BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048090
         (447 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|356509543|ref|XP_003523507.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 472

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/445 (63%), Positives = 344/445 (77%), Gaps = 2/445 (0%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA    TG+L +   +  ++L+  Y  C    NL +L N  K +N  NPL FN +ISDF
Sbjct: 25  LHAQLLRTGMLFLSHNL-HTQLIATYAACLPNNNLQSLNNFFKCMNSTNPLHFNAIISDF 83

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
           CR G P  AL +FSF+H +G+ LDTYALCS+LTAS+ VKD   GKQ+ AHV KSGW SSV
Sbjct: 84  CRKGLPFLALASFSFVHANGVPLDTYALCSTLTASSKVKDLNLGKQIHAHVAKSGWSSSV 143

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
           FVGSALID Y+KL  + DA  MFDEIP KN+VCANALLSGY EA LW   L+LVR MP L
Sbjct: 144 FVGSALIDFYSKLSNVKDAAHMFDEIPEKNTVCANALLSGYAEAGLWVQELQLVRKMPVL 203

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            L +DHFTLSA LRAC GLSA E GRQVH Y++R   ++ +DVF+QS+L+EMYGKCGLV 
Sbjct: 204 KLKHDHFTLSAALRACTGLSAVEMGRQVHGYLLRTTPDIESDVFLQSALVEMYGKCGLVK 263

Query: 242 KALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
           KA QVF L G  +  E+ ++DVVLWTSMLGVYGRNG++KEVI LY+ ML+ G +PD +AF
Sbjct: 264 KAWQVFKLVGMEIRKEVRSRDVVLWTSMLGVYGRNGHYKEVIDLYDEMLVEGIRPDGIAF 323

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           +TVIS C HTGQV  G++YFE M +D+KL+PGPEHYSCLVDLLCRAGEL +AW+L+NE L
Sbjct: 324 LTVISTCGHTGQVHAGVKYFESMANDFKLDPGPEHYSCLVDLLCRAGELQRAWELLNETL 383

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +G G+ SVSMWGALLSAC D G  +LGKLAAQ+ALELDP NVGI +MLSNLYA+F MW+
Sbjct: 384 YKGMGNCSVSMWGALLSACVDRGDLDLGKLAAQRALELDPQNVGICIMLSNLYARFGMWE 443

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
           EIG LR L+K +GLKKDVGCSW++V
Sbjct: 444 EIGHLRVLIKARGLKKDVGCSWVQV 468


>gi|357467465|ref|XP_003604017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493065|gb|AES74268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 742

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 281/446 (63%), Positives = 340/446 (76%), Gaps = 3/446 (0%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCL-KFLNPRNPLPFNVVISD 60
           +HAH    G L I L    ++L+  YT+     NL TLTN   K +N  NPL FNV+IS 
Sbjct: 213 LHAHLLTKGTLFI-LHDLHTQLISTYTSFFPSNNLQTLTNSFFKCMNSTNPLHFNVIISH 271

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           FCR G P  AL TFSFMH + + LDTYALCS+LTAS+  KD  FGKQ+ AHV KSGW SS
Sbjct: 272 FCRKGFPFLALTTFSFMHTNHVPLDTYALCSTLTASSKFKDVNFGKQIHAHVEKSGWSSS 331

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           VFVGSALID Y+KLL + DA L+FDEIP +N+VCANALLSGYCE  LW    EL+R MP 
Sbjct: 332 VFVGSALIDFYSKLLNVKDAALVFDEIPDRNTVCANALLSGYCEFGLWVKAFELIRKMPL 391

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
           L L YDHFTLSA LRAC GLS+ E GRQ+H+Y++R   ++ +DVF+QS+LIEMYGKCG+V
Sbjct: 392 LKLKYDHFTLSAALRACTGLSSVEMGRQLHSYLLRTMADIESDVFLQSTLIEMYGKCGMV 451

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            KA  VF L G  +  E ++DVV WTSMLGVYG+NG++KEVI LY  ML  G KPD ++F
Sbjct: 452 EKAQLVFKLDGMDIRKERSRDVVFWTSMLGVYGKNGHYKEVIDLYSEMLREGIKPDGISF 511

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           +T+ISAC HTGQV  G++YFE M +D+KL+PGPEHYSCLVDLLCRAGEL+KAW+L+NE  
Sbjct: 512 LTIISACGHTGQVDAGVKYFESMTNDFKLDPGPEHYSCLVDLLCRAGELNKAWELLNETC 571

Query: 361 -DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419
             +G G+ SVSMWGALLSAC D G  ELGKLAAQ+ALELDP N GI VMLSN+YA+  MW
Sbjct: 572 HHKGIGNCSVSMWGALLSACVDSGNIELGKLAAQRALELDPQNAGICVMLSNVYARLGMW 631

Query: 420 DEIGQLRELMKEKGLKKDVGCSWIEV 445
           DEIG+LR L+ ++GL+KDVGCSW++ 
Sbjct: 632 DEIGRLRVLINQRGLRKDVGCSWVQT 657


>gi|297744703|emb|CBI37965.3| unnamed protein product [Vitis vinifera]
          Length = 371

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/370 (71%), Positives = 310/370 (83%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           MH +G+ LDTY+ C SL AS S+K+ +FG Q+ A V KSGWLSSVFVGSAL+D+YAKL L
Sbjct: 1   MHTNGVPLDTYSFCCSLVASCSMKNVKFGAQIHARVEKSGWLSSVFVGSALVDMYAKLSL 60

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I+DA ++FDEIPVKN+VCANALLSGY EAKLW  GL+ VR M +L L+ DHFTLSA+LR+
Sbjct: 61  INDAAMVFDEIPVKNTVCANALLSGYGEAKLWVEGLDFVRKMRSLNLNCDHFTLSAMLRS 120

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CAGLSA E GRQVH  +IRK  ++  DVF+QSSLIEMYGKCG V KA QVFNLAG   +G
Sbjct: 121 CAGLSAIELGRQVHGSVIRKVSDVEADVFLQSSLIEMYGKCGSVEKAWQVFNLAGFGYKG 180

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           E  +DVVLWTSML V GRNG+F++VI+LY+ ML  G +PD VAFVTVISAC HTG VKLG
Sbjct: 181 ERKRDVVLWTSMLAVCGRNGHFEKVIELYKEMLREGIRPDGVAFVTVISACGHTGHVKLG 240

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           I+YFE MV D+ LEPGPEHYSC+VDLLCRAGEL+KAWK++NEM  + +GS S+SMWGALL
Sbjct: 241 IKYFESMVSDFGLEPGPEHYSCVVDLLCRAGELEKAWKMVNEMTLKENGSYSISMWGALL 300

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           +AC++ G  ELGKLAA KALE+DPHNVGIYV+LSN+YAKF MWDEIGQLRELMKE GLKK
Sbjct: 301 NACNEFGNVELGKLAAHKALEMDPHNVGIYVLLSNMYAKFSMWDEIGQLRELMKESGLKK 360

Query: 437 DVGCSWIEVT 446
           DVG SWIE+T
Sbjct: 361 DVGRSWIEIT 370


>gi|255543909|ref|XP_002513017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548028|gb|EEF49520.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 349

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/348 (71%), Positives = 290/348 (83%)

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           +K+  FG+Q+ AHV KSGWLSSVFVGSALIDLY+KL    DA  +FDEIPVKN+VCANAL
Sbjct: 1   MKNVNFGEQIHAHVIKSGWLSSVFVGSALIDLYSKLSFPSDAATVFDEIPVKNTVCANAL 60

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           LSGY EAKLW  G+EL++ MP L LDYD+FTLSA+LR  AGLSA EFG+QVHAY+IRK  
Sbjct: 61  LSGYIEAKLWYQGVELIKEMPFLSLDYDNFTLSAMLRISAGLSAIEFGKQVHAYLIRKIY 120

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           ++ NDVFMQSSLIEMYGKCG V KALQV N AG R   + NKD+VLWTSMLGVYGRNG+F
Sbjct: 121 DVENDVFMQSSLIEMYGKCGYVGKALQVLNFAGFRPGRKRNKDIVLWTSMLGVYGRNGHF 180

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           +EVI L+E ML  G +PD VA+VTVISAC HTGQV+LGIEYFE M  D+ L P PEHYSC
Sbjct: 181 EEVISLFEEMLKEGVRPDGVAYVTVISACGHTGQVQLGIEYFESMSRDFNLTPSPEHYSC 240

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +VDL CRAGELD+AWKL+NEML +GH   S+SMWGA+LSAC + G  E GKLAA++AL+L
Sbjct: 241 VVDLFCRAGELDRAWKLVNEMLTKGHEIHSISMWGAVLSACEEHGNIEFGKLAAREALKL 300

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +P NVGIYVMLSNLYA+F MWDEI  LR++MK++GLKKDVGCSWIE+T
Sbjct: 301 EPQNVGIYVMLSNLYARFGMWDEIDHLRKIMKDRGLKKDVGCSWIEIT 348



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 55/281 (19%), Positives = 113/281 (40%), Gaps = 23/281 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HAH  ++G L    +   S L+  Y+      +  T+ + +     +N +  N ++S 
Sbjct: 9   QIHAHVIKSGWL--SSVFVGSALIDLYSKLSFPSDAATVFDEIPV---KNTVCANALLSG 63

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW--L 118
           +         ++    M    +  D + L + L  S  +    FGKQV A++ +  +   
Sbjct: 64  YIEAKLWYQGVELIKEMPFLSLDYDNFTLSAMLRISAGLSAIEFGKQVHAYLIRKIYDVE 123

Query: 119 SSVFVGSALIDLYAK-------LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           + VF+ S+LI++Y K       L +++ A         K+ V   ++L  Y     +   
Sbjct: 124 NDVFMQSSLIEMYGKCGYVGKALQVLNFAGFRPGRKRNKDIVLWTSMLGVYGRNGHFEEV 183

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           + L   M   G+  D      ++ AC      + G +    M R   NL       S ++
Sbjct: 184 ISLFEEMLKEGVRPDGVAYVTVISACGHTGQVQLGIEYFESMSRD-FNLTPSPEHYSCVV 242

Query: 232 EMYGKCGLVTKALQVFN---LAGHRLEGEINKDVVLWTSML 269
           +++ + G + +A ++ N     GH +       + +W ++L
Sbjct: 243 DLFCRAGELDRAWKLVNEMLTKGHEIH-----SISMWGAVL 278


>gi|225427824|ref|XP_002275925.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Vitis vinifera]
          Length = 349

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/348 (72%), Positives = 294/348 (84%)

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           +K+ +FG Q+ A V KSGWLSSVFVGSAL+D+YAKL LI+DA ++FDEIPVKN+VCANAL
Sbjct: 1   MKNVKFGAQIHARVEKSGWLSSVFVGSALVDMYAKLSLINDAAMVFDEIPVKNTVCANAL 60

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           LSGY EAKLW  GL+ VR M +L L+ DHFTLSA+LR+CAGLSA E GRQVH  +IRK  
Sbjct: 61  LSGYGEAKLWVEGLDFVRKMRSLNLNCDHFTLSAMLRSCAGLSAIELGRQVHGSVIRKVS 120

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           ++  DVF+QSSLIEMYGKCG V KA QVFNLAG   +GE  +DVVLWTSML V GRNG+F
Sbjct: 121 DVEADVFLQSSLIEMYGKCGSVEKAWQVFNLAGFGYKGERKRDVVLWTSMLAVCGRNGHF 180

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           ++VI+LY+ ML  G +PD VAFVTVISAC HTG VKLGI+YFE MV D+ LEPGPEHYSC
Sbjct: 181 EKVIELYKEMLREGIRPDGVAFVTVISACGHTGHVKLGIKYFESMVSDFGLEPGPEHYSC 240

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +VDLLCRAGEL+KAWK++NEM  + +GS S+SMWGALL+AC++ G  ELGKLAA KALE+
Sbjct: 241 VVDLLCRAGELEKAWKMVNEMTLKENGSYSISMWGALLNACNEFGNVELGKLAAHKALEM 300

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           DPHNVGIYV+LSN+YAKF MWDEIGQLRELMKE GLKKDVG SWIE+T
Sbjct: 301 DPHNVGIYVLLSNMYAKFSMWDEIGQLRELMKESGLKKDVGRSWIEIT 348


>gi|449458644|ref|XP_004147057.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 469

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/445 (56%), Positives = 323/445 (72%), Gaps = 4/445 (0%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HAH   T        +  S+L+L Y+      +  +L    + + PR  L FNV+ISDF
Sbjct: 28  IHAHLLRTHFQFFSPNL-HSKLILSYSQIIPNFDAKSLNGIFQCIIPRTSLTFNVMISDF 86

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            R+G   +AL  FSFMH +G+ +DTYALCSSL   + V++  +GKQ+ A V KSGWL SV
Sbjct: 87  SRHGFQDFALMGFSFMHSNGVPIDTYALCSSLNGCSFVQNVVYGKQIHAFVGKSGWLCSV 146

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
           FVGSA++D+YAK  LI+DA  +FDE+P+KN+VCANALL+GY EA++W  GLEL+R M  L
Sbjct: 147 FVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQGL 206

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            L YD FTLSA LRAC GLSA   G+QVHAY++R   ++ +DV +QS+L+EMYGK G+V 
Sbjct: 207 DLKYDQFTLSASLRACTGLSAIALGKQVHAYILRTVYDITSDVHLQSTLVEMYGKNGMVE 266

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           KA  VF  AG   + +  +D+++WTSML VYGRNG +K VI+LY  MLM G KPD VAFV
Sbjct: 267 KAWNVFKFAGLGRQEDGKRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGIKPDRVAFV 326

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           TVISAC HTG+V LG++YF+ M  D+ LEPG EHYSCL DLLCRAGEL+KAWKL+N++  
Sbjct: 327 TVISACGHTGEVNLGVQYFDSMQSDFGLEPGQEHYSCLADLLCRAGELEKAWKLVNDIKS 386

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           R +   +VS+WGALL AC + G  +LG LAA++ALELDP N GI VMLSNLYA F +W+E
Sbjct: 387 RDY---NVSLWGALLRACLEQGNIKLGNLAARRALELDPQNTGILVMLSNLYAGFGLWNE 443

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVT 446
           I  LRE ++++GL KDV CSWIE+T
Sbjct: 444 IEHLRESVRKEGLYKDVACSWIEIT 468


>gi|449489793|ref|XP_004158417.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g18750, chloroplastic-like [Cucumis sativus]
          Length = 497

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/445 (55%), Positives = 321/445 (72%), Gaps = 4/445 (0%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HAH   T        +  S+L+L Y+      +  +L    + + PR  L FNV+ISDF
Sbjct: 56  IHAHLLRTHFQFFSPNL-HSKLILSYSQIIPNFDAKSLNGIFQCIIPRTSLTFNVMISDF 114

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            R+G   +AL  FSFMH +G+ +DTYALCSSL   +  +   +GKQ+ A V KSGWL SV
Sbjct: 115 SRHGFQDFALMGFSFMHSNGVPIDTYALCSSLNGCSLFRXVVYGKQIHAFVGKSGWLCSV 174

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
           FVGSA++D+YAK  LI+DA  +FDE+P+KN+VCANALL+GY EA++W  GLEL+R M  L
Sbjct: 175 FVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQGL 234

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            L YD FTLSA LRAC GLSA   G+QVHAY++R   ++ +DV +QS+L+EMYGK G+V 
Sbjct: 235 DLKYDQFTLSASLRACTGLSAIALGKQVHAYILRTVYDITSDVHLQSTLVEMYGKNGMVE 294

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           KA  VF  AG   + +  +D+++WTSML VYGRNG +K VI+LY  MLM G KPD VAFV
Sbjct: 295 KAWNVFKFAGLGRQEDGKRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGIKPDRVAFV 354

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           TVISAC HTG+V LG++YF+ M  D+ LEPG EHYSCL DLLCRAGEL+KAWKL+N++  
Sbjct: 355 TVISACGHTGEVNLGVQYFDSMQSDFGLEPGQEHYSCLADLLCRAGELEKAWKLVNDIKS 414

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           R +   +VS+WGALL AC + G  +LG LAA++ALELDP N GI VMLSNLYA F +W+E
Sbjct: 415 RDY---NVSLWGALLRACLEQGNIKLGNLAARRALELDPQNTGILVMLSNLYAGFGLWNE 471

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVT 446
           I  LRE ++++GL KDV CSWIE+T
Sbjct: 472 IEHLRESVRKEGLYKDVACSWIEIT 496


>gi|359477366|ref|XP_002279703.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 327

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/339 (64%), Positives = 259/339 (76%), Gaps = 25/339 (7%)

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           +K+ +FG Q+ A V KS                          ++FDEIPVKN+VCANAL
Sbjct: 1   MKNVKFGAQIHARVEKSA-------------------------MVFDEIPVKNTVCANAL 35

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           LSGY EAKLW  GL+ VR M +L L+ DHFTLSA+LR+CAGLSA E G+QVH  +IRK  
Sbjct: 36  LSGYGEAKLWVEGLDFVRRMRSLNLNCDHFTLSAMLRSCAGLSAIELGKQVHGSVIRKVS 95

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           ++  DVF+QSSLIEMYGKCG V KA +VFNLAG   +GE  +DVVLWTSML V GRNG+F
Sbjct: 96  DVEADVFLQSSLIEMYGKCGSVEKAWEVFNLAGFGYKGERKRDVVLWTSMLAVCGRNGHF 155

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           ++VI+LY+ ML  G +PD VAFVT+ISAC HTG VKLGIEYFE MV D+ LEP PE+Y C
Sbjct: 156 EKVIELYKEMLREGIRPDGVAFVTIISACGHTGHVKLGIEYFESMVSDFGLEPRPEYYRC 215

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +VDLLCRAGEL+KAWK++NEM  + +GS S+SMWGALL+AC++ G  ELGKLAA KALE+
Sbjct: 216 VVDLLCRAGELEKAWKMVNEMTSKENGSYSISMWGALLNACNEFGNVELGKLAAHKALEM 275

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           DPHNVGIYV+LSN+YAKF MWDEI QLRELMKE GLKKD
Sbjct: 276 DPHNVGIYVLLSNMYAKFSMWDEIEQLRELMKESGLKKD 314


>gi|357146090|ref|XP_003573872.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Brachypodium distachyon]
          Length = 429

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/403 (46%), Positives = 256/403 (63%), Gaps = 17/403 (4%)

Query: 51  PLPFNVVISDFCRNGSPLY---ALKTFSFMHVHGIF---LDTYALCSSLTASTSVKDARF 104
           PL FN +++    + SP      L   +  H +      +D+Y LCS+L  +T+ +    
Sbjct: 32  PLSFNSLLAAAASSPSPRLRSLVLPALALAHRYPAAAGPIDSYTLCSALRHATADE---- 87

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
              + A   +SGWL SVFV  AL   Y       DA  +FDE PV+N V  NA+L+GY  
Sbjct: 88  ASPLHALAARSGWLGSVFVSCALAACYGGSGRSLDARRLFDESPVRNGVFGNAVLAGYVG 147

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--N 222
           A +WA  LE  R  P LGL  D +T++A++RAC   + A+ G + H + IR+    G  +
Sbjct: 148 AGMWAPALEFARRFPELGLPADGYTMTAVVRACGETANADLGAEAHGHAIRRATGGGMES 207

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DVF+ S+L++MYGKCGLV +A  VF LA  R +     DVVLWT+M+  YGR+G  KEVI
Sbjct: 208 DVFLSSALVDMYGKCGLVGRAELVFELARRRADA-CGGDVVLWTAMMNAYGRHGQCKEVI 266

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           ++Y+ M+  G  PDE+A + V+SAC H G+V  G++YFE M  DY+L P PEHY C+V++
Sbjct: 267 RMYDQMVTLGVWPDELAILAVLSACQHAGEVIKGLQYFESMRADYELVPTPEHYGCVVNM 326

Query: 343 LCRAGELDKAWKLINEMLDRGHGSS-SVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           LCRAG++ KAW++       G GS   VS WGALLSAC D G  E GK+AAQKA+EL+P 
Sbjct: 327 LCRAGDVAKAWEITTR---EGCGSDIGVSTWGALLSACRDRGDVEFGKMAAQKAIELEPT 383

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           NVGIYV LSNLYA+  +W+EI  LRE+MK+KG +K VGC+W+E
Sbjct: 384 NVGIYVELSNLYARAGLWEEIDDLREVMKDKGFEKHVGCTWVE 426


>gi|242060330|ref|XP_002451454.1| hypothetical protein SORBIDRAFT_04g002230 [Sorghum bicolor]
 gi|241931285|gb|EES04430.1| hypothetical protein SORBIDRAFT_04g002230 [Sorghum bicolor]
          Length = 430

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 238/366 (65%), Gaps = 10/366 (2%)

Query: 78  HVHG-IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           H  G + LD+YALCS+L ++ S  D      + A  +KSGWL SVFV  AL   Y     
Sbjct: 65  HASGRVPLDSYALCSALRSTPSAAD-----TLHALASKSGWLGSVFVSCALAASYGGSGR 119

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
             DA  +FDE P KN V  NA+L+ Y  A  W   L   R    L L  D +T++A++RA
Sbjct: 120 YQDARKLFDESPSKNGVFGNAVLAAYVGAAKWVPVLGFARRFSELQLQVDGYTMTAVVRA 179

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C  ++ A+ G Q H + IR+   +  DVF+ S+ ++MY KCGL+++A  VF LA     G
Sbjct: 180 CGEVANADLGVQAHGHAIRRLGGIEVDVFLVSAFVDMYAKCGLISQAECVFGLAQQETGG 239

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               DVVLWT+ML  Y R+G  KEVI++Y+ M+ +G  PDE+A + V+SAC H G+V  G
Sbjct: 240 R--GDVVLWTAMLNAYARHGQCKEVIRMYDLMVASGVYPDELAMLAVLSACQHAGEVVKG 297

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           + YFE M  DY L P PEHY C+V++LCRAGE+ KAW++  +  D    +  VS WGALL
Sbjct: 298 LNYFESMHADYGLVPTPEHYGCVVNMLCRAGEVTKAWEIATK--DGCDCAIGVSTWGALL 355

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           SAC  C   E+G++AAQKA+ELDP NVGIY+ LSNLYA+ C+WD+I QLRE+MKEKGL+K
Sbjct: 356 SACQACLNVEVGRMAAQKAIELDPTNVGIYIELSNLYARACLWDDIDQLREVMKEKGLEK 415

Query: 437 DVGCSW 442
           DVGC+W
Sbjct: 416 DVGCTW 421


>gi|115443945|ref|NP_001045752.1| Os02g0126500 [Oryza sativa Japonica Group]
 gi|41053073|dbj|BAD08017.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113535283|dbj|BAF07666.1| Os02g0126500 [Oryza sativa Japonica Group]
 gi|125537906|gb|EAY84301.1| hypothetical protein OsI_05679 [Oryza sativa Indica Group]
 gi|125580654|gb|EAZ21585.1| hypothetical protein OsJ_05212 [Oryza sativa Japonica Group]
          Length = 427

 Score =  347 bits (889), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 172/364 (47%), Positives = 247/364 (67%), Gaps = 10/364 (2%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           LD+YALCS+L  +++ +     + + AH  +SGWL SVFV  A+   Y       DA  +
Sbjct: 72  LDSYALCSALRHASAPE----AEPLHAHAARSGWLGSVFVSCAIAAAYGGSGRFLDARRL 127

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           FDE PV+N+V  NA+L+GY  A  WA  LE  R    L L  D +T++A++RAC  L+ A
Sbjct: 128 FDESPVRNAVFGNAVLAGYVNAGKWAPLLEFARRFSELRLQVDGYTMTAVVRACGELADA 187

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           + G Q H + IR+   + +DVF+ S+L++MY KCGLV+ A +VF+LA  +    +  DVV
Sbjct: 188 DLGGQAHGHAIRRVGAVESDVFLTSALVDMYAKCGLVSHAKRVFDLA--QQVNAVGIDVV 245

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
           LWT++L  YGR+G  KEVI++Y+ M+ +G +PDE+  + V+SAC H G+V  G+ YFE +
Sbjct: 246 LWTALLNAYGRHGMCKEVIQIYDRMVASGVRPDELTILAVLSACQHAGEVVKGLHYFESI 305

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS-SVSMWGALLSACHDC 382
             DY L P P+H+SC+V++LCRAG + KAW+++     +G G    +S W ALLSAC DC
Sbjct: 306 HEDYGLTPTPDHFSCVVNMLCRAGMVIKAWEIVT---SKGCGGEFGISTWVALLSACCDC 362

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
           G  ELG++AAQ+A+EL+P+N  IYV LSNLYA+F +W EI QLRELMK+ GL+KD G +W
Sbjct: 363 GNVELGRMAAQRAIELEPNNGTIYVELSNLYARFGLWGEIDQLRELMKDNGLEKDAGLTW 422

Query: 443 IEVT 446
           +E++
Sbjct: 423 VELS 426


>gi|413920682|gb|AFW60614.1| hypothetical protein ZEAMMB73_109805 [Zea mays]
 gi|413935404|gb|AFW69955.1| hypothetical protein ZEAMMB73_063258 [Zea mays]
          Length = 422

 Score =  343 bits (881), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 175/364 (48%), Positives = 236/364 (64%), Gaps = 9/364 (2%)

Query: 82  IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE 141
           + LD+YALCS+L ++ S         + A   KSGWL SVFV  AL   Y       DA 
Sbjct: 66  VSLDSYALCSALRSAPSA-----AGTLHALAAKSGWLGSVFVSCALAASYGGSGRCLDAR 120

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            +FDE P +N V  NA+L+ Y  A  WA  L   R    L L  D +T++A+ RAC  ++
Sbjct: 121 SLFDESPARNGVFGNAVLAAYVGAAEWAPVLRFARRFSELRLQVDWYTMTAVARACGEVA 180

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
            A+ G Q H + +R+   +  DVF+ S+ ++MY KCGL+++A +VF LA     G    D
Sbjct: 181 NADLGVQAHGHAVRRLGGVEVDVFLVSAFVDMYAKCGLISQAERVFRLAQQETGGR--GD 238

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           VVLWT+ML  Y R+G  KEVI+ Y+ ML +G  PDE+A + V+SAC H G+V  G+ YFE
Sbjct: 239 VVLWTAMLNAYARHGQCKEVIRQYDLMLASGVYPDELAMLAVLSACQHAGEVVKGLNYFE 298

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            M  DY L P PEHY C+V++LCRAGE+ KAW++  +  D    +  VS WGALLSAC  
Sbjct: 299 SMHADYGLVPTPEHYGCVVNMLCRAGEVTKAWEIATK--DGCDHAIGVSTWGALLSACQV 356

Query: 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCS 441
               E+G++AAQKA+ELDP NVGIY+ LSNLYA+ C+WD+I QLRE+MKE+GL+KDVGC+
Sbjct: 357 RLNVEVGRMAAQKAIELDPTNVGIYIELSNLYARACLWDDIDQLREVMKERGLEKDVGCT 416

Query: 442 WIEV 445
           W+E+
Sbjct: 417 WVEL 420


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 163/446 (36%), Positives = 252/446 (56%), Gaps = 17/446 (3%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHA  F  G      +  Q+ L+  Y  CR      T+   L  L  R  + +  ++S +
Sbjct: 141 VHAQVFRLGFEADVFV--QNGLIALYAKCRRLGCARTVFEGLP-LPERTIVSWTAIVSAY 197

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +NG P+ AL+ FS M    +  D  AL S L A T ++D   G+ + A V K G  +  
Sbjct: 198 AQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEP 257

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            +  +L  +YAK   +  A+++FD++   N +  NA++SGY +       ++L   M   
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINK 317

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            +  D  ++++ + ACA + + E  R +  Y+ R   +  +DVF+ S+LI+M+ KCG V 
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARWMDEYVSRS--DYRDDVFISSALIDMFAKCGSVE 375

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A  VF+         +++DVV+W++M+  YG +G  +E I LY AM  +G  P++V F+
Sbjct: 376 CARSVFDRT-------LDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFL 428

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            ++ AC+H+G V+ G  +F  M  D+K+ P  +HY+C++DLL RAG LD+A+++I  M  
Sbjct: 429 GLLIACNHSGMVREGWWFFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPV 487

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +      V++WGALLSAC      ELGK AAQ+   +DP N G YV LSNLYA   +WD 
Sbjct: 488 Q----PGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDR 543

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
           + ++R  MKEKGL KDVGCSW+EV G
Sbjct: 544 VAEVRVRMKEKGLNKDVGCSWVEVRG 569



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 159/337 (47%), Gaps = 28/337 (8%)

Query: 48  PRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PR  + P+N +I  + RN     AL  +S M +  +  D++     L A   +   + G+
Sbjct: 80  PRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGR 139

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGYCE 164
            V A V + G+ + VFV + LI LYAK   +  A  +F+ +P+  +  V   A++S Y +
Sbjct: 140 FVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQ 199

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  LE+   M  + +  D   L ++L A   L   E GR +HA +++       D+
Sbjct: 200 NGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDL 259

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            +  SL  MY KCG V  A  +F+          + +++LW +M+  Y +NG+ K+ I L
Sbjct: 260 LI--SLNTMYAKCGQVATAKILFDKMK-------SPNLILWNAMISGYAKNGFAKDAIDL 310

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-----DYKLEPGPEHYSCL 339
           +  M+    +PD ++  + ISAC+  G     +E   WM       DY+ +      S L
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVG----SLEQARWMDEYVSRSDYRDDVFIS--SAL 364

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +D+  + G ++ A  + +  LDR      V +W A++
Sbjct: 365 IDMFAKCGSVECARSVFDRTLDR-----DVVVWSAMI 396



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 127/272 (46%), Gaps = 13/272 (4%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ A +   G   S F+ + LI   +    I  A  +FD++P       NA++ GY   
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +   L +   M    +  D FT   LL+AC GLS  + GR VHA + R       DVF
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFR--LGFEADVF 155

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q+ LI +Y KC  +  A  VF   G  L     + +V WT+++  Y +NG   E ++++
Sbjct: 156 VQNGLIALYAKCRRLGCARTVFE--GLPLP---ERTIVSWTAIVSAYAQNGEPVEALEIF 210

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M     KPD VA V+V++A +    ++ G       V    LE  P+    L  +  +
Sbjct: 211 SQMRKMDVKPDCVALVSVLNAFTCLQDLEQG-RSIHASVMKMGLETEPDLLISLNTMYAK 269

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            G++  A  L ++M      S ++ +W A++S
Sbjct: 270 CGQVATAKILFDKM-----KSPNLILWNAMIS 296


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 161/446 (36%), Positives = 253/446 (56%), Gaps = 17/446 (3%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHA  F  G      +  Q+ L+  Y  CR   +  T+   L  L  R  + +  ++S +
Sbjct: 141 VHAQVFRLGF--DADVFVQNGLIALYAKCRRLGSARTVFEGLP-LPERTIVSWTAIVSAY 197

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +NG P+ AL+ FS M    +  D  AL S L A T ++D + G+ + A V K G     
Sbjct: 198 AQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            +  +L  +YAK   +  A+++FD++   N +  NA++SGY +       +++   M   
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            +  D  ++++ + ACA + + E  R ++ Y+ R   +  +DVF+ S+LI+M+ KCG V 
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRS--DYRDDVFISSALIDMFAKCGSVE 375

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A  VF+         +++DVV+W++M+  YG +G  +E I LY AM   G  P++V F+
Sbjct: 376 GARLVFDRT-------LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFL 428

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            ++ AC+H+G V+ G  +F  M  D+K+ P  +HY+C++DLL RAG LD+A+++I  M  
Sbjct: 429 GLLMACNHSGMVREGWWFFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPV 487

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +      V++WGALLSAC      ELG+ AAQ+   +DP N G YV LSNLYA   +WD 
Sbjct: 488 Q----PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDR 543

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
           + ++R  MKEKGL KDVGCSW+EV G
Sbjct: 544 VAEVRVRMKEKGLNKDVGCSWVEVRG 569



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 163/333 (48%), Gaps = 20/333 (6%)

Query: 48  PRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PR  + P+N +I  + RN     AL  +S M +  +  D++     L A + +   + G+
Sbjct: 80  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGYCE 164
            V A V + G+ + VFV + LI LYAK   +  A  +F+ +P+  +  V   A++S Y +
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQ 199

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  LE+   M  + +  D   L ++L A   L   + GR +HA +++    +  D+
Sbjct: 200 NGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL 259

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            +  SL  MY KCG V  A  +F+          + +++LW +M+  Y +NGY +E I +
Sbjct: 260 LI--SLNTMYAKCGQVATAKILFDKMK-------SPNLILWNAMISGYAKNGYAREAIDM 310

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM-VHDYKLEPGPEHYSCLVDLL 343
           +  M+    +PD ++  + ISAC+  G ++     +E++   DY+ +      S L+D+ 
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMF 368

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            + G ++ A  + +  LDR      V +W A++
Sbjct: 369 AKCGSVEGARLVFDRTLDR-----DVVVWSAMI 396



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 133/278 (47%), Gaps = 25/278 (8%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC-- 163
           KQ+ A +   G   S F+ + LI   +    I  A  +FD++P       NA++ GY   
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 164 ----EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
               +A L    ++L R+ P      D FT   LL+AC+GLS  + GR VHA + R    
Sbjct: 98  NHFQDALLMYSNMQLARVSP------DSFTFPHLLKACSGLSHLQMGRFVHAQVFR--LG 149

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
              DVF+Q+ LI +Y KC  +  A  VF   G  L     + +V WT+++  Y +NG   
Sbjct: 150 FDADVFVQNGLIALYAKCRRLGSARTVFE--GLPLP---ERTIVSWTAIVSAYAQNGEPM 204

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E ++++  M     KPD VA V+V++A +    +K G      +V    LE  P+    L
Sbjct: 205 EALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVV-KMGLEIEPDLLISL 263

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             +  + G++  A  L ++M      S ++ +W A++S
Sbjct: 264 NTMYAKCGQVATAKILFDKM-----KSPNLILWNAMIS 296


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  277 bits (708), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 161/446 (36%), Positives = 253/446 (56%), Gaps = 17/446 (3%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHA  F  G      +  Q+ L+  Y  CR   +  T+   L  L  R  + +  ++S +
Sbjct: 141 VHAQVFRLGF--DADVFVQNGLIALYAKCRRLGSARTVFEGLP-LPERTIVSWTAIVSAY 197

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +NG P+ AL+ FS M    +  D  AL S L A T ++D + G+ + A V K G     
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            +  +L  +YAK   +  A+++FD++   N +  NA++SGY +       +++   M   
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            +  D  ++++ + ACA + + E  R ++ Y+ R   +  +DVF+ S+LI+M+ KCG V 
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRS--DYRDDVFISSALIDMFAKCGSVE 375

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A  VF+         +++DVV+W++M+  YG +G  +E I LY AM   G  P++V F+
Sbjct: 376 GARLVFDRT-------LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFL 428

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            ++ AC+H+G V+ G  +F  M  D+K+ P  +HY+C++DLL RAG LD+A+++I  M  
Sbjct: 429 GLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPV 487

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +      V++WGALLSAC      ELG+ AAQ+   +DP N G YV LSNLYA   +WD 
Sbjct: 488 Q----PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDR 543

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
           + ++R  MKEKGL KDVGCSW+EV G
Sbjct: 544 VAEVRVRMKEKGLNKDVGCSWVEVRG 569



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 163/333 (48%), Gaps = 20/333 (6%)

Query: 48  PRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PR  + P+N +I  + RN     AL  +S M +  +  D++     L A + +   + G+
Sbjct: 80  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGYCE 164
            V A V + G+ + VFV + LI LYAK   +  A  +F+ +P+  +  V   A++S Y +
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQ 199

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  LE+   M  + +  D   L ++L A   L   + GR +HA +++    +  D+
Sbjct: 200 NGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL 259

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            +  SL  MY KCG V  A  +F+          + +++LW +M+  Y +NGY +E I +
Sbjct: 260 LI--SLNTMYAKCGQVATAKILFDKMK-------SPNLILWNAMISGYAKNGYAREAIDM 310

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM-VHDYKLEPGPEHYSCLVDLL 343
           +  M+    +PD ++  + ISAC+  G ++     +E++   DY+ +      S L+D+ 
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMF 368

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            + G ++ A  + +  LDR      V +W A++
Sbjct: 369 AKCGSVEGARLVFDRTLDR-----DVVVWSAMI 396



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 133/278 (47%), Gaps = 25/278 (8%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC-- 163
           KQ+ A +   G   S F+ + LI   +    I  A  +FD++P       NA++ GY   
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 164 ----EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
               +A L    ++L R+ P      D FT   LL+AC+GLS  + GR VHA + R    
Sbjct: 98  NHFQDALLMYSNMQLARVSP------DSFTFPHLLKACSGLSHLQMGRFVHAQVFR--LG 149

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
              DVF+Q+ LI +Y KC  +  A  VF   G  L     + +V WT+++  Y +NG   
Sbjct: 150 FDADVFVQNGLIALYAKCRRLGSARTVFE--GLPLP---ERTIVSWTAIVSAYAQNGEPM 204

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E ++++  M     KPD VA V+V++A +    +K G      +V    LE  P+    L
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVV-KMGLEIEPDLLISL 263

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             +  + G++  A  L ++M      S ++ +W A++S
Sbjct: 264 NTMYAKCGQVATAKILFDKM-----KSPNLILWNAMIS 296


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 161/444 (36%), Positives = 248/444 (55%), Gaps = 18/444 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H +   +G+    L++  + L+  Y  C    N+ T     + +  R+   +N +I  +
Sbjct: 243 IHCYAIRSGIESDVLVV--NGLVNMYAKC---GNVNTAHKLFERMPIRDVASWNAIIGGY 297

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             N     AL  F+ M V GI  ++  + S L A   +     G+Q+  +  +SG+ S+ 
Sbjct: 298 SLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESND 357

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            VG+AL+++YAK   ++ A  +F+ +P KN V  NA++SGY +       L L   M A 
Sbjct: 358 VVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQ 417

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G+  D F + ++L ACA   A E G+Q+H Y IR      ++V + + L+++Y KCG V 
Sbjct: 418 GIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRS--GFESNVVVGTGLVDIYAKCGNVN 475

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A ++F       E    +DVV WT+M+  YG +G+ ++ + L+  M   GTK D +AF 
Sbjct: 476 TAQKLF-------ERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFT 528

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            +++ACSH G V  G++YF+ M  DY L P  EHY+CLVDLL RAG LD+A  +I  M  
Sbjct: 529 AILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNM-- 586

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
                   ++WGALL AC      ELG+ AA+   ELDP N G YV+LSN+YA+   W++
Sbjct: 587 --SLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWED 644

Query: 422 IGQLRELMKEKGLKKDVGCSWIEV 445
           + +LR++MKEKG+KK  GCS + V
Sbjct: 645 VAKLRKMMKEKGVKKQPGCSVVAV 668



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 214/459 (46%), Gaps = 64/459 (13%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKT 73
           +I  + L   YT C      G+L N  +  +    R+ + +N +I+ + +NG P  AL  
Sbjct: 155 VIVGTALASMYTKC------GSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALAL 208

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           FS M V+GI  ++  L S +     +     GKQ+  +  +SG  S V V + L+++YAK
Sbjct: 209 FSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAK 268

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              ++ A  +F+ +P+++    NA++ GY         L     M   G+  +  T+ ++
Sbjct: 269 CGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSV 328

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA L A E G+Q+H Y IR      NDV + ++L+ MY KCG V  A ++F      
Sbjct: 329 LPACAHLFALEQGQQIHGYAIRSGFE-SNDV-VGNALVNMYAKCGNVNSAYKLF------ 380

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
            E    K+VV W +++  Y ++G+  E + L+  M   G KPD  A V+V+ AC+H   +
Sbjct: 381 -ERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLAL 439

Query: 314 KLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDR------- 362
           + G +     +H Y +  G E      + LVD+  + G ++ A KL   M ++       
Sbjct: 440 EQGKQ-----IHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTT 494

Query: 363 --------GHGSSSVSMWG---------------ALLSACHDCGKFELGKLAAQKALELD 399
                   GHG  +++++                A+L+AC   G  + G L   + ++ D
Sbjct: 495 MILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQG-LQYFQCMKSD 553

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
                 Y +   L    C+ D +G+   L +  G+ K++
Sbjct: 554 ------YGLAPKLEHYACLVDLLGRAGHLDEANGIIKNM 586



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 161/332 (48%), Gaps = 23/332 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +   I  + +NG    AL+ +  M   GI  D     S + A  S  D + G++V 
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
             +   G+ S V VG+AL  +Y K   + +A  +FD +P ++ V  NA+++GY +     
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             L L   M   G+  +  TL +++  CA L A E G+Q+H Y IR    + +DV + + 
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS--GIESDVLVVNG 261

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L+ MY KCG V  A ++F       E    +DV  W +++G Y  N    E +  +  M 
Sbjct: 262 LVNMYAKCGNVNTAHKLF-------ERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ 314

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCR 345
           + G KP+ +  V+V+ AC+H   ++ G +     +H Y +  G E      + LV++  +
Sbjct: 315 VRGIKPNSITMVSVLPACAHLFALEQGQQ-----IHGYAIRSGFESNDVVGNALVNMYAK 369

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            G ++ A+KL   M  +     +V  W A++S
Sbjct: 370 CGNVNSAYKLFERMPKK-----NVVAWNAIIS 396



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 14/134 (10%)

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
           + +I  + V+W   +  Y +NG++ + ++LY  M   G  PD++ F++VI AC     ++
Sbjct: 78  QTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQ 137

Query: 315 LGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
            G +     VH+  +  G E      + L  +  + G L+ A ++ + M  R      V 
Sbjct: 138 AGRK-----VHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKR-----DVV 187

Query: 371 MWGALLSACHDCGK 384
            W A+++     G+
Sbjct: 188 SWNAIIAGYSQNGQ 201


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 156/448 (34%), Positives = 244/448 (54%), Gaps = 24/448 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNV---VI 58
           +H +    G+ L   +  +S L+  Y  CR       +    K  + R P+   V   +I
Sbjct: 371 IHCYIIRNGVSLD--VFLKSALIDIYFKCR------DVEMARKIFDQRTPVDIVVCTAMI 422

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           S +  NG    AL+ F ++    +  ++  L S L A   +     GK++  H+ K+G  
Sbjct: 423 SGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHG 482

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
            S +VGSA++D+YAK   +  A   F  I  K++VC N++++   +       ++L R M
Sbjct: 483 GSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQM 542

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              G  YD  ++SA L ACA L A  +G+++HA+M+R      +D+F +S+LI+MY KCG
Sbjct: 543 GMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGA--FRSDLFAESALIDMYSKCG 600

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A +VF+    + E       V W S++  YG +G  K+ + L+  ML +G +PD V
Sbjct: 601 NLDLACRVFDTMEEKNE-------VSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHV 653

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            F+ +ISAC H GQV  GI YF  M  +  +    EHY+C+VDL  RAG L++A+ +IN 
Sbjct: 654 TFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINS 713

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M      S    +WG LL AC   G  EL ++A++   +LDP N G YV+LSN++A    
Sbjct: 714 M----PFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQ 769

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           W+ + ++R LMKE+G++K  GCSWI+V 
Sbjct: 770 WESVLKIRSLMKERGVQKVPGCSWIDVN 797



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 182/367 (49%), Gaps = 24/367 (6%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHG 81
           L+  Y  C H  +   L + +    P+  L  +N +IS + +NG    A   F  M    
Sbjct: 289 LLAMYAKCGHLFDARRLFDMM----PKTDLVTWNGMISGYVQNGFMDEASCLFHEMISAR 344

Query: 82  IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE 141
           +  D+    S L   +     R GK++  ++ ++G    VF+ SALID+Y K   +  A 
Sbjct: 345 MKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMAR 404

Query: 142 LMFDE-IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
            +FD+  PV   VC  A++SGY    +    LE+ R +    +  +  TL+++L ACAGL
Sbjct: 405 KIFDQRTPVDIVVCT-AMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGL 463

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
           +A   G+++H ++++     G   ++ S++++MY KCG +  A Q F        G  +K
Sbjct: 464 AALTLGKELHGHILKN--GHGGSCYVGSAIMDMYAKCGRLDLAHQTF-------IGISDK 514

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           D V W SM+    +NG  +E I L+  M M GTK D V+    +SAC++   +  G E  
Sbjct: 515 DAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIH 574

Query: 321 EWMVHD-YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
            +M+   ++ +   E  S L+D+  + G LD A ++ + M ++   S     W ++++A 
Sbjct: 575 AFMMRGAFRSDLFAE--SALIDMYSKCGNLDLACRVFDTMEEKNEVS-----WNSIIAAY 627

Query: 380 HDCGKFE 386
            + G+ +
Sbjct: 628 GNHGRLK 634



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 147/338 (43%), Gaps = 27/338 (7%)

Query: 34  KNLGTLTNCLKFLNPRNPL---------PFNVVISDFCRNGSPLYALKTFSFMHVHGIFL 84
           K LG    C  FL+ +N           P+N +I  F   G   +AL  +  M   G   
Sbjct: 86  KLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLP 145

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D Y     + A   +     G+ V   +   G+   VFVGS+LI  Y++   IHDA  +F
Sbjct: 146 DKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLF 205

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +P K+ V  N +L+GY +   W     +   M     + +  T + +L  CA      
Sbjct: 206 DRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMIN 265

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
           FG Q+H  ++     L  D  + ++L+ MY KCG +  A ++F++           D+V 
Sbjct: 266 FGSQLHGLVVSS--GLEMDSPVANTLLAMYAKCGHLFDARRLFDMMP-------KTDLVT 316

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W  M+  Y +NG+  E   L+  M+    KPD + F + +   S    ++ G E     +
Sbjct: 317 WNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKE-----I 371

Query: 325 HDYKLEPGPE----HYSCLVDLLCRAGELDKAWKLINE 358
           H Y +  G        S L+D+  +  +++ A K+ ++
Sbjct: 372 HCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQ 409



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 138/328 (42%), Gaps = 20/328 (6%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           H KNL ++  C  FL P          ++    G PL     FS   +H        L S
Sbjct: 2   HHKNLSSIYKC--FL-PSTTFKLKSFHTNSVNIGKPL----QFS---IHNDDSLAPQLVS 51

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L   T       G+Q  A +  +G   +  +G+ L+ +Y       DA+ +F ++ +  
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           S   N ++ G+     +   L     M   G   D +T   +++AC GL++   GR VH 
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            +      L  DVF+ SSLI+ Y + G +  A  +F+    R+    +KD VLW  ML  
Sbjct: 172 KIQFMGFEL--DVFVGSSLIKFYSENGCIHDARYLFD----RMP---SKDGVLWNVMLNG 222

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           Y +NG +     ++  M    T P+ V F  V+S C+    +  G +    +V    LE 
Sbjct: 223 YVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQ-LHGLVVSSGLEM 281

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEM 359
                + L+ +  + G L  A +L + M
Sbjct: 282 DSPVANTLLAMYAKCGHLFDARRLFDMM 309



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 103/254 (40%), Gaps = 26/254 (10%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L ++L+ C   S    GRQ HA M+     +G +  + + L+ MY  CG    A  +F  
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVN--GIGYNGILGTKLLGMYVLCGAFLDAKNIF-- 104

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
             ++L    ++    W  M+  +   G F   +  Y  ML  GT PD+  F  VI AC  
Sbjct: 105 --YQLRLWCSEP---WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGG 159

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHG 365
              V LG      +VHD     G E      S L+      G +  A  L + M      
Sbjct: 160 LNSVALG-----RVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM-----P 209

Query: 366 SSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423
           S    +W  +L+     G ++   G     +  E +P++V    +LS + A   M +   
Sbjct: 210 SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLS-VCASEIMINFGS 268

Query: 424 QLRELMKEKGLKKD 437
           QL  L+   GL+ D
Sbjct: 269 QLHGLVVSSGLEMD 282


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 166/447 (37%), Positives = 249/447 (55%), Gaps = 24/447 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVI 58
           VHAH  ++  L   L++ Q+ ++  Y  C      G L +  +  +    ++ + +  +I
Sbjct: 109 VHAHLVDSHFLDNHLVL-QNIIVNMYAKC------GCLDDARRMFDEMPTKDMVTWTALI 161

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           + F +N  P  AL  F  M   G   + + L S L AS S      G Q+ A   K G+ 
Sbjct: 162 AGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQ 221

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           SSV+VGSAL+D+YA+   +  A+L FD +P K+ V  NAL+SG+         L L+  M
Sbjct: 222 SSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKM 281

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
                   HFT S++L ACA + A E G+ VHA+MI+    L    F+ ++L++MY K G
Sbjct: 282 QRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLI--AFIGNTLLDMYAKAG 339

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A +VF+    RL   +  DVV W +ML    ++G  KE +  +E ML  G +P+E+
Sbjct: 340 SIDDAKRVFD----RL---VKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEI 392

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           +F+ V++ACSH+G +  G+ YFE M   YK+EP   HY   VDLL R G LD+A + I E
Sbjct: 393 SFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIRE 451

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M        + ++WGALL AC      ELG  AA++A ELDPH+ G  ++LSN+YA    
Sbjct: 452 M----PIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGR 507

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEV 445
           W ++ ++R++MKE G+KK   CSW+E+
Sbjct: 508 WRDVAKVRKMMKESGVKKQPACSWVEI 534


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/400 (36%), Positives = 234/400 (58%), Gaps = 15/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +  +I+ F +NG    A+  F  M +  + +D Y   S LTA   V   + G
Sbjct: 235 MRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEG 294

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQV A++ ++ +  ++FV SAL+D+Y K   I  AE +F ++  KN V   A+L GY + 
Sbjct: 295 KQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQN 354

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 ++    M   G++ D FTL +++ +CA L++ E G Q HA  +     L + + 
Sbjct: 355 GYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARAL--TSGLISFIT 412

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKL 284
           + ++L+ +YGKCG +  +        HRL  EI+ KD V WT+++  Y + G   E I L
Sbjct: 413 VSNALVTLYGKCGSIEDS--------HRLFNEISFKDEVTWTALVSGYAQFGKANETIGL 464

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +E+ML +G KPD+V F+ V+SACS  G V+ G + FE M++++ + P  +HY+C++DL  
Sbjct: 465 FESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFS 524

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG +++A   IN+M      S     W  LLS+C   G  ++GK AA+  +ELDPHN  
Sbjct: 525 RAGRIEEARNFINKM----PFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTA 580

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            YV+LS++YA    W+E+ +LR+ M++KGL+K+ GCSWI+
Sbjct: 581 SYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIK 620



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 193/401 (48%), Gaps = 58/401 (14%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIF-LDTYALCSSLTASTSVKDARFGK 106
           R+ + +N +IS +   G    ++K ++ M    G F L+     + L  ++     + G+
Sbjct: 104 RDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGR 163

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL-------- 158
           Q+  HV K G++S VFVGS L+D+Y+K+ +I  A  +FDE+P KN V  N L        
Sbjct: 164 QIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCG 223

Query: 159 -----------------------LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
                                  ++G+ +  L    +++ R M    L  D +T  ++L 
Sbjct: 224 RVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLT 283

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC G+ A + G+QVHAY+IR   +  +++F+ S+L++MY KC  +  A  VF       +
Sbjct: 284 ACGGVMALQEGKQVHAYIIR--TDYKDNIFVASALVDMYCKCKNIKSAEAVF-------K 334

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
               K+VV WT+ML  YG+NGY +E +K +  M   G +PD+    +VIS+C++   ++ 
Sbjct: 335 KMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEE 394

Query: 316 GIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
           G ++     H   L  G   +    + LV L  + G ++ + +L NE+  +   +     
Sbjct: 395 GAQF-----HARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVT----- 444

Query: 372 WGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYVMLS 410
           W AL+S     GK    +G   +  A  L P  V    +LS
Sbjct: 445 WTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLS 485



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 149/348 (42%), Gaps = 49/348 (14%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I   S L+  Y  C   KN+ +     K +  +N + +  ++  + +NG    A+KTFS 
Sbjct: 310 IFVASALVDMYCKC---KNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSD 366

