Query 048085
Match_columns 341
No_of_seqs 206 out of 1264
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:08:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0720 Molecular chaperone (D 100.0 1E-41 2.2E-46 339.6 -1.1 281 16-341 3-285 (490)
2 KOG0713 Molecular chaperone (D 99.7 4.5E-17 9.8E-22 158.8 5.9 55 285-341 13-67 (336)
3 cd06257 DnaJ DnaJ domain or J- 99.5 3.2E-14 6.9E-19 102.7 5.5 51 289-341 1-51 (55)
4 smart00271 DnaJ DnaJ molecular 99.5 3.6E-14 7.8E-19 104.3 5.5 52 288-341 1-53 (60)
5 PRK14279 chaperone protein Dna 99.5 3.1E-14 6.8E-19 142.0 5.7 52 288-341 9-60 (392)
6 PRK14295 chaperone protein Dna 99.4 1.1E-13 2.5E-18 137.9 5.6 52 288-341 9-60 (389)
7 PF00226 DnaJ: DnaJ domain; I 99.4 1.7E-13 3.8E-18 102.4 4.7 51 289-341 1-52 (64)
8 KOG0716 Molecular chaperone (D 99.4 1.4E-13 3.1E-18 131.1 4.8 52 288-341 31-82 (279)
9 PTZ00037 DnaJ_C chaperone prot 99.3 6E-13 1.3E-17 134.3 5.0 48 288-341 28-75 (421)
10 KOG0721 Molecular chaperone (D 99.3 3.1E-12 6.7E-17 119.0 5.7 55 285-341 96-150 (230)
11 KOG0715 Molecular chaperone (D 99.3 4E-12 8.7E-17 122.7 4.9 51 288-341 43-93 (288)
12 KOG0719 Molecular chaperone (D 99.2 7.8E-12 1.7E-16 117.6 4.2 54 286-341 12-67 (264)
13 PTZ00341 Ring-infected erythro 99.2 2E-11 4.3E-16 132.4 5.8 53 286-341 571-623 (1136)
14 PRK09430 djlA Dna-J like membr 99.2 2.7E-11 5.8E-16 115.7 5.3 52 288-341 200-258 (267)
15 PHA03102 Small T antigen; Revi 99.1 3.4E-11 7.4E-16 107.0 3.8 47 289-341 6-54 (153)
16 PTZ00100 DnaJ chaperone protei 99.1 4.7E-11 1E-15 101.8 4.3 48 288-341 65-112 (116)
17 KOG0718 Molecular chaperone (D 99.1 6.1E-11 1.3E-15 120.2 4.6 52 288-341 9-63 (546)
18 KOG1150 Predicted molecular ch 99.0 1.5E-10 3.3E-15 107.0 3.4 69 270-340 29-104 (250)
19 PRK03578 hscB co-chaperone Hsc 99.0 5.9E-10 1.3E-14 100.8 6.0 54 288-341 6-64 (176)
20 KOG0722 Molecular chaperone (D 99.0 3E-10 6.5E-15 108.4 3.6 51 288-341 33-83 (329)
21 KOG0624 dsRNA-activated protei 98.8 1.9E-09 4E-14 107.1 4.1 67 273-341 379-448 (504)
22 PHA02624 large T antigen; Prov 98.8 4.7E-09 1E-13 110.4 4.0 48 288-341 11-60 (647)
23 KOG0550 Molecular chaperone (D 98.7 1.2E-08 2.7E-13 102.8 4.1 54 286-341 371-425 (486)
24 COG5407 SEC63 Preprotein trans 98.6 2.7E-08 5.8E-13 101.2 3.5 54 286-341 96-154 (610)
25 KOG1789 Endocytosis protein RM 98.5 7.9E-08 1.7E-12 105.1 4.3 51 288-341 1281-1333(2235)
26 COG5269 ZUO1 Ribosome-associat 97.7 2.5E-05 5.4E-10 75.8 3.4 58 284-341 39-99 (379)
27 KOG0568 Molecular chaperone (D 97.7 4.2E-05 9.1E-10 72.9 4.2 50 288-340 47-96 (342)
28 COG1076 DjlA DnaJ-domain-conta 96.9 0.00094 2E-08 60.1 3.7 52 288-341 113-171 (174)
29 KOG0723 Molecular chaperone (D 96.7 0.0021 4.5E-08 54.7 4.0 44 292-341 60-103 (112)
30 KOG0431 Auxilin-like protein a 96.7 0.0016 3.5E-08 67.1 4.0 39 302-340 400-445 (453)
31 KOG0717 Molecular chaperone (D 86.6 0.75 1.6E-05 48.0 4.0 15 327-341 46-60 (508)
32 KOG3192 Mitochondrial J-type c 86.2 0.82 1.8E-05 41.6 3.6 56 286-341 6-66 (168)
33 PF14687 DUF4460: Domain of un 82.8 2 4.3E-05 36.7 4.3 37 302-338 6-46 (112)
34 PF03656 Pam16: Pam16; InterP 81.5 2 4.4E-05 37.6 4.0 36 289-327 59-94 (127)
35 PF11808 DUF3329: Domain of un 77.0 5.8 0.00013 32.2 5.1 33 102-134 11-43 (90)
36 PF04156 IncA: IncA protein; 72.9 9.4 0.0002 34.2 5.9 29 104-134 18-46 (191)
37 PF13446 RPT: A repeated domai 71.0 5.3 0.00011 29.9 3.3 44 289-338 6-49 (62)
38 PF05297 Herpes_LMP1: Herpesvi 68.8 1.6 3.5E-05 43.5 0.0 49 133-188 128-180 (381)
39 PRK11598 putative metal depend 64.0 39 0.00085 36.0 9.2 39 81-119 51-93 (545)
40 PRK10263 DNA translocase FtsK; 62.9 38 0.00082 40.0 9.3 11 140-150 170-180 (1355)
41 PF03208 PRA1: PRA1 family pro 59.9 49 0.0011 28.6 7.6 71 101-175 43-114 (153)
42 PF09605 Trep_Strep: Hypotheti 57.6 1.5E+02 0.0033 27.0 11.7 61 121-181 59-123 (186)
43 PRK13706 conjugal transfer pil 53.0 2.3E+02 0.005 27.7 13.4 99 48-154 58-170 (248)
44 TIGR03717 R_switched_YjbE inte 50.9 1.5E+02 0.0032 27.1 9.4 63 138-206 94-156 (176)
45 PF13994 PgaD: PgaD-like prote 50.3 74 0.0016 27.6 7.1 22 77-98 14-35 (138)
46 TIGR02185 Trep_Strep conserved 47.0 2.3E+02 0.005 25.9 11.5 52 122-173 62-117 (189)
47 COG5552 Uncharacterized conser 46.7 44 0.00096 27.2 4.7 33 287-321 2-34 (88)
48 PF03208 PRA1: PRA1 family pro 46.6 84 0.0018 27.1 6.9 16 124-139 100-115 (153)
49 KOG4800 Neuronal membrane glyc 44.9 1.6E+02 0.0035 28.6 9.0 89 82-203 57-154 (248)
50 TIGR00751 menA 1,4-dihydroxy-2 44.1 1.4E+02 0.003 29.1 8.7 17 122-138 110-126 (284)
51 PRK12585 putative monovalent c 43.7 1.2E+02 0.0025 28.7 7.7 15 89-103 16-30 (197)
52 PF10329 DUF2417: Region of un 42.7 1.2E+02 0.0025 29.3 7.7 48 165-212 116-165 (232)
53 PF12036 DUF3522: Protein of u 42.7 88 0.0019 28.7 6.7 23 116-138 115-137 (186)
54 KOG0720 Molecular chaperone (D 40.5 11 0.00023 39.8 0.4 78 149-234 100-178 (490)
55 PLN02922 prenyltransferase 39.8 50 0.0011 32.7 5.0 67 64-138 73-140 (315)
56 PF12805 FUSC-like: FUSC-like 39.1 54 0.0012 31.4 5.0 64 91-156 24-87 (284)
57 PRK07419 1,4-dihydroxy-2-napht 35.9 1E+02 0.0022 30.5 6.4 17 121-137 119-135 (304)
58 PF10011 DUF2254: Predicted me 35.5 4.8E+02 0.01 26.3 14.9 145 51-202 12-168 (371)
59 PF07172 GRP: Glycine rich pro 35.4 46 0.001 27.6 3.4 21 180-201 8-28 (95)
60 PRK12873 ubiA prenyltransferas 35.2 4.4E+02 0.0095 26.0 10.7 43 104-146 144-193 (294)
61 PRK13387 1,4-dihydroxy-2-napht 35.2 2.4E+02 0.0052 27.9 8.9 31 121-151 114-159 (317)
62 PF14800 DUF4481: Domain of un 34.3 55 0.0012 32.8 4.2 18 81-98 71-88 (308)
63 TIGR02755 TraX_Ftype type-F co 32.5 4.6E+02 0.0099 25.2 11.7 41 137-189 129-171 (224)
64 PLN00012 chlorophyll synthetas 32.4 3.1E+02 0.0066 28.0 9.3 19 120-138 196-214 (375)
65 PRK10189 MATE family multidrug 32.1 5.8E+02 0.012 26.2 13.6 27 140-166 388-414 (478)
66 PRK09598 lipid A phosphoethano 31.9 2.9E+02 0.0063 29.4 9.4 19 81-99 49-67 (522)
67 TIGR00540 hemY_coli hemY prote 31.4 1.3E+02 0.0028 30.1 6.4 26 97-122 1-26 (409)
68 PF11239 DUF3040: Protein of u 30.0 96 0.0021 24.6 4.3 24 114-137 55-78 (82)
69 PRK12882 ubiA prenyltransferas 29.5 2.9E+02 0.0063 26.2 8.2 18 121-138 105-122 (276)
70 PF10947 DUF2628: Protein of u 29.2 3.2E+02 0.0069 22.3 8.8 60 80-141 41-101 (108)
71 PF03206 NifW: Nitrogen fixati 27.8 66 0.0014 27.3 3.1 37 302-338 54-90 (105)
72 PF10041 DUF2277: Uncharacteri 27.4 1.7E+02 0.0037 23.8 5.2 36 287-324 2-37 (78)
73 PRK12887 ubiA tocopherol phyty 27.0 3.2E+02 0.0069 26.9 8.2 18 121-138 120-137 (308)
74 TIGR00947 2A73 probable bicarb 26.8 7E+02 0.015 25.5 12.6 23 165-187 206-228 (425)
75 PLN02878 homogentisate phytylt 26.5 4.3E+02 0.0094 26.2 8.9 23 115-138 86-108 (280)
76 TIGR02235 menA_cyano-plnt 1,4- 26.5 2.1E+02 0.0046 27.8 6.8 18 121-138 106-123 (285)
77 PRK10726 hypothetical protein; 26.2 2.7E+02 0.0058 23.9 6.4 63 75-138 40-104 (105)
78 PF12434 Malate_DH: Malate deh 26.2 66 0.0014 21.4 2.2 17 304-320 10-26 (28)
79 PF10710 DUF2512: Protein of u 25.7 2.4E+02 0.0051 24.9 6.3 28 117-144 56-83 (136)
80 PRK10747 putative protoheme IX 25.4 1.8E+02 0.004 29.0 6.4 22 97-118 1-22 (398)
81 PF07264 EI24: Etoposide-induc 25.1 4.9E+02 0.011 23.2 8.6 24 80-103 15-39 (219)
82 PRK13591 ubiA prenyltransferas 25.1 1E+02 0.0023 30.7 4.5 20 120-139 118-137 (307)
83 TIGR01666 YCCS hypothetical me 24.9 1.4E+02 0.0031 32.9 5.9 34 120-153 109-142 (704)
84 PRK06080 1,4-dihydroxy-2-napht 23.6 3.2E+02 0.007 26.1 7.4 18 121-138 113-130 (293)
85 PF13260 DUF4051: Protein of u 23.4 35 0.00075 25.6 0.6 20 138-157 4-23 (54)
86 COG4062 MtrB Tetrahydromethano 23.3 57 0.0012 27.9 1.9 19 115-133 80-98 (108)
87 PF07332 DUF1469: Protein of u 21.9 4.5E+02 0.0098 21.6 7.9 9 121-129 73-81 (121)
88 TIGR00383 corA magnesium Mg(2+ 21.9 48 0.001 31.8 1.4 32 120-151 269-306 (318)
89 PF07856 Orai-1: Mediator of C 21.0 2.1E+02 0.0046 26.3 5.3 50 88-141 110-164 (175)
90 COG4317 Uncharacterized protei 20.7 1.2E+02 0.0027 25.1 3.3 31 103-133 4-41 (93)
91 cd06181 BI-1-like BAX inhibito 20.5 6.4E+02 0.014 22.8 13.0 36 60-95 52-88 (212)
92 KOG4740 Uncharacterized conser 20.4 1.6E+02 0.0034 32.0 4.9 53 80-133 344-397 (564)
93 PF07857 DUF1632: CEO family ( 20.3 1.9E+02 0.0041 28.1 5.0 78 41-140 24-102 (254)
No 1
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=339.63 Aligned_cols=281 Identities=35% Similarity=0.532 Sum_probs=224.2
Q ss_pred hchhhHHHHHHhhhhhhhhhhhhHhhhhhhHhHHH-HhhhHHHHHHHHHhhhhhhhhhhHHHhhchhHHHHHHHHHHHHH
Q 048085 16 SQKHVFSRAQTRLGCFRDKMGVLIERHWPMVCSGC-AKSGALLLLLLVHWKDCLVRGVQSMIKLGSSSLFIIMWSCFLSL 94 (341)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~-~~~~~~~~~~~~~w~~~~~rg~~s~~~~g~~~~~~~~w~~~~s~ 94 (341)
+..|.+-.++...++.||. ++++||.|+..+ +++|++.|++ .+|+||++||||+++|+|++++|+||||+++|.
