 3455
Q ss_pred ccEEecCCC
Q 048084 673 LMYLYNDRT 681 (967)
Q Consensus 673 L~~L~l~~~ 681 (967)
|++|++++|
T Consensus 142 L~~L~Ls~N 150 (571)
T 3cvr_A 142 LEYINADNN 150 (571)
T ss_dssp CCEEECCSS
T ss_pred ccEEeCCCC
Confidence 555555555
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=1.7e-12 Score=132.13 Aligned_cols=144 Identities=28% Similarity=0.399 Sum_probs=103.0
Q ss_pred EEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc-ccccC
Q 048084 544 LMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT-NIEKL 622 (967)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~-~i~~l 622 (967)
+....+.+..+|..+ .++|+.|++++|. +..+.+..|..+++|++|+|+ + |.+..+|. .+.++
T Consensus 24 v~c~~~~l~~ip~~~------~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~-----~--N~l~~i~~~~~~~l 87 (229)
T 3e6j_A 24 VDCRSKRHASVPAGI------PTNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLG-----S--NQLGALPVGVFDSL 87 (229)
T ss_dssp EECTTSCCSSCCSCC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-----S--SCCCCCCTTTTTTC
T ss_pred eEccCCCcCccCCCC------CCCCCEEEcCCCc---cCccCHHHhhCccCCcEEECC-----C--CCCCCcChhhcccC
Confidence 444455566666322 3778888888887 444566778888888888888 6 56677764 35778
Q ss_pred CCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCccccccccccEEecCCCcccccccc-CCCCCCCCCcC
Q 048084 623 LHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPV-GIEELIRLRGV 700 (967)
Q Consensus 623 ~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L 700 (967)
++|++|+|++|. ++.+|.. +..+++|++|+|++|. ++.+|..+..+++|++|++++| .+..+|. .+..+++|+.|
T Consensus 88 ~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 88 TQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 888888888887 7777654 5778888888888887 7788888888888888888888 5556554 36667777766
Q ss_pred CceEec
Q 048084 701 TKFVVG 706 (967)
Q Consensus 701 ~~~~~~ 706 (967)
++..+.
T Consensus 165 ~l~~N~ 170 (229)
T 3e6j_A 165 YLFGNP 170 (229)
T ss_dssp ECTTSC
T ss_pred EeeCCC
Confidence 655443
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=3.3e-13 Score=154.89 Aligned_cols=130 Identities=22% Similarity=0.252 Sum_probs=95.9
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
.+++.+.+.++.+..+|.. + +++|+.|++++|.+. . +| ..+++|++|+|+ + |.+..+|.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~----l--~~~L~~L~Ls~N~l~---~-ip---~~l~~L~~L~Ls-----~--N~l~~ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN----L--PPQITVLEITQNALI---S-LP---ELPASLEYLDAC-----D--NRLSTLPE- 117 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC----C--CTTCSEEECCSSCCS---C-CC---CCCTTCCEEECC-----S--SCCSCCCC-
T ss_pred CCccEEEeCCCCCCccCHh----H--cCCCCEEECcCCCCc---c-cc---cccCCCCEEEcc-----C--CCCCCcch-
Confidence 3677888888888777632 2 378899999988743 3 34 457889999998 6 66777777
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLR 698 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 698 (967)
+++ +|++|+|++|. ++.+|. .+++|++|+|++|. ++.+|. .+++|++|++++| .+..+|. +. ++|+
T Consensus 118 l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~ 183 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP--ESLE 183 (571)
T ss_dssp CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC-CC--TTCC
T ss_pred hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCC-CCCCcch-hh--CCCC
Confidence 655 89999999988 888887 68889999999888 777876 5788899999888 4555665 43 4454
Q ss_pred cCCce
Q 048084 699 GVTKF 703 (967)
Q Consensus 699 ~L~~~ 703 (967)
.|++.
T Consensus 184 ~L~Ls 188 (571)
T 3cvr_A 184 ALDVS 188 (571)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 44443
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=2.3e-12 Score=129.31 Aligned_cols=148 Identities=22% Similarity=0.353 Sum_probs=94.5
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++++.+.++.+..++. ..|..+++|++|++++|. +..+.+..|..+++|++|+|+ + |.+..+|..
T Consensus 28 ~~l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls-----~--n~l~~~~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPN---GVFDELTSLTQLYLGGNK---LQSLPNGVFNKLTSLTYLNLS-----T--NQLQSLPNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-----S--SCCCCCCTT
T ss_pred CCCcEEEcCCCccCcCCh---hhhcccccCcEEECCCCc---cCccChhhcCCCCCcCEEECC-----C--CcCCccCHh
Confidence 467777777777665553 345677777777777776 334455556777777777777 5 455555543
Q ss_pred -cccCCCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCcc-ccccccccEEecCCCccccccccCCCCCC
Q 048084 619 -IEKLLHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRTESLRYLPVGIEELI 695 (967)
Q Consensus 619 -i~~l~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 695 (967)
+.++++|++|+|++|. +..+|.. +..+++|++|++++|. ++.+|.. +..+++|++|++++|+.. +.++
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~ 165 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCP 165 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CCTT
T ss_pred HhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cCCC
Confidence 5677777777777777 6666653 5677777777777776 5555544 566777777777777322 2344
Q ss_pred CCCcCCceEecCc
Q 048084 696 RLRGVTKFVVGGG 708 (967)
Q Consensus 696 ~L~~L~~~~~~~~ 708 (967)
+|+.|....+...
T Consensus 166 ~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 166 GIRYLSEWINKHS 178 (208)
T ss_dssp TTHHHHHHHHHCT
T ss_pred CHHHHHHHHHhCC
Confidence 5555555544443
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=3.3e-12 Score=123.16 Aligned_cols=130 Identities=24% Similarity=0.209 Sum_probs=79.3
Q ss_pred CCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccc-cchHH
Q 048084 565 LRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEK-LPETL 643 (967)
Q Consensus 565 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~-lp~~~ 643 (967)
.++|+.|++++|.+.. ..+|..+..+++|++|+|+ + +.+..+ ..++.+++|++|+|++|. +.. +|..+
T Consensus 23 ~~~L~~L~l~~n~l~~--~~i~~~~~~l~~L~~L~l~-----~--n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 91 (168)
T 2ell_A 23 PAAVRELVLDNCKSND--GKIEGLTAEFVNLEFLSLI-----N--VGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLA 91 (168)
T ss_dssp TTSCSEEECCSCBCBT--TBCSSCCGGGGGCCEEEEE-----S--SCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHH
T ss_pred cccCCEEECCCCCCCh--hhHHHHHHhCCCCCEEeCc-----C--CCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHH
Confidence 3566677777665320 1244446666777777776 4 334444 556666777777777776 555 55555
Q ss_pred hccCCCCEEecCCCCCCcccC--ccccccccccEEecCCCcccccccc----CCCCCCCCCcCCceEecC
Q 048084 644 CELYNLERLNVSGCRNLRELP--QGIGKLRKLMYLYNDRTESLRYLPV----GIEELIRLRGVTKFVVGG 707 (967)
Q Consensus 644 ~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~~~~~~~ 707 (967)
..+++|++|++++|. ++.+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++..+..
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 567777777777766 55554 45666777777777766 4445544 456666666666665543
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=2.9e-12 Score=129.39 Aligned_cols=127 Identities=23% Similarity=0.333 Sum_probs=79.7
Q ss_pred CCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-ccccccCCCCcEEEccCCCCccccchH-H
Q 048084 566 RGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIEKLLHLKYLNLFCQREIEKLPET-L 643 (967)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~~l~~L~~L~Ls~~~~i~~lp~~-~ 643 (967)
++|+.|++++|. +..+.+..|..+++|++|+|+ + |.+..+ |..+.++++|++|+|++|. ++.+|.. +
T Consensus 32 ~~l~~L~l~~n~---i~~i~~~~~~~l~~L~~L~Ls-----~--N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNT---IKVIPPGAFSPYKKLRRIDLS-----N--NQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF 100 (220)
T ss_dssp TTCCEEECCSSC---CCEECTTSSTTCTTCCEEECC-----S--SCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCEEECCCCc---CCCcCHhHhhCCCCCCEEECC-----C--CcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHc
Confidence 567777777776 334445556777777777776 5 445554 5566677777777777776 6666653 4
Q ss_pred hccCCCCEEecCCCCCCccc-CccccccccccEEecCCCcccccccc-CCCCCCCCCcCCceEe
Q 048084 644 CELYNLERLNVSGCRNLREL-PQGIGKLRKLMYLYNDRTESLRYLPV-GIEELIRLRGVTKFVV 705 (967)
Q Consensus 644 ~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~~~~~ 705 (967)
.++++|++|+|++|. ++.+ |..+..+++|++|++++| .+..++. .+..+++|+.|++..+
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 567777777777776 4444 455666777777777777 4444443 3555666666555444
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.33 E-value=2.5e-12 Score=149.58 Aligned_cols=142 Identities=24% Similarity=0.336 Sum_probs=62.4
Q ss_pred cEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccccc
Q 048084 540 KILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNI 619 (967)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i 619 (967)
.++.|.+..+.+..++ .+..+++|+.|+|++|.+. . ++ .+..+++|+.|+|+ + |.+..++ .+
T Consensus 66 ~L~~L~Ls~N~l~~~~-----~l~~l~~L~~L~Ls~N~l~---~-l~-~l~~l~~L~~L~Ls-----~--N~l~~l~-~l 127 (605)
T 1m9s_A 66 NVTKLFLNGNKLTDIK-----PLTNLKNLGWLFLDENKIK---D-LS-SLKDLKKLKSLSLE-----H--NGISDIN-GL 127 (605)
T ss_dssp TCCEEECTTSCCCCCG-----GGGGCTTCCEEECCSSCCC---C-CT-TSTTCTTCCEEECT-----T--SCCCCCG-GG
T ss_pred CCCEEEeeCCCCCCCh-----hhccCCCCCEEECcCCCCC---C-Ch-hhccCCCCCEEEec-----C--CCCCCCc-cc
Confidence 4444444444444332 1344445555555554421 1 11 24444555555554 3 2333332 24
Q ss_pred ccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCc
Q 048084 620 EKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRG 699 (967)
Q Consensus 620 ~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 699 (967)
..|++|+.|+|++|. +..++ .+..+++|+.|+|++|. +..++. +..+++|++|+|++| .+..+| .+..+++|+.
T Consensus 128 ~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~ 201 (605)
T 1m9s_A 128 VHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDV 201 (605)
T ss_dssp GGCTTCSEEECCSSC-CCCCG-GGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSE
T ss_pred cCCCccCEEECCCCc-cCCch-hhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCC-CCCCCh-HHccCCCCCE
Confidence 444555555555554 44442 24445555555555544 333332 444555555555544 333332 2444444444
Q ss_pred CCceEe
Q 048084 700 VTKFVV 705 (967)
Q Consensus 700 L~~~~~ 705 (967)
|++..+
T Consensus 202 L~L~~N 207 (605)
T 1m9s_A 202 LELFSQ 207 (605)
T ss_dssp EECCSE
T ss_pred EEccCC
Confidence 444443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=5.7e-14 Score=162.38 Aligned_cols=196 Identities=17% Similarity=0.090 Sum_probs=122.5
Q ss_pred ccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccc------------ccccccccccccCCCCcEEE
Q 048084 562 VKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCE------------NYIKEIPTNIEKLLHLKYLN 629 (967)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~------------~~~~~lp~~i~~l~~L~~L~ 629 (967)
+..+++|+.|+|++|. +.. +|..++.|++|+.|+++ ++. +....+|..++++++|+.|+
T Consensus 345 ~~~~~~L~~L~Ls~n~---L~~-Lp~~i~~l~~L~~L~l~-----~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 345 SATDEQLFRCELSVEK---STV-LQSELESCKELQELEPE-----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp CSTTTTSSSCCCCHHH---HHH-HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred cccCccceeccCChhh---HHh-hHHHHHHHHHHHHhccc-----cchhhhhHHHHHHhcccccCCHHHHHHHHhcccCc
Confidence 4678888889998887 433 67778888999998886 311 12334566677788888887
Q ss_pred -ccCCCCccccch------HHhc--cCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcC
Q 048084 630 -LFCQREIEKLPE------TLCE--LYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGV 700 (967)
Q Consensus 630 -Ls~~~~i~~lp~------~~~~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 700 (967)
++.|. +..++. .+.. ...|++|+|++|. ++.+|. ++.+++|+.|++++| .+..+|..++.++
T Consensus 416 ~l~~n~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~----- 486 (567)
T 1dce_A 416 PMRAAY-LDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALR----- 486 (567)
T ss_dssp GGGHHH-HHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCT-----
T ss_pred chhhcc-cchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcc-cccccchhhhcCC-----
Confidence 56554 444442 1111 2358888888887 777776 888888888888887 4445554444333
Q ss_pred CceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhH
Q 048084 701 TKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDED 780 (967)
Q Consensus 701 ~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 780 (967)
+|+.|+|++|.+..
T Consensus 487 --------------------------------------------------~L~~L~Ls~N~l~~---------------- 500 (567)
T 1dce_A 487 --------------------------------------------------CLEVLQASDNALEN---------------- 500 (567)
T ss_dssp --------------------------------------------------TCCEEECCSSCCCC----------------
T ss_pred --------------------------------------------------CCCEEECCCCCCCC----------------
Confidence 44444444442211
Q ss_pred HHHhhhCCCCCCCCeEEEeeeCCCCCCCC-CchhhcccccceeEecCccCCCCCCCCC----CCCCcccee
Q 048084 781 ERLLEALGPPSNLKELRIDEYGGRRNVVP-INWIMSLTNLRDLSLIMWRNREHLPPLG----KLPSLEDLK 846 (967)
Q Consensus 781 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~l~~l~----~l~~L~~L~ 846 (967)
++ .+..+++|+.|+|++|.+.. ++ |..+..+++|+.|+|++|.+....|... .+|+|+.|+
T Consensus 501 --lp-~l~~l~~L~~L~Ls~N~l~~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 --VD-GVANLPRLQELLLCNNRLQQ--SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp --CG-GGTTCSSCCEEECCSSCCCS--SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred --Cc-ccCCCCCCcEEECCCCCCCC--CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 11 34556667777777666665 43 5667777777777777775554433322 256666664
No 121
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=7.1e-11 Score=131.27 Aligned_cols=295 Identities=14% Similarity=0.070 Sum_probs=174.1
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccccc---CCceEEEEecCCCCHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKY---FDERIWVCVSDPFDEFRI 251 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~~~~~~~~~ 251 (967)
.+..|+||+++++.+.+++..... ....+.+.|+|++|+||||||+.+++. .... -..++|+.+....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 347799999999999998864211 234568999999999999999999985 3222 235678887766677778
Q ss_pred HHHHHHHhccCCCC-CCChHHHHHHHHHHhc--cCcceEeecCCCCCC----hhhHHHHHhhhcC-CCCCcEEEEecCCh
Q 048084 252 AKAIIEALTDSASN-FGEFQSLMQRIQKHVA--RKKLLLVLDDVWNEN----FYKWEQFNNCLKN-CLHGSKILITTRKE 323 (967)
Q Consensus 252 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~r~LlvlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iliTtr~~ 323 (967)
+..++..++..... .....+....+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 88887777543221 2335565666666664 448899999996521 2334444444422 13355677777765
Q ss_pred hHHhhhC-------CcceeecCCCChhhHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHcC---CChhHHHHHHHHH-c
Q 048084 324 AIARIMG-------SIDIISINVLSEIECWSVFELLAFSGK-SMEERENLEKIGREIVGKCK---GLPLAAKTIASLL-R 391 (967)
Q Consensus 324 ~v~~~~~-------~~~~~~l~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~---g~Plai~~~~~~l-~ 391 (967)
.....+. ....+.+++++.++..+++...+.... .... ..+..+.+++.++ |.|..+..+.... .
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL---PDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4322111 124799999999999999987653111 1111 1334566777776 9998443333222 1
Q ss_pred -----c--CCCHHHHHHHHhhhhhhhhhhcccchhHHHHhHhcCChhhHHHHhhhccCCC-C-cccCHHHHHHHHH--h-
Q 048084 392 -----S--KNTRKEWQNILESEIWELEAVKKGLLAPLLLSYNELPSKVKHCFSYCAVFPK-D-YEMWKDKLIELWM--A- 459 (967)
Q Consensus 392 -----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~~~~fp~-~-~~i~~~~li~~w~--a- 459 (967)
. .-+.+.+..++.... ...+.-.+..+|+..+..+..++.+.+ + ..+....+.+.+. +
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 124555555444321 123555677888887777666653211 1 1233443333221 1
Q ss_pred -cCCccccccccHHHHHHHHHHHHHhCCCcccc
Q 048084 460 -QGFLNNKRNKEMAEIGEEYFNVLASRSFFQDF 491 (967)
Q Consensus 460 -~g~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 491 (967)
.|. .. . .......+++.|...+++...
T Consensus 321 ~~g~-~~---~-~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 321 KLGV-EA---V-TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHTC-CC---C-CHHHHHHHHHHHHHHTSEEEE
T ss_pred hcCC-CC---C-CHHHHHHHHHHHHhCCCEEEE
Confidence 121 11 1 123456789999999999764
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=9.2e-12 Score=126.65 Aligned_cols=130 Identities=24% Similarity=0.374 Sum_probs=113.6
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++.+.+.++.+..++. ..|..+++|+.|++++|. +..+.+..|..+++|++|+|+ + |.+..+|..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~N~---l~~i~~~~~~~l~~L~~L~Ls-----~--N~l~~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEP---GVFDSLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLG-----T--NQLTVLPSA 106 (229)
T ss_dssp TTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECC-----S--SCCCCCCTT
T ss_pred CCCCEEEcCCCccCccCH---HHhhCccCCcEEECCCCC---CCCcChhhcccCCCcCEEECC-----C--CcCCccChh
Confidence 689999999999887753 568899999999999998 455566778999999999999 7 677778654
Q ss_pred -cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCcc
Q 048084 619 -IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTES 683 (967)
Q Consensus 619 -i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~ 683 (967)
+..+++|++|+|++|. +..+|..+..+++|++|+|++|. ++.+|. .+..+++|++|++++|+.
T Consensus 107 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred HhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 6889999999999999 99999999999999999999998 777774 588899999999999953
No 123
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=2.8e-12 Score=127.19 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=100.1
Q ss_pred cCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccc-cch
Q 048084 563 KGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEK-LPE 641 (967)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~-lp~ 641 (967)
..+++|+.|++++|.+. . +| .+..+++|++|+++ + +.+..++ .+..+++|++|++++|. +.. .|.
T Consensus 41 ~~l~~L~~L~l~~n~i~---~-l~-~l~~l~~L~~L~l~-----~--n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~ 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT---D-LT-GIEYAHNIKDLTIN-----N--IHATNYN-PISGLSNLERLRIMGKD-VTSDKIP 106 (197)
T ss_dssp HHHHTCCEEEEESSCCS---C-CT-TGGGCTTCSEEEEE-----S--CCCSCCG-GGTTCTTCCEEEEECTT-CBGGGSC
T ss_pred hhcCCccEEeccCCCcc---C-hH-HHhcCCCCCEEEcc-----C--CCCCcch-hhhcCCCCCEEEeECCc-cCcccCh
Confidence 56788999999999843 3 34 48899999999998 6 4455554 68889999999999998 664 677
Q ss_pred HHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCCcCCceEe
Q 048084 642 TLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVV 705 (967)
Q Consensus 642 ~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~ 705 (967)
.+..+++|++|++++|......|..+..+++|++|++++|..+..+| .+..+++|+.|++..+
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 78899999999999998444577788999999999999995466665 4666677766665443
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=2.2e-12 Score=121.53 Aligned_cols=126 Identities=24% Similarity=0.208 Sum_probs=88.7
Q ss_pred CCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccc-cchH
Q 048084 564 GLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEK-LPET 642 (967)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~-lp~~ 642 (967)
..++|+.|++++|.+.. ..+|..+..+++|++|+++ + +.+..+ ..++++++|++|+|++|. +.. +|..
T Consensus 15 ~~~~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~-----~--n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTI-----N--VGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTCBCBT--TBCCSCCTTCTTCCEEECT-----T--SCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHH
T ss_pred CCccCeEEEccCCcCCh--hHHHHHHhhcCCCcEEECc-----C--CCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHH
Confidence 34678888888876320 2345567778888888887 5 445555 567778888888888887 666 7776
Q ss_pred HhccCCCCEEecCCCCCCcccC--ccccccccccEEecCCCcccccccc----CCCCCCCCCcCCc
Q 048084 643 LCELYNLERLNVSGCRNLRELP--QGIGKLRKLMYLYNDRTESLRYLPV----GIEELIRLRGVTK 702 (967)
Q Consensus 643 ~~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~~ 702 (967)
+..+++|++|++++|. ++.+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 7778888888888887 66654 66778888888888888 4555554 4566666666654
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=6.3e-12 Score=130.73 Aligned_cols=146 Identities=18% Similarity=0.157 Sum_probs=119.8
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++.+.+.++.+..++ .+..+++|+.|++++|.+ ..+.+ +..+++|++|+|+ + |.+..+|..
T Consensus 41 ~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~L~~N~i---~~~~~--l~~l~~L~~L~L~-----~--N~l~~l~~~ 103 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-----GMQFFTNLKELHLSHNQI---SDLSP--LKDLTKLEELSVN-----R--NRLKNLNGI 103 (263)
T ss_dssp TTCSEEECTTSCCCCCT-----TGGGCTTCCEEECCSSCC---CCCGG--GTTCSSCCEEECC-----S--SCCSCCTTC
T ss_pred CcCcEEECcCCCcccch-----HHhhCCCCCEEECCCCcc---CCChh--hccCCCCCEEECC-----C--CccCCcCcc
Confidence 57888888888887765 467899999999999984 34333 8999999999999 6 667777653
Q ss_pred cccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCCCCCCCCC
Q 048084 619 IEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLR 698 (967)
Q Consensus 619 i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 698 (967)
. . ++|++|+|++|. ++.+|. +..+++|++|++++|. ++.+| .+..+++|++|++++| .+..+ ..+..+++|+
T Consensus 104 ~-~-~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 104 P-S-ACLSRLFLDNNE-LRDTDS-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVN 175 (263)
T ss_dssp C-C-SSCCEEECCSSC-CSBSGG-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCC
T ss_pred c-c-CcccEEEccCCc-cCCChh-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCC
Confidence 3 3 899999999998 888875 8999999999999998 88876 7889999999999999 55555 5688888999
Q ss_pred cCCceEecCcC
Q 048084 699 GVTKFVVGGGY 709 (967)
Q Consensus 699 ~L~~~~~~~~~ 709 (967)
.|++..+....
T Consensus 176 ~L~l~~N~~~~ 186 (263)
T 1xeu_A 176 WIDLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEEEC
T ss_pred EEeCCCCcccC
Confidence 99888876554
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=7.1e-12 Score=126.51 Aligned_cols=146 Identities=19% Similarity=0.208 Sum_probs=104.6
Q ss_pred EEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccc-hhhhccCCcceEEEecccCccccccccccccc-ccc
Q 048084 543 HLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVIL-PQLFDKLICLRALKLEVRGWRSCENYIKEIPT-NIE 620 (967)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~-~i~ 620 (967)
.+.+.++.+..+|..+ .+.++.|++++|.+ ..+. +..|..+++|++|+|+ + |.+..++. .+.
T Consensus 15 ~l~~s~n~l~~iP~~~------~~~~~~L~L~~N~l---~~~~~~~~~~~l~~L~~L~L~-----~--N~i~~i~~~~~~ 78 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI------PQYTAELRLNNNEF---TVLEATGIFKKLPQLRKINFS-----N--NKITDIEEGAFE 78 (220)
T ss_dssp EEECCSSCCSSCCSCC------CTTCSEEECCSSCC---CEECCCCCGGGCTTCCEEECC-----S--SCCCEECTTTTT
T ss_pred EeEeCCCCcccCccCC------CCCCCEEEcCCCcC---CccCchhhhccCCCCCEEECC-----C--CcCCEECHHHhC
Confidence 4666667777766322 34567888888873 3332 3457888888888888 6 56666654 678
Q ss_pred cCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCccc-CccccccccccEEecCCCcccccc-ccCCCCCCCC
Q 048084 621 KLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLREL-PQGIGKLRKLMYLYNDRTESLRYL-PVGIEELIRL 697 (967)
Q Consensus 621 ~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L 697 (967)
++++|++|+|++|. +..+|. .+.++++|++|+|++|. ++.+ |..+..+++|++|++++| .+..+ |..+..+++|
T Consensus 79 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 79 GASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSL 155 (220)
T ss_dssp TCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTC
T ss_pred CCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCC
Confidence 88888888888888 777665 47788888888888888 5544 667888888888888888 44444 6667777777
Q ss_pred CcCCceEecC
Q 048084 698 RGVTKFVVGG 707 (967)
Q Consensus 698 ~~L~~~~~~~ 707 (967)
+.|++..+..
T Consensus 156 ~~L~L~~N~l 165 (220)
T 2v70_A 156 STLNLLANPF 165 (220)
T ss_dssp CEEECCSCCE
T ss_pred CEEEecCcCC
Confidence 7776665543
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=1e-11 Score=125.41 Aligned_cols=130 Identities=24% Similarity=0.347 Sum_probs=112.9
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN 618 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~ 618 (967)
..++.+.+.++.+..++. ..|..+++|+.|++++|. +..+.|..|.++++|++|+|+ + |.+..+|..
T Consensus 32 ~~l~~L~l~~n~i~~i~~---~~~~~l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-----~--N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP---GAFSPYKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLY-----G--NKITELPKS 98 (220)
T ss_dssp TTCCEEECCSSCCCEECT---TSSTTCTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECC-----S--SCCCCCCTT
T ss_pred cCCCEEECCCCcCCCcCH---hHhhCCCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECC-----C--CcCCccCHh
Confidence 589999999999987764 468899999999999998 555678889999999999999 7 778888865
Q ss_pred -cccCCCCcEEEccCCCCccccc-hHHhccCCCCEEecCCCCCCcccCc-cccccccccEEecCCCcc
Q 048084 619 -IEKLLHLKYLNLFCQREIEKLP-ETLCELYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTES 683 (967)
Q Consensus 619 -i~~l~~L~~L~Ls~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~ 683 (967)
+.++++|++|+|++|. +..++ ..+..+++|++|+|++|. ++.+|. .+..+++|++|++++|+.
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5789999999999999 88774 578899999999999999 777765 488899999999999953
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=3.3e-12 Score=123.17 Aligned_cols=132 Identities=23% Similarity=0.234 Sum_probs=111.9
Q ss_pred ccEEEEEEEecCCC--CCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccc-c
Q 048084 539 KKILHLMLALDRGA--LIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKE-I 615 (967)
Q Consensus 539 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~-l 615 (967)
..++++.+.++.+. .+| ..+..+++|+.|++++|.+. .+ ..+..+++|++|+|+ + |.+.. +
T Consensus 24 ~~L~~L~l~~n~l~~~~i~----~~~~~l~~L~~L~l~~n~l~---~~--~~~~~l~~L~~L~Ls-----~--N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIE----GLTAEFVNLEFLSLINVGLI---SV--SNLPKLPKLKKLELS-----E--NRIFGGL 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCS----SCCGGGGGCCEEEEESSCCC---CC--SSCCCCSSCCEEEEE-----S--CCCCSCC
T ss_pred ccCCEEECCCCCCChhhHH----HHHHhCCCCCEEeCcCCCCC---Ch--hhhccCCCCCEEECc-----C--CcCchHH
Confidence 67899999999887 665 45788999999999999843 32 558899999999999 6 55666 7
Q ss_pred ccccccCCCCcEEEccCCCCccccc--hHHhccCCCCEEecCCCCCCcccCc----cccccccccEEecCCCcccccccc
Q 048084 616 PTNIEKLLHLKYLNLFCQREIEKLP--ETLCELYNLERLNVSGCRNLRELPQ----GIGKLRKLMYLYNDRTESLRYLPV 689 (967)
Q Consensus 616 p~~i~~l~~L~~L~Ls~~~~i~~lp--~~~~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~l~~~~~~~~~p~ 689 (967)
|..+.++++|++|+|++|. ++.+| ..+..+++|++|++++|. ++.+|. .+..+++|++|++++| ....+|.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 7777789999999999998 99887 678999999999999998 888876 7889999999999999 5555554
No 129
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.29 E-value=6.3e-11 Score=122.55 Aligned_cols=198 Identities=13% Similarity=0.088 Sum_probs=121.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
...++||++.++.+..++.... ..+.+.|+|++|+||||+|+.+++.......+.. ..+. .... ...+
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~---~~~~-~~~~ 89 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCG---VCDN-CREI 89 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCS---CSHH-HHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCc---ccHH-HHHH
Confidence 3469999999999999996432 3358999999999999999999875221111100 0000 0000 0000
Q ss_pred HHHh-----ccCCCCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhH
Q 048084 256 IEAL-----TDSASNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAI 325 (967)
Q Consensus 256 ~~~l-----~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v 325 (967)
.... ..........+... .+.+.+ .+++.+||+||++..+...+..+...+.....+..+|+||+....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred hccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 0000 00000000111111 111111 346789999999876666777788877766667788888876431
Q ss_pred -Hh-hhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 326 -AR-IMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 326 -~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
.. .......+.+++++.++..+++...+....... ..+....|++.++|+|..+..+...+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 122346899999999999999998765432211 13447789999999999988776554
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=6.4e-12 Score=122.08 Aligned_cols=131 Identities=23% Similarity=0.201 Sum_probs=98.7
Q ss_pred cccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccc
Q 048084 561 NVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLP 640 (967)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp 640 (967)
.+.++++|+.|++++|.+. . ++......++|++|+|+ + |.+..+ ..++.+++|++|+|++|. +..+|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~---~-i~~~~~~~~~L~~L~Ls-----~--N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~ 80 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP---V-IENLGATLDQFDAIDFS-----D--NEIRKL-DGFPLLRRLKTLLVNNNR-ICRIG 80 (176)
T ss_dssp EEECTTSCEEEECTTSCCC---S-CCCGGGGTTCCSEEECC-----S--SCCCEE-CCCCCCSSCCEEECCSSC-CCEEC
T ss_pred hcCCcCCceEEEeeCCCCc---h-hHHhhhcCCCCCEEECC-----C--CCCCcc-cccccCCCCCEEECCCCc-ccccC
Confidence 4567888889999888743 3 24433334489999998 6 556666 568888889999999888 88887
Q ss_pred hHH-hccCCCCEEecCCCCCCcccCc--cccccccccEEecCCCccccccccC----CCCCCCCCcCCceEec
Q 048084 641 ETL-CELYNLERLNVSGCRNLRELPQ--GIGKLRKLMYLYNDRTESLRYLPVG----IEELIRLRGVTKFVVG 706 (967)
Q Consensus 641 ~~~-~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~----~~~l~~L~~L~~~~~~ 706 (967)
..+ ..+++|++|++++|. ++.+|. .+..+++|++|++++| .+..+|.. +..+++|+.|++..+.
T Consensus 81 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 544 888899999999888 777876 7888888999999888 45566654 6777778777776654
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=2.3e-11 Score=121.87 Aligned_cols=143 Identities=26% Similarity=0.360 Sum_probs=110.9
Q ss_pred EEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc-cccC
Q 048084 544 LMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN-IEKL 622 (967)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~-i~~l 622 (967)
+....+.+..+|. .-.++|+.|++++|. +..+.+..|..+++|++|+|+ + +.+..+|.. +.++
T Consensus 12 v~c~~~~l~~~p~------~~~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-----~--n~l~~~~~~~~~~l 75 (208)
T 2o6s_A 12 VECYSQGRTSVPT------GIPAQTTYLDLETNS---LKSLPNGVFDELTSLTQLYLG-----G--NKLQSLPNGVFNKL 75 (208)
T ss_dssp EECCSSCCSSCCS------CCCTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-----S--SCCCCCCTTTTTTC
T ss_pred EEecCCCccCCCC------CCCCCCcEEEcCCCc---cCcCChhhhcccccCcEEECC-----C--CccCccChhhcCCC
Confidence 3444555556653 224689999999998 445567778999999999999 6 667777654 6889
Q ss_pred CCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCcc-ccccccccEEecCCCccccccccC-CCCCCCCCc
Q 048084 623 LHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRTESLRYLPVG-IEELIRLRG 699 (967)
Q Consensus 623 ~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~ 699 (967)
++|++|+|++|. +..+|.. +.++++|++|++++|. ++.+|.. +..+++|++|++++| .+..+|.. +..+++|+.