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M  +GI  D + L S +++  ++     G Q  A    SG +S + V +AL+ LY K   
Sbjct: 367 MQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGS 426

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I D+  +F+EI  K+ V   AL+SGY +       + L   M A GL  D  T   +L A
Sbjct: 427 IEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSA 486

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+     E G Q+   MI                     + G+V        +  H    
Sbjct: 487 CSRAGLVEKGNQIFESMI--------------------NEHGIVP-------IQDH---- 515

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
                   +T M+ ++ R G  +E       M  +   PD +++ T++S+C   G + +G
Sbjct: 516 --------YTCMIDLFSRAGRIEEARNFINKMPFS---PDAISWATLLSSCRFYGNMDIG 564

Query: 317 IEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
               E+++   +L+P     Y  L  +    G+ ++  +L  +M D+G
Sbjct: 565 KWAAEFLM---ELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKG 609



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 129/279 (46%), Gaps = 36/279 (12%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM--PALG 182
           + ++  Y+KL  + + E +FD +P ++ V  N+L+SGY    L    ++   LM      
Sbjct: 79  NTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGS 138

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
            + +  T S LL   +     + GRQ+H ++++      + VF+ S L++MY K G+++ 
Sbjct: 139 FNLNRITFSTLLILASKRGCVKLGRQIHGHVVK--FGFMSYVFVGSPLVDMYSKMGMISC 196

Query: 243 ALQVFN-----------------------LAGHRLEGEIN-KDVVLWTSMLGVYGRNGYF 278
           A +VF+                           RL  E+  +D + WTSM+  + +NG  
Sbjct: 197 ARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLD 256

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYS 337
           ++ I ++  M +   + D+  F +V++AC     ++ G +   +++  DYK        S
Sbjct: 257 RDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVA--S 314

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            LVD+ C+   +  A  +  +M  +     +V  W A+L
Sbjct: 315 ALVDMYCKCKNIKSAEAVFKKMTCK-----NVVSWTAML 348


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 254/450 (56%), Gaps = 26/450 (5%)

Query: 1   NVHAHQFETGLLLICL---IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVV 57
            VHAH  +T     C    +  ++RL++ Y  CR    LG     L  +  RN + +  +
Sbjct: 31  RVHAHMIKT-----CYEPPVYLRTRLIVLYNKCR---CLGDARRVLDEMPERNVVSWTAM 82

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           IS + + G    AL  F  M + G   + +   + LT+ TS    + G+Q+ + V K+ +
Sbjct: 83  ISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSF 142

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            S +FVGS+L+D+YAK   I +A  +FD +P ++ V   A++SGY +  L    L+L R 
Sbjct: 143 ESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR 202

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           +   G+  ++ T +++L A +GL+A + GRQVH++++R    L   V +Q+SLI+MY KC
Sbjct: 203 LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR--AKLPFYVVLQNSLIDMYSKC 260

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPD 296
           G +T + ++F+    R        V+ W +ML  Y ++G  +E ++L++ M   N  KPD
Sbjct: 261 GSLTYSRRIFDSMPERT-------VISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 313

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYK-LEPGPEHYSCLVDLLCRAGELDKAWKL 355
            V F+ V+S CSH G    G+E F  MV+     EP  EHY C+VDL  RAG +++A++ 
Sbjct: 314 SVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEF 373

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
           I +M        + ++WG+LL AC       +G+  A++ LE++  N G YV+LSNLYA 
Sbjct: 374 IKKM----PFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYAS 429

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              WD++  +RELMKEK + K+ G SWIE+
Sbjct: 430 AGRWDDVRTVRELMKEKAVIKEPGRSWIEL 459



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 169/342 (49%), Gaps = 28/342 (8%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M + G+ ++     S LT   S    R G++V AH+ K+ +   V++ + LI LY K   
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DA  + DE+P +N V   A++SGY +    +  L L   M   G   + FT + +L +
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C   S  + GRQ+H+ +I+   +  + +F+ SSL++MY K G + +A +VF+       G
Sbjct: 121 CTSSSGFQLGRQIHSLVIK--TSFESHIFVGSSLLDMYAKAGKICEARRVFD-------G 171

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              +DVV  T+++  Y + G  +E + L+  +   G + + V + +V++A S    +  G
Sbjct: 172 LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHG 231

Query: 317 IEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
            +     VH + L      Y    + L+D+  + G L  + ++ + M +R     +V  W
Sbjct: 232 RQ-----VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER-----TVISW 281

Query: 373 GALLS--ACHDCGK--FELGKLAAQKALELDPHNVGIYVMLS 410
            A+L   + H  G+   EL KL  ++  ++ P +V    +LS
Sbjct: 282 NAMLVGYSKHGLGREAVELFKLMKEEN-KVKPDSVTFLAVLS 322


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/406 (36%), Positives = 229/406 (56%), Gaps = 16/406 (3%)

Query: 44  KFLNPRNPLPFNV---VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           K  + R P+   V   +IS +  NG    AL+ F ++    +  ++  L S L A   + 
Sbjct: 306 KIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLA 365

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
               GK++  H+ K+G   S +VGSA++D+YAK   +  A   F  I  K++VC N++++
Sbjct: 366 ALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMIT 425

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
              +       ++L R M   G  YD  ++SA L ACA L A  +G+++HA+M+R     
Sbjct: 426 SCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGA--F 483

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            +D+F +S+LI+MY KCG +  A +VF+    + E       V W S++  YG +G  K+
Sbjct: 484 RSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNE-------VSWNSIIAAYGNHGRLKD 536

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            + L+  ML +G +PD V F+ +ISAC H GQV  GI YF  M  +  +    EHY+C+V
Sbjct: 537 SLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMV 596

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DL  RAG L++A+ +IN M      S    +WG LL AC   G  EL ++A++   +LDP
Sbjct: 597 DLFGRAGRLNEAFGMINSM----PFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDP 652

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
            N G YV+LSN++A    W+ + ++R LMKE+G++K  GCSWI+V 
Sbjct: 653 QNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVN 698



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 158/366 (43%), Gaps = 30/366 (8%)

Query: 34  KNLGTLTNCLKFLNPRNPL---------PFNVVISDFCRNGSPLYALKTFSFMHVHGIFL 84
           K LG    C  FL+ +N           P+N +I  F   G   +AL  +  M   G   
Sbjct: 86  KLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLP 145

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D Y     + A   +     G+ V   +   G+   VFVGS+LI  Y++   IHDA  +F
Sbjct: 146 DKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLF 205

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +P K+ V  N +L+GY +   W     +   M     + +  T + +L  CA      
Sbjct: 206 DRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMIN 265

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
           FG Q+H  ++     + + V    +LI++Y KC  V  A ++F       +     D+V+
Sbjct: 266 FGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIF-------DQRTPVDIVV 318

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
            T+M+  Y  NG     ++++  +L    + + V   +V+ AC+    + LG E     +
Sbjct: 319 CTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKE-----L 373

Query: 325 HDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           H + L+ G        S ++D+  + G LD A +    + D+         W +++++C 
Sbjct: 374 HGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDK-----DAVCWNSMITSCS 428

Query: 381 DCGKFE 386
             GK E
Sbjct: 429 QNGKPE 434



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 141/328 (42%), Gaps = 20/328 (6%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           H KNL ++  C  FL P          ++    G PL     FS   +H        L S
Sbjct: 2   HHKNLSSIYKC--FL-PSTTFKLKSFHTNSVNIGKPL----QFS---IHNDDSLAPQLVS 51

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L   T       G+Q  A +  +G   +  +G+ L+ +Y       DA+ +F ++ +  
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           S   N ++ G+     +   L     M   G   D +T   +++AC GL++   GR VH 
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHD 171

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            +      L  DVF+ SSLI+ Y + G +  A  +F+    R+    +KD VLW  ML  
Sbjct: 172 KIQFMGFEL--DVFVGSSLIKFYSENGCIHDARYLFD----RMP---SKDGVLWNVMLNG 222

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD-YKLE 330
           Y +NG +     ++  M    T P+ V F  V+S C+    +  G +    +V    +++
Sbjct: 223 YVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMD 282

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINE 358
               +   L+D+  +  +++ A K+ ++
Sbjct: 283 SPVANTFALIDIYFKCRDVEMARKIFDQ 310



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 103/254 (40%), Gaps = 26/254 (10%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L ++L+ C   S    GRQ HA M+     +G +  + + L+ MY  CG    A  +F  
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVN--GIGYNGILGTKLLGMYVLCGAFLDAKNIF-- 104

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
             ++L    ++    W  M+  +   G F   +  Y  ML  GT PD+  F  VI AC  
Sbjct: 105 --YQLRLWCSEP---WNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGG 159

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHG 365
              V LG      +VHD     G E      S L+      G +  A  L + M      
Sbjct: 160 LNSVALG-----RVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM-----P 209

Query: 366 SSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423
           S    +W  +L+     G ++   G     +  E +P++V    +LS + A   M +   
Sbjct: 210 SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLS-VCASEIMINFGS 268

Query: 424 QLRELMKEKGLKKD 437
           QL  L+   GL+ D
Sbjct: 269 QLHGLVVSSGLEMD 282


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 159/449 (35%), Positives = 254/449 (56%), Gaps = 26/449 (5%)

Query: 2   VHAHQFETGLLLICL---IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVI 58
           VHAH  +T     C    +  ++RL++ Y  CR    LG     L  +  RN + +  +I
Sbjct: 499 VHAHMIKT-----CYEPPVYLRTRLIVLYNKCR---CLGDARRVLDEMPERNVVSWTAMI 550

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           S + + G    AL  F  M + G   + +   + LT+ TS    + G+Q+ + V K+ + 
Sbjct: 551 SGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFE 610

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S +FVGS+L+D+YAK   I +A  +FD +P ++ V   A++SGY +  L    L+L R +
Sbjct: 611 SHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRL 670

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              G+  ++ T +++L A +GL+A + GRQVH++++R    L   V +Q+SLI+MY KCG
Sbjct: 671 QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR--AKLPFYVVLQNSLIDMYSKCG 728

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDE 297
            +T + ++F+    R        V+ W +ML  Y ++G  +E ++L++ M   N  KPD 
Sbjct: 729 SLTYSRRIFDSMPERT-------VISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDS 781

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYK-LEPGPEHYSCLVDLLCRAGELDKAWKLI 356
           V F+ V+S CSH G    G+E F  MV+     EP  EHY C+VDL  RAG +++A++ I
Sbjct: 782 VTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFI 841

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
            +M        + ++WG+LL AC       +G+  A++ LE++  N G YV+LSNLYA  
Sbjct: 842 KKM----PFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASA 897

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             WD++  +RELMKEK + K+ G SWIE+
Sbjct: 898 GRWDDVRTVRELMKEKAVIKEPGRSWIEL 926



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 169/342 (49%), Gaps = 28/342 (8%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M + G+ ++     S LT   S    R G++V AH+ K+ +   V++ + LI LY K   
Sbjct: 468 MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 527

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DA  + DE+P +N V   A++SGY +    +  L L   M   G   + FT + +L +
Sbjct: 528 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 587

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C   S  + GRQ+H+ +I+   +  + +F+ SSL++MY K G + +A +VF       +G
Sbjct: 588 CTSSSGFQLGRQIHSLVIK--TSFESHIFVGSSLLDMYAKAGKICEARRVF-------DG 638

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              +DVV  T+++  Y + G  +E + L+  +   G + + V + +V++A S    +  G
Sbjct: 639 LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHG 698

Query: 317 IEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
            +     VH + L      Y    + L+D+  + G L  + ++ + M +R     +V  W
Sbjct: 699 RQ-----VHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER-----TVISW 748

Query: 373 GALLS--ACHDCGK--FELGKLAAQKALELDPHNVGIYVMLS 410
            A+L   + H  G+   EL KL  ++  ++ P +V    +LS
Sbjct: 749 NAMLVGYSKHGLGREAVELFKLMKEEN-KVKPDSVTFLAVLS 789


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 149/394 (37%), Positives = 228/394 (57%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++S +  N     A+  F  M+  G+ +++  L   + A  S  +   G  +     
Sbjct: 111 YNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTL 170

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+ S V V +  I +Y K   ++ A+ +FDE+PVK  +  NA++SGY +  L    LE
Sbjct: 171 KYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLE 230

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R M   G+  D  TL  +L +CA L A   G +V   M  +     ++ F+ ++LI M
Sbjct: 231 LYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKM--QASGFTSNPFLNNALINM 288

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y +CG +TKA  VF       +G   + +V WT+++G YG +G+ +  ++L++ M+ +G 
Sbjct: 289 YARCGNLTKAQAVF-------DGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGI 341

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +PD  AFV V+SACSH G    G+EYF+ M  +Y+LEPGPEHYSC+VDLL RAG L +A 
Sbjct: 342 EPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQ 401

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
            LI  M  +  G    ++WGALL AC      EL +LA ++ +EL+P N+G YV+LSN+Y
Sbjct: 402 TLIESMPIKPDG----AVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIY 457

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +       + ++R +MKEK LKKD GCS++E+ G
Sbjct: 458 SNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKG 491



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 157/343 (45%), Gaps = 27/343 (7%)

Query: 53  PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           P+N  + +  +    L AL  +  M  HG   + +    +L +  ++     G Q    +
Sbjct: 7   PWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQI 66

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI--PVKNSVCANALLSGYCEAKLWAG 170
           TK G +   FV + LI +Y K  L+ +A  +F+E     K +VC NAL+SGY      + 
Sbjct: 67  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSD 126

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            + L R M   G+  +  TL  L+ AC      E G  +H   ++      +DV + +  
Sbjct: 127 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKY--GFDSDVSVVNCF 184

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           I MY KCG V  A ++F+      E  + K ++ W +M+  Y +NG    V++LY  M M
Sbjct: 185 ITMYMKCGSVNYAQKLFD------EMPV-KGLISWNAMVSGYAQNGLATNVLELYRNMDM 237

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           NG  PD V  V V+S+C++ G   +G E  E+ +        P   + L+++  R G L 
Sbjct: 238 NGVHPDPVTLVGVLSSCANLGAQSVGHE-VEFKMQASGFTSNPFLNNALINMYARCGNLT 296

Query: 351 KAWKLINEMLDR---------------GHGSSSVSMWGALLSA 378
           KA  + + M +R               GHG  +V ++  ++ +
Sbjct: 297 KAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRS 339



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 121/280 (43%), Gaps = 45/280 (16%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N ++S + +NG     L+ +  M ++G+  D   L   L++  ++     G +V+  
Sbjct: 210 ISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFK 269

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           +  SG+ S+ F+ +ALI++YA+   +  A+ +FD +P +  V   A++ GY         
Sbjct: 270 MQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIA 329

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           ++L + M   G++ D      +L AC+           HA                    
Sbjct: 330 VQLFKEMIRSGIEPDGTAFVCVLSACS-----------HA-------------------- 358

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
                 GL  + L+ F +     + E   +   ++ M+ + GR G  KE   L E+M + 
Sbjct: 359 ------GLTDQGLEYFKMMKRNYQLEPGPE--HYSCMVDLLGRAGRLKEAQTLIESMPI- 409

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
             KPD   +  ++ AC     V+L    FE ++   +LEP
Sbjct: 410 --KPDGAVWGALLGACKIHKNVELAELAFERVI---ELEP 444


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 165/447 (36%), Positives = 249/447 (55%), Gaps = 24/447 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVI 58
           VHAH  ++  L   L++ Q+ ++  Y  C      G L +  +  +    ++ + +  +I
Sbjct: 109 VHAHLVDSHFLDNHLVL-QNIIVNMYAKC------GCLDDARRMFDEMPTKDMVTWTALI 161

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           + F +N  P  AL  F  M   G+  + + L S L AS S      G Q+ A   K G+ 
Sbjct: 162 AGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQ 221

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           SSV+VGSAL+D+YA+   +  A+L FD +P K+ V  NAL+SG+         L L+  M
Sbjct: 222 SSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKM 281

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
                   HFT S++  ACA + A E G+ VHA+MI+    L    F+ ++L++MY K G
Sbjct: 282 QRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKL--IAFIGNTLLDMYAKAG 339

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A +VF+    RL   +  DVV W +ML    ++G  KE +  +E ML  G +P+E+
Sbjct: 340 SIDDAKRVFD----RL---VKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEI 392

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           +F+ V++ACSH+G +  G+ YFE M   YK+EP   HY   VDLL R G LD+A + I E
Sbjct: 393 SFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIRE 451

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M        + ++WGALL AC      ELG  AA++A ELDPH+ G  ++LSN+YA    
Sbjct: 452 MPIE----PTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGR 507

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEV 445
           W ++ ++R++MKE G+KK   CSW+E+
Sbjct: 508 WRDVAKVRKMMKESGVKKQPACSWVEI 534


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 148/394 (37%), Positives = 228/394 (57%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++S +  N     A+  F  M+  G+ +++  L   + A  S  +   G  +     
Sbjct: 120 YNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTL 179

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+ S V V +  I +Y K   ++ A+ +FDE+PVK  +  NA++SGY +  L    LE
Sbjct: 180 KYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLE 239

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R M   G+  D  TL  +L +CA L A   G +V   +  +     ++ F+ ++LI M
Sbjct: 240 LYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKI--QASGFTSNPFLNNALINM 297

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y +CG +TKA  VF       +G   + +V WT+++G YG +G+ +  ++L++ M+ +G 
Sbjct: 298 YARCGNLTKAQAVF-------DGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGI 350

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +PD  AFV V+SACSH G    G+EYF+ M  +Y+LEPGPEHYSC+VDLL RAG L +A 
Sbjct: 351 EPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQ 410

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
            LI  M  +  G    ++WGALL AC      EL +LA ++ +EL+P N+G YV+LSN+Y
Sbjct: 411 TLIESMPIKPDG----AVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIY 466

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +       + ++R +MKEK LKKD GCS++E+ G
Sbjct: 467 SNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKG 500



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 157/343 (45%), Gaps = 27/343 (7%)

Query: 53  PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           P+N  + +  +    L AL  +  M  HG   + +    +L +  ++     G Q    +
Sbjct: 16  PWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQI 75

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI--PVKNSVCANALLSGYCEAKLWAG 170
           TK G +   FV + LI +Y K  L+ +A  +F+E     K +VC NAL+SGY      + 
Sbjct: 76  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSE 135

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            + L R M   G+  +  TL  L+ AC      E G  +H   ++      +DV + +  
Sbjct: 136 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKY--GFDSDVSVVNCF 193

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           I MY KCG V  A ++F+      E  + K ++ W +M+  Y +NG    V++LY  M M
Sbjct: 194 ITMYMKCGSVNYAQKLFD------EMPV-KGLISWNAMVSGYAQNGLATNVLELYRNMDM 246

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           NG  PD V  V V+S+C++ G   +G E  E+ +        P   + L+++  R G L 
Sbjct: 247 NGVHPDPVTLVGVLSSCANLGAQSVGHE-VEFKIQASGFTSNPFLNNALINMYARCGNLT 305

Query: 351 KAWKLINEMLDR---------------GHGSSSVSMWGALLSA 378
           KA  + + M +R               GHG  +V ++  ++ +
Sbjct: 306 KAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRS 348



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 121/280 (43%), Gaps = 45/280 (16%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N ++S + +NG     L+ +  M ++G+  D   L   L++  ++     G +V+  
Sbjct: 219 ISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFK 278

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           +  SG+ S+ F+ +ALI++YA+   +  A+ +FD +P +  V   A++ GY         
Sbjct: 279 IQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIA 338

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           ++L + M   G++ D      +L AC+           HA                    
Sbjct: 339 VQLFKEMIRSGIEPDGTAFVCVLSACS-----------HA-------------------- 367

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
                 GL  + L+ F +     + E   +   ++ M+ + GR G  KE   L E+M + 
Sbjct: 368 ------GLTDQGLEYFKMMKRNYQLEPGPE--HYSCMVDLLGRAGRLKEAQTLIESMPI- 418

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
             KPD   +  ++ AC     V+L    FE ++   +LEP
Sbjct: 419 --KPDGAVWGALLGACKIHKNVELAELAFERVI---ELEP 453


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 159/480 (33%), Positives = 253/480 (52%), Gaps = 56/480 (11%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVI 58
           +HAH     +     II ++ L+  Y+ C      G L    +  N    RN   +N +I
Sbjct: 501 IHAHLIRANITKN--IIVETELVHMYSEC------GRLNYAKEIFNRMAERNAYSWNSMI 552

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
             + +NG    AL+ F  M ++GI  D ++L S L++  S+ D++ G+++   + ++   
Sbjct: 553 EGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME 612

Query: 119 SSVFVGSALIDLYAK------------------LLL-------------IHDAELMFDEI 147
               +   L+D+YAK                  ++L              +DA+ +FD++
Sbjct: 613 EEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQM 672

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
             +N+   N++L+GY    L          M    ++YD  T+  ++  C+ L A E G 
Sbjct: 673 EQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGD 732

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWT 266
           Q+H+ +I+K   +   V ++++L++MY KCG +TKA  VF N+ G        K++V W 
Sbjct: 733 QLHSLIIKKGF-VNCSVVLETALVDMYSKCGAITKARTVFDNMNG--------KNIVSWN 783

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +M+  Y ++G  KE + LYE M   G  P+EV F+ ++SACSHTG V+ G+  F  M  D
Sbjct: 784 AMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQED 843

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           Y +E   EHY+C+VDLL RAG L+ A + + +M         VS WGALL AC      +
Sbjct: 844 YNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKM----PIEPEVSTWGALLGACRVHKDMD 899

Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +G+LAAQ+  ELDP N G YV++SN+YA    W E+  +R++MK KG+KKD G SWIE+ 
Sbjct: 900 MGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEIN 959



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 169/326 (51%), Gaps = 14/326 (4%)

Query: 41  NCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAST 97
           +CLK  +    RN + +N +IS   + G    AL  F  M   G   + + L S L AS 
Sbjct: 329 SCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASA 388

Query: 98  SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANA 157
            + D   G+++  H+ ++   S + +GSAL+D+Y+K  ++ +A  +F  +  +N V  NA
Sbjct: 389 GLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNA 448

Query: 158 LLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           LL+GY +       LEL   M +  G+  D FT + LL  CA       GRQ+HA++IR 
Sbjct: 449 LLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR- 507

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
             N+  ++ +++ L+ MY +CG +  A ++FN    R       +   W SM+  Y +NG
Sbjct: 508 -ANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER-------NAYSWNSMIEGYQQNG 559

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
             +E ++L++ M +NG KPD  +  +++S+C      + G E   ++V +   E G    
Sbjct: 560 ETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV 619

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDR 362
             LVD+  + G +D AWK+ ++ + +
Sbjct: 620 -VLVDMYAKCGSMDYAWKVYDQTIKK 644



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 172/350 (49%), Gaps = 22/350 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN   +N +I  + R    +  L+ +  M   G F D +   S + A  +++D    +Q+
Sbjct: 138 RNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQL 197

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           Q+ V K+G   ++FVG AL+D YA+   + DA    DEI   + V  NA+++GY +   W
Sbjct: 198 QSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSW 257

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                +   M  +G+  D+FT ++ LR C  L + + G+QVH+ +I   C    D F+ +
Sbjct: 258 EEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLI--ACGFKGDTFVGN 315

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KC      L+VF+  G R       + V W S++    + G+F + + L+  M
Sbjct: 316 ALIDMYAKCDDEESCLKVFDEMGER-------NQVTWNSIISAEAQFGHFNDALVLFLRM 368

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G K +     +++ A +    +  G E    +V +  L       S LVD+  + G 
Sbjct: 369 QESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL-LNSDIILGSALVDMYSKCGM 427

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +++A ++   +L+R   S     + ALL+     G  + GK  A++ALEL
Sbjct: 428 VEEAHQVFRSLLERNEVS-----YNALLA-----GYVQEGK--AEEALEL 465



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 194/426 (45%), Gaps = 37/426 (8%)

Query: 12  LLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYAL 71
           LL   II  S L+  Y+ C   +    +    + L  RN + +N +++ + + G    AL
Sbjct: 407 LLNSDIILGSALVDMYSKCGMVEEAHQV---FRSLLERNEVSYNALLAGYVQEGKAEEAL 463

Query: 72  KTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL 130
           + +  M    GI  D +   + LT   + ++   G+Q+ AH+ ++    ++ V + L+ +
Sbjct: 464 ELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHM 523

Query: 131 YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
           Y++   ++ A+ +F+ +  +N+   N+++ GY +       L L + M   G+  D F+L
Sbjct: 524 YSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSL 583

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF--- 247
           S++L +C  LS ++ GR++H +++R    +  +  +Q  L++MY KCG +  A +V+   
Sbjct: 584 SSMLSSCVSLSDSQKGRELHNFIVRNT--MEEEGILQVVLVDMYAKCGSMDYAWKVYDQT 641

Query: 248 ---------------------NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
                                N A +  +    ++  LW S+L  Y   G  KE    + 
Sbjct: 642 IKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFL 701

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML +  + D +  VT+++ CS    ++ G +    ++    +       + LVD+  + 
Sbjct: 702 EMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKC 761

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVG 404
           G + KA  + + M    +G + VS W A++S  + H C K  L          + P+ V 
Sbjct: 762 GAITKARTVFDNM----NGKNIVS-WNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVT 816

Query: 405 IYVMLS 410
              +LS
Sbjct: 817 FLAILS 822



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 126/288 (43%), Gaps = 26/288 (9%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD---AELMFDEIPVKNSVCANALLSG 161
           GK +   +  +G+    ++ + ++ LYA+   + D   A  +F+E+P +N    N ++  
Sbjct: 90  GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILA 149

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           Y     +   L L   M   G   D FT  ++++AC  +      RQ+ + +++   N  
Sbjct: 150 YARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNC- 208

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            ++F+  +L++ Y + G +  A+   +     +EG     VV W +++  Y +   ++E 
Sbjct: 209 -NLFVGGALVDGYARFGWMDDAVTSLD----EIEG---TSVVTWNAVIAGYVKILSWEEA 260

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS---- 337
             +++ ML  G  PD   F + +  C        G +     VH   +  G +  +    
Sbjct: 261 WGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQ-----VHSKLIACGFKGDTFVGN 315

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
            L+D+  +  + +   K+ +EM +R   +     W +++SA    G F
Sbjct: 316 ALIDMYAKCDDEESCLKVFDEMGERNQVT-----WNSIISAEAQFGHF 358


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/401 (38%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 46  LNP-RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           L P R+ + +  +I+   +NG    AL  FS M    I  + +    +  AS S++    
Sbjct: 67  LTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLV 126

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GKQV A   K+G +S VFVG +  D+Y+K  L  +A  MFDE+P +N    NA LS    
Sbjct: 127 GKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVL 186

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
              +   L         G++   F +S++L ACAGLS  E G+ VH   + K C +GN +
Sbjct: 187 EGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAV-KACVVGN-I 244

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ S+L++MYGKCG +  A + F+    R       ++V W +M+G Y   G     + L
Sbjct: 245 FVGSALVDMYGKCGSIEDAERAFDEMPER-------NLVTWNAMIGGYAHQGQADMAVTL 297

Query: 285 YEAMLMNGTK--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           ++ M     +  P+ V FV V+SACS  G V +G+E FE M   Y +EPG EHY+C+VDL
Sbjct: 298 FDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDL 357

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG +++A++ I +M  R     +VS+WGALL A    GK ELGK+AA    ELDP +
Sbjct: 358 LGRAGMVEQAYQFIKKMPIR----PTVSVWGALLGASKMFGKSELGKVAADNLFELDPLD 413

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
            G +V+LSN++A    W+E   +R+ MK+ G+KK  GCSWI
Sbjct: 414 SGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWI 454



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 26/204 (12%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV--FMQSSLIEMYGKCGLVTKALQV 246
           +L++L+ +      +  GR  HA +I+    L N +  F+ + L+ MY K      A  +
Sbjct: 8   SLASLVESAVSTQCSRLGRAAHAQIIK---TLDNPLPSFIYNHLVNMYSKLDRPNSAQLL 64

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
            +L         N+ VV WT+++    +NG F   +  +  M  +  +P++  F     A
Sbjct: 65  LSLTP-------NRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKA 117

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGP---EHYSC-LVDLLCRAGELDKAWKLINEMLDR 362
                   +G +     VH   ++ G        C   D+  +AG  ++A K+ +EM +R
Sbjct: 118 SGSLRSPLVGKQ-----VHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPER 172

Query: 363 GHGSSSVSMWGALLSACHDCGKFE 386
                +++ W A LS     G+++
Sbjct: 173 -----NIATWNAYLSNSVLEGRYD 191


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 145/394 (36%), Positives = 227/394 (57%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I    +NG P  AL  +  M   G+  D + + S L AS  +K  R+GK+V   V 
Sbjct: 305 WNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVL 364

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           + G     F+G +L+ LY        A L+FD +  K+SV  NA++SGY +  L    L 
Sbjct: 365 RHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALI 424

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R + + G       + ++L AC+  SA   G++ H Y ++    L  DVF+  S I+M
Sbjct: 425 LFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKAL--LMEDVFVACSTIDM 482

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G + ++  VF       +G  NKD+  W +++  YG +G  +E I+L+E M   G 
Sbjct: 483 YAKSGCIKESRSVF-------DGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQ 535

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            PD   F+ +++ CSH G V+ G++YF  M + + +EP  EHY+C++D+L RAG LD A 
Sbjct: 536 MPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDAL 595

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           +L++EM ++        +W +LLS C + G+ E+G++ A+K LEL+P NV  YV LSNLY
Sbjct: 596 RLVHEMPEQ----PDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLY 651

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A    WD++ ++R+++K+ GL+KD GCSWIE+ G
Sbjct: 652 AGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGG 685



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 138/306 (45%), Gaps = 26/306 (8%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D +     + A T   D   G+ +   V K G L  VFVG+ALI +Y K   +  A  +F
Sbjct: 30  DNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVF 89

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA--LGLDYDHFTLSALLRACAGLSA 202
             +PV+N V  N+++SG+ E        +++  M A   GL  D  TL  +L  CA    
Sbjct: 90  HYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVD 149

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            + G ++H   ++    L  DV + +SL++MY KCG +T+A  +F+           K+ 
Sbjct: 150 VQMGIRIHGLAVK--LGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNR-------KNA 200

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           V W +M+G     GY  E   L+  M M    + +EV  + ++ AC    Q++   E   
Sbjct: 201 VSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKE--- 257

Query: 322 WMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             +H Y +  G ++     +  V    + G L  A ++   M      + +V+ W AL+ 
Sbjct: 258 --LHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSM-----ETKTVNSWNALIG 310

Query: 378 ACHDCG 383
            C   G
Sbjct: 311 GCAQNG 316



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 151/341 (44%), Gaps = 26/341 (7%)

Query: 45  FLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV--HGIFLDTYALCSSLTASTSVKDA 102
           ++  RN + +N +IS F  NG           M     G+  D   L + L       D 
Sbjct: 91  YMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDV 150

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           + G ++     K G    V V ++L+D+Y+K   + +A+++FD+   KN+V  N ++ G 
Sbjct: 151 QMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGL 210

Query: 163 CEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           C          L R M     ++ +  T+  +L AC  +S     +++H Y IR      
Sbjct: 211 CTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRH--GFQ 268

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            D  + +  +  Y KCG++  A +VF    + +E    K V  W +++G   +NG  ++ 
Sbjct: 269 YDELVANGFVAAYAKCGMLICAERVF----YSME---TKTVNSWNALIGGCAQNGDPRKA 321

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS---- 337
           + LY  M  +G  PD     +++ A +H   ++ G E     VH + L  G E  S    
Sbjct: 322 LNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKE-----VHGFVLRHGLEIDSFIGI 376

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            L+ L    GE   A  L + M ++    SSVS W A++S 
Sbjct: 377 SLLSLYIHCGESSSARLLFDGMEEK----SSVS-WNAMISG 412



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 134/286 (46%), Gaps = 24/286 (8%)

Query: 166 KLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           +L++  +++ V+L+     + D+FT   +++AC G      G  +H  +I+    L  DV
Sbjct: 9   ELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLL--DV 66

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++LI MYGK G V  A++VF+    R       ++V W S++  +  NG+ K+   +
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVR-------NLVSWNSIISGFSENGFSKDCFDM 119

Query: 285 YEAMLM--NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
              M+    G  PD    VTV+  C+    V++GI      V    L       + LVD+
Sbjct: 120 LVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVK-LGLSEDVRVNNSLVDM 178

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK-LAAQKALELDPH 401
             + G L +A  L ++  +R +  S  +M G L +  +    F L + +  Q+ +E++  
Sbjct: 179 YSKCGYLTEAQMLFDKN-NRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEV 237

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            V     L+ L A  C+  EI QLR L +  G     G  + E+  
Sbjct: 238 TV-----LNILPA--CL--EISQLRSLKELHGYSIRHGFQYDELVA 274



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 139/338 (41%), Gaps = 50/338 (14%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +N +IS + +NG P  AL  F  +   G      A+ S L A +     R G
Sbjct: 398 MEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLG 457

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K+   +  K+  +  VFV  + ID+YAK   I ++  +FD +  K+    NA+++ Y   
Sbjct: 458 KETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVH 517

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 +EL   M  +G   D FT   +L  C+           HA              
Sbjct: 518 GDGEESIELFERMRKVGQMPDGFTFIGILTVCS-----------HA-------------- 552

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAG--HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
                       GLV + L+ FN     H +E ++      +  ++ + GR G   + ++
Sbjct: 553 ------------GLVEEGLKYFNEMQNFHGIEPKLEH----YACVMDMLGRAGRLDDALR 596

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDL 342
           L   M     +PD   + +++S C + G++++G    E ++   +LEP   E+Y  L +L
Sbjct: 597 LVHEM---PEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLL---ELEPKNVENYVSLSNL 650

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
              +G  D   ++   + D G    +   W  L    H
Sbjct: 651 YAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVH 688


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 140/403 (34%), Positives = 234/403 (58%), Gaps = 13/403 (3%)

Query: 45  FLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
            ++ R+ + +N +I+ +  +G  + ALK FS MH  G  +  + L S++ A  +      
Sbjct: 117 IMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINE 176

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            KQ+     K    S+ FVG+A++D+YAK  +I DA  +F+++P +  V  ++L +GY +
Sbjct: 177 CKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQ 236

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             L    L L R     G++   FTLSA+L ACA L+    G Q+HA +++  C    + 
Sbjct: 237 NGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILK--CGFHGNF 294

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ +SL+++Y +CG + KA  +F    H       K+VV+W +M+  + R+ +  E + L
Sbjct: 295 FVAASLVDVYARCGQIEKAYALFAYMEH-------KNVVIWNAMIASFSRHAHSWEAMIL 347

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +E M   G  P+EV +++V+S CSH G V+ G  YF  ++ D  +EP   HYSC+VD+L 
Sbjct: 348 FEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLG 407

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           R+G+ D+AW+L+N+M        + SMWG+LL +C +     L ++AA++  +L+P N G
Sbjct: 408 RSGKTDEAWELLNKMP----FEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGG 463

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            +V+LSN+YA    W+ +   R+ +K+ G KK++G SWIE  G
Sbjct: 464 NHVLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKG 506



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 151/344 (43%), Gaps = 30/344 (8%)

Query: 46  LNPRNPLPFNVVIS-------DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTS 98
           +NP +    +V+ S        FC   +   +LK      +    +D  A+   L     
Sbjct: 10  INPHSTGSLSVLCSGIYLAARSFCNKLNHSSSLKDRRLARIDRNLIDVSAISQRLQLCAK 69

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
            K    GK         G ++     + LI+LY K      A L+FD + V++ V  N +
Sbjct: 70  RKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTM 129

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           ++GY  +      L+L   M   G     FTLS+ + ACA   A    +Q+H   ++   
Sbjct: 130 IAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALK--L 187

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
            L ++ F+ ++++++Y KC ++  A  VF       E    + +V W+S+   Y +NG  
Sbjct: 188 ALDSNSFVGTAILDVYAKCNMIKDACWVF-------EKMPERTLVTWSSLFAGYVQNGLH 240

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH--- 335
           +E + L+      G +  E     ++SAC+    + L IE  +  +H   L+ G      
Sbjct: 241 EEALHLFRCAQREGVELTEFTLSAILSACA---SLALKIEGIQ--LHAVILKCGFHGNFF 295

Query: 336 -YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
             + LVD+  R G+++KA+ L   M  +     +V +W A++++
Sbjct: 296 VAASLVDVYARCGQIEKAYALFAYMEHK-----NVVIWNAMIAS 334


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 242/431 (56%), Gaps = 17/431 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++F + L+  Y+ C    NL         +     + +  +I+   R G    A+  F  
Sbjct: 294 VMFNNTLLDMYSKC---GNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDE 350

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D YA+ S + A         G++V  H+ K+   S++ V +AL+++YAK   
Sbjct: 351 MQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGS 410

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + +A L+F ++PVKN V  N ++ GY +  L    L+L   M    L  D  T++ +L A
Sbjct: 411 MEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQK-QLKPDDVTMACVLPA 469

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CAGL+A E GR++H +++RK     +D+ +  +L++MY KCGL+  A Q+F++       
Sbjct: 470 CAGLAALEKGREIHGHILRK--GYFSDLHVACALVDMYVKCGLLVLAQQLFDMIP----- 522

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              KD++LWT M+  YG +G+ KE I  +E M + G +P+E +F +++ AC+H+G +K G
Sbjct: 523 --KKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEG 580

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            + F+ M  +  +EP  EHY+C+VDLL R+G L +A+K I  M  +       ++WGALL
Sbjct: 581 WKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIK----PDAAIWGALL 636

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           S C      EL +  A+   EL+P N   YV+L+N+YA+   W+E+ +++  + + GLK 
Sbjct: 637 SGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKN 696

Query: 437 DVGCSWIEVTG 447
           D GCSWIEV G
Sbjct: 697 DQGCSWIEVQG 707



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 129/265 (48%), Gaps = 9/265 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N+++S++ + G+   ++  F  M   GI  D+Y     L    +    R  K+V  +V 
Sbjct: 126 WNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVL 185

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+ S   V ++LI  Y K   +  A ++FDE+  ++ V  N+++SG         GLE
Sbjct: 186 KLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLE 245

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M  LG+D D  TL  +L ACA +     GR +HAY ++        V   ++L++M
Sbjct: 246 FFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVK--AGFSGGVMFNNTLLDM 303

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A +VF   G          +V WTS++  + R G   E I L++ M   G 
Sbjct: 304 YSKCGNLNGANEVFVKMGE-------TTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGL 356

Query: 294 KPDEVAFVTVISACSHTGQVKLGIE 318
           +PD  A  +V+ AC+ +  +  G E
Sbjct: 357 RPDIYAVTSVVHACACSNSLDKGRE 381



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 176/362 (48%), Gaps = 26/362 (7%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+ + +N +IS    NG     L+ F  M   G+ +D+  L + L A  +V +   G
Sbjct: 219 LSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLG 278

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + + A+  K+G+   V   + L+D+Y+K   ++ A  +F ++     V   ++++ +   
Sbjct: 279 RALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVRE 338

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    + L   M + GL  D + +++++ ACA  ++ + GR+VH ++ +   N+G+++ 
Sbjct: 339 GLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKN--NMGSNLP 396

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L+ MY KCG + +A  +F+           K++V W +M+G Y +N    E ++L+
Sbjct: 397 VSNALMNMYAKCGSMEEANLIFSQLPV-------KNIVSWNTMIGGYSQNSLPNEALQLF 449

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYSC-LVD 341
             M     KPD+V    V+ AC+    ++ G E     +H + L  G     H +C LVD
Sbjct: 450 LDM-QKQLKPDDVTMACVLPACAGLAALEKGRE-----IHGHILRKGYFSDLHVACALVD 503

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELD 399
           +  + G L  A +L + +  +      + +W  +++    H  GK  +      +   ++
Sbjct: 504 MYVKCGLLVLAQQLFDMIPKK-----DMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIE 558

Query: 400 PH 401
           P 
Sbjct: 559 PE 560



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 146/328 (44%), Gaps = 25/328 (7%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N  I  FC  G    A+K  S      + L+TY  CS L     +K    GK+V + ++ 
Sbjct: 28  NAKICKFCEMGDLRNAMKLLSRSQRSELELNTY--CSVLQLCAELKSLEDGKRVHSIISS 85

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           +G      +G+ L+ +Y     +     +FD I        N L+S Y +   +   + L
Sbjct: 86  NGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGL 145

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              M  LG+  D +T + +L+  A  +     ++VH Y+++     G+   + +SLI  Y
Sbjct: 146 FEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLK--LGFGSYNAVVNSLIAAY 203

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG V  A  +F+    R       DVV W SM+     NG+ +  ++ +  ML  G  
Sbjct: 204 FKCGEVESARILFDELSDR-------DVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVD 256

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE----HYSCLVDLLCRAGELD 350
            D    V V+ AC++ G + LG       +H Y ++ G        + L+D+  + G L+
Sbjct: 257 VDSATLVNVLVACANVGNLTLG-----RALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLN 311

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSA 378
            A ++  +M     G +++  W ++++A
Sbjct: 312 GANEVFVKM-----GETTIVSWTSIIAA 334


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 232/398 (58%), Gaps = 14/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I  + + G    AL  F  M    + +D + LCS+L A  ++K  +FG+ V
Sbjct: 170 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSV 229

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD-EIPVKNSVCANALLSGYCEAKL 167
            + V K G+ S +FVG+AL D+Y+K   +  A  +F  +   +N V    L+ GY E + 
Sbjct: 230 HSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQ 289

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              GL +   +   G++ + FT S+L++ACA  +A E G Q+HA +++   N   D F+ 
Sbjct: 290 IEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMK--INFDEDPFVS 347

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S L++MYGKCGL+ +A+Q F+  G   E       + W S++ V+G++G  K+ IK++E 
Sbjct: 348 SILVDMYGKCGLLEQAIQAFDEIGDPTE-------IAWNSLVSVFGQHGLGKDAIKIFER 400

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M+  G KP+ + F+++++ CSH G V+ G++YF  M   Y + PG EHYSC++DLL RAG
Sbjct: 401 MVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAG 460

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L +A + IN M    +       W + L AC   G  E+GKLAA+K ++L+P N G  V
Sbjct: 461 RLKEAKEFINRMPFEPNAFG----WCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALV 516

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YA    W+++  +R  M++  +KK  G SW++V
Sbjct: 517 LLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 554



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 182/390 (46%), Gaps = 31/390 (7%)

Query: 12  LLICL-----IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCR 63
           LLIC          + L+  Y+ C      G L + LK  +    RN + +  +IS   +
Sbjct: 30  LLICAGYTPCTFLTNHLVNMYSKC------GELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 64  NGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFV 123
           N     A++TF  M + G     +A  S++ A  S+     GKQ+     K G  S +FV
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 124 GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL 183
           GS L D+Y+K   + DA  +F+E+P K+ V   A++ GY +   +   L   + M    +
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV 203

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
             D   L + L AC  L A +FGR VH+ +++      +D+F+ ++L +MY K G +  A
Sbjct: 204 TIDQHVLCSTLGACGALKACKFGRSVHSSVVK--LGFESDIFVGNALTDMYSKAGDMESA 261

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
             VF +          ++VV +T ++  Y      ++ + ++  +   G +P+E  F ++
Sbjct: 262 SNVFGIDSE------CRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSL 315

Query: 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
           I AC++   ++ G +     V     +  P   S LVD+  + G L++A +  +E+    
Sbjct: 316 IKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEI---- 370

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
            G  +   W +L+S     G+  LGK A +
Sbjct: 371 -GDPTEIAWNSLVSV---FGQHGLGKDAIK 396



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 170/383 (44%), Gaps = 49/383 (12%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           DT AL   +      K  R GKQ+ A +  +G+    F+ + L+++Y+K   +  A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +P +N V   A++SG  +   ++  +     M   G     F  S+ +RACA L + E
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G+Q+H   ++    +G+++F+ S+L +MY KCG +  A +VF       E    KD V 
Sbjct: 124 MGKQMHCLALK--FGIGSELFVGSNLEDMYSKCGAMFDACKVF-------EEMPCKDEVS 174

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQV 313
           WT+M+  Y + G F+E +  ++ M+      D+    + + AC            H+  V
Sbjct: 175 WTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV 234

Query: 314 KLGIE---YFEWMVHDYKLEPGPEH-----------------YSCLVDLLCRAGELDKAW 353
           KLG E   +    + D   + G                    Y+CL+D      +++K  
Sbjct: 235 KLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGL 294

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNL 412
            +  E+  +G   +  + + +L+ AC +    E G     + ++++   +  +  +L ++
Sbjct: 295 SVFVELRRQGIEPNEFT-FSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDM 353

Query: 413 YAK-------FCMWDEIGQLREL 428
           Y K          +DEIG   E+
Sbjct: 354 YGKCGLLEQAIQAFDEIGDPTEI 376


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 253/447 (56%), Gaps = 20/447 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHAH  +T  L    +   +RL++ YT C   + LG   +    +  RN + +  +IS 
Sbjct: 31  RVHAHMIKTCYLPP--VYLSTRLIILYTKC---ECLGCARHVFDEMRERNVVSWTAMISG 85

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + + G    AL  F  M       + +   + L++ T       G+Q+ +H+ K  + + 
Sbjct: 86  YSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENH 145

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +FVGS+L+D+YAK   IH+A  +F+ +P ++ V   A++SGY +  L    LEL   +  
Sbjct: 146 IFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQR 205

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  ++ T ++LL A +GL+A + G+QVH++++R  C L   V +Q+SLI+MY KCG +
Sbjct: 206 EGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLR--CELPFYVVLQNSLIDMYSKCGNL 263

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVA 299
             A ++FN    R        V+ W +ML  Y ++G   EV+KL++ M   N  KPD V 
Sbjct: 264 NYARKIFNNMPVR-------TVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVT 316

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           F+ V+S CSH G    G+E F+ M++   ++E G EHY C++DLL RAG +++A++LI +
Sbjct: 317 FLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKK 376

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M        + ++WG+LL AC       +G+    + LE++P N G YV+LSNLYA    
Sbjct: 377 M----PFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGR 432

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEV 445
           W+++  +RELM EK + K+ G SWIE+
Sbjct: 433 WEDVRNVRELMMEKAVIKEPGRSWIEL 459



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 159/325 (48%), Gaps = 26/325 (8%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L    + +  R G++V AH+ K+ +L  V++ + LI LY K   +  A  +FDE+  +N 
Sbjct: 17  LNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNV 76

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V   A++SGY +    +  L L   M     + + FT + +L +C G S  E GRQ+H++
Sbjct: 77  VSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSH 136

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           + ++  N  N +F+ SSL++MY K G + +A  VF     R       DVV  T+++  Y
Sbjct: 137 IFKR--NYENHIFVGSSLLDMYAKAGRIHEARGVFECLPER-------DVVSCTAIISGY 187

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            + G  +E ++L+  +   G   + V + ++++A S    +  G +     VH + L   
Sbjct: 188 AQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQ-----VHSHVLRCE 242

Query: 333 PEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK-FEL 387
              Y    + L+D+  + G L+ A K+ N M  R     +V  W A+L      GK  E+
Sbjct: 243 LPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVR-----TVISWNAMLVGYSKHGKGIEV 297

Query: 388 GKLAA--QKALELDPHNVGIYVMLS 410
            KL    ++  ++ P +V    +LS
Sbjct: 298 VKLFKLMREENKVKPDSVTFLAVLS 322



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 20/184 (10%)

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           + +D + +  LL  C    A   G++VHA+MI+ C      V++ + LI +Y KC  +  
Sbjct: 8   IKFDGYNM--LLNECVNKRAVREGQRVHAHMIKTC--YLPPVYLSTRLIILYTKCECLGC 63

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A  VF+    R       +VV WT+M+  Y + G+  E + L+  ML + T+P+E  F T
Sbjct: 64  ARHVFDEMRER-------NVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFAT 116

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINE 358
           V+S+C+     +LG +     +H +  +   E++    S L+D+  +AG + +A  +   
Sbjct: 117 VLSSCTGFSGFELGRQ-----IHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFEC 171

Query: 359 MLDR 362
           + +R
Sbjct: 172 LPER 175


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 232/398 (58%), Gaps = 14/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I  + + G    AL  F  M    + +D + LCS+L A  ++K  +FG+ V
Sbjct: 105 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSV 164

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD-EIPVKNSVCANALLSGYCEAKL 167
            + V K G+ S +FVG+AL D+Y+K   +  A  +F  +   +N V    L+ GY E + 
Sbjct: 165 HSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQ 224

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              GL +   +   G++ + FT S+L++ACA  +A E G Q+HA +++   N   D F+ 
Sbjct: 225 IEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMK--INFDEDPFVS 282

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S L++MYGKCGL+ +A+Q F+  G   E       + W S++ V+G++G  K+ IK++E 
Sbjct: 283 SILVDMYGKCGLLEQAIQAFDEIGDPTE-------IAWNSLVSVFGQHGLGKDAIKIFER 335

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M+  G KP+ + F+++++ CSH G V+ G++YF  M   Y + PG EHYSC++DLL RAG
Sbjct: 336 MVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAG 395

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L +A + IN M    +       W + L AC   G  E+GKLAA+K ++L+P N G  V
Sbjct: 396 RLKEAKEFINRMPFEPNAFG----WCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALV 451

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YA    W+++  +R  M++  +KK  G SW++V
Sbjct: 452 LLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 489



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 166/345 (48%), Gaps = 17/345 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS   +N     A++TF  M + G     +A  S++ A  S+     GKQ+
Sbjct: 4   RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 63

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G  S +FVGS L D+Y+K   + DA  +F+E+P K+ V   A++ GY +   +
Sbjct: 64  HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEF 123

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L   + M    +  D   L + L AC  L A +FGR VH+ +++      +D+F+ +
Sbjct: 124 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK--LGFESDIFVGN 181

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L +MY K G +  A  VF +          ++VV +T ++  Y      ++ + ++  +
Sbjct: 182 ALTDMYSKAGDMESASNVFGIDSE------CRNVVSYTCLIDGYVETEQIEKGLSVFVEL 235

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G +P+E  F ++I AC++   ++ G +     V     +  P   S LVD+  + G 
Sbjct: 236 RRQGIEPNEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGL 294

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           L++A +  +E+     G  +   W +L+S     G+  LGK A +
Sbjct: 295 LEQAIQAFDEI-----GDPTEIAWNSLVSV---FGQHGLGKDAIK 331



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 139/321 (43%), Gaps = 49/321 (15%)

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +P +N V   A++SG  +   ++  +     M   G     F  S+ +RACA L + E G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           +Q+H   ++    +G+++F+ S+L +MY KCG +  A +VF       E    KD V WT
Sbjct: 61  KQMHCLALK--FGIGSELFVGSNLEDMYSKCGAMFDACKVF-------EEMPCKDEVSWT 111

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQVKL 315
           +M+  Y + G F+E +  ++ M+      D+    + + AC            H+  VKL
Sbjct: 112 AMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKL 171

Query: 316 GIE---YFEWMVHDYKLEPGPEH-----------------YSCLVDLLCRAGELDKAWKL 355
           G E   +    + D   + G                    Y+CL+D      +++K   +
Sbjct: 172 GFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSV 231

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNLYA 414
             E+  +G   +  + + +L+ AC +    E G     + ++++   +  +  +L ++Y 
Sbjct: 232 FVELRRQGIEPNEFT-FSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYG 290

Query: 415 K-------FCMWDEIGQLREL 428
           K          +DEIG   E+
Sbjct: 291 KCGLLEQAIQAFDEIGDPTEI 311


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 244/445 (54%), Gaps = 18/445 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H +    G+ L   +  +S L+  Y  CR   ++G      K     + +    +IS +
Sbjct: 196 IHGYILRHGIALD--VFLKSALIDIYFKCR---DVGMACKIFKQSTNVDIVVCTAIISGY 250

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             NG    AL+ F ++    +  +   L S L A   +     GK++ A++ K G     
Sbjct: 251 VLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERR 310

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            VGSA++D+YAK   +  A  +F  +P K++VC NA+++   +       ++L R M   
Sbjct: 311 HVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGRE 370