T Consensus 3 ~~~~~~~~~~~~~~k~~~~----~~~~~p~~~~~~~~~~g~~~l~~-k~~~~~~~r~~~~~~~~~~a~~~s~~~s~~~s~ 77 (490)
T KOG0720|consen 3 RHVPFIGVVKLRVYKGRDL----VLTKMPLVFSVVFMHNGSPILLL-KVWLDCAIRGFQSFIRMGTAPFFSIMWSTLVSA 77 (490)
T ss_pred CCccceeeecccccchhhh----hhhcCCcccchhhccccCchhHh-HhhccccccCCcchhccCCcchhheeeeeeeec
Confidence 4455555566677777775 567788887776 5678888777 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHhHHHHHhhccccccccchhHHHHHHHHHHHHHH
Q 048085 95 TSMSCLLYVLLSMGAAGAAVRYLGYTPGLFIVGLFAILVLWMFANFWITGTLFIVGGYLFSLSHARLVVLMATFYSVYCV 174 (341)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~~~~~h~r~~~~~~~~y~~y~~ 174 (341)
+||.|+.|+++.|+++..++.|.|.++|..++++||+++||+| +||.+..+-.- .+|+++|+ +.+.|+.|.+
T Consensus 78 ~s~~ql~~~~~~~~a~~~~~~~~g~~~~~~~l~~~g~~~l~l~-~~w~~~~~~~~--~~~~~~~~-----~~~~~~~~~~ 149 (490)
T KOG0720|consen 78 NSMGQLTKFILIMVATVSVALYIGRVVGSVTLALFGLLLLWLY-SFWGTVLFSFN--LAFLSKDE-----LITVYSVYSA 149 (490)
T ss_pred cccccccccccchhhhhhhheeccccCcceeeccchHHHHHHH-HhhcchhhhHH--HHHhhhhh-----eeccccceee
Confidence 9999999999999999999999999999999999999999999 99999888776 89999999 7899999999
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHhhhccCCCcCCcccccccccccccCCCCCCCCcCCCCCCcccccCCCCCCCCCC
Q 048085 175 KVSVGWFGVFLSINLAFFSSDLLNYLLQLCDNVSENSHIEEQKESETVTEDGFSGGSEYSIPTDEPERVHSFKSSTKSAA 254 (341)
Q Consensus 175 ~~~~gw~g~~l~~nl~f~s~d~l~~~Lq~~~n~~e~~~~erqk~~e~~~~d~F~g~~e~s~P~s~~E~~~s~~SSS~~as 254 (341)
-++.+|.+..+.+|+.++.-+...++-....+.+.--. .-+. .+.+..+..
T Consensus 150 ~s~kt~w~~~~k~l~~~i~l~f~~~f~~~~~~~~~~~r-----~l~~------------------------vk~~~~e~g 200 (490)
T KOG0720|consen 150 LSYKTWWGLTLKLLRAVILLDFSIYFERNKIIQQTADR-----PLEP------------------------VKDSGAEEG 200 (490)
T ss_pred eccchhhhhcchhhhhhhhhhcceeeeeehhhHHHHhh-----hcch------------------------hhhhccccC
Confidence 99999999999999999887766655543333220000 0000 001111111
Q ss_pred CccccCCCCCCCCcccccccCCc-hHHHHHhhccCCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHH
Q 048085 255 TSSVINLPKECSSSKFVKEETSS-NDEMKRIINCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESF 333 (341)
Q Consensus 255 s~~~~~~~~e~s~s~~~~s~~~s-~~ei~ril~~~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~F 333 (341)
..++..+..+..+....+.+.+. .+++.|.++..|+|.+|||+.+ +++++|||.|||+|..+|||||+ .|.|+|+|
T Consensus 201 ~~tv~~~~~g~~~e~~va~n~t~~adrl~re~~~~daYsvlGl~~d--~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eaf 277 (490)
T KOG0720|consen 201 DETVESRDYGCKKEIPVATNATSFADRLSRELNILDAYSALGLPSD--CSDADLKKNYRKKAMLVHPDKNM-IPRAEEAF 277 (490)
T ss_pred CCchhcCCcccccccccccchhhHHHhhhhhhcCCCchhhcCCCCC--CCHHHHHHHHHhhceEeCCCccC-ChhHHHHH
Confidence 11122222222223334444444 7788888899999999999998 99999999999999999999999 99999999
Q ss_pred HHHHhhhC
Q 048085 334 KKLQCAYE 341 (341)
Q Consensus 334 k~L~~AYE 341 (341)
|.++.|||
T Consensus 278 k~Lq~Afe 285 (490)
T KOG0720|consen 278 KKLQVAFE 285 (490)
T ss_pred HHHHHHHH
Confidence 99999996
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.5e-17 Score=158.77 Aligned_cols=55 Identities=45% Similarity=0.740 Sum_probs=52.7
Q ss_pred hccCCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 285 INCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 285 l~~~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
...+|||++|||+++ |+..|||+||||||+|+||||||+||.|.|.|++|+.|||
T Consensus 13 ~~~rDfYelLgV~k~--Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYE 67 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKN--ASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYE 67 (336)
T ss_pred hcCCCHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 345799999999999 9999999999999999999999999999999999999997
No 3
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.50 E-value=3.2e-14 Score=102.69 Aligned_cols=51 Identities=47% Similarity=0.737 Sum_probs=47.9
Q ss_pred CchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 289 d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
|||++||++++ ++.++||++||++++++|||++++.+.+++.|++|++||+
T Consensus 1 ~~y~vLgl~~~--~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~ 51 (55)
T cd06257 1 DYYDILGVPPD--ASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYE 51 (55)
T ss_pred ChHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHH
Confidence 69999999999 9999999999999999999999855779999999999995
No 4
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.49 E-value=3.6e-14 Score=104.31 Aligned_cols=52 Identities=50% Similarity=0.740 Sum_probs=48.8
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCC-ChhHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMG-SPLASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g-~~~A~E~Fk~L~~AYE 341 (341)
.|+|++||++++ ++.++||++||++++++|||++++ .+.+++.|++|++||+
T Consensus 1 ~~~y~vLgl~~~--~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~ 53 (60)
T smart00271 1 TDYYEILGVPRD--ASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYE 53 (60)
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHH
Confidence 389999999999 999999999999999999999987 5679999999999996
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=3.1e-14 Score=142.03 Aligned_cols=52 Identities=42% Similarity=0.620 Sum_probs=50.3
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
+|||++|||+++ ++.+|||+|||++|++||||||+++++|+++|++|++|||
T Consensus 9 ~Dyy~~Lgv~~~--a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~ 60 (392)
T PRK14279 9 KDFYKELGVSSD--ASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHD 60 (392)
T ss_pred cCHHHhcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHH
Confidence 599999999999 9999999999999999999999988899999999999996
No 6
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.1e-13 Score=137.88 Aligned_cols=52 Identities=44% Similarity=0.684 Sum_probs=50.1
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
.|||++|||+++ ++.+|||+|||++|++||||||+++++|+++|++|++|||
T Consensus 9 ~d~y~~Lgv~~~--a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~ 60 (389)
T PRK14295 9 KDYYKVLGVPKD--ATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYD 60 (389)
T ss_pred cCHHHhcCCCCC--CCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHH
Confidence 599999999999 9999999999999999999999988889999999999996
No 7
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.42 E-value=1.7e-13 Score=102.41 Aligned_cols=51 Identities=41% Similarity=0.693 Sum_probs=47.9
Q ss_pred CchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCh-hHHHHHHHHHhhhC
Q 048085 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSP-LASESFKKLQCAYE 341 (341)
Q Consensus 289 d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~-~A~E~Fk~L~~AYE 341 (341)
|+|++|||+++ ++.++||++||++++++||||+++++ .+++.|+.|++||+
T Consensus 1 ~~y~iLgl~~~--~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~ 52 (64)
T PF00226_consen 1 NPYEILGLPPD--ASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYE 52 (64)
T ss_dssp HHHHHCTSTTT--SSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHH
T ss_pred ChHHHCCCCCC--CCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHH
Confidence 58999999999 99999999999999999999998766 69999999999995
No 8
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.4e-13 Score=131.15 Aligned_cols=52 Identities=42% Similarity=0.763 Sum_probs=50.3
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
.|+|+|||++++ ++.++|||+||++++++||||++++|+++++|++||+||+
T Consensus 31 ~~LYdVLgl~k~--at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ 82 (279)
T KOG0716|consen 31 LDLYDVLGLPKT--ATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYA 82 (279)
T ss_pred hHHHHHhCCCcc--cchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHH
Confidence 589999999999 9999999999999999999999999999999999999995
No 9
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.35 E-value=6e-13 Score=134.29 Aligned_cols=48 Identities=40% Similarity=0.620 Sum_probs=45.1
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
.|||++|||+++ |+.+|||||||++|++||||||+ + +|+|++|++|||
T Consensus 28 ~d~Y~vLGV~~~--As~~eIKkAYrkla~k~HPDk~~-~---~e~F~~i~~AYe 75 (421)
T PTZ00037 28 EKLYEVLNLSKD--CTTSEIKKAYRKLAIKHHPDKGG-D---PEKFKEISRAYE 75 (421)
T ss_pred hhHHHHcCCCCC--CCHHHHHHHHHHHHHHHCCCCCc-h---HHHHHHHHHHHH
Confidence 499999999999 99999999999999999999986 3 489999999997
No 10
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.1e-12 Score=118.99 Aligned_cols=55 Identities=31% Similarity=0.455 Sum_probs=49.8
Q ss_pred hccCCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 285 INCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 285 l~~~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
.+..|+|+|||++++ ++++|||||||+|++|+||||++...+.++.|..|++||+
T Consensus 96 ~~~fDPyEILGl~pg--as~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~ 150 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPG--ASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQ 150 (230)
T ss_pred hhcCCcHHhhCCCCC--CCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHH
Confidence 355799999999999 9999999999999999999999855667788999999995
No 11
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4e-12 Score=122.70 Aligned_cols=51 Identities=39% Similarity=0.561 Sum_probs=48.7
