BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048085
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
D+Y+TLG R + +K+ YR++A+ HPDKN P A E FK++ AY+
Sbjct: 4 DYYQTLGLARGASDEE--IKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYD 53
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAY 340
D+YE LG R + LKK YR+ A+ HPDKN +P A+E+FK + AY
Sbjct: 8 DYYEILGVSRGASDED--LKKAYRRLALKFHPDKNH-APGATEAFKAIGTAY 56
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
D+YE LG K + ++K Y++ AM HPD+N G A FK+++ AYE
Sbjct: 4 DYYEILGVS--KTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
D+YE LG K + ++K Y++ AM HPD+N G A FK+++ AYE
Sbjct: 4 DYYEILGVS--KTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
D+YE LG K + ++K Y++ AM HPD+N G A FK+++ AYE
Sbjct: 4 DYYEILGVS--KTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
D+Y+ LG PR+ +KK Y + A HPD N P A E F +L AYE
Sbjct: 8 DYYQILGVPRNAS--QKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 58
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASE-SFKKLQCAYE 341
+D+YE L PR +A +KK YRK A+ HPDKN + +E FK++ AYE
Sbjct: 9 VDYYEVLDVPRQASSEA--IKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 290 HYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSP-LASESFKKLQCAYE 341
+YE L PR D +KK YR+KA+ HPDKN + A + FK++ AYE
Sbjct: 4 YYEILDVPRSASADD--IKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYE 54
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 41.2 bits (95), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 291 YETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAY 340
Y LG ++ D +KK YRK A+ HPDKN +P A++ FK++ A+
Sbjct: 20 YHVLGLDKNATSDD--IKKSYRKLALKYHPDKNPDNPEAADKFKEINNAH 67
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 9/54 (16%)
Query: 290 HYETLGFPRHKKIDAA--VLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
+Y+ LG K DA+ LKK YRK A+ HPDKN P +E FK++ AYE
Sbjct: 10 YYDVLGV----KPDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYE 56
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 291 YETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAY 340
Y+ LG P A +K Y ++ L HPD+N GS A+E F ++ AY
Sbjct: 20 YDLLGVP--STATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAY 67
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 290 HYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
+Y+ LG P K +KK + K AM HPDKN SP A F+++ AYE
Sbjct: 9 YYDILGVP--KSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYE 57
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 270 FVKEETSSNDEMKRIINCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLA 329
F KE+ D ++RI N D ++ LG D + K YRK A+L+HPDK + +P +
Sbjct: 12 FTKEQA---DAIRRIRNSKDSWDMLGVKPGASRDE--VNKAYRKLAVLLHPDKCV-APGS 65
Query: 330 SESFKKL 336
++FK +
Sbjct: 66 EDAFKAV 72
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 290 HYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
+Y+ LG + + LKK YRK A+ HPDKN P E FK++ AYE
Sbjct: 8 YYDVLGVKPNATQEE--LKKAYRKLALKYHPDKN---PNEGEKFKQISQAYE 54
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 275 TSSNDEMKRIIN-----CMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLA 329
+S + M I+N D+Y LG ++ + E++ +A+ HPDK+ +P A
Sbjct: 2 SSGSSGMDAILNYRSEDTEDYYTLLGCDELSSVEQIL--AEFKVRALECHPDKHPENPKA 59
Query: 330 SESFKKLQCAYE 341
E+F+KLQ A E
Sbjct: 60 VETFQKLQKAKE 71
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 300 KKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
K + +++ ++K A+ +HPDKN +P A F K+ AYE
Sbjct: 31 KTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 72
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 34.7 bits (78), Expect = 0.084, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
D Y LG R A +KK Y+K A HPDKN P A + F ++ AYE
Sbjct: 18 DPYRVLGVSR--TASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYE 67
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 307 LKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
+++ ++K A+ +HPDKN +P A F K+ AYE
Sbjct: 19 IRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 53
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 34.3 bits (77), Expect = 0.097, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 307 LKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341
LKK YRK A+ HPDK G +E FK++ A+E
Sbjct: 25 LKKGYRKAALKYHPDKPTGD---TEKFKEISEAFE 56
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 32.3 bits (72), Expect = 0.36, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASE-SFKKLQCAYE 341
++YE LG +KK YRK A+ HPDKN + +E FK + AYE
Sbjct: 10 NYYEVLGV--QASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 32.0 bits (71), Expect = 0.46, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 307 LKKEYRKKAMLVHPDKNMGSP---LASESFKKLQCAY 340
+KK YRK ++VHPDK G P A F +L A+
Sbjct: 53 VKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAW 89
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 307 LKKEYRKKAMLVHPDKNMGSP 327
+KK YRK ++VHPDK G P
Sbjct: 66 VKKVYRKAVLVVHPDKATGQP 86
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 307 LKKEYRKKAMLVHPDKNMGSP 327
+KK YRK ++VHPDK G P
Sbjct: 134 VKKVYRKAVLVVHPDKATGQP 154
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 286 NCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSP---LASESFKKLQCAYE 341
NC D E ++ D L K YR A HPD+ LA E F+ + AYE
Sbjct: 16 NCYDVLEV----NREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYE 70
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 286 NCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPD 321
N +++E G P ++D ++L ++R HPD
Sbjct: 2 NAXNYFELFGLPIQFELDGSLLSSQFRALQKRFHPD 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,137,043
Number of Sequences: 62578
Number of extensions: 328678
Number of successful extensions: 1099
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 28
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)