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           GL YD  ++SA L ACA L A   G+ +H++MI+      ++VF +S+LI+MYGKCG ++
Sbjct: 371 GLSYDCVSISAALSACANLPALHHGKAIHSFMIKGA--FDSEVFAESALIDMYGKCGNLS 428

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A  VF++   + E       V W S++  YG +G+ +  + L+  ML +G +PD V F+
Sbjct: 429 VARCVFDMMREKNE-------VSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFL 481

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           T++SAC H GQV  GI+YF  M  +Y +    EHY+C+VDL  RAG L++A++ I  M  
Sbjct: 482 TILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNM-- 539

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
               S    +WG LL AC   G  EL ++A++  L+LDP N G YV+LSN++A    W  
Sbjct: 540 --PFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGS 597

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVT 446
           + ++R LMK++G++K  G SWIEV 
Sbjct: 598 VRKIRSLMKKRGVQKVPGYSWIEVN 622



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 179/381 (46%), Gaps = 22/381 (5%)

Query: 36  LGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
            G L++ LK  N     N + +N +I+ F +NG    A   FS M   G+  D+    S 
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L + T     + GK++  ++ + G    VF+ SALID+Y K   +  A  +F +    + 
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V   A++SGY    L    LE+ R +    +  +  TL+++L ACAGL+    G+++HA 
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHAN 300

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           +++    L     + S++++MY KCG +  A Q+F     R+     KD V W +++   
Sbjct: 301 ILKH--GLDERRHVGSAIMDMYAKCGRLDLAYQIF----RRMP---EKDAVCWNAIITNC 351

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD-YKLEP 331
            +NG  +E I L+  M   G   D V+    +SAC++   +  G     +M+   +  E 
Sbjct: 352 SQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEV 411

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
             E  S L+D+  + G L  A  + + M ++   S     W ++++A    G  E+    
Sbjct: 412 FAE--SALIDMYGKCGNLSVARCVFDMMREKNEVS-----WNSIIAAYGSHGHLEVSLAL 464

Query: 392 AQKALE--LDPHNVGIYVMLS 410
             K LE  + P +V    +LS
Sbjct: 465 FHKMLEDGIQPDHVTFLTILS 485



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 165/345 (47%), Gaps = 22/345 (6%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +NV+++ F + G P  A+K F  M       ++    S L+   S   + FG Q+   V 
Sbjct: 41  WNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVI 100

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
             G+     V +AL+ +Y+K   + DA  +F+ +P  N V  N +++G+ +         
Sbjct: 101 SCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASL 160

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M + G+  D  T ++ L +    ++ + G+++H Y++R    L  DVF++S+LI++
Sbjct: 161 LFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIAL--DVFLKSALIDI 218

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KC  V  A ++F       +   N D+V+ T+++  Y  NG   + ++++  +L    
Sbjct: 219 YFKCRDVGMACKIF-------KQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKM 271

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            P+ V   +V+ AC+    + LG E     +  + L+      S ++D+  + G LD A+
Sbjct: 272 SPNAVTLASVLPACAGLATLNLGKE-LHANILKHGLDERRHVGSAIMDMYAKCGRLDLAY 330

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           ++   M ++         W A+++ C   GK        Q+A++L
Sbjct: 331 QIFRRMPEK-----DAVCWNAIITNCSQNGK-------PQEAIDL 363



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 14/211 (6%)

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
           FVGS+LI LYA+   I DA  +FD++P K+ V  N +L+G+ +       +++   M   
Sbjct: 8   FVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNC 67

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
               +  T +++L  CA  + +EFG Q+H  +I   C    D  + ++L+ MY K G ++
Sbjct: 68  QTKPNSITFASVLSICASEALSEFGNQLHGLVIS--CGFHFDPLVANALVAMYSKFGQLS 125

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            AL++FN          + +VV W  M+  + +NG+  E   L+  M+  G  PD + F 
Sbjct: 126 DALKLFNTMP-------DTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFA 178

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           + + + + +  +K G E     +H Y L  G
Sbjct: 179 SFLPSVTESASLKQGKE-----IHGYILRHG 204



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 13/156 (8%)

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D F+ SSLI++Y + G +  A ++F+          NKD VLW  ML  + + G     +
Sbjct: 6   DEFVGSSLIKLYAENGCIEDARRLFDKMP-------NKDCVLWNVMLNGFVKCGEPNSAV 58

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           K++E M    TKP+ + F +V+S C+     + G +    +V        P   + LV +
Sbjct: 59  KVFEDMRNCQTKPNSITFASVLSICASEALSEFGNQ-LHGLVISCGFHFDPLVANALVAM 117

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
             + G+L  A KL N M D     ++V  W  +++ 
Sbjct: 118 YSKFGQLSDALKLFNTMPD-----TNVVTWNGMIAG 148


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/400 (35%), Positives = 235/400 (58%), Gaps = 15/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +  +I+ F +NG    A+  F  M +  + +D Y   S LTA   V   + G
Sbjct: 234 MQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEG 293

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQV A++ ++ +  ++FVGSAL+D+Y K   I  AE +F ++  KN V   A+L GY + 
Sbjct: 294 KQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQN 353

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 +++   M   G++ D FTL +++ +CA L++ E G Q H   +     L + + 
Sbjct: 354 GYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRAL--VSGLISFIT 411

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKL 284
           + ++L+ +YGKCG +  +        HRL  E++  D V WT+++  Y + G   E ++L
Sbjct: 412 VSNALVTLYGKCGSIEDS--------HRLFSEMSYVDEVSWTALVSGYAQFGKANETLRL 463

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +E+ML +G KPD+V F+ V+SACS  G V+ G + FE M+ ++++ P  +HY+C++DL  
Sbjct: 464 FESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFS 523

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG L++A K IN+M      S     W +LLS+C      E+GK AA+  L+L+PHN  
Sbjct: 524 RAGRLEEARKFINKM----PFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTA 579

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            Y++LS++YA    W+E+  LR+ M++KGL+K+ GCSWI+
Sbjct: 580 SYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIK 619



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 187/373 (50%), Gaps = 57/373 (15%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQ 107
           R+ + +N +IS +   G  L ++K ++ M  +G F L+  AL + L  ++       G Q
Sbjct: 104 RDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQ 163

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN----------- 156
           V  HV K G+ S VFVGS L+D+Y+K  L+  A   FDE+P KN V  N           
Sbjct: 164 VHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSR 223

Query: 157 --------------------ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
                               A+++G+ +  L    ++L R M    L+ D +T  ++L A
Sbjct: 224 IEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTA 283

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C G+ A + G+QVHAY+IR   +  +++F+ S+L++MY KC  +  A  VF         
Sbjct: 284 CGGVMALQEGKQVHAYIIR--TDYQDNIFVGSALVDMYCKCKSIKSAETVFR-------- 333

Query: 257 EIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
           ++N K+VV WT+ML  YG+NGY +E +K++  M  NG +PD+    +VIS+C++   ++ 
Sbjct: 334 KMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEE 393

Query: 316 GIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
           G ++     H   L  G   +    + LV L  + G ++ + +L +EM      S     
Sbjct: 394 GAQF-----HCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVS----- 443

Query: 372 WGALLSACHDCGK 384
           W AL+S     GK
Sbjct: 444 WTALVSGYAQFGK 456



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 140/349 (40%), Gaps = 51/349 (14%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I   S L+  Y  C+  K+  T+    + +N +N + +  ++  + +NG    A+K F  
Sbjct: 309 IFVGSALVDMYCKCKSIKSAETV---FRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCD 365

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M  +GI  D + L S +++  ++     G Q       SG +S + V +AL+ LY K   
Sbjct: 366 MQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGS 425

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I D+  +F E+   + V   AL+SGY +       L L   M A G   D  T   +L A
Sbjct: 426 IEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSA 485

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+     + G Q+   MI                           K  ++  +  H    
Sbjct: 486 CSRAGLVQKGNQIFESMI---------------------------KEHRIIPIEDH---- 514

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
                   +T M+ ++ R G  +E  K    M  +   PD + + +++S+C     +++G
Sbjct: 515 --------YTCMIDLFSRAGRLEEARKFINKMPFS---PDAIGWASLLSSCRFHRNMEIG 563

Query: 317 IEYFEWMVHD-YKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
               +W      KLEP     Y  L  +    G+ ++   L   M D+G
Sbjct: 564 ----KWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKG 608



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 139/338 (41%), Gaps = 72/338 (21%)

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           +K  R  K++  H+ K+     +F+ + L+  YAK   I  A  +FD++P +N    N L
Sbjct: 22  LKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTL 81

Query: 159 LSGYCE-------------------------AKLWAGGLELVRLMPALGL-------DYD 186
           LS Y +                            +AG   L++ + A  L       + +
Sbjct: 82  LSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLN 141

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
              LS +L   +       G QVH ++++      + VF+ S L++MY K GLV  A Q 
Sbjct: 142 RIALSTMLILASKQGCVHLGLQVHGHVVK--FGFQSYVFVGSPLVDMYSKTGLVFCARQA 199

Query: 247 FN-------------LAG----HRLEGEIN-------KDVVLWTSMLGVYGRNGYFKEVI 282
           F+             +AG     R+E           KD + WT+M+  + +NG  +E I
Sbjct: 200 FDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAI 259

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
            L+  M +   + D+  F +V++AC     ++ G +     VH Y +    +      S 
Sbjct: 260 DLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQ-----VHAYIIRTDYQDNIFVGSA 314

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           LVD+ C+   +  A     E + R     +V  W A+L
Sbjct: 315 LVDMYCKCKSIKSA-----ETVFRKMNCKNVVSWTAML 347


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 230/398 (57%), Gaps = 14/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I  + + G    AL  F  M    + +D + LCS+L A  ++K  +FG+ V
Sbjct: 170 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSV 229

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD-EIPVKNSVCANALLSGYCEAKL 167
            + V K G+ S +FVG+AL D+Y+K   +  A  +F  +   +N V    L+ GY E + 
Sbjct: 230 HSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQ 289

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              GL +   +   G++ + FT S+L++ACA  +A E G Q+HA +++   N   D F+ 
Sbjct: 290 IEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMK--INFDEDPFVS 347

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S L++MYGKCGL+  A+Q F+  G   E       + W S++ V+G++G  K+ IK +E 
Sbjct: 348 SILVDMYGKCGLLEHAIQAFDEIGDPTE-------IAWNSLVSVFGQHGLGKDAIKFFER 400

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M+  G KP+ + F+++++ CSH G V+ G++YF  M   Y + PG EHYSC++DLL RAG
Sbjct: 401 MVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAG 460

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L +A + IN M    +       W + L AC   G  E+GKLAA+K ++L+P N G  V
Sbjct: 461 RLKEAKEFINRMPFEPNAFG----WCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALV 516

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YA    W+++  +R  M++  +KK  G SW++V
Sbjct: 517 LLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 554



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 181/390 (46%), Gaps = 31/390 (7%)

Query: 12  LLICL-----IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCR 63
           LLIC          + L+  Y+ C      G L + LK  +    RN + +  +IS   +
Sbjct: 30  LLICAGYTPCTFLTNHLVNMYSKC------GELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 64  NGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFV 123
           N     A++TF  M + G     +A  S++ A  S+     GKQ+     K G  S +FV
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 124 GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL 183
           GS L D+Y+K   + DA  +F+E+P K+ V   A++ GY +   +   L   + M    +
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV 203

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
             D   L + L AC  L A +FGR VH+ +++      +D+F+ ++L +MY K G +  A
Sbjct: 204 TIDQHVLCSTLGACGALKACKFGRSVHSSVVK--LGFESDIFVGNALTDMYSKAGDMESA 261

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
             VF +          ++VV +T ++  Y      ++ + ++  +   G +P+E  F ++
Sbjct: 262 SNVFGIDSE------CRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSL 315

Query: 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
           I AC++   ++ G +     V     +  P   S LVD+  + G L+ A +  +E+    
Sbjct: 316 IKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEI---- 370

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
            G  +   W +L+S     G+  LGK A +
Sbjct: 371 -GDPTEIAWNSLVSV---FGQHGLGKDAIK 396



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 170/383 (44%), Gaps = 49/383 (12%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           DT AL   +      K  R GKQ+ A +  +G+    F+ + L+++Y+K   +  A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +P +N V   A++SG  +   ++  +     M   G     F  S+ +RACA L + E
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G+Q+H   ++    +G+++F+ S+L +MY KCG +  A +VF       E    KD V 
Sbjct: 124 MGKQMHCLALK--FGIGSELFVGSNLEDMYSKCGAMFDACKVF-------EEMPCKDEVS 174

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQV 313
           WT+M+  Y + G F+E +  ++ M+      D+    + + AC            H+  V
Sbjct: 175 WTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV 234

Query: 314 KLGIE---YFEWMVHDYKLEPGPEH-----------------YSCLVDLLCRAGELDKAW 353
           KLG E   +    + D   + G                    Y+CL+D      +++K  
Sbjct: 235 KLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGL 294

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNL 412
            +  E+  +G   +  + + +L+ AC +    E G     + ++++   +  +  +L ++
Sbjct: 295 SVFVELRRQGIEPNEFT-FSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDM 353

Query: 413 YAK-------FCMWDEIGQLREL 428
           Y K          +DEIG   E+
Sbjct: 354 YGKCGLLEHAIQAFDEIGDPTEI 376


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/400 (36%), Positives = 221/400 (55%), Gaps = 15/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I    +NG    A++ F  M V G+ +D Y   S L A   +     GKQ+
Sbjct: 233 KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQI 292

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + ++ +   ++VGSALID+Y K   +H A+ +FD +  KN V   A++ GY +    
Sbjct: 293 HACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRA 352

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +++   M   G+D DH+TL   + ACA +S+ E G Q H   I     L + V + +
Sbjct: 353 EEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAI--TSGLIHYVTVSN 410

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           SL+ +YGKCG +  + ++FN        E+N +D V WT+M+  Y + G   E I+L++ 
Sbjct: 411 SLVTLYGKCGDIDDSTRLFN--------EMNVRDAVSWTAMVSAYAQFGRAVETIQLFDK 462

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M+ +G KPD V    VISACS  G V+ G  YF+ M  +Y + P   HYSC++DL  R+G
Sbjct: 463 MVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSG 522

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L++A + IN M            W  LLSAC + G  E+GK AA+  +ELDPH+   Y 
Sbjct: 523 RLEEAMRFINGM----PFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYT 578

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LS++YA    WD + QLR  M+EK +KK+ G SWI+  G
Sbjct: 579 LLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKG 618



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 182/384 (47%), Gaps = 54/384 (14%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLT 94
           +  + +  + L  R+ + +NV+I  +  +G    A+K + + M      L    L + L 
Sbjct: 88  ISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLK 147

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
            S+S      GKQ+   V K G+ S + VGS L+ +YA +  I DA+ +F  +  +N+V 
Sbjct: 148 LSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVM 207

Query: 155 ANALLSGYC-----------------EAKLWAG-------------GLELVRLMPALGLD 184
            N+L+ G                   ++  WA               +E  R M   GL 
Sbjct: 208 YNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLK 267

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D +   ++L AC GL A   G+Q+HA +IR   N  + +++ S+LI+MY KC  +  A 
Sbjct: 268 MDQYPFGSVLPACGGLGAINEGKQIHACIIR--TNFQDHIYVGSALIDMYCKCKCLHYAK 325

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            VF+    R++    K+VV WT+M+  YG+ G  +E +K++  M  +G  PD       I
Sbjct: 326 TVFD----RMK---QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAI 378

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEML 360
           SAC++   ++ G ++     H   +  G  HY    + LV L  + G++D + +L NEM 
Sbjct: 379 SACANVSSLEEGSQF-----HGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN 433

Query: 361 DRGHGSSSVSMWGALLSACHDCGK 384
            R     +VS W A++SA    G+
Sbjct: 434 VR----DAVS-WTAMVSAYAQFGR 452



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 135/318 (42%), Gaps = 46/318 (14%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  +N + +  ++  + + G    A+K F  M   GI  D Y L  +++A  +V     G
Sbjct: 331 MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG 390

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            Q       SG +  V V ++L+ LY K   I D+  +F+E+ V+++V   A++S Y + 
Sbjct: 391 SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQF 450

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 ++L   M   GL  D  TL+ ++ AC+                           
Sbjct: 451 GRAVETIQLFDKMVQHGLKPDGVTLTGVISACS--------------------------- 483

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
                     + GLV K  + F L     E  I   +  ++ M+ ++ R+G  +E ++  
Sbjct: 484 ----------RAGLVEKGQRYFKLMTS--EYGIVPSIGHYSCMIDLFSRSGRLEEAMRFI 531

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLC 344
             M      PD + + T++SAC + G +++G    E ++   +L+P  P  Y+ L  +  
Sbjct: 532 NGMPF---PPDAIGWTTLLSACRNKGNLEIGKWAAESLI---ELDPHHPAGYTLLSSIYA 585

Query: 345 RAGELDKAWKLINEMLDR 362
             G+ D   +L   M ++
Sbjct: 586 SKGKWDSVAQLRRGMREK 603



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 138/334 (41%), Gaps = 48/334 (14%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           + +T+   + + A   +K + + ++V   + +     ++F  + L+  Y+K  LI + E 
Sbjct: 38  YPETFLYNNIVHAYALMKSSTYARRVFDRIPQP----NLFSWNNLLLAYSKAGLISEMES 93

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-LMPALGLDYDHFTLSALLRACAGLS 201
            F+++P ++ V  N L+ GY  + L    ++    +M     +    TL  +L+  +   
Sbjct: 94  TFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNG 153

Query: 202 AAEFGRQVHAYMIR--------------------KCCNLGNDVF---------MQSSLIE 232
               G+Q+H  +I+                     C +    VF         M +SL+ 
Sbjct: 154 HVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMG 213

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
               CG++  ALQ+F          + KD V W +M+    +NG  KE I+ +  M + G
Sbjct: 214 GLLACGMIEDALQLFR--------GMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            K D+  F +V+ AC   G +  G +    ++     +      S L+D+ C+   L  A
Sbjct: 266 LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGSALIDMYCKCKCLHYA 324

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
             + + M  +     +V  W A++      G+ E
Sbjct: 325 KTVFDRMKQK-----NVVSWTAMVVGYGQTGRAE 353


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 143/400 (35%), Positives = 236/400 (59%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +N +I    +NG    AL     M   G     + + S L A  +       
Sbjct: 125 MPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC 184

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + + A   K+    +VFV +AL+D+YAK  L+ DA  +F+ +P ++ V  +++ +GY + 
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQN 244

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +++   L L R     GL +D F +S+++ ACAGL+A   G+QV+A + +      +++F
Sbjct: 245 EMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKS--GFCSNIF 302

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + SSLI+MY KCG + ++ +VF     R       +VVLW +M+    R+    EV+ L+
Sbjct: 303 VASSLIDMYAKCGGIEESYKVFRDVEKR-------NVVLWNAMISGLSRHARSLEVMILF 355

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M   G  P++V FV+V+SAC H G VK G +YF+ M  ++ L P   HYSC+VD L R
Sbjct: 356 EKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSR 415

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG++ +A+ LI+++      ++S SMWG+LL++C   G  EL ++AA+K  +++PHN G 
Sbjct: 416 AGQIFEAYDLISKL----PFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGN 471

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y++LSN+YA    WDE+ ++R+L+KE  +KK+ G SWIE+
Sbjct: 472 YLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEI 511



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 135/273 (49%), Gaps = 15/273 (5%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK   A +   G  + +   + LI++Y+K   +  A  +FDE+P ++ V  N ++    +
Sbjct: 83  GKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQ 142

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L+L+  M   G  +  FT+S++L ACA   A    + +HA+ I+   +L  +V
Sbjct: 143 NGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDL--NV 200

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++L+++Y KCGL+  A+ VF       E   ++ VV W+SM   Y +N  +++ + L
Sbjct: 201 FVATALLDVYAKCGLMKDAVCVF-------ESMPDRSVVTWSSMAAGYVQNEMYEQALAL 253

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +      G K D+    +VI AC+    +  G +    ++            S L+D+  
Sbjct: 254 FRKAWETGLKHDQFLMSSVICACAGLAAMIEG-KQVNALLSKSGFCSNIFVASSLIDMYA 312

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + G +++++K+  ++  R     +V +W A++S
Sbjct: 313 KCGGIEESYKVFRDVEKR-----NVVLWNAMIS 340


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 143/392 (36%), Positives = 227/392 (57%), Gaps = 13/392 (3%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           + +IS +  N     A+K F ++   GI  +   + S+L A  S+   R G+++  +V K
Sbjct: 419 STMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLK 478

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           + +    +V SAL+D+Y+K   +  +  MF ++  K+ V  N+++S + +       L+L
Sbjct: 479 NAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDL 538

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M   G+ Y++ T+S++L ACAGL A  +G+++H  +I+    +  D+F +S+LI+MY
Sbjct: 539 FRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKG--PIRADLFAESALIDMY 596

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
           GKCG +  AL+VF       E    K+ V W S++  YG +G  KE + L   M   G K
Sbjct: 597 GKCGNLELALRVF-------EHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFK 649

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
            D V F+ +ISAC+H GQV+ G+  F  M  +Y +EP  EH SC+VDL  RAG+LDKA +
Sbjct: 650 ADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQ 709

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
            I +M  +        +WGALL AC      EL ++A+Q+  +LDPHN G YV++SN+ A
Sbjct: 710 FIADMPFK----PDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINA 765

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
               WD + ++R LMK+K ++K  G SW++V 
Sbjct: 766 VAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVN 797



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 172/339 (50%), Gaps = 26/339 (7%)

Query: 46  LNPRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           L PR+ L  +N +IS   +NG    AL+ F  M   G+  D+  L S L A T +   + 
Sbjct: 308 LMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQ 367

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK++  ++ ++     VF+ SAL+D+Y K   +  A+ +FD     + V  + ++SGY  
Sbjct: 368 GKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVL 427

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            ++    +++ R + ALG+  +   +++ L ACA ++A   G+++H Y+++         
Sbjct: 428 NRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYE--GRC 485

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           +++S+L++MY KCG +       +L+ +       KD V W SM+  + +NG  +E + L
Sbjct: 486 YVESALMDMYSKCGRL-------DLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDL 538

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-----SCL 339
           +  M+M G K + V   +++SAC+    +  G E     +H   ++ GP        S L
Sbjct: 539 FRQMIMEGVKYNNVTISSILSACAGLPAIYYGKE-----IHGIIIK-GPIRADLFAESAL 592

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +D+  + G L+ A ++   M ++   S     W +++SA
Sbjct: 593 IDMYGKCGNLELALRVFEHMPEKNEVS-----WNSIISA 626



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 163/345 (47%), Gaps = 23/345 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+ + +NV++  + + G    A+  F  M   G   +   L   L+   +  D   G
Sbjct: 208 MDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSG 267

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            Q+     K G    V V + L+ +YAK   + +A  +F  +P  + V  N ++SG  + 
Sbjct: 268 VQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQN 327

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    L L   M   GL  D  TL++LL A   L+  + G+++H Y++R C ++  DVF
Sbjct: 328 GLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHV--DVF 385

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L+++Y KC  V  A  VF       +   + DVV+ ++M+  Y  N   +  +K++
Sbjct: 386 LVSALVDIYFKCRDVRMAQNVF-------DATKSIDVVIGSTMISGYVLNRMSEAAVKMF 438

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
             +L  G KP+ V   + + AC+    +++G E     +H Y L+   E      S L+D
Sbjct: 439 RYLLALGIKPNAVMVASTLPACASMAAMRIGQE-----LHGYVLKNAYEGRCYVESALMD 493

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           +  + G LD +  + ++M      +     W +++S+    G+ E
Sbjct: 494 MYSKCGRLDLSHYMFSKM-----SAKDEVTWNSMISSFAQNGEPE 533



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 146/331 (44%), Gaps = 14/331 (4%)

Query: 1   NVHAHQFETGLLLIC---LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVV 57
            +HA    +GLL          Q+RL+  Y   R  ++   + + L        LP+N +
Sbjct: 57  RIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWL 116

Query: 58  ISDFCRNGSPLYALKTFSFM--HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
           I  F   G    A+  +  M  H      D + L   + +  ++     G+ V       
Sbjct: 117 IRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRAL 176

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G    ++VGSALI +YA   L+  A  +FD +  ++ V  N ++ GY +A   A  + L 
Sbjct: 177 GLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLF 236

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           R+M A G D +  TL+  L  CA  +    G Q+H   ++    L  +V + ++L+ MY 
Sbjct: 237 RVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKY--GLEPEVAVANTLVSMYA 294

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KC  + +A ++F L           D+V W  M+    +NG   + ++L+  M  +G +P
Sbjct: 295 KCQCLEEAWRLFGLMP-------RDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQP 347

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           D V   +++ A +     K G E   ++V +
Sbjct: 348 DSVTLASLLPALTELNGFKQGKEIHGYIVRN 378



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 1/200 (0%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ ++ + +N +IS F +NG P  AL  F  M + G+  +   + S L+A   +    +G
Sbjct: 511 MSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYG 570

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   + K    + +F  SALID+Y K   +  A  +F+ +P KN V  N+++S Y   
Sbjct: 571 KEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAH 630

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    ++L+  M   G   DH T  AL+ ACA     + G ++   M  +  ++   V 
Sbjct: 631 GLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEE-YHIEPQVE 689

Query: 226 MQSSLIEMYGKCGLVTKALQ 245
             S ++++Y + G + KA+Q
Sbjct: 690 HLSCMVDLYSRAGKLDKAMQ 709


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 164/452 (36%), Positives = 246/452 (54%), Gaps = 33/452 (7%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTC----RHKKNLGTLTNCLKFLNPRNPLPFNV 56
            +  H FE+ + +      Q+ L+  Y  C    R     G L +       R  + +  
Sbjct: 198 QIFRHGFESDVFV------QNGLVALYAKCGEIVRANAVFGRLVD-------RTIVSWTS 244

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS + +NG P+ AL+ FS M    +  D  AL S L A T V+D   GK +   V K G
Sbjct: 245 IISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMG 304

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
                 +  +L  LYAK   +  A L F+++   + +  NA++SGY +       +EL R
Sbjct: 305 LECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFR 364

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
           LM +  +  D  T+++ + ACA + + E  R +  Y+        NDV + +SLI+ Y K
Sbjct: 365 LMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYI--SMSEFRNDVIVNTSLIDTYAK 422

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG V  A  VF+    R+    +KDVV+W++M+  YG +G  +E I L+ AM   G  P+
Sbjct: 423 CGSVDMARFVFD----RIP---DKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPN 475

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
           +V FV +++AC ++G V+ G + F  M  DY +EP  +HY+C+VDLL RAG LD+A+  +
Sbjct: 476 DVTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFV 534

Query: 357 NEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
             M ++ G     VS+WGALLSAC       LG+ AA++   LDP+N G YV LSNLYA 
Sbjct: 535 MNMPIEPG-----VSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYAS 589

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            C+WD + ++R LM+EKGL K +G S IE+ G
Sbjct: 590 SCLWDCVAKVRVLMREKGLTKHLGYSVIEING 621



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 176/385 (45%), Gaps = 28/385 (7%)

Query: 35  NLGTLTNCLKFLNPRNPLP----FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALC 90
           N+G ++ C + L  + P P    +N ++  + R+G   +A++ ++ M V  +  D ++  
Sbjct: 119 NIGEVS-CARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFP 177

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
             L A +++     G++V   + + G+ S VFV + L+ LYAK   I  A  +F  +  +
Sbjct: 178 CVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDR 237

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
             V   +++SGY +       L +   M    +  D   L ++LRA   +   E G+ +H
Sbjct: 238 TIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIH 297

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
             +I+       D+ +  SL  +Y KCG V  A   FN    ++E   N  ++ W +M+ 
Sbjct: 298 GCVIKMGLECEFDLLI--SLTSLYAKCGHVMVARLFFN----QVE---NPSLIFWNAMIS 348

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y +NGY +E I+L+  M     +PD +   + I+AC+  G ++L      WM     + 
Sbjct: 349 GYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELA----RWMDEYISMS 404

Query: 331 PGPEHY---SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKF 385
                    + L+D   + G +D A  + + + D+      V +W A++     H  G+ 
Sbjct: 405 EFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDK-----DVVVWSAMMVGYGLHGQGRE 459

Query: 386 ELGKLAAQKALELDPHNVGIYVMLS 410
            +    A +   + P++V    +L+
Sbjct: 460 SIILFHAMRQAGVSPNDVTFVGLLT 484



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 107/211 (50%), Gaps = 9/211 (4%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            Q+ A +  +G     F+ + L++  + +  +  A  +FD+ P  +    NA++  Y   
Sbjct: 92  NQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRH 151

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +   +E+   M    +  D F+   +L+AC+ L A E GR+VH  + R      +DVF
Sbjct: 152 GFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRH--GFESDVF 209

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q+ L+ +Y KCG + +A  VF     RL   +++ +V WTS++  Y +NG   E ++++
Sbjct: 210 VQNGLVALYAKCGEIVRANAVFG----RL---VDRTIVSWTSIISGYAQNGQPIEALRIF 262

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
             M     +PD +A V+V+ A +    ++ G
Sbjct: 263 SEMRKTNVRPDWIALVSVLRAYTDVEDLEHG 293


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 154/427 (36%), Positives = 241/427 (56%), Gaps = 17/427 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +   +RL+  Y  C     L    N L  +  R+ + +  +IS + +    + AL  F  
Sbjct: 45  VFLGTRLVTMYVRC---GALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIK 101

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G   + Y L + LT+ +  +    GKQV + + K+ + S +FVGS+L+D+YAK   
Sbjct: 102 MLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSEN 161

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I +A  +FD +P ++ V   A++SGY +  L    L+L R + + G+  +H T + L+ A
Sbjct: 162 IQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTA 221

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            +GL++ ++G+QVHA ++RK   L   V +Q+SLI+MY KCG +  + +VF+        
Sbjct: 222 LSGLASLDYGKQVHALILRK--ELPFFVALQNSLIDMYSKCGKLLYSRRVFD-------N 272

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            + + VV W +ML  YGR+G   EVI L++  L    KPD V  + V+S CSH G V  G
Sbjct: 273 MLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTLLAVLSGCSHGGLVDEG 331

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           ++ F+ +V +        HY C++DLL R+G L+KA  LI  M       S+ S+WG+LL
Sbjct: 332 LDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENM----PFESTPSIWGSLL 387

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
            AC       +G+L AQK LE++P N G YV+LSN+YA   MW ++ ++R+LM EK + K
Sbjct: 388 GACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTK 447

Query: 437 DVGCSWI 443
           + G SWI
Sbjct: 448 EPGQSWI 454



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 154/312 (49%), Gaps = 26/312 (8%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+QV A +  + +  +VF+G+ L+ +Y +   + DA  + D +P ++ V    ++SGY +
Sbjct: 29  GRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQ 88

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            +     L+L   M   G   + +TL+ +L +C+G  +   G+QVH+ +++   N  + +
Sbjct: 89  TERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVK--TNFESHM 146

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ SSL++MY K   + +A +VF+    R       DVV  T+++  Y + G  +E + L
Sbjct: 147 FVGSSLLDMYAKSENIQEARRVFDTLPER-------DVVSCTAIISGYAQKGLDEEALDL 199

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLV 340
           +  +   G + + V F T+++A S    +  G +     VH   L      +    + L+
Sbjct: 200 FRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQ-----VHALILRKELPFFVALQNSLI 254

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALEL 398
           D+  + G+L  + ++ + ML+R     SV  W A+L     H  G  E+  L      E+
Sbjct: 255 DMYSKCGKLLYSRRVFDNMLER-----SVVSWNAMLMGYGRHGLGH-EVISLFKDLHKEV 308

Query: 399 DPHNVGIYVMLS 410
            P +V +  +LS
Sbjct: 309 KPDSVTLLAVLS 320


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 143/403 (35%), Positives = 226/403 (56%), Gaps = 15/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + +  R+ + +  +++ F +NG    AL+ F  M   GI +D Y   S LTA  ++   
Sbjct: 229 FEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSAL 288

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GKQ+ A++ ++ +  +VFVGSAL+D+Y+K   I  AE +F  +  KN +   AL+ GY
Sbjct: 289 EQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGY 348

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       + +   M   G+D D +TL +++ +CA L++ E G Q H   +     L +
Sbjct: 349 GQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLAL--VSGLMH 406

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEV 281
            + + ++L+ +YGKCG +  A        HRL  E++  D V WT+++  Y + G  KE 
Sbjct: 407 YITVSNALVTLYGKCGSIEDA--------HRLFDEMSFHDQVSWTALVSGYAQFGRAKET 458

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           I L+E ML  G KPD V F+ V+SACS  G V+ G  YF  M  D+ + P  +HY+C++D
Sbjct: 459 IDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMID 518

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           L  R+G+L +A + I +M            WG LLSAC   G  E+GK AA+  LE+DP 
Sbjct: 519 LYSRSGKLKEAEEFIKQMPMHPDAIG----WGTLLSACRLRGDMEIGKWAAENLLEIDPQ 574

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           N   YV+L +++A    W+E+ QLR  M+++ +KK+ GCSWI+
Sbjct: 575 NPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIK 617



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 191/394 (48%), Gaps = 56/394 (14%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDT 86
           +T  H + L  +      +  R+ + +N VI+ F   GS   A++ + + +        +
Sbjct: 80  STLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPS 139

Query: 87  YALCSSLT-ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
               S++  A++++ D   GKQ    + + G+ ++ FVGS L+D+YAK+ L+ DA+  FD
Sbjct: 140 RITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFD 199

Query: 146 EIPVKNSVCANALL-------------------------------SGYCEAKLWAGGLEL 174
           E+  KN V  N ++                               +G+ +  L +  LE+
Sbjct: 200 EVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEI 259

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M   G+  D +T  ++L AC  LSA E G+Q+HAY+IR      ++VF+ S+L++MY
Sbjct: 260 FRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIR--TRYDDNVFVGSALVDMY 317

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KC  +  A  VF     R+     K+++ WT+++  YG+NG  +E ++++  M  +G  
Sbjct: 318 SKCRSIKLAETVFR----RM---TCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELD 350
           PD+    +VIS+C++   ++ G ++     H   L  G  HY    + LV L  + G ++
Sbjct: 371 PDDYTLGSVISSCANLASLEEGAQF-----HCLALVSGLMHYITVSNALVTLYGKCGSIE 425

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            A +L +EM      S     W AL+S     G+
Sbjct: 426 DAHRLFDEMSFHDQVS-----WTALVSGYAQFGR 454


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 154/427 (36%), Positives = 241/427 (56%), Gaps = 17/427 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +   +RL+  Y  C     L    N L  +  R+ + +  +IS + +    + AL  F  
Sbjct: 45  VFLGTRLVTMYVRC---GALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIK 101

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G   + Y L + LT+ +  +    GKQV + + K+ + S +FVGS+L+D+YAK   
Sbjct: 102 MLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSEN 161

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I +A  +FD +P ++ V   A++SGY +  L    L+L R + + G+  +H T + L+ A
Sbjct: 162 IQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTA 221

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            +GL++ ++G+QVHA ++RK   L   V +Q+SLI+MY KCG +  + +VF+        
Sbjct: 222 LSGLASLDYGKQVHALILRK--ELPFFVALQNSLIDMYSKCGKLLYSRRVFD-------N 272

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            + + VV W +ML  YGR+G   EVI L++  L    KPD V  + V+S CSH G V  G
Sbjct: 273 MLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTLLAVLSGCSHGGLVDEG 331

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           ++ F+ +V +        HY C++DLL R+G L+KA  LI  M       S+ S+WG+LL
Sbjct: 332 LDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENM----PFESTPSIWGSLL 387

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
            AC       +G+L AQK LE++P N G YV+LSN+YA   MW ++ ++R+LM EK + K
Sbjct: 388 GACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTK 447

Query: 437 DVGCSWI 443
           + G SWI
Sbjct: 448 EPGQSWI 454



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 160/326 (49%), Gaps = 26/326 (7%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           +++TA    +    G+QV A +  + +  +VF+G+ L+ +Y +   + DA  + D +P +
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V    ++SGY + +     L+L   M   G   + +TL+ +L +C+G  +   G+QVH
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVH 134

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           + +++   N  + +F+ SSL++MY K   + +A +VF+    R       DVV  T+++ 
Sbjct: 135 SLLVK--TNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPER-------DVVSCTAIIS 185

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y + G  +E + L+  +   G + + V F T+++A S    +  G +     VH   L 
Sbjct: 186 GYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQ-----VHALILR 240

Query: 331 PGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGK 384
                +    + L+D+  + G+L  + ++ + ML+R     SV  W A+L     H  G 
Sbjct: 241 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER-----SVVSWNAMLMGYGRHGLGH 295

Query: 385 FELGKLAAQKALELDPHNVGIYVMLS 410
            E+  L      E+ P +V +  +LS
Sbjct: 296 -EVISLFKDLHKEVKPDSVTLLAVLS 320


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 154/427 (36%), Positives = 241/427 (56%), Gaps = 17/427 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +   +RL+  Y  C     L    N L  +  R+ + +  +IS + +    + AL  F  
Sbjct: 77  VFLGTRLVTMYVRC---GALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIK 133

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G   + Y L + LT+ +  +    GKQV + + K+ + S +FVGS+L+D+YAK   
Sbjct: 134 MLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSEN 193

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I +A  +FD +P ++ V   A++SGY +  L    L+L R + + G+  +H T + L+ A
Sbjct: 194 IQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTA 253

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            +GL++ ++G+QVHA ++RK   L   V +Q+SLI+MY KCG +  + +VF+        
Sbjct: 254 LSGLASLDYGKQVHALILRK--ELPFFVALQNSLIDMYSKCGKLLYSRRVFD-------N 304

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            + + VV W +ML  YGR+G   EVI L++  L    KPD V  + V+S CSH G V  G
Sbjct: 305 MLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTLLAVLSGCSHGGLVDEG 363

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           ++ F+ +V +        HY C++DLL R+G L+KA  LI  M       S+ S+WG+LL
Sbjct: 364 LDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENM----PFESTPSIWGSLL 419

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
            AC       +G+L AQK LE++P N G YV+LSN+YA   MW ++ ++R+LM EK + K
Sbjct: 420 GACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTK 479

Query: 437 DVGCSWI 443
           + G SWI
Sbjct: 480 EPGQSWI 486



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 167/346 (48%), Gaps = 26/346 (7%)

Query: 71  LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL 130
           L+  S M + G     +   +++TA    +    G+QV A +  + +  +VF+G+ L+ +
Sbjct: 27  LRAASGMALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTM 86

Query: 131 YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
           Y +   + DA  + D +P ++ V    ++SGY + +     L+L   M   G   + +TL
Sbjct: 87  YVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTL 146

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           + +L +C+G  +   G+QVH+ +++   N  + +F+ SSL++MY K   + +A +VF+  
Sbjct: 147 ATVLTSCSGPQSIYQGKQVHSLLVK--TNFESHMFVGSSLLDMYAKSENIQEARRVFDTL 204

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
             R       DVV  T+++  Y + G  +E + L+  +   G + + V F T+++A S  
Sbjct: 205 PER-------DVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGL 257

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
             +  G +     VH   L      +    + L+D+  + G+L  + ++ + ML+R    
Sbjct: 258 ASLDYGKQ-----VHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER---- 308

Query: 367 SSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            SV  W A+L     H  G  E+  L      E+ P +V +  +LS
Sbjct: 309 -SVVSWNAMLMGYGRHGLGH-EVISLFKDLHKEVKPDSVTLLAVLS 352


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/400 (35%), Positives = 222/400 (55%), Gaps = 15/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + ++ +I    +NG    A++ F  M + G+ +D Y   S L A   +     G+Q+
Sbjct: 230 KDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQI 289

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + ++     ++VGSALID+Y K   +H A+ +FD +  KN V   A++ GY +    
Sbjct: 290 HACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRA 349

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +++   M   G+D DH+TL   + ACA +S+ E G Q H   I     L + + + +
Sbjct: 350 GEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAI--TAGLIHYITVSN 407

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           SL+ +YGKCG +  + ++FN        E+N +D V WT+M+  Y + G   E I+L++ 
Sbjct: 408 SLVTLYGKCGDIDDSTRLFN--------EMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDK 459

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M+  G KPD V    VISACS  G V+ G  YFE M+++Y + P   HYSC++DL  R+G
Sbjct: 460 MVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSG 519

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            +++A   IN M  R         W  LLSAC + G  E+GK AA+  +ELDPH+   Y 
Sbjct: 520 RIEEAMGFINGMPFR----PDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYT 575

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LS++YA    WD + QLR  MKEK ++K+ G SWI+  G
Sbjct: 576 LLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKG 615



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 186/399 (46%), Gaps = 57/399 (14%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHV 79
           + L+L Y+   H   L  +    + L  R+ + +NV+I  +  +G    A+K + + M  
Sbjct: 73  NNLLLAYSKSGH---LSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKD 129

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
               L    L + L  S+S      GKQ+   V K G+ S + VGS L+D+Y+K+  I D
Sbjct: 130 FSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISD 189

Query: 140 AELMFDEIPVKNSVCAN------------------------------ALLSGYCEAKLWA 169
           A+ +F  +  +N+V  N                              A++ G  +  +  
Sbjct: 190 AKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEK 249

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             +E  R M   GL  D +   ++L AC GL A   GRQ+HA +IR   NL + +++ S+
Sbjct: 250 EAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIR--TNLQDHIYVGSA 307

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           LI+MY KC  +  A  VF+    R++    K+VV WT+M+  YG+ G   E +K++  M 
Sbjct: 308 LIDMYCKCKCLHYAKTVFD----RMK---QKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQ 360

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCR 345
            +G  PD       ISAC++   ++ G ++     H   +  G  HY    + LV L  +
Sbjct: 361 RSGIDPDHYTLGQAISACANISSLEEGSQF-----HGKAITAGLIHYITVSNSLVTLYGK 415

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            G++D + +L NEM  R   S     W A++SA    G+
Sbjct: 416 CGDIDDSTRLFNEMNVRDEVS-----WTAMVSAYAQFGR 449



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 153/376 (40%), Gaps = 64/376 (17%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  +N + +  ++  + + G    A+K F  M   GI  D Y L  +++A  ++     G
Sbjct: 328 MKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEG 387

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            Q       +G +  + V ++L+ LY K   I D+  +F+E+ V++ V   A++S Y + 
Sbjct: 388 SQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQF 447

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 ++L   M  LGL  D  TL+ ++ AC+     E G++    MI +         
Sbjct: 448 GRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINE--------- 498

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
                   YG          +    GH            ++ M+ ++ R+G  +E +   
Sbjct: 499 --------YG----------IVPSNGH------------YSCMIDLFSRSGRIEEAMGFI 528

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLC 344
             M     +PD + + T++SAC + G +++G    E ++   +L+P  P  Y+ L  +  
Sbjct: 529 NGMPF---RPDAIGWTTLLSACRNKGNLEIGKWAAESLI---ELDPHHPAGYTLLSSIYA 582

Query: 345 RAGELDKAWKLINEMLDRG----HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
             G+ D   +L   M ++      G S +   G L S   D               E  P
Sbjct: 583 SKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADD--------------ESSP 628

Query: 401 HNVGIYVMLSNLYAKF 416
           ++  IY  L  LY K 
Sbjct: 629 YSDQIYAKLEELYQKI 644



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 134/312 (42%), Gaps = 41/312 (13%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-LM 178
           ++F  + L+  Y+K   + + E  F+++P ++ V  N L+ GY  + L    ++    +M
Sbjct: 68  NLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 127

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM--QSSLIEMYGK 236
                +    TL  +L+  +       G+Q+H  +I+    LG + ++   S L++MY K
Sbjct: 128 KDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIK----LGFESYLLVGSPLLDMYSK 183

Query: 237 CGLVTKALQVFN-----------------LAGHRLEGEIN------KDVVLWTSMLGVYG 273
            G ++ A +VF                  LA   +E  +       KD V W++M+    
Sbjct: 184 VGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLA 243

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           +NG  KE I+ +  M + G K D+  F +V+ AC   G +  G +    ++    L+   
Sbjct: 244 QNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRT-NLQDHI 302

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
              S L+D+ C+   L  A  + + M  +     +V  W A++      G  + G+    
Sbjct: 303 YVGSALIDMYCKCKCLHYAKTVFDRMKQK-----NVVSWTAMV-----VGYGQTGRAGEA 352

Query: 394 KALELDPHNVGI 405
             + LD    GI
Sbjct: 353 VKIFLDMQRSGI 364



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 112/276 (40%), Gaps = 45/276 (16%)

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-- 248
           SA ++ C GL A+   + +H  +IR   +   + F+ ++++  Y        A +VF+  
Sbjct: 7   SAQIKQCIGLGASRHVKMIHGNIIRTLPH--PETFLHNNIVHAYALIRSSIYARRVFDGI 64

Query: 249 ----------------LAGHRLEGE------INKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
                            +GH  E E       ++D V W  ++  Y  +G     +K Y 
Sbjct: 65  PQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYN 124

Query: 287 AMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
            M+ +  +    V  +T++   S  G V LG +     +H   ++ G E Y    S L+D
Sbjct: 125 TMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQ-----IHGQVIKLGFESYLLVGSPLLD 179

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           +  + G +  A K+   + DR     +  M+  L+     CG  E   L   + +E D  
Sbjct: 180 MYSKVGCISDAKKVFYGLDDR-----NTVMYNTLMGGLLACGMIE-DALQLFRGMEKD-- 231

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           +V    M+  L       + I   RE MK +GLK D
Sbjct: 232 SVSWSAMIKGLAQNGMEKEAIECFRE-MKIEGLKMD 266


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/430 (33%), Positives = 240/430 (55%), Gaps = 17/430 (3%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78
           F + L+  Y+ C    +L +     + ++ R+ + +  +I+ + R G    A+K F  M 
Sbjct: 333 FCNTLLDMYSKC---GDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
             GI  D Y + + L      +    GK+V   + ++     +FV +AL+D+YAK   + 
Sbjct: 390 EEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMR 449

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSALLRAC 197
           +AEL+F E+ VK+ +  N ++ GY +       L L  L+        D  T++ +L AC
Sbjct: 450 EAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPAC 509

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A LSA + GR++H Y++R      +D  + +SL++MY KCG +  A  +F+         
Sbjct: 510 ASLSAFDKGREIHGYIMRN--GYFSDRHVANSLVDMYAKCGALLLARLLFDDI------- 560

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
            +KD+V WT M+  YG +G+ KE I L+  M   G +PDE++FV+++ ACSH+G V  G 
Sbjct: 561 TSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGW 620

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            +F  M H+ K+EP  EHY+C+VD+L R G L KA++ I  M          ++WGALL 
Sbjct: 621 RFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENM----PIPPDATIWGALLC 676

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
            C      +L +  A+K  EL+P N G YV+++N+YA+   W+E+ +LR+ + ++GL+K+
Sbjct: 677 GCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKN 736

Query: 438 VGCSWIEVTG 447
            GCSWIE+ G
Sbjct: 737 PGCSWIEIKG 746



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 163/341 (47%), Gaps = 17/341 (4%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S+L L YT C   K    + + +K       L +N+++++  ++G    ++  F  M   
Sbjct: 133 SKLALMYTNCGDLKEASRVFDQVKI---EKALFWNILMNELAKSGDFSGSIGLFKKMMSS 189

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G+ +D+Y       + +S++    G+Q+  ++ KSG+     VG++L+  Y K   +  A
Sbjct: 190 GVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSA 249

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +FDE+  ++ +  N++++GY    L   GL +   M   G++ D  T+ ++   CA  
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADS 309

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                GR VH + ++ C +   D F  ++L++MY KCG +  A  VF     R       
Sbjct: 310 RLISLGRAVHCFGVKACFSR-EDRFC-NTLLDMYSKCGDLDSAKVVFREMSGR------- 360

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
            VV +TSM+  Y R G   E +KL+E M   G  PD      V++ C+    +  G    
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVH 420

Query: 321 EWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEM 359
           EW+  +   + G + +  + L+D+  + G + +A  + +EM
Sbjct: 421 EWIKEN---DMGFDIFVSNALMDMYAKCGSMREAELVFSEM 458



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 182/395 (46%), Gaps = 26/395 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQ 107
           R+    N  +  FC +G+   A+K    +HV G + +D   LCS L      K  + GK+
Sbjct: 59  RSVTDANTQLRRFCESGNLKNAVK---LLHVSGKWDIDPRTLCSVLQLCADSKSLKDGKE 115

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V   +  +G++    +GS L  +Y     + +A  +FD++ ++ ++  N L++   ++  
Sbjct: 116 VDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGD 175

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           ++G + L + M + G++ D +T S + ++ + L +   G Q+H Y+++     G    + 
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKS--GFGERNSVG 233

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +SL+  Y K   V  A +VF+    R       DV+ W S++  Y  NG  ++ + ++  
Sbjct: 234 NSLVAFYLKNHRVDSARKVFDEMTER-------DVISWNSIINGYVSNGLAEKGLSVFVQ 286

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP--GPEHYSC--LVDLL 343
           ML +G + D    V+V + C+ +  + LG       VH + ++     E   C  L+D+ 
Sbjct: 287 MLFSGIEIDLATIVSVFAGCADSRLISLG-----RAVHCFGVKACFSREDRFCNTLLDMY 341

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            + G+LD A  +  EM     G S VS    +     +    E  KL  +   E    +V
Sbjct: 342 SKCGDLDSAKVVFREM----SGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDV 397

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
                + N  A+  + DE  ++ E +KE  +  D+
Sbjct: 398 YTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDI 432


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 148/403 (36%), Positives = 227/403 (56%), Gaps = 15/403 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R+ + + ++I+   +NG    AL  F  M + G  +D +   S LTA  S+     G
Sbjct: 230 LKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEG 289

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ A+V ++    +VFVGSAL+D+Y+K   I  AE +F  +P KN +   A+L GY + 
Sbjct: 290 KQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQN 349

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 +++   M   G++ D FTL +++ +CA L++ E G Q H   +     L + + 
Sbjct: 350 GFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRAL--VSGLISFIT 407

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKL 284
           + ++LI +YGKCG    +        HRL  E+N +D V WT++L  Y + G   E I L
Sbjct: 408 VSNALITLYGKCGSTENS--------HRLFTEMNIRDEVSWTALLAGYAQFGKANETIGL 459

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +E ML +G KPD V F+ V+SACS  G V+ G++YFE M+ ++ + P  +H +C++DLL 
Sbjct: 460 FERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLG 519

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG L++A   IN M         V  W  LLS+C   G  E+GK AA   + L+P N  
Sbjct: 520 RAGRLEEARNFINNM----PCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPA 575

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            YV+LS+LYA    WD++ QLR  M++K ++K+ G SWI+  G
Sbjct: 576 SYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKG 618



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 205/440 (46%), Gaps = 60/440 (13%)

Query: 36  LGTLTNCLKFLN--P-RNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALCS 91
           LG L+   +  N  P R+ + +N+ IS +   GS   A++ +  M     + L+     +
Sbjct: 84  LGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFST 143

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L   +  +    G+Q+   + K G+ S VFVGS L+D+Y KL LI+DA+  FDE+P +N
Sbjct: 144 MLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERN 203

Query: 152 SVCANALLSG-------------YCEAK-------------LWAGGLE-----LVRLMPA 180
            V  N +++G             +C  K             L   GLE     + R M  
Sbjct: 204 VVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRL 263

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G   D FT  ++L AC  L A   G+Q+HAY+IR   +  ++VF+ S+L++MY KC  +
Sbjct: 264 AGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRT--DHKDNVFVGSALVDMYSKCRSI 321

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A  VF     R+     K+V+ WT+ML  YG+NG+ +E +K++  M  NG +PD+   
Sbjct: 322 KSAETVFK----RMP---QKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTL 374

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLI 356
            +VIS+C++   ++ G ++     H   L  G   +    + L+ L  + G  + + +L 
Sbjct: 375 GSVISSCANLASLEEGAQF-----HCRALVSGLISFITVSNALITLYGKCGSTENSHRLF 429