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
.|||++|||+++ ++..|||+||++||++||||.|+ +++|+++|++|.+|||
T Consensus 43 ~d~Y~vLgv~~~--At~~EIK~Af~~LaKkyHPD~n~-~~~a~~kF~eI~~AYE 93 (288)
T KOG0715|consen 43 EDYYKVLGVSRN--ATLSEIKSAFRKLAKKYHPDVNK-DKEASKKFKEISEAYE 93 (288)
T ss_pred cchhhhhCcCCC--CCHHHHHHHHHHHHHhhCCCCCC-CcchhhHHHHHHHHHH
Confidence 389999999999 99999999999999999999999 5599999999999997
No 12
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=7.8e-12 Score=117.55 Aligned_cols=54 Identities=43% Similarity=0.628 Sum_probs=48.7
Q ss_pred ccCCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC--CChhHHHHHHHHHhhhC
Q 048085 286 NCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNM--GSPLASESFKKLQCAYE 341 (341)
Q Consensus 286 ~~~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~--g~~~A~E~Fk~L~~AYE 341 (341)
..+|+|+||||.++ +++.+||||||++++++||||++ +..+|+++||+|+.||+
T Consensus 12 ~~~d~YevLGVer~--a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~ 67 (264)
T KOG0719|consen 12 NKKDLYEVLGVERD--ATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQ 67 (264)
T ss_pred cccCHHHHhhhccc--CCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 34699999999999 99999999999999999999995 23479999999999995
No 13
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.18 E-value=2e-11 Score=132.41 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=49.5
Q ss_pred ccCCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 286 NCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 286 ~~~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
..++||++|||+++ |+..+||+|||++|++||||||+++ .|.++|++|++||+
T Consensus 571 ~d~dYYdILGVs~d--AS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYe 623 (1136)
T PTZ00341 571 PDTLFYDILGVGVN--ADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQ 623 (1136)
T ss_pred CCCChHHHcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHH
Confidence 45799999999999 9999999999999999999999964 78999999999996
No 14
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.16 E-value=2.7e-11 Score=115.71 Aligned_cols=52 Identities=37% Similarity=0.535 Sum_probs=46.9
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--C-----hhHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMG--S-----PLASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g--~-----~~A~E~Fk~L~~AYE 341 (341)
.++|++||++++ +|.+|||++||+++++|||||+.+ . +.|+|+|++|++|||
T Consensus 200 ~~ay~vLgv~~~--as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe 258 (267)
T PRK09430 200 EDAYKVLGVSES--DDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYE 258 (267)
T ss_pred HhHHHHcCCCCC--CCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 489999999999 999999999999999999999743 2 248999999999996
No 15
>PHA03102 Small T antigen; Reviewed
Probab=99.12 E-value=3.4e-11 Score=106.98 Aligned_cols=47 Identities=32% Similarity=0.643 Sum_probs=43.1
Q ss_pred CchhhcCCCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 289 DHYETLGFPRHKKI--DAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 289 d~YeVLGV~~~~~a--s~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
..|++|||+++ + |.+|||+|||++++++||||++ + +++|++||+||+
T Consensus 6 ~l~~vLGl~~~--A~~s~~eIKkAYr~la~~~HPDkgg-~---~e~~k~in~Ay~ 54 (153)
T PHA03102 6 ELMDLLGLPRS--AWGNLPLMRKAYLRKCLEFHPDKGG-D---EEKMKELNTLYK 54 (153)
T ss_pred HHHHHcCCCCC--CCCCHHHHHHHHHHHHHHHCcCCCc-h---hHHHHHHHHHHH
Confidence 68999999999 8 9999999999999999999975 4 379999999995
No 16
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.12 E-value=4.7e-11 Score=101.81 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=43.6
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
.++|++||++++ ++.+|||++||++++++|||++ |+ ++.|++|++|||
T Consensus 65 ~eAy~ILGv~~~--As~~eIkkaYRrLa~~~HPDkg-Gs---~~~~~kIneAye 112 (116)
T PTZ00100 65 SEAYKILNISPT--ASKERIREAHKQLMLRNHPDNG-GS---TYIASKVNEAKD 112 (116)
T ss_pred HHHHHHcCCCCC--CCHHHHHHHHHHHHHHhCCCCC-CC---HHHHHHHHHHHH
Confidence 379999999999 9999999999999999999985 34 478999999997
No 17
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.1e-11 Score=120.23 Aligned_cols=52 Identities=37% Similarity=0.673 Sum_probs=47.9
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCh---hHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSP---LASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~---~A~E~Fk~L~~AYE 341 (341)
.|+|.+||++++ |+.+|||+||||+++.|||||+.+.+ .|++.|+++++|||
T Consensus 9 ~e~Ya~LNlpkd--At~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyE 63 (546)
T KOG0718|consen 9 IELYALLNLPKD--ATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYE 63 (546)
T ss_pred hhHHHHhCCCcc--cCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHH
Confidence 489999999999 99999999999999999999998432 49999999999997
No 18
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.5e-10 Score=107.01 Aligned_cols=69 Identities=29% Similarity=0.493 Sum_probs=62.5
Q ss_pred cccccCCchHHHHHhhcc------CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-hhHHHHHHHHHhhh
Q 048085 270 FVKEETSSNDEMKRIINC------MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGS-PLASESFKKLQCAY 340 (341)
Q Consensus 270 ~~~s~~~s~~ei~ril~~------~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~-~~A~E~Fk~L~~AY 340 (341)
..+..+++..+++|++.+ .|+|++|.+.|. .+.++||+.||++++..|||||++| +.|..+|-.+.+||
T Consensus 29 k~d~vLts~~qIeRllrpgstyfnLNpfeVLqIdpe--v~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~ 104 (250)
T KOG1150|consen 29 KRDSVLTSKQQIERLLRPGSTYFNLNPFEVLQIDPE--VTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAY 104 (250)
T ss_pred hhhcccCcHHHHHHHhcCCccccccChHHHHhcCCC--CCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHH
Confidence 355677888999999874 599999999999 9999999999999999999999988 67999999999998
No 19
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.99 E-value=5.9e-10 Score=100.85 Aligned_cols=54 Identities=30% Similarity=0.455 Sum_probs=46.9
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhH-----HHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLA-----SESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A-----~E~Fk~L~~AYE 341 (341)
.|||++||+++..+++..+||++||++++++||||+++.+++ .+.++.||+||+
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~ 64 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQ 64 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 599999999997668999999999999999999999866544 345689999995
No 20
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3e-10 Score=108.37 Aligned_cols=51 Identities=35% Similarity=0.607 Sum_probs=48.5
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
.|.|++|||+++ ++..||+||||+||++||||+++ ++++.+.|+.|..|||
T Consensus 33 enCYdVLgV~Re--a~KseIakAYRqLARrhHPDr~r-~~e~k~~F~~iAtaye 83 (329)
T KOG0722|consen 33 ENCYDVLGVARE--ANKSEIAKAYRQLARRHHPDRNR-DPESKKLFVKIATAYE 83 (329)
T ss_pred hhHHHHhhhhhh--ccHHHHHHHHHHHHHHhCCcccC-Cchhhhhhhhhhcccc
Confidence 699999999999 99999999999999999999998 7778899999999997
No 21
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=1.9e-09 Score=107.15 Aligned_cols=67 Identities=28% Similarity=0.362 Sum_probs=54.6
Q ss_pred ccCCchHHHHHhhccCCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCh---hHHHHHHHHHhhhC
Q 048085 273 EETSSNDEMKRIINCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSP---LASESFKKLQCAYE 341 (341)
Q Consensus 273 s~~~s~~ei~ril~~~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~---~A~E~Fk~L~~AYE 341 (341)
+..+......+....+|||+||||.++ ++..||.|||||+|.|||||..++.+ .|+++|..|..|.|
T Consensus 379 eGle~Akrlkkqs~kRDYYKILGVkRn--AsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKE 448 (504)
T KOG0624|consen 379 EGLERAKRLKKQSGKRDYYKILGVKRN--ASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKE 448 (504)
T ss_pred HHHHHHHHHHHHhccchHHHHhhhccc--ccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHH
Confidence 333344444455667999999999999 99999999999999999999988554 48899999988764
No 22
>PHA02624 large T antigen; Provisional
Probab=98.76 E-value=4.7e-09 Score=110.39 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=44.0
Q ss_pred CCchhhcCCCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKI--DAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~a--s~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
.++|++||++++ + +.++||+|||+++++|||||+. + +|+|++|++||+
T Consensus 11 ~elyelLGL~~~--A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYe 60 (647)
T PHA02624 11 KELMDLLGLPMA--AWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYK 60 (647)
T ss_pred HHHHHHcCCCCC--CCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHH
Confidence 379999999999 8 9999999999999999999963 3 589999999996
No 23
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.2e-08 Score=102.84 Aligned_cols=54 Identities=43% Similarity=0.645 Sum_probs=50.7
Q ss_pred ccCCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC-hhHHHHHHHHHhhhC
Q 048085 286 NCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGS-PLASESFKKLQCAYE 341 (341)
Q Consensus 286 ~~~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~-~~A~E~Fk~L~~AYE 341 (341)
+..|+|.+||+.+. ++.+||||+||++++.||||||.++ .+|+.+|+++-+||.