T Consensus 76 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 76 TSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred CCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccE
Confidence 999999999999 8888764 6899999999999998 7777655 788999999999999 55566554 666777776
Q ss_pred CCceEe
Q 048084 700 VTKFVV 705 (967)
Q Consensus 700 L~~~~~ 705 (967)
|++..+
T Consensus 153 L~l~~N 158 (208)
T 2o6s_A 153 IWLHDN 158 (208)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 665544
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.24 E-value=2.7e-11 Score=122.27 Aligned_cols=131 Identities=19% Similarity=0.185 Sum_probs=111.2
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc-
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT- 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~- 617 (967)
..++.+.+.++.+..++.. ..|..+++|+.|++++|. +..+.+..|.++++|++|+|+ + |.+..++.
T Consensus 32 ~~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls-----~--N~l~~~~~~ 99 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNK---ITDIEEGAFEGASGVNEILLT-----S--NRLENVQHK 99 (220)
T ss_dssp TTCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-----S--SCCCCCCGG
T ss_pred CCCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCc---CCEECHHHhCCCCCCCEEECC-----C--CccCccCHh
Confidence 4678999999998876421 347899999999999998 555567789999999999999 6 66777764
Q ss_pred ccccCCCCcEEEccCCCCcccc-chHHhccCCCCEEecCCCCCCccc-CccccccccccEEecCCCcc
Q 048084 618 NIEKLLHLKYLNLFCQREIEKL-PETLCELYNLERLNVSGCRNLREL-PQGIGKLRKLMYLYNDRTES 683 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~ 683 (967)
.+.++++|++|+|++|. +..+ |..+.++++|++|+|++|. ++.+ |..+..+++|++|++++|+.
T Consensus 100 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp GGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred HhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 58899999999999999 8877 5678999999999999999 6655 77899999999999999954
No 133
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.24 E-value=1.7e-10 Score=117.22 Aligned_cols=188 Identities=11% Similarity=0.003 Sum_probs=119.6
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCC-ceEEEEecCCCCHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD-ERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~ 253 (967)
....++||++.++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHH
Confidence 3456999999999999999643 223489999999999999999987521 11221 233444443333332222
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhH-Hh-hhCC
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAI-AR-IMGS 331 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v-~~-~~~~ 331 (967)
.+ ..+..... ...+++.+||+||++.........+...+.....+.++|+||+.... .. ....
T Consensus 88 ~~-~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 88 KI-KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp HH-HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HH-HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 21 11111000 01246889999999876656666777777665667788888876531 11 1223
Q ss_pred cceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHH
Q 048084 332 IDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIAS 388 (967)
Q Consensus 332 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 388 (967)
...+.+.+++.++..+++.+.+...+... ..+....+++.++|.|..+..+..
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34899999999999999988764322211 124467888999999986554443
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=8.7e-12 Score=117.43 Aligned_cols=124 Identities=26% Similarity=0.297 Sum_probs=105.6
Q ss_pred ccEEEEEEEecCCC--CCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccc-c
Q 048084 539 KKILHLMLALDRGA--LIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKE-I 615 (967)
Q Consensus 539 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~-l 615 (967)
..++++.+.++.+. .++ ..+..+++|+.|++++|.+. .+ ..+..+++|++|+|+ + |.+.. +
T Consensus 17 ~~l~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~n~l~---~~--~~~~~l~~L~~L~Ls-----~--n~i~~~~ 80 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE----GLTDEFEELEFLSTINVGLT---SI--ANLPKLNKLKKLELS-----D--NRVSGGL 80 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC----SCCTTCTTCCEEECTTSCCC---CC--TTCCCCTTCCEEECC-----S--SCCCSCT
T ss_pred ccCeEEEccCCcCChhHHH----HHHhhcCCCcEEECcCCCCC---Cc--hhhhcCCCCCEEECC-----C--CcccchH
Confidence 57889999998887 555 56789999999999999843 32 558999999999999 6 56666 7
Q ss_pred ccccccCCCCcEEEccCCCCccccc--hHHhccCCCCEEecCCCCCCcccCc----cccccccccEEecCC
Q 048084 616 PTNIEKLLHLKYLNLFCQREIEKLP--ETLCELYNLERLNVSGCRNLRELPQ----GIGKLRKLMYLYNDR 680 (967)
Q Consensus 616 p~~i~~l~~L~~L~Ls~~~~i~~lp--~~~~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~l~~ 680 (967)
|..++++++|++|++++|. ++.+| ..+..+++|++|++++|. ++.+|. .+..+++|++|++++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 8778889999999999999 88876 779999999999999998 777775 688999999998863
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=1.1e-11 Score=148.00 Aligned_cols=111 Identities=27% Similarity=0.228 Sum_probs=55.5
Q ss_pred hhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccCc
Q 048084 586 PQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELPQ 665 (967)
Q Consensus 586 ~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 665 (967)
+..|..++.|++|+|+ + +.+..+|..++++++|++|+|++|. +..+|..+.+|++|++|+|++|. ++.+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls-----~--n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~ 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLS-----N--LQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPA 287 (727)
T ss_dssp -----CCCCCCEEECT-----T--SCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCS
T ss_pred hhhhccCCCCcEEECC-----C--CCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccCh
Confidence 4445555555555555 4 3344555555555555555555555 44555555555555555555555 445555
Q ss_pred cccccccccEEecCCCccccccccCCCCCCCCCcCCceEec
Q 048084 666 GIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVG 706 (967)
Q Consensus 666 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~ 706 (967)
.+++|++|++|+|++| .+..+|..|+.|++|+.|++..+.
T Consensus 288 ~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred hhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 5555555555555555 344555555555555555444443
No 136
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=2.1e-11 Score=133.56 Aligned_cols=133 Identities=26% Similarity=0.316 Sum_probs=66.7
Q ss_pred cEEEEEEEecCCCCCCCccccccc-CCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc-
Q 048084 540 KILHLMLALDRGALIPMPIWDNVK-GLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT- 617 (967)
Q Consensus 540 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~- 617 (967)
.++.|.+.++.+..++. ..+. ++++|+.|++++|. +..+.+..|.++++|++|+|+ + |.+..++.
T Consensus 40 ~l~~L~Ls~N~l~~l~~---~~~~~~l~~L~~L~L~~N~---i~~i~~~~~~~l~~L~~L~Ls-----~--N~l~~~~~~ 106 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHNH---LNFISSEAFVPVPNLRYLDLS-----S--NHLHTLDEF 106 (361)
T ss_dssp TCSEEECCSSCCCEECT---TSSSSCCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECC-----S--SCCCEECTT
T ss_pred CCCEEECCCCCCCccCh---hhhhhcccccCEEECCCCc---CCccChhhccCCCCCCEEECC-----C--CcCCcCCHH
Confidence 34555555555554442 2233 55555555555555 333344445555555555555 4 34444432
Q ss_pred ccccCCCCcEEEccCCCCcccc-chHHhccCCCCEEecCCCCCCcccCccc----cccccccEEecCCCccccccc
Q 048084 618 NIEKLLHLKYLNLFCQREIEKL-PETLCELYNLERLNVSGCRNLRELPQGI----GKLRKLMYLYNDRTESLRYLP 688 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~l----~~l~~L~~L~l~~~~~~~~~p 688 (967)
.+.++++|++|+|++|. +..+ |..+.++++|++|+|++|. ++.+|..+ ..+++|++|++++| .+..+|
T Consensus 107 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179 (361)
T ss_dssp TTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred HhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence 34555555555555555 4444 3345555555555555555 55555443 34555555555555 333333
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=4.6e-11 Score=129.16 Aligned_cols=100 Identities=15% Similarity=0.207 Sum_probs=61.2
Q ss_pred ccccceeEecCccCCCCCCC--CCCCCCccceeeccccCceEeCccccCCCCCCCCcccccccccc-ccccccccccccc
Q 048084 816 LTNLRDLSLIMWRNREHLPP--LGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAFPKLK-LLRFDNMKELEEL 892 (967)
Q Consensus 816 l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~L~~l 892 (967)
+++|+.|+|++|.. +.+|. +.++++|+.|+|.+. ++.++... +.++++|+ .+.+.+ +++.+
T Consensus 225 ~~~L~~l~L~~n~i-~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a-----------F~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKTNA-TTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV-----------FSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp CTTCCEEECTTBCC-CEECTTTTTTCTTCCEEECCTT--CCEECTTT-----------TTTCTTCCEEEEECT--TCCEE
T ss_pred cCCCeEEECCCCCc-ceecHhhhhCCCCCCEEECCcc--cceehHHH-----------hhCChhccEEEEEcc--cceEE
Confidence 56666666666633 33333 666667777766652 55554332 23566666 666655 34433
Q ss_pred ccccccccccccCcccceeeeccCccCcCCCc-CCCCCCCcCeEEE
Q 048084 893 DFRTAIKGEIIIMPRLSSLQILRCLKLKALPD-HLLQKTTLQELWI 937 (967)
Q Consensus 893 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l 937 (967)
. +..|..+++|+.|++.++ .++.++. .|.++++|+.|+.
T Consensus 289 ~-----~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 289 E-----FGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp C-----TTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred c-----hhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 2 235667888888888777 6766664 6778888888763
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.18 E-value=2.7e-11 Score=132.70 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=112.8
Q ss_pred EEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhc-cCCcceEEEecccCcccccccccccc-cccc
Q 048084 543 HLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFD-KLICLRALKLEVRGWRSCENYIKEIP-TNIE 620 (967)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~ 620 (967)
.+...++.+..+|..+ .+.++.|+|++|. +..+.+..|. ++++|++|+|+ + |.+..++ ..+.
T Consensus 22 ~l~c~~~~l~~iP~~~------~~~l~~L~Ls~N~---l~~l~~~~~~~~l~~L~~L~L~-----~--N~i~~i~~~~~~ 85 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL------PSYTALLDLSHNN---LSRLRAEWTPTRLTNLHSLLLS-----H--NHLNFISSEAFV 85 (361)
T ss_dssp EEECCSSCCSSCCSSC------CTTCSEEECCSSC---CCEECTTSSSSCCTTCCEEECC-----S--SCCCEECTTTTT
T ss_pred EEEeCCCCcCccCccC------CCCCCEEECCCCC---CCccChhhhhhcccccCEEECC-----C--CcCCccChhhcc
Confidence 4566667777777432 3468999999998 4555666677 99999999999 7 6777776 5689
Q ss_pred cCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCccc-CccccccccccEEecCCCccccccccCC----CCC
Q 048084 621 KLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLREL-PQGIGKLRKLMYLYNDRTESLRYLPVGI----EEL 694 (967)
Q Consensus 621 ~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~----~~l 694 (967)
++++|++|+|++|. +..+|. .+.++++|++|+|++|. +..+ |..+.++++|++|++++| .+..+|..+ ..+
T Consensus 86 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 86 PVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKL 162 (361)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----C
T ss_pred CCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccC
Confidence 99999999999999 888875 58899999999999999 5555 677999999999999999 677777653 456
Q ss_pred CCCCcCCceEec
Q 048084 695 IRLRGVTKFVVG 706 (967)
Q Consensus 695 ~~L~~L~~~~~~ 706 (967)
++|+.|++..+.
T Consensus 163 ~~L~~L~L~~N~ 174 (361)
T 2xot_A 163 PKLMLLDLSSNK 174 (361)
T ss_dssp TTCCEEECCSSC
T ss_pred CcCCEEECCCCC
Confidence 666666655443
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=6.1e-12 Score=150.35 Aligned_cols=119 Identities=21% Similarity=0.234 Sum_probs=99.7
Q ss_pred ccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCcccc
Q 048084 560 DNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKL 639 (967)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~l 639 (967)
..+..+++|+.|+|++|.+ .. +|..+.++++|++|+|+ + |.+..+|..+++|++|++|+|++|. ++.+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l---~~-l~~~~~~l~~L~~L~Ls-----~--N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l 285 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQI---FN-ISANIFKYDFLTRLYLN-----G--NSLTELPAEIKNLSNLRVLDLSHNR-LTSL 285 (727)
T ss_dssp ----CCCCCCEEECTTSCC---SC-CCGGGGGCCSCSCCBCT-----T--SCCSCCCGGGGGGTTCCEEECTTSC-CSSC
T ss_pred hhhccCCCCcEEECCCCCC---CC-CChhhcCCCCCCEEEee-----C--CcCcccChhhhCCCCCCEEeCcCCc-CCcc
Confidence 5678899999999999984 33 44446689999999999 7 6788899999999999999999999 8899
Q ss_pred chHHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCccccccccCC
Q 048084 640 PETLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTESLRYLPVGI 691 (967)
Q Consensus 640 p~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~ 691 (967)
|..+++|++|++|+|++|. ++.+|..|+.|++|++|+|++|.....+|..+
T Consensus 286 p~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred ChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 9999999999999999998 88999999999999999999995444455444
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=4.1e-11 Score=116.28 Aligned_cols=125 Identities=19% Similarity=0.148 Sum_probs=106.7
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCC-CccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLR-GLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~ 617 (967)
..++.+.+.++.+..++ . +..+. +|+.|++++|.+. .+ ..|..+++|++|+|+ + |.+..+|.
T Consensus 19 ~~L~~L~l~~n~l~~i~----~-~~~~~~~L~~L~Ls~N~l~---~~--~~l~~l~~L~~L~Ls-----~--N~l~~~~~ 81 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIE----N-LGATLDQFDAIDFSDNEIR---KL--DGFPLLRRLKTLLVN-----N--NRICRIGE 81 (176)
T ss_dssp TSCEEEECTTSCCCSCC----C-GGGGTTCCSEEECCSSCCC---EE--CCCCCCSSCCEEECC-----S--SCCCEECS
T ss_pred CCceEEEeeCCCCchhH----H-hhhcCCCCCEEECCCCCCC---cc--cccccCCCCCEEECC-----C--CcccccCc
Confidence 57899999999888765 2 34444 9999999999854 32 358999999999999 7 67888876
Q ss_pred cc-ccCCCCcEEEccCCCCccccch--HHhccCCCCEEecCCCCCCcccCcc----ccccccccEEecCCCc
Q 048084 618 NI-EKLLHLKYLNLFCQREIEKLPE--TLCELYNLERLNVSGCRNLRELPQG----IGKLRKLMYLYNDRTE 682 (967)
Q Consensus 618 ~i-~~l~~L~~L~Ls~~~~i~~lp~--~~~~l~~L~~L~L~~~~~l~~lp~~----l~~l~~L~~L~l~~~~ 682 (967)
.+ +.+++|++|+|++|. +..+|. .+..+++|++|++++|. +..+|.. +..+++|+.|++++|.
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 65 899999999999999 899997 78999999999999999 7888875 8999999999999884
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.1e-10 Score=134.78 Aligned_cols=108 Identities=21% Similarity=0.265 Sum_probs=78.8
Q ss_pred CccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhcc
Q 048084 567 GLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCEL 646 (967)
Q Consensus 567 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l 646 (967)
.|+.|++++|.+ .. +|. |..+++|++|+|+ + |.+..+|..++++++|++|+|++|. ++.+| .++++
T Consensus 442 ~L~~L~Ls~n~l---~~-lp~-~~~l~~L~~L~Ls-----~--N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDL---TV-LCH-LEQLLLVTHLDLS-----H--NRLRALPPALAALRCLEVLQASDNA-LENVD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCC---SS-CCC-GGGGTTCCEEECC-----S--SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTC
T ss_pred CceEEEecCCCC---CC-CcC-ccccccCcEeecC-----c--ccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCC
Confidence 367777777763 33 344 7777888888887 6 5667777778888888888888887 77777 57788
Q ss_pred CCCCEEecCCCCCCccc--CccccccccccEEecCCCccccccccC
Q 048084 647 YNLERLNVSGCRNLREL--PQGIGKLRKLMYLYNDRTESLRYLPVG 690 (967)
Q Consensus 647 ~~L~~L~L~~~~~l~~l--p~~l~~l~~L~~L~l~~~~~~~~~p~~ 690 (967)
++|++|+|++|. ++.+ |..++.+++|+.|++++| .+..+|..
T Consensus 508 ~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~ 551 (567)
T 1dce_A 508 PRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGI 551 (567)
T ss_dssp SSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSC
T ss_pred CCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccH
Confidence 888888888877 6655 777888888888888877 45555443
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=1.3e-10 Score=114.44 Aligned_cols=124 Identities=24% Similarity=0.240 Sum_probs=92.1
Q ss_pred EEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchh-hhccCCcceEEEecccCccccccccccc-ccccc
Q 048084 543 HLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQ-LFDKLICLRALKLEVRGWRSCENYIKEI-PTNIE 620 (967)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~ 620 (967)
.+.+.++.+..+|..+ .++|+.|++++|. +..+.+. .|..+++|++|+|+ + |.+..+ |..++
T Consensus 12 ~l~~s~~~l~~ip~~~------~~~l~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~Ls-----~--N~l~~~~~~~~~ 75 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDI------PLHTTELLLNDNE---LGRISSDGLFGRLPHLVKLELK-----R--NQLTGIEPNAFE 75 (192)
T ss_dssp EEECTTSCCSSCCSCC------CTTCSEEECCSCC---CCSBCCSCSGGGCTTCCEEECC-----S--SCCCCBCTTTTT
T ss_pred EEEcCCCCcCcCccCC------CCCCCEEECCCCc---CCccCCccccccCCCCCEEECC-----C--CCCCCcCHhHcC
Confidence 4566667777776422 2388888998887 3333443 47888899999998 6 566666 67788
Q ss_pred cCCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccCccccccccccEEecCCCcc
Q 048084 621 KLLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTES 683 (967)
Q Consensus 621 ~l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 683 (967)
++++|++|+|++|. +..++. .+.++++|++|+|++|......|..+..+++|++|++++|+.
T Consensus 76 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 76 GASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 88899999999888 777664 477888899999998884344577788888899999988843
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.10 E-value=3e-10 Score=111.72 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=90.1
Q ss_pred EEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-ccccc
Q 048084 543 HLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEK 621 (967)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~ 621 (967)
.+.+.++.+..+|..+ .++|++|++++|.+ .. +|..|.++++|++|+|+ + |.+..++ ..|.+
T Consensus 14 ~l~~~~~~l~~ip~~~------~~~l~~L~L~~n~i---~~-ip~~~~~l~~L~~L~Ls-----~--N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI------PRDVTELYLDGNQF---TL-VPKELSNYKHLTLIDLS-----N--NRISTLSNQSFSN 76 (193)
T ss_dssp EEECTTSCCSSCCSCC------CTTCCEEECCSSCC---CS-CCGGGGGCTTCCEEECC-----S--SCCCCCCTTTTTT
T ss_pred EEEcCCCCCCcCCCCC------CCCCCEEECCCCcC---ch-hHHHhhcccCCCEEECC-----C--CcCCEeCHhHccC
Confidence 3455566666666322 25788888888874 33 45678888888888888 6 6676665 45788
Q ss_pred CCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCcccCcc-ccccccccEEecCCCc
Q 048084 622 LLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRTE 682 (967)
Q Consensus 622 l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 682 (967)
+++|++|+|++|. +..+|. .+.++++|++|+|++|. ++.+|.. +..+++|++|++++|+
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 8888888888888 777764 57888888888888888 7777654 7778888888888874
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=5.9e-10 Score=108.27 Aligned_cols=123 Identities=24% Similarity=0.362 Sum_probs=96.3
Q ss_pred EEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc-ccc
Q 048084 543 HLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN-IEK 621 (967)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~-i~~ 621 (967)
.+.+..+.+..+|.. -.++|++|++++|. +..+.+..|..+++|++|+|+ + |.+..+|.. +++
T Consensus 11 ~l~~~~~~l~~~p~~------~~~~l~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~-----~--n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTG------IPSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLS-----Q--NQIQSLPDGVFDK 74 (177)
T ss_dssp EEECCSSCCSSCCTT------CCTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-----S--SCCCCCCTTTTTT
T ss_pred EEEecCCCCccCCCC------CCCCCcEEEeCCCc---ccEeCHHHhcCcccccEEECC-----C--CcceEeChhHccC
Confidence 455566666666632 23689999999998 445566678899999999998 6 667777654 688
Q ss_pred CCCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCcc-ccccccccEEecCCCcc
Q 048084 622 LLHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRTES 683 (967)
Q Consensus 622 l~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~ 683 (967)
+++|++|+|++|. ++.+|.. +..+++|++|++++|. ++.+|.. +..+++|++|++++|+.
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 9999999999998 8888764 6789999999999998 7777765 57799999999999843
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.04 E-value=3.4e-10 Score=111.46 Aligned_cols=125 Identities=16% Similarity=0.201 Sum_probs=98.6
Q ss_pred cEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc--cccCCCCcEEEccCCCCcccc-chHHhc
Q 048084 569 RSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN--IEKLLHLKYLNLFCQREIEKL-PETLCE 645 (967)
Q Consensus 569 r~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~--i~~l~~L~~L~Ls~~~~i~~l-p~~~~~ 645 (967)
++++++++.+ .. +|..+. ..|++|+|+ + |.+..++.. ++.+++|++|+|++|. ++.+ |..+.+
T Consensus 11 ~~l~~s~~~l---~~-ip~~~~--~~l~~L~l~-----~--n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGL---KE-IPRDIP--LHTTELLLN-----D--NELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCC---SS-CCSCCC--TTCSEEECC-----S--CCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT
T ss_pred CEEEcCCCCc---Cc-CccCCC--CCCCEEECC-----C--CcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC
Confidence 7889999874 33 333232 389999999 6 677778753 8899999999999999 8777 678999
Q ss_pred cCCCCEEecCCCCCCcccC-ccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCc
Q 048084 646 LYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGG 708 (967)
Q Consensus 646 l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~ 708 (967)
+++|++|+|++|. ++.+| ..+.++++|++|++++|......|..+..+++|+.|++..+...
T Consensus 77 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 77 ASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999999999999 66555 45889999999999999544455777888888888877665543
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=4.3e-10 Score=110.57 Aligned_cols=123 Identities=22% Similarity=0.296 Sum_probs=98.7
Q ss_pred cEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccch-HHhccC
Q 048084 569 RSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPE-TLCELY 647 (967)
Q Consensus 569 r~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l~ 647 (967)
++++++++.+ .. +|..+ .+.|++|+|+ + |.+..+|..+.++++|++|+|++|. ++.++. .|.+++
T Consensus 13 ~~l~~~~~~l---~~-ip~~~--~~~l~~L~L~-----~--n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKGL---KV-LPKGI--PRDVTELYLD-----G--NQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSCC---SS-CCSCC--CTTCCEEECC-----S--SCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CEEEcCCCCC---Cc-CCCCC--CCCCCEEECC-----C--CcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCC
Confidence 5788888874 33 33322 3589999999 7 7788899999999999999999999 888774 689999
Q ss_pred CCCEEecCCCCCCcccC-ccccccccccEEecCCCccccccccC-CCCCCCCCcCCceEecC
Q 048084 648 NLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRYLPVG-IEELIRLRGVTKFVVGG 707 (967)
Q Consensus 648 ~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~ 707 (967)
+|++|+|++|. ++.+| ..+..+++|++|++++| .+..+|.. +..+++|+.|++..+..
T Consensus 79 ~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 79 QLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 99999999999 66665 46899999999999999 66677764 77788888777665543
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=1.7e-09 Score=116.75 Aligned_cols=187 Identities=14% Similarity=0.114 Sum_probs=117.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccC-CceEEEEecCCCCHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF-DERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 254 (967)
-.+++||+..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+ ..+++++.+....... .++
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~ 91 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRN 91 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHT
T ss_pred HHHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHH
Confidence 356999999999999998642 223389999999999999999987521 1111 1234444433222222 222
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh-HHh-hhCC
Q 048084 255 IIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA-IAR-IMGS 331 (967)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~-v~~-~~~~ 331 (967)
++..+..... .+ .+++.++|+||++......+..+...+.....++.+|+||+... +.. ....
T Consensus 92 ~~~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 92 QIKHFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 2222210000 01 34588999999987665566667777765556778888887642 111 1223
Q ss_pred cceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhH-HHHHHH
Q 048084 332 IDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLA-AKTIAS 388 (967)
Q Consensus 332 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-i~~~~~ 388 (967)
...+.+.+++.++..+++...+...+... ..+.+..|++.++|.|.. +..+..
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKY----TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45899999999999999988764322111 124467899999999954 444443
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.01 E-value=1.6e-09 Score=116.82 Aligned_cols=184 Identities=16% Similarity=0.071 Sum_probs=112.7
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
.-.+|+|++..++.+...+..... .......+.|+|++|+|||++|+.+++. ... ..+++.++......++.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~-- 81 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLA-- 81 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHH--
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHH--
Confidence 345799999999998888753210 0113357899999999999999999874 211 23445443322222211
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC------------------CCcEE
Q 048084 255 IIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL------------------HGSKI 316 (967)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~i 316 (967)
..+... ..++.+|++|+++.........+...+.... ....+
T Consensus 82 -------------------~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 82 -------------------AILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp -------------------HHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred -------------------HHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 111110 1346799999998765444555555443221 23456
Q ss_pred EEecCChh-HHhhh-CC-cceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 317 LITTRKEA-IARIM-GS-IDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 317 liTtr~~~-v~~~~-~~-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
|.||.... +...+ .. ...+.+++++.++..+++...+....... ..+....+++.++|.|..+..+...+
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI----TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66665432 11111 11 24789999999999999988765433211 13457789999999999887776554
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=6.6e-12 Score=124.66 Aligned_cols=109 Identities=22% Similarity=0.229 Sum_probs=84.3
Q ss_pred ccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCcccc
Q 048084 560 DNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKL 639 (967)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~l 639 (967)
..+..+++|++|++++|.+ .. +| .+..+++|++|+|+ + |.+..+|..++.+++|++|+|++|. +..+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l---~~-l~-~~~~l~~L~~L~l~-----~--n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l 108 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNI---EK-IS-SLSGMENLRILSLG-----R--NLIKKIENLDAVADTLEELWISYNQ-IASL 108 (198)
T ss_dssp HHHHHTTTCSEEECSEEEE---SC-CC-CHHHHTTCCEEEEE-----E--EEECSCSSHHHHHHHCSEEEEEEEE-CCCH
T ss_pred HHHhcCCCCCEEECCCCCC---cc-cc-ccccCCCCCEEECC-----C--CCcccccchhhcCCcCCEEECcCCc-CCcC
Confidence 4667788888888888873 33 34 57888888888888 6 5677788777777888888888887 7887
Q ss_pred chHHhccCCCCEEecCCCCCCcccCc--cccccccccEEecCCCcc
Q 048084 640 PETLCELYNLERLNVSGCRNLRELPQ--GIGKLRKLMYLYNDRTES 683 (967)
Q Consensus 640 p~~~~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~l~~~~~ 683 (967)
| .+..+++|++|++++|. ++.+|. .+..+++|++|++++|+.
T Consensus 109 ~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp H-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred C-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 7 47888888888888887 666654 577888888888888843
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1.1e-10 Score=126.02 Aligned_cols=286 Identities=10% Similarity=0.040 Sum_probs=172.6
Q ss_pred CCCCccEEEeccCCccchhccchhhhcc-CCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccc-h
Q 048084 564 GLRGLRSLLVESNEYSWSRVILPQLFDK-LICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLP-E 641 (967)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp-~ 641 (967)
.+.+++.|.++++-. ... + ..+.. +++|++|||+ + +.+......-+.++.++++.+..+. +| .
T Consensus 23 ~~~~l~~L~l~g~i~--~~~-~-~~l~~~l~~L~~LdLs-----~--n~i~~~~~~~~~~~~~~~~~~~~~~----I~~~ 87 (329)
T 3sb4_A 23 EANSITHLTLTGKLN--AED-F-RHLRDEFPSLKVLDIS-----N--AEIKMYSGKAGTYPNGKFYIYMANF----VPAY 87 (329)
T ss_dssp HHHHCSEEEEEEEEC--HHH-H-HHHHHSCTTCCEEEEE-----E--EEECCEEESSSSSGGGCCEEECTTE----ECTT
T ss_pred hhCceeEEEEecccc--HHH-H-HHHHHhhccCeEEecC-----c--ceeEEecCccccccccccccccccc----cCHH
Confidence 367889999987631 111 1 22344 8899999999 6 5555221112233335666666653 44 3
Q ss_pred HHhc--------cCCCCEEecCCCCCCcccCc-cccccccccEEecCCCccccccc-cCCCCCCCCCcCCceEec----C
Q 048084 642 TLCE--------LYNLERLNVSGCRNLRELPQ-GIGKLRKLMYLYNDRTESLRYLP-VGIEELIRLRGVTKFVVG----G 707 (967)
Q Consensus 642 ~~~~--------l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~~~~~~----~ 707 (967)
.|.+ |++|+.|+|.. . ++.++. .|.+|++|+.|++..| .+..++ ..|..+.++..+...... .
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcc
Confidence 4667 99999999998 5 777775 4889999999999998 444444 346555544444322210 0
Q ss_pred cCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhC
Q 048084 708 GYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEAL 787 (967)
Q Consensus 708 ~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 787 (967)
.......+..+..|+. .+.+.. ...........-....++..+.+.++- . ......+ .
T Consensus 165 ~~i~~~~f~~~~~L~~--~i~~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~l----~----------~~~~~~l---~ 222 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLET--TIQVGA---MGKLEDEIMKAGLQPRDINFLTIEGKL----D----------NADFKLI---R 222 (329)
T ss_dssp TTTTTSCEEESCCCEE--EEEECT---TCCHHHHHHHTTCCGGGCSEEEEEECC----C----------HHHHHHH---H
T ss_pred ccccccccccccccce--eEEecC---CCcHHHHHhhcccCccccceEEEeeee----c----------HHHHHHH---H
Confidence 0001112222222210 122222 122222222223345677777777651 0 0011111 1
Q ss_pred CCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC--CCCCCCcc-ceeeccccCceEeCccccCCC
Q 048084 788 GPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP--LGKLPSLE-DLKIQGMQSVKRVGNEFLGVE 864 (967)
Q Consensus 788 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~-~L~L~~c~~l~~~~~~~~~~~ 864 (967)
..+++|++|+|.+|.+.. ++...|.++++|+.|+|.+| +..++. +.++++|+ .|++.+ .++.++...
T Consensus 223 ~~~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a---- 292 (329)
T 3sb4_A 223 DYMPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA---- 292 (329)
T ss_dssp HHCTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT----
T ss_pred HhcCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh----
Confidence 236899999999988877 77788999999999999987 444444 88999999 999986 566665433
Q ss_pred CCCCCcccccccccccccccccccccccccccccccccccCcccceee
Q 048084 865 SDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQ 912 (967)
Q Consensus 865 ~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~ 912 (967)
+.++++|+.|++.+. +++.+. +..|..+++|+.|.
T Consensus 293 -------F~~c~~L~~l~l~~n-~i~~I~-----~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 293 -------FMGCDNLRYVLATGD-KITTLG-----DELFGNGVPSKLIY 327 (329)
T ss_dssp -------TTTCTTEEEEEECSS-CCCEEC-----TTTTCTTCCCCEEE
T ss_pred -------hhCCccCCEEEeCCC-ccCccc-----hhhhcCCcchhhhc
Confidence 347888999988654 455443 23566788888775
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.99 E-value=7.8e-09 Score=113.91 Aligned_cols=140 Identities=10% Similarity=0.190 Sum_probs=84.7
Q ss_pred CCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCC----CCCCC--CCCCCCccceeeccccCceEeCccccCCC
Q 048084 791 SNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNR----EHLPP--LGKLPSLEDLKIQGMQSVKRVGNEFLGVE 864 (967)
Q Consensus 791 ~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~----~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~~ 864 (967)
.+|+.+.|. +.... ++...|.+|++|+.+++.++... ..++. +.+|++|+.++|.+ .++.++...
T Consensus 248 ~~L~~i~lp-~~i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a---- 318 (401)
T 4fdw_A 248 SGITTVKLP-NGVTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL---- 318 (401)
T ss_dssp CCCSEEEEE-TTCCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT----
T ss_pred CCccEEEeC-CCccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh----
Confidence 456666663 22333 43566677777777777766332 12222 77788888888763 466655433
Q ss_pred CCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCC-cCCCCCC-CcCeEEEcCCcc
Q 048084 865 SDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALP-DHLLQKT-TLQELWISGCPI 942 (967)
Q Consensus 865 ~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~-~L~~L~l~~c~~ 942 (967)
+.++++|+.+.|.+ +++.+. ...+..+ +|+.|.+.+| .+..++ ..+..++ +++.|.+..+..