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYVMLSNLYA 414
            EM  R   S     W ALL+     GK    +G      A  L P  V    +LS    
Sbjct: 430 TEMNIRDEVS-----WTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSR 484

Query: 415 KFCMWDEIGQLRELMKEKGL 434
              +   +     ++KE G+
Sbjct: 485 AGLVEKGLQYFESMIKEHGI 504



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 139/344 (40%), Gaps = 51/344 (14%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S L+  Y+ CR  K+  T+    K +  +N + +  ++  + +NG    A+K F  M  +
Sbjct: 309 SALVDMYSKCRSIKSAETV---FKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRN 365

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G+  D + L S +++  ++     G Q       SG +S + V +ALI LY K     ++
Sbjct: 366 GVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENS 425

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +F E+ +++ V   ALL+GY +       + L   M A GL  D  T   +L AC+  
Sbjct: 426 HRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACS-- 483

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                                              + GLV K LQ F       E  I  
Sbjct: 484 -----------------------------------RAGLVEKGLQYFE--SMIKEHGIMP 506

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
            V   T ++ + GR G  +E       M      PD V + T++S+C   G +++G    
Sbjct: 507 IVDHCTCIIDLLGRAGRLEEARNFINNM---PCHPDVVGWATLLSSCRVHGDMEIG---- 559

Query: 321 EWMVHD-YKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           +W       LEP  P  Y  L  L    G+ DK  +L   M D+
Sbjct: 560 KWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDK 603



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 129/332 (38%), Gaps = 72/332 (21%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            K++   + K+      F+ + LI  Y KL  +  A  +FD IP  N    N +LS Y +
Sbjct: 24  AKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSK 83

Query: 165 AKLWAGGLELVRLMP--------------------------------ALGLDYDHFTLSA 192
             L +   ++  LMP                                   ++ +  T S 
Sbjct: 84  LGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFST 143

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L  C+     + GRQ++  +++     G+DVF+ S L++MY K GL+  A + F+    
Sbjct: 144 MLILCSKFRCVDLGRQINGQILK--FGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPE 201

Query: 253 R-----------------LE-------GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           R                 +E       G   +D + WT M+    +NG  +E + ++  M
Sbjct: 202 RNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREM 261

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
            + G   D+  F +V++AC     +  G +     +H Y +    +      S LVD+  
Sbjct: 262 RLAGFAMDQFTFGSVLTACGSLLALGEGKQ-----IHAYVIRTDHKDNVFVGSALVDMYS 316

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +   +  A  +   M  +     +V  W A+L
Sbjct: 317 KCRSIKSAETVFKRMPQK-----NVISWTAML 343


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/400 (35%), Positives = 236/400 (59%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +N +I    +NG    AL     M   G     + + S L A  +       
Sbjct: 125 MPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC 184

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + + A   K+    +VFV +AL+D+YAK  L+ DA  +F+ +P ++ V  +++ +GY + 
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQN 244

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +++   L L R     GL +D F +S+++ ACAGL+A   G+Q++A + +      +++F
Sbjct: 245 EMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKS--GFCSNIF 302

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + SSLI+MY KCG + ++ +VF     R       +VVLW +M+    R+    EV+ L+
Sbjct: 303 VASSLIDMYAKCGGIEESYKVFRDVEKR-------NVVLWNAMISGLSRHARSLEVMILF 355

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M   G  P++V FV+V+SAC H G V+ G +YF+ M  ++ L P   HYSC+VD L R
Sbjct: 356 EKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSR 415

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG++ +A+ LI+++      ++S SMWG+LL++C   G  EL ++AA+K  +++PHN G 
Sbjct: 416 AGQIFEAYDLISKL----PFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGN 471

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y++LSN+YA    WDE+ ++R+L+KE  +KK+ G SWIE+
Sbjct: 472 YLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEI 511



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 135/273 (49%), Gaps = 15/273 (5%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK   A +   G  + +   + LI++Y+K   +  A  +FDE+P ++ V  N ++    +
Sbjct: 83  GKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQ 142

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L+L+  M   G  +  FT+S++L ACA   A    + +HA+ I+   +L  +V
Sbjct: 143 NGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDL--NV 200

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++L+++Y KCGL+  A+ VF       E   ++ VV W+SM   Y +N  +++ + L
Sbjct: 201 FVATALLDVYAKCGLMKDAVCVF-------ESMPDRSVVTWSSMAAGYVQNEMYEQALAL 253

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +      G K D+    +VI AC+    +  G +    ++            S L+D+  
Sbjct: 254 FRKAWETGLKHDQFLMSSVICACAGLAAMIEG-KQMNALLSKSGFCSNIFVASSLIDMYA 312

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + G +++++K+  ++  R     +V +W A++S
Sbjct: 313 KCGGIEESYKVFRDVEKR-----NVVLWNAMIS 340


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/431 (33%), Positives = 238/431 (55%), Gaps = 17/431 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           + F + L+  Y+ C    +L +     + ++ +  + +  +I+ + R G    A+K F  
Sbjct: 388 VRFNNTLLDMYSKC---GDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDE 444

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D YA+ S L A     + + GK V  ++ ++   ++ FV +AL D+YAK   
Sbjct: 445 MKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGS 504

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DA  +F  +  K+ +  N ++ GY +  L    L L   M       D  T++ +L A
Sbjct: 505 MKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPA 563

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA L+A + GR++H Y +R       D ++ +++++MY KCGL+  A  +F++       
Sbjct: 564 CASLAALDKGREIHGYALRN--GYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIP----- 616

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
             NKD+V WT M+  YG +GY  E I  +  M M G +PDEV+F++++ ACSH+G +  G
Sbjct: 617 --NKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEG 674

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            + F  M  + ++EP  EHY+C+VDLL R G L KA K I  M  +       ++WGALL
Sbjct: 675 WKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIK----PDATIWGALL 730

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
             C      +L +  A++  EL+P N G YV+L+N+YA+   W+E+ +LR+ + ++GLKK
Sbjct: 731 CGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKK 790

Query: 437 DVGCSWIEVTG 447
           + GCSWIE+ G
Sbjct: 791 NPGCSWIEIKG 801



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 155/310 (50%), Gaps = 17/310 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N++IS++  +G+   ++  F  M   GI  ++Y   S L    +V     G+QV   + 
Sbjct: 219 WNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLIC 278

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+ S   V ++LI  Y     +  A+ +FDE+  ++ +  N+++SGY +  L   G+E
Sbjct: 279 KLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIE 338

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M   G+D D  T+  +  ACA +     G+ +H+Y I K   L  +V   ++L++M
Sbjct: 339 IFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSI-KAATLDREVRFNNTLLDM 397

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A++VF     R++    K VV WTSM+  Y R G     IKL++ M   G 
Sbjct: 398 YSKCGDLNSAIRVF----ERMD---EKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGV 450

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLLCRAGEL 349
            PD  A  ++++AC+  G +K G      +VHDY  E   E  S     L D+  + G +
Sbjct: 451 VPDVYAVTSILNACAINGNLKSG-----KIVHDYIRENNLETNSFVSNALTDMYAKCGSM 505

Query: 350 DKAWKLINEM 359
             A  + + M
Sbjct: 506 KDAHDVFSHM 515



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 147/323 (45%), Gaps = 20/323 (6%)

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I +FC  G    A++           L  Y  CS L      K  R G++V++ +  SG 
Sbjct: 124 IVEFCEVGDLKNAMELLCSSQNSNFDLGAY--CSILQLCAERKSIRDGRRVRSIIESSGV 181

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           +    +G  L+ +Y K   + +  ++FD++        N ++S Y  +  +   + L + 
Sbjct: 182 MIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQ 241

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF--MQSSLIEMYG 235
           M  LG+  + +T S++L+  A ++  E GRQVH  +    C LG + +  + +SLI  Y 
Sbjct: 242 MLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLI----CKLGFNSYNTVVNSLISFYF 297

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
               V  A ++F+    R       DV+ W SM+  Y +NG     I+++  ML+ G   
Sbjct: 298 VGRKVRCAQKLFDELTDR-------DVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDI 350

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           D    V V  AC++ G + LG     + +    L+      + L+D+  + G+L+ A ++
Sbjct: 351 DLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRV 410

Query: 356 INEMLDRGHGSSSVSMWGALLSA 378
              M ++     +V  W ++++ 
Sbjct: 411 FERMDEK-----TVVSWTSMITG 428


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/399 (35%), Positives = 223/399 (55%), Gaps = 13/399 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +  +I+   +NG    A+  F  M   G+ +D Y   S LTA   ++  + G
Sbjct: 230 MKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEG 289

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   + +SG+  +VFVGSAL+D+Y K   +  AE +F  +  KN V   A+L GY + 
Sbjct: 290 KEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQN 349

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + +   M   G++ D FTL +++ +CA L++ E G Q H   +     L + + 
Sbjct: 350 GFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQAL--VSGLISFIT 407

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI +YGKCG +  + Q+F+    R       D V WT+++  Y + G   E I L+
Sbjct: 408 VSNALITLYGKCGSIEDSNQLFDEMSFR-------DEVSWTALVSGYAQFGKANETIDLF 460

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E ML+ G KPD V F+ V+SACS  G V+ G +YFE M+ D+ + P  +HY+C++DL  R
Sbjct: 461 ERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGR 520

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L++A   IN+M        S+  W  LLS+C   G  E+GK AA+  LELDP N   
Sbjct: 521 AGRLEEAKNFINKM---PFSPDSIG-WATLLSSCRLYGNEEIGKWAAESLLELDPQNPAG 576

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           Y++LS++YA    W  + QLR  M+EKG +K+ G SWI+
Sbjct: 577 YILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIK 615



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 190/386 (49%), Gaps = 55/386 (14%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSL 93
           +L T+      +  R+ + +N +IS +   GS + A+KT++ M   G+  L+     + L
Sbjct: 86  DLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTML 145

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
              +S      G+Q+   + K G+ + VFVGS+L+D+YAK+ L+  A  +FDE+  +N V
Sbjct: 146 LLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVV 205

Query: 154 CANALLSGYCEAKL------------------W-------------AGGLELVRLMPALG 182
             N +++G   + +                  W             A  ++L R M   G
Sbjct: 206 MYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEG 265

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D +T  ++L AC GL A + G+++H  +IR   N  ++VF+ S+L++MY KC  V  
Sbjct: 266 MAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYN--HNVFVGSALVDMYCKCRSVRY 323

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A  VF           NK+VV WT+ML  YG+NG+ +E ++++  M  NG +PD+    +
Sbjct: 324 AEAVFKRMA-------NKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGS 376

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINE 358
           VIS+C++   ++ G ++     H   L  G   +    + L+ L  + G ++ + +L +E
Sbjct: 377 VISSCANLASLEEGAQF-----HCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDE 431

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGK 384
           M  R   S     W AL+S     GK
Sbjct: 432 MSFRDEVS-----WTALVSGYAQFGK 452



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 133/332 (40%), Gaps = 72/332 (21%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            K++   + KS      F+ + LI+ Y+KL  I  A  +FD++P  NS   N +LS Y +
Sbjct: 24  AKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSK 83

Query: 165 AKLWAGGLELVRLMPALG--------------------------------LDYDHFTLSA 192
           +   +   E+  +MP                                   L+ +  T S 
Sbjct: 84  SGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFST 143

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L   +     + GRQ+H  +++     G  VF+ SSL++MY K GLV+ A QVF+    
Sbjct: 144 MLLLVSSQGCVDLGRQIHGQIVK--FGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQE 201

Query: 253 R------------------------LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           R                          G   +D + WT+M+    +NG   E + L+  M
Sbjct: 202 RNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDM 261

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
              G   D+  F +V++AC     +K G E     +H   +  G  H     S LVD+ C
Sbjct: 262 RQEGMAMDQYTFGSVLTACGGLRALKEGKE-----IHTLIIRSGYNHNVFVGSALVDMYC 316

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +   +  A  +   M ++     +V  W A+L
Sbjct: 317 KCRSVRYAEAVFKRMANK-----NVVSWTAML 343


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/425 (33%), Positives = 229/425 (53%), Gaps = 16/425 (3%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
            +L Y  C     L +       +  +    +N +I    +NG P  AL     M   G 
Sbjct: 391 FILAYAKC---GALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQ 447

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             D + + S L A   +K  ++GK++  +V ++G  +  FVG++L+  Y        A +
Sbjct: 448 QPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARV 507

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD +  KN V  NA++SGY +  L    L L R   + G+      + ++  AC+ LSA
Sbjct: 508 LFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSA 567

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G++ H Y+++       D F+  S+I+MY K G + ++ +VF       +G  +K+V
Sbjct: 568 LRLGKEAHGYVLKALQT--EDAFVGCSIIDMYAKSGCIKESRKVF-------DGLKDKNV 618

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
             W +++  +G +G+ KE I+LYE M   G  PD   ++ ++ AC H G V+ G++YF+ 
Sbjct: 619 ASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKE 678

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M +   +EP  EHY+CL+D+L RAG LD A +L+NEM +         +W +LL +C   
Sbjct: 679 MQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADN----RIWSSLLRSCRTF 734

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
           G  E+G+  A+K LEL+P     YV+LSNLYA    WD + ++R++MKE GL+KD GCSW
Sbjct: 735 GALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSW 794

Query: 443 IEVTG 447
           IEV G
Sbjct: 795 IEVGG 799



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 163/368 (44%), Gaps = 33/368 (8%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLN--PRNPLPFNVVISDFCRNGSPLYALKTFS 75
           +  +RL+  Y  C        L + L F N   +N + +N ++S + RNG     +K F 
Sbjct: 80  VLNTRLIKMYAMCG-----SPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFM 134

Query: 76  FMHVHGIFL-DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
            +     F  D +   S + A   + D R G+ +   V K G +  VFVG+AL+ +Y K 
Sbjct: 135 DLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKC 194

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE-LVRLMPALGLDYDHFTLSAL 193
             + +A  +FD +P  N V  N+++  + E        + L+ ++   GL  D  T+  +
Sbjct: 195 GAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTI 254

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L  CAG    + G  +H   ++    L  +V + ++++ MY KCG + +A   F      
Sbjct: 255 LPVCAGEGEVDIGMGIHGLAVK--LGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNN-- 310

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT--KPDEVAFVTVISACSHTG 311
                NK+VV W +M+  +   G   E   L + M + G   K +EV  + V+ AC    
Sbjct: 311 -----NKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKL 365

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHY---SCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
           Q++   E     +H Y      +H    +  +    + G L+ A K+ +     G G  +
Sbjct: 366 QLRSLKE-----LHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFH-----GIGDKT 415

Query: 369 VSMWGALL 376
           VS W AL+
Sbjct: 416 VSSWNALI 423



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 147/349 (42%), Gaps = 33/349 (9%)

Query: 45  FLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV----HGIFLDTYALCSSLTASTSVK 100
           F+   N + +N +I  F  NG   ++  +F  +       G+  D   + + L       
Sbjct: 206 FMPETNLVSWNSMICAFSENG---FSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEG 262

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           +   G  +     K G    V V +A++ +Y+K   +++A++ F +   KN V  N ++S
Sbjct: 263 EVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMIS 322

Query: 161 GYCEAKLWAGGLELVRLMPALG--LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
            +           L++ M   G  +  +  T+  +L AC         +++H Y  R C 
Sbjct: 323 AFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCF 382

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
                V + ++ I  Y KCG +  A +VF+  G       +K V  W +++G + +NG  
Sbjct: 383 Q---HVELSNAFILAYAKCGALNSAEKVFHGIG-------DKTVSSWNALIGGHAQNGDP 432

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-- 336
           ++ + L   M  +G +PD     +++ AC+H   ++ G E     +H Y L  G E    
Sbjct: 433 RKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKE-----IHGYVLRNGLETDFF 487

Query: 337 --SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
             + L+      G+   A  L + M D+     ++  W A++S     G
Sbjct: 488 VGTSLLSHYIHCGKASSARVLFDRMKDK-----NLVSWNAMISGYSQNG 531



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 95/192 (49%), Gaps = 15/192 (7%)

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           LL+AC      E GR++H + +    +  ND  + + LI+MY  CG    +  VF+    
Sbjct: 49  LLQACGNQKDIETGRRLHKF-VSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFD---- 103

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTG 311
            +E    K+++ W +++  Y RNG + +V+K++  ++ +   +PD   F +VI AC    
Sbjct: 104 NME---TKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGIL 160

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            V+LG E    MV    L       + LV +  + G +D+A K+ + M +     +++  
Sbjct: 161 DVRLG-EVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPE-----TNLVS 214

Query: 372 WGALLSACHDCG 383
           W +++ A  + G
Sbjct: 215 WNSMICAFSENG 226


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/398 (35%), Positives = 219/398 (55%), Gaps = 18/398 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS + +      AL+    M   G+  + Y   S L A   + D R    +
Sbjct: 77  RNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVRM---L 133

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G  S V+V SALID++AKL    DA  +FDE+   +++  N+++ G+ +    
Sbjct: 134 HCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 193

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL + M   G   +  TL+++LRAC GL+  E G Q H ++++       D+ + +
Sbjct: 194 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK----YDQDLILNN 249

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  A +VFN    R       DV+ W++M+    +NGY +E +KL+E M
Sbjct: 250 ALVDMYCKCGSLEDARRVFNQMKER-------DVITWSTMISGLAQNGYSQEALKLFELM 302

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +GTKP+ +  V V+ ACSH G ++ G  YF  M   Y + PG EHY C++DLL +AG+
Sbjct: 303 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGK 362

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD A KL+NEM            W  LL AC       L + AA+K + LDP + G Y +
Sbjct: 363 LDDAVKLLNEM----ECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTV 418

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           LSN+YA    WD + ++R+ M++ G+KK+ GCSWIEV 
Sbjct: 419 LSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVN 456



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 156/302 (51%), Gaps = 20/302 (6%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           +  HG++ D+      +    S +    G  +  H+  +G    +F+ + LI++Y K  L
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           ++DA  +FD++P +N +    ++S Y + K+    LEL+ LM   G+  + +T S++LRA
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C G+S     R +H  +I++   L +DV+++S+LI+++ K G    AL VF+        
Sbjct: 124 CNGMSDV---RMLHCGIIKE--GLESDVYVRSALIDVFAKLGEPEDALSVFDEM------ 172

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            +  D ++W S++G + +N      ++L++ M   G   ++    +V+ AC+    ++LG
Sbjct: 173 -VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 231

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           ++     VH  K +      + LVD+ C+ G L+ A ++ N+M +R      V  W  ++
Sbjct: 232 MQAH---VHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKER-----DVITWSTMI 283

Query: 377 SA 378
           S 
Sbjct: 284 SG 285


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/396 (35%), Positives = 228/396 (57%), Gaps = 13/396 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           +P++ +IS + ++     A++ F  M    +  + +   S L +  S+++ + GKQV  H
Sbjct: 209 IPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCH 268

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V K G   +VFV +AL+D+YAK   + ++  +F E+P +N V  N ++ GY ++      
Sbjct: 269 VLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKA 328

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L L + M    +     T S++LRACA L+A E G Q+H+  ++   +   DV + ++LI
Sbjct: 329 LSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYD--KDVVVGNALI 386

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KCG +  A  VF++   R       D + W +M+  Y  +G   E +K ++ M   
Sbjct: 387 DMYAKCGSIKNARLVFDMLSER-------DEISWNAMISGYSMHGLVGEALKAFQMMQET 439

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
              P+++ FV+++SACS+ G + +G  YF+ MV DY +EP  EHY+C+V LL R+G LDK
Sbjct: 440 ECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDK 499

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
           A KLI E+        +V +W ALL AC      +LG ++AQ+ L++DP +   +V+LSN
Sbjct: 500 AVKLIEEI----PLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSN 555

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +YA+   W+ +  +R+ MK KG+KK+ G SWIE  G
Sbjct: 556 IYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQG 591



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 163/337 (48%), Gaps = 18/337 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + F  +I  + ++      +  FS +H  G  L+ +   + L    SV+ A     +
Sbjct: 4   RNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSL 63

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + K G  S+ FVG+ALID YA    ++ A   FD I  K+ V    +++ Y E   +
Sbjct: 64  HACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRF 123

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M  +G + +HFT + +L+AC GL A   G+ VH  +++ C  +  D+++  
Sbjct: 124 QDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEM--DLYVGV 181

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            L+++Y K G     L+VF       E     DV+ W+ M+  Y ++   +E ++L+  M
Sbjct: 182 GLLDLYTKFGDANDVLRVF-------EEMPKHDVIPWSFMISRYAQSNQSREAVELFGQM 234

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLC 344
                 P++  F +V+ +C+    ++LG +     VH + L+ G +      + L+D+  
Sbjct: 235 RRAFVLPNQFTFASVLQSCASIENLQLGKQ-----VHCHVLKVGLDGNVFVSNALMDVYA 289

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
           + G LD + KL  E+ +R   + +  + G + S   D
Sbjct: 290 KCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGD 326


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 138/399 (34%), Positives = 226/399 (56%), Gaps = 13/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++S F  N +    L+ F+ M   G   + Y   S L + +S+ D   GKQV
Sbjct: 495 RDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV 554

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + K+    + FVG+AL+D+YAK   + DAE +F+ +  ++      +++GY +    
Sbjct: 555 HAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQG 614

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              ++    M   G+  + FTL++ L  C+ ++  + GRQ+H+  I+       D+F+ S
Sbjct: 615 EKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIK--AGQSGDMFVAS 672

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG V  A  VF       +G +++D V W +++  Y ++G   + +K +EAM
Sbjct: 673 ALVDMYAKCGCVEDAEVVF-------DGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAM 725

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  GT PDEV F+ V+SACSH G ++ G ++F  +   Y + P  EHY+C+VD+L RAG+
Sbjct: 726 LDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGK 785

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +    I EM      +S+V +W  +L AC   G  E G+ AA K  EL+P     Y++
Sbjct: 786 FHEVESFIEEM----KLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYIL 841

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSN++A   MWD++  +R LM  +G+KK+ GCSW+EV G
Sbjct: 842 LSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNG 880



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 163/333 (48%), Gaps = 15/333 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I+ F   G    A+  F  M   G+  + +   ++L A +   D  FGKQV
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K G  S +FVGSAL+DLYAK   +  AE +F  +P +N+V  NALL+G+ +    
Sbjct: 252 HAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDA 311

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M    +++  FTLS +L+ CA       G+ VH+  IR  C L  D F+  
Sbjct: 312 EKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCEL--DEFISC 369

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            L++MY KCGL   AL+VF     R+E   + DVV W++++    + G  +E  ++++ M
Sbjct: 370 CLVDMYSKCGLAGDALKVF----VRIE---DPDVVSWSAIITCLDQKGQSREAAEVFKRM 422

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G  P++    +++SA +  G +  G E     V  Y  E      + LV +  + G 
Sbjct: 423 RHSGVIPNQFTLASLVSAATDLGDLYYG-ESIHACVCKYGFEYDNTVCNALVTMYMKIGS 481

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
           +    ++     +R      +  W ALLS  HD
Sbjct: 482 VQDGCRVFEATTNR-----DLISWNALLSGFHD 509



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 178/382 (46%), Gaps = 52/382 (13%)

Query: 45  FLNPRNP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           F+   +P  + ++ +I+   + G    A + F  M   G+  + + L S ++A+T + D 
Sbjct: 388 FVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDL 447

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
            +G+ + A V K G+     V +AL+ +Y K+  + D   +F+    ++ +  NALLSG+
Sbjct: 448 YYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGF 507

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            + +    GL +   M A G + + +T  ++LR+C+ LS  + G+QVHA +++   + GN
Sbjct: 508 HDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLD-GN 566

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D F+ ++L++MY K   +  A  +FN    RL   I +D+  WT ++  Y ++G  ++ +
Sbjct: 567 D-FVGTALVDMYAKNRFLEDAETIFN----RL---IKRDLFAWTVIVAGYAQDGQGEKAV 618

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSC 338
           K +  M   G KP+E    + +S CS    +  G +     +H   ++ G        S 
Sbjct: 619 KCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-----LHSMAIKAGQSGDMFVASA 673

Query: 339 LVDLLCRAGELD-------------------------------KAWKLINEMLDRGHGSS 367
           LVD+  + G ++                               KA K    MLD G    
Sbjct: 674 LVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPD 733

Query: 368 SVSMWGALLSACHDCGKFELGK 389
            V+  G +LSAC   G  E GK
Sbjct: 734 EVTFIG-VLSACSHMGLIEEGK 754



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 141/298 (47%), Gaps = 27/298 (9%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L    S  D   GK +   V KSG      + ++L+++YAK    + A  +F EIP ++ 
Sbjct: 135 LRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDV 194

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V   AL++G+      +G + L   M   G++ + FT +  L+AC+     EFG+QVHA 
Sbjct: 195 VSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAE 254

Query: 213 MIRKCCNLGN--DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            I+    +G+  D+F+ S+L+++Y KCG +  A +VF            ++ V W ++L 
Sbjct: 255 AIK----VGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-------KQNAVSWNALLN 303

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            + + G  ++V+ L+  M  +     +    TV+  C+++G ++ G      +VH   + 
Sbjct: 304 GFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-----QIVHSLAIR 358

Query: 331 PGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            G E       CLVD+  + G    A K+   + D       V  W A+++     G+
Sbjct: 359 IGCELDEFISCCLVDMYSKCGLAGDALKVFVRIED-----PDVVSWSAIITCLDQKGQ 411



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 29/214 (13%)

Query: 182 GLDYDH----FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           GLD+D        S +LR CA       G+ +H  +I+   N   D  + +SL+ +Y KC
Sbjct: 119 GLDFDSKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGIN--PDSHLWNSLVNVYAKC 176

Query: 238 GLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           G    A +VF        GEI  +DVV WT+++  +   GY    + L+  M   G + +
Sbjct: 177 GSANYACKVF--------GEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEAN 228

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKA 352
           E  + T + ACS    ++ G +     VH   ++ G        S LVDL  + GE+  A
Sbjct: 229 EFTYATALKACSMCLDLEFGKQ-----VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLA 283

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            ++   M  +   S     W ALL+     G  E
Sbjct: 284 ERVFLCMPKQNAVS-----WNALLNGFAQMGDAE 312


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 219/398 (55%), Gaps = 18/398 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS + +      AL+    M    +  + Y   S L +   + D R    +
Sbjct: 125 RNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---L 181

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G  S VFV SALID++AKL    DA  +FDE+   +++  N+++ G+ +    
Sbjct: 182 HCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 241

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL + M   G   +  TL+++LRAC GL+  E G Q H ++++       D+ + +
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK----YDQDLILNN 297

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  AL+VFN    R       DV+ W++M+    +NGY +E +KL+E M
Sbjct: 298 ALVDMYCKCGSLEDALRVFNQMKER-------DVITWSTMISGLAQNGYSQEALKLFERM 350

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +GTKP+ +  V V+ ACSH G ++ G  YF  M   Y ++P  EHY C++DLL +AG+
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD A KL+NEM            W  LL AC       L + AA+K + LDP + G Y +
Sbjct: 411 LDDAVKLLNEM----ECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTL 466

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           LSN+YA    WD + ++R  M+++G+KK+ GCSWIEV 
Sbjct: 467 LSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVN 504



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 166/329 (50%), Gaps = 27/329 (8%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           A+K    +  HG++ D+      +    S +    G  +  H+  +G    +F+ + LI+
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y K  L++DA  +FD++P +N +    ++S Y + K+    LEL+ LM    +  + +T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
            S++LR+C G+S     R +H  +I++   L +DVF++S+LI+++ K G    AL VF  
Sbjct: 165 YSSVLRSCNGMSDV---RMLHCGIIKE--GLESDVFVRSALIDVFAKLGEPEDALSVF-- 217

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                +  +  D ++W S++G + +N      ++L++ M   G   ++    +V+ AC+ 
Sbjct: 218 -----DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTG 272

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
              ++LG++     VH  K +      + LVD+ C+ G L+ A ++ N+M +R      V
Sbjct: 273 LALLELGMQAH---VHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKER-----DV 324

Query: 370 SMWGALLSACHDCGKFELGKLAAQKALEL 398
             W  ++S     G        +Q+AL+L
Sbjct: 325 ITWSTMISGLAQNG-------YSQEALKL 346


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 219/398 (55%), Gaps = 18/398 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS + +      AL+    M    +  + Y   S L +   + D R    +
Sbjct: 125 RNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---L 181

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G  S VFV SALID++AKL    DA  +FDE+   +++  N+++ G+ +    
Sbjct: 182 HCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 241

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL + M   G   +  TL+++LRAC GL+  E G Q H ++++       D+ + +
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK----YDQDLILNN 297

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  AL+VFN    R       DV+ W++M+    +NGY +E +KL+E M
Sbjct: 298 ALVDMYCKCGSLEDALRVFNQMKER-------DVITWSTMISGLAQNGYSQEALKLFERM 350

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +GTKP+ +  V V+ ACSH G ++ G  YF  M   Y ++P  EHY C++DLL +AG+
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD A KL+NEM            W  LL AC       L + AA+K + LDP + G Y +
Sbjct: 411 LDDAVKLLNEM----ECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTL 466

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           LSN+YA    WD + ++R  M+++G+KK+ GCSWIEV 
Sbjct: 467 LSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVN 504



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 166/329 (50%), Gaps = 27/329 (8%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           A+K    +  HG++ D+      +    S +    G  +  H+  +G    +F+ + LI+
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y K  L++DA  +FD++P +N +    ++S Y + K+    LEL+ LM    +  + +T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
            S++LR+C G+S     R +H  +I++   L +DVF++S+LI+++ K G    AL VF  
Sbjct: 165 YSSVLRSCNGMSDV---RMLHCGIIKE--GLESDVFVRSALIDVFAKLGEPEDALSVF-- 217

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                +  +  D ++W S++G + +N      ++L++ M   G   ++    +V+ AC+ 
Sbjct: 218 -----DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTG 272

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
              ++LG++     VH  K +      + LVD+ C+ G L+ A ++ N+M +R      V
Sbjct: 273 LALLELGMQAH---VHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKER-----DV 324

Query: 370 SMWGALLSACHDCGKFELGKLAAQKALEL 398
             W  ++S     G        +Q+AL+L
Sbjct: 325 ITWSTMISGLAQNG-------YSQEALKL 346


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/394 (34%), Positives = 228/394 (57%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I    +NG P  +L  F  M   G+  D + + S L A   +K  R GK++   + 
Sbjct: 470 WNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFML 529

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           ++G     F+G +L+ LY +   +   +L+FD++  K+ VC N +++G+ + +L    L+
Sbjct: 530 RNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALD 589

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
             R M + G+      ++ +L AC+ +SA   G++VH++ ++   +L  D F+  +LI+M
Sbjct: 590 TFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALK--AHLSEDAFVTCALIDM 647

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG + ++  +F+           KD  +W  ++  YG +G+  + I+L+E M   G 
Sbjct: 648 YAKCGCMEQSQNIFDRVNE-------KDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGG 700

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +PD   F+ V+ AC+H G V  G++Y   M + Y ++P  EHY+C+VD+L RAG+L +A 
Sbjct: 701 RPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEAL 760

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           KL+NEM D         +W +LLS+C + G  E+G+  ++K LEL+P+    YV+LSNLY
Sbjct: 761 KLVNEMPDE----PDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLY 816

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A    WDE+ ++R+ MKE GL KD GCSWIE+ G
Sbjct: 817 AGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGG 850



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 147/296 (49%), Gaps = 28/296 (9%)

Query: 100 KDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           K+   G++V A V+ S  L + V + + +I +Y+      D+  +FD    K+    NAL
Sbjct: 106 KNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNAL 165

Query: 159 LSGYCEAKLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           LSGY    L+   + L + L+ A  L  D+FTL  + +ACAG++  E G  VHA  ++  
Sbjct: 166 LSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALK-- 223

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
               +D F+ ++LI MYGKCG V  A++VF       E   N+++V W S++     NG 
Sbjct: 224 AGGFSDAFVGNALIAMYGKCGFVESAVKVF-------ETMRNRNLVSWNSVMYACSENGG 276

Query: 278 FKEVIKLYEAMLMN---GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           F E   +++ +L++   G  PD    VTVI AC+  G+V++G+     +VH    + G  
Sbjct: 277 FGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGM-----VVHGLAFKLGIT 331

Query: 335 H----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
                 + LVD+  + G L +A  L +      +G  +V  W  ++      G F 
Sbjct: 332 EEVTVNNSLVDMYSKCGYLGEARALFDM-----NGGKNVVSWNTIIWGYSKEGDFR 382



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 167/380 (43%), Gaps = 30/380 (7%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VH   F+ G+     +   + L+  Y+ C +   LG           +N + +N +I  +
Sbjct: 321 VHGLAFKLGITE--EVTVNNSLVDMYSKCGY---LGEARALFDMNGGKNVVSWNTIIWGY 375

Query: 62  CRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
            + G      +    M     + ++   + + L A +        K++  +  + G+L  
Sbjct: 376 SKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKD 435

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
             V +A +  YAK   +  AE +F  +  K     NAL+  + +       L+L  +M  
Sbjct: 436 ELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMD 495

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+D D FT+ +LL ACA L     G+++H +M+R    L  D F+  SL+ +Y +C  +
Sbjct: 496 SGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLEL--DEFIGISLMSLYIQCSSM 553

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
                +F+    ++E   NK +V W  M+  + +N    E +  +  ML  G KP E+A 
Sbjct: 554 LLGKLIFD----KME---NKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAV 606

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS-------CLVDLLCRAGELDKAW 353
             V+ ACS    ++LG E     VH + L+    H S        L+D+  + G ++++ 
Sbjct: 607 TGVLGACSQVSALRLGKE-----VHSFALKA---HLSEDAFVTCALIDMYAKCGCMEQSQ 658

Query: 354 KLINEMLDRGHGSSSVSMWG 373
            + + + ++     +V + G
Sbjct: 659 NIFDRVNEKDEAVWNVIIAG 678



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 138/302 (45%), Gaps = 17/302 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-S 75
           ++  +R++  Y+ C    +   + +  K    ++   +N ++S + RN     A+  F  
Sbjct: 128 VVLSTRIIAMYSACGSPSDSRGVFDAAK---EKDLFLYNALLSGYSRNALFRDAISLFLE 184

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            +    +  D + L     A   V D   G+ V A   K+G  S  FVG+ALI +Y K  
Sbjct: 185 LLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCG 244

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA---GGLELVRLMPALGLDYDHFTLSA 192
            +  A  +F+ +  +N V  N+++    E   +    G  + + +    GL  D  T+  
Sbjct: 245 FVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVT 304

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           ++ ACA +     G  VH    +    +  +V + +SL++MY KCG + +A  +F++ G 
Sbjct: 305 VIPACAAVGEVRMGMVVHGLAFK--LGITEEVTVNNSLVDMYSKCGYLGEARALFDMNG- 361

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKPDEVAFVTVISACSHTG 311
                  K+VV W +++  Y + G F+ V +L + M      + +EV  + V+ ACS   
Sbjct: 362 ------GKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEH 415

Query: 312 QV 313
           Q+
Sbjct: 416 QL 417



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 129/293 (44%), Gaps = 18/293 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTYALCSSLTASTSVKDA 102
           +  RN + +N V+     NG        F  + +    G+  D   + + + A  +V + 
Sbjct: 256 MRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEV 315

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G  V     K G    V V ++L+D+Y+K   + +A  +FD    KN V  N ++ GY
Sbjct: 316 RMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGY 375

Query: 163 CEAKLWAGGLELVRLMP-ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
            +   + G  EL++ M     +  +  T+  +L AC+G       +++H Y  R      
Sbjct: 376 SKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRH--GFL 433

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            D  + ++ +  Y KC  +  A +VF        G   K V  W +++G + +NG+  + 
Sbjct: 434 KDELVANAFVAAYAKCSSLDCAERVFC-------GMEGKTVSSWNALIGAHAQNGFPGKS 486

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           + L+  M+ +G  PD     +++ AC+    ++ G E     +H + L  G E
Sbjct: 487 LDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKE-----IHGFMLRNGLE 534



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 23/207 (11%)

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
           D     +  LLRAC        GR+VHA ++     L NDV + + +I MY  CG  + +
Sbjct: 89  DISKEAIGILLRACGHHKNIHVGRKVHA-LVSASHKLRNDVVLSTRIIAMYSACGSPSDS 147

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY-EAMLMNGTKPDEVAFVT 302
             VF+ A         KD+ L+ ++L  Y RN  F++ I L+ E +      PD      
Sbjct: 148 RGVFDAAKE-------KDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPC 200

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY--SCLVDLLCRAGELDKAWKLINE 358
           V  AC+    V+LG       VH   L+ G   + +  + L+ +  + G ++ A K+   
Sbjct: 201 VAKACAGVADVELG-----EAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFET 255

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKF 385
           M +R     ++  W +++ AC + G F
Sbjct: 256 MRNR-----NLVSWNSVMYACSENGGF 277


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 137/410 (33%), Positives = 234/410 (57%), Gaps = 13/410 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           LG+L    + +  R+ + +N VIS   +NG    AL     M    +  D++ L S L  
Sbjct: 186 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 245

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
                +   GK++  +  ++G+ + VF+GS+LID+YAK   + D+  +F  +P  + +  
Sbjct: 246 FAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 305

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           N++++G  +  ++  GL+  + M    +  +H + S+++ ACA L+    G+Q+H Y+IR
Sbjct: 306 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 365

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
                  +VF+ S+L++MY KCG +  A  +F+    ++E     D+V WT+M+  Y  +
Sbjct: 366 S--RFDGNVFIASALVDMYAKCGNIRTARWIFD----KMEL---YDMVSWTAMIMGYALH 416

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G+  + I L++ M + G KP+ VAF+ V++ACSH G V    +YF  M  DY++ PG EH
Sbjct: 417 GHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH 476

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
           Y+ + DLL R G L++A++ I++M    H   + S+W  LL+AC      EL +  ++K 
Sbjct: 477 YAAVADLLGRVGRLEEAYEFISDM----HIEPTGSVWSTLLAACRVHKNIELAEKVSKKL 532

Query: 396 LELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             +DP N+G YV+LSN+Y+    W +  +LR  M++KG+KK   CSWIE+
Sbjct: 533 FTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEI 582



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 162/358 (45%), Gaps = 43/358 (12%)

Query: 35  NLGTLTNCLKFLN----PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALC 90
           NL  L + L   N    P   L +  +I  +  +G  L++L  F  M   G + D     
Sbjct: 51  NLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFP 110

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL---MFDE- 146
           S L + T +KD RFG+ V   + + G    ++  +AL+++Y+K   + +      +FDE 
Sbjct: 111 SVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEG 170

Query: 147 -------------------------IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
                                    +P ++ V  N ++SG  +  +    L +VR M   
Sbjct: 171 KTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNA 230

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            L  D FTLS++L   A       G+++H Y IR       DVF+ SSLI+MY KC  V 
Sbjct: 231 DLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRN--GYDADVFIGSSLIDMYAKCTRVD 288

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            + +VF +           D + W S++    +NG F E +K ++ ML+   KP+ V+F 
Sbjct: 289 DSCRVFYMLPQH-------DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFS 341

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           +++ AC+H   + LG +   +++   + +      S LVD+  + G +  A  + ++M
Sbjct: 342 SIMPACAHLTTLHLGKQLHGYIIRS-RFDGNVFIASALVDMYAKCGNIRTARWIFDKM 398



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 154/349 (44%), Gaps = 43/349 (12%)

Query: 86  TYALCSSLTAS-TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           T  LC +L  + +SVK     KQ+ A + ++  L S  + S ++ +Y+ L L+HD+ L+F
Sbjct: 4   TQNLCKTLLQNPSSVKSKSQAKQLHAQILRTS-LPSPSLLSTILSIYSNLNLLHDSLLIF 62

Query: 145 DEIPVKNSVCA-NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           + +P   +  A  +++  Y    L+   L     M A G   DH    ++L++C  +   
Sbjct: 63  NSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDL 122

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY------------------GKCGLV--TKA 243
            FG  VH  +IR    +G D++  ++L+ MY                  GK   V   K 
Sbjct: 123 RFGESVHGCIIR--LGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180

Query: 244 LQVFNLAGHRLEGEI--NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            + + L   R   E+   +D+V W +++    +NG  ++ + +   M     +PD     
Sbjct: 181 KESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 240

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLIN 357
           +V+   +    +  G E     +H Y +  G +      S L+D+  +   +D + ++  
Sbjct: 241 SVLPIFAEYVNLLKGKE-----IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF- 294

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL--ELDPHNVG 404
            ML +  G S    W ++++ C   G F+ G    Q+ L  ++ P++V 
Sbjct: 295 YMLPQHDGIS----WNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVS 339


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 241/431 (55%), Gaps = 19/431 (4%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78
           F + L+  Y+ C    +L +     + ++ R+ + +  +I+ + R G    A+K F  M 
Sbjct: 333 FCNTLLDMYSKC---GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
             GI  D Y + + L      +    GK+V   + ++     +FV +AL+D+YAK   + 
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 449

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSALLRAC 197
           +AEL+F E+ VK+ +  N ++ GY +       L L  L+        D  T++ +L AC
Sbjct: 450 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 509

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A LSA + GR++H Y++R      +D  + +SL++MY KCG +        L  H L  +
Sbjct: 510 ASLSAFDKGREIHGYIMRN--GYFSDRHVANSLVDMYAKCGAL--------LLAHMLFDD 559

Query: 258 I-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           I +KD+V WT M+  YG +G+ KE I L+  M   G + DE++FV+++ ACSH+G V  G
Sbjct: 560 IASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 619

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             +F  M H+ K+EP  EHY+C+VD+L R G+L KA++ I  M          ++WGALL
Sbjct: 620 WRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENM----PIPPDATIWGALL 675

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
             C      +L +  A+K  EL+P N G YV+++N+YA+   W+++ +LR+ + ++GL+K
Sbjct: 676 CGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRK 735

Query: 437 DVGCSWIEVTG 447
           + GCSWIE+ G
Sbjct: 736 NPGCSWIEIKG 746



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 162/341 (47%), Gaps = 17/341 (4%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S+L L YT C   K    + + +K       L +N+++++  ++G    ++  F  M   
Sbjct: 133 SKLSLMYTNCGDLKEASRVFDEVKI---EKALFWNILMNELAKSGDFSGSIGLFKKMMSS 189

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G+ +D+Y       + +S++    G+Q+   + KSG+     VG++L+  Y K   +  A
Sbjct: 190 GVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSA 249

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +FDE+  ++ +  N++++GY    L   GL +   M   G++ D  T+ ++   CA  
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS 309

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                GR VH+  ++ C +   D F  ++L++MY KCG +  A  VF     R       
Sbjct: 310 RLISLGRAVHSIGVKACFSR-EDRFC-NTLLDMYSKCGDLDSAKAVFREMSDR------- 360

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
            VV +TSM+  Y R G   E +KL+E M   G  PD      V++ C+    +  G    
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 420

Query: 321 EWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEM 359
           EW+  +   + G + +  + L+D+  + G + +A  + +EM
Sbjct: 421 EWIKEN---DLGFDIFVSNALMDMYAKCGSMQEAELVFSEM 458



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 194/414 (46%), Gaps = 28/414 (6%)

Query: 32  HKKNLGTLTNCLKFLNP--RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYA 88
           ++ +L T+++C+  +    R+    N  +  FC +G+   A+K    + V G + +D   
Sbjct: 40  NRASLRTVSDCVDSITTFDRSVTDANTQLRRFCESGNLENAVK---LLCVSGKWDIDPRT 96

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           LCS L      K  + GK+V   +  +G++    +GS L  +Y     + +A  +FDE+ 
Sbjct: 97  LCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVK 156

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
           ++ ++  N L++   ++  ++G + L + M + G++ D +T S + ++ + L +   G Q
Sbjct: 157 IEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQ 216

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +H ++++     G    + +SL+  Y K   V  A +VF+    R       DV+ W S+
Sbjct: 217 LHGFILKS--GFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER-------DVISWNSI 267

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y  NG  ++ + ++  ML++G + D    V+V + C+ +  + LG       VH   
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-----RAVHSIG 322

Query: 329 LEP--GPEHYSC--LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           ++     E   C  L+D+  + G+LD A  +  EM DR    S VS    +     +   
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR----SVVSYTSMIAGYAREGLA 378

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
            E  KL  +   E    +V     + N  A++ + DE  ++ E +KE  L  D+
Sbjct: 379 GEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDI 432


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 146/430 (33%), Positives = 241/430 (56%), Gaps = 16/430 (3%)

Query: 16  LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFS 75
            I   + LM  Y TC    +   +    + ++ +N + +  +I+ +         L+ F 
Sbjct: 143 FIYVDNALMDMYATCCVSMDDACMV--FRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFR 200

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            M +  + L+ ++   ++ A TS+    FG+Q+ A VTK G+ S++ V ++++D+Y +  
Sbjct: 201 QMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCS 260

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
              +A   F E+  ++ +  N L++GY E       L +  +M + G   + FT ++++ 
Sbjct: 261 CFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMA 319

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           ACA L+    G+Q+H  +IR+   L  ++ + ++LI+MY KCG +  + QVF        
Sbjct: 320 ACATLAFLNCGQQIHGRIIRR--GLDGNLALSNALIDMYSKCGNIADSHQVFG------- 370

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
           G   +D+V WT+M+  YG +GY +E ++L++ M+ +G +PD V F+ ++SACSH G V  
Sbjct: 371 GMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDE 430

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G+ YF+ MV DY + P  E Y C+VDLL RAG++++A++LI  M  +        +WG  
Sbjct: 431 GLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFK----PDECVWGPF 486

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L AC       LGKLAA + L+L PH  G YVMLSN+YA    W E  +LR+LMK  G K
Sbjct: 487 LGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNK 546

Query: 436 KDVGCSWIEV 445
           K+ G SW+EV
Sbjct: 547 KETGRSWVEV 556



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 152/326 (46%), Gaps = 12/326 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + + V+I+ +    +  +A   F  M    +  + + + S L A   +K   +G+ V
Sbjct: 72  RDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLV 131

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
                K G    ++V +AL+D+YA   + + DA ++F  I +KN V    L++GY     
Sbjct: 132 HGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDD 191

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
             GGL + R M    ++ + F+ S  +RAC  + +  FG Q+HA + +      +++ + 
Sbjct: 192 GYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKH--GFESNLPVM 249

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +S+++MY +C   ++A + F     R       D++ W +++  Y R+    E + ++  
Sbjct: 250 NSILDMYCRCSCFSEANRYFYEMNQR-------DLITWNTLIAGYERSNP-TESLYVFSM 301

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G  P+   F ++++AC+    +  G +    ++    L+      + L+D+  + G
Sbjct: 302 MESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRR-GLDGNLALSNALIDMYSKCG 360

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWG 373
            +  + ++   M  R   S +  M G
Sbjct: 361 NIADSHQVFGGMSRRDLVSWTAMMIG 386



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 11/241 (4%)

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           + + LI  Y    LI +A  +FDE+P ++ V    +++GY           +   M    
Sbjct: 45  LATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEE 104

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL-VT 241
           LD + FT+S++L+AC G+    +GR VH   I+    L   +++ ++L++MY  C + + 
Sbjct: 105 LDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKH--GLDGFIYVDNALMDMYATCCVSMD 162

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A  VF   G  L+ E++     WT+++  Y         ++++  ML+   + +  +F 
Sbjct: 163 DACMVFR--GIHLKNEVS-----WTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFS 215

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
             + AC+  G    G E     V  +  E      + ++D+ CR     +A +   EM  
Sbjct: 216 IAVRACTSIGSHTFG-EQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQ 274

Query: 362 R 362
           R
Sbjct: 275 R 275


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 144/430 (33%), Positives = 240/430 (55%), Gaps = 17/430 (3%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78
           F + L+  Y+ C    +L +     + ++ R+ + +  +I+ + R G    A+K F  M 
Sbjct: 182 FCNTLLDMYSKC---GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 238

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
             GI  D Y + + L      +    GK+V   + ++     +FV +AL+D+YAK   + 
Sbjct: 239 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 298

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSALLRAC 197
           +AEL+F E+ VK+ +  N ++ GY +       L L  L+        D  T++ +L AC
Sbjct: 299 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 358

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A LSA + GR++H Y++R      +D  + +SL++MY KCG +  A  +F+         
Sbjct: 359 ASLSAFDKGREIHGYIMRN--GYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA------ 410

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
            +KD+V WT M+  YG +G+ KE I L+  M   G + DE++FV+++ ACSH+G V  G 
Sbjct: 411 -SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 469

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            +F  M H+ K+EP  EHY+C+VD+L R G+L KA++ I  M          ++WGALL 
Sbjct: 470 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENM----PIPPDATIWGALLC 525

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
            C      +L +  A+K  EL+P N G YV+++N+YA+   W+++ +LR+ + ++GL+K+
Sbjct: 526 GCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKN 585

Query: 438 VGCSWIEVTG 447
            GCSWIE+ G
Sbjct: 586 PGCSWIEIKG 595



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 150/311 (48%), Gaps = 14/311 (4%)

Query: 51  PLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110
            L +N+++++  ++G    ++  F  M   G+ +D+Y       + +S++    G+Q+  
Sbjct: 9   ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHG 68

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            + KSG+     VG++L+  Y K   +  A  +FDE+  ++ +  N++++GY    L   
Sbjct: 69  FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 128

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
           GL +   M   G++ D  T+ ++   CA       GR VH+  ++ C +   D F  ++L
Sbjct: 129 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSR-EDRFC-NTL 186

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           ++MY KCG +  A  VF     R        VV +TSM+  Y R G   E +KL+E M  
Sbjct: 187 LDMYSKCGDLDSAKAVFREMSDR-------SVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGE 348
            G  PD      V++ C+    +  G    EW+  +   + G + +  + L+D+  + G 
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN---DLGFDIFVSNALMDMYAKCGS 296

Query: 349 LDKAWKLINEM 359
           + +A  + +EM
Sbjct: 297 MQEAELVFSEM 307



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 140/299 (46%), Gaps = 22/299 (7%)

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           FDE+ ++ ++  N L++   ++  ++G + L + M + G++ D +T S + ++ + L + 
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
             G Q+H ++++     G    + +SL+  Y K   V  A +VF+    R       DV+
Sbjct: 61  HGGEQLHGFILKS--GFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER-------DVI 111

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W S++  Y  NG  ++ + ++  ML++G + D    V+V + C+ +  + LG       
Sbjct: 112 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-----RA 166

Query: 324 VHDYKLEP--GPEHYSC--LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           VH   ++     E   C  L+D+  + G+LD A  +  EM DR    S VS    +    
Sbjct: 167 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR----SVVSYTSMIAGYA 222

Query: 380 HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
            +    E  KL  +   E    +V     + N  A++ + DE  ++ E +KE  L  D+
Sbjct: 223 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDI 281


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 146/430 (33%), Positives = 241/430 (56%), Gaps = 16/430 (3%)

Query: 16  LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFS 75
            I   + LM  Y TC    +   +    + ++ +N + +  +I+ +         L+ F 
Sbjct: 127 FIYVDNALMDMYATCCVSMDDACMV--FRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFR 184

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            M +  + L+ ++   ++ A TS+    FG+Q+ A VTK G+ S++ V ++++D+Y +  
Sbjct: 185 QMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCS 244

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
              +A   F E+  ++ +  N L++GY E       L +  +M + G   + FT ++++ 
Sbjct: 245 CFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMA 303

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           ACA L+    G+Q+H  +IR+   L  ++ + ++LI+MY KCG +  + QVF        
Sbjct: 304 ACATLAFLNCGQQIHGRIIRR--GLDGNLALSNALIDMYSKCGNIADSHQVFG------- 354

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
           G   +D+V WT+M+  YG +GY +E ++L++ M+ +G +PD V F+ ++SACSH G V  
Sbjct: 355 GMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDE 414

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G+ YF+ MV DY + P  E Y C+VDLL RAG++++A++LI  M  +        +WG  
Sbjct: 415 GLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFK----PDECVWGPF 470