T Consensus 371 kRkd~ykilGi~~~--as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~ 425 (486)
T KOG0550|consen 371 KRKDWYKILGISRN--ASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYT 425 (486)
T ss_pred hhhhHHHHhhhhhh--cccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHH
Confidence 45799999999999 9999999999999999999999998 689999999999984
No 24
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.59 E-value=2.7e-08 Score=101.19 Aligned_cols=54 Identities=33% Similarity=0.495 Sum_probs=48.4
Q ss_pred ccCCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCC---C--hhHHHHHHHHHhhhC
Q 048085 286 NCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMG---S--PLASESFKKLQCAYE 341 (341)
Q Consensus 286 ~~~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g---~--~~A~E~Fk~L~~AYE 341 (341)
+--|+||+||++.+ ++..|||++||+|+.|+||||-+. + .+.+|++++|++||+
T Consensus 96 ~~fDPyEILGI~~~--ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~ 154 (610)
T COG5407 96 RGFDPYEILGIDQD--TSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYG 154 (610)
T ss_pred cCCChHHhhcccCC--CcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHH
Confidence 34699999999999 999999999999999999999765 1 268899999999996
No 25
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=7.9e-08 Score=105.10 Aligned_cols=51 Identities=33% Similarity=0.411 Sum_probs=44.3
Q ss_pred CCchhhcCCCCCC-CCC-HHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHK-KID-AAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~-~as-~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
.+.|++|+++-+. +.| .++|||+|||+|.|||||||| +..|+|.++|+|||
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE 1333 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYE 1333 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHH
Confidence 5789999998653 333 489999999999999999998 77899999999997
No 26
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=2.5e-05 Score=75.83 Aligned_cols=58 Identities=33% Similarity=0.366 Sum_probs=49.3
Q ss_pred hhccCCchhhcCCCCCC-CCCHHHHHHHHHHHHHhhCCCCC--CCChhHHHHHHHHHhhhC
Q 048085 284 IINCMDHYETLGFPRHK-KIDAAVLKKEYRKKAMLVHPDKN--MGSPLASESFKKLQCAYE 341 (341)
Q Consensus 284 il~~~d~YeVLGV~~~~-~as~~eIKkAYRkLALk~HPDKn--~g~~~A~E~Fk~L~~AYE 341 (341)
-.+..|+|.+||++..+ .+++.+|.++.++...+|||||. .|+.+..+.|+.|++|||
T Consensus 39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~e 99 (379)
T COG5269 39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKARE 99 (379)
T ss_pred hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHH
Confidence 34557999999999875 58889999999999999999996 344567799999999986
No 27
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=4.2e-05 Score=72.92 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=44.2
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhh
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAY 340 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AY 340 (341)
+++|.+|||+.. ++.+++|.+|.++++++|||-.. ++...+.|++|.+||
T Consensus 47 ~e~fril~v~e~--~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideaf 96 (342)
T KOG0568|consen 47 MECFRILGVEEG--ADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAF 96 (342)
T ss_pred HHHHHHhccccc--CchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHH
Confidence 479999999999 99999999999999999999876 444567888888887
No 28
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00094 Score=60.09 Aligned_cols=52 Identities=35% Similarity=0.454 Sum_probs=46.1
Q ss_pred CCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--Ch-----hHHHHHHHHHhhhC
Q 048085 288 MDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMG--SP-----LASESFKKLQCAYE 341 (341)
Q Consensus 288 ~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g--~~-----~A~E~Fk~L~~AYE 341 (341)
.+.|.+||++.. .+..+||++||++..++|||+-.+ .+ .++++++++++||+
T Consensus 113 ~~~l~~l~~~~~--~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~ 171 (174)
T COG1076 113 EDALKVLGVEIK--ADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171 (174)
T ss_pred hhHHHHhcCchh--hhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 689999999999 999999999999999999999432 22 58899999999996
No 29
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0021 Score=54.66 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=35.8
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhhhC
Q 048085 292 ETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYE 341 (341)
Q Consensus 292 eVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~AYE 341 (341)
.||||++. ++.+.||++.||....-||||.. +| -.=-+||+|++
T Consensus 60 lIL~v~~s--~~k~KikeaHrriM~~NHPD~GG-SP---YlAsKINEAKd 103 (112)
T KOG0723|consen 60 LILGVTPS--LDKDKIKEAHRRIMLANHPDRGG-SP---YLASKINEAKD 103 (112)
T ss_pred HHhCCCcc--ccHHHHHHHHHHHHHcCCCcCCC-CH---HHHHHHHHHHH
Confidence 49999998 99999999999999999999985 66 22235666653
No 30
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.65 E-value=0.0016 Score=67.10 Aligned_cols=39 Identities=38% Similarity=0.534 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCh---h----HHHHHHHHHhhh
Q 048085 302 IDAAVLKKEYRKKAMLVHPDKNMGSP---L----ASESFKKLQCAY 340 (341)
Q Consensus 302 as~~eIKkAYRkLALk~HPDKn~g~~---~----A~E~Fk~L~~AY 340 (341)
++.++|||+|||..|.+||||-++.+ + |++.|-.+++|+
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eaw 445 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAW 445 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999987653 2 666677777665
No 31
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.62 E-value=0.75 Score=48.01 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHhhhC
Q 048085 327 PLASESFKKLQCAYE 341 (341)
Q Consensus 327 ~~A~E~Fk~L~~AYE 341 (341)
.+|++.|+.|+.|||
T Consensus 46 eeat~~F~~i~aAYe 60 (508)
T KOG0717|consen 46 EEATQQFQLIQAAYE 60 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 379999999999996
No 32
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=86.15 E-value=0.82 Score=41.60 Aligned_cols=56 Identities=29% Similarity=0.387 Sum_probs=44.7
Q ss_pred ccCCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCC----Ch-hHHHHHHHHHhhhC
Q 048085 286 NCMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMG----SP-LASESFKKLQCAYE 341 (341)
Q Consensus 286 ~~~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g----~~-~A~E~Fk~L~~AYE 341 (341)
.+.+||+++|.......+++.++.-|.-..++.|||+... ++ .|.|--.++|+||.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~ 66 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYD 66 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHH
Confidence 4568999998877766888888889999999999999432 11 47788899999984
No 33
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=82.78 E-value=2 Score=36.69 Aligned_cols=37 Identities=30% Similarity=0.342 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCChh----HHHHHHHHHh
Q 048085 302 IDAAVLKKEYRKKAMLVHPDKNMGSPL----ASESFKKLQC 338 (341)
Q Consensus 302 as~~eIKkAYRkLALk~HPDKn~g~~~----A~E~Fk~L~~ 338 (341)
.+..++|++.|...+++|||.-...|+ -++.+|.++.
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~ 46 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNS 46 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHH
Confidence 678899999999999999998665664 2345666654
No 34
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=81.53 E-value=2 Score=37.55 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=26.1
Q ss_pred CchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCh
Q 048085 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSP 327 (341)
Q Consensus 289 d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~ 327 (341)
+...||||++. .+.++|.+.|.+|-..-+|||.. +.
T Consensus 59 EA~~ILnv~~~--~~~eeI~k~y~~Lf~~Nd~~kGG-Sf 94 (127)
T PF03656_consen 59 EARQILNVKEE--LSREEIQKRYKHLFKANDPSKGG-SF 94 (127)
T ss_dssp HHHHHHT--G----SHHHHHHHHHHHHHHT-CCCTS--H
T ss_pred HHHHHcCCCCc--cCHHHHHHHHHHHHhccCCCcCC-CH
Confidence 34469999997 99999999999999999999874 53
No 35
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=77.04 E-value=5.8 Score=32.19 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 048085 102 YVLLSMGAAGAAVRYLGYTPGLFIVGLFAILVL 134 (341)
Q Consensus 102 ~~l~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l 134 (341)
..++.+.+++.++.++|..++.+.+|+++.++-
T Consensus 11 ~l~~~~l~~~lvG~~~g~~~~~l~~~l~~~l~w 43 (90)
T PF11808_consen 11 RLLLLLLAAALVGWLFGHLWWALLLGLLLYLFW 43 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345566777788888888888888888777653
No 36
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=72.94 E-value=9.4 Score=34.15 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 048085 104 LLSMGAAGAAVRYLGYTPGLFIVGLFAILVL 134 (341)
Q Consensus 104 l~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l 134 (341)
|+..|+++++. .|..+|..+.++.|++++
T Consensus 18 li~~gI~~Lv~--~~~~l~~~~s~~lg~~~l 46 (191)
T PF04156_consen 18 LIASGIAALVL--FISGLGALISFILGIALL 46 (191)
T ss_pred HHHHHHHHHHH--HHhhhHHHHHHHHHHHHH
Confidence 44444444333 333355555555555443
No 37
>PF13446 RPT: A repeated domain in UCH-protein
Probab=70.99 E-value=5.3 Score=29.86 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=32.1
Q ss_pred CchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHh
Q 048085 289 DHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQC 338 (341)
Q Consensus 289 d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~ 338 (341)
+.|+.||++++ .+++.|-.+|+.... -.|+. -..+.++.+.|.+
T Consensus 6 ~Ay~~Lgi~~~--~~Dd~Ii~~f~~~~~-~~P~~---~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 6 EAYEILGIDED--TDDDFIISAFQSKVN-DDPSQ---KDTLREALRVIAE 49 (62)
T ss_pred HHHHHhCcCCC--CCHHHHHHHHHHHHH-cChHh---HHHHHHHHHHHHH
Confidence 68999999988 999999999998887 33321 1245566666554
No 38
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=68.78 E-value=1.6 Score=43.46 Aligned_cols=49 Identities=27% Similarity=0.549 Sum_probs=0.0
Q ss_pred HHHHH-hhhHhHHHHHhhccccccccchhHHHHHHHHH---HHHHHhhhhhHHHHHHHHH
Q 048085 133 VLWMF-ANFWITGTLFIVGGYLFSLSHARLVVLMATFY---SVYCVKVSVGWFGVFLSIN 188 (341)
Q Consensus 133 ~lw~y-~~fw~t~~~~~~gg~~~~~~h~r~~~~~~~~y---~~y~~~~~~gw~g~~l~~n 188 (341)
.||-| +|||+.-.++ ++|.|. .++||+++| +-+-+-+-.-||=+||++=
T Consensus 128 lLr~~GAs~WtiLaFc----LAF~La---ivlLIIAv~L~qaWfT~L~dL~WL~LFlaiL 180 (381)
T PF05297_consen 128 LLRELGASFWTILAFC----LAFLLA---IVLLIIAVLLHQAWFTILVDLYWLLLFLAIL 180 (381)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHhhhHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 5788876655 456653 566777776 3456667778988888863
No 39
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=64.03 E-value=39 Score=36.03 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcc
Q 048085 81 SSLFIIMWSCFLSLTSMSCLLY----VLLSMGAAGAAVRYLGY 119 (341)
Q Consensus 81 ~~~~~~~w~~~~s~~~~~~~~~----~l~~~~~~~~~~~~~g~ 119 (341)
.|+.+++++.+..+++..+.-+ +++.+-+.++++.|.-+
T Consensus 51 ~s~~~~~~~~~~~~~~l~~~~~~~k~~~~~l~~~sa~~~Yf~~ 93 (545)
T PRK11598 51 ASMPVVAFSVINIVFTLLSFPWLRRPLACLFILVGAAAQYFMM 93 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777887777777775543 34555555555555433
No 40
>PRK10263 DNA translocase FtsK; Provisional
Probab=62.88 E-value=38 Score=40.02 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=4.7
Q ss_pred hHhHHHHHhhc
Q 048085 140 FWITGTLFIVG 150 (341)
Q Consensus 140 fw~t~~~~~~g 150 (341)
+|+.+++++.|
T Consensus 170 llLIGLiLlTg 180 (1355)
T PRK10263 170 VWAAGLTLFTG 180 (1355)
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 41
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=59.90 E-value=49 Score=28.57 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHhH-HHHHhhccccccccchhHHHHHHHHHHHHHHh
Q 048085 101 LYVLLSMGAAGAAVRYLGYTPGLFIVGLFAILVLWMFANFWIT-GTLFIVGGYLFSLSHARLVVLMATFYSVYCVK 175 (341)
Q Consensus 101 ~~~l~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t-~~~~~~gg~~~~~~h~r~~~~~~~~y~~y~~~ 175 (341)
-|+++.+++.... .++--.+++++..++.+|.|-+.+.. .--+..+|.-+..++.-.++.+.++..+|+..