T Consensus 319 -------F~~c~~L~~l~lp~--~l~~I~-----~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 319 -------LGGNRKVTQLTIPA--NVTQIN-----FSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -------TTTCCSCCEEEECT--TCCEEC-----TTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -------hcCCCCccEEEECc--cccEEc-----HHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHH
Confidence 23677788887754 344443 2355677 9999999988 445444 4566664 789999977642
Q ss_pred hhhhhcCCCCCCCcccC
Q 048084 943 LKERCRKETGEDWPNIR 959 (967)
Q Consensus 943 l~~~~~~~~~~~~~~i~ 959 (967)
+.++ ....|...+
T Consensus 383 --~~y~--~a~~W~~f~ 395 (401)
T 4fdw_A 383 --EKYK--NANGWRDFT 395 (401)
T ss_dssp --HHHH--HSTTGGGGG
T ss_pred --HHhh--hccchhhhh
Confidence 3333 234587654
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=3.5e-12 Score=126.65 Aligned_cols=110 Identities=23% Similarity=0.242 Sum_probs=85.8
Q ss_pred chhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccccchHHhccCCCCEEecCCCCCCcccC
Q 048084 585 LPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCRNLRELP 664 (967)
Q Consensus 585 ~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~~l~~lp 664 (967)
+|..|..+++|++|+|+ + |.+..+| .++++++|++|++++|. +..+|..+..+++|++|++++|. ++.+|
T Consensus 40 l~~~~~~l~~L~~L~ls-----~--n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALS-----T--NNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp CHHHHHHTTTCSEEECS-----E--EEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred hhHHHhcCCCCCEEECC-----C--CCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 44578889999999998 6 6677787 78889999999999998 88888878888899999999987 77776
Q ss_pred ccccccccccEEecCCCcccccccc--CCCCCCCCCcCCceEec
Q 048084 665 QGIGKLRKLMYLYNDRTESLRYLPV--GIEELIRLRGVTKFVVG 706 (967)
Q Consensus 665 ~~l~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~~~~~~ 706 (967)
.+..+++|++|++++| .+..++. .+..+++|+.|++..+.
T Consensus 110 -~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred -ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 6888899999999888 4554443 45566666666555443
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.87 E-value=3.3e-09 Score=102.18 Aligned_cols=80 Identities=23% Similarity=0.436 Sum_probs=45.2
Q ss_pred CcceEEEecccCccccccccccc-ccccccCCCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCcc-ccc
Q 048084 593 ICLRALKLEVRGWRSCENYIKEI-PTNIEKLLHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQG-IGK 669 (967)
Q Consensus 593 ~~L~~L~L~~~~~~~c~~~~~~l-p~~i~~l~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-l~~ 669 (967)
++|++|+|+ + |.+..+ |..++++++|++|+|++|. ++.+|.. +.++++|++|+|++|. ++.+|.. +..
T Consensus 33 ~~L~~L~Ls-----~--N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 103 (174)
T 2r9u_A 33 TDKQRLWLN-----N--NQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDN 103 (174)
T ss_dssp TTCSEEECC-----S--SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEeC-----C--CCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhcc
Confidence 455666665 4 444444 3445556666666666665 5555543 3556666666666655 5555543 555
Q ss_pred cccccEEecCCC
Q 048084 670 LRKLMYLYNDRT 681 (967)
Q Consensus 670 l~~L~~L~l~~~ 681 (967)
+++|++|++++|
T Consensus 104 l~~L~~L~L~~N 115 (174)
T 2r9u_A 104 LKSLTHIYLYNN 115 (174)
T ss_dssp CTTCSEEECCSS
T ss_pred ccCCCEEEeCCC
Confidence 666666666665
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=3.2e-09 Score=102.24 Aligned_cols=108 Identities=23% Similarity=0.293 Sum_probs=80.6
Q ss_pred EEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc-ccc
Q 048084 543 HLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN-IEK 621 (967)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~-i~~ 621 (967)
.+.+.++.+..+|.. + .++|+.|++++|. +..+.|..|.++++|++|+|+ + |.+..+|.. +.+
T Consensus 16 ~l~~~~n~l~~iP~~----~--~~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls-----~--N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 16 LVNCQNIRLASVPAG----I--PTDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFN-----S--NKLTAIPTGVFDK 79 (174)
T ss_dssp EEECCSSCCSSCCSC----C--CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-----S--SCCCCCCTTTTTT
T ss_pred EEEeCCCCCCccCCC----c--CCCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECC-----C--CCCCccChhHhCC
Confidence 466677777777742 2 2788888888887 445567778888888888888 6 667777765 478
Q ss_pred CCCCcEEEccCCCCccccchH-HhccCCCCEEecCCCCCCcccCcccc
Q 048084 622 LLHLKYLNLFCQREIEKLPET-LCELYNLERLNVSGCRNLRELPQGIG 668 (967)
Q Consensus 622 l~~L~~L~Ls~~~~i~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~l~ 668 (967)
+++|++|+|++|. +..+|.. +..+++|++|+|++|. +...|..+.
T Consensus 80 l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~ 125 (174)
T 2r9u_A 80 LTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIM 125 (174)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGH
T ss_pred cchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC-cccccccHH
Confidence 8888888888888 8888764 7788888888888887 555554443
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.86 E-value=5.5e-09 Score=101.31 Aligned_cols=124 Identities=27% Similarity=0.357 Sum_probs=96.9
Q ss_pred ccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccccc-ccccCCCCcEEEccCCCCccccchH-Hhc
Q 048084 568 LRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPT-NIEKLLHLKYLNLFCQREIEKLPET-LCE 645 (967)
Q Consensus 568 Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~-~i~~l~~L~~L~Ls~~~~i~~lp~~-~~~ 645 (967)
.+.++++++.. .. +|. .-.++|++|+++ + +.+..+|. .++++++|++|++++|. ++.+|.. +..
T Consensus 9 ~~~l~~~~~~l---~~-~p~--~~~~~l~~L~l~-----~--n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKGL---TS-VPT--GIPSSATRLELE-----S--NKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSCC---SS-CCT--TCCTTCSEEECC-----S--SCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEecCCCC---cc-CCC--CCCCCCcEEEeC-----C--CcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccC
Confidence 46788888873 33 232 234689999999 6 66777765 46889999999999998 8888864 689
Q ss_pred cCCCCEEecCCCCCCcccCcc-ccccccccEEecCCCccccccccC-CCCCCCCCcCCceEecC
Q 048084 646 LYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRTESLRYLPVG-IEELIRLRGVTKFVVGG 707 (967)
Q Consensus 646 l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~ 707 (967)
+++|++|++++|. ++.+|.. +..+++|++|++++| .+..+|.. +..+++|+.|++..+..
T Consensus 75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 9999999999998 7777655 688999999999999 66677765 47788888877765543
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=1.3e-08 Score=109.80 Aligned_cols=189 Identities=12% Similarity=0.039 Sum_probs=117.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccC-CceEEEEecCCCCHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF-DERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 254 (967)
-.+++|+++.++.+..++... ..+.+.|+|++|+|||++|+.+++... ...+ ...+.+..+...... ..+.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~ 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGIN-VIRE 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHH-TTHH
T ss_pred HHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchH-HHHH
Confidence 356999999999999988643 233489999999999999999987521 1111 123334333211111 1111
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhH-Hhh-hCCc
Q 048084 255 IIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAI-ARI-MGSI 332 (967)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v-~~~-~~~~ 332 (967)
.+..+.... ....+++.++|+|+++......+..+...+.....++++|+||..... ... ....
T Consensus 96 ~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 96 KVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 111110000 001256789999999877666677777777665667788888876431 111 1123
Q ss_pred ceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH
Q 048084 333 DIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL 390 (967)
Q Consensus 333 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (967)
..+.+.+++.++..+++...+...+... ..+....|++.++|.|..+..+...+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEE----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4789999999999999988765433211 13446788899999998665554443
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=1e-08 Score=98.40 Aligned_cols=99 Identities=20% Similarity=0.330 Sum_probs=58.2
Q ss_pred ccEEEeccCCccchhccchhhhccCCcceEEEecccCccccccccccc-ccccccCCCCcEEEccCCCCccccchH-Hhc
Q 048084 568 LRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEI-PTNIEKLLHLKYLNLFCQREIEKLPET-LCE 645 (967)
Q Consensus 568 Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~l-p~~i~~l~~L~~L~Ls~~~~i~~lp~~-~~~ 645 (967)
.+++++++|.+ .. +|..+ .+.|++|+|+ + |.+..+ |..+.++++|++|+|++|. ++.+|.. +.+
T Consensus 11 ~~~l~~s~n~l---~~-ip~~~--~~~l~~L~L~-----~--N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSL---AS-VPTGI--PTTTQVLYLY-----D--NQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSCC---SS-CCSCC--CTTCSEEECC-----S--SCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT
T ss_pred CCEEEeCCCCc---Cc-cCccC--CCCCcEEEcC-----C--CcCCccChhhhcCcccCCEEECCCCC-cCccChhhccC
Confidence 35566666652 22 22212 2566666666 4 455555 4456666666677776666 6666543 456
Q ss_pred cCCCCEEecCCCCCCcccCcc-ccccccccEEecCCC
Q 048084 646 LYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRT 681 (967)
Q Consensus 646 l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~ 681 (967)
+++|++|+|++|. ++.+|.. +..+++|++|++++|
T Consensus 77 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 77 LTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 6667777776666 5555543 666666777777666
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.79 E-value=7.3e-08 Score=100.70 Aligned_cols=171 Identities=9% Similarity=-0.012 Sum_probs=105.7
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc---cC--CceEEEEecCCCCHHHHHH
Q 048084 179 IFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK---YF--DERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 179 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~f--~~~~wv~~~~~~~~~~~~~ 253 (967)
+.||++++++|...|...-. .+....+.|+|++|+|||++|+.++++..... .. -.+++|++....+...++.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 78999999999988865321 34667899999999999999999998632111 11 1356777777788889999
Q ss_pred HHHHHhccCCCCCC-ChHHHHHHHHHH--hccCcceEeecCCCCCChhhHHHHHhhhc--CCCC-CcEEEEecCChh---
Q 048084 254 AIIEALTDSASNFG-EFQSLMQRIQKH--VARKKLLLVLDDVWNENFYKWEQFNNCLK--NCLH-GSKILITTRKEA--- 324 (967)
Q Consensus 254 ~i~~~l~~~~~~~~-~~~~~~~~l~~~--l~~~r~LlvlDdv~~~~~~~~~~l~~~l~--~~~~-gs~iliTtr~~~--- 324 (967)
.|++++........ ..+.+...+... -.+++++++||+++... .-+.+..++. .... ...||.++...+
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 99999965432222 222333333321 14567899999997653 1133444332 1111 122333343321
Q ss_pred --HH----hhhCCcceeecCCCChhhHHHHHHHHhc
Q 048084 325 --IA----RIMGSIDIISINVLSEIECWSVFELLAF 354 (967)
Q Consensus 325 --v~----~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 354 (967)
+. ..++ ...+.+++.+.++-.+++.+++.
T Consensus 178 ~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 178 EQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 1111 24789999999999999988764
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.78 E-value=6.5e-08 Score=107.21 Aligned_cols=307 Identities=14% Similarity=0.057 Sum_probs=168.7
Q ss_pred ccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-cccccCCCCcEEEccCCCCccc
Q 048084 560 DNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEKLLHLKYLNLFCQREIEK 638 (967)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~l~~L~~L~Ls~~~~i~~ 638 (967)
.+|.+|++|+++.+..+ +..+....|.+|.+|+.++|. +.+..++ ..+.++..|+.+.+..+ +..
T Consensus 65 ~AF~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp--------~~l~~I~~~aF~~c~~L~~i~~p~~--l~~ 130 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIP--------DSVKMIGRCTFSGCYALKSILLPLM--LKS 130 (394)
T ss_dssp TTTTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCC--------TTCCEECTTTTTTCTTCCCCCCCTT--CCE
T ss_pred HHhhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeC--------CCceEccchhhcccccchhhcccCc--eee
Confidence 56888999999988654 444566778999999999986 3355554 45667888887776544 444
Q ss_pred cch-HHhccCCCCEEecCCCCCCccc-CccccccccccEEecCCCccccccc-cCCCCCCCCCcCCceEecCcCCCccCc
Q 048084 639 LPE-TLCELYNLERLNVSGCRNLREL-PQGIGKLRKLMYLYNDRTESLRYLP-VGIEELIRLRGVTKFVVGGGYDRACSL 715 (967)
Q Consensus 639 lp~-~~~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~~~~l 715 (967)
++. .+.++..+........ ..+ ...|.++++|+.+.+..+ +..++ ..+..+.+|+.+.+... ........+
T Consensus 131 i~~~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F 204 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCF 204 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTT
T ss_pred ecceeeecccccccccCccc---cccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhh
Confidence 442 3444443333332222 222 234667777777777654 23333 33556666666554221 111112233
Q ss_pred cccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCe
Q 048084 716 GSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKE 795 (967)
Q Consensus 716 ~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 795 (967)
..+..|..+. +.. .. ...........+|+.+.+..... ......+..+..|+.
T Consensus 205 ~~~~~L~~i~---~~~---~~---~~i~~~~~~~~~l~~i~ip~~~~------------------~i~~~~f~~~~~l~~ 257 (394)
T 4fs7_A 205 AECILLENME---FPN---SL---YYLGDFALSKTGVKNIIIPDSFT------------------ELGKSVFYGCTDLES 257 (394)
T ss_dssp TTCTTCCBCC---CCT---TC---CEECTTTTTTCCCCEEEECTTCC------------------EECSSTTTTCSSCCE
T ss_pred ccccccceee---cCC---Cc---eEeehhhcccCCCceEEECCCce------------------eccccccccccccee
Confidence 3333333322 100 00 00011122345666666643210 000123455677777
Q ss_pred EEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCccccCCCCCCCCcccccc
Q 048084 796 LRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIAF 875 (967)
Q Consensus 796 L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 875 (967)
+.+..+.. . +....+..+.+|+.+....+... -..+..+++|+.+.+.+ .++.++... +.++
T Consensus 258 ~~~~~~~~-~--i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~--~i~~I~~~a-----------F~~c 319 (394)
T 4fs7_A 258 ISIQNNKL-R--IGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLD--SVKFIGEEA-----------FESC 319 (394)
T ss_dssp EEECCTTC-E--ECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECT--TCCEECTTT-----------TTTC
T ss_pred EEcCCCcc-e--eeccccccccccceeccCceeec--ccccccccccccccccc--ccceechhh-----------hcCC
Confidence 77765432 2 32555667777777776554211 11256677888877753 355554332 2366
Q ss_pred cccccccccccccccccccccccccccccCcccceeeeccCccCcCCCc-CCCCCCCcCeEEEcCC
Q 048084 876 PKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPD-HLLQKTTLQELWISGC 940 (967)
Q Consensus 876 ~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c 940 (967)
.+|+.+.|.+ +++.+. ...+..+++|+.+.+..+ ++.+.. .|.+|++|+.+++..+
T Consensus 320 ~~L~~i~lp~--~v~~I~-----~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 320 TSLVSIDLPY--LVEEIG-----KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCCT--TCCEEC-----TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEeCC--cccEEh-----HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 7777777753 344332 235567888888888654 665543 6778889999888654
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.76 E-value=9.7e-08 Score=105.15 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
.+++||+..++.+...+.... ..+.+.|+|++|+||||+|+.+++.......+. ...+... . ....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~---~-~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVC---D-NCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSS---H-HHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCccc---H-HHHHHh
Confidence 459999999999999986432 345789999999999999999887522111110 0000000 0 001111
Q ss_pred HHh-------ccC-CCCCCChHHHHHHHHHH-hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh-HH
Q 048084 257 EAL-------TDS-ASNFGEFQSLMQRIQKH-VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA-IA 326 (967)
Q Consensus 257 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~-v~ 326 (967)
... ... ........++...+... ..+++.++|+||++.........+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 01112222222221110 134578999999987766667777777776556667777776432 11
Q ss_pred -hhhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHH
Q 048084 327 -RIMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIAS 388 (967)
Q Consensus 327 -~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 388 (967)
........+.+.+++.++..+++...+...+... ..+....|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~----~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1122346899999999999999987653322111 133467899999999998776553
No 161
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=1.1e-08 Score=98.11 Aligned_cols=103 Identities=20% Similarity=0.286 Sum_probs=85.9
Q ss_pred EEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccc-ccc
Q 048084 543 HLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTN-IEK 621 (967)
Q Consensus 543 ~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~-i~~ 621 (967)
.+.+.++.+..+|.. + .++|+.|++++|. +..+.|..|.++++|++|+|+ + |.+..+|.. +.+
T Consensus 13 ~l~~s~n~l~~ip~~----~--~~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls-----~--N~l~~l~~~~f~~ 76 (170)
T 3g39_A 13 TVDCSGKSLASVPTG----I--PTTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLD-----N--NQLTVLPAGVFDK 76 (170)
T ss_dssp EEECTTSCCSSCCSC----C--CTTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECC-----S--SCCCCCCTTTTTT
T ss_pred EEEeCCCCcCccCcc----C--CCCCcEEEcCCCc---CCccChhhhcCcccCCEEECC-----C--CCcCccChhhccC
Confidence 567777778877742 2 3889999999998 555678889999999999999 7 778888765 589
Q ss_pred CCCCcEEEccCCCCccccch-HHhccCCCCEEecCCCCCCccc
Q 048084 622 LLHLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCRNLREL 663 (967)
Q Consensus 622 l~~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~~l~~l 663 (967)
+++|++|+|++|. +..+|. .+..+++|++|+|++|. +...
T Consensus 77 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-~~c~ 117 (170)
T 3g39_A 77 LTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP-WDCA 117 (170)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-BCTT
T ss_pred CCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC-CCCC
Confidence 9999999999999 998886 48899999999999998 5433
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=4.6e-08 Score=107.74 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=61.5
Q ss_pred HhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhccccccee
Q 048084 743 RAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDL 822 (967)
Q Consensus 743 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L 822 (967)
...|..|.+|+.+.+..+....... ..-....+..+++|+.+.|.. .... ++...|.+|++|+.|
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~------------~~I~~~aF~~c~~L~~l~l~~-~i~~--I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPE------------AMIHPYCLEGCPKLARFEIPE-SIRI--LGQGLLGGNRKVTQL 328 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTT------------CEECTTTTTTCTTCCEECCCT-TCCE--ECTTTTTTCCSCCEE
T ss_pred hhHhhCCCCCCEEEeCCccccCCcc------------cEECHHHhhCCccCCeEEeCC-ceEE--EhhhhhcCCCCccEE
Confidence 3467788999999998774221000 001124677889999999983 4444 556778899999999
Q ss_pred EecCccCCCCCCC--CCCCCCccceeeccc
Q 048084 823 SLIMWRNREHLPP--LGKLPSLEDLKIQGM 850 (967)
Q Consensus 823 ~L~~~~~~~~l~~--l~~l~~L~~L~L~~c 850 (967)
.|..+ ...++. +.++ +|+.+++.++
T Consensus 329 ~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 329 TIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp EECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred EECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 99765 333333 7788 9999999874
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.74 E-value=7.2e-08 Score=103.60 Aligned_cols=185 Identities=11% Similarity=0.036 Sum_probs=115.6
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccC-CceEEEEecCCCCHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF-DERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~ 253 (967)
.-.+++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++... ...+ ...+.++.+.....
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~----- 82 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI----- 82 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-----
T ss_pred CHHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-----
Confidence 3456999999999998888532 223389999999999999998887521 1111 12334444332111
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHH--h-ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh-HHh-h
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKH--V-ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA-IAR-I 328 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~-v~~-~ 328 (967)
....+....+... + .+++.++|+|+++.........+...+.....+..+|+||.... +.. .
T Consensus 83 -------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 83 -------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp -------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred -------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 1111111111111 1 25578999999977655556667777766556777888776543 111 1
Q ss_pred hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHH
Q 048084 329 MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIAS 388 (967)
Q Consensus 329 ~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 388 (967)
......+.+.+++.++..+++...+...+.... .+....+++.++|.+..+.....
T Consensus 150 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp HTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 223458999999999999999887654332211 33467888999999986554443
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=1.3e-07 Score=104.84 Aligned_cols=317 Identities=13% Similarity=0.061 Sum_probs=188.6
Q ss_pred ccEEEEEEEecCCCCCCCcccccccCCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc-c
Q 048084 539 KKILHLMLALDRGALIPMPIWDNVKGLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-T 617 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~ 617 (967)
..++.+.+. +.+..+.. .+|.+|++|+++.+..+ +..+....|.++..|+.+.+. +.+..+. .
T Consensus 71 ~~L~~i~lp-~~i~~I~~---~aF~~c~~L~~i~lp~~----l~~I~~~aF~~c~~L~~i~~p--------~~l~~i~~~ 134 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGE---FAFENCSKLEIINIPDS----VKMIGRCTFSGCYALKSILLP--------LMLKSIGVE 134 (394)
T ss_dssp TTEEEEECC-TTCCEECT---TTTTTCTTCCEECCCTT----CCEECTTTTTTCTTCCCCCCC--------TTCCEECTT
T ss_pred CCceEEEeC-CCccCcch---hHhhCCCCCcEEEeCCC----ceEccchhhcccccchhhccc--------Cceeeecce
Confidence 467777775 34555543 57899999999999765 334456779999999998886 3344443 3
Q ss_pred ccccCCCCcEEEccCCCCccccc-hHHhccCCCCEEecCCCCCCcccC-ccccccccccEEecCCCccccccc-cCCCCC
Q 048084 618 NIEKLLHLKYLNLFCQREIEKLP-ETLCELYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRYLP-VGIEEL 694 (967)
Q Consensus 618 ~i~~l~~L~~L~Ls~~~~i~~lp-~~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l 694 (967)
.+.++..+....... +..++ ..|.+|.+|+.+.+..+ +..++ ..|.++.+|+.+.+..+ +..++ ..+.++
T Consensus 135 aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~ 207 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAEC 207 (394)
T ss_dssp TTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTC
T ss_pred eeecccccccccCcc---ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccc
Confidence 445554443333222 23333 35778889999988764 34444 34777888888888665 33333 346666
Q ss_pred CCCCcCCceEecCcCCCccCccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCC
Q 048084 695 IRLRGVTKFVVGGGYDRACSLGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRE 774 (967)
Q Consensus 695 ~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 774 (967)
..|+.+......... ...... ...|+.+.+.. .........+..+..|+.+.+..+...
T Consensus 208 ~~L~~i~~~~~~~~i--~~~~~~---~~~l~~i~ip~-----~~~~i~~~~f~~~~~l~~~~~~~~~~~----------- 266 (394)
T 4fs7_A 208 ILLENMEFPNSLYYL--GDFALS---KTGVKNIIIPD-----SFTELGKSVFYGCTDLESISIQNNKLR----------- 266 (394)
T ss_dssp TTCCBCCCCTTCCEE--CTTTTT---TCCCCEEEECT-----TCCEECSSTTTTCSSCCEEEECCTTCE-----------
T ss_pred cccceeecCCCceEe--ehhhcc---cCCCceEEECC-----CceecccccccccccceeEEcCCCcce-----------
Confidence 667665443211100 111111 12233333321 011112234567788888888655210
Q ss_pred CchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC--CCCCCCccceeeccccC
Q 048084 775 NEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP--LGKLPSLEDLKIQGMQS 852 (967)
Q Consensus 775 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~c~~ 852 (967)
.....+..+..++.+.+.... ++...+..+.+|+.+.+..+ ...++. +.++.+|+.++|.+ .
T Consensus 267 -------i~~~~F~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~ 330 (394)
T 4fs7_A 267 -------IGGSLFYNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--L 330 (394)
T ss_dssp -------ECSCTTTTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--T
T ss_pred -------eeccccccccccceeccCcee-----eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--c
Confidence 012345667788887775432 22455678889999998765 333333 77888999998853 3
Q ss_pred ceEeCccccCCCCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCc
Q 048084 853 VKRVGNEFLGVESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTL 932 (967)
Q Consensus 853 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 932 (967)
++.++... +.++.+|+.+.|.. +++.+. ...+..+++|+.+.+..+ ++.+...+.++++|
T Consensus 331 v~~I~~~a-----------F~~c~~L~~i~lp~--~l~~I~-----~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L 390 (394)
T 4fs7_A 331 VEEIGKRS-----------FRGCTSLSNINFPL--SLRKIG-----ANAFQGCINLKKVELPKR--LEQYRYDFEDTTKF 390 (394)
T ss_dssp CCEECTTT-----------TTTCTTCCEECCCT--TCCEEC-----TTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEE
T ss_pred ccEEhHHh-----------ccCCCCCCEEEECc--cccEeh-----HHHhhCCCCCCEEEECCC--CEEhhheecCCCCC
Confidence 56665432 33677888887754 344443 235667899999998754 45555567777777
Q ss_pred CeE
Q 048084 933 QEL 935 (967)
Q Consensus 933 ~~L 935 (967)
+.+
T Consensus 391 ~~I 393 (394)
T 4fs7_A 391 KWI 393 (394)
T ss_dssp EEE
T ss_pred cEE
Confidence 764
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.55 E-value=1.8e-07 Score=95.93 Aligned_cols=175 Identities=12% Similarity=0.057 Sum_probs=102.2
Q ss_pred Cccccc---hhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 177 SEIFGR---EDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 177 ~~~vGR---~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
.+|+|+ +..++.+..+... +..+.+.|+|++|+|||++|+.+++. .......+.|+.++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 457763 3556666665542 13468999999999999999999885 2222345677776532110
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhh--HHHHHhhhcCC-CCC-cEEEEecCChh-----
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYK--WEQFNNCLKNC-LHG-SKILITTRKEA----- 324 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iliTtr~~~----- 324 (967)
+ .+. + +.+ .++.++|+||++...... ...+...+... ..+ .++|+||+...
T Consensus 95 -~--------------~~~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -S--------------TAL---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -C--------------GGG---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -H--------------HHH---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 000 0 011 346799999997643222 33344433211 112 24777776422
Q ss_pred ----HHhhhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHH
Q 048084 325 ----IARIMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIAS 388 (967)
Q Consensus 325 ----v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 388 (967)
+...+.....+.+++++.++..+++...+...+... ..+....+++.++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL----PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC----CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHccCCHHHHHHHHH
Confidence 111122226899999999999999988764322211 134567888899998876665443
No 166
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=8.9e-07 Score=96.51 Aligned_cols=196 Identities=9% Similarity=0.035 Sum_probs=115.0
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCC-ceEEEEecCCCCHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD-ERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~ 253 (967)
.-.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+++.......+. .++.+..+.......+ .
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 107 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-R 107 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-T
T ss_pred CHHHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-H
Confidence 3456899999999999998533 222389999999999999999987522111121 2334444433333322 2
Q ss_pred HHHHHhccC-CCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh-HHhh-hC
Q 048084 254 AIIEALTDS-ASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA-IARI-MG 330 (967)
Q Consensus 254 ~i~~~l~~~-~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~-v~~~-~~ 330 (967)
+....+... ....... .....-.+++-++++|+++.........+...+.......++|++|.... +... ..
T Consensus 108 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp THHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 222222111 1110000 00001123456999999977655555667766665555667777765432 1111 11
Q ss_pred CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 331 SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 331 ~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
....+.+.+++.++..+.+...+...+... ..+..+.|++.++|.|..+..+
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENVKC----DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHTSSCHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 234789999999999999988764332211 1345778999999999865443
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.53 E-value=2.2e-06 Score=92.68 Aligned_cols=181 Identities=14% Similarity=0.097 Sum_probs=109.7
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
.-.+|+|++..++++..++..... .......|.|+|++|+|||++|+.+++. .... .+.+.+......
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~~------ 94 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEKS------ 94 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCSH------
T ss_pred CHHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccch------
Confidence 445799999999999998864311 0123456899999999999999999874 2222 233333322111
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC------------------CCcEE
Q 048084 255 IIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL------------------HGSKI 316 (967)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~i 316 (967)
......+.. ..+..+|++|+++.........+...+.... ++..+
T Consensus 95 ---------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 95 ---------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ---------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ---------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 111111111 2356799999998765555555655554321 12456
Q ss_pred EEecCChh-HHhh-hC-CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHH
Q 048084 317 LITTRKEA-IARI-MG-SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIAS 388 (967)
Q Consensus 317 liTtr~~~-v~~~-~~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 388 (967)
|.||.... +... .. ....+.+++++.++..+++...+...... -..+....|++.+.|.|-.+..+..
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT----CEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE----ECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65555432 1111 11 23589999999999999998876443221 1234567788899999966555443
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.51 E-value=3e-07 Score=90.44 Aligned_cols=149 Identities=11% Similarity=0.098 Sum_probs=83.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcccc---c--cCCceEEEEecCCCCHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVK---K--YFDERIWVCVSDPFDEFR 250 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~---~--~f~~~~wv~~~~~~~~~~ 250 (967)
-..++||+++++++.+.+.. ...+.+.|+|++|+|||++|+.+++..... . ....++++++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 88 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------ 88 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------
T ss_pred ccccccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------
Confidence 35689999999999999854 234668899999999999999988752110 0 112334443221
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHH---h--ccCcceEeecCCCCCC--------hhhHHHHHhhhcCCCCCcEEE
Q 048084 251 IAKAIIEALTDSASNFGEFQSLMQRIQKH---V--ARKKLLLVLDDVWNEN--------FYKWEQFNNCLKNCLHGSKIL 317 (967)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~---l--~~~r~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~il 317 (967)
+. .. ..........+... + .+++.+||+||++... ......+...+.. .+..+|
T Consensus 89 ~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i 155 (195)
T 1jbk_A 89 LV-------AG----AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCV 155 (195)
T ss_dssp HH-------TT----TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEE
T ss_pred Hh-------cc----CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEE
Confidence 10 00 00111111122221 1 3457799999996532 1123334444433 234566
Q ss_pred EecCChhHHh-------hhCCcceeecCCCChhhHHHHH
Q 048084 318 ITTRKEAIAR-------IMGSIDIISINVLSEIECWSVF 349 (967)
Q Consensus 318 iTtr~~~v~~-------~~~~~~~~~l~~l~~~~~~~l~ 349 (967)
.||....... .......+.+.+++.++..+++
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 6666544221 1122336888998888876653
No 169
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.40 E-value=5.3e-06 Score=92.32 Aligned_cols=181 Identities=14% Similarity=0.090 Sum_probs=105.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccC--CceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYF--DERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
...+.|+|++|+||||||+.+++. ....+ ..++++++. .+..++...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 567999999999999999999985 32332 234565433 3344444444321 11 12333333
Q ss_pred cCcceEeecCCCCCCh--hhHHHHHhhhcC-CCCCcEEEEecCCh---------hHHhhhCCcceeecCCCChhhHHHHH
Q 048084 282 RKKLLLVLDDVWNENF--YKWEQFNNCLKN-CLHGSKILITTRKE---------AIARIMGSIDIISINVLSEIECWSVF 349 (967)
Q Consensus 282 ~~r~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iliTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~ 349 (967)
.++-+|++||++.... ...+.+...+.. ...|..||+||.+. .+...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3678999999965432 222334333321 13466788888762 22333433457899999999999999
Q ss_pred HHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHHHH------ccC-CCHHHHHHHHhh
Q 048084 350 ELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIASLL------RSK-NTRKEWQNILES 405 (967)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~~-~~~~~w~~~l~~ 405 (967)
.+.+...+.. .++ +....|++.++|.+-.+..+...+ .+. -+.+.++.++..
T Consensus 273 ~~~~~~~~~~-i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 273 RKMLEIEHGE-LPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHTCC-CCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHcCCC-CCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8876432211 111 236678889999887655443222 122 255566555553
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.39 E-value=3.7e-07 Score=99.28 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=72.0
Q ss_pred EEEeccC-CccchhccchhhhccCCcceEEEecccCcccccccccccc-cccccCCCCcEEEccCCCCccccch-HHhcc
Q 048084 570 SLLVESN-EYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEKLLHLKYLNLFCQREIEKLPE-TLCEL 646 (967)
Q Consensus 570 ~L~l~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~l~~L~~L~Ls~~~~i~~lp~-~~~~l 646 (967)
.++++++ . +.. +|. +..+.+|+.|+|+ ++ |.+..+| ..|++|++|++|+|++|. +..+|. .|.+|
T Consensus 12 ~v~~~~~n~---l~~-ip~-l~~~~~L~~L~l~-----~~-n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l 79 (347)
T 2ifg_A 12 GLRCTRDGA---LDS-LHH-LPGAENLTELYIE-----NQ-QHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFT 79 (347)
T ss_dssp CEECCSSCC---CTT-TTT-SCSCSCCSEEECC-----SC-SSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSC
T ss_pred EEEcCCCCC---CCc-cCC-CCCCCCeeEEEcc-----CC-CCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCC
Confidence 4577766 5 333 566 8888888888886 31 4456665 567888888888888888 777654 57888
Q ss_pred CCCCEEecCCCCCCcccCccccccccccEEecCCCc
Q 048084 647 YNLERLNVSGCRNLRELPQGIGKLRKLMYLYNDRTE 682 (967)
Q Consensus 647 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~ 682 (967)
++|++|+|++|. ++.+|..+....+|+.|++.+|.