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L AC       LGKLAA + L+L PH  G YVMLSN+YA    W E  +LR+LMK  G K
Sbjct: 471 LGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNK 530

Query: 436 KDVGCSWIEV 445
           K+ G SW+EV
Sbjct: 531 KETGRSWVEV 540



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 137/290 (47%), Gaps = 12/290 (4%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAELM 143
           + + + S L A   +K   +G+ V     K G    ++V +AL+D+YA   + + DA ++
Sbjct: 92  NAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMV 151

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           F  I +KN V    L++GY       GGL + R M    ++ + F+ S  +RAC  + + 
Sbjct: 152 FRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSH 211

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
            FG Q+HA + +      +++ + +S+++MY +C   ++A + F     R       D++
Sbjct: 212 TFGEQLHAAVTKH--GFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQR-------DLI 262

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W +++  Y R+    E + ++  M   G  P+   F ++++AC+    +  G +    +
Sbjct: 263 TWNTLIAGYERSNP-TESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRI 321

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           +    L+      + L+D+  + G +  + ++   M  R   S +  M G
Sbjct: 322 IRR-GLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIG 370



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 11/181 (6%)

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL-VT 241
           LD + FT+S++L+AC G+    +GR VH   I+    L   +++ ++L++MY  C + + 
Sbjct: 89  LDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKH--GLDGFIYVDNALMDMYATCCVSMD 146

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A  VF   G  L+ E++     WT+++  Y         ++++  ML+   + +  +F 
Sbjct: 147 DACMVFR--GIHLKNEVS-----WTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFS 199

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
             + AC+  G    G E     V  +  E      + ++D+ CR     +A +   EM  
Sbjct: 200 IAVRACTSIGSHTFG-EQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQ 258

Query: 362 R 362
           R
Sbjct: 259 R 259


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 137/410 (33%), Positives = 234/410 (57%), Gaps = 13/410 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           LG+L    + +  R+ + +N VIS   +NG    AL     M    +  D++ L S L  
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 205

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
                +   GK++  +  ++G+ + VF+GS+LID+YAK   + D+  +F  +P  + +  
Sbjct: 206 FAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 265

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           N++++G  +  ++  GL+  + M    +  +H + S+++ ACA L+    G+Q+H Y+IR
Sbjct: 266 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 325

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
                  +VF+ S+L++MY KCG +  A  +F+    ++E     D+V WT+M+  Y  +
Sbjct: 326 S--RFDGNVFIASALVDMYAKCGNIRTARWIFD----KME---LYDMVSWTAMIMGYALH 376

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G+  + I L++ M + G KP+ VAF+ V++ACSH G V    +YF  M  DY++ PG EH
Sbjct: 377 GHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH 436

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
           Y+ + DLL R G L++A++ I++M    H   + S+W  LL+AC      EL +  ++K 
Sbjct: 437 YAAVADLLGRVGRLEEAYEFISDM----HIEPTGSVWSTLLAACRVHKNIELAEKVSKKL 492

Query: 396 LELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             +DP N+G YV+LSN+Y+    W +  +LR  M++KG+KK   CSWIE+
Sbjct: 493 FTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEI 542


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 154/433 (35%), Positives = 236/433 (54%), Gaps = 47/433 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I+ + +NG    AL+ F  M  +G+  D   L S ++A  S    R G Q+
Sbjct: 215 RNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQI 274

Query: 109 QAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK- 166
            A V K   + + + +G+AL+D+YAK   +++A L+FD +P++N V   +++ GY  A  
Sbjct: 275 HARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAAS 334

Query: 167 ---------------------LWAG------GLELVRLMPALGLDY---DHFTLSALLRA 196
                                L AG        E VRL   L  +     H+T   LL A
Sbjct: 335 VKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNA 394

Query: 197 CAGLSAAEFGRQVHAYMIRKC----CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           CA L+  + GRQ H  +++          +D+F+ +SLI+MY KCG+V     VF     
Sbjct: 395 CANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVF----- 449

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
             E  + +DVV W +M+  Y +NGY    ++++  ML++G KPD V  + V+SACSH G 
Sbjct: 450 --ERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGL 507

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           V+ G  YF  M  +  L P  +H++C+VDLL RAG LD+A  LI  M  +        +W
Sbjct: 508 VEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDN----VVW 563

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
           G+LL+AC   G  ELGK  A+K +E+DP N G YV+LSN+YA+   W ++ ++R+ M+++
Sbjct: 564 GSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQR 623

Query: 433 GLKKDVGCSWIEV 445
           G+ K  GCSWIE+
Sbjct: 624 GVIKQPGCSWIEI 636



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 180/365 (49%), Gaps = 35/365 (9%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N  K +   +   +N ++S F ++     AL+ F  MH     L+ Y+  S+L+A   + 
Sbjct: 106 NVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLT 165

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           D   G Q+ A ++KS +L  V++GSAL+D+Y+K  ++  A+  FD + V+N V  N+L++
Sbjct: 166 DLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLIT 225

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            Y +       LE+  +M   G++ D  TL++++ ACA  SA   G Q+HA ++++    
Sbjct: 226 CYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKR-DKY 284

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR------------------------LEG 256
            ND+ + ++L++MY KC  V +A  VF+    R                           
Sbjct: 285 RNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSN 344

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            + K+VV W +++  Y +NG  +E ++L+  +      P    F  +++AC++   +KLG
Sbjct: 345 MMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLG 404

Query: 317 IE-YFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            + + + + H +  + G E      + L+D+  + G ++    +   M++R      V  
Sbjct: 405 RQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVER-----DVVS 459

Query: 372 WGALL 376
           W A++
Sbjct: 460 WNAMI 464



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 141/308 (45%), Gaps = 40/308 (12%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           FLD+      L +    K     +++ A + K+ + S +F+ + L+D Y K     DA  
Sbjct: 16  FLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARK 75

Query: 143 MFDEIPVKNSVCANALL-------------------------------SGYCEAKLWAGG 171
           +FD +P +N+   NA+L                               SG+ +   +   
Sbjct: 76  VFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEA 135

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L     M +     + ++  + L ACAGL+    G Q+HA + +    L  DV+M S+L+
Sbjct: 136 LRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLL--DVYMGSALV 193

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KCG+V  A + F       +G   +++V W S++  Y +NG   + ++++  M+ N
Sbjct: 194 DMYSKCGVVACAQRAF-------DGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDN 246

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G +PDE+   +V+SAC+    ++ G++    +V   K        + LVD+  +   +++
Sbjct: 247 GVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNE 306

Query: 352 AWKLINEM 359
           A  + + M
Sbjct: 307 ARLVFDRM 314



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 99/237 (41%), Gaps = 39/237 (16%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           D    + LL +C    +    R++HA +I+      +++F+Q+ L++ YGKCG    A +
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIK--TQFSSEIFIQNRLVDAYGKCGYFEDARK 75

Query: 246 VFNLAGHR-----------------LEGEIN-------KDVVLWTSMLGVYGRNGYFKEV 281
           VF+    R                 L+   N        D   W +M+  + ++  F+E 
Sbjct: 76  VFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEA 135

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           ++ +  M       +E +F + +SAC+    + +GI+    ++   +        S LVD
Sbjct: 136 LRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQ-IHALISKSRYLLDVYMGSALVD 194

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +  + G +  A +  + M  R     ++  W +L++     G        A KALE+
Sbjct: 195 MYSKCGVVACAQRAFDGMAVR-----NIVSWNSLITCYEQNG-------PAGKALEV 239


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 145/431 (33%), Positives = 240/431 (55%), Gaps = 17/431 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++F + L+  Y+ C    NL   T     +     + +  +I+ + R G    A+  F  
Sbjct: 331 VVFSNTLLDMYSKC---GNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDE 387

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D Y + S + A         G+ V ++V K+G  S++ V +ALI++YAK   
Sbjct: 388 MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGS 447

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + +A L+F +IPVK+ V  N ++ GY +  L    LEL   M       D  T++ +L A
Sbjct: 448 VEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQK-QFKPDDITMACVLPA 506

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CAGL+A + GR++H +++R+     +D+ +  +L++MY KCGL+  A  +F++       
Sbjct: 507 CAGLAALDKGREIHGHILRR--GYFSDLHVACALVDMYAKCGLLVLAQLLFDMIP----- 559

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              KD++ WT M+  YG +G+  E I  +  M + G +PDE +F  +++ACSH+G +  G
Sbjct: 560 --KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEG 617

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            ++F  M ++  +EP  EHY+C+VDLL R G L KA+K I  M  +       ++WG LL
Sbjct: 618 WKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIK----PDTTIWGVLL 673

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           S C      +L +  A+   EL+P N   YV+L+N+YA+   W+E+ +LR+ M+++G K+
Sbjct: 674 SGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQ 733

Query: 437 DVGCSWIEVTG 447
           + GCSWIEV G
Sbjct: 734 NPGCSWIEVGG 744



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 149/303 (49%), Gaps = 18/303 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N+++S++ + G+   ++  F  M   G+  + Y     L    ++   +  K+V  +V 
Sbjct: 163 WNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVL 222

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+ S+  V ++LI  Y K   +  A  +FDE+   + V  N++++G         GLE
Sbjct: 223 KLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLE 282

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M  LG++ D  TL ++L ACA +     GR +H + ++ C     +V   ++L++M
Sbjct: 283 IFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKAC--FSEEVVFSNTLLDM 340

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A +VF   G       +  +V WTS++  Y R G + + I L++ M   G 
Sbjct: 341 YSKCGNLNGATEVFVKMG-------DTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGV 393

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGEL 349
           +PD     +++ AC+ +  +  G +     VH Y ++ G        + L+++  + G +
Sbjct: 394 RPDIYTVTSIVHACACSSSLDKGRD-----VHSYVIKNGMGSNLPVTNALINMYAKCGSV 448

Query: 350 DKA 352
           ++A
Sbjct: 449 EEA 451



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 155/313 (49%), Gaps = 19/313 (6%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N    L+  + + +N +I+    NG     L+ F  M + G+ +D   L S L A  ++ 
Sbjct: 251 NLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIG 310

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           +   G+ +     K+ +   V   + L+D+Y+K   ++ A  +F ++     V   ++++
Sbjct: 311 NLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIA 370

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            Y    L++  + L   M + G+  D +T+++++ ACA  S+ + GR VH+Y+I+    +
Sbjct: 371 AYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN--GM 428

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
           G+++ + ++LI MY KCG V +A  VF+           KD+V W +M+G Y +N    E
Sbjct: 429 GSNLPVTNALINMYAKCGSVEEARLVFSKIPV-------KDIVSWNTMIGGYSQNLLPNE 481

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYS 337
            ++L+  M     KPD++    V+ AC+    +  G E     +H + L  G     H +
Sbjct: 482 ALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGRE-----IHGHILRRGYFSDLHVA 535

Query: 338 C-LVDLLCRAGEL 349
           C LVD+  + G L
Sbjct: 536 CALVDMYAKCGLL 548



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 151/325 (46%), Gaps = 19/325 (5%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N  I+ FC  G    A++  +    + + L++Y  CS L      K    GK+V + +  
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLNSY--CSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           +G      +G+ L+ +Y     +     +FD+I        N L+S Y +   +   + L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            + M  LG+  + +T + +L+  A L   +  ++VH Y+++     G++  + +SLI  Y
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLK--LGFGSNTAVVNSLIAAY 240

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
            K G V  A        H L  E+++ DVV W SM+     NG+    ++++  ML+ G 
Sbjct: 241 FKFGGVESA--------HNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 292

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           + D    V+V+ AC++ G + LG     + V     E      + L+D+  + G L+ A 
Sbjct: 293 EVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEE-VVFSNTLLDMYSKCGNLNGAT 351

Query: 354 KLINEMLDRGHGSSSVSMWGALLSA 378
           ++  +M     G +++  W ++++A
Sbjct: 352 EVFVKM-----GDTTIVSWTSIIAA 371


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 160/432 (37%), Positives = 236/432 (54%), Gaps = 19/432 (4%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +  Q+ L+  Y  C H   +G        L  R  + +  +IS + +NG  + AL+ FS 
Sbjct: 189 VFVQNGLVALYAKCGH---IGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQ 245

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M  +G+  D  AL S L A T V D   G+ +   V K G      +  +L   YAK  L
Sbjct: 246 MRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGL 305

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A+  FD++   N +  NA++SGY +       + L   M +  +  D  T+ + + A
Sbjct: 306 VTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLA 365

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            A + + E  + +  Y+ +   N G+D+F+ +SLI+MY KCG V  A +VF+        
Sbjct: 366 SAQVGSLELAQWMDDYVSKS--NYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNS----- 418

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
             +KDVV+W++M+  YG +G   E I LY  M   G  P++V F+ +++AC+H+G VK G
Sbjct: 419 --DKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEG 476

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM-LDRGHGSSSVSMWGAL 375
            E F  M  D+++ P  EHYSC+VDLL RAG L +A   I ++ ++ G     VS+WGAL
Sbjct: 477 WELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPG-----VSVWGAL 530

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           LSAC       LG+ AA K   LDP+N G YV LSNLYA  C+WD +  +R LM+EKGL 
Sbjct: 531 LSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLN 590

Query: 436 KDVGCSWIEVTG 447
           KD+G S IE+ G
Sbjct: 591 KDLGYSVIEING 602



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 154/327 (47%), Gaps = 23/327 (7%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I  + RN      ++ + +M   G+  D +     L A T + D      +   + 
Sbjct: 122 WNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQII 181

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+ S VFV + L+ LYAK   I  A+++FD +  +  V   +++SGY +       L 
Sbjct: 182 KYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALR 241

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M   G+  D   L ++LRA   +   E GR +H ++I+    L ++  +  SL   
Sbjct: 242 MFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIK--MGLEDEPALLISLTAF 299

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCGLVT A   F+            +V++W +M+  Y +NG+ +E + L+  M+    
Sbjct: 300 YAKCGLVTVAKSFFDQMK-------TTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNI 352

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--KLEPGPEHY--SCLVDLLCRAGEL 349
           KPD V   + + A +  G ++L     +WM  DY  K   G + +  + L+D+  + G +
Sbjct: 353 KPDSVTVRSAVLASAQVGSLELA----QWM-DDYVSKSNYGSDIFVNTSLIDMYAKCGSV 407

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALL 376
           + A ++ +   D+      V MW A++
Sbjct: 408 EFARRVFDRNSDK-----DVVMWSAMI 429



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 131/284 (46%), Gaps = 15/284 (5%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R   Q+   +  SG   + F+ + L++  + L  I  A  +FDE    +    NA++  Y
Sbjct: 70  RHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSY 129

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
               ++   +E+ R M   G+  D FT   +L+AC  L        +H  +I+     G+
Sbjct: 130 SRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKY--GFGS 187

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DVF+Q+ L+ +Y KCG +  A  VF+   HR        +V WTS++  Y +NG   E +
Sbjct: 188 DVFVQNGLVALYAKCGHIGVAKVVFDGLYHRT-------IVSWTSIISGYAQNGKAVEAL 240

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +++  M  NG KPD +A V+++ A +    ++ G     +++    LE  P     L   
Sbjct: 241 RMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVI-KMGLEDEPALLISLTAF 299

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
             + G +  A    ++M      +++V MW A++S     G  E
Sbjct: 300 YAKCGLVTVAKSFFDQM-----KTTNVIMWNAMISGYAKNGHAE 338


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 143/400 (35%), Positives = 220/400 (55%), Gaps = 12/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  +N + +N +I+ +   G     ++ F  M   GI      L S L A +   + + G
Sbjct: 268 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG 327

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K +  ++ ++   + +FV S+LIDLY K   I  AE +F  +P  N V  N ++SGY + 
Sbjct: 328 KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKV 387

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +   L +   M   G+  D  T +++L AC+ L+  E G+++H ++I     + N+V 
Sbjct: 388 GSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEI-NEVV 446

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           M  +L++MY KCG V +AL +FN    R       D V WTSM+  YG +G   E +KL+
Sbjct: 447 M-GALLDMYAKCGAVDEALHIFNQLPER-------DFVSWTSMIAAYGSHGQAFEALKLF 498

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M  +  KPD+V F+ ++SACSH G V  G  YF  M+ +Y  +P  EHYSCL+DLL R
Sbjct: 499 EKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGR 558

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
            G L +A++++    D       V +   L SACH   K +LG+   +  +E DP +   
Sbjct: 559 VGRLREAYEILQRTPDI---REDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPST 615

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y++LSN+YA    WDE+ ++R  +KE GLKK+ GCSWIEV
Sbjct: 616 YIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 655



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 162/340 (47%), Gaps = 16/340 (4%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           NP +   +N +++   +N   +  L+ F   +H   +  D +   S L A + +    +G
Sbjct: 66  NPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYG 125

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V  HV KSG+   V V S+ + +YAK  +  DA  +FDE+P ++    N ++S Y + 
Sbjct: 126 KMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQD 185

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 LEL   M   G   D  TL+ ++ +CA L   E G+++H  ++R    L  D F
Sbjct: 186 GQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL--DGF 243

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L++MYGKCG +  A +VF       E    K+VV W SM+  Y   G  K  I+L+
Sbjct: 244 VSSALVDMYGKCGCLEMAKEVF-------EQIQRKNVVSWNSMIAGYSLKGDSKSCIELF 296

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M   G +P      +++ ACS +  ++LG     +++ + ++E      S L+DL  +
Sbjct: 297 RRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRN-RVEADIFVNSSLIDLYFK 355

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
            G +  A  +   M       ++V  W  ++S     G +
Sbjct: 356 CGNIGSAENVFQNM-----PKTNVVSWNVMISGYVKVGSY 390



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 149/298 (50%), Gaps = 19/298 (6%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           +DT  L S L      K  + GK +   +   G  +++ +  +LI+LY    L   A+L+
Sbjct: 1   MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLV 60

Query: 144 FDEIPVKNSVCA-NALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLS 201
           F  I     +   N L++   +  ++  GLE+  RL+    L  D FT  ++L+AC+GL 
Sbjct: 61  FQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLG 120

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
              +G+ VH ++I+       DV + SS + MY KC +   A+++F+    R       D
Sbjct: 121 RVGYGKMVHTHVIKS--GFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPER-------D 171

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YF 320
           V  W +++  Y ++G  ++ ++L+E M ++G KPD V   TVIS+C+    ++ G E + 
Sbjct: 172 VASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHM 231

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           E +   + L+      S LVD+  + G L+ A K + E + R     +V  W ++++ 
Sbjct: 232 ELVRSGFALDGFVS--SALVDMYGKCGCLEMA-KEVFEQIQR----KNVVSWNSMIAG 282



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 29/264 (10%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I   S L+  Y  C    N+G+  N  + +   N + +NV+IS + + GS L AL  F+ 
Sbjct: 343 IFVNSSLIDLYFKC---GNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTD 399

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D     S L A + +     GK++   + +S    +  V  AL+D+YAK   
Sbjct: 400 MRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGA 459

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + +A  +F+++P ++ V   ++++ Y         L+L   M       D  T  A+L A
Sbjct: 460 VDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSA 519

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ----------SSLIEMYGKCGLVTKALQV 246
           C+           HA ++ + C   N +  +          S LI++ G+ G + +A ++
Sbjct: 520 CS-----------HAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEI 568

Query: 247 FNLAGHRLEGEINKDVVLWTSMLG 270
                     +I +DV L +++  
Sbjct: 569 LQRT-----PDIREDVGLLSTLFS 587


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  254 bits (648), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 147/451 (32%), Positives = 257/451 (56%), Gaps = 22/451 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA+  ++  +L  +I+  + +++ Y+ C    ++GT       +  R+ + +N ++S 
Sbjct: 343 QLHAYILKSSTILQVVIL--NAIIVMYSRC---GSIGTSFKVFSNMLERDVVTWNTMVSA 397

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F +NG     L     M   G  +D+  L + L+ +++++    GKQ  A++ + G +  
Sbjct: 398 FVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG-IQF 456

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGYCEAKLWAGGLELVRLM 178
             + S LID+YAK  LI  A+ +F++     ++    NA+++GY +  L   G  + R M
Sbjct: 457 EGMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKM 516

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
               +  +  TL+++L AC  +     G+Q+H + IR  C L  +VF+ ++L++MY K G
Sbjct: 517 IEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIR--CFLNRNVFVGTALLDMYSKSG 574

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +T A  VF      LE    K+ V +T+M+  YG++G  +  + L+ AML +G KPD V
Sbjct: 575 AITYAENVF---AETLE----KNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSV 627

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            FV ++SACS+ G V  G+  F+ M  +YK++P  EHY C+ D+L R G + +A++ +  
Sbjct: 628 TFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKG 687

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN--VGIYVMLSNLYAKF 416
           + + G+   +  +WG+LL AC   G+FELGK+ A K LE++  +   G +V+LSN+YA  
Sbjct: 688 LGEEGN---TFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAE 744

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             WD + ++R+ M++KGL K+ GCSW+EV G
Sbjct: 745 GNWDNVDRVRKEMRQKGLMKEAGCSWVEVAG 775



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 172/365 (47%), Gaps = 17/365 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           RN   +N +I  + +N  P+ A+  F   M      LD     S+LTA + ++    G+Q
Sbjct: 284 RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQ 343

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + A++ KS  +  V + +A+I +Y++   I  +  +F  +  ++ V  N ++S + +  L
Sbjct: 344 LHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGL 403

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              GL LV  M   G   D  TL+ALL   + L + E G+Q HAY+IR          M 
Sbjct: 404 DDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEG---MD 460

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S LI+MY K GL+T A Q+F         + ++D   W +M+  Y +NG  +E   ++  
Sbjct: 461 SYLIDMYAKSGLITTAQQLF-----EKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRK 515

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M+    +P+ V   +++ AC+  G + LG +   + +  + L       + L+D+  ++G
Sbjct: 516 MIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCF-LNRNVFVGTALLDMYSKSG 574

Query: 348 ELDKAWKLINEMLDRGHG--SSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
            +  A  +  E L++     ++ +S +G      H  G+  L    A     + P +V  
Sbjct: 575 AITYAENVFAETLEKNSVTYTTMISSYGQ-----HGMGERALSLFHAMLGSGIKPDSVTF 629

Query: 406 YVMLS 410
             +LS
Sbjct: 630 VAILS 634



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 158/351 (45%), Gaps = 40/351 (11%)

Query: 51  PLP----FNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFG 105
           P P    +N +I  F  N  P+ AL  ++ M        D+Y   S+L A    +  + G
Sbjct: 64  PRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLG 123

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLL----------IHDAEL---MFDEIPVKNS 152
           K +  HV +S + SS  V ++L+++Y+  L            ++ +L   +FD +  +N 
Sbjct: 124 KALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNV 183

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  N ++S Y + +      ++ R M  +G+     +   +  A   +S  +    ++  
Sbjct: 184 VAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGL 243

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           +++   +  +D F+ SS I MY + G V  A ++F+         + ++  +W +M+G Y
Sbjct: 244 VVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCC-------LERNTEVWNTMIGGY 296

Query: 273 GRNGYFKEVIKLY-EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
            +N    E I L+ + M       D+V F++ ++A S    ++LG +     +H Y L+ 
Sbjct: 297 VQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQ-----LHAYILKS 351

Query: 332 GP----EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
                    + ++ +  R G +  ++K+ + ML+R      V  W  ++SA
Sbjct: 352 STILQVVILNAIIVMYSRCGSIGTSFKVFSNMLER-----DVVTWNTMVSA 397



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 9/176 (5%)

Query: 138 HDAELMFDEIPVKNSVCANALLSGY-CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           H A  +FD IP   +V  N ++ G+ C        L   R+  +    +D +T S+ L+A
Sbjct: 54  HQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKA 113

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV---FN---LA 250
           CA   + + G+ +H +++R   + G+   + +SL+ MY  C      L     FN   L 
Sbjct: 114 CAQARSLKLGKALHCHVLRS--HFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLV 171

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
               +    ++VV W +M+  Y +     E  K++  M+  G +P  V+FV V  A
Sbjct: 172 RRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  254 bits (648), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 145/431 (33%), Positives = 239/431 (55%), Gaps = 17/431 (3%)

Query: 17   IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
            ++F + L+  Y+ C    NL   T     +     + +   I+ + R G    A+  F  
Sbjct: 606  VVFSNTLLDMYSKC---GNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDE 662

Query: 77   MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
            M   G+  D Y + S + A         G+ V ++V K+G  S++ V +ALI++YAK   
Sbjct: 663  MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGS 722

Query: 137  IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
            + +A L+F +IPVK+ V  N ++ GY +  L    LEL   M       D  T++ +L A
Sbjct: 723  VEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK-QFKPDDITMACVLPA 781

Query: 197  CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            CAGL+A + GR++H +++R+     +D+ +  +L++MY KCGL+  A  +F++       
Sbjct: 782  CAGLAALDKGREIHGHILRR--GYFSDLHVACALVDMYAKCGLLVLAQLLFDMIP----- 834

Query: 257  EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               KD++ WT M+  YG +G+  E I  +  M + G +PDE +F  +++ACSH+G +  G
Sbjct: 835  --KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEG 892

Query: 317  IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             ++F  M ++  +EP  EHY+C+VDLL R G L KA+K I  M  +       ++WG LL
Sbjct: 893  WKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIK----PDTTIWGVLL 948

Query: 377  SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
            S C      +L +  A+   EL+P N   YV+L+N+YA+   W+E+ +LR+ M+++G K+
Sbjct: 949  SGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQ 1008

Query: 437  DVGCSWIEVTG 447
            + GCSWIEV G
Sbjct: 1009 NPGCSWIEVGG 1019



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 147/303 (48%), Gaps = 18/303 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N+++S++ + G+   ++  F  M   G+  + Y     L    ++   +  K+V  +V 
Sbjct: 438 WNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVL 497

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+ S+  V ++LI  Y K   +  A  +FDE+   + V  N++++G         GLE
Sbjct: 498 KLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLE 557

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M  LG++ D  TL ++L A A +     GR +H + ++ C     +V   ++L++M
Sbjct: 558 IFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKAC--FSEEVVFSNTLLDM 615

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A +VF   G       +  +V WTS +  Y R G + + I L++ M   G 
Sbjct: 616 YSKCGNLNGATEVFVKMG-------DTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGV 668

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGEL 349
           +PD     +++ AC+ +  +  G +     VH Y ++ G        + L+++  + G +
Sbjct: 669 RPDIYTVTSIVHACACSSSLDKGRD-----VHSYVIKNGMGSNLPVTNALINMYAKCGSV 723

Query: 350 DKA 352
           ++A
Sbjct: 724 EEA 726



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 154/313 (49%), Gaps = 19/313 (6%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N    L+  + + +N +I+    NG     L+ F  M + G+ +D   L S L A  ++ 
Sbjct: 526 NLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIG 585

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           +   G+ +     K+ +   V   + L+D+Y+K   ++ A  +F ++     V   + ++
Sbjct: 586 NLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIA 645

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            Y    L++  + L   M + G+  D +T+++++ ACA  S+ + GR VH+Y+I+    +
Sbjct: 646 AYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN--GM 703

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
           G+++ + ++LI MY KCG V +A  VF+           KD+V W +M+G Y +N    E
Sbjct: 704 GSNLPVTNALINMYAKCGSVEEARLVFSKIPV-------KDIVSWNTMIGGYSQNSLPNE 756

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYS 337
            ++L+  M     KPD++    V+ AC+    +  G E     +H + L  G     H +
Sbjct: 757 ALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGRE-----IHGHILRRGYFSDLHVA 810

Query: 338 C-LVDLLCRAGEL 349
           C LVD+  + G L
Sbjct: 811 CALVDMYAKCGLL 823



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 149/325 (45%), Gaps = 19/325 (5%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N  I+ FC  G    A++  +    + + L++Y  CS L      K    GK+V + +  
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLNSY--CSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           +G      +G+ L+ +Y     +     +FD+I        N L+S Y +   +   + L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            + M  LG+  + +T + +L+  A L   +  ++VH Y+++     G++  + +SLI  Y
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLK--LGFGSNTAVVNSLIAAY 515

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
            K G V  A        H L  E+++ DVV W SM+     NG+    ++++  ML+ G 
Sbjct: 516 FKFGGVESA--------HNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 567

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           + D    V+V+ A ++ G + LG     + V     E      + L+D+  + G L+ A 
Sbjct: 568 EVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEE-VVFSNTLLDMYSKCGNLNGAT 626

Query: 354 KLINEMLDRGHGSSSVSMWGALLSA 378
           ++  +M     G +++  W + ++A
Sbjct: 627 EVFVKM-----GDTTIVSWTSTIAA 646


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  254 bits (648), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 143/406 (35%), Positives = 227/406 (55%), Gaps = 15/406 (3%)

Query: 42  CLKF--LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           CL F  +  R+ + +N +I+   +NG+    L  F +M   G+  D +   S L A    
Sbjct: 368 CLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGW 427

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           +    G ++   + KS      FVG ALID+Y+K  ++  AE + D +  +  V  NA++
Sbjct: 428 QALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAII 487

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           SG+   K      +    M  +G+D D+FT + +L  CA L   E G+Q+HA +I+K   
Sbjct: 488 SGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKK--E 545

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L +D ++ S+L++MY KCG     +Q F L     E   N+D V W +M+  Y ++G  +
Sbjct: 546 LQSDAYISSTLVDMYSKCG----NMQDFQLI---FEKAPNRDFVTWNAMVCGYAQHGLGE 598

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E +K++E M +   KP+   F+ V+ AC H G V+ G+ YF  M+ +Y L+P  EHYSC+
Sbjct: 599 EALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCV 658

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VD++ R+G++ KA +LI  M       +   +W  LLS C   G  E+ + AA   L+L+
Sbjct: 659 VDIMGRSGQVSKALELIEGM----PFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLE 714

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           P +   YV+LSN+YA   MW+E+ +LR++M+  GLKK+ GCSWIE+
Sbjct: 715 PEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEI 760



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 162/325 (49%), Gaps = 12/325 (3%)

Query: 35  NLGTLTNCL-KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           NL   +N L   L   N   +N +I  + R+   + AL  F  +   G+ LD  +L  + 
Sbjct: 261 NLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAX 320

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A   +K    G QV     KS   S++ V +A++D+Y K   + +A L+F+E+  +++V
Sbjct: 321 RACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAV 380

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             NA+++ + +       L L   M   G++ D FT  ++L+ACAG  A   G ++H  +
Sbjct: 381 SWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRI 440

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           I+    +G D F+  +LI+MY KCG++ KA ++ +    RL     + VV W +++  + 
Sbjct: 441 IKS--RMGLDSFVGIALIDMYSKCGMMEKAEKLHD----RLA---EQTVVSWNAIISGFS 491

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
                +E  K +  ML  G  PD   + T++  C++   V+LG +    ++   +L+   
Sbjct: 492 LQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKK-ELQSDA 550

Query: 334 EHYSCLVDLLCRAGELDKAWKLINE 358
              S LVD+  + G + + ++LI E
Sbjct: 551 YISSTLVDMYSKCGNM-QDFQLIFE 574



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 176/369 (47%), Gaps = 32/369 (8%)

Query: 83  FLDTYALC--------SSLTASTSVKDARFGK-QVQAHVTKSGWLSSVFVGSALIDLYAK 133
            LD YA C          L     ++ A  G  Q+  H  K+ + + V +G+A +D+Y K
Sbjct: 199 LLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMK 258

Query: 134 LLLIHD-AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
              + D +  +F+ +P  N    NA++ GY  +      L + RL+   GL  D  +LS 
Sbjct: 259 CNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSG 318

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
             RACA +     G QVH   ++  C   +++ + +++++MYGKCG + +A  VF     
Sbjct: 319 AXRACAVIKGDLEGLQVHGLSMKSLCQ--SNICVANAILDMYGKCGALVEACLVF----- 371

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
             E  +++D V W +++  + +NG  ++ + L+  ML +G +PDE  + +V+ AC+    
Sbjct: 372 --EEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQA 429

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYS--CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
           +  G+E    ++   K   G + +    L+D+  + G ++KA KL + + ++     +V 
Sbjct: 430 LNCGMEIHNRII---KSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQ-----TVV 481

Query: 371 MWGALLSACHDCGKFELGKLAAQKALEL--DPHNVGIYVMLSNLYAKFCMWDEIGQLREL 428
            W A++S      + E  +    K LE+  DP N   Y  + +  A     +   Q+   
Sbjct: 482 SWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNF-TYATILDTCANLVTVELGKQIHAQ 540

Query: 429 MKEKGLKKD 437
           + +K L+ D
Sbjct: 541 IIKKELQSD 549



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 48/259 (18%)

Query: 45  FLNPRNPLPFNVV-ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           F N ++  PF  + IS F    +     KTFS  H+     D  ALC             
Sbjct: 15  FFNFQSKSPFKTLPISPFSSYQATPTKKKTFS--HIFQECSDRKALCP------------ 60

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            GKQ  A +  + +  +VFV + LI +Y K   +  A  +FD +P +++V  NA+L GY 
Sbjct: 61  -GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYA 119

Query: 164 EAKLWAGGLELVRLMPA---------------LGLDYDHFTLSALLRACAGLSAAEFGRQ 208
                    +L   MP                +G  +D  T + +L++C+ L     G Q
Sbjct: 120 GRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQ 179

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ---------------VFNLAGHR 253
           +H   ++       DV   S+L++MY KC +    L+                  L GH 
Sbjct: 180 IHGLAVK--MGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHA 237

Query: 254 LEGEINKDVVLWTSMLGVY 272
           L+ +   DVV+ T+ L +Y
Sbjct: 238 LKTDFGTDVVIGTATLDMY 256



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 28/146 (19%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T S + + C+   A   G+Q HA MI         VF+ + LI+MY KC  +  A +VF 
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMI--LTEFKPTVFVTNCLIQMYIKCSDLGFAFKVF- 100

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN---------------GT 293
                 +G   +D V W +ML  Y   G      KL++AM                  GT
Sbjct: 101 ------DGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGT 154

Query: 294 KPDEVAFVTVISACS----HTGQVKL 315
             D   F  V+ +CS    H G +++
Sbjct: 155 VFDRTTFAVVLKSCSSLEDHGGGIQI 180


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  254 bits (648), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 143/400 (35%), Positives = 220/400 (55%), Gaps = 12/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  +N + +N +I+ +   G     ++ F  M   GI      L S L A +   + + G
Sbjct: 460 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG 519

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K +  ++ ++   + +FV S+LIDLY K   I  AE +F  +P  N V  N ++SGY + 
Sbjct: 520 KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKV 579

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +   L +   M   G+  D  T +++L AC+ L+  E G+++H ++I     + N+V 
Sbjct: 580 GSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEI-NEVV 638

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           M  +L++MY KCG V +AL +FN    R       D V WTSM+  YG +G   E +KL+
Sbjct: 639 M-GALLDMYAKCGAVDEALHIFNQLPER-------DFVSWTSMIAAYGSHGQAFEALKLF 690

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M  +  KPD+V F+ ++SACSH G V  G  YF  M+ +Y  +P  EHYSCL+DLL R
Sbjct: 691 EKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGR 750

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
            G L +A++++    D       V +   L SACH   K +LG+   +  +E DP +   
Sbjct: 751 VGRLREAYEILQRTPDI---REDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPST 807

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y++LSN+YA    WDE+ ++R  +KE GLKK+ GCSWIEV
Sbjct: 808 YIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 847



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 162/340 (47%), Gaps = 16/340 (4%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           NP +   +N +++   +N   +  L+ F   +H   +  D +   S L A + +    +G
Sbjct: 258 NPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYG 317

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V  HV KSG+   V V S+ + +YAK  +  DA  +FDE+P ++    N ++S Y + 
Sbjct: 318 KMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQD 377

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 LEL   M   G   D  TL+ ++ +CA L   E G+++H  ++R    L  D F
Sbjct: 378 GQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL--DGF 435

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L++MYGKCG +  A +VF       E    K+VV W SM+  Y   G  K  I+L+
Sbjct: 436 VSSALVDMYGKCGCLEMAKEVF-------EQIQRKNVVSWNSMIAGYSLKGDSKSCIELF 488

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M   G +P      +++ ACS +  ++LG     +++ + ++E      S L+DL  +
Sbjct: 489 RRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRN-RVEADIFVNSSLIDLYFK 547

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
            G +  A  +   M       ++V  W  ++S     G +
Sbjct: 548 CGNIGSAENVFQNM-----PKTNVVSWNVMISGYVKVGSY 582



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 146/291 (50%), Gaps = 19/291 (6%)

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           C +   + S  +   GK +   +   G  +++ +  +LI+LY    L   A+L+F  I  
Sbjct: 199 CLARVTAGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIEN 258

Query: 150 KNSVCA-NALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
              +   N L++   +  ++  GLE+  RL+    L  D FT  ++L+AC+GL    +G+
Sbjct: 259 PLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGK 318

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
            VH ++I+       DV + SS + MY KC +   A+++F+    R       DV  W +
Sbjct: 319 MVHTHVIKS--GFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPER-------DVASWNN 369

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHD 326
           ++  Y ++G  ++ ++L+E M ++G KPD V   TVIS+C+    ++ G E + E +   
Sbjct: 370 VISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSG 429

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + L+      S LVD+  + G L+ A K + E + R     +V  W ++++
Sbjct: 430 FALDGFVS--SALVDMYGKCGCLEMA-KEVFEQIQR----KNVVSWNSMIA 473



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 29/264 (10%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I   S L+  Y  C    N+G+  N  + +   N + +NV+IS + + GS L AL  F+ 
Sbjct: 535 IFVNSSLIDLYFKC---GNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTD 591

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D     S L A + +     GK++   + +S    +  V  AL+D+YAK   
Sbjct: 592 MRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGA 651

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + +A  +F+++P ++ V   ++++ Y         L+L   M       D  T  A+L A
Sbjct: 652 VDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSA 711

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ----------SSLIEMYGKCGLVTKALQV 246
           C+           HA ++ + C   N +  +          S LI++ G+ G + +A ++
Sbjct: 712 CS-----------HAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEI 760

Query: 247 FNLAGHRLEGEINKDVVLWTSMLG 270
                     +I +DV L +++  
Sbjct: 761 LQRT-----PDIREDVGLLSTLFS 779


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  254 bits (648), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 143/406 (35%), Positives = 227/406 (55%), Gaps = 15/406 (3%)

Query: 42  CLKF--LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           CL F  +  R+ + +N +I+   +NG+    L  F +M   G+  D +   S L A    
Sbjct: 431 CLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGW 490

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           +    G ++   + KS      FVG ALID+Y+K  ++  AE + D +  +  V  NA++
Sbjct: 491 QALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAII 550

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           SG+   K      +    M  +G+D D+FT + +L  CA L   E G+Q+HA +I+K   
Sbjct: 551 SGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKK--E 608

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L +D ++ S+L++MY KCG     +Q F L     E   N+D V W +M+  Y ++G  +
Sbjct: 609 LQSDAYISSTLVDMYSKCG----NMQDFQLI---FEKAPNRDFVTWNAMVCGYAQHGLGE 661

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E +K++E M +   KP+   F+ V+ AC H G V+ G+ YF  M+ +Y L+P  EHYSC+
Sbjct: 662 EALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCV 721

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VD++ R+G++ KA +LI  M       +   +W  LLS C   G  E+ + AA   L+L+
Sbjct: 722 VDIMGRSGQVSKALELIEGM----PFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLE 777

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           P +   YV+LSN+YA   MW+E+ +LR++M+  GLKK+ GCSWIE+
Sbjct: 778 PEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEI 823



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 169/359 (47%), Gaps = 25/359 (6%)

Query: 33  KKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           + ++G        +  R+ + +N +IS +  NG     +  F  M   G   D       
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L + +S++D   G Q+     K G+   V  GSAL+D+YAK   +  +   F  +P KN 
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNW 240

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  +A+++G  +     GGLEL + M   G+     T +++ R+CAGLSA   G Q+H +
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGH 300

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLEGEINKDVVLWTSMLGV 271
            ++   + G DV + ++ ++MY KC  ++ A ++FN L  H L+         + +++  
Sbjct: 301 ALK--TDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQS--------YNAIIVG 350

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           Y R+    E + ++  +  +G   DEV+      AC+    +K  +E  +  VH   ++ 
Sbjct: 351 YARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACA---VIKGDLEGLQ--VHGLSMKS 405

Query: 332 GPEHYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
             +   C    ++D+  + G L +A  +  EM+ R     +VS W A+++A    G  E
Sbjct: 406 LCQSNICVANAILDMYGKCGALVEACLVFEEMVSR----DAVS-WNAIIAAHEQNGNEE 459



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 142/349 (40%), Gaps = 61/349 (17%)

Query: 45  FLNPRNPLPFNVV-ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           F N ++  PF  + IS F    +     KTFS  H+     D  ALC             
Sbjct: 15  FFNFQSKSPFKTLPISPFSSYQATPTKKKTFS--HIFQECSDRKALCP------------ 60

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            GKQ  A +  + +  +VFV + LI +Y K   +  A  +FD +P +++V  NA+L GY 
Sbjct: 61  -GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYA 119

Query: 164 EAKLWAGGLELVRLMPA-------------------------------LGLDYDHFTLSA 192
                    +L   MP                                +G  +D  T + 
Sbjct: 120 GRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAV 179

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L++C+ L     G Q+H   ++       DV   S+L++MY KC  +  ++Q F    H
Sbjct: 180 VLKSCSSLEDHGGGIQIHGLAVK--MGFDCDVVTGSALLDMYAKCKKLDCSIQFF----H 233

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
            +     K+ V W++++    +N   +  ++L++ M   G    +  F +V  +C+    
Sbjct: 234 SMP---EKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSA 290

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEM 359
           ++LG +      H  K + G +    +  +D+  +   L  A KL N +
Sbjct: 291 LRLGSQLHG---HALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSL 336


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 241/448 (53%), Gaps = 28/448 (6%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLT---NCLKFLNPRNPLPFNVVI 58
           VH H F  G        ++ +  L  T        G L    N    +  RN + +  +I
Sbjct: 38  VHEHVFSNG--------YEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMI 89

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           S +  +     AL     M   G+  + Y   S L A   + + R   Q+   + K G  
Sbjct: 90  SAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLR---QLHGSILKVGLE 146

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S VFV SALID Y+KL   HDA  +F+E+   + V  N+++ G+ +       L L + M
Sbjct: 147 SDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRM 206

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
                  D  TL+++LRAC GL+  E GRQVH ++++       D+ + ++L++MY KCG
Sbjct: 207 KRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK----YDQDLILNNALLDMYCKCG 262

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
               +L+  NL   R+  E  KDV+ W++M+    +NG+  + +KL+EAM   G KP+ +
Sbjct: 263 ----SLEDANLLFTRMMTE--KDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYI 316

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
             + V+ ACSH G V  G  YF+ M   + ++PG EHY C++DLL RAG+LD+A KLI+E
Sbjct: 317 TILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHE 376

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M    H   +V+ W  LL AC      +L   AA++ L+LDP + G Y++LSN+YA    
Sbjct: 377 M---NHEPDAVT-WRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQK 432

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           W+++ ++R  M+ +G+KKD GCSWIEV+
Sbjct: 433 WEDVAEVRRKMRTRGVKKDPGCSWIEVS 460



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 18/194 (9%)

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           L  D  T S L++ C    A +  R VH ++           F+ ++LI MY K GL+ +
Sbjct: 12  LSADAITYSELIKCCLVRGAVQQARLVHEHVFSN--GYEPKTFLINTLINMYVKFGLLDE 69

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A  +F+    R       +VV WT+M+  Y  +    + +     ML  G +P+   + +
Sbjct: 70  ARNLFDEMPDR-------NVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSS 122

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           V+ AC       L +      +    LE      S L+D   + GE   A  + NEM+  
Sbjct: 123 VLRACDGL----LNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMI-- 176

Query: 363 GHGSSSVSMWGALL 376
              +  + +W +++
Sbjct: 177 ---TGDLVVWNSII 187


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/403 (34%), Positives = 224/403 (55%), Gaps = 15/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + +  R+ + +  +++   +NG  L AL  F  M   G+ +D Y   S LTA  ++  +
Sbjct: 235 FQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAAS 294

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GKQ+ A++T++ +  +VFVGSAL+D+Y+K   I  AE +F  +  +N +   A++ GY
Sbjct: 295 EEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       +     M   G+  D FTL +++ +CA L++ E G Q H   +     L  
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLAL--VSGLMR 412

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEV 281
            + + ++L+ +YGKCG +  A        HRL  E++  D V WT+++  Y + G  KE 
Sbjct: 413 YITVSNALVTLYGKCGSIEDA--------HRLFDEMSFHDQVSWTALVTGYAQFGKAKET 464

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           I L+E ML+NG KPD V F+ V+SACS  G V+ G +YF+ M  D+ + P  +HY+C++D
Sbjct: 465 IDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMID 524

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           L  R+G   +A + I +M    H   +   W  LLS+C   G  E+GK AA+  LE DP 
Sbjct: 525 LYSRSGRFKEAEEFIKQM---PHSPDAFG-WATLLSSCRLRGNMEIGKWAAENLLETDPQ 580

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           N   YV+L +++A    W E+  LR  M+++ +KK+ GCSWI+
Sbjct: 581 NPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 182/389 (46%), Gaps = 55/389 (14%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALC 90
           H + +  +      +  R+ + +N +I+ F   GSP  +++ + + +    +      L 
Sbjct: 91  HSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLS 150

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           + +  ++++ D   G  V   V + G+ +  FVGS L+D+YAK+ LI DA  +F E+  K
Sbjct: 151 AMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAK 210

Query: 151 NSVCANALLSGYCEAKL------------------WAG-------------GLELVRLMP 179
             V  N L++G    K+                  W                L++ R M 
Sbjct: 211 TVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMR 270

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
           A G+  D +T  ++L AC  L+A+E G+Q+HAY+ R      ++VF+ S+L++MY KC  
Sbjct: 271 AEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYE--DNVFVGSALVDMYSKCRS 328

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           +  A  VF     R       +++ WT+M+  YG+N   +E ++ +  M M+G KPD+  
Sbjct: 329 IRLAEAVFRRMTCR-------NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKL 355
             +VIS+C++   ++ G ++     H   L  G   Y    + LV L  + G ++ A +L
Sbjct: 382 LGSVISSCANLASLEEGAQF-----HCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGK 384
            +EM      S     W AL++     GK
Sbjct: 437 FDEMSFHDQVS-----WTALVTGYAQFGK 460


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 231/398 (58%), Gaps = 15/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N++I    +NG    A+  F  M   G     + + S + A  +  D  F +Q+
Sbjct: 62  RSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQL 121

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K+   + VFVG+ALID+YAK   I DA  +F+ +P +N V  +++++G+ + +L+
Sbjct: 122 HAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELY 181

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GL L      +GL+ + F +S+++RACAGL+A   GRQVHA + R     G + F+ S
Sbjct: 182 EEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRT--GFGPNNFVAS 239

Query: 229 SLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +L++MY KCG + +A  +F N+          K+VVLW +++  + ++    EV+ L+E 
Sbjct: 240 ALVDMYAKCGSIEEAYVLFCNIE--------KKNVVLWNAIISGFAKHACSSEVMNLFEE 291

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G +PDEV +V V+SAC H G V  G  YF+ M  ++ + P   HYSC+VD+L R G
Sbjct: 292 MQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGG 351

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            + +A +L+ +M      +++ SMWG+LL++C   G  EL ++AA+   E++P   G YV
Sbjct: 352 LVHEAHELMTKM----PFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYV 407

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +L+N YA    W+E  + R+ +K   + K+ G SWIE+
Sbjct: 408 LLANTYAASKKWEEAAKARKSLKGSEILKERGKSWIEI 445



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 146/312 (46%), Gaps = 25/312 (8%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK     V + G  +     + L+++Y+K  LI  A  +FDEIP ++ V  N ++    +
Sbjct: 17  GKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERSMVSWNIMIGTCVQ 76

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  +++   M   G     FT+S+++ ACA      F RQ+HA+ I+   +   DV
Sbjct: 77  NGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDA--DV 134

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++LI++Y KCG +  A  VF       EG   ++ V W+S++  + +N  ++E + L
Sbjct: 135 FVGTALIDVYAKCGSIEDASCVF-------EGMPERNDVTWSSIVAGFVQNELYEEGLVL 187

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--KLEPGPEHY--SCLV 340
           +      G + ++    +VI AC+    +  G +     VH    +   GP ++  S LV
Sbjct: 188 FARGKEMGLENNQFMISSVIRACAGLAALIEGRQ-----VHAIVCRTGFGPNNFVASALV 242

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALEL 398
           D+  + G +++A+ L   +  +     +V +W A++S  A H C    +      +   +
Sbjct: 243 DMYAKCGSIEEAYVLFCNIEKK-----NVVLWNAIISGFAKHACSSEVMNLFEEMQQTGM 297

Query: 399 DPHNVGIYVMLS 410
            P  V    +LS
Sbjct: 298 QPDEVTYVAVLS 309


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 242/479 (50%), Gaps = 47/479 (9%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
             HAH  ++GL  I      SRL+   +T  H + +    +    +   N   +N +I  
Sbjct: 25  QAHAHILKSGL--IHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRA 82

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           +  + +P  AL  F  M    +  D Y    +L +  S      G+Q+  HV K+G    
Sbjct: 83  YANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDD 142

Query: 121 VFVGSALIDLYAKLLLIHDAELMFD--------------------------------EIP 148
           +F+ + LI LYA    I DA  + D                                E P
Sbjct: 143 LFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETP 202

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
           VKN V  NA+++GY  A  ++  L L   M   G+  D+ TL ++L ACA + A   G  
Sbjct: 203 VKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEW 262

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           VHAY+ +   ++  D F+ ++L++MY KCG + KAL+VFN         + KD+  W S+
Sbjct: 263 VHAYIDKNGISI--DGFVATALVDMYSKCGSIEKALEVFNSC-------LRKDISTWNSI 313

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +     +G  +  ++++  ML+ G KP+EV FV V+SACS  G +  G E F  MVH + 
Sbjct: 314 ISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHG 373

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           ++P  EHY C+VDLL R G L++A +L+ +M  +    +SV +W +LL AC + G  EL 
Sbjct: 374 IQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQK---EASV-VWESLLGACRNHGNVELA 429

Query: 389 KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +  AQK LEL P     +V LSN+YA    W ++ ++R+ M+ +G++KD GCS IEV G
Sbjct: 430 ERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDG 488


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 145/400 (36%), Positives = 226/400 (56%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I+   RNG  + AL+ F  M   G+ +D   + S L A+  ++D  FG+ V
Sbjct: 167 KDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWV 226

Query: 109 QAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
                +SG  +  V+VGSAL+D+Y+K     DA  +F+E+P +N V   AL++GY +   
Sbjct: 227 HGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNR 286

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +   L++ + M   G++ +  T+++ L ACA L + + GR +H Y+ R    LG +  + 
Sbjct: 287 YKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRS--KLGLNSKLG 344

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L++MY KCG V +AL VF       E    KDV  WT+M+      G     + L+  
Sbjct: 345 TALVDMYSKCGCVDEALLVF-------EKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQ 397

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M+ +  +P+ V F+ V+SAC+H G V  G+E F  M+ DY+LEP  +HY C+VDLL RAG
Sbjct: 398 MIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAG 457

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L++A K I  M        +  +WGAL S C     FELG+      ++L PH+ G Y+
Sbjct: 458 RLEEAIKFIESM----PMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYI 513

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +L+NLY++   W+    +R LMK KG+ K  GCSWIEV G
Sbjct: 514 LLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNG 553



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 186/403 (46%), Gaps = 36/403 (8%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I  F  +  P   L  +S +  HG+  D +     L A + +++     Q  AH+ 
Sbjct: 72  WNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQFYAHIV 130

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G     FV ++L+  +A    +  +  +F E   K+ V   AL++G          LE
Sbjct: 131 KFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALE 190

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M + G++ D  T+ ++L A A L    FGR VH + + +   +  DV++ S+L++M
Sbjct: 191 CFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYV-ESGRVIWDVYVGSALVDM 249