T Consensus 43 NY~~i~~~~~~~~----ll~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (153)
T PF03208_consen 43 NYLLIFLLLFLIF----LLTNPFFLLVLLLVVALWAFIYKSRKENDPIVIGGRKISPRQVLLALLIVSILLLFFTS 114 (153)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcccCcchhccCcccCHHHHHHHHHHHHHHHHHHHh
Confidence 4666655554432 22333444555667777888888876 44456678888888888888888887777754
No 42
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=57.59 E-value=1.5e+02 Score=26.99 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhHhHHHHHhhcccccc----ccchhHHHHHHHHHHHHHHhhhhhHH
Q 048085 121 PGLFIVGLFAILVLWMFANFWITGTLFIVGGYLFS----LSHARLVVLMATFYSVYCVKVSVGWF 181 (341)
Q Consensus 121 ~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~~~----~~h~r~~~~~~~~y~~y~~~~~~gw~ 181 (341)
-.++|-++.--+++.+-|.+|+.....+++|..-- ..|-|=.--.+.-|++|++..--.++
T Consensus 59 G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay~vf~~~~~g~~~ 123 (186)
T PF09605_consen 59 GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGGYKSKKRNTIAYAVFSLGYMGPYL 123 (186)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhHH
Confidence 35566777766778888999999999999887542 23333344477889999987763333
No 43
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=52.99 E-value=2.3e+02 Score=27.67 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=51.3
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhhhh----------hHHHhhchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048085 48 SGCAKSGALLLLLLVHWKDCLVRGV----------QSMIKLGSSSLFIIM-WSCFLSLTSMSCLLYVLLSMGAAGAAVRY 116 (341)
Q Consensus 48 ~~~~~~~~~~~~~~~~w~~~~~rg~----------~s~~~~g~~~~~~~~-w~~~~s~~~~~~~~~~l~~~~~~~~~~~~ 116 (341)
.|+-..||+..=++.+ +.|| .-..||.--++.+-+ +... .+...-.+++..+.++..++..
T Consensus 58 ~~l~~iGRlAfPiFaf-----VeGfNla~hT~~r~kY~~RL~ifAlIseipf~l~---~~~~~~~NI~fTLalgl~~l~~ 129 (248)
T PRK13706 58 EWMFLAGRGAFPLFAL-----VWGLNLSRHAHIRQPAINRLWGWGIIAQFAYYLA---GFPWYEGNILFAFAVAAQVLTW 129 (248)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH---hcccccCcHHHHHHHHHHHHHH
Confidence 4677788888777765 8888 346666655544321 1000 1122223555555555555554
Q ss_pred hccchhHHHHH--HHHHHH-HHHHhhhHhHHHHHhhccccc
Q 048085 117 LGYTPGLFIVG--LFAILV-LWMFANFWITGTLFIVGGYLF 154 (341)
Q Consensus 117 ~g~~~~~~~v~--~~~~~~-lw~y~~fw~t~~~~~~gg~~~ 154 (341)
+-.......++ +.+++. .++..+++..|.++|++=|.|
T Consensus 130 ~e~~~~~~~~~~il~~~l~~~~~~~DYg~~gvl~il~fy~~ 170 (248)
T PRK13706 130 CETRSGWRTAAAILLMALWGPLSGTSYGIAGLLMLAVSHRL 170 (248)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 43321111111 112222 233366888888888887765
No 44
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=50.85 E-value=1.5e+02 Score=27.06 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=50.7
Q ss_pred hhhHhHHHHHhhccccccccchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHhhhccC
Q 048085 138 ANFWITGTLFIVGGYLFSLSHARLVVLMATFYSVYCVKVSVGWFGVFLSINLAFFSSDLLNYLLQLCDN 206 (341)
Q Consensus 138 ~~fw~t~~~~~~gg~~~~~~h~r~~~~~~~~y~~y~~~~~~gw~g~~l~~nl~f~s~d~l~~~Lq~~~n 206 (341)
.+||.+-..+.+-=.+||++- |.+..++.-=...+-++|+.+++=+..++++.+..+++++.+
T Consensus 94 ~~~~~~v~~I~~~D~~fS~Ds------V~a~~~~~~~~~~li~~g~~i~i~~m~~~s~~~~~~~~~~p~ 156 (176)
T TIGR03717 94 TTLWAAIKTIVIADAVMSLDN------VLAVAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLMDRFPW 156 (176)
T ss_pred CcHHHHHHHHHHHHHHHHHHH------HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888888888888888876 555566655567788999999999999999999999986543
No 45
>PF13994 PgaD: PgaD-like protein
Probab=50.31 E-value=74 Score=27.65 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.0
Q ss_pred hhchhHHHHHHHHHHHHHHHHH
Q 048085 77 KLGSSSLFIIMWSCFLSLTSMS 98 (341)
Q Consensus 77 ~~g~~~~~~~~w~~~~s~~~~~ 98 (341)
|++...+-++.|+.|+.+....
T Consensus 14 r~~~~~lT~~~W~~~~yL~~pl 35 (138)
T PF13994_consen 14 RLIDYFLTLLFWGGFIYLWRPL 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888899999998877664
No 46
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=46.99 E-value=2.3e+02 Score=25.93 Aligned_cols=52 Identities=19% Similarity=0.416 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHhhhHhHHHHHhhccccccc----cchhHHHHHHHHHHHHH
Q 048085 122 GLFIVGLFAILVLWMFANFWITGTLFIVGGYLFSL----SHARLVVLMATFYSVYC 173 (341)
Q Consensus 122 ~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~~~~----~h~r~~~~~~~~y~~y~ 173 (341)
.++|.|+.--++..+-|++|+.....+++|..--+ .+-|=..-.+.-|.+||
T Consensus 62 ~~~i~~~i~gl~~~~~G~~~~~~~~~ii~gliaeli~~~g~Yks~~~~~ia~~~~~ 117 (189)
T TIGR02185 62 VIFIFGILLGLLFFLMGMYWPMIISSIIGGLLADIIASTGGYKNKRKVTIAYVLFF 117 (189)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 34566666556777889999888888887754322 22222234556677766
No 47
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=46.72 E-value=44 Score=27.23 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=25.4
Q ss_pred cCCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 048085 287 CMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPD 321 (341)
Q Consensus 287 ~~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPD 321 (341)
|+|.-++.|+++. ++.+||+.|-++..+|..--
T Consensus 2 CRNIk~LfnfdPP--AT~~EvrdAAlQfVRKlSGt 34 (88)
T COG5552 2 CRNIKELFNFDPP--ATPVEVRDAALQFVRKLSGT 34 (88)
T ss_pred ccchHHHhCCCCC--CCcHHHHHHHHHHHHHhcCC
Confidence 4566678899998 99999999987766665333
No 48
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=46.58 E-value=84 Score=27.11 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 048085 124 FIVGLFAILVLWMFAN 139 (341)
Q Consensus 124 ~~v~~~~~~~lw~y~~ 139 (341)
..+++++++++|+.+.
T Consensus 100 ~~~~~~~~~~l~~~~~ 115 (153)
T PF03208_consen 100 LALLIVSILLLFFTSA 115 (153)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555666667776655
No 49
>KOG4800 consensus Neuronal membrane glycoprotein/Myelin proteolipid protein [Function unknown]
Probab=44.92 E-value=1.6e+02 Score=28.57 Aligned_cols=89 Identities=21% Similarity=0.431 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHhHHHHH---------hhccc
Q 048085 82 SLFIIMWSCFLSLTSMSCLLYVLLSMGAAGAAVRYLGYTPGLFIVGLFAILVLWMFANFWITGTLF---------IVGGY 152 (341)
Q Consensus 82 ~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~---------~~gg~ 152 (341)
-+.+|=|-+.++..+++|++|..+- |+|+. +.+| |++| +.--||+|+... +.|+.
T Consensus 57 tv~ii~~~F~~~~~~wI~ifqyvf~-~iaa~---f~~y----------G~~i--l~egF~ttgA~r~~~g~~k~r~cGr~ 120 (248)
T KOG4800|consen 57 TVLIIEQYFSINIVSWICIFQYVFY-GIAAF---FFLY----------GILI--LAEGFYTTGAVRKLYGDFKTRMCGRC 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHH----------hHHH--HhhhhhhhhhHHHHHhhhhceecCcc
Confidence 3566778899999999999987543 33333 3333 3333 234588888877 55654
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHhhh
Q 048085 153 LFSLSHARLVVLMATFYSVYCVKVSVGWFGVFLSINLAFFSSDLLNYLLQL 203 (341)
Q Consensus 153 ~~~~~h~r~~~~~~~~y~~y~~~~~~gw~g~~l~~nl~f~s~d~l~~~Lq~ 203 (341)
. |- +++..-|. .-+-|+|+ +.|.+=.+..++-=|
T Consensus 121 V-s~------~f~~lTy~-----l~f~W~~I-----~~f~~v~v~iy~~fw 154 (248)
T KOG4800|consen 121 V-SG------VFVGLTYL-----LAFVWLLI-----FGFSAVPVFIYFNFW 154 (248)
T ss_pred h-hh------hhhHHHHH-----HHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 1 10 23333333 13478888 566666666666544
No 50
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=44.05 E-value=1.4e+02 Score=29.07 Aligned_cols=17 Identities=12% Similarity=0.254 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHh
Q 048085 122 GLFIVGLFAILVLWMFA 138 (341)
Q Consensus 122 ~~~~v~~~~~~~lw~y~ 138 (341)
.++++|+.|+++.|.|.