T Consensus 80 ~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 80 PRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCC
Confidence 888888888887 77777665444448888888873
No 171
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=1.7e-06 Score=94.29 Aligned_cols=199 Identities=12% Similarity=0.084 Sum_probs=109.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCc---cccc-cCCc---------------
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNG---DVKK-YFDE--------------- 236 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~---~~~~-~f~~--------------- 236 (967)
-.+++|++..++.+.+++.... .... +.|+|++|+||||+|+.+++.. .... .++.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 3568999999888888772211 1234 8999999999999998877631 1000 0000
Q ss_pred -----eEEEEecCCC-CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCC
Q 048084 237 -----RIWVCVSDPF-DEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNC 310 (967)
Q Consensus 237 -----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~ 310 (967)
.+.+..+... ......++++..+..... ..... .+. .+.+++-++|+|++...+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111100 000012222222211100 00000 000 02335679999999887666666677776654
Q ss_pred CCCcEEEEecCChh-HHh-hhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHHH
Q 048084 311 LHGSKILITTRKEA-IAR-IMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIAS 388 (967)
Q Consensus 311 ~~gs~iliTtr~~~-v~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 388 (967)
..+..+|++|.... +.. .......+.+.+++.++..+++...+...+..... .+.+..|++.++|.+..+..+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 45677777776532 211 12234689999999999999998876432221110 23467888999999876655543
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=8.9e-08 Score=104.37 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=16.4
Q ss_pred cCCCCEEecCCCCCCcc-----cCccccccccccEEecCCC
Q 048084 646 LYNLERLNVSGCRNLRE-----LPQGIGKLRKLMYLYNDRT 681 (967)
Q Consensus 646 l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~l~~~ 681 (967)
.++|++|+|++|. ++. ++..+..+++|++|++++|
T Consensus 154 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 154 QCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp TCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred CCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 3455555555554 322 2233344455555555555
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.37 E-value=6e-06 Score=91.61 Aligned_cols=180 Identities=17% Similarity=0.143 Sum_probs=104.6
Q ss_pred CCccccchhhH---HHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC-CCHHHH
Q 048084 176 ESEIFGREDEK---NDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP-FDEFRI 251 (967)
Q Consensus 176 ~~~~vGR~~~~---~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~ 251 (967)
-.+++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+++. .... ++.++.. .....+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~i 91 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEI 91 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHH
Confidence 35689998888 6777777532 3467999999999999999999985 2222 2333221 122221
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHH-HhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEE-ecCChh--H-H
Q 048084 252 AKAIIEALTDSASNFGEFQSLMQRIQK-HVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILI-TTRKEA--I-A 326 (967)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ili-Ttr~~~--v-~ 326 (967)
+.++. .... ...+++.+|++|+++.......+.+...+..+ ...+|. ||.+.. + .
T Consensus 92 -r~~~~-----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 92 -REAIE-----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNS 151 (447)
T ss_dssp -HHHHH-----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCH
T ss_pred -HHHHH-----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCH
Confidence 11111 1111 12456889999999876544445566666542 223333 555432 1 1
Q ss_pred hhhCCcceeecCCCChhhHHHHHHHHhcCCCCC---ccchhHHHHHHHHHHHcCCChhHHHHHHH
Q 048084 327 RIMGSIDIISINVLSEIECWSVFELLAFSGKSM---EERENLEKIGREIVGKCKGLPLAAKTIAS 388 (967)
Q Consensus 327 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 388 (967)
........+.+.+++.++..+++.+.+...... ....-..+....|++.++|.+..+..+..
T Consensus 152 aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 152 ALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 122334588999999999999998876541110 11112234577888889998876554443
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.37 E-value=5.6e-06 Score=86.94 Aligned_cols=186 Identities=19% Similarity=0.141 Sum_probs=102.3
Q ss_pred CCCccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
.-.+++|.++.+++|.+.+...... .-...+.+.|+|++|+|||+||+.+++. .... .+.+..+.-..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~~ 89 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELVK 89 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHHH
Confidence 4467999999999999887532000 0023467999999999999999999875 2221 23333322110
Q ss_pred HHHHHHHHHHHhccCCCCCCChHH-HHHHHHHHhccCcceEeecCCCCC-----------ChhhHHHHHhhh---c--CC
Q 048084 248 EFRIAKAIIEALTDSASNFGEFQS-LMQRIQKHVARKKLLLVLDDVWNE-----------NFYKWEQFNNCL---K--NC 310 (967)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~r~LlvlDdv~~~-----------~~~~~~~l~~~l---~--~~ 310 (967)
. ....... ....+......++.+|++|+++.. .......+...+ . ..
T Consensus 90 ~----------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 K----------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp C----------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred h----------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 0011111 122222223445679999999532 111112232222 2 12
Q ss_pred CCCcEEEEecCChhHHh-h-h---CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCC-ChhHHH
Q 048084 311 LHGSKILITTRKEAIAR-I-M---GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKG-LPLAAK 384 (967)
Q Consensus 311 ~~gs~iliTtr~~~v~~-~-~---~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~ 384 (967)
..+..||.||....... . . .....+.+++.+.++..+++...+..... ....+ ...+++.+.| .|-.|.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHH
Confidence 23556777777542211 1 1 12347899999999999999887654321 11122 4567777776 454444
Q ss_pred HH
Q 048084 385 TI 386 (967)
Q Consensus 385 ~~ 386 (967)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 175
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.36 E-value=6.2e-07 Score=97.49 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=80.8
Q ss_pred EEEec-CCCCCCCcccccccCCCCccEEEecc-CCccchhccchhhhccCCcceEEEecccCcccccccccccc-ccccc
Q 048084 545 MLALD-RGALIPMPIWDNVKGLRGLRSLLVES-NEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP-TNIEK 621 (967)
Q Consensus 545 ~~~~~-~~~~~~~~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp-~~i~~ 621 (967)
...++ .+..+| . +..+++|+.|+|++ |. +..+.+..|.++++|++|+|+ + |.+..++ ..|.+
T Consensus 14 ~~~~~n~l~~ip----~-l~~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~-----~--N~l~~~~~~~~~~ 78 (347)
T 2ifg_A 14 RCTRDGALDSLH----H-LPGAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIV-----K--SGLRFVAPDAFHF 78 (347)
T ss_dssp ECCSSCCCTTTT----T-SCSCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECC-----S--SCCCEECTTGGGS
T ss_pred EcCCCCCCCccC----C-CCCCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECC-----C--CccceeCHHHhcC
Confidence 44455 566666 5 78899999999996 87 555677889999999999999 6 6677775 56799
Q ss_pred CCCCcEEEccCCCCccccchHHhccCCCCEEecCCCC
Q 048084 622 LLHLKYLNLFCQREIEKLPETLCELYNLERLNVSGCR 658 (967)
Q Consensus 622 l~~L~~L~Ls~~~~i~~lp~~~~~l~~L~~L~L~~~~ 658 (967)
|++|++|+|++|. +..+|..+.....|++|+|.+|.
T Consensus 79 l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 79 TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred CcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCC
Confidence 9999999999999 99998765555559999999998
No 176
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.35 E-value=3.7e-06 Score=92.11 Aligned_cols=200 Identities=13% Similarity=0.070 Sum_probs=109.1
Q ss_pred CCccccchhhHHHH---HHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEec----CCCCH
Q 048084 176 ESEIFGREDEKNDL---VNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVS----DPFDE 248 (967)
Q Consensus 176 ~~~~vGR~~~~~~l---~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~~~ 248 (967)
-.+|+|++..++.+ .+.+.... ...+.+.|+|++|+|||++|+.+++... ... ..+.+... .....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~--~~~-~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG--PDT-PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC--SSC-CEEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc--ccC-Ccccccchhhhhcccch
Confidence 45799999887764 44443321 1346899999999999999999998522 111 11222221 12334
Q ss_pred HHHHHHHHHHhccC---------------------C--------C-CCCChHHHHHHHHHHh-----ccC----cceEee
Q 048084 249 FRIAKAIIEALTDS---------------------A--------S-NFGEFQSLMQRIQKHV-----ARK----KLLLVL 289 (967)
Q Consensus 249 ~~~~~~i~~~l~~~---------------------~--------~-~~~~~~~~~~~l~~~l-----~~~----r~Llvl 289 (967)
.+.+.+........ . . ......++...+.... .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 44444443331110 0 0 0000222333332221 122 359999
Q ss_pred cCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC-------------hhH-HhhhCCcceeecCCCChhhHHHHHHHHhcC
Q 048084 290 DDVWNENFYKWEQFNNCLKNCLHGSKILITTRK-------------EAI-ARIMGSIDIISINVLSEIECWSVFELLAFS 355 (967)
Q Consensus 290 Ddv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~-------------~~v-~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~ 355 (967)
|+++.........+...+...... .++++|.. ..+ .........+.+++++.++..+++...+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 999877666666677666554333 34444431 011 111222346899999999999999987654
Q ss_pred CCCCccchhHHHHHHHHHHHcC-CChhHHHHHH
Q 048084 356 GKSMEERENLEKIGREIVGKCK-GLPLAAKTIA 387 (967)
Q Consensus 356 ~~~~~~~~~~~~~~~~i~~~~~-g~Plai~~~~ 387 (967)
..... ..+....|++.+. |.|..+..+.
T Consensus 275 ~~~~~----~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 275 EDVEM----SEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp TTCCB----CHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCCCC----CHHHHHHHHHHhcCCCHHHHHHHH
Confidence 32211 1334677888887 7776555443
No 177
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.32 E-value=3.5e-06 Score=93.15 Aligned_cols=127 Identities=12% Similarity=0.174 Sum_probs=73.9
Q ss_pred hCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCC--CCCCCCccceeeccccCceEeCccccCC
Q 048084 786 ALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPP--LGKLPSLEDLKIQGMQSVKRVGNEFLGV 863 (967)
Q Consensus 786 ~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~ 863 (967)
.+..+.+|+.+.+..... . +....|.++++|+.+.+... ...++. +.++++|+.++|.. .++.++...
T Consensus 260 aF~~c~~L~~i~lp~~~~-~--I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a--- 329 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-S--IGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDA--- 329 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-E--ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTT---
T ss_pred eeeecccccEEecccccc-e--ecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhH---
Confidence 456677788877753322 2 32456677888888888643 333333 77788888888853 355555432
Q ss_pred CCCCCCcccccccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCcCCCCCCCcCeEEEcCC
Q 048084 864 ESDTDGSSVIAFPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPDHLLQKTTLQELWISGC 940 (967)
Q Consensus 864 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 940 (967)
+.++.+|+.+.|-+ +++.+. ...+..+++|+.+++.++... + ..+..+.+|+.+.+..+
T Consensus 330 --------F~~C~~L~~i~ip~--sv~~I~-----~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 330 --------FAGCEQLERIAIPS--SVTKIP-----ESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp --------TTTCTTCCEEEECT--TCCBCC-----GGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC--------
T ss_pred --------hhCCCCCCEEEECc--ccCEEh-----HhHhhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeCCC
Confidence 33677787777743 344433 235667888999988876322 1 34566778888877654
No 178
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.31 E-value=3.3e-08 Score=107.83 Aligned_cols=160 Identities=17% Similarity=0.126 Sum_probs=92.9
Q ss_pred ccEEEEEEEecCCCCCCC-ccccccc-CCCCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccc
Q 048084 539 KKILHLMLALDRGALIPM-PIWDNVK-GLRGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIP 616 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~-~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp 616 (967)
+.++.+.+.++.+..... .+...+. ..++|++|+|++|.+... .....+..+++|+.|+|++|.++. .....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~--~~~~l~~~L~~L~~L~Ls~n~l~~--~~~~~L~ 147 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA--GLRTLLPVFLRARKLGLQLNSLGP--EACKDLR 147 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH--HHHHTHHHHHTEEEEECCSSCCCH--HHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH--HHHHHHHHHHhccHhhcCCCCCCH--HHHHHHH
Confidence 456677777776653211 0111222 336888999988874311 123334556788889988322221 1111222
Q ss_pred ccc-ccCCCCcEEEccCCCCccc-----cchHHhccCCCCEEecCCCCCCcc-----cCccccccccccEEecCCCcccc
Q 048084 617 TNI-EKLLHLKYLNLFCQREIEK-----LPETLCELYNLERLNVSGCRNLRE-----LPQGIGKLRKLMYLYNDRTESLR 685 (967)
Q Consensus 617 ~~i-~~l~~L~~L~Ls~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~l~~~~~~~ 685 (967)
..+ ...++|++|+|++|. ++. ++..+..+++|++|+|++|. ++. ++..+..+++|++|++++|. ++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 223 246788899999887 654 45556778889999999887 543 34556777888899988883 33
Q ss_pred c-----cccCCCCCCCCCcCCceEe
Q 048084 686 Y-----LPVGIEELIRLRGVTKFVV 705 (967)
Q Consensus 686 ~-----~p~~~~~l~~L~~L~~~~~ 705 (967)
. ++..+...++|+.|++..+
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCC
Confidence 2 2222333445555554443
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.29 E-value=6.2e-06 Score=88.44 Aligned_cols=182 Identities=14% Similarity=0.079 Sum_probs=106.7
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
.-.+++|+++.++.+.+++... ....++.+.|++|+|||++|+.+++.. . ..++.++.+.. .. ..+++
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~-~~-~~i~~ 91 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDC-KI-DFVRG 91 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTC-CH-HHHHT
T ss_pred CHHHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEccccc-CH-HHHHH
Confidence 3457999999999999998632 234678889999999999999998752 1 12445554432 22 22222
Q ss_pred HHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC-hhhHHHHHhhhcCCCCCcEEEEecCChhH-Hhh-hCC
Q 048084 255 IIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN-FYKWEQFNNCLKNCLHGSKILITTRKEAI-ARI-MGS 331 (967)
Q Consensus 255 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~-~~~~~~l~~~l~~~~~gs~iliTtr~~~v-~~~-~~~ 331 (967)
.+........ ..+++-++|+|+++... ......+...+.....+.++|+||....- ... ...
T Consensus 92 ~~~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 PLTNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 2221111000 12367899999998765 44555566665543446678888776431 110 011
Q ss_pred cceeecCCCChhhHHHHHH-------HHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 332 IDIISINVLSEIECWSVFE-------LLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 332 ~~~~~l~~l~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
...+.+++.+.++..+++. ..+...+....+ .+....|++.++|.+..+...
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHHHH
Confidence 3478999999888544332 222211111111 245778888898887654433
No 180
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.26 E-value=1.7e-05 Score=84.98 Aligned_cols=157 Identities=17% Similarity=0.132 Sum_probs=89.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
....+.|+|++|+||||||+.+++... ..-..++++++. .+...+...+... .... +...+ .
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~-~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMY-K 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHH-H
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHh-c
Confidence 346789999999999999999998521 111234566533 3334444333211 1122 22222 2
Q ss_pred CcceEeecCCCCCCh--hhHHHHHhhhcC-CCCCcEEEEecCCh---------hHHhhhCCcceeecCCCChhhHHHHHH
Q 048084 283 KKLLLVLDDVWNENF--YKWEQFNNCLKN-CLHGSKILITTRKE---------AIARIMGSIDIISINVLSEIECWSVFE 350 (967)
Q Consensus 283 ~r~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iliTtr~~---------~v~~~~~~~~~~~l~~l~~~~~~~l~~ 350 (967)
+.-+|++||++.... .....+...+.. ...+..||+|+... .+...+.....+.+++ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 367999999966432 222333333321 12355788877642 1222333335789999 9999999998
Q ss_pred HHhcCCCCCccchhHHHHHHHHHHHcCCChhHH
Q 048084 351 LLAFSGKSMEERENLEKIGREIVGKCKGLPLAA 383 (967)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (967)
..+....... + .+....|++.+ |..-.+
T Consensus 177 ~~~~~~~~~l-~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 177 EKLKEFNLEL-R---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHTTCCC-C---HHHHHHHHHHC-SSHHHH
T ss_pred HHHHhcCCCC-C---HHHHHHHHHhC-CCHHHH
Confidence 8765332211 1 34466788888 776543
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=6e-06 Score=94.21 Aligned_cols=199 Identities=15% Similarity=0.117 Sum_probs=110.3
Q ss_pred CCCccccchhhHHHHHHHHhcCC----------C-CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEec
Q 048084 175 DESEIFGREDEKNDLVNRLICEG----------S-KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVS 243 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~----------~-~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 243 (967)
.-.+++|+++.++++.+++.... + ...+..+.+.|+|++|+|||++|+.+++.. .+ .++.++++
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s 111 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNAS 111 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCC
Confidence 34579999999999999986411 0 001234789999999999999999999852 11 23455555
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC---hhhHHHHHhhhcCCCCCcEEEEec
Q 048084 244 DPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN---FYKWEQFNNCLKNCLHGSKILITT 320 (967)
Q Consensus 244 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~---~~~~~~l~~~l~~~~~gs~iliTt 320 (967)
...... +....+........-..-...... .....+++.+||+|+++... ...+..+...+... +..||+++
T Consensus 112 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~ 186 (516)
T 1sxj_A 112 DVRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILIC 186 (516)
T ss_dssp SCCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEE
T ss_pred CcchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEE
Confidence 444332 222222221111000000000000 00013567899999996532 22235555555442 22355544
Q ss_pred CChh---HHhhhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh-hHHHHHH
Q 048084 321 RKEA---IARIMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP-LAAKTIA 387 (967)
Q Consensus 321 r~~~---v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~ 387 (967)
.... +.........+.+++++.++..+++...+...+....+ +....|++.++|.+ -++..+.
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHH
Confidence 4322 22222234578999999999999998766433221111 23667889999955 4455443
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.24 E-value=2.9e-05 Score=80.33 Aligned_cols=189 Identities=14% Similarity=0.068 Sum_probs=100.3
Q ss_pred CCccccchhhHHHHHHHHhcC--CCC----CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 176 ESEIFGREDEKNDLVNRLICE--GSK----EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~--~~~----~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
-.+++|.+..++.+.+.+... +.. .....+.+.|+|++|+|||++|+.+++. ... ..+.+.++.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~---~~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQV---PFLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTC---CEEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEechHHHHhh-
Confidence 356899988887776654311 100 0124467889999999999999999884 221 2344444432110
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC---------------hhhHHHHHhhhcCC--CC
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN---------------FYKWEQFNNCLKNC--LH 312 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~---------------~~~~~~l~~~l~~~--~~ 312 (967)
............+.......+.+|++|+++... ......+...+... ..
T Consensus 79 --------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 --------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp --------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred --------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 000001112222333333457899999996531 01122233333321 23
Q ss_pred CcEEEEecCChhHH-hhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChh-HHHHH
Q 048084 313 GSKILITTRKEAIA-RIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPL-AAKTI 386 (967)
Q Consensus 313 gs~iliTtr~~~v~-~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 386 (967)
+..||.||...... ... .....+.++..+.++..+++...+....... . .......+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~--~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-S--STFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-T--HHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-c--hhhHHHHHHHHCCCCCHHHHHHH
Confidence 45566666554321 111 1235778999999999999988764432211 1 12234678888887654 45444
Q ss_pred H
Q 048084 387 A 387 (967)
Q Consensus 387 ~ 387 (967)
.
T Consensus 222 ~ 222 (262)
T 2qz4_A 222 C 222 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.23 E-value=1.8e-05 Score=84.27 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=92.2
Q ss_pred ccccchhhHHHHHHHHhcCC---------CCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 178 EIFGREDEKNDLVNRLICEG---------SKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~---------~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
+++|.++.++.|.+.+.... -........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47898888888877654210 000224567999999999999999988775222222211123333210
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCC---------ChhhHHHHHhhhcCCCCCcEEEEe
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNE---------NFYKWEQFNNCLKNCLHGSKILIT 319 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iliT 319 (967)
.+..... ..........+... +.-+|++|+++.. .......+...+.....+..+|.|
T Consensus 109 ---------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0000000 01111122222222 4569999999732 334455666666665566778888
Q ss_pred cCChhHHhhh--------CCcceeecCCCChhhHHHHHHHHhcC
Q 048084 320 TRKEAIARIM--------GSIDIISINVLSEIECWSVFELLAFS 355 (967)
Q Consensus 320 tr~~~v~~~~--------~~~~~~~l~~l~~~~~~~l~~~~~~~ 355 (967)
|......... .....+.+++++.++..+++...+..
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 7653321110 11258899999999999999887654
No 184
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.21 E-value=2.9e-05 Score=83.23 Aligned_cols=170 Identities=10% Similarity=0.033 Sum_probs=104.6
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc--------------------cCCceEEEEe
Q 048084 183 EDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK--------------------YFDERIWVCV 242 (967)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~ 242 (967)
++..+.+...+... .-.+.+.++|++|+|||++|+.+++...-.. +++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 45566777777532 2456799999999999999988876421100 111 122221
Q ss_pred cCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh-----ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEE
Q 048084 243 SDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV-----ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKIL 317 (967)
Q Consensus 243 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~il 317 (967)
.. .......++... +.+.+ .+++-++|+|+++.........+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001112222222 22222 2457799999998776666677877777655667777
Q ss_pred EecCChh-HHh-hhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHH
Q 048084 318 ITTRKEA-IAR-IMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTI 386 (967)
Q Consensus 318 iTtr~~~-v~~-~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (967)
++|.+.. +.. .......+.+.+++.++..+++.+.. . .. .+.+..+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-MS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-CC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 7776543 222 22334689999999999999998764 1 11 233577899999999766544
No 185
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.20 E-value=4.4e-06 Score=77.33 Aligned_cols=114 Identities=17% Similarity=0.070 Sum_probs=70.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHH
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIE 257 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 257 (967)
.++|++..++++.+.+..... ...-|.|+|++|+|||++|+.+++..... . ...+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~-~-~~~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNA-Q-GEFV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTT-T-SCCE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCcc-C-CCEE-EECCCCCcc---------
Confidence 578999999999988864332 23457899999999999999998852111 1 1223 666543221
Q ss_pred HhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 258 ALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
... ...+.. ...-.|++|+++.........+...+.......++|.||..
T Consensus 66 ---------~~~---~~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQL---NDFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCH---HHHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhh---hcHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 011 111111 13457899999877655556666666554445677777764
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=2.1e-05 Score=84.77 Aligned_cols=175 Identities=10% Similarity=0.061 Sum_probs=105.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCC-ceEEEEecCCCCHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD-ERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 255 (967)
..++|.+..++.|...+... ....+.++|++|+||||+|+.+++... ...+. .+..++.+......
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~------ 91 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGID------ 91 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHH------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHH------
Confidence 45789999999988888532 222389999999999999999887521 11111 12222222222222
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHh------ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChh-HHh-
Q 048084 256 IEALTDSASNFGEFQSLMQRIQKHV------ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEA-IAR- 327 (967)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l------~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~-v~~- 327 (967)
...+.+.... .+.+-++|+|+++.........+...+......+.+|++|.... +..
T Consensus 92 ---------------~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 92 ---------------VVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp ---------------HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred ---------------HHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 1222222111 13467899999976655556667666665455667777765432 111
Q ss_pred hhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHH
Q 048084 328 IMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAA 383 (967)
Q Consensus 328 ~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (967)
.......+.+.+++.++..+.+...+....... + .+..+.|++.++|.+--+
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i-~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL-S---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB-C---HHHHHHHHHHHTTCHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHH
Confidence 112234789999999999998887663322211 1 234677888899988743
No 187
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.16 E-value=4e-05 Score=84.57 Aligned_cols=308 Identities=10% Similarity=0.074 Sum_probs=163.1
Q ss_pred ccccCCC-CccEEEeccCCccchhccchhhhccCCcceEEEecccCcccc-cccccccc-cccccCCCCcEEEccCCCCc
Q 048084 560 DNVKGLR-GLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSC-ENYIKEIP-TNIEKLLHLKYLNLFCQREI 636 (967)
Q Consensus 560 ~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c-~~~~~~lp-~~i~~l~~L~~L~Ls~~~~i 636 (967)
.+|.+++ .|+++.+-.+ +..+-...|.+|.+|+.+.+. .. ...+..+. ..|.++.+|+.+.+..+ +
T Consensus 57 ~aF~~~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~-----~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~ 125 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQ-----DNKPSCVKKIGRQAFMFCSELTDIPILDS--V 125 (394)
T ss_dssp TTTTTCCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEG-----GGCCCCCCEECTTTTTTCTTCCBCGGGTT--C
T ss_pred hhccCCCCcCEEEEECCC----eeEEhHHHhhCCccCceEeec-----CCCCCeeeEechhhchhcccceeeccCCc--c
Confidence 4567774 5888888654 344566778888888888886 31 12244453 44666777877776554 5
Q ss_pred cccch-HHhccCCCCEEecCCCCCCcccC-ccccccccccEEecCCCccccccccCCCCCCCCCcCCceEecCcCCCccC
Q 048084 637 EKLPE-TLCELYNLERLNVSGCRNLRELP-QGIGKLRKLMYLYNDRTESLRYLPVGIEELIRLRGVTKFVVGGGYDRACS 714 (967)
Q Consensus 637 ~~lp~-~~~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~ 714 (967)
+.++. .+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+....-...+|+.+.+-. .
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~---~------ 192 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA---K------ 192 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT---T------
T ss_pred ceehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECC---c------
Confidence 55553 4677888888888653 34443 34667778888777653 233332211122333221110 0
Q ss_pred ccccccCCCCCCeEEcCcCCCCChhhhHHhhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCC
Q 048084 715 LGSLKKLNLLRECWICGLGGVSDAGEARRAELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLK 794 (967)
Q Consensus 715 l~~l~~L~~L~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 794 (967)
+. ......+..+.+|....................... .............+.
T Consensus 193 ~~-----------------------~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 245 (394)
T 4gt6_A 193 VT-----------------------RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSAN----GDYALIRYPSQREDP 245 (394)
T ss_dssp CC-----------------------EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTT----SCEEEEECCTTCCCS
T ss_pred cc-----------------------ccccchhhhccccceecccccccccccceeeccccc----ccccccccccccccc
Confidence 00 000011222223332222211100000000000000 000000011122333
Q ss_pred eEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCCCCCCCCCccceeeccccCceEeCccccCCCCCCCCccccc
Q 048084 795 ELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLPPLGKLPSLEDLKIQGMQSVKRVGNEFLGVESDTDGSSVIA 874 (967)
Q Consensus 795 ~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~ 874 (967)
.+.+.. .... +....|.++.+|+.+.+..+...-.-..+.++++|+.+.+.. .++.++... +.+
T Consensus 246 ~~~ip~-~v~~--i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~a-----------F~~ 309 (394)
T 4gt6_A 246 AFKIPN-GVAR--IETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESV-----------FAG 309 (394)
T ss_dssp EEECCT-TEEE--ECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTT-----------TTT
T ss_pred eEEcCC-cceE--cccceeeecccccEEecccccceecCcccccccccccccCCC--cccccCcee-----------ecC
Confidence 333321 1111 224567788999999987652211222377889999998853 455565433 336
Q ss_pred ccccccccccccccccccccccccccccccCcccceeeeccCccCcCCCc-CCCCCCCcCeEEEcCCcch
Q 048084 875 FPKLKLLRFDNMKELEELDFRTAIKGEIIIMPRLSSLQILRCLKLKALPD-HLLQKTTLQELWISGCPIL 943 (967)
Q Consensus 875 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l 943 (967)
+.+|+.+.|.+ +++.+. ...+..+.+|+.+.|-. .++.+.. .|.+|++|+.+++.++...
T Consensus 310 c~~L~~i~lp~--~v~~I~-----~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 310 CISLKSIDIPE--GITQIL-----DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp CTTCCEEECCT--TCCEEC-----TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred CCCcCEEEeCC--cccEeh-----HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceee
Confidence 78888888754 344433 23566899999999975 3777764 6889999999999987653
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.10 E-value=0.00015 Score=77.10 Aligned_cols=191 Identities=19% Similarity=0.119 Sum_probs=104.1
Q ss_pred CCCccccchhhHHHHHHHHhcC---C---CCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 175 DESEIFGREDEKNDLVNRLICE---G---SKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~---~---~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
.-.+++|.++.++.|.+.+..+ + .......+.+.|+|++|+|||+||+.+++... .. ..+.+..+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh-
Confidence 3456899999888888776321 0 00112347899999999999999999998520 11 123333332110
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhccCcceEeecCCCCCC-------hhh----HHHHHhhhcC---CCCC
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQK-HVARKKLLLVLDDVWNEN-------FYK----WEQFNNCLKN---CLHG 313 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlvlDdv~~~~-------~~~----~~~l~~~l~~---~~~g 313 (967)
.. ....+.....+.. .-..++.+|++|+++... ... ...+...+.. ...+
T Consensus 85 -------------~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 -------------KW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp -------------SS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred -------------hh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 00 0111222222222 224567899999996420 011 1222222322 1234
Q ss_pred cEEEEecCChh-HHhh--hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCC-hhHHHHHHHH
Q 048084 314 SKILITTRKEA-IARI--MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGL-PLAAKTIASL 389 (967)
Q Consensus 314 s~iliTtr~~~-v~~~--~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~~ 389 (967)
..||.||.... +... -.....+.++..+.++..+++..+......... ......|++.+.|. +-.|..+...
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45555665432 1111 122357888999999999999887643321111 23367788888886 5456655543
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.09 E-value=5.1e-05 Score=81.92 Aligned_cols=189 Identities=17% Similarity=0.081 Sum_probs=102.8
Q ss_pred CCCccccchhhHHHHHHHHhcC---C---CCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 175 DESEIFGREDEKNDLVNRLICE---G---SKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~---~---~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
.-.+++|.+..++.|.+.+..+ + .......+.|.|+|++|+|||+||+.+++. .... .+.+.++
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH-----
Confidence 3456899999999998887321 0 001123456889999999999999999985 2221 2233222
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhccCcceEeecCCCCCChh-----------hHHHHHhhhcC---CCCC
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQK-HVARKKLLLVLDDVWNENFY-----------KWEQFNNCLKN---CLHG 313 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlvlDdv~~~~~~-----------~~~~l~~~l~~---~~~g 313 (967)
++.. ... ...+.....+.. .-..++.+|+||+++..... ....+...+.. ...+
T Consensus 119 -~l~~--------~~~--g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 -DLVS--------KWM--GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp -HHHS--------CC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred -HHhh--------hhc--chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1111 000 111222222222 22356789999999643210 12223333321 1234
Q ss_pred cEEEEecCChh-HHh--hhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCC-ChhHHHHHHH
Q 048084 314 SKILITTRKEA-IAR--IMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKG-LPLAAKTIAS 388 (967)
Q Consensus 314 s~iliTtr~~~-v~~--~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 388 (967)
..||.||.... +.. .-.....+.++..+.++..+++...+........ ......|++.+.| .+-.|..+..