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG    A++VFN    R       ++V W +++  Y +   +KE +K+++ M++ G 
Sbjct: 250 YSKCGYCDDAVKVFNEMPTR-------NLVSWGALIAGYVQCNRYKEALKVFQEMIIEGI 302

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA- 352
           +P++    + ++AC+  G +  G    E+ V   KL    +  + LVD+  + G +D+A 
Sbjct: 303 EPNQSTVTSALTACAQLGSLDQGRWLHEY-VDRSKLGLNSKLGTALVDMYSKCGCVDEAL 361

Query: 353 -------------WK-LINEMLDRGHGSSSVSMWGALL-SACHDCGKFELGKLAA----- 392
                        W  +IN +  RG   SS++++  ++ S     G   LG L+A     
Sbjct: 362 LVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGG 421

Query: 393 --QKALELDPHNVGIYVMLSNLYAKFCMWD---EIGQLRELMK 430
              + LEL    +  Y +  N+    CM D     G+L E +K
Sbjct: 422 LVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIK 464


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 247/461 (53%), Gaps = 50/461 (10%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S L+  Y+ CR    + +       ++ RN + +N +I+ + +NG    AL+ F  M   
Sbjct: 190 SALVDMYSKCR---VVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNC 246

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK-SGWLSSVFVGSALIDLYAKLLLIHD 139
           GI  D   L S  +A  S+   R G Q+ A V K   + + + +G+AL+D+YAK   +++
Sbjct: 247 GIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNE 306

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAK----------------------LWAG------G 171
           A L+FD +P+++ V   +++SGY +A                       L AG       
Sbjct: 307 ARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGEN 366

Query: 172 LELVRLMPALGLDY---DHFTLSALLRACAGLSAAEFGRQVHAYMIRKC----CNLGNDV 224
            E VRL   L  +     H+T   LL ACA L+  + GRQ H ++++          +D+
Sbjct: 367 EEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDI 426

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ +SLI+MY KCGLV     VF       E  + +D V W +M+  Y +NGY  E +++
Sbjct: 427 FVGNSLIDMYMKCGLVEDGRLVF-------ERMLERDNVSWNAMIVGYAQNGYGTEALEI 479

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  ML++G +PD V  + V+SACSH G V+ G  YF+ M  ++ L P  +HY+C+VDLL 
Sbjct: 480 FREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLG 539

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG LD+A  LI  M           +WG+LL+AC   G   LGK  A++ LE+DP N G
Sbjct: 540 RAGCLDEANNLIQTM----PMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSG 595

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            YV+LSN+YA+   W ++ ++R+ M++ G+ K  GCSWI +
Sbjct: 596 PYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISI 636



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 175/365 (47%), Gaps = 35/365 (9%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N  K +  R+   +N ++S F +      AL+    MH     L+ Y+  S+L+A   + 
Sbjct: 106 NLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLM 165

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           D   G Q+   + KS +   V++GSAL+D+Y+K  ++  A+  FD++ V+N V  N+L++
Sbjct: 166 DLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLIT 225

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            Y +       LE+   M   G++ D  TL+++  ACA LSA   G Q+HA ++ K    
Sbjct: 226 CYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVM-KHDKY 284

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR------------------------LEG 256
            ND+ + ++L++MY KC  V +A  VF+    R                           
Sbjct: 285 RNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSN 344

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            + ++VV W +++  Y +NG  +E ++L+  +      P    F  +++AC++   +KLG
Sbjct: 345 MMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLG 404

Query: 317 IE-YFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            + +   + H +  + G +      + L+D+  + G ++    +   ML+R + S     
Sbjct: 405 RQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVS----- 459

Query: 372 WGALL 376
           W A++
Sbjct: 460 WNAMI 464



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 138/308 (44%), Gaps = 40/308 (12%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           FLD+      L      K     + V A + K+ + S +F+ + L+D+Y K   + DA  
Sbjct: 16  FLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARK 75

Query: 143 MFDEIPVKNSV------------------------------CA-NALLSGYCEAKLWAGG 171
           +FD +  +N+                               C+ NA++SG+ +   +   
Sbjct: 76  VFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEA 135

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L  V  M +     + ++  + L ACAGL     G Q+H  + +   +L  DV+M S+L+
Sbjct: 136 LRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSL--DVYMGSALV 193

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KC +V  A + F+    R       ++V W S++  Y +NG   + ++++  M+  
Sbjct: 194 DMYSKCRVVASAQRAFDDMDVR-------NIVSWNSLITCYEQNGPAGKALEVFVRMMNC 246

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G +PDE+   +V SAC+    ++ G++    ++   K        + LVD+  +   +++
Sbjct: 247 GIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNE 306

Query: 352 AWKLINEM 359
           A  + + M
Sbjct: 307 ARLVFDRM 314


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/397 (36%), Positives = 228/397 (57%), Gaps = 19/397 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS +  N     ALK    M   G+  + +   S L A   + + R   Q+
Sbjct: 119 RNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR---QL 174

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K+G  S VFV SALID+Y+K   + +A  +FDE+P ++ V  N+++ G+ +    
Sbjct: 175 HCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDG 234

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M   G   D  TL+++LRAC GL+  E GRQVH ++++       D+ + +
Sbjct: 235 NEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK----FDQDLILNN 290

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG    +L+  N A  R+   + KDV+ W++M+    +NGY ++ ++L+E+M
Sbjct: 291 ALIDMYCKCG----SLEDANSAFSRM---VEKDVISWSTMVAGLAQNGYSRQALELFESM 343

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G++P+ +  + V+ ACSH G V+ G  YF  M   + ++PG EHY CL+DLL RAG 
Sbjct: 344 KESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGR 403

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD+A KLI+EM            W  LL AC      +L   AA+K +EL+P + G Y++
Sbjct: 404 LDEAVKLIHEM----ECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYIL 459

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W+++ ++R+ M  +G++K  GCSWIEV
Sbjct: 460 LSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEV 496



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 171/349 (48%), Gaps = 28/349 (8%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           +P P     ++FC       A++    M  HG+F D       +   ++    + GK+V 
Sbjct: 19  DPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVH 78

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
            H+   G+   +FV + L+++Y K  L+ +AE +FDE+P +N V    ++S Y   KL  
Sbjct: 79  EHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSN-KLND 137

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             L+ + LM   G+  + FT S++LRAC GL      RQ+H  +I+    L +DVF++S+
Sbjct: 138 KALKCLILMFREGVRPNMFTYSSVLRACDGLPNL---RQLHCGIIK--TGLESDVFVRSA 192

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           LI++Y K   +  AL VF+    R       D+V+W S++G + +N    E + L++ M 
Sbjct: 193 LIDVYSKWSDLDNALGVFDEMPTR-------DLVVWNSIIGGFAQNSDGNEALNLFKRMK 245

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
             G   D+    +V+ AC+    ++LG +     VH  K +      + L+D+ C+ G L
Sbjct: 246 RAGFLADQATLTSVLRACTGLALLELGRQVH---VHVLKFDQDLILNNALIDMYCKCGSL 302

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           + A    + M+++      V  W  +++     G        +++ALEL
Sbjct: 303 EDANSAFSRMVEK-----DVISWSTMVAGLAQNG-------YSRQALEL 339


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 136/398 (34%), Positives = 235/398 (59%), Gaps = 15/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQ 107
           ++ + +  +I  + +NGS   A+ +F  M   G+   D +  CS L+AS  +KD    K 
Sbjct: 105 KDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKS 164

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAK 166
           +   VTK+G+   V V +ALID+YAK + +  A  +    P   N V   +++ GY E  
Sbjct: 165 IHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETD 224

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L +   +   G++ + FT S++++ CA  +  E G Q+HA +I+   +L  D F+
Sbjct: 225 CVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKT--DLIRDSFV 282

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            S+L++MYGKCGL++ ++Q+FN   +R +       + W +++ V+ ++G+ +E I+ ++
Sbjct: 283 GSTLVDMYGKCGLISLSMQLFNEIEYRTD-------IAWNAVINVFAQHGHGREAIQAFD 335

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M+ +G +P+ +AFV++++ACSH G V  G++YF  M   + +EP  EHYSC++D   RA
Sbjct: 336 RMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRA 395

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G LD+A+K I+EM  + +       W +LL AC   G  ELG++AAQ  ++L+P N GI+
Sbjct: 396 GRLDEAYKFISEMPIKPNAYG----WCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIH 451

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           V LS +YA    W+++  +R+LM++  +KK  G SW++
Sbjct: 452 VSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVD 489



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 14/247 (5%)

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G+ + +FV S L D+Y+K  L+ +A  +FD++P K++V   A++ GY +       +   
Sbjct: 71  GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 130

Query: 176 RLMPALGL-DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
           R M   GL   D     ++L A  GL      + +H  + +    L  +V ++++LI+MY
Sbjct: 131 RDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFEL--EVAVRNALIDMY 188

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            K   V  A +V  +      G  N  VV  TSM+  Y      +E + +Y  +   G +
Sbjct: 189 AKSMDVESASRVLKID----PGGWN--VVSGTSMIDGYIETDCVEEALVIYVELRRQGVE 242

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKA 352
           P+E  F ++I  C+    ++ G +    ++   K +   + +  S LVD+  + G +  +
Sbjct: 243 PNEFTFSSMIKGCAMQALLEQGAQLHAQVI---KTDLIRDSFVGSTLVDMYGKCGLISLS 299

Query: 353 WKLINEM 359
            +L NE+
Sbjct: 300 MQLFNEI 306



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 10/161 (6%)

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +P +N+V    L+SG  +  + A  L     M   G+    F LS+  RA A L A   G
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
            Q+H   +R       ++F+ S+L +MY KCGL+++A +VF+           KD V WT
Sbjct: 61  AQLHCVGVR--LGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQ-------KDAVAWT 111

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISA 306
           +M+  Y +NG  +  +  +  M   G    D+  F +V+SA
Sbjct: 112 AMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA 152


>gi|242082860|ref|XP_002441855.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
 gi|241942548|gb|EES15693.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
          Length = 501

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 233/421 (55%), Gaps = 16/421 (3%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           LM  YT C        + + + F   R+ + +N +I+ +  +G  L ALK FS MH  G 
Sbjct: 97  LMNLYTKCGRNDCARDVFDAMSF---RSIVSWNTMIAGYTCHGDGLQALKLFSKMHQEGT 153

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
            +  + L S+L A  +       +Q+     K    S+ FVG+A +D+YAK  +I+DA L
Sbjct: 154 RMSEFTLSSTLCACAAENATTECRQLHTIAIKLALDSNSFVGTAFLDVYAKCNMINDACL 213

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F++IP K +V  + L +G  +  L    L L +     G+    FTLSA+L  CA L+ 
Sbjct: 214 VFEKIPEKTAVTWSTLFAGLVQNGLHKDALRLFQSSQREGIQLTEFTLSAILSTCASLAL 273

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              GRQ+HA +I+   N   ++F+ SSL+++Y +CG + +A  VF    H       K+V
Sbjct: 274 MIEGRQLHAVIIKYGFN--GNLFVASSLVDVYARCGQIEEAYLVFADMKH-------KNV 324

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           VLW +M+  + R+G   E + L+E M  +G  P+EV +V+++S C H G V+    YF  
Sbjct: 325 VLWNAMIASFTRHGKSWEAMILFEKMQQSGISPNEVTYVSMMSMCGHAGLVEEARSYFGL 384

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           ++ D  +EP   HYSC+VD+L R+G+ D+AW+LI +M        + SMWG+LL +CH  
Sbjct: 385 LISDQTVEPNVLHYSCMVDVLARSGKTDEAWELIQQM----PFEPTPSMWGSLLGSCHKY 440

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
               + +LAA++  +L+P N G + +LS++YA    W+     R+ + + G +KD G SW
Sbjct: 441 MNVGIARLAAEQLFKLEPENGGNHALLSDVYAASGSWENAVLARKHLNDTGARKDTGSSW 500

Query: 443 I 443
           +
Sbjct: 501 V 501



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 150/352 (42%), Gaps = 17/352 (4%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           FC   +   A K  S +      +D +AL   L      +    GK         G  + 
Sbjct: 31  FCNKLNHGIAPKDRSLIRFDRNLIDMFALHELLQQCAKRRSLLVGKGCHGLAIHLGLATD 90

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
               + L++LY K      A  +FD +  ++ V  N +++GY         L+L   M  
Sbjct: 91  TITCNILMNLYTKCGRNDCARDVFDAMSFRSIVSWNTMIAGYTCHGDGLQALKLFSKMHQ 150

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G     FTLS+ L ACA  +A    RQ+H   I+    L ++ F+ ++ +++Y KC ++
Sbjct: 151 EGTRMSEFTLSSTLCACAAENATTECRQLHTIAIKLA--LDSNSFVGTAFLDVYAKCNMI 208

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A  VF       E    K  V W+++     +NG  K+ ++L+++    G +  E   
Sbjct: 209 NDACLVF-------EKIPEKTAVTWSTLFAGLVQNGLHKDALRLFQSSQREGIQLTEFTL 261

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
             ++S C+    +  G +    ++  Y         S LVD+  R G++++A+ +  +M 
Sbjct: 262 SAILSTCASLALMIEGRQLHAVII-KYGFNGNLFVASSLVDVYARCGQIEEAYLVFADMK 320

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVGIYVMLS 410
            +     +V +W A++++    GK     +  +K  +  + P+ V    M+S
Sbjct: 321 HK-----NVVLWNAMIASFTRHGKSWEAMILFEKMQQSGISPNEVTYVSMMS 367


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 146/451 (32%), Positives = 256/451 (56%), Gaps = 22/451 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA+  ++  +L  +I+  + +++ Y+ C    ++GT       +  R+ + +N ++S 
Sbjct: 343 QLHAYILKSSTILQVVIL--NAIIVMYSRC---GSIGTSFKVFSNMLERDVVTWNTMVSA 397

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F +NG     L     M   G  +D+  L + L+ +++++    GKQ  A++ + G +  
Sbjct: 398 FVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG-IQF 456

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGYCEAKLWAGGLELVRLM 178
             +   LID+YAK  LI  A+ +F++     ++    NA+++GY +  L   G  + R M
Sbjct: 457 EGMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKM 516

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
               +  +  TL+++L AC  +     G+Q+H + IR  C L  +VF+ ++L++MY K G
Sbjct: 517 IEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIR--CFLNQNVFVGTALLDMYSKSG 574

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +T A  VF      LE    K+ V +T+M+  YG++G  +  + L+ AML +G KPD V
Sbjct: 575 AITYAENVF---AETLE----KNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSV 627

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            FV ++SACS+ G V  G+  F+ M  +YK++P  EHY C+ D+L R G + +A++ +  
Sbjct: 628 TFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKG 687

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN--VGIYVMLSNLYAKF 416
           + + G+   +  +WG+LL AC   G+FELGK+ A K LE++  +   G +V+LSN+YA  
Sbjct: 688 LGEEGN---TFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAE 744

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             WD + ++R+ M++KGL K+ GCSW+EV G
Sbjct: 745 GNWDNVDRVRKEMRQKGLMKEAGCSWVEVAG 775



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 171/364 (46%), Gaps = 15/364 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           RN   +N +I  + +N  P+ A+  F   M      LD     S+LTA + ++    G+Q
Sbjct: 284 RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQ 343

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + A++ KS  +  V + +A+I +Y++   I  +  +F  +  ++ V  N ++S + +  L
Sbjct: 344 LHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGL 403

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              GL LV  M   G   D  TL+ALL   + L + E G+Q HAY+IR          M 
Sbjct: 404 DDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEG---MD 460

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
             LI+MY K GL+T A Q+F           ++D   W +M+  Y +NG  +E   ++  
Sbjct: 461 GYLIDMYAKSGLITTAQQLF-----EKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRK 515

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M+    +P+ V   +++ AC+  G + LG +   + +  + L       + L+D+  ++G
Sbjct: 516 MIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCF-LNQNVFVGTALLDMYSKSG 574

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLS-ACHDCGKFELGKLAAQKALELDPHNVGIY 406
            +  A  +  E L++    +SV+    +LS   H  G+  L    A     + P +V   
Sbjct: 575 AITYAENVFAETLEK----NSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFV 630

Query: 407 VMLS 410
            +LS
Sbjct: 631 AILS 634



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 157/351 (44%), Gaps = 40/351 (11%)

Query: 51  PLP----FNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFG 105
           P P    +N +I  F  N  P+ AL  ++ M        D+Y   S+L A    +  + G
Sbjct: 64  PRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLG 123

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLL----------IHDAEL---MFDEIPVKNS 152
           K +  HV +S + SS  V ++L+++Y+  L            ++ +L   +FD +  +N 
Sbjct: 124 KALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNV 183

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  N ++S Y + +      ++ R M  +G+     +   +  A   ++  +    ++  
Sbjct: 184 VAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNANVLYGL 243

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           +++   +  +D F+ SS I MY + G V  A ++F+         + ++  +W +M+G Y
Sbjct: 244 VVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCC-------LERNTEVWNTMIGGY 296

Query: 273 GRNGYFKEVIKLY-EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
            +N    E I L+ + M       D+V F++ ++A S    + LG +     +H Y L+ 
Sbjct: 297 VQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQ-----LHAYILKS 351

Query: 332 GP----EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
                    + ++ +  R G +  ++K+ + ML+R      V  W  ++SA
Sbjct: 352 STILQVVILNAIIVMYSRCGSIGTSFKVFSNMLER-----DVVTWNTMVSA 397



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 9/176 (5%)

Query: 138 HDAELMFDEIPVKNSVCANALLSGY-CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           H A  +FD IP   +V  N ++ G+ C        L   R+  +    +D +T S+ L+A
Sbjct: 54  HQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKA 113

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV---FN---LA 250
           CA   + + G+ +H +++R   + G+   + +SL+ MY  C      L     FN   L 
Sbjct: 114 CAQARSLKLGKALHCHVLRS--HFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLV 171

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
               +    ++VV W +M+  Y +     E  K++  M+  G +P  V+FV V  A
Sbjct: 172 RRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 141/390 (36%), Positives = 224/390 (57%), Gaps = 18/390 (4%)

Query: 57  VISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
           +IS   RN     AL+ F S    HG+  D +   + LTA  ++   + GK+V A V  +
Sbjct: 292 IISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITT 351

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G+  +V V S+L+D+Y K   + +++ +FD +P+KNSV  +ALL GYC+   +   +++ 
Sbjct: 352 GFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIF 411

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           R M  +    D +    +LR CAGL+A   G++VH   IRK      DV ++S+L+++Y 
Sbjct: 412 RKMEKV----DLYCFGTILRTCAGLAAVRQGKEVHCQYIRK--GGWRDVIVESALVDLYA 465

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG +  A  +F+    R       +++ W SM+G + +NG  +E ++++  M+  G KP
Sbjct: 466 KCGCIEYAQTIFDQMPVR-------NLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKP 518

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           D ++F+ ++ ACSH G V  G EYF  M  DY ++ G EHYSC+VDLL RAG L++A  L
Sbjct: 519 DYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEIL 578

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
           I     R       S+W ALL AC  C  +E+ +  A++ +EL+P     YV+L+N+Y  
Sbjct: 579 IETSDFR----DDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKA 634

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              W++  ++R LMK++G+ K  G SWIE 
Sbjct: 635 VGRWNDALRIRRLMKDRGVNKMPGKSWIET 664



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 172/346 (49%), Gaps = 34/346 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +IS + R G P+ +L+ F  M  +G+  + + L + + A + + D + G+  
Sbjct: 183 KDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIF 242

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V   G+ S+  + SALID++ +   + DA  +FDE+   +++C  +++S       +
Sbjct: 243 HGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFF 302

Query: 169 AGGLELVRLMPALGLDY----DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
               E +R   ++  D+    D FT   +L AC  L   + G++VHA +I        +V
Sbjct: 303 D---EALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVI--TTGFCGNV 357

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            ++SSL++MYGKCG V ++ ++F+    R+     K+ V W+++LG Y +NG FK VI++
Sbjct: 358 VVESSLVDMYGKCGSVGESQRIFD----RMP---IKNSVSWSALLGGYCQNGDFKSVIQI 410

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLV 340
           +  M     K D   F T++  C+    V+ G E     VH   +  G        S LV
Sbjct: 411 FRKM----EKVDLYCFGTILRTCAGLAAVRQGKE-----VHCQYIRKGGWRDVIVESALV 461

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           DL  + G ++ A  + ++M  R     ++  W +++      G+ E
Sbjct: 462 DLYAKCGCIEYAQTIFDQMPVR-----NLITWNSMIGGFAQNGRGE 502



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 165/343 (48%), Gaps = 26/343 (7%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N  PF+ ++   C++G    AL+    +    I        S L   T V     G Q+ 
Sbjct: 83  NTNPFSKILQ-LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIH 141

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKL-LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           AHV KSG     FVG++L+ LY KL     +   +FD + VK+ +   +++SGY      
Sbjct: 142 AHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKP 201

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL   M A G++ + FTLSA+++AC+ L   + GR  H  ++ +     ++  + S
Sbjct: 202 MNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGR--GFDSNYVIAS 259

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+M+G+   +  A Q+F+         +  D + WTS++    RN +F E ++ + +M
Sbjct: 260 ALIDMHGRNCALDDARQLFDEL-------LEPDAICWTSIISALTRNDFFDEALRFFYSM 312

Query: 289 LMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLL 343
             + G  PD   F TV++AC + G++K G E     VH   +  G        S LVD+ 
Sbjct: 313 QRDHGMCPDGFTFGTVLTACGNLGRLKQGKE-----VHAKVITTGFCGNVVVESSLVDMY 367

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            + G + ++ ++     DR    +SVS W ALL      G F+
Sbjct: 368 GKCGSVGESQRI----FDRMPIKNSVS-WSALLGGYCQNGDFK 405


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/398 (34%), Positives = 235/398 (59%), Gaps = 15/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQ 107
           ++ + +  +I  + +NGS   A+ +F  M   G+   D +  CS L+AS  +KD    K 
Sbjct: 335 KDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKS 394

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAK 166
           +   VTK+G+   V V +ALID+YAK + +  A  +    P   N V   +++ GY E  
Sbjct: 395 IHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETD 454

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L +   +   G++ + FT S++++ CA  +  E G Q+HA +I+   +L  D F+
Sbjct: 455 CVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKT--DLIRDSFV 512

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            S+L++MYGKCGL++ ++Q+FN      E E   D+  W +++ V+ ++G+ +E I+ ++
Sbjct: 513 GSTLVDMYGKCGLISLSMQLFN------EIEYRTDIA-WNAVINVFAQHGHGREAIQAFD 565

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M+ +G +P+ +AFV++++ACSH G V  G++YF  M   + +EP  EHYSC++D   RA
Sbjct: 566 RMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRA 625

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G LD+A+K I+EM  + +       W +LL AC   G  ELG++AAQ  ++L+P N GI+
Sbjct: 626 GRLDEAYKFISEMPIKPNAYG----WCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIH 681

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           V LS +YA    W+++  +R+LM++  +KK  G SW++
Sbjct: 682 VSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVD 719



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 14/247 (5%)

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G+ + +FV S L D+Y+K  L+ +A  +FD++P K++V   A++ GY +       +   
Sbjct: 301 GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 360

Query: 176 RLMPALGL-DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
           R M   GL   D     ++L A  GL      + +H  + +    L  +V ++++LI+MY
Sbjct: 361 RDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFEL--EVAVRNALIDMY 418

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            K   V  A +V  +      G  N  VV  TSM+  Y      +E + +Y  +   G +
Sbjct: 419 AKSMDVESASRVLKID----PGGWN--VVSGTSMIDGYIETDCVEEALVIYVELRRQGVE 472

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKA 352
           P+E  F ++I  C+    ++ G +    ++   K +   + +  S LVD+  + G +  +
Sbjct: 473 PNEFTFSSMIKGCAMQALLEQGAQLHAQVI---KTDLIRDSFVGSTLVDMYGKCGLISLS 529

Query: 353 WKLINEM 359
            +L NE+
Sbjct: 530 MQLFNEI 536



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 12/223 (5%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMF 144
           T  L S L +     D R G+ + A +  SG   +S F+ + LI +Y+    +  A  +F
Sbjct: 170 TVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLF 229

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
             +P +N+V    L+SG  +  + A  L     M   G+    F LS+  RA A L A  
Sbjct: 230 AAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPL 289

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
             R   A           ++F+ S+L +MY KCGL+++A +VF+           KD V 
Sbjct: 290 RARSCTA---SASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMP-------QKDAVA 339

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISA 306
           WT+M+  Y +NG  +  +  +  M   G    D+  F +V+SA
Sbjct: 340 WTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA 382


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 136/398 (34%), Positives = 235/398 (59%), Gaps = 15/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQ 107
           ++ + +  +I  + +NGS   A+ +F  M   G+   D +  CS L+AS  +KD    K 
Sbjct: 186 KDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKS 245

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAK 166
           +   VTK+G+   V V +ALID+YAK + +  A  +    P   N V   +++ GY E  
Sbjct: 246 IHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETD 305

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L +   +   G++ + FT S++++ CA  +  E G Q+HA +I+   +L  D F+
Sbjct: 306 CVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKT--DLIRDSFV 363

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            S+L++MYGKCGL++ ++Q+FN   +R +       + W +++ V+ ++G+ +E I+ ++
Sbjct: 364 GSTLVDMYGKCGLISLSMQLFNEIEYRTD-------IAWNAVINVFAQHGHGREAIQAFD 416

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M+ +G +P+ +AFV++++ACSH G V  G++YF  M   + +EP  EHYSC++D   RA
Sbjct: 417 RMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRA 476

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G LD+A+K I+EM  + +       W +LL AC   G  ELG++AAQ  ++L+P N GI+
Sbjct: 477 GRLDEAYKFISEMPIKPNAYG----WCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIH 532

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           V LS +YA    W+++  +R+LM++  +KK  G SW++
Sbjct: 533 VSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVD 570



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 153/335 (45%), Gaps = 14/335 (4%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY 87
           T   H  +L +       +  RN + +  ++S   +N     AL  F+ M   G+    +
Sbjct: 64  TMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRF 123

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           AL S+  A+ ++     G Q+     + G+ + +FV S L D+Y+K  L+ +A  +FD++
Sbjct: 124 ALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQM 183

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL-DYDHFTLSALLRACAGLSAAEFG 206
           P K++V   A++ GY +       +   R M   GL   D     ++L A  GL      
Sbjct: 184 PQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLS 243

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           + +H  + +    L  +V ++++LI+MY K   V  A +V  +      G  N  VV  T
Sbjct: 244 KSIHCCVTKAGFEL--EVAVRNALIDMYAKSMDVESASRVLKID----PGGWN--VVSGT 295

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           SM+  Y      +E + +Y  +   G +P+E  F ++I  C+    ++ G +    ++  
Sbjct: 296 SMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVI-- 353

Query: 327 YKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEM 359
            K +   + +  S LVD+  + G +  + +L NE+
Sbjct: 354 -KTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEI 387



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 11/223 (4%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMF 144
           T  L S L +     D R G+ + A +  SG   +S F+ + LI +Y+    +  A  +F
Sbjct: 20  TVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLF 79

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
             +P +N+V    L+SG  +  + A  L     M   G+    F LS+  RA A L A  
Sbjct: 80  AAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPL 139

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G Q+H   +R       ++F+ S+L +MY KCGL+++A +VF+           KD V 
Sbjct: 140 PGAQLHCVGVR--LGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQ-------KDAVA 190

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISA 306
           WT+M+  Y +NG  +  +  +  M   G    D+  F +V+SA
Sbjct: 191 WTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA 233


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 141/390 (36%), Positives = 224/390 (57%), Gaps = 18/390 (4%)

Query: 57  VISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
           +IS   RN     AL+ F S    HG+  D +   + LTA  ++   + GK+V A V  +
Sbjct: 233 IISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITT 292

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G+  +V V S+L+D+Y K   + +++ +FD +P+KNSV  +ALL GYC+   +   +++ 
Sbjct: 293 GFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIF 352

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           R M  +    D +    +LR CAGL+A   G++VH   IRK      DV ++S+L+++Y 
Sbjct: 353 RKMEKV----DLYCFGTILRTCAGLAAVRQGKEVHCQYIRK--GGWRDVIVESALVDLYA 406

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG +  A  +F+    R       +++ W SM+G + +NG  +E ++++  M+  G KP
Sbjct: 407 KCGCIEYAQTIFDQMPVR-------NLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKP 459

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           D ++F+ ++ ACSH G V  G EYF  M  DY ++ G EHYSC+VDLL RAG L++A  L
Sbjct: 460 DYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEIL 519

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
           I     R       S+W ALL AC  C  +E+ +  A++ +EL+P     YV+L+N+Y  
Sbjct: 520 IETSDFR----DDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKA 575

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              W++  ++R LMK++G+ K  G SWIE 
Sbjct: 576 VGRWNDALRIRRLMKDRGVNKMPGKSWIET 605



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 172/346 (49%), Gaps = 34/346 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +IS + R G P+ +L+ F  M  +G+  + + L + + A + + D + G+  
Sbjct: 124 KDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIF 183

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V   G+ S+  + SALID++ +   + DA  +FDE+   +++C  +++S       +
Sbjct: 184 HGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFF 243

Query: 169 AGGLELVRLMPALGLDY----DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
               E +R   ++  D+    D FT   +L AC  L   + G++VHA +I        +V
Sbjct: 244 D---EALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVI--TTGFCGNV 298

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            ++SSL++MYGKCG V ++ ++F+    R+     K+ V W+++LG Y +NG FK VI++
Sbjct: 299 VVESSLVDMYGKCGSVGESQRIFD----RMP---IKNSVSWSALLGGYCQNGDFKSVIQI 351

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLV 340
           +  M     K D   F T++  C+    V+ G E     VH   +  G        S LV
Sbjct: 352 FRKM----EKVDLYCFGTILRTCAGLAAVRQGKE-----VHCQYIRKGGWRDVIVESALV 402

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           DL  + G ++ A  + ++M  R     ++  W +++      G+ E
Sbjct: 403 DLYAKCGCIEYAQTIFDQMPVR-----NLITWNSMIGGFAQNGRGE 443



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 165/343 (48%), Gaps = 26/343 (7%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N  PF+ ++   C++G    AL+    +    I        S L   T V     G Q+ 
Sbjct: 24  NTNPFSKILQ-LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIH 82

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKL-LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           AHV KSG     FVG++L+ LY KL     +   +FD + VK+ +   +++SGY      
Sbjct: 83  AHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKP 142

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL   M A G++ + FTLSA+++AC+ L   + GR  H  ++ +     ++  + S
Sbjct: 143 MNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGR--GFDSNYVIAS 200

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+M+G+   +  A Q+F+         +  D + WTS++    RN +F E ++ + +M
Sbjct: 201 ALIDMHGRNCALDDARQLFDEL-------LEPDAICWTSIISALTRNDFFDEALRFFYSM 253

Query: 289 LMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLL 343
             + G  PD   F TV++AC + G++K G E     VH   +  G        S LVD+ 
Sbjct: 254 QRDHGMCPDGFTFGTVLTACGNLGRLKQGKE-----VHAKVITTGFCGNVVVESSLVDMY 308

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            + G + ++ ++     DR    +SVS W ALL      G F+
Sbjct: 309 GKCGSVGESQRI----FDRMPIKNSVS-WSALLGGYCQNGDFK 346


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 139/400 (34%), Positives = 225/400 (56%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I  F RN S L A+  F  M   G+  +   + S L A+   +D RFG+ +
Sbjct: 167 KDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSI 226

Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
                ++G +   VF+GS+L+D+Y K     DA+ +FDE+P +N V   AL++GY + + 
Sbjct: 227 HGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRC 286

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +  G+ +   M    +  +  TLS++L ACA + A   GR+VH Y+I+    +   V   
Sbjct: 287 FEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTV--G 344

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+ Y KCG + +A+ VF     RL     K+V  WT+M+  +  +GY    + L+  
Sbjct: 345 TTLIDFYAKCGCLEEAILVFE----RLR---EKNVYTWTAMINGFAAHGYAIGAVDLFHT 397

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           ML +   P+EV F+ V+SAC+H G V+ G   F  M   + LEP  +HY+C+VDL  R G
Sbjct: 398 MLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKG 457

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L++A  LI  M        + ++WGAL  +C     +ELGK AA + ++L P + G Y 
Sbjct: 458 LLEEAKALIERM----PMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYT 513

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +L+NLY++   WD++ ++R+ MK++ + K  GCSWIEV G
Sbjct: 514 LLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVKG 553



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 157/340 (46%), Gaps = 17/340 (5%)

Query: 73  TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
           ++  M  +G+    +     L A   ++DA    Q  AH+ K G+ S +FV ++LI  Y+
Sbjct: 91  SYRQMRRNGVVPSRHTFPPLLKAVFKLRDAN-PFQFHAHILKFGFDSDLFVRNSLISGYS 149

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
              L      +FD    K+ V   A++ G+         +     M   G+  +  T+ +
Sbjct: 150 NCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVS 209

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L+A        FGR +H + + +   +  DVF+ SSL++MYGKCG    A +VF+    
Sbjct: 210 VLKATRKAEDVRFGRSIHGFYL-EAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPS 268

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
           R       +VV WT+++  Y +   F++ + ++E ML +   P+E    +V+SAC+H G 
Sbjct: 269 R-------NVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           +  G     +++ +  +E      + L+D   + G L++A  +   + ++     +V  W
Sbjct: 322 LHRGRRVHCYVIKN-SIEINTTVGTTLIDFYAKCGCLEEAILVFERLREK-----NVYTW 375

Query: 373 GALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            A+++  A H      +       +  + P+ V   V+LS
Sbjct: 376 TAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLS 415


>gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 145/447 (32%), Positives = 254/447 (56%), Gaps = 20/447 (4%)

Query: 5   HQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRN 64
           H F    L   LII  + +M+ Y+ C H   + T       +  R+ + +N +IS F +N
Sbjct: 348 HAFVIKSLPGSLIIILNAVMVMYSRCNH---VDTSLKVFDKMLERDAVSWNTIISAFVQN 404

Query: 65  GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG 124
           G    AL     M      +D+    + L+A++++++   GKQ  A++ + G +    + 
Sbjct: 405 GFDEEALMLVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRG-IQFEGME 463

Query: 125 SALIDLYAKLLLIHDAELMFDE--IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           S LID+YAK   I  AEL+F++     ++    NA+++GY +  L    + L++ M    
Sbjct: 464 SYLIDMYAKSGSIRTAELLFEQNCSSDRDQATWNAIIAGYTQNGLNEKAILLLKQMLVQN 523

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  +  TL+++L AC+ + +    RQ+H + IR+   L  +V++ +SL + Y KCG ++ 
Sbjct: 524 VIPNAVTLASILPACSSMGSMGLARQLHGFSIRRF--LEKNVYVGTSLTDTYSKCGAISY 581

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A  VF            K+ V +T+M+  YG++G  K  + LY++ML +G +PD V FV 
Sbjct: 582 AENVFLRTPE-------KNSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVA 634

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           ++SAC+++G V  G++ FE M   +K++P  EHY C+ D+L R G + +A++ +  +   
Sbjct: 635 ILSACNYSGLVDEGLQIFESMEKVHKIKPSIEHYCCVADMLGRVGRVVEAYEFVKGL--- 691

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVGIYVMLSNLYAKFCMWD 420
           G  ++++ +WG+LL +C + G FELGK  A+K L   +D    G +V+LSN+YA+   W+
Sbjct: 692 GEDANTMEIWGSLLGSCRNHGHFELGKAVAKKLLNMGMDKRMAGYHVLLSNIYAEEGEWE 751

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVTG 447
           ++ ++R+ MKEKGL K+ GCSW+E+ G
Sbjct: 752 KVDRVRKQMKEKGLHKETGCSWVEIAG 778



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 142/306 (46%), Gaps = 12/306 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF--SFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +N   +N +I  + +N  P+ A+  F  +     G+  D   L S LTA + ++  +  +
Sbjct: 287 KNTEIWNTMIVAYVQNNCPVEAIDVFIQALESEEGV-CDDVTLLSVLTAVSQLQQIKLAE 345

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q  A V KS   S + + +A++ +Y++   +  +  +FD++  +++V  N ++S + +  
Sbjct: 346 QFHAFVIKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNG 405

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L LV  M       D  T +ALL A + L     G+Q HAY+IR+         M
Sbjct: 406 FDEEALMLVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQFEG---M 462

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           +S LI+MY K G +  A  +F           ++D   W +++  Y +NG  ++ I L +
Sbjct: 463 ESYLIDMYAKSGSIRTAELLF-----EQNCSSDRDQATWNAIIAGYTQNGLNEKAILLLK 517

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML+    P+ V   +++ ACS  G + L  +   + +  + LE      + L D   + 
Sbjct: 518 QMLVQNVIPNAVTLASILPACSSMGSMGLARQLHGFSIRRF-LEKNVYVGTSLTDTYSKC 576

Query: 347 GELDKA 352
           G +  A
Sbjct: 577 GAISYA 582



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 173/387 (44%), Gaps = 30/387 (7%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I++ S L + Y +C+H+  L    N    +  RN + +N +I  F +      A++ F+ 
Sbjct: 157 IVYNSLLNM-YASCQHEYAL----NVFDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFAN 211

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG--WLSSVFVGSALIDLYAKL 134
           M    +        +   A + + D+R  K     + K G  ++S VFV S+ I +++ +
Sbjct: 212 MINQSVMPSPVTFVNLFPALSKLGDSRTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDV 271

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY---DHFTLS 191
             +  A ++FD    KN+   N ++  Y +       +++   + AL  +    D  TL 
Sbjct: 272 GCMDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEAIDV--FIQALESEEGVCDDVTLL 329

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           ++L A + L   +   Q HA++I+     G+ + + ++++ MY +C  V  +L+VF    
Sbjct: 330 SVLTAVSQLQQIKLAEQFHAFVIKSLP--GSLIIILNAVMVMYSRCNHVDTSLKVF---- 383

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
              +  + +D V W +++  + +NG+ +E + L   M       D V    ++SA S+  
Sbjct: 384 ---DKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAASNLR 440

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE--MLDRGHGSSSV 369
            + +G +   +++       G E Y  L+D+  ++G +  A  L  +    DR   +   
Sbjct: 441 NLYVGKQTHAYLIRRGIQFEGMESY--LIDMYAKSGSIRTAELLFEQNCSSDRDQAT--- 495

Query: 370 SMWGALLSACHDCGKFELGKLAAQKAL 396
             W A+++     G  E   L  ++ L
Sbjct: 496 --WNAIIAGYTQNGLNEKAILLLKQML 520



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 152/342 (44%), Gaps = 28/342 (8%)

Query: 48  PR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI--FLDTYALCSSLTASTSVKDARF 104
           PR + + +N VI  F  N  P  AL  ++ M  +      D Y   S+L A    KD   
Sbjct: 76  PRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTFSSTLKACALTKDILT 135

Query: 105 GKQVQAHVTKS----GWLSSVFVGSALIDLYAKLLLIHDAEL-MFDEIPVKNSVCANALL 159
           GK + +H  +S        S  V ++L+++YA     H+  L +FD +  +N V  N L+
Sbjct: 136 GKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASCQ--HEYALNVFDVMRRRNVVAWNTLI 193

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
             + +   +   +E    M    +     T   L  A + L  +   +  + +M +    
Sbjct: 194 LSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDSRTVKMFYGFMRKFGDQ 253

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
             +DVF+ SS I M+   G +  A  VF+         +NK+  +W +M+  Y +N    
Sbjct: 254 YVSDVFVVSSAILMFSDVGCMDYARMVFDRC-------LNKNTEIWNTMIVAYVQNNCPV 306

Query: 280 EVIKLY-EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-- 336
           E I ++ +A+       D+V  ++V++A S   Q+KL  ++  +++   K  PG      
Sbjct: 307 EAIDVFIQALESEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFVI---KSLPGSLIIIL 363

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + ++ +  R   +D + K+ ++ML+R   S     W  ++SA
Sbjct: 364 NAVMVMYSRCNHVDTSLKVFDKMLERDAVS-----WNTIISA 400



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 12/190 (6%)

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL--DYDHFTLSALLR 195
           H A  + D +P  ++V  N+++ G+    L    L L   M +      +D +T S+ L+
Sbjct: 66  HLALHLLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTFSSTLK 125

Query: 196 ACAGLSAAEFGRQVHAYMIR--KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           ACA       G+ +H++ +R     N G    + +SL+ MY  C     AL VF++   R
Sbjct: 126 ACALTKDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASCQH-EYALNVFDVMRRR 184

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  +VV W +++  + +   + + ++ +  M+     P  V FV +  A S  G  
Sbjct: 185 -------NVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDS 237

Query: 314 KLGIEYFEWM 323
           +    ++ +M
Sbjct: 238 RTVKMFYGFM 247


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 242/446 (54%), Gaps = 20/446 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTN-CLKFLNPRNPLPFNVVISD 60
           +H +    G++L   +   S L+  Y  CR       + N   KF    + + +  +IS 
Sbjct: 234 IHGYIVRHGVILD--VYLNSALIDLYFKCRDAVMACKMFNLSTKF----DIVIYTAMISG 287

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           +  NG    AL+ F ++    +  +     S L A   +   + G+++  ++ K+     
Sbjct: 288 YVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEK 347

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
             VGSA++++YAK   +  A L+F  I +K+++C N++++ + +       + L R M  
Sbjct: 348 CPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGM 407

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+ YD  T+SA L ACA + A  +G+++H +MI+      +D+F  S+LI MY KCG +
Sbjct: 408 EGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGA--FESDLFDMSALINMYAKCGKL 465

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A  VFNL   + E       V W S++  YG +GY  + + L+  ML  G +PD + F
Sbjct: 466 NIARLVFNLMQEKNE-------VAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITF 518

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           +T++S+C H GQV+ G+ YF  M  +Y +    EHY+C+ DL  RAG LD+A+++I  M 
Sbjct: 519 LTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSM- 577

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
                  + S+WG LL AC   G  EL ++A++  L+L+P N G Y++L+++ A    W 
Sbjct: 578 ---PFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWR 634

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVT 446
            + +++ LMKE+G++K  GCSWIEV 
Sbjct: 635 SVHKIQHLMKERGVQKVPGCSWIEVN 660



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 149/299 (49%), Gaps = 10/299 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +NV+I+ + + G    A+K F  M       D+      L+ S S     +G+Q+   V 
Sbjct: 79  WNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVV 138

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           +SG      VG+ L+ +Y+K   + DA  +FD +P  + V  N ++ GY +         
Sbjct: 139 RSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASM 198

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M + G+  D  T ++ L + A  S+ +  +++H Y++R    L  DV++ S+LI++
Sbjct: 199 LFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVIL--DVYLNSALIDL 256

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KC     A ++FNL+          D+V++T+M+  Y  NG  K+ ++++  +L    
Sbjct: 257 YFKCRDAVMACKMFNLS-------TKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKM 309

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            P+ + F +++ AC+    +KLG E   +++ +   E  P   S ++++  + G LD A
Sbjct: 310 IPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVG-SAIMNMYAKCGRLDLA 367



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 133/281 (47%), Gaps = 18/281 (6%)

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G+F D Y     +   T + + R GK +Q  + + G+   +FV S+LI LYA    I DA
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
              FD++  K+ V  N +++GY +       ++L + M +     D  T + +L      
Sbjct: 65  RRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSE 124

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
           +  E+GRQ+H  ++R    L     + ++L+ +Y K   +  A ++F++           
Sbjct: 125 AMVEYGRQLHGLVVRS--GLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQ-------I 175

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           D+V+W  M+G Y +NG+  +   L+  M+  G KPD + F + + + + +  +K   E  
Sbjct: 176 DLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKE-- 233

Query: 321 EWMVHDYKLEPGP--EHY--SCLVDLLCRAGELDKAWKLIN 357
              +H Y +  G   + Y  S L+DL  +  +   A K+ N
Sbjct: 234 ---IHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFN 271



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 10/182 (5%)

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  D +T   +++ C GL+    G+ +   ++    +L  D+F+ SSLI++Y   
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDL--DMFVASSLIKLYADN 58

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G +  A + F       +  I+KD VLW  M+  Y + G     IKL++ M+ +  KPD 
Sbjct: 59  GCIEDARRFF-------DKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDS 111

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           V F  V+S       V+ G +    +V    L+  P   + LV +  +  +L  A KL +
Sbjct: 112 VTFACVLSISCSEAMVEYGRQLHGLVVRS-GLDFVPLVGNTLVTVYSKGRQLGDARKLFD 170

Query: 358 EM 359
            M
Sbjct: 171 MM 172


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 220/397 (55%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+P+ +N +I+   +N S    L  F  M    +  D +   S L A    +    G +V
Sbjct: 423 RDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEV 482

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + KSG    +FVGSAL+D+Y+K  ++ +AE +   +  +  V  NA++SG+   K  
Sbjct: 483 HGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKS 542

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                    M  +G++ D+FT + +L  CA L+    G+Q+HA MI+    L +DV++ S
Sbjct: 543 EDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIK--LELLSDVYITS 600

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  +L +F  A  R       D V W +M+  +  +G  +E ++L+E M
Sbjct: 601 TLVDMYSKCGNMHDSLLMFRKAPKR-------DSVTWNAMICGFAYHGLGEEALELFEHM 653

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L    KP+   FV+V+ ACSH G  K G+ YF+ M   Y LEP  EHYSC+VD+L R+G+
Sbjct: 654 LHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQ 713

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           +++A +LI +M       +   +W  LLS C   G  E+ + AA   L+LDP +   Y +
Sbjct: 714 VEEALRLIQDM----PFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTL 769

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA   MW ++ ++R+ M+   LKK+ GCSWIEV
Sbjct: 770 LSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEV 806



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 162/333 (48%), Gaps = 25/333 (7%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +IS + +NG    ++  F  M   G+  D   L  SL   + ++D   G Q+   
Sbjct: 123 VSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGI 182

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
             + G+   V  GSAL+D+YAK   + D+  +F E+P KN +  +A ++G  +      G
Sbjct: 183 AVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRG 242

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L+L + M   G+     T +++ R+CAGLSA+  G Q+H + ++   + G+DV + ++ +
Sbjct: 243 LKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKT--DFGSDVIVGTATL 300

Query: 232 EMYGKCGLVTKALQVFN-LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           +MY KC  ++ A ++F+ L  H L+         + +M+  Y RN    +  KL+  +  
Sbjct: 301 DMYAKCDNMSDAYKLFSLLPDHNLQS--------YNAMIIGYARNEQGFQAFKLFLQLQK 352

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRA 346
           N    DEV+    +SA +       G++     +H   ++       C    ++D+  + 
Sbjct: 353 NSFSFDEVSLSGALSAAAVIKGHSEGLQ-----LHGLAIKSNLSSNICVANAILDMYGKC 407

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           G L +A  L +EM  R   S     W A+++AC
Sbjct: 408 GALVEASGLFDEMEIRDPVS-----WNAIITAC 435



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 169/365 (46%), Gaps = 26/365 (7%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++  S L+  Y  C    +L    +    L  +N + ++  I+   +N   L  LK F  
Sbjct: 192 VVTGSALVDMYAKCN---SLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKE 248

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   GI +      S   +   +  +R G Q+  H  K+ + S V VG+A +D+YAK   
Sbjct: 249 MQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDN 308

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DA  +F  +P  N    NA++ GY   +      +L   +      +D  +LS  L A
Sbjct: 309 MSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSA 368

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            A +     G Q+H   I+   NL +++ + +++++MYGKCG + +A  +F+      E 
Sbjct: 369 AAVIKGHSEGLQLHGLAIKS--NLSSNICVANAILDMYGKCGALVEASGLFD------EM 420

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           EI +D V W +++    +N    + +  + AML +  +PDE  + +V+ AC+       G
Sbjct: 421 EI-RDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNG 479

Query: 317 IEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           +E     VH   ++ G        S LVD+  + G +++A K+   + ++     ++  W
Sbjct: 480 ME-----VHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQ-----TMVSW 529

Query: 373 GALLS 377
            A++S
Sbjct: 530 NAIIS 534



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 134/291 (46%), Gaps = 15/291 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  +  + +N +IS F        + + FS M   G+  D +   + L    ++     G
Sbjct: 521 LEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLG 580

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ A + K   LS V++ S L+D+Y+K   +HD+ LMF + P ++SV  NA++ G+   
Sbjct: 581 KQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYH 640

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN---LGN 222
            L    LEL   M    +  +H T  ++LRAC+ +  A+ G     +  +K  +   L  
Sbjct: 641 GLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKG----LFYFQKMASIYALEP 696

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            +   S ++++ G+ G V +AL++        +     D ++W ++L +    G   EV 
Sbjct: 697 QLEHYSCMVDILGRSGQVEEALRLIQ------DMPFEADAIIWRTLLSICKIQGNV-EVA 749

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM-VHDYKLEPG 332
           +   + L+     D  A+  + +  +  G  +   +  + M  H+ K EPG
Sbjct: 750 EKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPG 800



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 46/291 (15%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV--------CA- 155
           GK+  AH+  SG+  +VFV + LI +Y K   +  A  +F+E+P ++ V        CA 
Sbjct: 43  GKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAG 102

Query: 156 -----------------------NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
                                  N+L+SGY +       + +   M  LG+ +DH TL+ 
Sbjct: 103 AGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAV 162

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
            L+ C+ L     G Q+H   ++       DV   S+L++MY KC  +  +L VF+    
Sbjct: 163 SLKICSLLEDQVLGIQIHGIAVQ--MGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELP- 219

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
                 +K+ + W++ +    +N      +KL++ M   G    +  + +V  +C+    
Sbjct: 220 ------DKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSA 273

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLD 361
            +LG +      H  K + G +    +  +D+  +   +  A+KL + + D
Sbjct: 274 SRLGTQLH---CHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPD 321



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 39/219 (17%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T S + + C+   A + G++ HA+MI         VF+ + LI+MY KC  +  A +VF 
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMI--LSGFTPTVFVTNCLIQMYVKCCALEYAYKVFE 83

Query: 249 LAGHR--------------------LEGEINK-----DVVLWTSMLGVYGRNGYFKEVIK 283
               R                     +   N      DVV W S++  Y +NG  ++ I 
Sbjct: 84  EMPQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIA 143

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH---DYKLEPGPEHYSCLV 340
           ++  M   G   D       +  CS      LGI+     V    DY +  G    S LV
Sbjct: 144 VFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTG----SALV 199

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           D+  +   L+ +  + +E+ D+   S     W A ++ C
Sbjct: 200 DMYAKCNSLEDSLDVFSELPDKNWIS-----WSAAIAGC 233


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  251 bits (640), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 13/392 (3%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           + +IS +  NG    A+K F ++   GI  +  A+ S L A  S+   + G+++ ++  K
Sbjct: 418 STMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALK 477

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           + +    +V SAL+D+YAK   +  +  +F +I  K+ V  N+++S + +       L L
Sbjct: 478 NAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNL 537

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M   G+ Y + T+S++L ACA L A  +G+++H  +I+    +  D+F +S+LI+MY
Sbjct: 538 FREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKG--PIRADLFAESALIDMY 595

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
           GKCG +  A +VF       E    K+ V W S++  YG  G  KE + L   M   G K
Sbjct: 596 GKCGNLEWAHRVF-------ESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFK 648

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
            D V F+ ++SAC+H GQV+ G+  F  M  +Y++ P  EH++C+VDL  RAG+LDKA +
Sbjct: 649 ADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAME 708

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
           LI +M  +        +WGALL AC      EL ++A+Q+  +LDPHN G YV++SN+ A
Sbjct: 709 LIVDMPFK----PDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINA 764

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
               WD + ++R LMK+  ++K  G SW++V 
Sbjct: 765 VAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVN 796



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 167/337 (49%), Gaps = 23/337 (6%)

Query: 46  LNPRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           L PR+ L  +N +IS   +NG    AL  F  M   GI  D+  L S L A T +     
Sbjct: 307 LMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQ 366