T Consensus 110 ~~l~lg~~~~~~~~~Yt 126 (284)
T TIGR00751 110 WFIALGALCIAAAITYT 126 (284)
T ss_pred HHHHHHHHHHHHhHhhc
Confidence 56789999999999994
No 51
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=43.72 E-value=1.2e+02 Score=28.72 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q 048085 89 SCFLSLTSMSCLLYV 103 (341)
Q Consensus 89 ~~~~s~~~~~~~~~~ 103 (341)
-+|+.+++.+|++.+
T Consensus 16 G~~f~ligaIGLlRf 30 (197)
T PRK12585 16 GGLLSILAAIGVIRL 30 (197)
T ss_pred HHHHHHHHHHHHHhc
Confidence 556666666666643
No 52
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=42.69 E-value=1.2e+02 Score=29.29 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhh--hHHHHHHhhhccCCCcCCc
Q 048085 165 MATFYSVYCVKVSVGWFGVFLSINLAFFS--SDLLNYLLQLCDNVSENSH 212 (341)
Q Consensus 165 ~~~~y~~y~~~~~~gw~g~~l~~nl~f~s--~d~l~~~Lq~~~n~~e~~~ 212 (341)
+..++++=-.+.+.||+|.+.-+=-.+.+ |=+.++-+++-.++.|++-
T Consensus 116 lilil~V~~~R~~eG~vGi~s~iWa~l~~l~~~~~D~~v~~gk~eeeerl 165 (232)
T PF10329_consen 116 LILILAVPYTRHEEGWVGIASVIWAFLSSLWGILADRYVEWGKAEEEERL 165 (232)
T ss_pred HHHHHhhHhHHhHhhHhhHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 44567777789999999998766433333 8888888987766665554
No 53
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=42.67 E-value=88 Score=28.68 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=20.5
Q ss_pred HhccchhHHHHHHHHHHHHHHHh
Q 048085 116 YLGYTPGLFIVGLFAILVLWMFA 138 (341)
Q Consensus 116 ~~g~~~~~~~v~~~~~~~lw~y~ 138 (341)
=+++|.+..++|+..+++-|.|.
T Consensus 115 ~~~~~~~Pi~~~~~i~~~~w~~r 137 (186)
T PF12036_consen 115 SLWNTIGPILIGLLILLVSWLYR 137 (186)
T ss_pred cchhhHHHHHHHHHHHHHHHhee
Confidence 36889999999999999999987
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=40.53 E-value=11 Score=39.77 Aligned_cols=78 Identities=26% Similarity=0.220 Sum_probs=57.2
Q ss_pred hccccccccchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHhhhccCCCcCCcccccccc-cccccCCC
Q 048085 149 VGGYLFSLSHARLVVLMATFYSVYCVKVSVGWFGVFLSINLAFFSSDLLNYLLQLCDNVSENSHIEEQKES-ETVTEDGF 227 (341)
Q Consensus 149 ~gg~~~~~~h~r~~~~~~~~y~~y~~~~~~gw~g~~l~~nl~f~s~d~l~~~Lq~~~n~~e~~~~erqk~~-e~~~~d~F 227 (341)
.|=..+...|+-+.+++..+| .+|-++.+++|++|.++|+++...+.+.-.++.+...+.-+. ....-..|
T Consensus 100 ~g~~~~~~~l~~~g~~~l~l~--------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~s~kt~w~~~~k~l~~~i~l~f 171 (490)
T KOG0720|consen 100 IGRVVGSVTLALFGLLLLWLY--------SFWGTVLFSFNLAFLSKDELITVYSVYSALSYKTWWGLTLKLLRAVILLDF 171 (490)
T ss_pred ccccCcceeeccchHHHHHHH--------HhhcchhhhHHHHHhhhhheeccccceeeeccchhhhhcchhhhhhhhhhc
Confidence 444455556666666666554 479999999999999999999999999988888777666555 44444667
Q ss_pred CCCCCcC
Q 048085 228 SGGSEYS 234 (341)
Q Consensus 228 ~g~~e~s 234 (341)
+..+++.
T Consensus 172 ~~~f~~~ 178 (490)
T KOG0720|consen 172 SIYFERN 178 (490)
T ss_pred ceeeeee
Confidence 7777554
No 55
>PLN02922 prenyltransferase
Probab=39.80 E-value=50 Score=32.69 Aligned_cols=67 Identities=21% Similarity=0.131 Sum_probs=36.0
Q ss_pred hhhhhhhhhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHHh
Q 048085 64 WKDCLVRGVQSMIKLGSSSLFIIMWSCFLSLTSMSCLLYVLLSMGAAGAAVR-YLGYTPGLFIVGLFAILVLWMFA 138 (341)
Q Consensus 64 w~~~~~rg~~s~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~v~~~~~~~lw~y~ 138 (341)
+-| ..||.|..-|-|+.-+.- |--.+..+..+++.+++.|.+.. +..-.+.++++|+.|+++-|+|-
T Consensus 73 y~D-~~~G~D~~~~~~~~~~~~-------s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt 140 (315)
T PLN02922 73 AYD-ADTGVDKNKKESVVNLVG-------SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQ 140 (315)
T ss_pred hhH-hccCcCcccCCCCCCccc-------CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 344 579999877666433221 22222222223333333232222 21123678899999999999984
No 56
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=39.07 E-value=54 Score=31.39 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHhHHHHHhhccccccc
Q 048085 91 FLSLTSMSCLLYVLLSMGAAGAAVRYLGYTPGLFIVGLFAILVLWMFANFWITGTLFIVGGYLFSL 156 (341)
Q Consensus 91 ~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~~~~ 156 (341)
.+....|..+..+.-.+|+-|.-..-+| ++.++++++++.-.-.-..-|.-..++++||..+.+
T Consensus 24 ~l~~~~~~~~~F~~~ml~~~G~r~~~i~--~~~Ll~~v~t~~~~~~~~~~~~~~~l~~~Gglwy~~ 87 (284)
T PF12805_consen 24 WLLILVLALLTFFFGMLGVYGPRAATIG--FATLLVAVYTMAGPSPGPEALEHALLFLAGGLWYLL 87 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH
No 57
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=35.87 E-value=1e+02 Score=30.47 Aligned_cols=17 Identities=6% Similarity=0.168 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 048085 121 PGLFIVGLFAILVLWMF 137 (341)
Q Consensus 121 ~~~~~v~~~~~~~lw~y 137 (341)
+-++++|++|+++-|.|
T Consensus 119 ~~~l~ig~~g~~~~~~Y 135 (304)
T PRK07419 119 WTVLGLVLLCCFLGYLY 135 (304)
T ss_pred HHHHHHHHHHHHHhhec
Confidence 56788999999999999
No 58
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=35.52 E-value=4.8e+02 Score=26.30 Aligned_cols=145 Identities=13% Similarity=0.175 Sum_probs=72.3
Q ss_pred HhhhHHHHHHHHHhhhhhhh--h-hhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcc
Q 048085 51 AKSGALLLLLLVHWKDCLVR--G-VQSMIKLGSSSLFIIMWSCFLSLTSMSCLLYVLLSMGAAGAAVRY--------LGY 119 (341)
Q Consensus 51 ~~~~~~~~~~~~~w~~~~~r--g-~~s~~~~g~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~--------~g~ 119 (341)
+-++.+++..+..|.|-.+- + ...+...|+.+.=.++=...=|++++.+++.-++..+..-+..+| +-=
T Consensus 12 ~~~~av~la~~~~~ld~~~~~~~~~~~~~~~~~~~ar~lLstia~smitv~~~~fSi~~val~~assq~sPR~l~~f~~d 91 (371)
T PF10011_consen 12 YAVLAVVLAFLTPYLDRLLPDSGLLPFFFLIGPDGARTLLSTIAGSMITVTGFVFSITLVALQLASSQFSPRLLRNFMRD 91 (371)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhC
Confidence 44566777777777775543 1 444455555544333333344444455555444444444444443 211
Q ss_pred chhHHHHHHHHHHHHHHHhhhHhHHHHHhhccccccccchhHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHhhhhhHHHH
Q 048085 120 TPGLFIVGLFAILVLWMFANFWITGTLFIVGGYLFSLSHARLVVLMATFYSVYCVKVSVGWFGVF-LSINLAFFSSDLLN 198 (341)
Q Consensus 120 ~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~~~~~h~r~~~~~~~~y~~y~~~~~~gw~g~~-l~~nl~f~s~d~l~ 198 (341)
..--.+.|+|---++ | =+. .++.+++....- -+++++.++.+.++.|+..-+-|..=+ -+++.+-+-..+=.
T Consensus 92 ~~~q~vLg~Figtfv--y---~l~-~l~~i~~~~~~~-~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~~ 164 (371)
T PF10011_consen 92 RVTQVVLGTFIGTFV--Y---SLL-VLIAIRSGDYGS-VPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIARIEE 164 (371)
T ss_pred chHHHHHHHHHHHHH--H---HHH-HHHHcccccccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 111122332221111 1 011 122233332222 678999999999999998888887632 34444444444444
Q ss_pred HHhh
Q 048085 199 YLLQ 202 (341)
Q Consensus 199 ~~Lq 202 (341)
+..+
T Consensus 165 ~~~~ 168 (371)
T PF10011_consen 165 DARK 168 (371)
T ss_pred HHHH
Confidence 4444
No 59
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.44 E-value=46 Score=27.64 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHh
Q 048085 180 WFGVFLSINLAFFSSDLLNYLL 201 (341)
Q Consensus 180 w~g~~l~~nl~f~s~d~l~~~L 201 (341)
-|+|+||+-| +|||++-..=+
T Consensus 8 lL~l~LA~lL-lisSevaa~~~ 28 (95)
T PF07172_consen 8 LLGLLLAALL-LISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHH-HHHhhhhhHHh
Confidence 3678888866 56666655434
No 60
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=35.18 E-value=4.4e+02 Score=26.04 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhccch-------hHHHHHHHHHHHHHHHhhhHhHHHH
Q 048085 104 LLSMGAAGAAVRYLGYTP-------GLFIVGLFAILVLWMFANFWITGTL 146 (341)
Q Consensus 104 l~~~~~~~~~~~~~g~~~-------~~~~v~~~~~~~lw~y~~fw~t~~~ 146 (341)
-+.+|++++....+|++. +..++.++.++++|--+.+|+-+.-
T Consensus 144 ~~vlg~~~a~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~q 193 (294)
T PRK12873 144 QAILALCWGFAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMA 193 (294)
T ss_pred hHHHHHHHHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778777777777432 2344555688888998888887754
No 61
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=35.18 E-value=2.4e+02 Score=27.88 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHh---------------hhHhHHHHHhhcc
Q 048085 121 PGLFIVGLFAILVLWMFA---------------NFWITGTLFIVGG 151 (341)
Q Consensus 121 ~~~~~v~~~~~~~lw~y~---------------~fw~t~~~~~~gg 151 (341)
+.++++|+.|+++.+.|. .|-..|.+++.|+
T Consensus 114 ~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~ 159 (317)
T PRK13387 114 WLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLA 159 (317)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHH
Confidence 557889999999999994 4566666665554
No 62
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=34.25 E-value=55 Score=32.81 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 048085 81 SSLFIIMWSCFLSLTSMS 98 (341)
Q Consensus 81 ~~~~~~~w~~~~s~~~~~ 98 (341)
.-||+++||.++|-..|+
T Consensus 71 ~I~yivlw~~l~Stl~l~ 88 (308)
T PF14800_consen 71 VIFYIVLWANLYSTLQLF 88 (308)
T ss_pred HHHHHHHHHHHHccchhh
Confidence 346899999999976665
No 63
>TIGR02755 TraX_Ftype type-F conjugative transfer system pilin acetylase TraX. TraX is responsible for the acetylation of the F-pilin TraA during conjugative plasmid transfer. The purpose of this acetylation is unclear, but the reported transcriptional regulation of TraX may indicate that it is involved in the process of pilu extension/retraction.