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55555665432 111 1122357788999999999999887644321111 2235678888887 4555555543
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.08 E-value=3.1e-06 Score=82.44 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=38.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
-..++||+++++.+.+.+... ..+.+.|+|++|+|||++|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999998542 3456789999999999999988875
No 191
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.07 E-value=2.2e-06 Score=83.12 Aligned_cols=118 Identities=13% Similarity=0.025 Sum_probs=82.2
Q ss_pred ccccCCCCccEEEeccC-Cccch-hccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCcc
Q 048084 560 DNVKGLRGLRSLLVESN-EYSWS-RVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIE 637 (967)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~-~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~ 637 (967)
..+...+.|++|+|++| .+... ...+...+...+.|++|+|+++.+.. .....+...+...++|++|+|++|. |.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~--~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND--PVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH--HHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh--HHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 45677889999999998 64321 11244556778899999998433322 2223355556677889999999998 76
Q ss_pred c-----cchHHhccCCCCEEec--CCCCCCcc-----cCccccccccccEEecCCC
Q 048084 638 K-----LPETLCELYNLERLNV--SGCRNLRE-----LPQGIGKLRKLMYLYNDRT 681 (967)
Q Consensus 638 ~-----lp~~~~~l~~L~~L~L--~~~~~l~~-----lp~~l~~l~~L~~L~l~~~ 681 (967)
. +...+...++|++|+| ++|. ++. +...+...++|++|++++|
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4 4556777888999999 7777 533 3345666788999999888
No 192
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.07 E-value=3.4e-05 Score=80.22 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=90.2
Q ss_pred CccccchhhHHHHHHH-------HhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 177 SEIFGREDEKNDLVNR-------LICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~-------L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
..++|+...++++... +.... ....+.+.|+|++|+|||++|+.+++. .... .+.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~~~--- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPDKM--- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGGGC---
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHHHh---
Confidence 3577887777766663 32111 235678999999999999999999884 2111 2233322110
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCC----------ChhhHHHHHhhhcC---CCCCcEE
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNE----------NFYKWEQFNNCLKN---CLHGSKI 316 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~i 316 (967)
... ............+......++.+|++|+++.. .......+...+.. ......|
T Consensus 102 ----------~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 ----------IGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ----------TTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ----------cCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 000 00000011222233333456889999998431 11112333333332 1223346
Q ss_pred EEecCChhHHhh---hCC-cceeecCCCCh-hhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCC
Q 048084 317 LITTRKEAIARI---MGS-IDIISINVLSE-IECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGL 379 (967)
Q Consensus 317 liTtr~~~v~~~---~~~-~~~~~l~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (967)
|.||........ ... ...+.+++++. ++..+++.+.. . .. .+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCC
Confidence 667776643332 111 45788999988 66666665431 1 11 23366778888773
No 193
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.06 E-value=7.4e-05 Score=79.63 Aligned_cols=189 Identities=17% Similarity=0.090 Sum_probs=104.6
Q ss_pred CCCccccchhhHHHHHHHHhcC---C---CCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 175 DESEIFGREDEKNDLVNRLICE---G---SKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~---~---~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
.-.+++|.++.++.|.+.+..+ + .......+.+.|+|++|+|||+||+.+++. .... .+.++++
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~----- 85 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS----- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH-----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH-----
Confidence 3457899999999999887311 0 001223467999999999999999999885 2222 2333321
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhccCcceEeecCCCCCCh-----------hhHHHHHhhhc---CCCCC
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQK-HVARKKLLLVLDDVWNENF-----------YKWEQFNNCLK---NCLHG 313 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlvlDdv~~~~~-----------~~~~~l~~~l~---~~~~g 313 (967)
++.. .. ....+.....+.. .-..++.+|++|+++.... .....+...+. ....+
T Consensus 86 -~l~~----~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 -DLVS----KW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp -HHHT----TT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred -HHhh----cc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 1111 00 0111222222222 2234568999999964211 11233333332 22345
Q ss_pred cEEEEecCChhH-Hhh--hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCC-ChhHHHHHHH
Q 048084 314 SKILITTRKEAI-ARI--MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKG-LPLAAKTIAS 388 (967)
Q Consensus 314 s~iliTtr~~~v-~~~--~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 388 (967)
..||.||..... ... -.....+.++..+.++..+++...+......... .....|++.+.| .+-.|..+..
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK----EDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH----HHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcCCCCHHHHHHHHH
Confidence 556656665321 111 1123467888899999999999887543221121 235678888877 4555555543
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.04 E-value=6.1e-05 Score=81.46 Aligned_cols=190 Identities=13% Similarity=0.073 Sum_probs=104.0
Q ss_pred CCCccccchhhHHHHHHHHhcC---CC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 175 DESEIFGREDEKNDLVNRLICE---GS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~---~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
.-.+++|.+..++.|.+.+..+ +. ......+.|.|+|++|+|||+||+.+++. ... ..+.++++.....
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTSK 156 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCCS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhcc
Confidence 3456899999999998887531 00 00124567999999999999999999874 221 2344544321110
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhccCcceEeecCCCCCC-----------hhhHHHHHhhhcCC----CC
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQK-HVARKKLLLVLDDVWNEN-----------FYKWEQFNNCLKNC----LH 312 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlvlDdv~~~~-----------~~~~~~l~~~l~~~----~~ 312 (967)
...........+.. .-..++.+|+||+++... ......+...+... ..
T Consensus 157 ----------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 157 ----------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp ----------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred ----------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00111122222222 223557899999984210 01122333333321 23
Q ss_pred CcEEEEecCChh-HHhhh--CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCC-ChhHHHHHHH
Q 048084 313 GSKILITTRKEA-IARIM--GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKG-LPLAAKTIAS 388 (967)
Q Consensus 313 gs~iliTtr~~~-v~~~~--~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 388 (967)
+..||.||.... +...+ .....+.++..+.++..+++...+........ .+....|++.+.| .+-.|..+..
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 444555665432 11111 12346788889999999999877643221111 2346778888888 5556666544
Q ss_pred H
Q 048084 389 L 389 (967)
Q Consensus 389 ~ 389 (967)
.
T Consensus 297 ~ 297 (357)
T 3d8b_A 297 E 297 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 195
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=2.5e-06 Score=86.90 Aligned_cols=106 Identities=23% Similarity=0.205 Sum_probs=51.6
Q ss_pred cCCCCccE--EEeccCCccchhccchhhhccCCcceEEEecccCcccccccccc---cccccccCCCCcEEEccCCCCcc
Q 048084 563 KGLRGLRS--LLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKE---IPTNIEKLLHLKYLNLFCQREIE 637 (967)
Q Consensus 563 ~~~~~Lr~--L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~---lp~~i~~l~~L~~L~Ls~~~~i~ 637 (967)
...+.|.. ++++.|....+...++-...++++|+.|+|+ + |.+.. +|..++.+++|++|+|++|. +.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls-----~--N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~ 209 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLS-----N--NRLYRLDDMSSIVQKAPNLKILNLSGNE-LK 209 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECT-----T--SCCCCCGGGTTHHHHSTTCCEEECTTSC-CC
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECC-----C--CCCCCCccchhHHhhCCCCCEEECCCCc-cC
Confidence 33444444 4444443222222223333456666666666 3 33333 23444566666666666666 55
Q ss_pred ccchHHhccC--CCCEEecCCCCCCcccCc-------cccccccccEEe
Q 048084 638 KLPETLCELY--NLERLNVSGCRNLRELPQ-------GIGKLRKLMYLY 677 (967)
Q Consensus 638 ~lp~~~~~l~--~L~~L~L~~~~~l~~lp~-------~l~~l~~L~~L~ 677 (967)
.+.. +..+. +|++|+|++|..-..+|. .+..+++|+.|+
T Consensus 210 ~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 210 SERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred Cchh-hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 5532 33333 666666666662233331 244555555554
No 196
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=2.1e-06 Score=92.54 Aligned_cols=40 Identities=8% Similarity=0.019 Sum_probs=24.5
Q ss_pred CCCCCCeEEEeeeCCCCCC---CCCchhhcccccceeEecCccC
Q 048084 789 PPSNLKELRIDEYGGRRNV---VPINWIMSLTNLRDLSLIMWRN 829 (967)
Q Consensus 789 ~~~~L~~L~L~~~~~~~~~---~~~~~l~~l~~L~~L~L~~~~~ 829 (967)
.+++|++|+|+.|.+.... + +..+.++++|+.|+|++|.+
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L-~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLL-LDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHH-HTTHHHHTTCSEEECCSBBC
T ss_pred cCCCCCEEECCCCCCChHHHHHH-HhhcccCCcceEEECCCCcC
Confidence 4577888888766544310 1 22234677888888887743
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.99 E-value=0.00034 Score=73.71 Aligned_cols=186 Identities=15% Similarity=0.085 Sum_probs=101.1
Q ss_pred CCCccccchhhHHHHHHHHhcCCC------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGS------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
.-.+++|.+..++.+.+.+..+.. .-....+.+.|+|++|+|||++|+.+++. ... ..+.++++....
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~---~~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSA---TFLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTC---EEEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCC---CeEEeeHHHHhh-
Confidence 345699999999999888743100 00113468899999999999999999875 221 123444332111
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHH-HHhccCcceEeecCCCCCC-----------hhhHHHHHhhhc---CC--C
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQ-KHVARKKLLLVLDDVWNEN-----------FYKWEQFNNCLK---NC--L 311 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~r~LlvlDdv~~~~-----------~~~~~~l~~~l~---~~--~ 311 (967)
. ...+.......+. .....++.+|++|+++... ......+...+. .. .
T Consensus 93 -------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -------------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -------------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -------------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 0111222222222 2223567899999995421 011112222222 11 1
Q ss_pred CCcEEEEecCChh-----HHhhhCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChh-HHHH
Q 048084 312 HGSKILITTRKEA-----IARIMGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPL-AAKT 385 (967)
Q Consensus 312 ~gs~iliTtr~~~-----v~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~ 385 (967)
.+..||.||.... +... ....+.++..+.++..+++...+........ .+....+++.+.|.+- ++..
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHH
Confidence 2345666666532 2222 2246777888888888888877643221111 2346678888888775 5554
Q ss_pred HH
Q 048084 386 IA 387 (967)
Q Consensus 386 ~~ 387 (967)
+.
T Consensus 232 l~ 233 (297)
T 3b9p_A 232 LA 233 (297)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 198
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.94 E-value=3.6e-05 Score=74.31 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=66.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhcc
Q 048084 182 REDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTD 261 (967)
Q Consensus 182 R~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 261 (967)
+++.++.+.+++..-.. .....++|+|++|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 44555555555543221 234689999999999999999998853211122 344553 44455555444432
Q ss_pred CCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHH--HHHhhhcCC-CCCcEEEEecCC
Q 048084 262 SASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWE--QFNNCLKNC-LHGSKILITTRK 322 (967)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iliTtr~ 322 (967)
... ...... +. +.-+||+||++....+.|. .+...+... ..|..+|+||..
T Consensus 89 ~~~-----~~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKD-----TKFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCC-----SHHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chH-----HHHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 211 122222 22 4679999999743223333 343333321 246678888874
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.92 E-value=0.00021 Score=75.24 Aligned_cols=182 Identities=14% Similarity=0.070 Sum_probs=100.4
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
-.+++|.++.+++|.+.+..+-. ..-...+.+.|+|++|+|||+||+.+++. ... -++.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~-----~~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC-----EEEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCC-----CEEEEE----h
Confidence 35689999988888887753200 00124567999999999999999999985 221 122222 2
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC--------------hhhHHHHHhhhcCC--CC
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN--------------FYKWEQFNNCLKNC--LH 312 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~--------------~~~~~~l~~~l~~~--~~ 312 (967)
.++... ..... .......+.......+.++++|+++... ......+...+... ..
T Consensus 83 ~~l~~~----~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLTM----WFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHH----HHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHhh----hcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 233222 21111 1122333333334567899999995310 01123344444321 23
Q ss_pred CcEEEEecCChh-HHhh-hC---CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhH
Q 048084 313 GSKILITTRKEA-IARI-MG---SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLA 382 (967)
Q Consensus 313 gs~iliTtr~~~-v~~~-~~---~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 382 (967)
+..||.||.... +... .. ....+.++..+.++..+++......... ....+ ...+++.+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHH
Confidence 456666776543 2111 11 2347889999999999999877643221 11122 23556667776643
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.92 E-value=0.00023 Score=79.23 Aligned_cols=191 Identities=18% Similarity=0.096 Sum_probs=102.3
Q ss_pred CCCccccchhhHHHHHHHHhcC---CC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 175 DESEIFGREDEKNDLVNRLICE---GS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~---~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
.-.+++|.++.++.|.+.+..+ +. ......+.+.|+|++|+|||+||+.+++.. ...-++.++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~-- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD-- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH--
Confidence 4457899999999998877321 00 001234789999999999999999999852 112233333221
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC-------hh----hHHHHHhhhcC---CCCCc
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN-------FY----KWEQFNNCLKN---CLHGS 314 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~-------~~----~~~~l~~~l~~---~~~gs 314 (967)
+.... .+ . .......+ +...-..++.+|+||+++... .. ....+...+.. ...+.
T Consensus 204 --l~~~~---~g-~--~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 --LVSKW---LG-E--SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred --HHhhh---cc-h--HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 11110 01 0 11122222 222223567899999996431 01 11222222222 13455
Q ss_pred EEEEecCChhH-Hhh-h-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCC-ChhHHHHHHH
Q 048084 315 KILITTRKEAI-ARI-M-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKG-LPLAAKTIAS 388 (967)
Q Consensus 315 ~iliTtr~~~v-~~~-~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 388 (967)
.||.||..... ... . .....+.++..+.++..+++..++........ ......|++.+.| .+-.|..+..
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66667665421 111 1 22347788888889999999887643221111 2235678888888 4545555543
No 201
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=3.4e-06 Score=90.89 Aligned_cols=134 Identities=18% Similarity=0.181 Sum_probs=77.8
Q ss_pred ccEEEEEEEecCCCC-CC----CcccccccCCCCccEEEeccCCc-----cchh-ccchhhhccCCcceEEEecccCccc
Q 048084 539 KKILHLMLALDRGAL-IP----MPIWDNVKGLRGLRSLLVESNEY-----SWSR-VILPQLFDKLICLRALKLEVRGWRS 607 (967)
Q Consensus 539 ~~~~~l~~~~~~~~~-~~----~~~~~~~~~~~~Lr~L~l~~~~~-----~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~ 607 (967)
..++.+.+....... .. ..+......+++|++|.+..+.. ++.. .-+...+..+++|+.|.|+ +
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~-----g 181 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK-----G 181 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEE-----C
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEe-----C
Confidence 456777776543220 00 01112345678999998866532 1111 1245667888999999998 5
Q ss_pred ccccccccccccccCCCCcEEEccCCCCccc-cchHHh--ccCCCCEEecCCCCC-------CcccCccc--cccccccE
Q 048084 608 CENYIKEIPTNIEKLLHLKYLNLFCQREIEK-LPETLC--ELYNLERLNVSGCRN-------LRELPQGI--GKLRKLMY 675 (967)
Q Consensus 608 c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~-lp~~~~--~l~~L~~L~L~~~~~-------l~~lp~~l--~~l~~L~~ 675 (967)
|. -..++. + .+++|++|+|..|. +.. ....+. .+++|++|+|+.+.. +..+...+ ..+++|++
T Consensus 182 ~~--~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~ 256 (362)
T 2ra8_A 182 TN--NLSIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256 (362)
T ss_dssp CB--TCBCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred CC--Cceecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence 31 123443 3 37899999998877 542 122333 789999999864210 11221222 24788888
Q ss_pred EecCCCc
Q 048084 676 LYNDRTE 682 (967)
Q Consensus 676 L~l~~~~ 682 (967)
|++.+|.
T Consensus 257 L~L~~~~ 263 (362)
T 2ra8_A 257 LGIVDAE 263 (362)
T ss_dssp EEEESCT
T ss_pred EeCCCCC
Confidence 8888774
No 202
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.83 E-value=1.5e-05 Score=73.50 Aligned_cols=111 Identities=9% Similarity=0.080 Sum_probs=64.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
-.++|++..++++.+.+..... ...-|.|+|++|+|||++|+.+++... ..+.++++. ... ..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~---~~~---~~- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE---YLI---DM- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT---HHH---HC-
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh---CCh---Hh-
Confidence 3578999999999888754321 224588999999999999999887521 222332221 110 00
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCC-CCCcEEEEecCC
Q 048084 257 EALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNC-LHGSKILITTRK 322 (967)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iliTtr~ 322 (967)
...+... .+.-.+++|+++.........+...+... ..+.++|.||..
T Consensus 67 ----------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ----------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111111 23457899999876655555555555432 245678877763
No 203
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.83 E-value=7.3e-05 Score=77.33 Aligned_cols=133 Identities=12% Similarity=0.158 Sum_probs=69.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
..++|++..+.++.+.+..... ....|.|+|++|+|||++|+.+++... ..-...+.++++.. .. ..+...+
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~-~~-~~~~~~l 77 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL-NE-NLLDSEL 77 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGS-CH-HHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCC-Ch-hHHHHHh
Confidence 3589999999988877754322 234688999999999999999998521 11123455665543 22 2222111
Q ss_pred HHhccCCCCCCCh-HHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCC-----------CCCcEEEEecCC
Q 048084 257 EALTDSASNFGEF-QSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNC-----------LHGSKILITTRK 322 (967)
Q Consensus 257 ~~l~~~~~~~~~~-~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iliTtr~ 322 (967)
++......... ......+. ....-+|+||+++.........+...+... ....+||.||..
T Consensus 78 --~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 78 --FGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp --HCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred --cCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 11110000000 00000111 123468999999876555445555555432 134578887775
No 204
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=0.00013 Score=76.49 Aligned_cols=148 Identities=13% Similarity=0.012 Sum_probs=93.7
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCcc-cc-ccCCceEEEEecC-CCCHHHHHHHHHH
Q 048084 181 GREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGD-VK-KYFDERIWVCVSD-PFDEFRIAKAIIE 257 (967)
Q Consensus 181 GR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~-~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~ 257 (967)
|-++.++.+...+.. ++.+...++|++|+||||+|+.+.+... .. .+. -+.++..+. ...+..+ +++.+
T Consensus 1 g~~~~~~~L~~~i~~------~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~-d~~~l~~~~~~~~id~i-r~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEK------SEGISILINGEDLSYPREVSLELPEYVEKFPPKAS-DVLEIDPEGENIGIDDI-RTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHT------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTT-TEEEECCSSSCBCHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHC------CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCC-CEEEEcCCcCCCCHHHH-HHHHH
Confidence 445667777777753 2367899999999999999998876310 11 122 234444332 2232222 23333
Q ss_pred HhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh-hHHhhhCCcceee
Q 048084 258 ALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE-AIARIMGSIDIIS 336 (967)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~~~~~~~~~ 336 (967)
.+.... ..+++-++|+|+++.........+...+......+.+|++|.+. .+...+... .++
T Consensus 73 ~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 73 FLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred HHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 332111 12356799999998877677778888887766677777766543 333333334 899
Q ss_pred cCCCChhhHHHHHHHHh
Q 048084 337 INVLSEIECWSVFELLA 353 (967)
Q Consensus 337 l~~l~~~~~~~l~~~~~ 353 (967)
+.+++.++..+.+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998775
No 205
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.82 E-value=7.9e-05 Score=78.38 Aligned_cols=160 Identities=11% Similarity=0.097 Sum_probs=87.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
..++|++..+.++.+.+..... ....|.|+|++|+|||++|+.+.+... ..-...+.++++... ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~~~~~~--~~l~~~-- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSA--RSDRPLVTLNCAALN--ESLLES-- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEECSSCC--HHHHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEeCCCCC--hHHHHH--
Confidence 4589999999999988865432 334688999999999999999987411 111123455555432 222222
Q ss_pred HHhccCCCC-CCCh-HHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecCCh
Q 048084 257 EALTDSASN-FGEF-QSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTRKE 323 (967)
Q Consensus 257 ~~l~~~~~~-~~~~-~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr~~ 323 (967)
.+.+.... .... ......+... ..-.|+||+++.........+...+.... ...+||.||...
T Consensus 72 -~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 72 -ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp -HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred -HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 22221110 0000 0000111111 23579999998776555555666554321 246788777653
Q ss_pred h---H---------HhhhCCcceeecCCCC--hhhHHHHHHH
Q 048084 324 A---I---------ARIMGSIDIISINVLS--EIECWSVFEL 351 (967)
Q Consensus 324 ~---v---------~~~~~~~~~~~l~~l~--~~~~~~l~~~ 351 (967)
- + ...+. ...+.+++|. .++...++..
T Consensus 148 l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHH
Confidence 1 1 11111 2357788888 4565555543
No 206
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=1.9e-05 Score=74.18 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=47.1
Q ss_pred CCccEEEeccCCccchhccchhhhccCCcceEEEecccCcccccccccccccccccC----CCCcEEEccCCCCccccc-
Q 048084 566 RGLRSLLVESNEYSWSRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKL----LHLKYLNLFCQREIEKLP- 640 (967)
Q Consensus 566 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l----~~L~~L~Ls~~~~i~~lp- 640 (967)
-.|+.|+++++... ..--..+.+|++|+.|+|+ +|......--..++.+ ++|++|+|++|..|+.-.
T Consensus 61 ~~L~~LDLs~~~It---d~GL~~L~~~~~L~~L~L~-----~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIM---SIGFDHMEGLQYVEKIRLC-----KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCCCC---GGGGGGGTTCSCCCEEEEE-----SCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCCcc---HHHHHHhcCCCCCCEEEeC-----CCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 35777777776632 1112225667777777776 5543222212233332 356677777665455321
Q ss_pred hHHhccCCCCEEecCCCCCCcc
Q 048084 641 ETLCELYNLERLNVSGCRNLRE 662 (967)
Q Consensus 641 ~~~~~l~~L~~L~L~~~~~l~~ 662 (967)
..+..+++|++|+|++|..++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 2345666666666666665543
No 207
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.80 E-value=0.0002 Score=78.62 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=23.6
Q ss_pred CCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeEecCccCCCCCC--CCCCCCCccceeec
Q 048084 788 GPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLSLIMWRNREHLP--PLGKLPSLEDLKIQ 848 (967)
Q Consensus 788 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~ 848 (967)
..+.+|+.+.+..+ ... +....+.++.+|+.+.+..+ ...++ .+..+++|+.+.+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~--I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTS--IGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp TTCSSCCEEEECTT-CCE--ECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEEC
T ss_pred cCCccceEEEcCCC-ccE--eCccccceeehhcccccccc--ceecccccccccccccccccc
Confidence 34445555555322 111 22334445555555555432 11121 14445555555554
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.80 E-value=0.00055 Score=75.04 Aligned_cols=189 Identities=15% Similarity=0.093 Sum_probs=100.3
Q ss_pred CCCCccccchhhHHHHHHHHhcCCC------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGS------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
..-.+++|.+..++.|.+.+..... ......+.+.|+|++|+|||+||+.+++. ... ..+.++++.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhc
Confidence 3445799999999999988732100 00113467999999999999999999874 211 223443332211
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHH-HHHhccCcceEeecCCCCCC-----------hhhHHHHHhhhc---C-CC
Q 048084 248 EFRIAKAIIEALTDSASNFGEFQSLMQRI-QKHVARKKLLLVLDDVWNEN-----------FYKWEQFNNCLK---N-CL 311 (967)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~~r~LlvlDdv~~~~-----------~~~~~~l~~~l~---~-~~ 311 (967)
. . ....+.....+ ...-...+.+|+||+++... ......+...+. . ..
T Consensus 187 ~--~--------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 K--Y--------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c--c--------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0 0 00111222222 22223456799999995320 011112222222 1 12
Q ss_pred CCcEEEEecCChh-HHhh-h-CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChh-HHHHHH
Q 048084 312 HGSKILITTRKEA-IARI-M-GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPL-AAKTIA 387 (967)
Q Consensus 312 ~gs~iliTtr~~~-v~~~-~-~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 387 (967)
....||.||.... +... . .....+.++..+.++..+++...+........ .+....|++.+.|..- +|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 2344555665422 1111 1 12246888999999999999887644322111 2346678888887544 555544
No 209
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=1.3e-05 Score=75.23 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=64.4
Q ss_pred CcceEEEecccCcccccccccc-cccccccCCCCcEEEccCCCCccccc-hHHhcc----CCCCEEecCCCCCCccc-Cc
Q 048084 593 ICLRALKLEVRGWRSCENYIKE-IPTNIEKLLHLKYLNLFCQREIEKLP-ETLCEL----YNLERLNVSGCRNLREL-PQ 665 (967)
Q Consensus 593 ~~L~~L~L~~~~~~~c~~~~~~-lp~~i~~l~~L~~L~Ls~~~~i~~lp-~~~~~l----~~L~~L~L~~~~~l~~l-p~ 665 (967)
..|+.|||+ +|. ++. -...+.++++|++|+|++|..|+.-. ..+..+ ++|++|+|++|..++.- -.
T Consensus 61 ~~L~~LDLs-----~~~--Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDAT-----DSC--IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEE-----SCC--CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCc-----CCC--ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 479999999 754 332 23457789999999999998676422 234543 57999999999877642 13
Q ss_pred cccccccccEEecCCCccccc
Q 048084 666 GIGKLRKLMYLYNDRTESLRY 686 (967)
Q Consensus 666 ~l~~l~~L~~L~l~~~~~~~~ 686 (967)
.+.++++|++|++++|+.++.
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 467899999999999976654
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.80 E-value=0.0003 Score=78.73 Aligned_cols=185 Identities=12% Similarity=0.100 Sum_probs=101.3
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
.+++|.+..+++|.+.+...... .....+-|.|+|++|+|||++|+.+++. .... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch------
Confidence 46899999999998887532000 0123457999999999999999999874 2222 2344322
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCC--------C---hhhHHHHHhhhcCC--CCCcEE
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNE--------N---FYKWEQFNNCLKNC--LHGSKI 316 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~--------~---~~~~~~l~~~l~~~--~~gs~i 316 (967)
++. .... ..........+.....+++.+|+||+++.. . ......+...+... .....|
T Consensus 273 ~l~--------~~~~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 EIM--------SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp HHH--------TSCT-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred Hhh--------hhhc-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 111 0000 011122233334444566789999998311 0 01122344444321 234455
Q ss_pred EEecCChh-HHhhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCC-hhHHHHH
Q 048084 317 LITTRKEA-IARIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGL-PLAAKTI 386 (967)
Q Consensus 317 liTtr~~~-v~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 386 (967)
|.||.... +...+ .....+.++..+.++..+++..++..... ..... ..++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 55666542 22111 22346889999999999999987643221 11122 34566677664 5445444
No 211
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00044 Score=74.01 Aligned_cols=180 Identities=15% Similarity=0.112 Sum_probs=99.3
Q ss_pred CCCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 175 DESEIFGREDEKNDLVNRLICEGS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
.=.++.|-++.+++|.+.+.-+-. -.-..++-|.++|++|.|||.||+.+++. ....| +.|..+.-.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s 220 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ 220 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc
Confidence 335688999888888877642100 01234577999999999999999999985 22222 3444332111
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhccCcceEeecCCCCCC--------h--h----hHHHHHhhhcCC--
Q 048084 248 EFRIAKAIIEALTDSASNFGEFQSLMQRIQK-HVARKKLLLVLDDVWNEN--------F--Y----KWEQFNNCLKNC-- 310 (967)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlvlDdv~~~~--------~--~----~~~~l~~~l~~~-- 310 (967)
. -..+.+..++.+-. .-...+.+|++|+++... . . ....+...+...
T Consensus 221 --------------k--~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 --------------K--YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp --------------S--STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred --------------c--ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 0 00111222222222 223568999999996421 0 0 122233333322
Q ss_pred CCCcEEEEecCChh-HHhhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 311 LHGSKILITTRKEA-IARIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 311 ~~gs~iliTtr~~~-v~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
..+..||.||.... +...+ .....+.++.-+.++..++|+.+...... ....+ ...|++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 23445555665532 22111 23568899998999999999877643221 11222 456777777754
No 212
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.76 E-value=6.9e-06 Score=79.61 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=71.8
Q ss_pred ccchhhhccCCcceEEEeccc-CcccccccccccccccccCCCCcEEEccCCCCccc-----cchHHhccCCCCEEecCC
Q 048084 583 VILPQLFDKLICLRALKLEVR-GWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEK-----LPETLCELYNLERLNVSG 656 (967)
Q Consensus 583 ~~~~~~~~~l~~L~~L~L~~~-~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~-----lp~~~~~l~~L~~L~L~~ 656 (967)
..+...+...+.|++|+|+++ .+.. .....+...+...++|++|+|++|. +.. +...+...++|++|+|++
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~--~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPV--PTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCH--HHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCH--HHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcC
Confidence 345666888999999999933 3322 2233456667778999999999998 764 455667788999999999
Q ss_pred CCCCcc-----cCccccccccccEEec--CCC
Q 048084 657 CRNLRE-----LPQGIGKLRKLMYLYN--DRT 681 (967)
Q Consensus 657 ~~~l~~-----lp~~l~~l~~L~~L~l--~~~ 681 (967)
|. ++. +...+...++|++|++ ++|
T Consensus 103 N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 103 NF-ISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp SC-CCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred Cc-CCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 98 543 4566778889999999 777
No 213
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.76 E-value=0.00016 Score=79.31 Aligned_cols=91 Identities=16% Similarity=0.075 Sum_probs=58.7
Q ss_pred hhccCCCCCCcEEEEeecCCCCCcccccCCCCchhhHHHHhhhCCCCCCCCeEEEeeeCCCCCCCCCchhhcccccceeE
Q 048084 744 AELEKKKNLFKLGLHFCHSRDGDEEQAGRRENEEDEDERLLEALGPPSNLKELRIDEYGGRRNVVPINWIMSLTNLRDLS 823 (967)
Q Consensus 744 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~ 823 (967)
..+..+..|+.+.+..+- .. -....+..+.+|+.+.+... ... ++...|..+.+|+.+.
T Consensus 234 ~~f~~~~~L~~i~lp~~v-~~-----------------I~~~aF~~~~~l~~i~l~~~-i~~--i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKNV-TS-----------------IGSFLLQNCTALKTLNFYAK-VKT--VPYLLCSGCSNLTKVV 292 (379)
T ss_dssp TTTTTCSSCCEEEECTTC-CE-----------------ECTTTTTTCTTCCEEEECCC-CSE--ECTTTTTTCTTCCEEE
T ss_pred ccccCCccceEEEcCCCc-cE-----------------eCccccceeehhcccccccc-cee--cccccccccccccccc
Confidence 345677788888775441 00 01134567788999998643 333 4356778899999999
Q ss_pred ecCccCCCCCCC--CCCCCCccceeeccccCceEeCc
Q 048084 824 LIMWRNREHLPP--LGKLPSLEDLKIQGMQSVKRVGN 858 (967)
Q Consensus 824 L~~~~~~~~l~~--l~~l~~L~~L~L~~c~~l~~~~~ 858 (967)
+.++. .+.++. +.++.+|+.+.|.. +++.++.
T Consensus 293 l~~~~-i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~ 326 (379)
T 4h09_A 293 MDNSA-IETLEPRVFMDCVKLSSVTLPT--ALKTIQV 326 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECT
T ss_pred ccccc-cceehhhhhcCCCCCCEEEcCc--cccEEHH
Confidence 98763 333333 78889999998853 3555543
No 214
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.76 E-value=0.00015 Score=76.97 Aligned_cols=136 Identities=12% Similarity=0.191 Sum_probs=75.4
Q ss_pred ccccchhhHHHHHHHHhcCC---CCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 178 EIFGREDEKNDLVNRLICEG---SKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~---~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
.++|.+..++.+...+.... .........+.|+|++|+|||++|+.+++.. ...-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccccc-cHHH
Confidence 47899999988888886431 0011224689999999999999999998852 1111234566665433221 1111
Q ss_pred HHHHhccCCC--CCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecC
Q 048084 255 IIEALTDSAS--NFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTR 321 (967)
Q Consensus 255 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr 321 (967)
+ ++.... .......+...+. ....-++++|+++.........+...+.... ....+|.||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 221111 1111112222222 2334699999997766555666666654321 2344677776
Q ss_pred C
Q 048084 322 K 322 (967)
Q Consensus 322 ~ 322 (967)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 215
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.75 E-value=5.8e-05 Score=91.78 Aligned_cols=155 Identities=14% Similarity=0.194 Sum_probs=82.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc---cC--CceEEEEecCCCCHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK---YF--DERIWVCVSDPFDEFR 250 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~f--~~~~wv~~~~~~~~~~ 250 (967)
-..++||+++++++.+.|... ....+.|+|++|+|||++|+.+++...... .. ..+++++++....
T Consensus 169 ld~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred CcccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---
Confidence 346899999999999999643 224578999999999999998887521100 11 1233443322100
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHHHh-c-cCcceEeecCCCCCC--------hhhHHHHHhhhcCCCCCcEEEEec
Q 048084 251 IAKAIIEALTDSASNFGEFQSLMQRIQKHV-A-RKKLLLVLDDVWNEN--------FYKWEQFNNCLKNCLHGSKILITT 320 (967)
Q Consensus 251 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~~r~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iliTt 320 (967)
. .....+.++....+...+ . +++.+|++|+++... .+....+...+.. .+..+|.+|
T Consensus 240 ----------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at 306 (854)
T 1qvr_A 240 ----------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEE
T ss_pred ----------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEec
Confidence 0 000112233333333333 2 367899999996532 1111224444443 233455555
Q ss_pred CChhHHh-----hh-CCcceeecCCCChhhHHHHHHHH
Q 048084 321 RKEAIAR-----IM-GSIDIISINVLSEIECWSVFELL 352 (967)
Q Consensus 321 r~~~v~~-----~~-~~~~~~~l~~l~~~~~~~l~~~~ 352 (967)
....... .+ .....+.+++.+.++..+++...
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 5433211 11 12346899999999999999754
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.74 E-value=0.00011 Score=82.63 Aligned_cols=147 Identities=13% Similarity=0.123 Sum_probs=79.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc---cCCc--eEEEEecCCCCHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK---YFDE--RIWVCVSDPFDEFRI 251 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~f~~--~~wv~~~~~~~~~~~ 251 (967)
..++||+++++++.+.+... ...-+.|+|++|+|||++|+.+++...-.. .... ++.++++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-------
Confidence 45999999999999999643 234568999999999999998887521111 0111 22222220
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHHh----
Q 048084 252 AKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIAR---- 327 (967)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~---- 327 (967)
...+ ...... ...+...-..++.+|++|.- . +....+...+.. ...++|.+|.......