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK++  ++ ++     VF+ SAL+D+Y K   +  A+ ++D     + V  + ++SGY  
Sbjct: 367 GKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             +    +++ R +   G+  +   ++++L ACA ++A + G+++H+Y ++         
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYE--GRC 484

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           +++S+L++MY KCG +  +  +F+           KD V W SM+  + +NG  +E + L
Sbjct: 485 YVESALMDMYAKCGRLDLSHYIFSKIS-------AKDEVTWNSMISSFAQNGEPEEALNL 537

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-----SCL 339
           +  M M G K   V   +V+SAC+    +  G E     +H   ++ GP        S L
Sbjct: 538 FREMCMEGVKYSNVTISSVLSACASLPAIYYGKE-----IHGVVIK-GPIRADLFAESAL 591

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGS--SSVSMWGA 374
           +D+  + G L+ A ++   M ++   S  S ++ +GA
Sbjct: 592 IDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGA 628



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 158/356 (44%), Gaps = 14/356 (3%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM- 77
            Q+RL+  Y   R  ++   + + L        LP+N +I      G    AL  +  M 
Sbjct: 77  LQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMW 136

Query: 78  -HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
            H      D++     + +  ++     G+ V       G    +FVGSALI +YA   L
Sbjct: 137 AHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGL 196

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DA  +FD +  ++ V  N ++ GY +A   +  +EL   M A G + +  TL+  L  
Sbjct: 197 LWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSV 256

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            A  S   FG Q+H   ++    L ++V + ++L+ MY KC  +    ++F L       
Sbjct: 257 SATESDLFFGVQLHTLAVKY--GLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPR---- 310

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               D+V W  M+    +NG+  + + L+  M  +G +PD V  V+++ A +       G
Sbjct: 311 ---DDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQG 367

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLL--CRAGELDKAWKLINEMLDRGHGSSSVS 370
            E   ++V +  +       S LVD+   CRA  + ++    ++ +D   GS+ +S
Sbjct: 368 KELHGYIVRNC-VHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMIS 422



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 7/224 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ ++ + +N +IS F +NG P  AL  F  M + G+      + S L+A  S+    +G
Sbjct: 510 ISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG 569

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   V K    + +F  SALID+Y K   +  A  +F+ +P KN V  N++++ Y   
Sbjct: 570 KEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAY 629

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    + L+R M   G   DH T  AL+ ACA     + G ++   M  +   +   + 
Sbjct: 630 GLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEE-YQIAPRME 688

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
             + ++++Y + G + KA+++       ++     D  +W ++L
Sbjct: 689 HFACMVDLYSRAGKLDKAMELI------VDMPFKPDAGIWGALL 726


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  251 bits (640), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 137/399 (34%), Positives = 224/399 (56%), Gaps = 14/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I+ F   G     L+ F+ M   G   + Y   S L + +S+ D   GKQV
Sbjct: 255 RDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV 313

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + K+    + FVG+AL+D+YAK   + DAE +F+ +  ++      +++GY +    
Sbjct: 314 HAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQG 373

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              ++    M   G+  + FTL++ L  C+ ++  + GRQ+H+  I+       D+F+ S
Sbjct: 374 EKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIK--AGQSGDMFVAS 431

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG V  A  VF       +G +++D V W +++  Y ++G   + +K +EAM
Sbjct: 432 ALVDMYAKCGCVEDAEVVF-------DGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAM 484

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  GT PDEV F+ V+SACSH G ++ G ++F  +   Y + P  EHY+C+VD+L RAG+
Sbjct: 485 LDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGK 544

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +    I EM      +S+V +W  +L AC   G  E G+ AA K  EL+P     Y++
Sbjct: 545 FHEVESFIEEM----KLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYIL 600

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSN++A   MWD++  +R LM  +G+KK+ GCSW+EV G
Sbjct: 601 LSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNG 639



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 144/294 (48%), Gaps = 13/294 (4%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           A++ F  M    I L+ +   S ++A+ S+ D  +G+ + A V K G+ S + + +A + 
Sbjct: 74  AVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVT 133

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y K   + +    F  + ++N    N LLSG+C+ +    G  ++  +   G + + +T
Sbjct: 134 MYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYT 193

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
             ++L+ CA       G+ +H  +I+   N   D  + +SL+ +Y KCG    A +VF  
Sbjct: 194 FISILKTCASKGDLNEGKAIHGQVIKSGIN--PDSHLWNSLVNVYAKCGSANYACKVF-- 249

Query: 250 AGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                 GEI  +DVV WT+++  +   GY    ++++  ML  G  P+   F++++ +CS
Sbjct: 250 ------GEIPERDVVSWTALITGFVAEGY-GSGLRIFNQMLAEGFNPNMYTFISILRSCS 302

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
               V LG +    +V +  L+      + LVD+  +   L+ A  + N ++ R
Sbjct: 303 SLSDVDLGKQVHAQIVKN-SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKR 355



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 120/275 (43%), Gaps = 19/275 (6%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   V K+G      + S+L+++Y K   +  A  + +E+P+++    N  LS     
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--ND 223
                 ++L  LM    +  + F  ++L+ A A L    +G  +HA +    C  G  +D
Sbjct: 69  YPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACV----CKYGFESD 124

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           + + ++ + MY K   V    Q F       +  + +++    ++L  +       +  +
Sbjct: 125 ILISNAFVTMYMKTQSVENGWQFF-------KAMMIENLASRNNLLSGFCDTETCDQGPR 177

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           +   +L+ G +P+   F++++  C+  G +  G +     V    + P    ++ LV++ 
Sbjct: 178 ILIQLLVEGFEPNMYTFISILKTCASKGDLNEG-KAIHGQVIKSGINPDSHLWNSLVNVY 236

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            + G  + A K+  E+ +R      V  W AL++ 
Sbjct: 237 AKCGSANYACKVFGEIPER-----DVVSWTALITG 266


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  251 bits (640), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 139/403 (34%), Positives = 222/403 (55%), Gaps = 15/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + +  R+ + +  +++   +NG  L AL  F  M   G+ +D Y   S LTA  ++   
Sbjct: 235 FQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAAL 294

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GKQ+ A++T++ +  +VFVGSAL+D+Y+K   I  AE +F  +  +N +   A++ GY
Sbjct: 295 EEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       +     M   G+  D FTL +++ +CA L++ E G Q H   +     L  
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLAL--VSGLMR 412

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEV 281
            + + ++L+ +YGKCG +  A        HRL  E++  D V WT+++  Y + G  KE 
Sbjct: 413 YITVSNALVTLYGKCGSIEDA--------HRLFDEMSFHDQVSWTALVTGYAQFGKAKET 464

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           I L+E ML NG KPD V F+ V+SACS  G V+ G +YF+ M  D+ + P  +HY+C++D
Sbjct: 465 IDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMID 524

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           L  R+G   +A + I +M    H   +   W  LLS+C   G  E+GK AA+  LE DP 
Sbjct: 525 LYSRSGRFKEAEEFIKQM---PHSPDAFG-WATLLSSCRLRGNMEIGKWAAENLLETDPQ 580

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           N   YV+L +++A    W E+  LR  M+++ +KK+ GCSWI+
Sbjct: 581 NPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 181/389 (46%), Gaps = 55/389 (14%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALC 90
           H + +  +      +  R+ + +N +I+ F   GSP  +++ + + +    +      L 
Sbjct: 91  HSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLS 150

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           + +  ++++ D   G  V   V + G+ +  FVGS L+D+YAK+ LI DA  +F E+  K
Sbjct: 151 AMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAK 210

Query: 151 NSVCANALLSGYCEAKL------------------WAG-------------GLELVRLMP 179
             V  N L++G    K+                  W                L++ R M 
Sbjct: 211 TVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMR 270

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
           A G+  D +T  ++L AC  L+A E G+Q+HAY+ R      ++VF+ S+L++MY KC  
Sbjct: 271 AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYE--DNVFVGSALVDMYSKCRS 328

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           +  A  VF     R       +++ WT+M+  YG+N   +E ++ +  M M+G KPD+  
Sbjct: 329 IRLAEAVFRRMTCR-------NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKL 355
             +VIS+C++   ++ G ++     H   L  G   Y    + LV L  + G ++ A +L
Sbjct: 382 LGSVISSCANLASLEEGAQF-----HCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGK 384
            +EM      S     W AL++     GK
Sbjct: 437 FDEMSFHDQVS-----WTALVTGYAQFGK 460


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  250 bits (639), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 144/392 (36%), Positives = 220/392 (56%), Gaps = 13/392 (3%)

Query: 54   FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
            +N ++  + ++     AL+ FS MH  GI +D   L +++ AS  + + + GKQ+QA+  
Sbjct: 1067 WNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAI 1126

Query: 114  KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            K G+ + ++V S ++D+Y K   + +A  +F EI   + V    ++SGY E       L 
Sbjct: 1127 KLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALS 1186

Query: 174  LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
            +  LM   G+  D +T + L++A + L+A E G+Q+HA +++   +L  D F+ +SL++M
Sbjct: 1187 VYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL--DHFVGTSLVDM 1244

Query: 234  YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
            Y KCG V  A +VF     R        VV W +ML    ++G+  E + L+  M  NG 
Sbjct: 1245 YCKCGSVQDAYRVFRKMDVR-------KVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGI 1297

Query: 294  KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            +PD+V F+ V+SACSH+G      +YF+ M   Y + P  EHYSCLVD L RAG + +A 
Sbjct: 1298 QPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAE 1357

Query: 354  KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
             +I  M  +    +S SM+ ALL AC   G  E  K  A K L LDP +   YV+LSN+Y
Sbjct: 1358 NVIASMPFK----ASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIY 1413

Query: 414  AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            A    WD++   R +MK K +KKD G SWI+V
Sbjct: 1414 AASRQWDDVTDARNMMKLKNVKKDPGFSWIDV 1445



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 154/322 (47%), Gaps = 21/322 (6%)

Query: 45   FLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
            F    N   +N  +++F   G  + A+  F  +    I  D+  L   L+A+    D   
Sbjct: 853  FDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDL 912

Query: 105  GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            G+Q+ A V KS +   V V ++L+++Y+K  +++ AE  F   P  + +  N ++S Y +
Sbjct: 913  GEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQ 972

Query: 165  AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF---GRQVHAYMIRKCCNLG 221
              L    +   R +   GL  D FTL+++LRAC+     E+   G QVH Y I+  C + 
Sbjct: 973  NNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIK--CGII 1030

Query: 222  NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            ND F+ ++LI++Y K G + +A  +       L G+ + D+  W +++  Y ++   ++ 
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFL-------LHGKYDFDLASWNAIMFGYIKSNKSRKA 1083

Query: 282  IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YS 337
            ++ +  M   G   DE+   T I A      +K G +     +  Y ++ G  +     S
Sbjct: 1084 LEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ-----IQAYAIKLGFNNDLWVSS 1138

Query: 338  CLVDLLCRAGELDKAWKLINEM 359
             ++D+  + G++  A +L  E+
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEI 1160



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 142/341 (41%), Gaps = 56/341 (16%)

Query: 49   RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI---FLDTYALCSSLTASTSVKDARFG 105
            R+ + +NV++  +  N     AL+ FS  H  G    F + + +   + +  S    R  
Sbjct: 781  RDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHA 840

Query: 106  KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            +QV+A+  K                            MF      N    N  L+ +  A
Sbjct: 841  EQVKAYAMK----------------------------MFPFDQGSNIFAWNKKLTEFLHA 872

Query: 166  KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                  ++  + +    + +D  TL  +L A  G    + G Q+HA +I+   +    V 
Sbjct: 873  GQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK--SSFAPVVP 930

Query: 226  MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK---DVVLWTSMLGVYGRNGYFKEVI 282
            + +SL+ MY K G+V  A + F          IN    D++ W +M+  Y +N    E I
Sbjct: 931  VSNSLMNMYSKAGVVYAAEKTF----------INSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 283  KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW--MVHDYKLEPGPEHYS--- 337
              +  +L +G KPD+    +V+ ACS TG      EYF     VH Y ++ G  + S   
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACS-TGDEG---EYFTLGSQVHVYAIKCGIINDSFVS 1036

Query: 338  -CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
              L+DL  + G++D+A  L++   D    S +  M+G + S
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKS 1077



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 14/207 (6%)

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           ++ ++ D + GK+  A +  SG L   ++ + LI +Y+K   +  A  +FD+   ++ V 
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 155 ANALLSGYCEAKLWA-----GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
            N++L+ Y +    +      G  L  L+   G      TL+ LL+ C      +    V
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H Y ++    L  D+F+  +L+ +Y K GLV +A  +F+    R       D VLW  ML
Sbjct: 740 HGYAVKIGFEL--DLFVSGALVNIYCKYGLVGQARLLFDKMPER-------DAVLWNVML 790

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPD 296
             Y  N +  E ++ + A   +G  PD
Sbjct: 791 KAYVENSFQDEALRFFSAFHRSGFXPD 817



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 4/149 (2%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           +  + V  +  K G+   +FV  AL+++Y K  L+  A L+FD++P +++V  N +L  Y
Sbjct: 734 QVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAY 793

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALL---RACAGLSAAEFGRQVHAYMIRK-CC 218
            E       L         G   D   L  ++    +    +      QV AY ++    
Sbjct: 794 VENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPF 853

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
           + G+++F  +  +  +   G +  A+  F
Sbjct: 854 DQGSNIFAWNKKLTEFLHAGQIVAAIDCF 882


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  250 bits (639), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 137/402 (34%), Positives = 222/402 (55%), Gaps = 17/402 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +N +I+   +N   +  L  F  M    +  D +   S + A    +   +G
Sbjct: 401 MERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYG 460

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            ++   + KSG     FVGSAL+D+Y K  ++ +AE + D +  K +V  N+++SG+   
Sbjct: 461 MEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQ 520

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           K           M  +G+  D+FT + +L  CA ++  E G+Q+HA +++   NL +DV+
Sbjct: 521 KQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILK--LNLHSDVY 578

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRL--EGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           + S+L++MY KCG         N+   RL  E    +D V W++M+  Y  +G+ ++ IK
Sbjct: 579 IASTLVDMYSKCG---------NMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIK 629

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           L+E M +   KP+   F++V+ AC+H G V  G+ YF+ M   Y L+P  EHYSC+VDLL
Sbjct: 630 LFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLL 689

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            R+ ++++A KLI  M    H  +   +W  LLS C   G  E+ + A    L+LDP + 
Sbjct: 690 GRSDQVNEALKLIESM----HFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDS 745

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             YV+L+N+YA   MW E+ ++R +MK   LKK+ GCSWIEV
Sbjct: 746 SAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEV 787



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 182/388 (46%), Gaps = 27/388 (6%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLD 85
           Y  C    +   + N L    P  P   +N +I  + R    L AL+ F  +    +  D
Sbjct: 284 YAKCDRMSDAWKVFNTL----PNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFD 339

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
             +L  +LTA + +K    G Q+     K G   ++ V + ++D+Y K   + +A  +FD
Sbjct: 340 EISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFD 399

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
           ++  +++V  NA+++ + + +     L L   M    ++ D FT  ++++ACAG  A  +
Sbjct: 400 DMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNY 459

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G ++H  +++    +G D F+ S+L++MYGKCG++ +A ++ +    RLE    K  V W
Sbjct: 460 GMEIHGRIVKS--GMGLDWFVGSALVDMYGKCGMLMEAEKIHD----RLE---EKTTVSW 510

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            S++  +      +   + +  ML  G  PD   + TV+  C++   ++LG +    ++ 
Sbjct: 511 NSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQIL- 569

Query: 326 DYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHD 381
             KL    + Y  S LVD+  + G +  +  +  +   R + +     W A++   A H 
Sbjct: 570 --KLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVT-----WSAMICAYAYHG 622

Query: 382 CGKFELGKLAAQKALELDP-HNVGIYVM 408
            G+  +      + L + P H + I V+
Sbjct: 623 HGEQAIKLFEEMQLLNVKPNHTIFISVL 650



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 167/348 (47%), Gaps = 23/348 (6%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           N+G   +    +  R+ + +N ++S +  NG    +++ F  M    I  D       L 
Sbjct: 87  NMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLK 146

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A + ++D   G QV     + G+ + V  GSAL+D+Y+K   +  A  +F E+P +N VC
Sbjct: 147 ACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVC 206

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            +A+++GY +   +  GL+L + M  +G+     T +++ R+CAGLSA + G Q+H + +
Sbjct: 207 WSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHAL 266

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           +   +   D  + ++ ++MY KC  ++ A +VFN   +      N  +V        Y R
Sbjct: 267 KS--DFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIV-------GYAR 317

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
                + +++++++       DE++    ++ACS       GI+     +H   ++ G  
Sbjct: 318 QDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQ-----LHGLAVKCGLG 372

Query: 335 HYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
              C    ++D+  + G L +A  + ++M  R   S     W A+++A
Sbjct: 373 FNICVANTILDMYGKCGALVEACTIFDDMERRDAVS-----WNAIIAA 415



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 142/323 (43%), Gaps = 62/323 (19%)

Query: 72  KTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY 131
           K F+F H+          CS+L A         GKQ  A +  + ++ +++V + L+  Y
Sbjct: 5   KKFTFSHI-------LQKCSNLKALNP------GKQAHAQMIVTSFVPTIYVANCLVQFY 51

Query: 132 AK------LLLIHD-------------------------AELMFDEIPVKNSVCANALLS 160
            K         + D                         A+ +FD +P ++ V  N+LLS
Sbjct: 52  CKSSNMNYAFKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLS 111

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            Y    +    +E+   M +L + +D+ T S +L+AC+G+     G QVH   I+     
Sbjct: 112 CYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQ--MGF 169

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            NDV   S+L++MY KC  +  A ++F     R       ++V W++++  Y +N  F E
Sbjct: 170 ENDVVTGSALVDMYSKCKKLDGAFRIFREMPER-------NLVCWSAVIAGYVQNDRFIE 222

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL- 339
            +KL++ ML  G    +  + +V  +C+     KLG +     +H + L+    + S + 
Sbjct: 223 GLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQ-----LHGHALKSDFAYDSIIG 277

Query: 340 ---VDLLCRAGELDKAWKLINEM 359
              +D+  +   +  AWK+ N +
Sbjct: 278 TATLDMYAKCDRMSDAWKVFNTL 300


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  250 bits (639), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 144/400 (36%), Positives = 225/400 (56%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I+   RNG  + AL+ F  M   G+ +D   + S L A+  ++D  FG+ V
Sbjct: 167 KDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWV 226

Query: 109 QAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
                +SG  +  V+VGSAL+D+Y+K     DA  +F+E+P +N V   AL++GY +   
Sbjct: 227 HGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNR 286

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +   L++ + M   G++ +  T+++ L ACA L + + GR +H Y+ R    LG +  + 
Sbjct: 287 YKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRS--KLGLNSKLG 344

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L++MY KCG V +AL VF       E    KDV  WT+M+      G     + L+  
Sbjct: 345 TALVDMYSKCGCVDEALLVF-------EKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQ 397

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M+ +  +P+ V F+ V+SAC+H G V  G+E F  M+ DY+LEP  +HY C+VDLL RAG
Sbjct: 398 MIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAG 457

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L++A K I  M        +  +WGAL S C     FELG+      ++L PH+ G Y+
Sbjct: 458 RLEEAIKFIESM----PMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYI 513

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +L+NLY++   W+    +R LMK KG+ K   CSWIEV G
Sbjct: 514 LLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNG 553



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 186/403 (46%), Gaps = 36/403 (8%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++  F  +  P   L  +S +  HG+  D +     L A + +++     Q  AH+ 
Sbjct: 72  WNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNEN-PFQFYAHIV 130

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G     FV ++L+  +A    +  +  +F E   K+ V   AL++G          LE
Sbjct: 131 KFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALE 190

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M + G++ D  T+ ++L A A L    FGR VH + + +   +  DV++ S+L++M
Sbjct: 191 CFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYV-ESGRVIWDVYVGSALVDM 249

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG    A++VFN    R       ++V W +++  Y +   +KE +K+++ M++ G 
Sbjct: 250 YSKCGYCDDAVKVFNEMPTR-------NLVSWGALIAGYVQCNRYKEALKVFQEMIIEGI 302

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA- 352
           +P++    + ++AC+  G +  G    E+ V   KL    +  + LVD+  + G +D+A 
Sbjct: 303 EPNQSTVTSALTACAQLGSLDQGRWLHEY-VDRSKLGLNSKLGTALVDMYSKCGCVDEAL 361

Query: 353 -------------WK-LINEMLDRGHGSSSVSMWGALL-SACHDCGKFELGKLAA----- 392
                        W  +IN +  RG   SS++++  ++ S     G   LG L+A     
Sbjct: 362 LVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGG 421

Query: 393 --QKALELDPHNVGIYVMLSNLYAKFCMWD---EIGQLRELMK 430
              + LEL    +  Y +  N+    CM D     G+L E +K
Sbjct: 422 LVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIK 464


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  250 bits (639), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 139/403 (34%), Positives = 222/403 (55%), Gaps = 15/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + +  R+ + +  +++   +NG  L AL  F  M   G+ +D Y   S LTA  ++   
Sbjct: 235 FQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAAL 294

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GKQ+ A++T++ +  +VFVGSAL+D+Y+K   I  AE +F  +  +N +   A++ GY
Sbjct: 295 EEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       +     M   G+  D FTL +++ +CA L++ E G Q H   +     L  
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLAL--VSGLMR 412

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEV 281
            + + ++L+ +YGKCG +  A        HRL  E++  D V WT+++  Y + G  KE 
Sbjct: 413 YITVSNALVTLYGKCGSIEDA--------HRLFDEMSFHDQVSWTALVTGYAQFGKAKET 464

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           I L+E ML NG KPD V F+ V+SACS  G V+ G +YF+ M  D+ + P  +HY+C++D
Sbjct: 465 IDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMID 524

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           L  R+G   +A + I +M    H   +   W  LLS+C   G  E+GK AA+  LE DP 
Sbjct: 525 LYSRSGRFKEAEEFIKQM---PHSPDAFG-WATLLSSCRLRGNMEIGKWAAENLLETDPQ 580

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           N   YV+L +++A    W E+  LR  M+++ +KK+ GCSWI+
Sbjct: 581 NPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 181/389 (46%), Gaps = 55/389 (14%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALC 90
           H + +  +      +  R+ + +N +I+ F   GSP  +++ + + +    +      L 
Sbjct: 91  HSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLS 150

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           + +  ++++ D   G  V   V + G+ +  FVGS L+D+YAK+ LI DA  +F E+  K
Sbjct: 151 AMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAK 210

Query: 151 NSVCANALLSGYCEAKL------------------WAG-------------GLELVRLMP 179
             V  N L++G    K+                  W                L++ R M 
Sbjct: 211 TVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMR 270

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
           A G+  D +T  ++L AC  L+A E G+Q+HAY+ R      ++VF+ S+L++MY KC  
Sbjct: 271 AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYE--DNVFVGSALVDMYSKCRS 328

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           +  A  VF     R       +++ WT+M+  YG+N   +E ++ +  M M+G KPD+  
Sbjct: 329 IRLAEAVFRRMTCR-------NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKL 355
             +VIS+C++   ++ G ++     H   L  G   Y    + LV L  + G ++ A +L
Sbjct: 382 LGSVISSCANLASLEEGAQF-----HCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGK 384
            +EM      S     W AL++     GK
Sbjct: 437 FDEMSFHDQVS-----WTALVTGYAQFGK 460


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  250 bits (639), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 144/392 (36%), Positives = 220/392 (56%), Gaps = 13/392 (3%)

Query: 54   FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
            +N ++  + ++     AL+ FS MH  GI +D   L +++ AS  + + + GKQ+QA+  
Sbjct: 1067 WNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAI 1126

Query: 114  KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            K G+ + ++V S ++D+Y K   + +A  +F EI   + V    ++SGY E       L 
Sbjct: 1127 KLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALS 1186

Query: 174  LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
            +  LM   G+  D +T + L++A + L+A E G+Q+HA +++   +L  D F+ +SL++M
Sbjct: 1187 VYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL--DHFVGTSLVDM 1244

Query: 234  YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
            Y KCG V  A +VF     R        VV W +ML    ++G+  E + L+  M  NG 
Sbjct: 1245 YCKCGSVQDAYRVFRKMDVR-------KVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGI 1297

Query: 294  KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            +PD+V F+ V+SACSH+G      +YF+ M   Y + P  EHYSCLVD L RAG + +A 
Sbjct: 1298 QPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAE 1357

Query: 354  KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
             +I  M  +    +S SM+ ALL AC   G  E  K  A K L LDP +   YV+LSN+Y
Sbjct: 1358 NVIASMPFK----ASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIY 1413

Query: 414  AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            A    WD++   R +MK K +KKD G SWI+V
Sbjct: 1414 AASRQWDDVTDARNMMKLKNVKKDPGFSWIDV 1445



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 154/322 (47%), Gaps = 21/322 (6%)

Query: 45   FLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
            F    N   +N  +++F   G  + A+  F  +    I  D+  L   L+A+    D   
Sbjct: 853  FDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDL 912

Query: 105  GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            G+Q+ A V KS +   V V ++L+++Y+K  +++ AE  F   P  + +  N ++S Y +
Sbjct: 913  GEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQ 972

Query: 165  AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF---GRQVHAYMIRKCCNLG 221
              L    +   R +   GL  D FTL+++LRAC+     E+   G QVH Y I+  C + 
Sbjct: 973  NNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIK--CGII 1030

Query: 222  NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            ND F+ ++LI++Y K G + +A  +       L G+ + D+  W +++  Y ++   ++ 
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFL-------LHGKYDFDLASWNAIMFGYIKSNKSRKA 1083

Query: 282  IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YS 337
            ++ +  M   G   DE+   T I A      +K G +     +  Y ++ G  +     S
Sbjct: 1084 LEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ-----IQAYAIKLGFNNDLWVSS 1138

Query: 338  CLVDLLCRAGELDKAWKLINEM 359
             ++D+  + G++  A +L  E+
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEI 1160



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 142/341 (41%), Gaps = 56/341 (16%)

Query: 49   RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLD---TYALCSSLTASTSVKDARFG 105
            R+ + +NV++  +  N     AL+ FS  H  G F D    + +   + +  S    R  
Sbjct: 781  RDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHA 840

Query: 106  KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            +QV+A+  K                            MF      N    N  L+ +  A
Sbjct: 841  EQVKAYAMK----------------------------MFPFDQGSNIFAWNKKLTEFLHA 872

Query: 166  KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                  ++  + +    + +D  TL  +L A  G    + G Q+HA +I+   +    V 
Sbjct: 873  GQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK--SSFAPVVP 930

Query: 226  MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK---DVVLWTSMLGVYGRNGYFKEVI 282
            + +SL+ MY K G+V  A + F          IN    D++ W +M+  Y +N    E I
Sbjct: 931  VSNSLMNMYSKAGVVYAAEKTF----------INSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 283  KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW--MVHDYKLEPGPEHYS--- 337
              +  +L +G KPD+    +V+ ACS TG      EYF     VH Y ++ G  + S   
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACS-TGDEG---EYFTLGSQVHVYAIKCGIINDSFVS 1036

Query: 338  -CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
              L+DL  + G++D+A  L++   D    S +  M+G + S
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKS 1077



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 14/207 (6%)

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           ++ ++ D + GK+  A +  SG L   ++ + LI +Y+K   +  A  +FD+   ++ V 
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 155 ANALLSGYCEAKLWA-----GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
            N++L+ Y +    +      G  L  L+   G      TL+ LL+ C      +    V
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H Y ++    L  D+F+  +L+ +Y K GLV +A  +F+    R       D VLW  ML
Sbjct: 740 HGYAVKIGFEL--DLFVSGALVNIYCKYGLVGQARLLFDKMPER-------DAVLWNVML 790

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPD 296
             Y  N +  E ++ + A   +G  PD
Sbjct: 791 KAYVENSFQDEALRFFSAFHRSGFFPD 817



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 4/149 (2%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           +  + V  +  K G+   +FV  AL+++Y K  L+  A L+FD++P +++V  N +L  Y
Sbjct: 734 QVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAY 793

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALL---RACAGLSAAEFGRQVHAYMIRK-CC 218
            E       L         G   D   L  ++    +    +      QV AY ++    
Sbjct: 794 VENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPF 853

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
           + G+++F  +  +  +   G +  A+  F
Sbjct: 854 DQGSNIFAWNKKLTEFLHAGQIVAAIDCF 882


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  250 bits (639), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 13/392 (3%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           + +IS +  NG    A+K F ++   GI  +  A+ S L A  S+   + G+++ ++  K
Sbjct: 418 STMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALK 477

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           + +    +V SAL+D+YAK   +  +  +F +I  K+ V  N+++S + +       L L
Sbjct: 478 NAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNL 537

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M   G+ Y + T+S++L ACA L A  +G+++H  +I+    +  D+F +S+LI+MY
Sbjct: 538 FREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKG--PIRADLFAESALIDMY 595

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
           GKCG +  A +VF       E    K+ V W S++  YG  G  KE + L   M   G K
Sbjct: 596 GKCGNLEWAHRVF-------ESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFK 648

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
            D V F+ ++SAC+H GQV+ G+  F  M  +Y++ P  EH++C+VDL  RAG+LDKA +
Sbjct: 649 ADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAME 708

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
           LI +M  +        +WGALL AC      EL ++A+Q+  +LDPHN G YV++SN+ A
Sbjct: 709 LIVDMPFK----PDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINA 764

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
               WD + ++R LMK+  ++K  G SW++V 
Sbjct: 765 VAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVN 796



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 167/337 (49%), Gaps = 23/337 (6%)

Query: 46  LNPRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           L PR+ L  +N +IS   +NG    AL  F  M   GI  D+  L S L A T +     
Sbjct: 307 LMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQ 366

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK++  ++ ++     VF+ SAL+D+Y K   +  A+ ++D     + V  + ++SGY  
Sbjct: 367 GKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             +    +++ R +   G+  +   ++++L ACA ++A + G+++H+Y ++         
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYE--GRC 484

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           +++S+L++MY KCG +  +  +F+           KD V W SM+  + +NG  +E + L
Sbjct: 485 YVESALMDMYAKCGRLDLSHYIFSKIS-------AKDEVTWNSMISSFAQNGEPEEALNL 537

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-----SCL 339
           +  M M G K   V   +V+SAC+    +  G E     +H   ++ GP        S L
Sbjct: 538 FREMCMEGVKYSNVTISSVLSACASLPAIYYGKE-----IHGVVIK-GPIRADLFAESAL 591

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGS--SSVSMWGA 374
           +D+  + G L+ A ++   M ++   S  S ++ +GA
Sbjct: 592 IDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGA 628



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 158/356 (44%), Gaps = 14/356 (3%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM- 77
            Q+RL+  Y   R  ++   + + L        LP+N +I      G    AL  +  M 
Sbjct: 77  LQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMW 136

Query: 78  -HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
            H      D++     + +  ++     G+ V       G    +FVGSALI +YA   L
Sbjct: 137 AHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGL 196

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DA  +FD +  ++ V  N ++ GY +A   +  +EL   M A G + +  TL+  L  
Sbjct: 197 LWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSV 256

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            A  S   FG Q+H   ++    L ++V + ++L+ MY KC  +    ++F L       
Sbjct: 257 SATESDLFFGVQLHTLAVKY--GLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPR---- 310

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               D+V W  M+    +NG+  + + L+  M  +G +PD V  V+++ A +       G
Sbjct: 311 ---DDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQG 367

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLL--CRAGELDKAWKLINEMLDRGHGSSSVS 370
            E   ++V +  +       S LVD+   CRA  + ++    ++ +D   GS+ +S
Sbjct: 368 KELHGYIVRNC-VHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMIS 422



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 7/224 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ ++ + +N +IS F +NG P  AL  F  M + G+      + S L+A  S+    +G
Sbjct: 510 ISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG 569

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   V K    + +F  SALID+Y K   +  A  +F+ +P KN V  N++++ Y   
Sbjct: 570 KEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAY 629

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    + L+R M   G   DH T  AL+ ACA     + G ++   M  +   +   + 
Sbjct: 630 GLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEE-YQIAPRME 688

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
             + ++++Y + G + KA+++       ++     D  +W ++L
Sbjct: 689 HFACMVDLYSRAGKLDKAMELI------VDMPFKPDAGIWGALL 726


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  250 bits (639), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 138/385 (35%), Positives = 222/385 (57%), Gaps = 13/385 (3%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + RNGSP  AL  +  M    I    +++  +L A   +KD R G+ + A + K      
Sbjct: 211 YSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVD 270

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
             V + L+ LY +  L  DA  +FD +  +N V  N+L+S   +         L R M  
Sbjct: 271 QVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQE 330

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             + +   TL+ +L AC+ ++A   G+++HA +++       DV + +SL++MYGKCG V
Sbjct: 331 EMIGFSWATLTTILPACSRVAALLTGKEIHAQILKS--KEKPDVPLLNSLMDMYGKCGEV 388

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             + +VF++        + KD+  W  ML  Y  NG  +EVI L+E M+ +G  PD + F
Sbjct: 389 EYSRRVFDVM-------LTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITF 441

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V ++S CS TG  + G+  FE M  ++++ P  EHY+CLVD+L RAG++ +A K+I  M 
Sbjct: 442 VALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMP 501

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +     S S+WG+LL++C   G   +G++AA++   L+PHN G YVM+SN+YA   MWD
Sbjct: 502 FK----PSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWD 557

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
            + ++RE+MK++G+KK+ GCSW++V
Sbjct: 558 NVDKIREMMKQRGVKKEAGCSWVQV 582



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 13/188 (6%)

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-L 249
           + LL AC    +   G ++ + +I    +L ++  + S LI ++  C  +  A ++F+ +
Sbjct: 135 TDLLHACISAKSLHHGIKICS-LILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDV 193

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
               L  E      +W +M   Y RNG  ++ + +Y  ML +  +P   +    + AC  
Sbjct: 194 TDSSLLTE-----KVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVD 248

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
              +++G      +V   K +     Y+ L+ L   +G  D A K+ + M +R     +V
Sbjct: 249 LKDLRVGRGIHAQIVK-RKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSER-----NV 302

Query: 370 SMWGALLS 377
             W +L+S
Sbjct: 303 VTWNSLIS 310


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  250 bits (639), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 142/396 (35%), Positives = 225/396 (56%), Gaps = 13/396 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           +P++ +I+ + ++     A++ F  M    +  + + L S L A  S+ D + G Q+  H
Sbjct: 313 IPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCH 372

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V K G   +VFV +AL+D+YAK   + ++  +F E P    V  N ++ GY +A      
Sbjct: 373 VVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKA 432

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L L + M    +     T S++LRACAG++A E G Q+H+  ++   +   +  + ++LI
Sbjct: 433 LILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYD--KNTVVGNALI 490

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KCG +  A  VF++           D V W +M+  Y  +G + E +K +E+ML  
Sbjct: 491 DMYAKCGNIKDARLVFDMLREH-------DQVSWNAMISGYSVHGLYGEALKTFESMLET 543

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
             KPD+V FV ++SACS+ G +  G  YF+ MV +Y +EP  EHY+C+V LL R+G LDK
Sbjct: 544 ECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDK 603

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
           A KL++E+        SV +W ALLSAC      ELG+++AQ+ LE++P +   +V+LSN
Sbjct: 604 AAKLVHEI----PFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSN 659

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +YA    W  +  +R  MK KG++K+ G SWIE  G
Sbjct: 660 IYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQG 695



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 163/348 (46%), Gaps = 20/348 (5%)

Query: 15  CLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF 74
           CL +F + ++L +       +L         +  RN + F  +I  + +      A+  F
Sbjct: 76  CLDLFANNILLNFYV--KYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLF 133

Query: 75  SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
           S +   G  L+ +   + L    S + A+ G  V A V K G+ S  FVG+ALID Y+  
Sbjct: 134 SRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVC 193

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
                A  +FD I  K+ V    +++ Y E + +   L+L   M  +G   ++FT +++L
Sbjct: 194 GYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVL 253

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
           +AC GL     G+ VH    +   +   ++F+   LI++Y K G V  ALQVF       
Sbjct: 254 KACVGLEVFNVGKAVHGCAFKT--SYLEELFVGVELIDLYIKSGDVDDALQVF------- 304

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
           E     DV+ W+ M+  Y ++   +E I+++  M      P++    +++ AC+    ++
Sbjct: 305 EEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQ 364

Query: 315 LGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINE 358
           LG +     +H + ++ G +      + L+D+  + G ++ + +L +E
Sbjct: 365 LGNQ-----IHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSE 407



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 145/311 (46%), Gaps = 28/311 (9%)

Query: 60  DFCRNGSPLYALKTFSFM-----HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           + C++ + L  +   SF+     H    F +TY   S L +     D   GK +   + K
Sbjct: 14  NHCKSNTALCIITQRSFLAQRTSHSSPEF-NTYIYGSLLQSCIRNGDCATGKYLHCEIIK 72

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            G    +F  + L++ Y K   + DA  +FDE+P +N+V    L+ GY +   ++  + L
Sbjct: 73  KGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGL 132

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              +   G + + F  S +L+       A+ G  VHA + +      +D F+ ++LI+ Y
Sbjct: 133 FSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYK--LGFDSDAFVGTALIDCY 190

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
             CG    A QVF+   +       KD+V WT M+  Y  N  F+E +KL+  M + G K
Sbjct: 191 SVCGYAECARQVFDAIEY-------KDMVSWTGMVACYVENECFEESLKLFSRMRIVGFK 243

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEW--MVHD--YKLEPGPEHYSC--LVDLLCRAGE 348
           P+   F +V+ AC       +G+E F     VH   +K     E +    L+DL  ++G+
Sbjct: 244 PNNFTFASVLKAC-------VGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGD 296

Query: 349 LDKAWKLINEM 359
           +D A ++  EM
Sbjct: 297 VDDALQVFEEM 307


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 240/414 (57%), Gaps = 16/414 (3%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           NLG      + +  R+ + +N +I+ + +N  P+ A   F  M ++G+  D   L S  +
Sbjct: 323 NLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLAS 382

Query: 95  ASTSVKDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            +   +D +  + V   + + GWL  +V +G+A++D+YAKL +I  A  +F+ IPVK+ V
Sbjct: 383 IAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVV 442

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPA-LGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
             N L+SGY +  L +  +E+ R+M     +  +  T  ++L A A + A + G ++H +
Sbjct: 443 SWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGH 502

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           +I+   NL  DVF+ + LI++YGKCG +  A+ +F    +++  E +   V W +++  +
Sbjct: 503 LIK--TNLHLDVFVGTCLIDLYGKCGRLVDAMCLF----YQVPRESS---VPWNAIISCH 553

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           G +G+ ++ +KL+  M   G KPD V F++++SACSH+G V  G  +F  M  +Y ++P 
Sbjct: 554 GIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLM-QEYGIKPS 612

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
            +HY C+VDLL RAG L+ A+  I +M          S+WGALL AC   G  ELGK A+
Sbjct: 613 LKHYGCMVDLLGRAGFLEMAYDFIKDM----PLHPDASIWGALLGACRIHGNIELGKFAS 668

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
            +  E+D  NVG YV+LSN+YA    W+ + ++R L +E+GLKK  G S IEV 
Sbjct: 669 DRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVN 722



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 148/313 (47%), Gaps = 13/313 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           +  ++   +N +IS + RNG    A+  F   + V     D Y     L A  ++ D   
Sbjct: 134 IQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD--- 190

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+++   V K G+   VFV ++LI +Y++   +  A  +FD++P ++    NA++SG  +
Sbjct: 191 GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQ 250

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
               A  L+++  M   G++ D  T++++L  CA L        +H Y+I+    L  ++
Sbjct: 251 NGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKH--GLEFEL 308

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++LI MY K G +  A +VF       +    +DVV W S++  Y +N         
Sbjct: 309 FVSNALINMYAKFGNLGDAQKVF-------QQMFLRDVVSWNSIIAAYEQNDDPVTARGF 361

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M +NG +PD +  V++ S  + +   K       +++    L       + ++D+  
Sbjct: 362 FFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYA 421

Query: 345 RAGELDKAWKLIN 357
           + G +D A K+ N
Sbjct: 422 KLGVIDSAHKVFN 434



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 127/279 (45%), Gaps = 27/279 (9%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            K++ A +  SG + S F+   L++LYA L  +  +   FD+I  K+    N+++S Y  
Sbjct: 92  AKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVR 151

Query: 165 AKLWAGGLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
              +   ++   +L+       D +T   +L+AC  L     GR++H ++ +       D
Sbjct: 152 NGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFK--LGFQWD 206

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           VF+ +SLI MY + G V  A  +F+    R       D+  W +M+    +NG   + + 
Sbjct: 207 VFVAASLIHMYSRFGFVGIARSLFDDMPFR-------DMGSWNAMISGLIQNGNAAQALD 259

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCL 339
           + + M + G   D V   +++  C+  G +         ++H Y ++ G E      + L
Sbjct: 260 VLDEMRLEGINMDSVTVASILPVCAQLGDISTAT-----LIHLYVIKHGLEFELFVSNAL 314

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +++  + G L  A K+  +M  R      V  W ++++A
Sbjct: 315 INMYAKFGNLGDAQKVFQQMFLR-----DVVSWNSIIAA 348


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 148/397 (37%), Positives = 229/397 (57%), Gaps = 14/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I+   +NGS   AL+ F  + + GI LD   + S L A + +K     K++
Sbjct: 483 KDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEI 542

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +++ + G LS + + + ++D+Y +   +  A  MF+ I  K+ V   +++S Y    L 
Sbjct: 543 HSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLA 601

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL  LM   G++ D  +L ++L A A LSA + G+++H ++IRK   L     + S
Sbjct: 602 NEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGS--LAS 659

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY +CG + K+  VFN          NKD+VLWTSM+  YG +G  +  I L+  M
Sbjct: 660 TLVDMYARCGTLEKSRNVFNFIR-------NKDLVLWTSMINAYGMHGCGRAAIDLFRRM 712

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                 PD +AFV V+ ACSH+G +  G  + E M ++Y+LEP PEHY CLVDLL RA  
Sbjct: 713 EDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANH 772

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A++ +  M        +  +W ALL AC      ELG++AAQK LE+DP N G YV+
Sbjct: 773 LEEAYQFVKGM----EVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVL 828

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +SN+YA    W ++ ++R  MK  GLKK+ GCSWIEV
Sbjct: 829 VSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEV 865



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 195/376 (51%), Gaps = 18/376 (4%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G   N    ++  + + +N ++S F +NG    AL+ +  M   G   D  A+ S + A
Sbjct: 369 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAA 428

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
           S    +   G Q+ A+  K+G  S + VG++L+D+YAK   +   + +FD++P K+ V  
Sbjct: 429 SARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSW 488

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
             +++G+ +    +  LEL R +   G+D D   +S++L AC+GL      +++H+Y+IR
Sbjct: 489 TTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR 548

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
           K     +D+ +Q+ ++++YG+CG V  A ++F L          KDVV WTSM+  Y  N
Sbjct: 549 KGL---SDLVLQNGIVDVYGECGNVDYAARMFELIEF-------KDVVSWTSMISCYVHN 598

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G   E ++L+  M   G +PD ++ V+++SA +    +K G E   +++    +  G   
Sbjct: 599 GLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG-SL 657

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCGKFELGKLAAQ 393
            S LVD+  R G L+K+  + N + ++      + +W ++++A   H CG+  +      
Sbjct: 658 ASTLVDMYARCGTLEKSRNVFNFIRNK-----DLVLWTSMINAYGMHGCGRAAIDLFRRM 712

Query: 394 KALELDPHNVGIYVML 409
           +   + P ++    +L
Sbjct: 713 EDESIAPDHIAFVAVL 728



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 162/336 (48%), Gaps = 25/336 (7%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVV 57
            VHAH   +  L    +   +RL+  Y  C      G L +  K  +    +    +N +
Sbjct: 135 QVHAHMITSNALFNS-VFLSTRLVFMYGKC------GCLVDAEKLFDGMPHKTIFTWNAM 187

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I  +  NG PL +L+ +  M V GI LD       L A   +KD R G +V     K G+
Sbjct: 188 IGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGY 247

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA-NALLSGYCEAKLWAGGLELVR 176
           +S VFV ++++ +Y K   ++ A  +FD +P K  V + N+++S Y         L L  
Sbjct: 248 VSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFG 307

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M    L  + +T  A L+AC   S  + G  +HA +++    +  +VF+ ++LI MY +
Sbjct: 308 EMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI--NVFVANALIAMYAR 365

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
            G + +A  +F    + ++   + D + W SML  + +NG + E ++ Y  M   G KPD
Sbjct: 366 FGKMGEAANIF----YNMD---DWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPD 418

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            VA +++I+A + +G    G++     +H Y ++ G
Sbjct: 419 LVAVISIIAASARSGNTLNGMQ-----IHAYAMKNG 449



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 163/349 (46%), Gaps = 27/349 (7%)

Query: 14  ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKT 73
           + ++   + ++  YT C        L +  +     + + +N +IS +  NG  + AL+ 
Sbjct: 248 VSIVFVANSIVGMYTKCNDLNGARQLFD--RMPEKEDVVSWNSMISAYSSNGQSIEALRL 305

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ---VQAHVTKSGWLSSVFVGSALIDL 130
           F  M    +  +TY   ++L A    +D+ F KQ   + A V KS +  +VFV +ALI +
Sbjct: 306 FGEMQKASLAPNTYTFVAALQA---CEDSSFIKQGMFIHATVLKSSYYINVFVANALIAM 362

Query: 131 YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
           YA+   + +A  +F  +   +++  N++LSG+ +  L+   L+    M   G   D   +
Sbjct: 363 YARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAV 422

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
            +++ A A       G Q+HAY ++    L +D+ + +SL++MY K   +     +F+  
Sbjct: 423 ISIIAASARSGNTLNGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKM 480

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
                   +KDVV WT+++  + +NG     ++L+  + + G   D +   +++ ACS  
Sbjct: 481 P-------DKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGL 533

Query: 311 GQVKLGIEYFEWMVH----DYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
             +    E   +++     D  L+ G      +VD+    G +D A ++
Sbjct: 534 KLISSVKEIHSYIIRKGLSDLVLQNG------IVDVYGECGNVDYAARM 576



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 21/198 (10%)

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           S++L  C    A   G+QVHA+MI     L N VF+ + L+ MYGKCG +  A ++F   
Sbjct: 118 SSVLELCGSKKALSEGQQVHAHMITSNA-LFNSVFLSTRLVFMYGKCGCLVDAEKLF--- 173

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
               +G  +K +  W +M+G Y  NG     ++LY  M ++G   D   F  ++ AC   
Sbjct: 174 ----DGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLL 229

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
              + G E     VH   ++ G        + +V +  +  +L+ A +L + M ++    
Sbjct: 230 KDRRCGAE-----VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEK---- 280

Query: 367 SSVSMWGALLSACHDCGK 384
             V  W +++SA    G+
Sbjct: 281 EDVVSWNSMISAYSSNGQ 298



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 96/207 (46%), Gaps = 6/207 (2%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H++    GL     ++ Q+ ++  Y  C    N+       + +  ++ + +  +IS +
Sbjct: 542 IHSYIIRKGL---SDLVLQNGIVDVYGEC---GNVDYAARMFELIEFKDVVSWTSMISCY 595

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             NG    AL+ F  M   G+  D+ +L S L+A+ S+   + GK++   + + G++   
Sbjct: 596 VHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG 655

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            + S L+D+YA+   +  +  +F+ I  K+ V   ++++ Y         ++L R M   
Sbjct: 656 SLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDE 715

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQ 208
            +  DH    A+L AC+       GR+
Sbjct: 716 SIAPDHIAFVAVLYACSHSGLMNEGRR 742


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 138/385 (35%), Positives = 222/385 (57%), Gaps = 13/385 (3%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + RNGSP  AL  +  M    I    +++  +L A   +KD R G+ + A + K      
Sbjct: 218 YSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVD 277

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
             V + L+ LY +  L  DA  +FD +  +N V  N+L+S   +         L R M  
Sbjct: 278 QVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQE 337

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             + +   TL+ +L AC+ ++A   G+++HA +++       DV + +SL++MYGKCG V
Sbjct: 338 EMIGFSWATLTTILPACSRVAALLTGKEIHAQILK--SKEKPDVPLLNSLMDMYGKCGEV 395

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             + +VF++        + KD+  W  ML  Y  NG  +EVI L+E M+ +G  PD + F
Sbjct: 396 EYSRRVFDVM-------LTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITF 448

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V ++S CS TG  + G+  FE M  ++++ P  EHY+CLVD+L RAG++ +A K+I  M 
Sbjct: 449 VALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMP 508

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +     S S+WG+LL++C   G   +G++AA++   L+PHN G YVM+SN+YA   MWD
Sbjct: 509 FK----PSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWD 564

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
            + ++RE+MK++G+KK+ GCSW++V
Sbjct: 565 NVDKIREMMKQRGVKKEAGCSWVQV 589



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 13/188 (6%)

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-L 249
           + LL AC    +   G ++ + +I    +L ++  + S LI ++  C  +  A ++F+ +
Sbjct: 142 TDLLHACISAKSLHHGIKICS-LILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDV 200

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
               L  E      +W +M   Y RNG  ++ + +Y  ML +  +P   +    + AC  
Sbjct: 201 TDSSLLTE-----KVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVD 255

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
              +++G      +V   K +     Y+ L+ L   +G  D A K+ + M +R     +V
Sbjct: 256 LKDLRVGRGIHAQIVK-RKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSER-----NV 309

Query: 370 SMWGALLS 377
             W +L+S
Sbjct: 310 VTWNSLIS 317


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 137/412 (33%), Positives = 227/412 (55%), Gaps = 13/412 (3%)

Query: 34  KNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           K L   ++    +  R+ + +N +I+   +NG+    L  F+ M    +  D +   S L
Sbjct: 432 KALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVL 491

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A    +    G ++   + KSG     FVG+AL+D+Y K  +I  A+ + D    K  V
Sbjct: 492 KACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMV 551

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             NA++SG+   +      +    M  +G++ D+FT +A+L  CA L+    G+Q+HA +
Sbjct: 552 SWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQI 611

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           I++   L +DV++ S+L++MY KCG +  +  +F       E   N+D V W +ML  Y 
Sbjct: 612 IKQ--ELQSDVYICSTLVDMYSKCGNMQDSQLMF-------EKAPNRDFVTWNAMLCGYA 662

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +G  +E +KL+E+M +   KP+   FV+V+ AC+H G V  G+ YF+ M+ +Y L+P  
Sbjct: 663 HHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQS 722

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHYSC+VD+L R+G +D+A  L+ +M       +   +W  LLS C   G  E+ + A +
Sbjct: 723 EHYSCMVDILGRSGRIDEALNLVQKM----PFEADAVIWRNLLSVCKIHGNVEVAEKATR 778

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             L+LDP +    V+LSN+YA   MW  + ++R++M+   LKK+ GCSWIE+
Sbjct: 779 ALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIEL 830



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 182/380 (47%), Gaps = 26/380 (6%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           V  H         C ++  S L+  Y  C   K L    +    L  +N + ++ +I+  
Sbjct: 201 VQVHGLVVKFGFDCDVVTGSALLGMYAKC---KRLDDSLSVFSELPEKNWVSWSAMIAGC 257

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +N   +  L+ F  M   G+ +      S   +  ++   R GK++ +H  KS + S +
Sbjct: 258 VQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDI 317

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            VG+A +D+YAK   + DA+ +   +P  +    NA++ GY  +      L+  +L+   
Sbjct: 318 IVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKT 377

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           GL +D  TLS  L ACA +     GRQVH   + K  ++ N + + +++++MYGKC  + 
Sbjct: 378 GLGFDEITLSGALNACASIRGDLEGRQVHGLAV-KSISMSN-ICVANAILDMYGKCKALA 435

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           +A  +F++   R       D V W +++    +NG  +E +  + +M+ +  +PD+  + 
Sbjct: 436 EASDLFDMMERR-------DAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYG 488