Probab=32.46 E-value=4.6e+02 Score=25.17 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=25.6
Q ss_pred HhhhHhHHHHHhhccccc--cccchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 048085 137 FANFWITGTLFIVGGYLF--SLSHARLVVLMATFYSVYCVKVSVGWFGVFLSINL 189 (341)
Q Consensus 137 y~~fw~t~~~~~~gg~~~--~~~h~r~~~~~~~~y~~y~~~~~~gw~g~~l~~nl 189 (341)
-..++..|.+++++=|.| ..++|+--. .-.+|+|+++++|.
T Consensus 129 ~~dYg~~Gvlli~~~y~~~~~r~~~~~~~------------~~~~l~~~~~~ln~ 171 (224)
T TIGR02755 129 GTSYGIAGLLMLAGALRLYRVRDTEERLA------------LFACLLLLVPALNL 171 (224)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhccHHHHH------------HHHHHHHHHHHhcc
Confidence 455777787777776654 333333221 23578888988887
No 64
>PLN00012 chlorophyll synthetase; Provisional
Probab=32.35 E-value=3.1e+02 Score=28.03 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHh
Q 048085 120 TPGLFIVGLFAILVLWMFA 138 (341)
Q Consensus 120 ~~~~~~v~~~~~~~lw~y~ 138 (341)
.|-++++|++|+++.|.|-
T Consensus 196 ~~~~~~l~l~gi~l~~~YS 214 (375)
T PLN00012 196 FPIVFYLALGGSLLSYIYS 214 (375)
T ss_pred cHHHHHHHHHHHHHhhhhc
Confidence 4667778888888888885
No 65
>PRK10189 MATE family multidrug exporter; Provisional
Probab=32.13 E-value=5.8e+02 Score=26.21 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=18.2
Q ss_pred hHhHHHHHhhccccccccchhHHHHHH
Q 048085 140 FWITGTLFIVGGYLFSLSHARLVVLMA 166 (341)
Q Consensus 140 fw~t~~~~~~gg~~~~~~h~r~~~~~~ 166 (341)
+...+.-++..|.+=...+.|....+.
T Consensus 388 ~~~~~~~~~~~g~lrg~G~t~~~~~i~ 414 (478)
T PRK10189 388 MPIWAASWVLPAGLKGARDARYAMWVS 414 (478)
T ss_pred HHHHHHHHHHHhHhhcCCCchHHHHHH
Confidence 344445556677777888888876654
No 66
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=31.87 E-value=2.9e+02 Score=29.39 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 048085 81 SSLFIIMWSCFLSLTSMSC 99 (341)
Q Consensus 81 ~~~~~~~w~~~~s~~~~~~ 99 (341)
.++.+++|+....+++..+
T Consensus 49 ~~~~~~~~~~~~~~~~l~~ 67 (522)
T PRK09598 49 AMLVVLLFCVNGLLFLLLG 67 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666777777776666666
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=31.42 E-value=1.3e+02 Score=30.09 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchh
Q 048085 97 MSCLLYVLLSMGAAGAAVRYLGYTPG 122 (341)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~~g~~~~ 122 (341)
|..++.+++.++++++++.++-.-||
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~G 26 (409)
T TIGR00540 1 MFKVLFLFLLLIAGIVAGPMIAGHQG 26 (409)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45555555555555555555544443
No 68
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=29.97 E-value=96 Score=24.57 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=13.7
Q ss_pred HHHhccchhHHHHHHHHHHHHHHH
Q 048085 114 VRYLGYTPGLFIVGLFAILVLWMF 137 (341)
Q Consensus 114 ~~~~g~~~~~~~v~~~~~~~lw~y 137 (341)
+...|...+...++++|.++++.-
T Consensus 55 llv~G~~~~~~~~~v~G~~v~~~~ 78 (82)
T PF11239_consen 55 LLVAGVVLSQPPLGVAGFVVMVAG 78 (82)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444455777777777653
No 69
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=29.53 E-value=2.9e+02 Score=26.25 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 048085 121 PGLFIVGLFAILVLWMFA 138 (341)
Q Consensus 121 ~~~~~v~~~~~~~lw~y~ 138 (341)
+-.+.++++++++.|.|.
T Consensus 105 ~~~~~~~~~~~~~~~~Yt 122 (276)
T PRK12882 105 PLCLAIALFNSLLLVLYA 122 (276)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555677788888888884
No 70
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=29.16 E-value=3.2e+02 Score=22.29 Aligned_cols=60 Identities=27% Similarity=0.453 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHHHHHHhhhH
Q 048085 80 SSSLFIIMWSCFLSLTSMSCLLYVLLSMGAAGAAVRYLGYTPGLF-IVGLFAILVLWMFANFW 141 (341)
Q Consensus 80 ~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~-~v~~~~~~~lw~y~~fw 141 (341)
.|.||-.+|+..=-+---. +. +++...+.+.+...++..+++. ++.+..-++.=|+||.|
T Consensus 41 ~Af~f~~~w~l~r~mw~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~n~~ 101 (108)
T PF10947_consen 41 WAFFFGPLWLLYRKMWLYA-II-FLALLVALAIILILLGFPPGLGLGLSLAISLFFGMFANYW 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655554332 22 2222222333333443332222 33333334444566665
No 71
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=27.76 E-value=66 Score=27.34 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHh
Q 048085 302 IDAAVLKKEYRKKAMLVHPDKNMGSPLASESFKKLQC 338 (341)
Q Consensus 302 as~~eIKkAYRkLALk~HPDKn~g~~~A~E~Fk~L~~ 338 (341)
.+++++..+||.+-.+-+-|=-.++|..++.||..++
T Consensus 54 ~~e~~~~~~~R~~L~~AY~dFv~S~p~~ekvFkVf~~ 90 (105)
T PF03206_consen 54 LSEEEDWAAYRRALERAYQDFVTSTPLEEKVFKVFKD 90 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHh
Confidence 4555555555555555555544444445555555544
No 72
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.36 E-value=1.7e+02 Score=23.83 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=27.6
Q ss_pred cCCchhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 048085 287 CMDHYETLGFPRHKKIDAAVLKKEYRKKAMLVHPDKNM 324 (341)
Q Consensus 287 ~~d~YeVLGV~~~~~as~~eIKkAYRkLALk~HPDKn~ 324 (341)
|+|.-.+-|++|. ++++||+.|=.+..+|..=-..|
T Consensus 2 CRnI~~L~~fePp--aT~~EI~aAAlQyVRKvSG~~~P 37 (78)
T PF10041_consen 2 CRNIKTLRNFEPP--ATDEEIRAAALQYVRKVSGFRKP 37 (78)
T ss_pred CcchhhhcCCCCC--CCHHHHHHHHHHHHHHHccCCCc
Confidence 3455567788888 99999999998888887655544
No 73
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=27.02 E-value=3.2e+02 Score=26.88 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 048085 121 PGLFIVGLFAILVLWMFA 138 (341)
Q Consensus 121 ~~~~~v~~~~~~~lw~y~ 138 (341)
+.++.++++++++.|.|.
T Consensus 120 ~~~~~~~~~~~~lg~~Ys 137 (308)
T PRK12887 120 PWLLITVGISLLIGTAYS 137 (308)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 567888999999999997
No 74
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=26.81 E-value=7e+02 Score=25.47 Aligned_cols=23 Identities=13% Similarity=0.366 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Q 048085 165 MATFYSVYCVKVSVGWFGVFLSI 187 (341)
Q Consensus 165 ~~~~y~~y~~~~~~gw~g~~l~~ 187 (341)
+....++..-.+|-||+|++.++
T Consensus 206 ~l~~~~L~lT~SRg~wl~l~~~~ 228 (425)
T TIGR00947 206 GVNALCLLFTYSRGGWLGLLAAL 228 (425)
T ss_pred HHHHHHHHHhcchhhHHHHHHHH
Confidence 34567778888888888866553
No 75
>PLN02878 homogentisate phytyltransferase
Probab=26.55 E-value=4.3e+02 Score=26.17 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=13.1
Q ss_pred HHhccchhHHHHHHHHHHHHHHHh
Q 048085 115 RYLGYTPGLFIVGLFAILVLWMFA 138 (341)
Q Consensus 115 ~~~g~~~~~~~v~~~~~~~lw~y~ 138 (341)
.++|..| +++.-+.+.++.++|.
T Consensus 86 ~~~g~~~-l~~al~~~~~lg~~YS 108 (280)
T PLN02878 86 WIVGSWP-LFWALFVSFVLGTAYS 108 (280)
T ss_pred HHHChHH-HHHHHHHHHHHHHHHH
Confidence 3344432 3444445568888888
No 76
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=26.49 E-value=2.1e+02 Score=27.85 Aligned_cols=18 Identities=0% Similarity=0.113 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 048085 121 PGLFIVGLFAILVLWMFA 138 (341)
Q Consensus 121 ~~~~~v~~~~~~~lw~y~ 138 (341)
+.++++|++|+++-|.|-
T Consensus 106 ~~~l~lg~~g~~~~~~Yt 123 (285)
T TIGR02235 106 ITVLALVGLCCFLGYLYQ 123 (285)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 557889999999999994
No 77
>PRK10726 hypothetical protein; Provisional
Probab=26.18 E-value=2.7e+02 Score=23.93 Aligned_cols=63 Identities=29% Similarity=0.479 Sum_probs=37.5
Q ss_pred HHhhchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh
Q 048085 75 MIKLGSSSLFI--IMWSCFLSLTSMSCLLYVLLSMGAAGAAVRYLGYTPGLFIVGLFAILVLWMFA 138 (341)
Q Consensus 75 ~~~~g~~~~~~--~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lw~y~ 138 (341)
|+=-|++.+|. --|=+||.+.-.+-+.-+.+.+=.-|=++ |.-..-++.|+++|+.+.+|+-|
T Consensus 40 fl~YG~nTlfF~LYTWPFFLALmPvsVlvGi~l~~Ll~g~l~-~s~l~t~l~V~~lFwllF~~L~G 104 (105)
T PRK10726 40 FLIYGSNTLFFFLYTWPFFLALMPVSVLVGIALHSLLRGKLL-YSILFTLLTVGCLFWLLFSWLLG 104 (105)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567776554 45889988765554433333333222222 22233467889999999998765
No 78
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=26.15 E-value=66 Score=21.39 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhCC
Q 048085 304 AAVLKKEYRKKAMLVHP 320 (341)
Q Consensus 304 ~~eIKkAYRkLALk~HP 320 (341)
.++.|.+.|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47788999999999993
No 79
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=25.73 E-value=2.4e+02 Score=24.93 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=22.7
Q ss_pred hccchhHHHHHHHHHHHHHHHhhhHhHH
Q 048085 117 LGYTPGLFIVGLFAILVLWMFANFWITG 144 (341)
Q Consensus 117 ~g~~~~~~~v~~~~~~~lw~y~~fw~t~ 144 (341)
.|.+.+...=++.+.+++|+.++.++..