T Consensus 247 ------~~~g--~~e~~~---~~~~~~~~~~~~~iLfiD~~--~--~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 247 ------KYRG--EFEDRL---KKVMDEIRQAGNIILFIDAA--I--DASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred ------cccc--hHHHHH---HHHHHHHHhcCCeEEEEeCc--h--hHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 0000 001112 22222333356789999921 1 222224333332 2345666555443111
Q ss_pred ---hhCCcceeecCCCChhhHHHHHHHHh
Q 048084 328 ---IMGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 328 ---~~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
.......+.+++.+.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11123479999999999999998754
No 217
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.70 E-value=4.3e-05 Score=75.37 Aligned_cols=119 Identities=19% Similarity=0.167 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCC
Q 048084 184 DEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSA 263 (967)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 263 (967)
+.++.+.+++..... ....+.+.|+|++|+|||+||+.+++.. ......++|+++. ++...+......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 355556666654321 1122689999999999999999999852 2333456676543 334443332211
Q ss_pred CCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHH--HH-hhhcCC-CCCcEEEEecCC
Q 048084 264 SNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQ--FN-NCLKNC-LHGSKILITTRK 322 (967)
Q Consensus 264 ~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~--l~-~~l~~~-~~gs~iliTtr~ 322 (967)
.........+. . .-+|||||++......|.. +. ..+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 12233333222 2 3499999996543222221 11 122111 134568888874
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00045 Score=75.18 Aligned_cols=180 Identities=16% Similarity=0.146 Sum_probs=93.2
Q ss_pred CCCCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF 246 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 246 (967)
..-.++.|-++..++|.+.+..+-. -+-..++-+.++|++|+|||+||+.+++. .... .+.|..+.-.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~---~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAA---FIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCE---EEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---eEEEecchhh
Confidence 3445788999888888877642110 01234678999999999999999999985 2222 2344433211
Q ss_pred CHHHHHHHHHHHhccCCCCCCChHHHH-HHHHHHhccCcceEeecCCCC---------C-Chh----hHHHHHhhhcC--
Q 048084 247 DEFRIAKAIIEALTDSASNFGEFQSLM-QRIQKHVARKKLLLVLDDVWN---------E-NFY----KWEQFNNCLKN-- 309 (967)
Q Consensus 247 ~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~r~LlvlDdv~~---------~-~~~----~~~~l~~~l~~-- 309 (967)
+ ....+.+..+ ..+...-...+.++++|+++. . ... ....+...+..
T Consensus 244 ~----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 244 H----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp C----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred c----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 1 0001111111 122222235688999999841 0 001 12233333332
Q ss_pred CCCCcEEEEecCChh-HHhhh---C-CcceeecCCCCh-hhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCC
Q 048084 310 CLHGSKILITTRKEA-IARIM---G-SIDIISINVLSE-IECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGL 379 (967)
Q Consensus 310 ~~~gs~iliTtr~~~-v~~~~---~-~~~~~~l~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (967)
...+..||.||.... +...+ + ....+.++.++. ++..++|..+...... ....+ ...|++.+.|+
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-APEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-CTTCC----HHHHHHHTTTC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHHCCCC
Confidence 234445666666532 22111 1 234678876654 5555667665533221 11222 34667777664
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00063 Score=74.16 Aligned_cols=180 Identities=17% Similarity=0.159 Sum_probs=99.8
Q ss_pred CCCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 175 DESEIFGREDEKNDLVNRLICEGS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
.-.++.|-++.+++|.+.+.-+-. ..-..++-|.++|++|.|||+||+.+++. .... .+.+..+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhcc
Confidence 345688998888888777642100 01234678999999999999999999985 2222 23444332211
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHHH-HHhccCcceEeecCCCCCC----------hh----hHHHHHhhhcCC--
Q 048084 248 EFRIAKAIIEALTDSASNFGEFQSLMQRIQ-KHVARKKLLLVLDDVWNEN----------FY----KWEQFNNCLKNC-- 310 (967)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~r~LlvlDdv~~~~----------~~----~~~~l~~~l~~~-- 310 (967)
. -..+.+..++.+. ..-...+.+|++|+++... .. ....+...+...
T Consensus 254 --------------k--~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 --------------K--YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp --------------S--SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred --------------c--cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 0 0011112222222 2224568999999996310 00 122333334322
Q ss_pred CCCcEEEEecCChhH-Hhhh---C-CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 311 LHGSKILITTRKEAI-ARIM---G-SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 311 ~~gs~iliTtr~~~v-~~~~---~-~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
..+..||.||..... ...+ + ....+.++.-+.++..++|+.+...... ....+ ...|++.+.|+-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 234567777765432 2221 1 2447888888888888999877644321 11222 356777777753
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.62 E-value=0.00045 Score=73.25 Aligned_cols=153 Identities=13% Similarity=0.151 Sum_probs=83.9
Q ss_pred CccccchhhHHHHHHHHhcC--C-C-----CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC-
Q 048084 177 SEIFGREDEKNDLVNRLICE--G-S-----KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD- 247 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~--~-~-----~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~- 247 (967)
..++|+++.++.+...+... . . ........+.|+|++|+|||++|+.+++.. .. ..+.++++...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l--~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA--NA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEcchhcccC
Confidence 45899999999998887541 0 0 000124568899999999999999998752 11 234455443211
Q ss_pred ------HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhh------------HHHHHhhhcC
Q 048084 248 ------EFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYK------------WEQFNNCLKN 309 (967)
Q Consensus 248 ------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~------------~~~l~~~l~~ 309 (967)
....+.++.... .. .+.. .+++.+|++|+++...... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~----~~---------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSA----GG---------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTT----TT---------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHh----hH---------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 111122221111 00 0111 1236799999996543221 3444444443
Q ss_pred C----------CCCcEEEEecC----Ch-----hHHhhhCCcceeecCCCChhhHHHHHHH
Q 048084 310 C----------LHGSKILITTR----KE-----AIARIMGSIDIISINVLSEIECWSVFEL 351 (967)
Q Consensus 310 ~----------~~gs~iliTtr----~~-----~v~~~~~~~~~~~l~~l~~~~~~~l~~~ 351 (967)
. ..+..+|.|+. .. .+...+ ...+.+++++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12445555542 21 122211 24689999999999888874
No 221
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.0011 Score=71.90 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=96.9
Q ss_pred CccccchhhHHHHHHHHhcC---CC----CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 177 SEIFGREDEKNDLVNRLICE---GS----KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~---~~----~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
.++.|-++..++|.+.+.-+ +. -.-..++-|.++|++|.|||.||+.+++. .... .+.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHhhc--
Confidence 46889998888888765321 00 01235678999999999999999999985 2222 23444332111
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHH-HHHhccCcceEeecCCCCCC--------h--h----hHHHHHhhhcCC--CC
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRI-QKHVARKKLLLVLDDVWNEN--------F--Y----KWEQFNNCLKNC--LH 312 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~~r~LlvlDdv~~~~--------~--~----~~~~l~~~l~~~--~~ 312 (967)
. -..+.+..++.+ ...-...+.+|++|+++... . . ....+...+... ..
T Consensus 282 ------------k--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 ------------K--YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------C--SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------c--cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 0 001111222222 22224568999999986321 0 0 111222233322 23
Q ss_pred CcEEEEecCChh-HHhhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 313 GSKILITTRKEA-IARIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 313 gs~iliTtr~~~-v~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
+..||.||.... +...+ .....+.++.-+.++..++|+.++..... ...-+ ...|++.+.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIR----WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCC----HHHHHHHCCCCC
Confidence 444555665432 22111 23568889988999999999877643221 11122 356777787753
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.60 E-value=0.002 Score=66.01 Aligned_cols=187 Identities=11% Similarity=0.062 Sum_probs=94.9
Q ss_pred CCCccccchhhHHHHHHHHhc---CCC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 175 DESEIFGREDEKNDLVNRLIC---EGS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~---~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
.-.+++|.+..++++.+.+.. ... -.....+-+.|+|++|+||||+|+.+++. .... .+.++.+.-.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~- 83 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE- 83 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH-
Confidence 345689998877777665421 100 00112345889999999999999999875 2211 23343222110
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC----------h----hhHHHHHhhhcC--CCC
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN----------F----YKWEQFNNCLKN--CLH 312 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~----------~----~~~~~l~~~l~~--~~~ 312 (967)
. ............+.......+.++++|+++... . .....+...+.. ...
T Consensus 84 -------------~-~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 -------------M-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------------S-CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------------H-hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 0 001112222333333334456799999983210 0 111222222322 123
Q ss_pred CcEEEEecCChh-HHhhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCC-ChhHHHHH
Q 048084 313 GSKILITTRKEA-IARIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKG-LPLAAKTI 386 (967)
Q Consensus 313 gs~iliTtr~~~-v~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 386 (967)
+..||.||.... +.... .....+.++..+.++..+++..+..... ...... ...++..+.| .+--|..+
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHHHH
Confidence 445666666543 21211 1134677888888888888877653321 111111 3346667777 56544433
No 223
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.59 E-value=0.00042 Score=77.61 Aligned_cols=97 Identities=11% Similarity=0.095 Sum_probs=59.5
Q ss_pred ceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEec----------C----ChhH-HhhhCCcceeecCCCChhhHHHHH
Q 048084 285 LLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITT----------R----KEAI-ARIMGSIDIISINVLSEIECWSVF 349 (967)
Q Consensus 285 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTt----------r----~~~v-~~~~~~~~~~~l~~l~~~~~~~l~ 349 (967)
-++++|+++....+....+...+...... .+|+.| . ...+ .........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 49999999887767777787777654444 344343 2 1011 112233446799999999999999
Q ss_pred HHHhcCCCCCccchhHHHHHHHHHHHc-CCChhHHHHH
Q 048084 350 ELLAFSGKSMEERENLEKIGREIVGKC-KGLPLAAKTI 386 (967)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plai~~~ 386 (967)
...+....... ..+....|++.+ +|.|.....+
T Consensus 376 ~~~~~~~~~~~----~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGINI----SEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCCB----CHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCCC----CHHHHHHHHHHccCCCHHHHHHH
Confidence 87753222111 123456777777 7887654444
No 224
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.58 E-value=2.4e-05 Score=79.59 Aligned_cols=81 Identities=26% Similarity=0.269 Sum_probs=60.5
Q ss_pred ccCCCCcEEEccCCCCccccc---hHHhccCCCCEEecCCCCCCcccCccccccc--cccEEecCCCcccccccc-----
Q 048084 620 EKLLHLKYLNLFCQREIEKLP---ETLCELYNLERLNVSGCRNLRELPQGIGKLR--KLMYLYNDRTESLRYLPV----- 689 (967)
Q Consensus 620 ~~l~~L~~L~Ls~~~~i~~lp---~~~~~l~~L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~l~~~~~~~~~p~----- 689 (967)
.++++|+.|+|++|. +..++ ..+..+++|++|+|++|. ++.+ ..+..+. +|++|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 468999999999999 77654 667799999999999998 7666 3455555 999999999965544441
Q ss_pred --CCCCCCCCCcCCce
Q 048084 690 --GIEELIRLRGVTKF 703 (967)
Q Consensus 690 --~~~~l~~L~~L~~~ 703 (967)
.+..+++|+.|+..
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 24556666666543
No 225
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.57 E-value=0.00077 Score=72.05 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=96.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
-..++|.+..++.+...+..... .......++|+|++|+||||||+.+++.. ...| ......-....
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~---~~~sg~~~~~~------- 90 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASEL--QTNI---HVTSGPVLVKQ------- 90 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHH--TCCE---EEEETTTCCSH-------
T ss_pred HHHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEechHhcCH-------
Confidence 35688998888887776643200 01234679999999999999999999852 1111 11111110111
Q ss_pred HHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC------------------CCcEEE
Q 048084 256 IEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL------------------HGSKIL 317 (967)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~il 317 (967)
.++...+ ..+ .++-++++|+++.......+.+...+.... ....++
T Consensus 91 --------------~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 91 --------------GDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp --------------HHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred --------------HHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 1111111 111 234577888886543323333433222110 011222
Q ss_pred -EecCChhHHhhhC--CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHH
Q 048084 318 -ITTRKEAIARIMG--SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIA 387 (967)
Q Consensus 318 -iTtr~~~v~~~~~--~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (967)
.|++...+...+. ..-.+.+++.+.++-.+++.+.+...... ...+.+..|++++.|.|-.+..+.
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~----~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE----IEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHhcCCChHHHHHHH
Confidence 3444333222111 12357899999999999998876432211 123457889999999997654443
No 226
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.52 E-value=8e-05 Score=68.84 Aligned_cols=87 Identities=15% Similarity=0.058 Sum_probs=51.9
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARK 283 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 283 (967)
...++|+|+.|+|||||++.++...... . ..++|+........ .+..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g-~~~~~~~~~~~~~~------------------------------~~~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-G-KNAAYIDAASMPLT------------------------------DAAFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-T-CCEEEEETTTSCCC------------------------------GGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-C-CcEEEEcHHHhhHH------------------------------HHHhC
Confidence 3589999999999999999998853221 1 12667765442221 01234
Q ss_pred cceEeecCCCCCChhhHHHHHhhhcCC-CCCc-EEEEecCC
Q 048084 284 KLLLVLDDVWNENFYKWEQFNNCLKNC-LHGS-KILITTRK 322 (967)
Q Consensus 284 r~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iliTtr~ 322 (967)
.-++|+||+.......-+.+...+... ..|. .||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 668999999765433323343333211 1233 48888884
No 227
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.48 E-value=0.00062 Score=81.96 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=87.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc----cCCceEEE-EecCCCCHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK----YFDERIWV-CVSDPFDEFRI 251 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv-~~~~~~~~~~~ 251 (967)
..++||+.+++++.+.|... ...-+.|+|++|+|||++|+.+++...... .....+|. +.+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 46899999999999999643 335678999999999999998887421111 11222221 11110
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCC--------Chhh-HHHHHhhhcCCCCCcEEEEecC
Q 048084 252 AKAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNE--------NFYK-WEQFNNCLKNCLHGSKILITTR 321 (967)
Q Consensus 252 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~--------~~~~-~~~l~~~l~~~~~gs~iliTtr 321 (967)
+.. .......++....+.+.+ ..++.+|++|+++.. ...+ ...+...+. ..+..+|.+|.
T Consensus 254 -------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_dssp --------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEEC
T ss_pred -------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeC
Confidence 000 111223343333343333 345789999999753 1111 112222222 23456666665
Q ss_pred ChhHHhhh-------CCcceeecCCCChhhHHHHHHHHh
Q 048084 322 KEAIARIM-------GSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 322 ~~~v~~~~-------~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
........ .....+.+++.+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 44322111 112368899999999999887654
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00052 Score=74.72 Aligned_cols=179 Identities=15% Similarity=0.148 Sum_probs=96.8
Q ss_pred CCCccccchhhHHHHHHHHhcC---CC----CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 175 DESEIFGREDEKNDLVNRLICE---GS----KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~---~~----~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
.-.++.|-++..++|.+.+..+ +. ..-..++-|.++|++|.|||.||+.+++. .... .+.+..+.-.+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~~ 253 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQLVQ 253 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhhhhh
Confidence 3456889999888888765321 00 01234678999999999999999999985 2222 23343332110
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHHHH-HhccCcceEeecCCCCC-------Ch---hh----HHHHHhhhcCC--
Q 048084 248 EFRIAKAIIEALTDSASNFGEFQSLMQRIQK-HVARKKLLLVLDDVWNE-------NF---YK----WEQFNNCLKNC-- 310 (967)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~r~LlvlDdv~~~-------~~---~~----~~~l~~~l~~~-- 310 (967)
. ...+.+..++.+.. .-...+.+|++|+++.. .. .. ...+...+...
T Consensus 254 --------------~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 254 --------------M--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp --------------S--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred --------------c--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 0 00111122222222 22345899999998420 00 01 11233333322
Q ss_pred CCCcEEEEecCChhH-Hhhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCC
Q 048084 311 LHGSKILITTRKEAI-ARIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGL 379 (967)
Q Consensus 311 ~~gs~iliTtr~~~v-~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (967)
..+..||.||..... ...+ .....+.++.-+.++..++|+.+...... ...-+ ...|++.+.|+
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 234456657665432 2222 12457888888999989999876543221 11122 35677777764
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.45 E-value=8.7e-05 Score=76.91 Aligned_cols=160 Identities=14% Similarity=0.096 Sum_probs=82.7
Q ss_pred CCCccccchhhHHHHHHHHhcCCCC------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSK------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
.-.+++|.++.++.+.+.+..-... .....+.+.|+|++|+|||+||+.+++. ....| +.+..+.-.+
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~- 82 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPF---FSMGGSSFIE- 82 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCC---CCCCSCTTTT-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEechHHHHH-
Confidence 3456999998888888766410000 0012234889999999999999999885 22222 1122211100
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChh---------------hHHHHHhhhcCC---
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFY---------------KWEQFNNCLKNC--- 310 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~---------------~~~~l~~~l~~~--- 310 (967)
..... ....... .+......++.+|++|+++..... ....+...+...
T Consensus 83 ---------~~~~~--~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 83 ---------MFVGL--GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp ---------SCSSS--CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred ---------hhcch--HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 00000 0011111 122222345789999999542110 111222222211
Q ss_pred CCCcEEEEecCChhHH-hh-h---CCcceeecCCCChhhHHHHHHHHhc
Q 048084 311 LHGSKILITTRKEAIA-RI-M---GSIDIISINVLSEIECWSVFELLAF 354 (967)
Q Consensus 311 ~~gs~iliTtr~~~v~-~~-~---~~~~~~~l~~l~~~~~~~l~~~~~~ 354 (967)
.....||.||...... .. . .....+.++..+.++..+++...+.
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 1224566676654321 11 1 1234688889999999999987764
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.41 E-value=0.00045 Score=82.97 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=80.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccc---cCCceEEEEecCCCCHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKK---YFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..+|||+++++++.+.+... ...-+.++|++|+|||++|+.+++...-.. .....-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 46999999999999999643 224578999999999999998887521110 111111222111
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHHhh-----
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIARI----- 328 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~----- 328 (967)
+....+ .-...+...+......++.+|++|.. . +....+...+.. ...++|.||........
T Consensus 245 ------g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 ------GTKYRG-EFEDRLKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred ------cccccc-hHHHHHHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccH
Confidence 000000 00011222333333467889999922 1 111223333332 34566666655442111
Q ss_pred --hCCcceeecCCCChhhHHHHHHHHh
Q 048084 329 --MGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 329 --~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
......+.++..+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1123579999999999999998654
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.41 E-value=0.00021 Score=85.93 Aligned_cols=155 Identities=14% Similarity=0.220 Sum_probs=90.1
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSK---EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..++|.+..++.+...+...... .......+.++|++|+|||++|+.+++. ....-...+.++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccc---
Confidence 46899999999998888643210 1122347999999999999999999875 212223455666554221100
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCC-----------CCCcEEEEecCC
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNC-----------LHGSKILITTRK 322 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iliTtr~ 322 (967)
.....+...++ ....-+|+||+++.........+...+..+ .....||+||..
T Consensus 566 -------------~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 566 -------------TSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -------------CC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -------------cccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 00111111121 123458999999877666666666666542 134578888873
Q ss_pred h-----hH----Hhh-----hCC-cceeecCCCChhhHHHHHHHH
Q 048084 323 E-----AI----ARI-----MGS-IDIISINVLSEIECWSVFELL 352 (967)
Q Consensus 323 ~-----~v----~~~-----~~~-~~~~~l~~l~~~~~~~l~~~~ 352 (967)
. .+ ... ... ...+.+++++.++..+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 1 11 111 111 247889999998888877654
No 232
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.37 E-value=0.0029 Score=70.09 Aligned_cols=180 Identities=16% Similarity=0.099 Sum_probs=96.8
Q ss_pred CCccccchhhHHHHHHHHhcCCC------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGS------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
-.+++|.++.++++.+.+..-.. -....++-|.|+|++|+|||+||+.+++.. ... .+.++++.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCC---eeeCCHHHHHHH-
Confidence 35689998877777666432110 001123458899999999999999999852 211 234443322110
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCCh--------------hhHHHHHhhhcC--CCCC
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENF--------------YKWEQFNNCLKN--CLHG 313 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 313 (967)
+ ...........+.......+.+|++|+++.... .....+...+.. ...+
T Consensus 89 ---------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 ---------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ---------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ---------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 000111222333444455688999999954210 112233333321 1235
Q ss_pred cEEEEecCChhHHh-h-hC---CcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 314 SKILITTRKEAIAR-I-MG---SIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 314 s~iliTtr~~~v~~-~-~~---~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
..||.||....... . .. ....+.++..+.++-.+++..++..... ....+ ...+++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 56666776653321 1 11 2337888888888888888877643221 11112 345778888877
No 233
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.00084 Score=72.06 Aligned_cols=180 Identities=18% Similarity=0.129 Sum_probs=96.9
Q ss_pred CCCCccccchhhHHHHHHHHhcC---CC----CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC
Q 048084 174 IDESEIFGREDEKNDLVNRLICE---GS----KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF 246 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~---~~----~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 246 (967)
..-.++.|-++..++|.+.+.-+ +. ..-..++-|.++|++|.|||.||+.+++. ....| +.++.+.-.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~ 253 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELI 253 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhh
Confidence 33456889988888887766321 10 01234678999999999999999999986 22222 333332211
Q ss_pred CHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCCC-----------h---hhHHHHHhhhcC--
Q 048084 247 DEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNEN-----------F---YKWEQFNNCLKN-- 309 (967)
Q Consensus 247 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~~-----------~---~~~~~l~~~l~~-- 309 (967)
+ ....+.+..++.+.... ...+.+|++|+++... . .....+...+..
T Consensus 254 s----------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 254 Q----------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp C----------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred h----------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 0 00011122222222222 3568999999885310 0 011223333322
Q ss_pred CCCCcEEEEecCChhH-Hhhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCC
Q 048084 310 CLHGSKILITTRKEAI-ARIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGL 379 (967)
Q Consensus 310 ~~~gs~iliTtr~~~v-~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (967)
...+..||.||..... ...+ .....+.++.-+.++..++|+.+...... ....+ ...|++.+.|+
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVN----LETLVTTKDDL 387 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCC----HHHHHHHCCSC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 2234455566655432 2222 11346888888888889999877643221 11222 34667777665
No 234
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.28 E-value=0.0011 Score=69.22 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.0
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999985
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.15 E-value=0.0017 Score=76.36 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=96.9
Q ss_pred CccccchhhHHHHHHHHhc---CCC----CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 177 SEIFGREDEKNDLVNRLIC---EGS----KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~---~~~----~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
.++.|-++.+++|.+.+.- .+. -.-..++-|.++|++|+|||+||+.+++. ...+ .+.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH-----
Confidence 4578888888888877532 110 01234678999999999999999999986 3222 23443221
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCC-------hh----hHHHHHhhhcCC--CCCcEE
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNEN-------FY----KWEQFNNCLKNC--LHGSKI 316 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~-------~~----~~~~l~~~l~~~--~~gs~i 316 (967)
+. .... ......+...+.......+.+|++|+++... .+ ...++...+... ..+..|
T Consensus 274 -l~--------sk~~-gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -IM--------SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -HH--------SSCT-THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -hh--------cccc-hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 11 0000 0111122223333334668999999985311 01 112233333221 123345
Q ss_pred EEecCCh-hHHhhh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 317 LITTRKE-AIARIM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 317 liTtr~~-~v~~~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
|.||... .+...+ .....++++.-+.++-.++++.+...... ....+ ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 5555543 222222 12457889988999999999876533211 11222 456777787764
No 236
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.11 E-value=0.0023 Score=68.44 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=86.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
..++|+++.++.+...+... ..+.++|++|+|||+||+.+.+. .... ...+.+.......++....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g~~- 92 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIGTM- 92 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHEEE-
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCCce-
Confidence 35889999999998888642 35889999999999999999874 2222 2334443333333221110
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhccC---cceEeecCCCCCChhhHHHHHhhhcCC-----------CCCcEEEEecCC
Q 048084 257 EALTDSASNFGEFQSLMQRIQKHVARK---KLLLVLDDVWNENFYKWEQFNNCLKNC-----------LHGSKILITTRK 322 (967)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~~---r~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iliTtr~ 322 (967)
.... ..... .+... ..++++|+++.........+...+... .....|+.|+..
T Consensus 93 ---~~~~-~~~~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 93 ---IYNQ-HKGNF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp ---EEET-TTTEE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred ---eecC-CCCce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 0000 00000 00111 258999999776555445555444321 224455556552
Q ss_pred hh------HHh-hhCC-cceeecCCCChhhHHHHHHHHhcC
Q 048084 323 EA------IAR-IMGS-IDIISINVLSEIECWSVFELLAFS 355 (967)
Q Consensus 323 ~~------v~~-~~~~-~~~~~l~~l~~~~~~~l~~~~~~~ 355 (967)
.. +.. .... ...+.+++.+.++-.+++......
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 21 111 1122 225889999999999999887643
No 237
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.95 E-value=0.0027 Score=63.16 Aligned_cols=86 Identities=22% Similarity=0.197 Sum_probs=52.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhc-----------c-CCCCCCChH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALT-----------D-SASNFGEFQ 270 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----------~-~~~~~~~~~ 270 (967)
...++.|+|.+|+||||||..++. ..-..++|++.....+...+.+ +.+..+ . ......+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 446899999999999999988886 1224678888776555554443 332221 1 111112223
Q ss_pred HHHHHHHHHhccCcceEeecCCCC
Q 048084 271 SLMQRIQKHVARKKLLLVLDDVWN 294 (967)
Q Consensus 271 ~~~~~l~~~l~~~r~LlvlDdv~~ 294 (967)
+....++..+..+.-++|+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344445555444577999998854
No 238
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.92 E-value=0.0022 Score=77.92 Aligned_cols=136 Identities=12% Similarity=0.197 Sum_probs=73.5
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHH
Q 048084 178 EIFGREDEKNDLVNRLICEGS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKA 254 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (967)
.++|.+..++.+...+..... ..+.....+.|+|++|+|||++|+.+.+... ..-...+.++++....... ...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~~-~s~ 635 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHA-VSR 635 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSGG-GGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchhH-HHH
Confidence 579999999999888754311 0112336899999999999999999887521 1112334555543322100 000
Q ss_pred HHHHhccC--CCCCCChHHHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecC
Q 048084 255 IIEALTDS--ASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTR 321 (967)
Q Consensus 255 i~~~l~~~--~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr 321 (967)
+ ++.. ..+......+...++. ...-+|+||++..........+...+..+. .+..||+||.
T Consensus 636 l---~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn 709 (854)
T 1qvr_A 636 L---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSN 709 (854)
T ss_dssp C-----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECC
T ss_pred H---cCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecC
Confidence 0 0000 0000011112222221 234589999998776666666777766431 2445777777
Q ss_pred C
Q 048084 322 K 322 (967)
Q Consensus 322 ~ 322 (967)
.
T Consensus 710 ~ 710 (854)
T 1qvr_A 710 L 710 (854)
T ss_dssp T
T ss_pred c
Confidence 4
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.91 E-value=0.0084 Score=68.35 Aligned_cols=162 Identities=20% Similarity=0.196 Sum_probs=78.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
.+++|-++..+.+.+.+.-..-........+.|+|++|+||||||+.++... ...| ..+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhHHH
Confidence 4578888877777655431110011245689999999999999999998752 2222 2233332222111111110
Q ss_pred HHhccCCCCCCChHHHHHHHHHHhccCcceEeecCCCCCChh----hHHHHHhhhcCCC---------------CCcEEE
Q 048084 257 EALTDSASNFGEFQSLMQRIQKHVARKKLLLVLDDVWNENFY----KWEQFNNCLKNCL---------------HGSKIL 317 (967)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~l~~~l~~~r~LlvlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~il 317 (967)
...+. ........+.. .....-++++|+++..... ....+...+.... ....+|
T Consensus 156 ~~ig~------~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11100 00111111221 1223348889998754322 1223444442211 234566
Q ss_pred EecCChh-----HHhhhCCcceeecCCCChhhHHHHHHHHh
Q 048084 318 ITTRKEA-----IARIMGSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 318 iTtr~~~-----v~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
.||.... +...+ ..+.+++++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 6666432 22222 478999999998888887653
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.90 E-value=0.0012 Score=79.31 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=73.1
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGS---KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAK 253 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (967)
..++|.++.++.+...+..... ........+.++|++|+|||++|+.+.+.. . ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 3588999999888887753211 011234579999999999999999998752 1 2344555544221100
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecC
Q 048084 254 AIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNENFYKWEQFNNCLKNCL-----------HGSKILITTR 321 (967)
Q Consensus 254 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iliTtr 321 (967)
...+.+..+.....++ ...+...+ ....-+++||+++....+....+...+..+. ....||.||.
T Consensus 530 --~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp --CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred --HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 0000011111000000 01122222 2345799999998766665666666665321 2345777776
Q ss_pred C
Q 048084 322 K 322 (967)
Q Consensus 322 ~ 322 (967)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 241
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.89 E-value=0.014 Score=60.04 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=81.0
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH
Q 048084 177 SEIFGREDEKNDLVNRLICEGSK-------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF 249 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (967)
.++.|-++..++|.+.+..+-.. .-.-.+-++|+|++|+||||||+.++..... ..+++....-.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhh
Confidence 45778888877777654211000 0011223999999999999999999885221 23444433211100
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCCCh-----------hhHHHHHhhhcCCC--CCcE
Q 048084 250 RIAKAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNENF-----------YKWEQFNNCLKNCL--HGSK 315 (967)
Q Consensus 250 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~~~-----------~~~~~l~~~l~~~~--~gs~ 315 (967)
..+....+..+-+.. ...+.++++|+++.... .....+...+..+. ...-
T Consensus 85 ----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 85 ----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp ----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred ----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 000011111222221 23477999999864210 11122333333322 2334
Q ss_pred EEEecCChhHHh-hh----CCcceeecCCCChhhHHHHHHHHhc
Q 048084 316 ILITTRKEAIAR-IM----GSIDIISINVLSEIECWSVFELLAF 354 (967)
Q Consensus 316 iliTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~ 354 (967)
++.+|....+.. .. .....+.++..+.++..++++....
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 445665544322 11 2245788999999999999987753
No 242
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.85 E-value=0.00074 Score=69.61 Aligned_cols=69 Identities=19% Similarity=0.368 Sum_probs=47.0
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEe--cCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCV--SDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
.+++.|+|++|+|||+||.+++.. .-..++|++. .+..+. . ..+.++....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~---------------~-~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG---------------Y-NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT---------------C-BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh---------------h-hcCHHHHHHHHHHHHh
Confidence 467889999999999999888864 1224677877 332110 0 0345666666666666
Q ss_pred cCcceEeecCCCC
Q 048084 282 RKKLLLVLDDVWN 294 (967)
Q Consensus 282 ~~r~LlvlDdv~~ 294 (967)
..+ ++|+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 556 999999954
No 243
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.85 E-value=0.00068 Score=71.24 Aligned_cols=57 Identities=18% Similarity=0.047 Sum_probs=36.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEe
Q 048084 182 REDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCV 242 (967)
Q Consensus 182 R~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 242 (967)
+...++.+.+++...+. .....+.|+|++|+|||+||+.+++.... ..-..++++.+
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 34455556666654321 12467899999999999999999885220 22234566654
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.76 E-value=0.021 Score=63.75 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=93.8
Q ss_pred CCCCccccchhhHHHHHHHHhcCCC------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGS------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
..-.+++|.++.++++.+....-.. -.-.-.+-+.|+|++|+|||+||+.++... . ...+.++.+.-..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~---~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--T---CCEEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C---CCEEEEehhHHHH
Confidence 3445789998877776665432100 000112348999999999999999999852 2 2234444432110
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc----CcceEeecCCCCCC----------hhhH----HHHHhhhcC
Q 048084 248 EFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR----KKLLLVLDDVWNEN----------FYKW----EQFNNCLKN 309 (967)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----~r~LlvlDdv~~~~----------~~~~----~~l~~~l~~ 309 (967)
.........+...++. .+.++++|+++... ...+ ..+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0011122233333322 35799999994321 1112 233333332
Q ss_pred CC--CCcEEEEecCChhHHh-hh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 310 CL--HGSKILITTRKEAIAR-IM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 310 ~~--~gs~iliTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
.. .+..++.||....... .+ .....+.++..+.++-.+++..++.... ...... ...|++.+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhcCCCC
Confidence 22 3344555666554322 11 1234788888898888898876653211 111111 345777777765
No 245
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.70 E-value=0.024 Score=60.64 Aligned_cols=159 Identities=11% Similarity=-0.061 Sum_probs=100.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHH-Hhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQK-HVA 281 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~ 281 (967)
-.++..++|+.|.||++.++.+.+... ...|+....+.+....+.. ++...+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWN---------------------AIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHH---------------------HHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHH---------------------HHHHHhcCcCCc
Confidence 346899999999999999988876421 2234321122222223333 33322222 123
Q ss_pred cCcceEeecCCCC-CChhhHHHHHhhhcCCCCCcEEEEecCC-------hhHHhhh-CCcceeecCCCChhhHHHHHHHH
Q 048084 282 RKKLLLVLDDVWN-ENFYKWEQFNNCLKNCLHGSKILITTRK-------EAIARIM-GSIDIISINVLSEIECWSVFELL 352 (967)
Q Consensus 282 ~~r~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iliTtr~-------~~v~~~~-~~~~~~~l~~l~~~~~~~l~~~~ 352 (967)
+++-++|+|+++. .....++.+...+.....++.+|+++.. ..+...+ .....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5577889999976 5556778888888766667777766543 2343333 33568899999999999888877
Q ss_pred hcCCCCCccchhHHHHHHHHHHHcCCChhHHHHHH
Q 048084 353 AFSGKSMEERENLEKIGREIVGKCKGLPLAAKTIA 387 (967)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (967)
+...+...+ .+.+..+++.++|....+...-
T Consensus 155 ~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~el 185 (343)
T 1jr3_D 155 AKQLNLELD----DAANQVLCYCYEGNLLALAQAL 185 (343)
T ss_dssp HHHTTCEEC----HHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhchHHHHHHHHH
Confidence 644332211 3457789999999888776543
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.66 E-value=0.01 Score=60.57 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=87.5
Q ss_pred CCCccccchhhHHHHHHHHhcCCCC------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSK------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
.-.+++|.++...++.+....-... .-.-.+-+.|+|++|+||||||+.++... . ...+.+...
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~----- 83 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----- 83 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH-----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHH-----
Confidence 3456889887666665543211000 00112238999999999999999999752 2 223333321
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCC----------Chhh----HHHHHhhhcCCC--
Q 048084 249 FRIAKAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNE----------NFYK----WEQFNNCLKNCL-- 311 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~----------~~~~----~~~l~~~l~~~~-- 311 (967)
.+.. .. ..........+-+.. ...+.++++|+++.. .... ...+...+..+.
T Consensus 84 -~~~~----~~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 84 -DFVE----MF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp -HHHH----SC------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred -HHHH----HH------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 1110 00 000111112222222 234679999998321 0011 122333333222
Q ss_pred CCcEEEEecCChhHHh-hh----CCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 312 HGSKILITTRKEAIAR-IM----GSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 312 ~gs~iliTtr~~~v~~-~~----~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
....++.||....... .. .....+.++..+.++-.++++..+.+.. ...... ...+++.+.|.-
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC-CCcccC----HHHHHHHcCCCC
Confidence 2223444555544322 11 2244788888898888888887653221 111111 335666666643
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.64 E-value=0.0063 Score=72.86 Aligned_cols=158 Identities=15% Similarity=0.145 Sum_probs=85.8
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCH
Q 048084 176 ESEIFGREDEKNDLVNRLICEGS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDE 248 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (967)
-.+++|.++.+++|.+++..+-. -.-.....|.|+|++|+||||||+.++.. ....| +.++...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH----
Confidence 34689999999999888753100 00124467999999999999999999885 22222 3343211
Q ss_pred HHHHHHHHHHhccCCCCCCChH-HHHHHHHHHhccCcceEeecCCCCCC-----------hhhHHHHHhhhcCC--CCCc
Q 048084 249 FRIAKAIIEALTDSASNFGEFQ-SLMQRIQKHVARKKLLLVLDDVWNEN-----------FYKWEQFNNCLKNC--LHGS 314 (967)
Q Consensus 249 ~~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~~~r~LlvlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs 314 (967)
+ .... ..... .+...+.......+.++++|+++... ......+...+... ....
T Consensus 274 --l--------~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 274 --I--------MSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp --H--------SSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred --h--------hhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 1 0000 01111 12222333334457899999984211 01112233333322 2344
Q ss_pred EEEEecCChh-HHhhhC----CcceeecCCCChhhHHHHHHHHhc
Q 048084 315 KILITTRKEA-IARIMG----SIDIISINVLSEIECWSVFELLAF 354 (967)
Q Consensus 315 ~iliTtr~~~-v~~~~~----~~~~~~l~~l~~~~~~~l~~~~~~ 354 (967)
.+|.||.... +...+. ....+.+...+.++..+++...+.
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 5555665532 222111 124577888888888888886653
No 248
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.55 E-value=0.041 Score=56.80 Aligned_cols=181 Identities=14% Similarity=0.120 Sum_probs=88.9
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCC------CCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 174 IDESEIFGREDEKNDLVNRLICEGSK------EQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 174 ~~~~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
..-.+++|.++..+++.+....-... .-.-.+-+.|+|++|+||||||+.++... . ...+.+...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~---- 107 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS---- 107 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH----
Confidence 34457899887776666544221000 00112238999999999999999999752 2 223444321
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHH-HHHHHHhccCcceEeecCCCCC----------ChhhH----HHHHhhhcCCCC
Q 048084 248 EFRIAKAIIEALTDSASNFGEFQSLM-QRIQKHVARKKLLLVLDDVWNE----------NFYKW----EQFNNCLKNCLH 312 (967)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~r~LlvlDdv~~~----------~~~~~----~~l~~~l~~~~~ 312 (967)
.+.. .. ........ ..++..-...+.++++|+++.. ....+ ..+...+..+..
T Consensus 108 --~~~~----~~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 --DFVE----MF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp --HHHH----ST------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred --HHHH----HH------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 1110 00 00011111 1222222234679999998421 00111 122222332222
Q ss_pred --CcEEEEecCChhHHh-h----hCCcceeecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHcCCCh
Q 048084 313 --GSKILITTRKEAIAR-I----MGSIDIISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKCKGLP 380 (967)
Q Consensus 313 --gs~iliTtr~~~v~~-~----~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (967)
...++.||....... . ......+.++..+.++-.+++...+.... ...... ...+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC-CCcccC----HHHHHHHcCCCC
Confidence 223444555443221 1 12345788998899988898887653221 111111 335667776654
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.53 E-value=0.0019 Score=63.67 Aligned_cols=112 Identities=13% Similarity=-0.024 Sum_probs=62.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCC--CCChHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASN--FGEFQSLMQRIQKHV 280 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 280 (967)
...++.|+|..|+||||++..+... ...+-..++.+..... .. ....+++.++..... .....++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4579999999999999999777664 2222223444433321 11 112333333322111 123344555555444
Q ss_pred ccCc-ceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 281 ARKK-LLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 281 ~~~r-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
.+.+ -++|+|.++....+..+.+.. +.+ .|..||+|-+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLD 125 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCS
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecc
Confidence 3344 499999997654444444443 333 26789999884
No 250
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.43 E-value=0.073 Score=57.70 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.3
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+.++|++|+|||++|+.+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999874
No 251
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.16 E-value=0.011 Score=62.73 Aligned_cols=85 Identities=22% Similarity=0.216 Sum_probs=55.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSA-----SNFGEFQSLMQRIQ 277 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 277 (967)
...++.|+|++|+||||||.+++.... ..-..++|++.....+.. .++.++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999988887522 222357899877666543 344454321 12245566666666
Q ss_pred HHhc-cCcceEeecCCCC
Q 048084 278 KHVA-RKKLLLVLDDVWN 294 (967)
Q Consensus 278 ~~l~-~~r~LlvlDdv~~ 294 (967)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5554 4566899998854
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.11 E-value=0.016 Score=58.18 Aligned_cols=115 Identities=18% Similarity=0.091 Sum_probs=62.0
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCC-------------------
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSAS------------------- 264 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------- 264 (967)
..+++|+|++|+|||||++.++.... ..-..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 46899999999999999988885422 1123466766543 3444443332 3321100
Q ss_pred ----CCCChHHHHHHHHHHhc-cCcc--eEeecCCCCC---ChhhHHHHHhhhcCC--CCCcEEEEecCCh
Q 048084 265 ----NFGEFQSLMQRIQKHVA-RKKL--LLVLDDVWNE---NFYKWEQFNNCLKNC--LHGSKILITTRKE 323 (967)
Q Consensus 265 ----~~~~~~~~~~~l~~~l~-~~r~--LlvlDdv~~~---~~~~~~~l~~~l~~~--~~gs~iliTtr~~ 323 (967)
...+.+++...+.+.+. .+.- ++|+|..... +......+...+... ..|.-||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11144555555555443 2444 9999998521 222233333333211 2466788888764
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.87 E-value=0.024 Score=60.47 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=38.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCcccc----ccCCceEEEEecCCCCHHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVK----KYFDERIWVCVSDPFDEFRIAKAIIEAL 259 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 259 (967)
...++.|+|.+|+||||||..++...... +.-..++|++....++...+.+ +++.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 55799999999999999998877642111 1234688999887767665543 34444
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.83 E-value=0.018 Score=61.55 Aligned_cols=85 Identities=20% Similarity=0.143 Sum_probs=55.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSAS-----NFGEFQSLMQRIQ 277 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (967)
...++.|+|.+|+||||||.+++... ...-..++|++.....+.. .++.++.... ...+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34689999999999999998777642 2222468999988766543 2344443211 1235566666666
Q ss_pred HHhc-cCcceEeecCCCC
Q 048084 278 KHVA-RKKLLLVLDDVWN 294 (967)
Q Consensus 278 ~~l~-~~r~LlvlDdv~~ 294 (967)
...+ ...-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 6654 3456899998853
No 255
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.73 E-value=0.014 Score=59.03 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=36.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccc----cCCceEEEEecCCCCHHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKK----YFDERIWVCVSDPFDEFRIAKAIIEAL 259 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 259 (967)
...++.|+|++|+|||||+..++....... .-..++|++....+....+. ++++.+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 82 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERY 82 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHc
Confidence 346999999999999999988876311111 23578899877655544433 334444
No 256
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.66 E-value=0.022 Score=60.31 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=38.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccc----cCCceEEEEecCCCCHHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKK----YFDERIWVCVSDPFDEFRIAKAIIEALT 260 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 260 (967)
...++.|+|.+|+|||+||.+++....... .-..++|++....++...+.+ +++.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 346899999999999999988775421111 124688998887766665543 344443
No 257
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.62 E-value=0.024 Score=58.15 Aligned_cols=85 Identities=8% Similarity=0.054 Sum_probs=53.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHH-HHHHHHH
Q 048084 206 IISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSAS-----NFGEFQSL-MQRIQKH 279 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~ 279 (967)
++.|.|++|+||||||.+++........=..++||+..+.++.. .++.++.+.. ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999997776542211012467899988777653 2566654321 12345555 4433332
Q ss_pred --h-ccCcceEeecCCCCC
Q 048084 280 --V-ARKKLLLVLDDVWNE 295 (967)
Q Consensus 280 --l-~~~r~LlvlDdv~~~ 295 (967)
+ .++.-++|+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 2 345779999998543
No 258
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.58 E-value=0.012 Score=57.39 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=34.5
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 181 GREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 181 GR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|++.++.|.+.+.... .....+|+|.|..|+||||+++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35667788888886532 235689999999999999999988763
No 259
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.49 E-value=0.041 Score=57.45 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=27.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCC-ceEEEEec
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFD-ERIWVCVS 243 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~ 243 (967)
...+++|.|.+|+|||||++.++..... .-. .++|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc
Confidence 3469999999999999999888875221 112 46676543
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.47 E-value=0.081 Score=50.00 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=18.7
Q ss_pred EEEEEEccCCCcHHHHHHHH
Q 048084 205 RIISLVGMGGIGKTTLAQFA 224 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v 224 (967)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999998
No 261
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.43 E-value=0.017 Score=61.11 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=39.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccc---------cC-----CceEEEEecCCCCHHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKK---------YF-----DERIWVCVSDPFDEFRIAKAIIEALT 260 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~ 260 (967)
...++.|+|.+|+|||+||.+++....... .. ..++|++....++...+.+ +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457999999999999999987775311110 11 4688998887776666654 344443
No 262
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.42 E-value=0.027 Score=59.94 Aligned_cols=85 Identities=19% Similarity=0.144 Sum_probs=54.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSAS-----NFGEFQSLMQRIQ 277 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (967)
...++.|+|.+|+||||||.+++... ...=..++|++.....+.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45789999999999999998887642 2222467899887766543 2344443211 1234556666555
Q ss_pred HHhc-cCcceEeecCCCC
Q 048084 278 KHVA-RKKLLLVLDDVWN 294 (967)
Q Consensus 278 ~~l~-~~r~LlvlDdv~~ 294 (967)
.... .+.-++|+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 5543 3466899998843
No 263
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.36 E-value=0.015 Score=55.52 Aligned_cols=118 Identities=12% Similarity=0.031 Sum_probs=69.1
Q ss_pred cccCCCCccEEEeccC-Cccc-hhccchhhhccCCcceEEEecccCcccccccccccccccccCCCCcEEEccCCCCccc
Q 048084 561 NVKGLRGLRSLLVESN-EYSW-SRVILPQLFDKLICLRALKLEVRGWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEK 638 (967)
Q Consensus 561 ~~~~~~~Lr~L~l~~~-~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~ 638 (967)
.+.+-+.|+.|+|+++ .+.. ....+-..+..-..|+.|+|+.+.+.. .....+...+..-+.|++|+|++|. |..
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd--~ga~alA~aL~~N~tL~~L~L~~N~-Ig~ 112 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD--SEARGLIELIETSPSLRVLNVESNF-LTP 112 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH--HHHTTHHHHHHHCSSCCEEECCSSB-CCH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh--HHHHHHHHHHhcCCccCeEecCCCc-CCH
Confidence 3455677888888875 4321 111234446667788888888433322 2223444555566778888888887 653
Q ss_pred -----cchHHhccCCCCEEecCCCCC--Cc-----ccCccccccccccEEecCCC
Q 048084 639 -----LPETLCELYNLERLNVSGCRN--LR-----ELPQGIGKLRKLMYLYNDRT 681 (967)
Q Consensus 639 -----lp~~~~~l~~L~~L~L~~~~~--l~-----~lp~~l~~l~~L~~L~l~~~ 681 (967)
+-..+..-+.|++|+|++|.. ++ .+...+..-+.|+.|+++.|
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 223344556688888876531 22 12233555667777777665
No 264
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.34 E-value=0.12 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999875
No 265
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.33 E-value=0.01 Score=56.39 Aligned_cols=117 Identities=18% Similarity=0.078 Sum_probs=58.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC---CCHHHHHHHHHHHhc--cCCC--CC-------CChH
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP---FDEFRIAKAIIEALT--DSAS--NF-------GEFQ 270 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~--~~~~--~~-------~~~~ 270 (967)
..|.|++-.|.||||.|--..-. ..++=..|.++..... .....++..+.-.+. .... .. ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 45666677779999999444432 2222224555544331 222333333310000 0000 00 0112
Q ss_pred HHHHHHHHHhccCcc-eEeecCCCC---CChhhHHHHHhhhcCCCCCcEEEEecCCh
Q 048084 271 SLMQRIQKHVARKKL-LLVLDDVWN---ENFYKWEQFNNCLKNCLHGSKILITTRKE 323 (967)
Q Consensus 271 ~~~~~l~~~l~~~r~-LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iliTtr~~ 323 (967)
......++.+.+.+| |||||++-. -..-..+++...+..-.....||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 233334445544444 999999821 12234456667776555677899999985
No 266
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.32 E-value=0.026 Score=60.15 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=52.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSAS-----NFGEFQSLMQRIQ 277 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (967)
..+++.|.|.+|+||||||.+++.... ..-..++|++.....+.. .++.++.... .....+++...++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 446899999999999999988776422 222368899987766643 2344433211 1123455555555
Q ss_pred HHhc-cCcceEeecCCC
Q 048084 278 KHVA-RKKLLLVLDDVW 293 (967)
Q Consensus 278 ~~l~-~~r~LlvlDdv~ 293 (967)
...+ .+.-++|+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4432 445588999874
No 267
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.26 E-value=0.18 Score=49.95 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999875
No 268
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.12 E-value=0.036 Score=57.80 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=35.5
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 179 IFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 179 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
++|-.+.+..+...+..... ...+.+|+|.|..|+||||+|+.+..-
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666677777766665432 346789999999999999999888763
No 269
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.03 E-value=0.044 Score=56.82 Aligned_cols=87 Identities=16% Similarity=0.092 Sum_probs=46.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC-CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP-FDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA 281 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 281 (967)
...+++|+|.+|+||||++..++........ ..+.++..... ....+.+....+..+.......+..++...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 4579999999999999999888764221111 24556665432 122223333333232221111233344444442 3
Q ss_pred cCcceEeecCC
Q 048084 282 RKKLLLVLDDV 292 (967)
Q Consensus 282 ~~r~LlvlDdv 292 (967)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34568889954
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.95 E-value=0.018 Score=56.52 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 185 EKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
-+++|.+.+... .....+|+|+|+.|+|||||++.+...
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445555555432 235689999999999999999988874
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.94 E-value=0.15 Score=53.48 Aligned_cols=53 Identities=15% Similarity=0.091 Sum_probs=38.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEAL 259 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 259 (967)
...++.|.|.+|+||||+|..++......+ ..++|++.. .+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 446899999999999999988776422222 568888766 46777777776553
No 272
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.78 E-value=0.017 Score=64.41 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++|+++.++.+...+... .-|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4789999999988887643 36889999999999999999985
No 273
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.75 E-value=0.041 Score=61.48 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=54.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHH-----
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKH----- 279 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----- 279 (967)
+.+.|.|.+|+|||+++..+.......+ ...++.+ ..... ....+.+.++... .... ..+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~-~~~il~~-a~T~~----Aa~~l~~~~~~~~---~T~h---~~~~~~~~~~~ 113 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTG-ETGIILA-APTHA----AKKILSKLSGKEA---STIH---SILKINPVTYE 113 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT-CCCEEEE-ESSHH----HHHHHHHHHSSCE---EEHH---HHHTEEEEECS
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC-CceEEEe-cCcHH----HHHHHHhhhccch---hhHH---HHhccCccccc
Confidence 3899999999999999988877522221 1233333 22211 1122222221110 0000 000000
Q ss_pred -----------hccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 280 -----------VARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 280 -----------l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
...+.-++|+|++...+...+..+...++ .+.++++.--.
T Consensus 114 ~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~ 164 (459)
T 3upu_A 114 ENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDN 164 (459)
T ss_dssp SCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECT
T ss_pred ccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCH
Confidence 00123589999998776666666776665 45667776543
No 274
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.68 E-value=0.031 Score=57.85 Aligned_cols=42 Identities=29% Similarity=0.374 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 185 EKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+++++..+..... ......+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444443322 2345689999999999999999998763
No 275
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.68 E-value=0.14 Score=60.24 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=79.6
Q ss_pred CCCccccchhhHHHHHHHHhcCCC-------CCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 175 DESEIFGREDEKNDLVNRLICEGS-------KEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
.-.++.|-++..++|.+.+.-+-. ......+-+.++|++|.|||.+|+.+++.. .. -++.++
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~-----~f~~v~---- 543 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QA-----NFISIK---- 543 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TC-----EEEECC----
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CC-----ceEEec----
Confidence 344677888888888776643211 012235668899999999999999999862 22 233332
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh-ccCcceEeecCCCCCC--h------------hhHHHHHhhhcCCC-
Q 048084 248 EFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV-ARKKLLLVLDDVWNEN--F------------YKWEQFNNCLKNCL- 311 (967)
Q Consensus 248 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~r~LlvlDdv~~~~--~------------~~~~~l~~~l~~~~- 311 (967)
..+++ ....+ .. +..++.+-+.. +..+.+|+||+++... + ....++...+....
T Consensus 544 ~~~l~--------s~~vG-es-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 544 GPELL--------TMWFG-ES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HHHHH--------TTTCS-SC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred cchhh--------ccccc-hH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 12211 11111 12 33333333333 4568999999985311 0 01223344444322
Q ss_pred CCcEEEE-ecCCh-hHHhhh----CCcceeecCCCChhhHHHHHHHHh
Q 048084 312 HGSKILI-TTRKE-AIARIM----GSIDIISINVLSEIECWSVFELLA 353 (967)
Q Consensus 312 ~gs~ili-Ttr~~-~v~~~~----~~~~~~~l~~l~~~~~~~l~~~~~ 353 (967)
....++| ||... .+...+ .....+.++.-+.++-.++|+.+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2223343 44432 221111 234577787777777778887654
No 276
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.61 E-value=0.076 Score=55.78 Aligned_cols=53 Identities=11% Similarity=0.007 Sum_probs=37.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEAL 259 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 259 (967)
...++.|.|.+|+||||+|..++..... .=..++|++.. .+...+...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 3468999999999999999888765222 22357777654 46777777776554
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.54 E-value=0.018 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998874
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.50 E-value=0.022 Score=54.98 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=22.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999874
No 279
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.45 E-value=0.029 Score=57.93 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|.|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999888774
No 280
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.41 E-value=0.0047 Score=59.18 Aligned_cols=22 Identities=23% Similarity=0.086 Sum_probs=18.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999955554
No 281
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.36 E-value=0.028 Score=60.67 Aligned_cols=50 Identities=30% Similarity=0.341 Sum_probs=36.3
Q ss_pred ccccchhhHHHHHHHHhcC------C---CCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 178 EIFGREDEKNDLVNRLICE------G---SKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~------~---~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3689999888888877210 0 001123467899999999999999999885
No 282
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.29 E-value=0.035 Score=56.33 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 184 DEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 184 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++...+..... ......+|.|+|++|+||||+|+.+...
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344555555554332 2345689999999999999999998864
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.24 E-value=0.024 Score=54.05 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999887
No 284
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.23 E-value=0.19 Score=48.88 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=56.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCC----------CCCChHHHHH
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSAS----------NFGEFQSLMQ 274 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~~~~ 274 (967)
-.|.+.|.||+||||+|..+..... ...+ .+.++.+......... .+...+..... ...+.+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~-~V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l~~--- 79 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGV-RVMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDLDA--- 79 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTC-CEEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCC-CEEEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccHHH---
Confidence 4588999999999999877766422 2223 3455555543333211 12222221100 0112222
Q ss_pred HHHHHhccCcceEeecCCCCC------ChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 275 RIQKHVARKKLLLVLDDVWNE------NFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 275 ~l~~~l~~~r~LlvlDdv~~~------~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
.+..+.=++|+|++... ....|..+...++. |..|+.|+.-
T Consensus 80 ----~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s---gidVitT~Nl 126 (228)
T 2r8r_A 80 ----LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA---GIDVYTTVNV 126 (228)
T ss_dssp ----HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT---TCEEEEEEEG
T ss_pred ----HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC---CCCEEEEccc
Confidence 12235679999987532 12256676665554 5568888773
No 285
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.23 E-value=0.093 Score=56.74 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=36.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccc----cccCCceEEEEecCCCCHHHHHHHHHHHhc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDV----KKYFDERIWVCVSDPFDEFRIAKAIIEALT 260 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 260 (967)
...++.|+|++|+|||||+..++-.... ...-..++|++....+....+ ..+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 4469999999999999999866521111 112346889987765555443 33555544
No 286
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.23 E-value=0.021 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+|+|.|++|+||||+|+.+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.22 E-value=0.023 Score=55.31 Aligned_cols=24 Identities=38% Similarity=0.310 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++|+|+|++|+||||+|+.+.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 288
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.21 E-value=0.05 Score=48.43 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=17.4
Q ss_pred CCcEEEccCCCCccccch-HHhccCCCCEEecCCCC
Q 048084 624 HLKYLNLFCQREIEKLPE-TLCELYNLERLNVSGCR 658 (967)
Q Consensus 624 ~L~~L~Ls~~~~i~~lp~-~~~~l~~L~~L~L~~~~ 658 (967)
+|++|+|++|. |+.+|. .|..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 45555555555 555543 23445555555555554
No 289
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.17 E-value=0.29 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.4
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 290
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.16 E-value=0.16 Score=52.66 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=48.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHH--HHHHHHHHHhccC---CCCCCChHHH-HHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEF--RIAKAIIEALTDS---ASNFGEFQSL-MQRI 276 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~~-~~~l 276 (967)
...+++|+|++|+||||++..++.... ..-..+.++.... +... +-+...++..+.. .....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 568999999999999999988886422 2222355555443 2222 1223344443321 1111222222 2344
Q ss_pred HHHhccCcceEeecCCCC
Q 048084 277 QKHVARKKLLLVLDDVWN 294 (967)
Q Consensus 277 ~~~l~~~r~LlvlDdv~~ 294 (967)
...+..+.-++|+|-...
T Consensus 180 ~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 180 AHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCc
Confidence 444555556888997643
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.15 E-value=0.1 Score=52.99 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=57.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhcc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVAR 282 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 282 (967)
...+++|+|+.|+|||||++.+... ....+.+.+++.-..... +.+.....+...... .+...+...+.+.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~---~~~~~~~~v~q~~~g-l~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEY---VFKHKKSIVNQREVG-EDTKSFADALRAALRE 97 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCS---CCCCSSSEEEEEEBT-TTBSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCccee---ecCCcceeeeHHHhC-CCHHHHHHHHHHHHhh
Confidence 3479999999999999999888774 222223344332211000 000000000000000 0012234556666666
Q ss_pred CcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHH
Q 048084 283 KKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIA 326 (967)
Q Consensus 283 ~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~ 326 (967)
++=++++|+..+ ......+.... ..|.-|++||......
T Consensus 98 ~p~illlDEp~D--~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 98 DPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred CCCEEEeCCCCC--HHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 778999999863 23333333222 2355688888765543
No 292
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.10 E-value=0.03 Score=54.49 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|+|+|++|+||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999875
No 293
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.04 E-value=0.089 Score=56.03 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=31.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccC----CceEEEEecCCCCH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYF----DERIWVCVSDPFDE 248 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~ 248 (967)
...++.|+|++|+|||||+..++......... ..++|++....+..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~ 179 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 179 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCH
Confidence 55899999999999999998887642111111 24589987665433
No 294
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.03 E-value=0.028 Score=53.60 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=21.5
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998864
No 295
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.97 E-value=0.045 Score=52.29 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=62.0
Q ss_pred cchhhhccCCcceEEEeccc-CcccccccccccccccccCCCCcEEEccCCCCccc-----cchHHhccCCCCEEecCCC
Q 048084 584 ILPQLFDKLICLRALKLEVR-GWRSCENYIKEIPTNIEKLLHLKYLNLFCQREIEK-----LPETLCELYNLERLNVSGC 657 (967)
Q Consensus 584 ~~~~~~~~l~~L~~L~L~~~-~~~~c~~~~~~lp~~i~~l~~L~~L~Ls~~~~i~~-----lp~~~~~l~~L~~L~L~~~ 657 (967)
.+...+.+-+.|+.|+|+.+ .+.. .....+-..+..-+.|+.|+|++|. +.. +...+..-+.|++|+|++|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd--~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSK--ERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCH--HHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHhcCCCccEEECCCCCCCCH--HHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCC
Confidence 34555677788999999821 2111 1122345556677889999999998 663 4455667788999999998
Q ss_pred CCCcc-----cCccccccccccEEecCCC
Q 048084 658 RNLRE-----LPQGIGKLRKLMYLYNDRT 681 (967)
Q Consensus 658 ~~l~~-----lp~~l~~l~~L~~L~l~~~ 681 (967)
. ++. +-..+..-+.|++|+|++|
T Consensus 109 ~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 109 F-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp B-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred c-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 8 532 2234555667888888765
No 296
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.96 E-value=0.12 Score=53.61 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4468999999999999999998874
No 297
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.95 E-value=0.023 Score=61.15 Aligned_cols=47 Identities=28% Similarity=0.229 Sum_probs=34.0
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 175 DESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 175 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.-..++|.+...+.+...+.... ..-+.|+|++|+|||++|+.+++.
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 34568999886666554443221 123899999999999999999874
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.84 E-value=0.039 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+||||+++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998763
No 299
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.82 E-value=0.15 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3468999999999999999999874
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.80 E-value=0.024 Score=53.66 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+|+|+|++|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998874
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.80 E-value=0.034 Score=53.65 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998864
No 302
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.79 E-value=0.03 Score=53.70 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.3
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+.|.|+|++|+||||+|+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999874
No 303
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.78 E-value=0.05 Score=54.73 Aligned_cols=41 Identities=27% Similarity=0.258 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 183 EDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+.++........ .....|+|.|++|+||||+|+.+.+.
T Consensus 12 ~~~~~~~~~~~~~~~----~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 12 IDLLNELKRRYACLS----KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp HHHHHHHHHHHHHHT----SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc----CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344445544443322 25678999999999999999998864
No 304
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.74 E-value=0.51 Score=48.47 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999875
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.70 E-value=0.033 Score=54.20 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+||||+++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999998874
No 306
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.67 E-value=0.03 Score=54.64 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.5
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|+|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998874
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.64 E-value=0.036 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999999875
No 308
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.61 E-value=0.033 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=20.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
...+++|+|+.|+|||||++..+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 357999999999999999997543
No 309
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.58 E-value=0.07 Score=55.94 Aligned_cols=46 Identities=22% Similarity=0.183 Sum_probs=32.1
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 180 FGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 180 vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
|+-++-.+++.+.+...-. .+....+.|+|++|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3445556666666643221 234567999999999999999988874
No 310
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.57 E-value=0.041 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
....|+|+|++|+||||+|+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 311
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.50 E-value=0.062 Score=56.59 Aligned_cols=52 Identities=15% Similarity=-0.013 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCc-eEEEEecCC
Q 048084 188 DLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDE-RIWVCVSDP 245 (967)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~ 245 (967)
++++.+..-. ....++|+|.+|+|||||++.+.+... +.+-+. ++++-+++.
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~-~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIA-YNHPDCVLMVLLIDER 215 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHH-HHCTTSEEEEEEESSC
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHh-hcCCCeeEEEEEecCC
Confidence 4555554332 456899999999999999988877421 112222 345666653
No 312
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.47 E-value=0.039 Score=53.85 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.4
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 368999999999999999998863
No 313
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.44 E-value=0.045 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...++|.|.|++|+||||.|+.+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998874
No 314
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.40 E-value=0.039 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+|+|.|++|+||||+|+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998874
No 315
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.40 E-value=0.49 Score=51.44 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+.+|.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999777653
No 316
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.40 E-value=0.093 Score=46.64 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=40.6
Q ss_pred cEEEccCCCCcc--ccchHHhccCCCCEEecCCCCCCcccCcc-ccccccccEEecCCCc
Q 048084 626 KYLNLFCQREIE--KLPETLCELYNLERLNVSGCRNLRELPQG-IGKLRKLMYLYNDRTE 682 (967)
Q Consensus 626 ~~L~Ls~~~~i~--~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 682 (967)
..++.+++. ++ .+|..+ -.+|++|+|++|. ++.+|.+ |..+++|+.|+|++|+
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSC-CCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCC-CccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 367788877 77 777542 2468999999988 8888765 6778899999998885
No 317
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.31 E-value=0.05 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998864
No 318
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.29 E-value=0.036 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999998864
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.28 E-value=0.038 Score=52.71 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++|.|+|++|+||||+|+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3467899999999999999998864
No 320
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.28 E-value=0.037 Score=54.04 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++|+|+|++|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998864
No 321
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.25 E-value=0.045 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998875
No 322
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.24 E-value=0.046 Score=53.66 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988874
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.24 E-value=0.041 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.719 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+|+|.|++|+||||+|+.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998874
No 324
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.23 E-value=0.041 Score=51.70 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=21.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|+|.|++|+||||+|+.+.+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998874
No 325
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.21 E-value=0.047 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.3
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|+|.|++|+||||+|+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.21 E-value=0.053 Score=53.05 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|+|+|++|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998874
No 327
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.18 E-value=0.047 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 328
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.17 E-value=0.051 Score=52.94 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=23.0
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|.|+.|+||||+|+.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35689999999999999999998873
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.13 E-value=0.075 Score=56.55 Aligned_cols=111 Identities=11% Similarity=0.174 Sum_probs=59.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKK 284 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r 284 (967)
.+++|+|+.|+||||+.+.+... ........++ .+.++.... .... ...-.+.............+...|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~--~~~~-~~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFV--HESK-KCLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSC--CCCS-SSEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhh--hhcc-ccceeeeeeccccCCHHHHHHHHhhhCc
Confidence 59999999999999999888764 1111122221 222211100 0000 0000000000111234457788888889
Q ss_pred ceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCChhHH
Q 048084 285 LLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKEAIA 326 (967)
Q Consensus 285 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~ 326 (967)
=++++|+..+ .+.++.+..... .|.-||+|+......