T Consensus 56 ~gN~~AtiaD~~La~~~iW~~~~~~~~~ 83 (136)
T PF10710_consen 56 TGNIVATIADFGLAFLVIWLMGYILTGN 83 (136)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6777888877888899999998887763
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=25.43 E-value=1.8e+02 Score=28.97 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 048085 97 MSCLLYVLLSMGAAGAAVRYLG 118 (341)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~~g 118 (341)
|..++.+++++.++.+++.++.
T Consensus 1 M~r~l~~~~~l~~~~~~~~~~~ 22 (398)
T PRK10747 1 MLKVLLLFVLLIAGIVVGPMIA 22 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555555555555555553
No 81
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=25.15 E-value=4.9e+02 Score=23.22 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=11.6
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHH
Q 048085 80 SSSLFI-IMWSCFLSLTSMSCLLYV 103 (341)
Q Consensus 80 ~~~~~~-~~w~~~~s~~~~~~~~~~ 103 (341)
+-.+.. ++-|..+++.-..++.++
T Consensus 15 ~~~l~~~~l~p~~l~~~l~~~~~~~ 39 (219)
T PF07264_consen 15 SPKLRRLSLIPLLLNLLLFLALFIF 39 (219)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 444455555555554444
No 82
>PRK13591 ubiA prenyltransferase; Provisional
Probab=25.06 E-value=1e+02 Score=30.73 Aligned_cols=20 Identities=5% Similarity=0.547 Sum_probs=12.6
Q ss_pred chhHHHHHHHHHHHHHHHhh
Q 048085 120 TPGLFIVGLFAILVLWMFAN 139 (341)
Q Consensus 120 ~~~~~~v~~~~~~~lw~y~~ 139 (341)
..|..++|++++++.|+|.-
T Consensus 118 ~~g~~ll~ll~~l~g~lYS~ 137 (307)
T PRK13591 118 MDGMLLLAFLPFITGYLYSK 137 (307)
T ss_pred HHhHHHHHHHHHHHHHHhcC
Confidence 44445567777777777763
No 83
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=24.95 E-value=1.4e+02 Score=32.94 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhHhHHHHHhhcccc
Q 048085 120 TPGLFIVGLFAILVLWMFANFWITGTLFIVGGYL 153 (341)
Q Consensus 120 ~~~~~~v~~~~~~~lw~y~~fw~t~~~~~~gg~~ 153 (341)
.+|.++|+++.++-.=.++..|.-.+++++||..
T Consensus 109 af~tLliaiytmlg~~~~~~w~~~pllll~Galw 142 (704)
T TIGR01666 109 AFGSLLVALYTMLGYIEVNVWFIQPVMLLCGTLW 142 (704)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 3444555555444322233334445555555543
No 84
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=23.58 E-value=3.2e+02 Score=26.06 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 048085 121 PGLFIVGLFAILVLWMFA 138 (341)
Q Consensus 121 ~~~~~v~~~~~~~lw~y~ 138 (341)
+-++++|++|+++.|.|.
T Consensus 113 ~~~~~~~~~~~~~~~~Ys 130 (293)
T PRK06080 113 WWLLLLGLLCIAAAILYT 130 (293)
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 456778888888888885
No 85
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=23.43 E-value=35 Score=25.60 Aligned_cols=20 Identities=30% Similarity=0.707 Sum_probs=17.2
Q ss_pred hhhHhHHHHHhhcccccccc
Q 048085 138 ANFWITGTLFIVGGYLFSLS 157 (341)
Q Consensus 138 ~~fw~t~~~~~~gg~~~~~~ 157 (341)
+-+||..+++++|||.+-+|
T Consensus 4 awywivli~lv~~gy~~hmk 23 (54)
T PF13260_consen 4 AWYWIVLIVLVVVGYFCHMK 23 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999988765
No 86
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=23.35 E-value=57 Score=27.89 Aligned_cols=19 Identities=32% Similarity=0.717 Sum_probs=16.2
Q ss_pred HHhccchhHHHHHHHHHHH
Q 048085 115 RYLGYTPGLFIVGLFAILV 133 (341)
Q Consensus 115 ~~~g~~~~~~~v~~~~~~~ 133 (341)
.|.|+..|+-|+||+|+++
T Consensus 80 a~yGfviGl~i~aLlAlil 98 (108)
T COG4062 80 AFYGFVIGLGIMALLALIL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999865
No 87
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=21.92 E-value=4.5e+02 Score=21.57 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=3.8
Q ss_pred hhHHHHHHH
Q 048085 121 PGLFIVGLF 129 (341)
Q Consensus 121 ~~~~~v~~~ 129 (341)
.+.+||+.+
T Consensus 73 ~a~liv~~~ 81 (121)
T PF07332_consen 73 LAFLIVAGL 81 (121)
T ss_pred HHHHHHHHH
Confidence 344444433
No 88
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=21.92 E-value=48 Score=31.79 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHHH------HHHHhhhHhHHHHHhhcc
Q 048085 120 TPGLFIVGLFAILV------LWMFANFWITGTLFIVGG 151 (341)
Q Consensus 120 ~~~~~~v~~~~~~~------lw~y~~fw~t~~~~~~gg 151 (341)
+|--||.|++|+=+ =|-||++++.+..+++++
T Consensus 269 lP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~ 306 (318)
T TIGR00383 269 IPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIAL 306 (318)
T ss_pred HHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHH
Confidence 46667777777633 288998888777765553
No 89
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=20.97 E-value=2.1e+02 Score=26.28 Aligned_cols=50 Identities=14% Similarity=0.353 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHH-HHHH--HhhhH
Q 048085 88 WSCFLSLTSMSCLLYVLLSMGAAGAAVRYLG--YTPGLFIVGLFAIL-VLWM--FANFW 141 (341)
Q Consensus 88 w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g--~~~~~~~v~~~~~~-~lw~--y~~fw 141 (341)
|..-..+ |+.-||..++..|=+-++-- ...+..+.++.+++ ++|+ -.+||
T Consensus 110 W~~s~~l----Gi~lFL~~l~l~~WIKF~~~~~~~aa~~~t~i~~~~~li~~~~~~~~w 164 (175)
T PF07856_consen 110 WRFSTVL----GIPLFLAELALLGWIKFWDSPSPAAAIAITAILVPVLLIFVVFIQHFW 164 (175)
T ss_pred HHHHHHH----HHHHHHHHHHHHHheeehhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555 99999999999988777666 56666666666543 3444 24555
No 90
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.73 E-value=1.2e+02 Score=25.09 Aligned_cols=31 Identities=39% Similarity=0.508 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhc-------cchhHHHHHHHHHHH
Q 048085 103 VLLSMGAAGAAVRYLG-------YTPGLFIVGLFAILV 133 (341)
Q Consensus 103 ~l~~~~~~~~~~~~~g-------~~~~~~~v~~~~~~~ 133 (341)
.|+++|+.-+|+...- --|.+-+||+.||++
T Consensus 4 yllslgAGllVGiiyaLl~vrsPAPP~iAlvGllGilv 41 (93)
T COG4317 4 YLLSLGAGLLVGIIYALLKVRSPAPPAIALVGLLGILV 41 (93)
T ss_pred HHHHHhhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 4677776655554432 246777888888875
No 91
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=20.54 E-value=6.4e+02 Score=22.79 Aligned_cols=36 Identities=22% Similarity=0.087 Sum_probs=18.1
Q ss_pred HHHHhhhh-hhhhhhHHHhhchhHHHHHHHHHHHHHH
Q 048085 60 LLVHWKDC-LVRGVQSMIKLGSSSLFIIMWSCFLSLT 95 (341)
Q Consensus 60 ~~~~w~~~-~~rg~~s~~~~g~~~~~~~~w~~~~s~~ 95 (341)
.+..|.-| ..+.-.+-.+..--..|.+.....++.+
T Consensus 52 ~~~~~l~~~~~~~~~~~~~~~ll~~ft~~~g~~l~~~ 88 (212)
T cd06181 52 GLVILLFCCRIKRRSSPANLILLFLFTALMGVTLGPI 88 (212)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555 4444445555555555555555555443
No 92
>KOG4740 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.44 E-value=1.6e+02 Score=31.98 Aligned_cols=53 Identities=34% Similarity=0.335 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHH
Q 048085 80 SSSLFIIMWSCFLSLTSMSCLLYVLLSMGAAGAAVRYLGYT-PGLFIVGLFAILV 133 (341)
Q Consensus 80 ~~~~~~~~w~~~~s~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~v~~~~~~~ 133 (341)
+..+|+-+|+-+.|++|| ++.++|....=-.++..-+|++ .-++.++++++++
T Consensus 344 ~~GlF~Gi~~li~s~Isi-~~~~il~~~~~~~~A~~v~~~~~l~~f~~a~la~l~ 397 (564)
T KOG4740|consen 344 SVGLFLGIALLIGSFISI-ALFNILCSEDNPRAADYVVGITDLLLFVVALLACLF 397 (564)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHcCCCchhhHhhhhHHHHHHHHHHHHHHHH
Confidence 456888899999999886 5888898888877888889999 8899999998765
No 93
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=20.25 E-value=1.9e+02 Score=28.12 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=46.9
Q ss_pred hhhhhHhHHHHhhhHHHHHHHHHhhhhhhhhhhHHHhhchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Q 048085 41 RHWPMVCSGCAKSGALLLLLLVHWKDCLVRGVQSMIKLGSSSLFIIMWSCFLSLTSMSC-LLYVLLSMGAAGAAVRYLGY 119 (341)
Q Consensus 41 ~~~p~v~~~~~~~~~~~~~~~~~w~~~~~rg~~s~~~~g~~~~~~~~w~~~~s~~~~~~-~~~~l~~~~~~~~~~~~~g~ 119 (341)
---|++..|++..|-++.-+++. .++|+--| .-.+|.| ++.. ..=..+.-++.-+|.
T Consensus 24 ~gDg~~fQw~~~~~i~~~g~~v~----~~~~~p~f-----------------~p~amlgG~lW~-~gN~~~vpii~~iGL 81 (254)
T PF07857_consen 24 TGDGFFFQWVMCSGIFLVGLVVN----LILGFPPF-----------------YPWAMLGGALWA-TGNILVVPIIKTIGL 81 (254)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHH----HhcCCCcc-----------------eeHHHhhhhhhh-cCceeehhHhhhhhh
Confidence 33588889998888765333211 12333211 2223333 2221 122234567788999
Q ss_pred chhHHHHHHHHHHHHHHHhhh
Q 048085 120 TPGLFIVGLFAILVLWMFANF 140 (341)
Q Consensus 120 ~~~~~~v~~~~~~~lw~y~~f 140 (341)
.+|.+|-+-+-+++=|..|-|
T Consensus 82 glg~liW~s~n~l~Gw~~grf 102 (254)
T PF07857_consen 82 GLGMLIWGSVNCLTGWASGRF 102 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999998877666
Done!