T Consensus 198 dvillDEp~d--~e~~~~~~~~~~---~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEMRD--LETIRLALTAAE---TGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCCCS--HHHHHHHHHHHH---TTCEEEEEESCSSHH
T ss_pred CEEecCCCCC--HHHHHHHHHHHh---cCCEEEEEEccChHH
Confidence 9999999964 344554444432 355688888875544
No 330
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.09 E-value=0.29 Score=53.09 Aligned_cols=24 Identities=38% Similarity=0.318 Sum_probs=21.2
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++++|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999888764
No 331
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.08 E-value=0.048 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|+|.|++|+||||+|+.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998864
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.07 E-value=0.061 Score=51.55 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.9
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|.|++|+||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35578999999999999999998875
No 333
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.03 E-value=0.048 Score=55.21 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
++++|.|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999998874
No 334
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.01 E-value=0.038 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+.|.|.|++|+||||+|+.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 335
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.00 E-value=0.051 Score=51.49 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888865
No 336
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.98 E-value=0.055 Score=56.52 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=28.4
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSD 244 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 244 (967)
++.+||+|+|-|||||||.+..+.-- ....=..|.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 36799999999999999999665543 222222466777664
No 337
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.97 E-value=0.056 Score=52.57 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|.|++|+||||+|+.+.+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998874
No 338
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.97 E-value=0.041 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+.|+|+|++|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999998764
No 339
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.96 E-value=0.29 Score=55.31 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=37.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEAL 259 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 259 (967)
...++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 44689999999999999998877652221 123578887654 5667777765544
No 340
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.95 E-value=0.054 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998874
No 341
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.93 E-value=0.27 Score=56.12 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=53.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhc---
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVA--- 281 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--- 281 (967)
+++.|.|.+|.||||++..+....... ...+.+.+...... ..+.+.++... .. +.+.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa----~~L~e~~~~~a---~T-------ih~ll~~~~ 267 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAA----RRLGEVTGRTA---ST-------VHRLLGYGP 267 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHH----HHHHHHHTSCE---EE-------HHHHTTEET
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHH----HHhHhhhcccH---HH-------HHHHHcCCc
Confidence 689999999999999998887642221 12344444332222 22222222110 00 111110
Q ss_pred ----------cCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecC
Q 048084 282 ----------RKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTR 321 (967)
Q Consensus 282 ----------~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr 321 (967)
.+.-++|+|++...+...+..+...++ .+.++|+.--
T Consensus 268 ~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 268 QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp TEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred chhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 023489999998776666666666555 4667776544
No 342
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.92 E-value=0.24 Score=54.96 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=35.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAII 256 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 256 (967)
...++.|.|.+|+||||||..++...... .-..++|++... +...+...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 34689999999999999998888752221 123577876553 4566666654
No 343
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.90 E-value=0.053 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.593 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999988864
No 344
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.89 E-value=0.35 Score=52.63 Aligned_cols=65 Identities=25% Similarity=0.224 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCC-CCHHHHHHHHHHH
Q 048084 188 DLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDP-FDEFRIAKAIIEA 258 (967)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~ 258 (967)
++++.|..-. +...++|+|.+|+|||+|+..+.+.. .+.+-+.++++-+++. ..+.++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4566665332 45689999999999999998888742 1233456778877764 3455666666654
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.85 E-value=0.055 Score=51.82 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.2
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...|+|.|++|+||||+|+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998863
No 346
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.81 E-value=0.059 Score=52.64 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 347
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.81 E-value=0.042 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999988763
No 348
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.81 E-value=0.38 Score=52.96 Aligned_cols=52 Identities=15% Similarity=0.039 Sum_probs=35.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEA 258 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 258 (967)
...++.|.|.+|+||||+|..++.+.... =..++|++... +..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 44689999999999999998877653222 23577776553 455566655544
No 349
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.79 E-value=0.35 Score=50.69 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=22.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+||||+++.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999888874
No 350
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.78 E-value=0.041 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+|+|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998873
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.77 E-value=0.069 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|+|.|++|+||||+|+.+.+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998874
No 352
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.74 E-value=0.34 Score=53.63 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=37.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEAL 259 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 259 (967)
...++.|.|.+|+||||+|..++...... .-..++|++.. .+...+...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 44689999999999999998877652211 12357787765 35667777766543
No 353
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.71 E-value=0.063 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|+|.|++|+||||+|+.+.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999875
No 354
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.67 E-value=0.083 Score=50.40 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 185 EKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
-+..+..++... +....+.|+|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 355666666422 23457999999999999999888875
No 355
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.67 E-value=0.054 Score=52.82 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999886
No 356
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.66 E-value=0.37 Score=52.37 Aligned_cols=25 Identities=48% Similarity=0.397 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999887764
No 357
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.66 E-value=0.055 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.4
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|+|.|++|+||||+|+.+.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998874
No 358
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.63 E-value=0.039 Score=52.68 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=17.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998764
No 359
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.62 E-value=0.057 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999998874
No 360
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.61 E-value=0.065 Score=54.32 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|.|++|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999988773
No 361
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.60 E-value=0.19 Score=50.71 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=32.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAI 255 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (967)
...++.|.|.+|+|||++|.+++.+. ....-..++|++... +...+.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 34689999999999999997765431 222334567776553 455555544
No 362
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.58 E-value=0.35 Score=51.95 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||.+.+..-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3468999999999999999999864
No 363
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.56 E-value=0.42 Score=49.40 Aligned_cols=87 Identities=17% Similarity=0.059 Sum_probs=46.4
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHH--HHHHHHHHhccCC---CCCCChHHHHH-HHH
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFR--IAKAIIEALTDSA---SNFGEFQSLMQ-RIQ 277 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~---~~~~~~~~~~~-~l~ 277 (967)
..+++|+|.+|+||||++..++.... ..-..+.++..... .... .+....+..+... ....+..++.. .+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~-~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQ-RPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSS-CHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcc-cHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999988887522 22223455554332 2221 1233334433221 11223334432 333
Q ss_pred HHhccCcceEeecCCC
Q 048084 278 KHVARKKLLLVLDDVW 293 (967)
Q Consensus 278 ~~l~~~r~LlvlDdv~ 293 (967)
.....+.=++|+|-..
T Consensus 175 ~~~~~~~D~viiDtpp 190 (295)
T 1ls1_A 175 KARLEARDLILVDTAG 190 (295)
T ss_dssp HHHHHTCCEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 3323445588899773
No 364
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.56 E-value=0.079 Score=48.94 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.++.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4479999999999999999998874
No 365
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.56 E-value=0.058 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998763
No 366
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.54 E-value=0.063 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=21.1
Q ss_pred CEEEEEEccCCCcHHHHHHHHHc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
..+++|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.52 E-value=0.049 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+|+|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998874
No 368
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.48 E-value=0.19 Score=64.71 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=55.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCC-----CCCCChHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSA-----SNFGEFQSLMQRIQ 277 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 277 (967)
..+.+.|+|++|+|||+||.++.... ...=..++|+++.+..+... ++.++.+. ......++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45799999999999999998887752 22223578888887766554 34444221 11223456666666
Q ss_pred HHhc-cCcceEeecCCC
Q 048084 278 KHVA-RKKLLLVLDDVW 293 (967)
Q Consensus 278 ~~l~-~~r~LlvlDdv~ 293 (967)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 557799999983
No 369
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.47 E-value=0.067 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999998874
No 370
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.46 E-value=0.61 Score=50.39 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=33.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++|....++++.+.+..... ... .|.|.|.+|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~-~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AEC-PVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCS-CEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCC-CeEEecCCCcCHHHHHHHHHHh
Confidence 467777777777777654332 123 3589999999999999888764
No 371
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.46 E-value=0.066 Score=49.83 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++++|.|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999888875
No 372
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.45 E-value=0.075 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|.|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 35689999999999999999988874
No 373
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.43 E-value=0.25 Score=52.98 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=33.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 177 SEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++|....+.++.+.+..... ....|.|.|.+|.||+++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHh
Confidence 4578888777777666543221 2234779999999999999988764
No 374
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.36 E-value=0.077 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|+|.|+.|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988763
No 375
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.34 E-value=0.068 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 376
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.29 E-value=0.074 Score=52.33 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999988864
No 377
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.25 E-value=0.081 Score=50.26 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|+|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998874
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.25 E-value=0.076 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|+|+|+.|+||||+|+.+.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999999999998873
No 379
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.20 E-value=0.063 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999998874
No 380
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.18 E-value=0.41 Score=49.47 Aligned_cols=90 Identities=18% Similarity=0.081 Sum_probs=49.2
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC-HHHHHHHHHHHhccC---CCCCCChHHHHHHHHHH
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD-EFRIAKAIIEALTDS---ASNFGEFQSLMQRIQKH 279 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 279 (967)
..+++++|.+|+||||++..++.... ..-..+.+++...... ..+.++...+..+.. .....+..++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57999999999999999988876422 2223456666554322 222333444444322 11123344443333333
Q ss_pred hc-cCcceEeecCCCCC
Q 048084 280 VA-RKKLLLVLDDVWNE 295 (967)
Q Consensus 280 l~-~~r~LlvlDdv~~~ 295 (967)
++ ..-=++|+|-....
T Consensus 176 ~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHTTCSEEEEECCCSC
T ss_pred HHhCCCCEEEEeCCCCc
Confidence 43 33338888876443
No 381
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.17 E-value=0.072 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.3
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...|+|.|++|+||||+|+.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998874
No 382
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.17 E-value=0.29 Score=53.77 Aligned_cols=43 Identities=28% Similarity=0.422 Sum_probs=29.9
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
....+++|+|..|+|||||++.++.... ...+.+++.....+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccc
Confidence 3568999999999999999998887422 223455554444333
No 383
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.17 E-value=0.071 Score=52.30 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|+|.|..|+||||+|+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999874
No 384
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.12 E-value=0.075 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 385
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.12 E-value=0.2 Score=49.76 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccc---cc-cCCceEEEEecCC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDV---KK-YFDERIWVCVSDP 245 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~ 245 (967)
...+++|+|+.|+|||||++.++..... .. .-..++|+.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 4579999999999999999998762111 11 2345788875543
No 386
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.07 E-value=0.15 Score=53.28 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|+|..|+|||||++.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999988873
No 387
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.07 E-value=0.12 Score=56.53 Aligned_cols=51 Identities=22% Similarity=0.192 Sum_probs=32.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC-CHHHHHHHHH
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF-DEFRIAKAII 256 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 256 (967)
+.++|+|.+|+|||||+..+...... ..-+..+++.+++.. ...+++.++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhh
Confidence 46899999999999999988875221 122445666666533 3334444443
No 388
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.06 E-value=0.1 Score=51.95 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=26.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEE
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWV 240 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 240 (967)
...+++|+|+.|+|||||++.+..- .....+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL---DKPTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC---CCCCceEEEE
Confidence 3468999999999999999999874 2223445554
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.03 E-value=0.092 Score=54.09 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHc
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999873
No 390
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.97 E-value=0.077 Score=51.17 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+|+|.|..|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 391
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.97 E-value=0.073 Score=52.93 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.4
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....|+|.|++|+||||+|+.+.+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998864
No 392
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.96 E-value=0.19 Score=52.92 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=55.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhccCc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHVARKK 284 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~r 284 (967)
..++|+|+.|+|||||++.+.... ..-.+.+.+.-......... + +.+..-. + .-......+...+..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~---~~~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI---PKEERIISIEDTEEIVFKHH-K---NYTQLFF-G--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS---CTTSCEEEEESSCCCCCSSC-S---SEEEEEC-B--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---cCCCcEEEECCeeccccccc-h---hEEEEEe-C--CChhHHHHHHHHhhhCC
Confidence 479999999999999999988742 12245555543221110000 0 0000000 0 11233445666777788
Q ss_pred ceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCCh
Q 048084 285 LLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRKE 323 (967)
Q Consensus 285 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~~ 323 (967)
-++++|++... +.++.+. .+..+ ..+ +|+||...
T Consensus 242 ~ilildE~~~~--e~~~~l~-~~~~g-~~t-vi~t~H~~ 275 (330)
T 2pt7_A 242 DRIILGELRSS--EAYDFYN-VLCSG-HKG-TLTTLHAG 275 (330)
T ss_dssp SEEEECCCCST--HHHHHHH-HHHTT-CCC-EEEEEECS
T ss_pred CEEEEcCCChH--HHHHHHH-HHhcC-CCE-EEEEEccc
Confidence 89999998653 3344333 33332 112 55555543
No 393
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.86 E-value=0.091 Score=54.56 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|++|+||||+++.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999888864
No 394
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.85 E-value=0.087 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999875
No 395
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.84 E-value=0.089 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.5
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|+|+|+.|+||||+++.+.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999863
No 396
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.79 E-value=0.073 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998874
No 397
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.75 E-value=0.11 Score=51.64 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 183 EDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 183 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
++..+.+...+.. .....|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444455554432 24688999999999999999888764
No 398
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.74 E-value=0.53 Score=51.45 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=28.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSD 244 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 244 (967)
.+++|.++|.+|+||||++..++.....+. =..+.-|++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecCC
Confidence 568999999999999999977775422220 12455666554
No 399
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.73 E-value=0.12 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+++|+|+.|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999999874
No 400
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.70 E-value=0.34 Score=50.60 Aligned_cols=39 Identities=26% Similarity=0.175 Sum_probs=27.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEec
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVS 243 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 243 (967)
..++++|+|.+|+||||++..++... ...-..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l--~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY--AELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCC
Confidence 46899999999999999998887642 2222235555544
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.70 E-value=0.1 Score=51.18 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+|+|.|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998874
No 402
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.68 E-value=0.87 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999998864
No 403
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.66 E-value=0.086 Score=51.91 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 404
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.61 E-value=0.13 Score=56.14 Aligned_cols=51 Identities=25% Similarity=0.372 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 177 SEIFGREDEKNDLVNRLICE--------GSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 177 ~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++|.++..+.+...+... ........+-+.++|++|+|||++|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45789888888887766321 0000113456899999999999999999875
No 405
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.59 E-value=0.29 Score=53.45 Aligned_cols=99 Identities=20% Similarity=0.142 Sum_probs=60.3
Q ss_pred HHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCC-CHHHHHHHHHHHhccC----
Q 048084 188 DLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPF-DEFRIAKAIIEALTDS---- 262 (967)
Q Consensus 188 ~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---- 262 (967)
++++.|..-. +...++|.|.+|+|||+|+..+.+.. .+.+-+.++|+-+++.. .+.++++++.+.-..+
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l 227 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNI 227 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccc
Confidence 3556665332 45679999999999999998888752 12344677888887653 4556666665431111
Q ss_pred ----------CCCCC-----ChHHHHHHHHHHhc---cCcceEeecCC
Q 048084 263 ----------ASNFG-----EFQSLMQRIQKHVA---RKKLLLVLDDV 292 (967)
Q Consensus 263 ----------~~~~~-----~~~~~~~~l~~~l~---~~r~LlvlDdv 292 (967)
..+.. ......-.+.++++ ++..|+++||+
T Consensus 228 ~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 228 AESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 00111 11122333445553 57999999998
No 406
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.54 E-value=0.13 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999874
No 407
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.48 E-value=0.092 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 408
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.46 E-value=0.094 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|+|.|..|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 409
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.44 E-value=0.16 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999888875
No 410
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.43 E-value=0.11 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHc
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 411
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.42 E-value=0.12 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||++.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999874
No 412
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.37 E-value=0.12 Score=52.63 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.5
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||++.+..-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999999874
No 413
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.36 E-value=1.2 Score=49.52 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=21.1
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...++|+|+|.+|+||||++..++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999877754
No 414
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.34 E-value=0.16 Score=50.88 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4479999999999999999998874
No 415
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.20 E-value=0.14 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.++.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3468999999999999999999874
No 416
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.18 E-value=0.1 Score=60.52 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=37.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 176 ESEIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 176 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
-..++|.+..++.+...+... ..+.|+|++|+||||||+.++..
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred cceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 346899999998888877532 47999999999999999999885
No 417
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.16 E-value=0.15 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999874
No 418
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.16 E-value=0.088 Score=51.90 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.0
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...|+|.|++|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998874
No 419
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.14 E-value=0.22 Score=53.30 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 186 KNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++.+.+.... .+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 445555554322 36789999999999999999887654
No 420
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.14 E-value=0.091 Score=52.76 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+|+|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 421
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.11 E-value=0.19 Score=55.04 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.0
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999998874
No 422
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.09 E-value=0.062 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+|+|.|..|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988774
No 423
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.08 E-value=0.07 Score=50.03 Aligned_cols=23 Identities=39% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
++++|+|..|+|||||++.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999888875
No 424
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.03 E-value=0.11 Score=50.37 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+|.|.|++|+||+|.|+.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998874
No 425
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.96 E-value=0.1 Score=49.86 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999888764
No 426
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.95 E-value=0.16 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||.+.++.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999874
No 427
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.94 E-value=0.13 Score=53.27 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888874
No 428
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.87 E-value=0.11 Score=52.55 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEec
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVS 243 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 243 (967)
...+++|+|+.|+|||||++.++..... ..-..++|+...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 3469999999999999999988742110 122345666543
No 429
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.81 E-value=0.16 Score=51.75 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999874
No 430
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.76 E-value=0.12 Score=51.01 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.5
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+|+|.|++|+||||+|+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998864
No 431
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.75 E-value=0.089 Score=52.47 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=16.5
Q ss_pred CEEEEEEccCCCcHHHHHHHHH-cC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAY-NN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~-~~ 227 (967)
..+++|+|+.|+|||||++.+. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998 53
No 432
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.73 E-value=0.16 Score=52.91 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++|+|+|+.|+||||||..+++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999999985
No 433
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.72 E-value=0.39 Score=52.00 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.1
Q ss_pred CCCCEEEEEEccCCCcHHHHHHHHHc
Q 048084 201 QKGPRIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 201 ~~~~~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
....++..|.|.+|.||||+.+..++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35789999999999999999988875
No 434
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.71 E-value=0.2 Score=49.46 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=29.5
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 181 GREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 181 GR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+.++..+.+.+.+.. ....+|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334455555555532 25689999999999999999888764
No 435
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.69 E-value=0.16 Score=51.00 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||++.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999874
No 436
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.68 E-value=0.18 Score=48.67 Aligned_cols=109 Identities=12% Similarity=-0.002 Sum_probs=51.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCC--CCCChHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSAS--NFGEFQSLMQRIQKHV 280 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 280 (967)
...+..++|..|.||||.|........ ..... ++.+.... +.+.-...+...++.... ...+.++ +.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~k-Vli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~~----~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ-FAKQH-AIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASKD----IFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCC-EEEEECC-------------------CCEEECSSGGG----GGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCE-EEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHHH----HHHHH
Confidence 347899999999999999966555422 12222 33333211 111122234444432211 1111111 11222
Q ss_pred ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 281 ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 281 ~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
.++--+|++|.++--+.+.++.+....+. |..||+|-++
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~~---~~~Vi~~Gl~ 137 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLANR---GYRVIVAGLD 137 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEECS
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhhC---CCEEEEEecc
Confidence 23334999999976544455444443332 6689999885
No 437
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.67 E-value=0.14 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.5
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||++.++.-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 438
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.66 E-value=0.4 Score=61.91 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=57.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHH
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSAS-----NFGEFQSLMQRIQ 277 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 277 (967)
...++.|+|++|+||||||.+++.... ..-..++|++.....+.. .++.++.+.. +..+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 457999999999999999988877522 222468899887766543 1455554321 2345667777666
Q ss_pred HHhc-cCcceEeecCCCC
Q 048084 278 KHVA-RKKLLLVLDDVWN 294 (967)
Q Consensus 278 ~~l~-~~r~LlvlDdv~~ 294 (967)
+..+ .+.-++|+|.+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 5543 4566999998854
No 439
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.64 E-value=0.16 Score=50.73 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 440
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.63 E-value=0.14 Score=48.11 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++++|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999888874
No 441
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.56 E-value=0.18 Score=51.37 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999998874
No 442
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.55 E-value=0.16 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||.+.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 443
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.53 E-value=0.14 Score=51.08 Aligned_cols=25 Identities=32% Similarity=0.202 Sum_probs=21.8
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....|.|.|++|+||||+|+.+.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999874
No 444
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.44 E-value=1.1 Score=60.19 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=0.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHh----
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNFGEFQSLMQRIQKHV---- 280 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 280 (967)
+-|.++|++|+|||++|+.+... ..-...+.++.+...+...+.+.+...+......... .
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~----~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-----------~~~P~ 1332 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN----SSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-----------TLLPK 1332 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS----CSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-----------EEEEB
T ss_pred CeEEEECCCCCCHHHHHHHHHhc----CCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-----------cccCC
Q ss_pred -ccCcceEeecCCCCCChh------hHHHHHhhhcCCC------------CCcEEEEecCChh-------HHhhhCCcce
Q 048084 281 -ARKKLLLVLDDVWNENFY------KWEQFNNCLKNCL------------HGSKILITTRKEA-------IARIMGSIDI 334 (967)
Q Consensus 281 -~~~r~LlvlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~iliTtr~~~-------v~~~~~~~~~ 334 (967)
.+++.++++||+.-...+ ..+.++..+..++ .+..+|-++.... -.........
T Consensus 1333 ~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEE
T ss_pred CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeE
Q ss_pred eecCCCChhhHHHHHHHHhcCCCCCccchhHHHHHHHHHHHc
Q 048084 335 ISINVLSEIECWSVFELLAFSGKSMEERENLEKIGREIVGKC 376 (967)
Q Consensus 335 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 376 (967)
+.++..+.++-..+|.....+.-. ..++...++..|+...
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~l~--~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAIFK--LVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHHTT--SSGGGGGGHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHH
No 445
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.44 E-value=0.13 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998873
No 446
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.39 E-value=0.14 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 68999999999999999998874
No 447
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.35 E-value=0.14 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998874
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.33 E-value=0.13 Score=50.41 Aligned_cols=22 Identities=41% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 449
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.32 E-value=0.16 Score=52.62 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++|+|+|+.|+||||||+.+++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998874
No 450
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.31 E-value=0.16 Score=51.18 Aligned_cols=40 Identities=30% Similarity=0.386 Sum_probs=28.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSD 244 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 244 (967)
...++.|.|.+|+||||||.+++... ...-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 34689999999999999997776542 12224678887554
No 451
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.28 E-value=0.17 Score=51.95 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++|+|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 468999999999999999999875
No 452
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.08 E-value=0.12 Score=50.24 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988764
No 453
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.06 E-value=0.19 Score=51.48 Aligned_cols=25 Identities=36% Similarity=0.297 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..++|+|.|+.|+||||||..+++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4579999999999999999998874
No 454
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.99 E-value=0.19 Score=47.62 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.4
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.+.|.|.|+.|+||||||..+.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999999988875
No 455
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.90 E-value=0.19 Score=53.38 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.5
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999888874
No 456
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.86 E-value=0.17 Score=52.87 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 048084 205 RIISLVGMGGIGKTTLAQFAYN 226 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~ 226 (967)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 457
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.85 E-value=0.41 Score=60.95 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccCCCCC-----CChHHHHHHH
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDSASNF-----GEFQSLMQRI 276 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~l 276 (967)
+..+++.|+|.+|+||||||.+++.. ....=..++|++.....+... ++.++.+.... .+.+++...+
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 381 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHH
Q ss_pred HHHh-ccCcceEeecCC
Q 048084 277 QKHV-ARKKLLLVLDDV 292 (967)
Q Consensus 277 ~~~l-~~~r~LlvlDdv 292 (967)
+... ..+.-++|+|.+
T Consensus 454 ~~lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHhcCCCEEEECCH
No 458
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.78 E-value=1.4 Score=50.31 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=64.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcCcccc-cc-C-C-ceEEEEec--C--CCCHH--------------HHHHHHHHHhccC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNNGDVK-KY-F-D-ERIWVCVS--D--PFDEF--------------RIAKAIIEALTDS 262 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~~~~~-~~-f-~-~~~wv~~~--~--~~~~~--------------~~~~~i~~~l~~~ 262 (967)
.+++|+|+.|+|||||++.++.-.... +. . . .+.++.-. . ..++. ....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999998742211 10 0 0 12222111 0 01121 2223344444432
Q ss_pred C-----CCCCChHHH-HHHHHHHhccCcceEeecCCCCC-ChhhHHHHHhhhcCC--CCCcEEEEecCChhHHhhh
Q 048084 263 A-----SNFGEFQSL-MQRIQKHVARKKLLLVLDDVWNE-NFYKWEQFNNCLKNC--LHGSKILITTRKEAIARIM 329 (967)
Q Consensus 263 ~-----~~~~~~~~~-~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iliTtr~~~v~~~~ 329 (967)
. ...-+-.+. .-.+.+.|..++-++++|+--.. +...-..+...+... ..|.-||++|.+...+..+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 1 112233333 34456677788899999987432 222223333333321 1255588888876655443
No 459
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.77 E-value=0.21 Score=51.15 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||++.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999999874
No 460
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.76 E-value=1.6 Score=43.28 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=54.8
Q ss_pred EEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhcc---C--------CCCC-----CChH
Q 048084 207 ISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTD---S--------ASNF-----GEFQ 270 (967)
Q Consensus 207 v~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~--------~~~~-----~~~~ 270 (967)
+.|+|+.|.|||.+|..+.... . ..++++. . ...+..++.+.+.. . .... ...+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P----~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-P----TLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-S----SHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-C----CHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7889999999999997777541 1 2344442 2 22344444444332 1 0000 1122
Q ss_pred HHHHHHHHHhccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecC
Q 048084 271 SLMQRIQKHVARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTR 321 (967)
Q Consensus 271 ~~~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr 321 (967)
.+..... .+.++--++|+|+++......+..+...++. ..++.+|..
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~---~~~l~LSAT 227 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSIA---PFRLGLTAT 227 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCCC---SEEEEEEES
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhccC---CEEEEEecC
Confidence 2322222 3334456999999987665667776665542 334555544
No 461
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.73 E-value=0.17 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.2
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998875
No 462
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.71 E-value=0.16 Score=48.47 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 463
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.70 E-value=0.2 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998864
No 464
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.69 E-value=0.17 Score=52.26 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4578999999999999999888864
No 465
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.69 E-value=0.098 Score=54.04 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=19.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+..+|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988873
No 466
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.63 E-value=0.19 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999884
No 467
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.51 E-value=0.31 Score=50.95 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=30.4
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFD 247 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (967)
...++|+|+|-||+||||+|..++.... ..=..|+-|++....+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCCCCC
Confidence 4678999999999999999977766422 2222567777765443
No 468
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.50 E-value=1.3 Score=50.94 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999988774
No 469
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.49 E-value=0.18 Score=51.00 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.0
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999874
No 470
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.48 E-value=0.21 Score=50.86 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=22.3
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....++.+.|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999888753
No 471
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.41 E-value=0.22 Score=49.36 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....|+|.|++|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999885
No 472
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.40 E-value=0.19 Score=50.64 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999883
No 473
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.37 E-value=0.31 Score=52.12 Aligned_cols=25 Identities=32% Similarity=0.163 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|++|+|||||++.+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4569999999999999999999863
No 474
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.36 E-value=0.2 Score=50.11 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.7
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|.|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998863
No 475
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.22 E-value=0.13 Score=49.14 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=53.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcCccccccCCceEEEEecCCCCHHHHHHHHHHHhccC--CCCCCChHHHHHHHHHHh
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNNGDVKKYFDERIWVCVSDPFDEFRIAKAIIEALTDS--ASNFGEFQSLMQRIQKHV 280 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l 280 (967)
..++..++|..|.||||.+....+... .......++ .... +.+.-...+...++.. .....+..+ +.+.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~-k~~~--d~r~~~~~i~s~~g~~~~a~~~~~~~~----i~~~~ 78 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVF-KPEI--DNRYSKEDVVSHMGEKEQAVAIKNSRE----ILKYF 78 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEE-EEC---------CEEECTTSCEEECEEESSSTH----HHHHC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEE-Eecc--CccchHHHHHhhcCCceeeEeeCCHHH----HHHHH
Confidence 347999999999999999966665422 122333332 2111 1111111122222211 000011122 22333
Q ss_pred ccCcceEeecCCCCCChhhHHHHHhhhcCCCCCcEEEEecCC
Q 048084 281 ARKKLLLVLDDVWNENFYKWEQFNNCLKNCLHGSKILITTRK 322 (967)
Q Consensus 281 ~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iliTtr~ 322 (967)
.++-=+|++|.++..+.+.++.+....+. |..||+|.++
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~~---~~~Vi~~Gl~ 117 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAES---GRRVICAGLD 117 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEEECS
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEEecc
Confidence 33334999999876544445555544332 6689999885
No 476
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.21 E-value=0.9 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
+++.|.|.+|.||||++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999998776653
No 477
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.19 E-value=0.23 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcC
Q 048084 205 RIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999888765
No 478
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.16 E-value=2.9 Score=47.75 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||.+.+..-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4569999999999999999998864
No 479
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.13 E-value=0.27 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.8
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 468999999999999999999974
No 480
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.08 E-value=0.2 Score=49.84 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.6
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....+|+|.|..|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35579999999999999999988773
No 481
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.97 E-value=0.21 Score=48.21 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.1
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998875
No 482
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.92 E-value=0.2 Score=50.27 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||.+.++.-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999875
No 483
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.74 E-value=1.1 Score=44.38 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=17.1
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 048084 205 RIISLVGMGGIGKTTLAQFAY 225 (967)
Q Consensus 205 ~vv~i~G~~GiGKTtLa~~v~ 225 (967)
+.+.|.|..|+||||+.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 579999999999998774443
No 484
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.71 E-value=0.39 Score=48.11 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 186 KNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 186 ~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+..++... .+....+.++|++|.|||.+|..+++.
T Consensus 90 ~~~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34466666432 123467999999999999999988874
No 485
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.70 E-value=0.21 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.7
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999875
No 486
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.65 E-value=0.33 Score=45.66 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5567899999999999999988764
No 487
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.62 E-value=0.73 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999874
No 488
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.49 E-value=0.57 Score=53.96 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||++.+..-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4579999999999999999998874
No 489
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.45 E-value=0.51 Score=46.20 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.1
Q ss_pred CCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 202 KGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 202 ~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.....|+|.|..|+||||+++.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999885
No 490
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.44 E-value=0.41 Score=46.06 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.|+|-|.-|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3788899999999999998875
No 491
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.39 E-value=0.23 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.3
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...++.|+|++|+|||||+..++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999887753
No 492
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.32 E-value=0.33 Score=54.03 Aligned_cols=46 Identities=15% Similarity=-0.018 Sum_probs=31.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 178 EIFGREDEKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 178 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+.|.+..+.+.+..-.. .....+|.+.|++|+||||+|+.+.+.
T Consensus 373 ~~f~rpeV~~vLr~~~~~~----~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPR----PKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCG----GGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccc----cccceEEEecccCCCCHHHHHHHHHHH
Confidence 4455655555555544111 124578999999999999999999885
No 493
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.25 E-value=0.27 Score=49.28 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.6
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...|+|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998874
No 494
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.24 E-value=0.28 Score=46.75 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.9
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999998874
No 495
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.14 E-value=0.35 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.9
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
..+++|+|+.|+|||||.+.+..-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 468999999999999999999984
No 496
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.05 E-value=0.64 Score=45.29 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
....|+|.|+.|+||||+++.+.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998875
No 497
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.05 E-value=0.36 Score=51.15 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 203 GPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 203 ~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
...+++|+|+.|+|||||.+.++.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3468999999999999999999974
No 498
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.02 E-value=0.37 Score=50.04 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=26.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCEEEEEEccCCCcHHHHHHHHHcC
Q 048084 185 EKNDLVNRLICEGSKEQKGPRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 185 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
-++++.+.+. ..+++|+|+.|+|||||.+.+. .
T Consensus 155 gi~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 155 GIDELVDYLE---------GFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp THHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred CHHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH-H
Confidence 3566766662 3589999999999999999988 5
No 499
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.00 E-value=0.27 Score=46.10 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=20.9
Q ss_pred CEEEEEEccCCCcHHHHHHHHHcC
Q 048084 204 PRIISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 204 ~~vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.--|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356899999999999999888765
No 500
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.00 E-value=0.24 Score=50.39 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcC
Q 048084 206 IISLVGMGGIGKTTLAQFAYNN 227 (967)
Q Consensus 206 vv~i~G~~GiGKTtLa~~v~~~ 227 (967)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988874
Done!