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLLCRAGELDKAWKLIN 357
           +V+ AC+    +  G+E     +H   ++ G    S     LVD+ C+ G ++KA    +
Sbjct: 489 SVLKACAGRQALNTGME-----IHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKA----D 539

Query: 358 EMLDRGHGSSSVSMWGALLS 377
           ++ DR    + VS W A++S
Sbjct: 540 KIHDRTEQKTMVS-WNAIIS 558



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 171/356 (48%), Gaps = 17/356 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N VIS F +NG    ++  F  M   G+  D  +L   L A  ++++   G QV
Sbjct: 144 RDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQV 203

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K G+   V  GSAL+ +YAK   + D+  +F E+P KN V  +A+++G  +    
Sbjct: 204 HGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRN 263

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GLEL + M  +G+       ++L R+CA LSA   G+++H++ ++     G+D+ + +
Sbjct: 264 VEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSA--FGSDIIVGT 321

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           + ++MY KCG +  A +V       L       +  + +++  Y R+    + +K ++ +
Sbjct: 322 ATLDMYAKCGRMADAQKV-------LSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLL 374

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  G   DE+     ++AC+    ++  +E  +  VH   ++       C+ + +     
Sbjct: 375 LKTGLGFDEITLSGALNACA---SIRGDLEGRQ--VHGLAVKSISMSNICVANAILDMYG 429

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHN 402
             KA    +++ D      +VS W A+++AC   G  E  L   A+     ++P +
Sbjct: 430 KCKALAEASDLFDMMERRDAVS-WNAIIAACEQNGNEEETLAHFASMIHSRMEPDD 484



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 140/342 (40%), Gaps = 60/342 (17%)

Query: 51  PLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110
           P+P N   +       P   ++TFS +         Y  CS   +         GKQ  A
Sbjct: 29  PIPTNNFSTLAQNQTQPPAKIRTFSHI---------YQECSKQNSLNP------GKQAHA 73

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD------------------------- 145
            +   G+  + FV + L+ +Y K L +  A  +FD                         
Sbjct: 74  RMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDI 133

Query: 146 ------EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
                 E+P ++ V  N+++SG+ +       +++   M   G+ +D  +L+ +L+AC  
Sbjct: 134 ARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGA 193

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L   + G QVH  +++       DV   S+L+ MY KC  +  +L VF+           
Sbjct: 194 LEECDMGVQVHGLVVK--FGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPE------- 244

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           K+ V W++M+    +N    E ++L++ M   G    +  + ++  +C+    ++LG E 
Sbjct: 245 KNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKEL 304

Query: 320 FEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEM 359
                H  K   G +    +  +D+  + G +  A K+++ M
Sbjct: 305 HS---HALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSM 343



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 95/215 (44%), Gaps = 32/215 (14%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T S + + C+  ++   G+Q HA MI   C      F+ + L++MY KC  +  A +VF+
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMI--FCGFEPTTFVSNCLMQMYIKCLYLDYACKVFD 108

Query: 249 -------------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKL 284
                        ++G+   GE++           +DVV W S++  + +NG  ++ I +
Sbjct: 109 KMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDV 168

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M   G   D  +   V+ AC    +  +G++    +V  +  +      S L+ +  
Sbjct: 169 FLEMGRCGVGFDRASLAVVLKACGALEECDMGVQ-VHGLVVKFGFDCDVVTGSALLGMYA 227

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           +   LD +  + +E+ ++   S     W A+++ C
Sbjct: 228 KCKRLDDSLSVFSELPEKNWVS-----WSAMIAGC 257


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/430 (33%), Positives = 242/430 (56%), Gaps = 18/430 (4%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +  QS L+  Y  C   KN     N L+ +   + + +N ++  F R+G    AL+ F  
Sbjct: 300 VYVQSALVDMYAKCGDLKNA---KNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKN 356

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           MH   + +D Y   S L     V  +   K V   + K+G+ +   V +AL+D+YAK   
Sbjct: 357 MHGRNMKIDDYTFPSVLNCC--VVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGD 414

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A  +F+++  K+ +   +L++GY +       L++   M   G++ D F ++++L A
Sbjct: 415 MDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSA 474

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA L+  EFG+QVH   I+        V+  +SL+ MY KCG +  A  +F      +  
Sbjct: 475 CAELTLLEFGKQVHLDFIKSGLRWSQSVY--NSLVAMYAKCGCLDDADAIF------VSM 526

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           ++ KDV+ WT+++  Y +NG  +  +K Y+AM+ +GT+PD + F+ ++ ACSH G V  G
Sbjct: 527 QV-KDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEG 585

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            +YF+ M   Y ++PGPEHY+C++DL  R+G+LD+A +L+++M          ++W +LL
Sbjct: 586 RKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQM----DVKPDATVWKSLL 641

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           SAC      EL + AA    EL+P N   YVMLSN+Y+    W+++ ++R+LMK KG+ K
Sbjct: 642 SACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVK 701

Query: 437 DVGCSWIEVT 446
           + GCSW+E+ 
Sbjct: 702 EPGCSWLEIN 711



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 167/324 (51%), Gaps = 27/324 (8%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           +C+ G  + A   F  M + G     + L S L   +S+   + G+ +   V K+G+  +
Sbjct: 137 YCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGN 196

Query: 121 VFVGSALIDLYAKLLLIHDAELMFD--EIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           VFV + L+D+YAK   + +AE +F   E   KN V   A+++GY +       +E  R M
Sbjct: 197 VFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYM 256

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
            A G++ + +T   +L AC+ + A  FG QVH ++++     G++V++QS+L++MY KCG
Sbjct: 257 HAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS--GFGSNVYVQSALVDMYAKCG 314

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A  +       LE   + DVV W S++  + R+G  +E ++L++ M     K D+ 
Sbjct: 315 DLKNAKNM-------LETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDY 367

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWK 354
            F +V++ C   G +          VH   ++ G E+Y    + LVD+  + G++D A+ 
Sbjct: 368 TFPSVLNCCV-VGSINPK------SVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYT 420

Query: 355 LINEMLDRGHGSSSVSMWGALLSA 378
           +  +ML++      V  W +L++ 
Sbjct: 421 VFEKMLEK-----DVISWTSLVTG 439



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 200/445 (44%), Gaps = 59/445 (13%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  C+       L   L+F + +N + +  +++ + +NG    A++ F +MH  G+  + 
Sbjct: 207 YAKCKCVSEAEFLFKGLEF-DRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQ 265

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           Y   + LTA +SV    FG+QV   + KSG+ S+V+V SAL+D+YAK   + +A+ M + 
Sbjct: 266 YTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLET 325

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +   + V  N+L+ G+    L    L L + M    +  D +T  ++L  C   S     
Sbjct: 326 MEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINP-- 383

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           + VH  +I+      N   + ++L++MY K G +  A  VF       E  + KDV+ WT
Sbjct: 384 KSVHGLIIKT--GFENYKLVSNALVDMYAKTGDMDCAYTVF-------EKMLEKDVISWT 434

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           S++  Y +N   +E +K++  M + G  PD+    +++SAC+    ++ G +     VH 
Sbjct: 435 SLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQ-----VHL 489

Query: 327 YKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEM---------------LDRGHGSS 367
             ++ G       Y+ LV +  + G LD A  +   M                  G G +
Sbjct: 490 DFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRN 549

Query: 368 SVSMWGALLS---------------ACHDCGKFELGKLAAQK-----ALELDPHNVGIYV 407
           S+  + A++S               AC   G  + G+   Q+      ++  P +   Y 
Sbjct: 550 SLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEH---YA 606

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEK 432
            + +L+ +    DE  QL + M  K
Sbjct: 607 CMIDLFGRSGKLDEAKQLLDQMDVK 631



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 133/299 (44%), Gaps = 48/299 (16%)

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS---------- 160
           H T +    S++  + L++  +K   ++DA  +FD++P K+    N ++S          
Sbjct: 55  HTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVE 114

Query: 161 ---------------------GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
                                GYC+        +L R M   G     FTL ++LR C+ 
Sbjct: 115 ARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSS 174

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L   + G  +H ++++       +VF+ + L++MY KC  V++A  +F      LE +  
Sbjct: 175 LGLIQTGEMIHGFVVKN--GFEGNVFVVTGLVDMYAKCKCVSEAEFLFK----GLEFD-R 227

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           K+ VLWT+M+  Y +NG   + ++ +  M   G + ++  F T+++ACS       G + 
Sbjct: 228 KNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQV 287

Query: 320 FEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             ++V   K   G   Y  S LVD+  + G+L  A  ++  M D       V  W +L+
Sbjct: 288 HGFIV---KSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMED-----DDVVSWNSLM 338


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/403 (34%), Positives = 221/403 (54%), Gaps = 15/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + +  R+ + +  +++ F +NG    AL  F  M   GI +D Y   S LTA  ++   
Sbjct: 229 FEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSAL 288

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GKQ+ A++ ++ +  +VFVGSAL+D+Y+K   I  AE  F  +  KN +   AL+ GY
Sbjct: 289 EQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGY 348

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       + +   M   G+D D FTL +++ +CA L++ E G Q H   +     L +
Sbjct: 349 GQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLAL--VSGLMH 406

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE-INKDVVLWTSMLGVYGRNGYFKEV 281
            + + ++L+ +YGKCG +  A        HRL  E +  D V WT+++  Y + G  KE 
Sbjct: 407 YITVSNALVTLYGKCGSIEDA--------HRLFDEMLFHDQVSWTALVTGYAQFGRAKET 458

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           I L+E ML    KPD V F+ V+SACS  G V+ G  YF  M  D+ + P  +HY+C++D
Sbjct: 459 IDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMID 518

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           L  R+G L +A + I +M            WG LLSAC   G  E+G+ AA+  LE+DP 
Sbjct: 519 LYSRSGRLKEAEEFIKQMPMHPDAIG----WGTLLSACRLRGDMEIGQWAAENLLEIDPQ 574

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           N   YV+L +++A    W+++ QLR  M+++ +KK+ GCSWI+
Sbjct: 575 NPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIK 617



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 190/394 (48%), Gaps = 56/394 (14%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG--IFLD 85
           +T  H + L  + +    +  R+ + +N VI+ F   G+   A++ +  +   G  +   
Sbjct: 80  STLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPS 139

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
              + + + A++++ D   G+Q    + + G+  + FVGS L+ +YAK+ LI DA+ +FD
Sbjct: 140 RITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFD 199

Query: 146 EIPVKNSVCANALLSG-------------------------------YCEAKLWAGGLEL 174
           E+  KN V  N +++G                               + +  L +  L  
Sbjct: 200 EMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNF 259

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M   G+  D +T  ++L AC  LSA E G+Q+HAY+IR   +  ++VF+ S+L++MY
Sbjct: 260 FRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIR--THYDDNVFVGSALVDMY 317

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KC  +  A   F     R+     K+++ WT+++  YG+NG  +E ++++  M  +G  
Sbjct: 318 SKCRSIKPAETAFR----RMSC---KNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELD 350
           PD+    +VIS+C++   ++ G ++     H   L  G  HY    + LV L  + G ++
Sbjct: 371 PDDFTLGSVISSCANLASLEEGAQF-----HCLALVSGLMHYITVSNALVTLYGKCGSIE 425

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            A +L +EML     S     W AL++     G+
Sbjct: 426 DAHRLFDEMLFHDQVS-----WTALVTGYAQFGR 454



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 103/234 (44%), Gaps = 28/234 (11%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           ++F  +AL+   A   L+ D + +F  +  +++V  NA+++G+      A  + L   + 
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 180 ALG--LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
             G  +     T+SA++ A + L     GRQ H  ++R     G + F+ S L+ MY K 
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILR--LGFGVNAFVGSPLVGMYAKM 188

Query: 238 GLVTKALQVFN------------------------LAGHRLEGEINKDVVLWTSMLGVYG 273
           GL+  A +VF+                         A    E   ++D + WT+M+  + 
Sbjct: 189 GLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFT 248

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           +NG   + +  +  M   G   D+  F ++++AC     ++ G +   +++  +
Sbjct: 249 QNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTH 302


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 223/398 (56%), Gaps = 18/398 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS +        A++  +FM   G+  + +   S L A   + D    KQ+
Sbjct: 349 RNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQL 405

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + + K G  S VFV SALID+Y+K+  + +A  +F E+   +SV  N++++ + +    
Sbjct: 406 HSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDG 465

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M  +G   D  TL+++LRAC  LS  E GRQ H ++++       D+ + +
Sbjct: 466 DEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK----FDQDLILNN 521

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  A  +FN           KDV+ W++M+    +NG+  E + L+E+M
Sbjct: 522 ALLDMYCKCGSLEDAKFIFNRMA-------KKDVISWSTMIAGLAQNGFSMEALNLFESM 574

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            + G KP+ +  + V+ ACSH G V  G  YF  M + Y ++PG EHY C++DLL RA +
Sbjct: 575 KVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEK 634

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD   KLI+EM    +    V  W  LL AC      +L   AA++ L+LDP + G YV+
Sbjct: 635 LDDMVKLIHEM----NCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVL 690

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           LSN+YA    W+++ ++R  MK++G++K+ GCSWIEV 
Sbjct: 691 LSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVN 728



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 156/314 (49%), Gaps = 20/314 (6%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           A+     M   G++ D+      +    +    R GK+V  H+  +G+    F+ + LI+
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y K  L+ +A+++FD++P +N V    ++S Y  A+L    + L+  M   G+  + FT
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
            S++LRAC  L      +Q+H+++++    L +DVF++S+LI++Y K G + +AL+VF  
Sbjct: 389 FSSVLRACERLYDL---KQLHSWIMK--VGLESDVFVRSALIDVYSKMGELLEALKVF-- 441

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                   +  D V+W S++  + ++    E + LY++M   G   D+    +V+ AC+ 
Sbjct: 442 -----REMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTS 496

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
              ++LG +     VH  K +      + L+D+ C+ G L+ A  + N M         V
Sbjct: 497 LSLLELGRQAH---VHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRM-----AKKDV 548

Query: 370 SMWGALLSACHDCG 383
             W  +++     G
Sbjct: 549 ISWSTMIAGLAQNG 562



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 26/224 (11%)

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           L  +C  +     + ++  M   G+  D  T S L++ C    A   G++VH ++     
Sbjct: 257 LLNHCYRRDLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSN-- 314

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
                 F+ + LI MY K  L+ +A  +F+    R       +VV WT+M+  Y      
Sbjct: 315 GYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPER-------NVVSWTTMISAYSNAQLN 367

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH--- 335
              ++L   M  +G  P+   F +V+ AC     +K         +H + ++ G E    
Sbjct: 368 DRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLK--------QLHSWIMKVGLESDVF 419

Query: 336 -YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
             S L+D+  + GEL +A K+  EM+    G S V  W ++++A
Sbjct: 420 VRSALIDVYSKMGELLEALKVFREMMT---GDSVV--WNSIIAA 458


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 227/404 (56%), Gaps = 14/404 (3%)

Query: 45  FLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           F+  R   P+N +IS + R+G    AL+ F+ M  + I+LD Y  CS   A  ++K    
Sbjct: 334 FITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSL 393

Query: 105 GKQVQAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           GK+V A   KSG  ++ V + +A+ + YAK   + D   +F+ +  ++ +   +L++ Y 
Sbjct: 394 GKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYS 453

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           +   W   +E+   M A G+  + FT S++L +CA L   E+G+QVH  + +    L  D
Sbjct: 454 QCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICK--VGLDMD 511

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
             ++S+L++MY KCG +  A +VFN    R+    N D V WT+++  + ++G   + ++
Sbjct: 512 KCIESALVDMYAKCGCLGDAKKVFN----RIS---NADTVSWTAIIAGHAQHGIVDDALQ 564

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           L+  M+  G +P+ V F+ V+ ACSH G V+ G++YF+ M   Y L P  EHY+C+VDLL
Sbjct: 565 LFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLL 624

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            R G L+ A + I+ M        +  +W  LL AC   G  ELG+LAAQK L     N 
Sbjct: 625 SRVGHLNDAMEFISRM----PVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENS 680

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             YV+LSN Y +   + +   LR LMKE+G+KK+ GCSWI V G
Sbjct: 681 ATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNG 724



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 180/399 (45%), Gaps = 25/399 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN   + V+I+    NG  L   + F  M   GIF D +A    L     +     G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
             V A +   G+ S  FV +AL+++YAKL  I D+  +F+ +   N V  NA+++G+   
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L+    +L   M   G+  D  T   + +A   L      ++V  Y +     + ++  
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALE--LGVDSNTL 308

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI+M  KCG + +A  +FN   H +    N     W +M+  Y R+G+ ++ ++L+
Sbjct: 309 VGTALIDMNSKCGSLQEARSIFN--SHFITCRFNAP---WNAMISGYLRSGFNEKALELF 363

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSCLVDLLC 344
             M  N    D   + +V +A +    + LG +     VH   ++ G E +Y  + + + 
Sbjct: 364 AKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKK-----VHARAIKSGLEVNYVSISNAVA 418

Query: 345 RA----GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALEL 398
            A    G L+   K+ N M DR   S     W +L++A   C +++  +   +  +A  +
Sbjct: 419 NAYAKCGSLEDVRKVFNRMEDRDLIS-----WTSLVTAYSQCSEWDKAIEIFSNMRAEGI 473

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
            P+      +L +  A  C+ +   Q+  ++ + GL  D
Sbjct: 474 APNQFTFSSVLVSC-ANLCLLEYGQQVHGIICKVGLDMD 511



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 121/266 (45%), Gaps = 23/266 (8%)

Query: 101 DARFGKQ---VQAHVTKSGWLS--SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
           DARF KQ   V   + KS + +  S+ + + +   Y+K   I  A  +FD++  +N+   
Sbjct: 80  DARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSW 139

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
             L++G  E  L+  G E    M + G+  D F  S +L+ C GL + E G  VHA ++ 
Sbjct: 140 TVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVI 199

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
           +     +  F+ ++L+ MY K   +  + +VFN        E+N  VV W +M+  +  N
Sbjct: 200 R--GFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM-----TEVN--VVSWNAMITGFTSN 250

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
             + +   L+  M+  G  PD   F+ V  A      V    E     V  Y LE G + 
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE-----VSGYALELGVDS 305

Query: 336 Y----SCLVDLLCRAGELDKAWKLIN 357
                + L+D+  + G L +A  + N
Sbjct: 306 NTLVGTALIDMNSKCGSLQEARSIFN 331



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 83/192 (43%), Gaps = 21/192 (10%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L  LLR C      +  + VH ++++   +  + + + + +   Y KC  +  A ++F+ 
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
              R       +   WT ++     NG F +  + +  M   G  PD+ A+  ++  C  
Sbjct: 131 MSQR-------NTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIG 183

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHG 365
              ++LG      MVH   +  G   +    + L+++  +  E++ ++K+ N M +    
Sbjct: 184 LDSIELG-----NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE---- 234

Query: 366 SSSVSMWGALLS 377
             +V  W A+++
Sbjct: 235 -VNVVSWNAMIT 245


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/404 (33%), Positives = 240/404 (59%), Gaps = 15/404 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+ L  ++ + +  +I+ + ++     AL+TF  M + GI+ D   L S+++A   +K  
Sbjct: 403 LEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAM 462

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G+Q+ + V  SG+ + V + +AL++LYA+     +A  +F+ I  K+ +  N ++SG+
Sbjct: 463 RQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGF 522

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            ++ L+   LE+   M   G+ Y+ FT  + + A A L+  + G+Q+HA +I+  C    
Sbjct: 523 AQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSET 582

Query: 223 DVFMQSSLIEMYGKCGLVTKA-LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           +V   ++LI +YGKCG +  A +Q F ++         ++ V W +++    ++G+  E 
Sbjct: 583 EV--ANALISLYGKCGSIEDAKMQFFEMS--------ERNHVSWNTIITSCSQHGWGLEA 632

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           + L++ M   G KP++V F+ V++ACSH G V+ G+ YF+ M  ++ + P P+HY+C+VD
Sbjct: 633 LDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVD 692

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           +L RAG+LD+A K + EM      S++  +W  LLSAC      E+G+LAA+  LEL+PH
Sbjct: 693 ILGRAGQLDRARKFVEEM----PVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPH 748

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +   YV+LSN YA    W     +R++MK++G++K+ G SWIEV
Sbjct: 749 DSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEV 792



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 185/371 (49%), Gaps = 25/371 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+ + +  ++S + RNG    A+  +  MH  G+    Y L S L+A T       G
Sbjct: 103 LSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQG 162

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + V A V K G  S   VG+ALI LY +   +  AE +F E+P  + V  N L+S + + 
Sbjct: 163 RLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQC 222

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 LE+   M   G   D  T+++LL ACA +     G+Q+H+Y+++    +  D  
Sbjct: 223 GNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLK--AGMSPDYI 280

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           ++ SL+++Y KCG++ +AL++F  +G R       +VVLW  ML  YG+     +   L+
Sbjct: 281 IEGSLLDLYVKCGVIVEALEIFK-SGDR------TNVVLWNLMLVAYGQISDLAKSFDLF 333

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVD 341
             M+  G +P+E  +  ++  C++ G++ LG +     +H   ++ G E        L+D
Sbjct: 334 CQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ-----IHLLSIKTGFESDMYVSGVLID 388

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELD 399
           +  + G LDKA +++ E+L+    +  V  W ++++    H+  K  L      +   + 
Sbjct: 389 MYSKYGWLDKARRIL-EVLE----AKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIW 443

Query: 400 PHNVGIYVMLS 410
           P N+G+   +S
Sbjct: 444 PDNIGLASAIS 454



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/426 (21%), Positives = 188/426 (44%), Gaps = 34/426 (7%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFL---NPRNPLPFNVVISDFCRNGSPLYALKTF 74
           I +  L+  Y  C      G +   L+     +  N + +N+++  + +      +   F
Sbjct: 280 IIEGSLLDLYVKC------GVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLF 333

Query: 75  SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
             M   G+  + +     L   T   +   G+Q+     K+G+ S ++V   LID+Y+K 
Sbjct: 334 CQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKY 393

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
             +  A  + + +  K+ V   ++++GY + +     LE  + M   G+  D+  L++ +
Sbjct: 394 GWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAI 453

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            ACAG+ A   G+Q+H+ +         DV + ++L+ +Y +CG   +A  +F    H  
Sbjct: 454 SACAGIKAMRQGQQIHSRVY--VSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEH-- 509

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                KD + W  M+  + ++G ++E ++++  M   G K +   FV+ ISA ++   +K
Sbjct: 510 -----KDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIK 564

Query: 315 LGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
            G +     +H   ++ G     E  + L+ L  + G ++ A     EM +R H S    
Sbjct: 565 QGKQ-----IHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVS---- 615

Query: 371 MWGALLSAC--HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLREL 428
            W  ++++C  H  G   L      K   L P++V    +L+       + + +G  + +
Sbjct: 616 -WNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSM 674

Query: 429 MKEKGL 434
             E G+
Sbjct: 675 SSEHGI 680



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 172/383 (44%), Gaps = 59/383 (15%)

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           C+      SVK       + A     G       G+ LIDLYAK  L+  A  +F+++  
Sbjct: 46  CALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSA 105

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
           +++V   A+LSGY    L    + L   M   G+    + LS++L AC   +  E GR V
Sbjct: 106 RDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLV 165

Query: 210 HAYMIRK-CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           HA + ++  C   ++  + ++LI +Y + G ++ A +VF+   +        D V + ++
Sbjct: 166 HAQVYKQGSC---SETVVGNALIALYLRFGSLSLAERVFSEMPY-------CDRVTFNTL 215

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  + + G  +  ++++E M ++G  PD V   ++++AC+  G +  G +     +H Y 
Sbjct: 216 ISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQ-----LHSYL 270

Query: 329 LEPG--PEHY--SCLVDLLCRAG-------------------------------ELDKAW 353
           L+ G  P++     L+DL  + G                               +L K++
Sbjct: 271 LKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSF 330

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK----LAAQKALELDPHNVGIYVML 409
            L  +M+  G   +  + +  LL  C   G+  LG+    L+ +   E D +  G+ +  
Sbjct: 331 DLFCQMVAAGVRPNEFT-YPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLI-- 387

Query: 410 SNLYAKFCMWDEIGQLRELMKEK 432
            ++Y+K+   D+  ++ E+++ K
Sbjct: 388 -DMYSKYGWLDKARRILEVLEAK 409


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 222/398 (55%), Gaps = 17/398 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R    +  +++ + R G     L+ F  M   GI L  +    +L A  S+ +   G+Q+
Sbjct: 139 RTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACASIANLCVGQQL 198

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                +  + +++ V ++LID+Y     + DA  +FDEIP +N V  N +++ Y +    
Sbjct: 199 HVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAWYSQCN-- 256

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L  ++L+  + L  + FTL+++  ACAGL++  FG+QVH   +R+  N G D+ M +
Sbjct: 257 --HLMALQLLREMNLQPNCFTLTSITSACAGLASLRFGQQVHGAALRR--NYGKDLQMCN 312

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  A ++FN+  +       KD + WTSM+  YG NGY  E I+L+ +M
Sbjct: 313 ALVDMYSKCGSIANAKKMFNMMDY-------KDKLSWTSMITGYGMNGYANESIQLFTSM 365

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           +  G  PD V F+ +I AC+H G V  G  +F  M  +Y L+P  E Y C+ +LL RAG 
Sbjct: 366 IHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGR 425

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A+ LI+ M      +   ++WGALL AC      ELG+LAA+K +E++P     YV+
Sbjct: 426 LREAFDLIHRM----PFAPDETVWGALLGACKMHKNVELGRLAARKIIEINPDRAKTYVL 481

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           L+N+YA    W E    R L++  G +K+ G SWI+VT
Sbjct: 482 LANIYAAGNKWGEYADTRRLLRGIGSRKEAGTSWIDVT 519



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 144/321 (44%), Gaps = 28/321 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA--STSVKDARFGK 106
           R+ + +  ++S +  NG   YAL  F  M   G+  + + L S LTA    +        
Sbjct: 32  RDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNEFTLSSVLTACRGGAADGGCEPS 91

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKL---LLIHDAELMFDEIPVKNSVCA-NALLSGY 162
            + A   + G     +V +ALI+ YA     + + ++  +FD +    +  +  ++++GY
Sbjct: 92  SLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGVEESRKLFDALGSGRTAASWTSMVAGY 151

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                   GL+L + M   G++   FT S  L ACA ++    G+Q+H   +RK  N   
Sbjct: 152 SRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACASIANLCVGQQLHVLCLRKAFNA-- 209

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           ++ + +SLI+MY  C  +  A ++F+    R       ++V W +M+  Y +  +   + 
Sbjct: 210 NLTVANSLIDMYCSCANLLDARRLFDEIPER-------NLVTWNTMIAWYSQCNHLMALQ 262

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP--GPEHYSC-- 338
            L E  L    +P+     ++ SAC+    ++ G +     VH   L    G +   C  
Sbjct: 263 LLREMNL----QPNCFTLTSITSACAGLASLRFGQQ-----VHGAALRRNYGKDLQMCNA 313

Query: 339 LVDLLCRAGELDKAWKLINEM 359
           LVD+  + G +  A K+ N M
Sbjct: 314 LVDMYSKCGSIANAKKMFNMM 334



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 16/232 (6%)

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A  +FDE+P ++ V   A+LSGY      +  L+L R M A G+  + FTLS++L A
Sbjct: 19  LRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNEFTLSSVLTA 78

Query: 197 CAGLSAAEFG---RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC--GL-VTKALQVFNLA 250
           C G  AA+ G     +HA  +R+   + +  ++ ++LIE Y  C  G+ V ++ ++F+  
Sbjct: 79  CRG-GAADGGCEPSSLHAVAVRR--GVDHMPYVVNALIEAYASCEEGVGVEESRKLFDAL 135

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
           G        +    WTSM+  Y R G  +  ++L++ M+ +G +         + AC+  
Sbjct: 136 GS------GRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACASI 189

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
             + +G +    +             + L+D+ C    L  A +L +E+ +R
Sbjct: 190 ANLCVG-QQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPER 240


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 141/399 (35%), Positives = 220/399 (55%), Gaps = 14/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + F  +I  +  +   L A++ F  +H   +  + +   S L A  +++    G Q+
Sbjct: 102 RNTISFVTLIQGYAESVRFLEAIELFVRLH-REVLPNQFTFASVLQACATMEGLNLGNQI 160

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             HV K G  S VFV +AL+D+YAK   + ++  +F E P +N V  N ++ G+ +    
Sbjct: 161 HCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDG 220

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M    +     T S+ LRACA L+A E G Q+H+  ++       D+ + +
Sbjct: 221 EKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKT--TFDKDIVVTN 278

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG +  A  VF+L          +D V W +M+  Y  +G  +E +++++ M
Sbjct: 279 ALIDMYAKCGSIKDARLVFDLMN-------KQDEVSWNAMISGYSMHGLGREALRIFDKM 331

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                KPD++ FV V+SAC++ G +  G  YF  M+ D+ +EP  EHY+C+V LL R G 
Sbjct: 332 QETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGH 391

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LDKA KLI+E+        SV +W ALL AC      ELG+++AQ+ LE++P +   +V+
Sbjct: 392 LDKAVKLIDEI----PFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVL 447

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSN+YA    WD +  +R+ MK KG+KK+ G SWIE  G
Sbjct: 448 LSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQG 486



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 178/365 (48%), Gaps = 30/365 (8%)

Query: 55  NVVISDFCRNGSPLYALK-TFSFM-HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           N  +  F R G  + + K T  F+ HV     +++A  ++L       +   GK +   +
Sbjct: 5   NNFLIQFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEI 64

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
            K G    +F  + L+++Y K   + DA  +FDE+P +N++    L+ GY E+  +   +
Sbjct: 65  LKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAI 124

Query: 173 EL-VRL----MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           EL VRL    +P      + FT +++L+ACA +     G Q+H ++I+    L +DVF+ 
Sbjct: 125 ELFVRLHREVLP------NQFTFASVLQACATMEGLNLGNQIHCHVIK--IGLHSDVFVS 176

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L+++Y KCG +  ++++F  + HR +       V W +++  + + G  ++ ++L+  
Sbjct: 177 NALMDVYAKCGRMENSMELFAESPHRND-------VTWNTVIVGHVQLGDGEKALRLFLN 229

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           ML    +  EV + + + AC+    ++ G++     V     +      + L+D+  + G
Sbjct: 230 MLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTV-KTTFDKDIVVTNALIDMYAKCG 288

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGI 405
            +  A +L+ +++++    S    W A++S  + H  G+  L      +  E+ P  +  
Sbjct: 289 SIKDA-RLVFDLMNKQDEVS----WNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTF 343

Query: 406 YVMLS 410
             +LS
Sbjct: 344 VGVLS 348


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 147/397 (37%), Positives = 229/397 (57%), Gaps = 14/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I+   +NGS   AL+ F  + + GI LD   + S L A + +K     K++
Sbjct: 447 KDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEI 506

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +++ + G LS + + + ++D+Y +   +  A  MF+ I  K+ V   +++S Y    L 
Sbjct: 507 HSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLA 565

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL  LM   G++ D  +L ++L A A LSA + G+++H ++IRK   L     + S
Sbjct: 566 NEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGS--LAS 623

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY +CG + K+  VFN          NKD+VLWTSM+  YG +G  +  I L+  M
Sbjct: 624 TLVDMYARCGTLEKSRNVFNFIR-------NKDLVLWTSMINAYGMHGCGRAAIDLFRRM 676

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                 PD +AFV V+ ACSH+G +  G  + E M ++Y+LEP PEHY+CLVDLL RA  
Sbjct: 677 EDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANH 736

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A++ +  M        +  +W ALL AC      ELG++AAQK LE+DP N G YV+
Sbjct: 737 LEEAYQFVKGM----EVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVL 792

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +SN+Y+    W ++  +R  MK  GLKK+ GCSWIEV
Sbjct: 793 VSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEV 829



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 195/376 (51%), Gaps = 18/376 (4%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G   N    ++  + + +N ++S F +NG    AL+ +  M   G   D  A+ S + A
Sbjct: 333 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAA 392

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
           S    +   G Q+ A+  K+G  S + VG++L+D+YAK   +   + +FD++P K+ V  
Sbjct: 393 SARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSW 452

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
             +++G+ +    +  LEL R +   G+D D   +S++L AC+GL      +++H+Y+IR
Sbjct: 453 TTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR 512

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
           K     +D+ +Q+ ++++YG+CG V  A ++F L          KDVV WTSM+  Y  N
Sbjct: 513 KGL---SDLVLQNGIVDVYGECGNVDYAARMFELIEF-------KDVVSWTSMISCYVHN 562

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G   E ++L+  M   G +PD ++ V+++SA +    +K G E   +++    +  G   
Sbjct: 563 GLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG-SL 621

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCGKFELGKLAAQ 393
            S LVD+  R G L+K+  + N + ++      + +W ++++A   H CG+  +      
Sbjct: 622 ASTLVDMYARCGTLEKSRNVFNFIRNK-----DLVLWTSMINAYGMHGCGRAAIDLFRRM 676

Query: 394 KALELDPHNVGIYVML 409
           +   + P ++    +L
Sbjct: 677 EDESIAPDHIAFVAVL 692



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 163/336 (48%), Gaps = 25/336 (7%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVV 57
            VHAH   +  L    +   +RL+  Y  C      G L +  K  +    +    +N +
Sbjct: 99  QVHAHMITSNALFNS-VFLSTRLVFMYGKC------GCLVDAEKLFDGMPHKTIFTWNAM 151

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I  +  NG PL +L+ +  M V GI LD       L A   +KD R+G +V     K G+
Sbjct: 152 IGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGY 211

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA-NALLSGYCEAKLWAGGLELVR 176
           +S VFV ++++ +Y K   ++ A  +FD +P K  V + N+++S Y         L L  
Sbjct: 212 VSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFG 271

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M    L  + +T  A L+AC   S  + G  +HA +++    +  +VF+ ++LI MY +
Sbjct: 272 EMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI--NVFVANALIAMYAR 329

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
            G + +A  +F    + ++   + D + W SML  + +NG + E ++ Y  M   G KPD
Sbjct: 330 FGKMGEAANIF----YNMD---DWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPD 382

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            VA +++I+A + +G    G++     +H Y ++ G
Sbjct: 383 LVAVISIIAASARSGNTLHGMQ-----IHAYAMKNG 413



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 159/340 (46%), Gaps = 28/340 (8%)

Query: 14  ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKT 73
           + ++   + ++  YT C        L +  +     + + +N +IS +  NG  + AL+ 
Sbjct: 212 VSIVFVANSIVGMYTKCNDLNGARQLFD--RMPEKEDVVSWNSMISAYSSNGQSIEALRL 269

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ---VQAHVTKSGWLSSVFVGSALIDL 130
           F  M    +  +TY   ++L A    +D+ F KQ   + A V KS +  +VFV +ALI +
Sbjct: 270 FGEMQKASLAPNTYTFVAALQA---CEDSSFIKQGMFIHATVLKSSYYINVFVANALIAM 326

Query: 131 YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
           YA+   + +A  +F  +   +++  N++LSG+ +  L+   L+    M   G   D   +
Sbjct: 327 YARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAV 386

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
            +++ A A       G Q+HAY ++    L +D+ + +SL++MY K   +     +F+  
Sbjct: 387 ISIIAASARSGNTLHGMQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKM 444

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
                   +KDVV WT+++  + +NG     ++L+  + + G   D +   +++ ACS  
Sbjct: 445 P-------DKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGL 497

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
             +    E     +H Y +  G      L DL+ + G +D
Sbjct: 498 KLISSVKE-----IHSYIIRKG------LSDLVLQNGIVD 526



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 21/198 (10%)

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           S++L  C    A   G+QVHA+MI     L N VF+ + L+ MYGKCG +  A ++F   
Sbjct: 82  SSVLELCGSKKALSEGQQVHAHMITSNA-LFNSVFLSTRLVFMYGKCGCLVDAEKLF--- 137

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
               +G  +K +  W +M+G Y  NG     ++LY  M ++G   D   F  ++ AC   
Sbjct: 138 ----DGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLL 193

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
              + G E     VH   ++ G        + +V +  +  +L+ A +L + M ++    
Sbjct: 194 KDRRYGAE-----VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEK---- 244

Query: 367 SSVSMWGALLSACHDCGK 384
             V  W +++SA    G+
Sbjct: 245 EDVVSWNSMISAYSSNGQ 262



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 96/207 (46%), Gaps = 6/207 (2%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H++    GL     ++ Q+ ++  Y  C    N+       + +  ++ + +  +IS +
Sbjct: 506 IHSYIIRKGL---SDLVLQNGIVDVYGEC---GNVDYAARMFELIEFKDVVSWTSMISCY 559

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             NG    AL+ F  M   G+  D+ +L S L+A+ S+   + GK++   + + G++   
Sbjct: 560 VHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG 619

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            + S L+D+YA+   +  +  +F+ I  K+ V   ++++ Y         ++L R M   
Sbjct: 620 SLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDE 679

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQ 208
            +  DH    A+L AC+       GR+
Sbjct: 680 SIAPDHIAFVAVLYACSHSGLMNEGRR 706


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 140/396 (35%), Positives = 229/396 (57%), Gaps = 16/396 (4%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG-KQVQA 110
           + +N VI    +N     ALK    M   G   + + + SS+  + + K A     Q+ A
Sbjct: 110 VSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTI-SSVLCNCAFKCAILECMQLHA 168

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
              K+   S+ FVG+AL+ +YAK   I DA  MF+ +P KN+V  +++++GY +      
Sbjct: 169 FSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEE 228

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            L + R    +G D D F +S+ + ACAGL+    G+QVHA  I      G+++++ SSL
Sbjct: 229 ALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHA--ISHKSGFGSNIYVSSSL 286

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           I+MY KCG + +A  VF       +G +  + +VLW +M+  + R+    E + L+E M 
Sbjct: 287 IDMYAKCGCIREAYLVF-------QGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQ 339

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
             G  PD+V +V V++ACSH G  + G +YF+ MV  + L P   HYSC++D+L RAG +
Sbjct: 340 QRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLV 399

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            KA+ LI    +R   +++ SMWG+LL++C   G  E  ++AA+   E++P+N G +++L
Sbjct: 400 HKAYDLI----ERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILL 455

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +N+YA    WDE+ + R+L++E  ++K+ G SWIE+
Sbjct: 456 ANIYAANKKWDEVARARKLLRETDVRKERGTSWIEI 491



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 133/275 (48%), Gaps = 18/275 (6%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+   A + + G    +   + LI++Y+K  L+  A   F+E+PVK+ V  N ++    +
Sbjct: 62  GRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQ 121

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L+L+  M   G  ++ FT+S++L  CA   A     Q+HA+ I+    + ++ 
Sbjct: 122 NAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAA--IDSNC 179

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++L+ +Y KC  +  A Q+F       E    K+ V W+SM+  Y +NG+ +E + +
Sbjct: 180 FVGTALLHVYAKCSSIKDASQMF-------ESMPEKNAVTWSSMMAGYVQNGFHEEALLI 232

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDL 342
           +    + G   D     + +SAC+    +   IE  +     +K   G   Y  S L+D+
Sbjct: 233 FRNAQLMGFDQDPFMISSAVSACAGLATL---IEGKQVHAISHKSGFGSNIYVSSSLIDM 289

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             + G + +A+ +   +L+      S+ +W A++S
Sbjct: 290 YAKCGCIREAYLVFQGVLE----VRSIVLWNAMIS 320



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 17/289 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA   +  +   C +   + L+  Y  C   K+   +    + +  +N + ++ +++ 
Sbjct: 165 QLHAFSIKAAIDSNCFV--GTALLHVYAKCSSIKDASQM---FESMPEKNAVTWSSMMAG 219

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +NG    AL  F    + G   D + + S+++A   +     GKQV A   KSG+ S+
Sbjct: 220 YVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSN 279

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEI-PVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           ++V S+LID+YAK   I +A L+F  +  V++ V  NA++SG+         + L   M 
Sbjct: 280 IYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQ 339

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
             G   D  T   +L AC+ +   E G++    M+R+  NL   V   S +I++ G+ GL
Sbjct: 340 QRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQ-HNLSPSVLHYSCMIDILGRAGL 398

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLG---VYGRNGYFKEVIKLY 285
           V KA  +            N    +W S+L    +YG N  F E+   Y
Sbjct: 399 VHKAYDLIE------RMPFNATSSMWGSLLASCKIYG-NIEFAEIAAKY 440



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 9/120 (7%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
            L  LL+ CA   ++  GR  HA +IR    L  D+   + LI MY KC LV  A + FN
Sbjct: 45  NLHYLLQLCAKTRSSMGGRACHAQIIR--IGLEMDILTSNMLINMYSKCSLVDSARKKFN 102

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                 E  + K +V W +++G   +N   +E +KL   M   GT  +E    +V+  C+
Sbjct: 103 ------EMPV-KSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCA 155


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/404 (35%), Positives = 227/404 (56%), Gaps = 14/404 (3%)

Query: 45  FLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           F+  R   P+N +IS + R+G    AL+ F+ M  + I+LD Y  CS   A  ++K    
Sbjct: 334 FITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSL 393

Query: 105 GKQVQAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           GK+V A   KSG  ++ V + +A+ + YAK   + D   +F+ +  ++ +   +L++ Y 
Sbjct: 394 GKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYS 453

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           +   W   +E+   M A G+  + FT S++L +CA L   E+G+QVH  + +    L  D
Sbjct: 454 QCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICK--VGLDMD 511

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
             ++S+L++MY KCG +  A +VFN    R+    N D V WT+++  + ++G   + ++
Sbjct: 512 KCIESALVDMYAKCGCLGDAKKVFN----RIS---NADTVSWTAIIAGHAQHGIVDDALQ 564

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           L+  M+  G +P+ V F+ V+ ACSH G V+ G++YF+ M   Y L P  EHY+C+VDLL
Sbjct: 565 LFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLL 624

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            R G L+ A + I+ M        +  +W  LL AC   G  ELG+LAAQK L     N 
Sbjct: 625 SRVGHLNDAMEFISRM----PVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENS 680

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             YV+LSN Y +   + +   LR +MKE+G+KK+ GCSWI V G
Sbjct: 681 ATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNG 724



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 180/399 (45%), Gaps = 25/399 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN   + V+I+    NG  L   + F  M   GIF D +A    L     +     G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
             V A +   G+ S  FV +AL+++YAKL  I D+  +F+ +   N V  NA+++G+   
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L+    +L   M   G+  D  T   + +A   L      ++V  Y +     + ++  
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALE--LGVDSNTL 308

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI+M  KCG + +A  +FN   H +    N     W +M+  Y R+G+ ++ ++L+
Sbjct: 309 VGTALIDMNSKCGSLQEARSIFN--SHFITCRFNAP---WNAMISGYLRSGFNEKALELF 363

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSCLVDLLC 344
             M  N    D   + +V +A +    + LG +     VH   ++ G E +Y  + + + 
Sbjct: 364 AKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKK-----VHARAIKSGLEVNYVSISNAVA 418

Query: 345 RA----GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALEL 398
            A    G L+   K+ N M DR   S     W +L++A   C +++  +   +  +A  +
Sbjct: 419 NAYAKCGSLEDVRKVFNRMEDRDLIS-----WTSLVTAYSQCSEWDKAIEIFSNMRAEGI 473

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
            P+      +L +  A  C+ +   Q+  ++ + GL  D
Sbjct: 474 APNQFTFSSVLVSC-ANLCLLEYGQQVHGIICKVGLDMD 511



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 121/266 (45%), Gaps = 23/266 (8%)

Query: 101 DARFGKQ---VQAHVTKSGWLS--SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
           DARF KQ   V   + KS + +  S+ + + +   Y+K   I  A  +FD++  +N+   
Sbjct: 80  DARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSW 139

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
             L++G  E  L+  G E    M + G+  D F  S +L+ C GL + E G  VHA ++ 
Sbjct: 140 TVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVI 199

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
           +     +  F+ ++L+ MY K   +  + +VFN        E+N  VV W +M+  +  N
Sbjct: 200 R--GFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM-----TEVN--VVSWNAMITGFTSN 250

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
             + +   L+  M+  G  PD   F+ V  A      V    E     V  Y LE G + 
Sbjct: 251 DLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE-----VSGYALELGVDS 305

Query: 336 Y----SCLVDLLCRAGELDKAWKLIN 357
                + L+D+  + G L +A  + N
Sbjct: 306 NTLVGTALIDMNSKCGSLQEARSIFN 331



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/192 (19%), Positives = 83/192 (43%), Gaps = 21/192 (10%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L  LLR C      +  + VH ++++   +  + + + + +   Y KC  +  A ++F+ 
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
              R       +   WT ++     NG F +  + +  M   G  PD+ A+  ++  C  
Sbjct: 131 MSQR-------NTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIG 183

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHG 365
              ++LG      MVH   +  G   +    + L+++  +  E++ ++K+ N M +    
Sbjct: 184 LDSIELG-----NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE---- 234

Query: 366 SSSVSMWGALLS 377
             +V  W A+++
Sbjct: 235 -VNVVSWNAMIT 245


>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
          Length = 596

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 243/457 (53%), Gaps = 56/457 (12%)

Query: 34  KNLGTLTNCLKFLN-----PRNPLPFNVVISDFCRNGSPLYALKTFSFMH------VHGI 82
           +  GTL + L+ L+      RN + +N VIS   R+G    AL+ F+ +          +
Sbjct: 107 RGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQV 166

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
            +D + + S+ +A   ++DAR  +++   V  SG   +V + +A++D Y+K   + DA  
Sbjct: 167 AIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARG 226

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL--------------------- 181
           +FD++ +++SV   ++++GYC A +    +++  +MPA                      
Sbjct: 227 LFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIA 286

Query: 182 ----------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND---VFMQS 228
                     G+    F L + L ACA +     G++VH +++R+  ++G+D   VF+ +
Sbjct: 287 LELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRR--SIGSDPFNVFIHN 344

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG +  A+ VF+    R+   + +D++ W SM+  +  NG  K+ + ++E M
Sbjct: 345 ALIDMYSKCGDMVAAMAVFD----RM---LERDIISWNSMVTGFSHNGQGKQSLAVFERM 397

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L +  +P  V F+ V++ACSH G V  G    E M  D+ +EP  EHY+  +D L R  +
Sbjct: 398 LKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAEHYAAFIDALGRNHQ 456

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A + I  +  +  G  +   WGALL ACH  G  E+ +  A+   +L+P N G YVM
Sbjct: 457 LEEASEFIKGLSSK-IGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVM 515

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+Y+    WD+  Q+R LMK KGL+KD   SWIEV
Sbjct: 516 LSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSWIEV 552



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 133/331 (40%), Gaps = 78/331 (23%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G  V A + K+       + + L+ LYA L     +   FD++P KN+   N+LL+  
Sbjct: 46  RLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAAL 105

Query: 163 CEAK-LWAGGLELVRLMP------------------------------------ALG--- 182
              +      L L+  MP                                     LG   
Sbjct: 106 ARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQ 165

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D FT+ +   ACAGL  A   R++H  ++     +   V M +++++ Y K G V  
Sbjct: 166 VAIDRFTVVSAASACAGLRDARHLRELHGAVV--VSGMEVTVIMANAMVDAYSKAGRVED 223

Query: 243 ALQVFN-------------LAGH----RLEGEIN-------KDVVLWTSMLGVYGRNGYF 278
           A  +F+             +AG+     L+  +        +D + WT+++  + +NG  
Sbjct: 224 ARGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEE 283

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP--GPEHY 336
           +  ++L+E M   G  P   A V+ + AC+  G V  G E     VH + L    G + +
Sbjct: 284 EIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKE-----VHGFILRRSIGSDPF 338

Query: 337 -----SCLVDLLCRAGELDKAWKLINEMLDR 362
                + L+D+  + G++  A  + + ML+R
Sbjct: 339 NVFIHNALIDMYSKCGDMVAAMAVFDRMLER 369


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 150/434 (34%), Positives = 237/434 (54%), Gaps = 21/434 (4%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKF--LNPRNPLPFNVVISDFCRNGSPLYALKTF 74
           ++  + L+  Y  C+H      +  C  F  +  RN + ++ +I  F        A   F
Sbjct: 239 VLIGTALLDMYAKCKH-----LVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLF 293

Query: 75  SFMHVHGI-FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
             M V G+ FL   ++ S+L    S+ D R G Q+ A + KSG  + +  G++L+ +YAK
Sbjct: 294 KDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAK 353

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
             LI++A ++FDEI +K+++   ALLSGY +         + + M A  +  D  T+ +L
Sbjct: 354 AGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSL 413

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           + AC+ L+A + GR  H  +I +   L  +  + +SLI+MY KCG +  + QVF+    R
Sbjct: 414 IPACSHLAALQHGRCSHGSVIIR--GLALETSICNSLIDMYAKCGRIDLSRQVFDKMPAR 471

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  D+V W +M+  YG +G  KE   L+ +M   G +PD+V F+ +I+ACSH+G V
Sbjct: 472 -------DIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLV 524

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G  +F+ M H Y + P  EHY C+VDLL R G LD+A++ I  M  +    + V +WG
Sbjct: 525 TEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLK----ADVRVWG 580

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL AC      +LGK  ++   +L P   G +V+LSN+++    +DE  ++R + K KG
Sbjct: 581 ALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKG 640

Query: 434 LKKDVGCSWIEVTG 447
            KK  GCSWIE+ G
Sbjct: 641 FKKSPGCSWIEING 654



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 162/353 (45%), Gaps = 20/353 (5%)

Query: 49  RNPLP----FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           R P P    +N +I  +   G    A+  +  M    +  + Y     L A +++ D   
Sbjct: 58  RIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCA 117

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+ + AH    G  + +FV +ALIDLY +      A  +F ++P+++ V  NA+L+GY  
Sbjct: 118 GRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYAN 177

Query: 165 AKLWAGGL-ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
             ++   +  L+ +    GL  +  TL +LL   A   A   G  VHAY +R   +   +
Sbjct: 178 HGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEE 237

Query: 224 -VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            V + ++L++MY KC  +  A +VF+       G   ++ V W++++G +       E  
Sbjct: 238 QVLIGTALLDMYAKCKHLVYACRVFH-------GMTVRNEVTWSALIGGFVLCDRMTEAF 290

Query: 283 KLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
            L++ ML+ G       +  + +  C+    +++G +    ++    +       + L+ 
Sbjct: 291 NLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQ-LHALLAKSGIHADLTAGNSLLS 349

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
           +  +AG +++A  L +E+  +     ++S +GALLS     GK E   L  +K
Sbjct: 350 MYAKAGLINEATMLFDEIAIK----DTIS-YGALLSGYVQNGKAEEAFLVFKK 397



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 14/241 (5%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD IP  ++   NAL+  Y     +   ++L R M    +  + +T   +L+AC+ 
Sbjct: 52  ARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSA 111

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L+    GR +HA+       L  D+F+ ++LI++Y +C     A  VF     R      
Sbjct: 112 LADLCAGRTIHAHA--AAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMR------ 163

Query: 260 KDVVLWTSMLGVYGRNG-YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            DVV W +ML  Y  +G Y   +  L +     G +P+    V+++   +  G +  G  
Sbjct: 164 -DVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTS 222

Query: 319 YFEWMVHDYKLEPGPEHY---SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
              + +  Y L+   E     + L+D+  +   L  A ++ + M  R   + S  + G +
Sbjct: 223 VHAYCLRAY-LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFV 281

Query: 376 L 376
           L
Sbjct: 282 L 282


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 152/411 (36%), Positives = 233/411 (56%), Gaps = 27/411 (6%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCSSLTASTSVKD 101
           L++ +P NP  F      F  N + L A+ + S  H     L  TY+  +SL  S   + 
Sbjct: 32  LQYQSP-NP-SFTSSAPQFDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARK 89

Query: 102 A-RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           A + GKQ+ A V  +G+     + + L++LY     +  A L+FD IP  N    N L+ 
Sbjct: 90  AIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIR 149

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY     +   ++L   M   GL  D+FT   +L+ACA LSA E GR++H ++++     
Sbjct: 150 GYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQT--GW 207

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL---WTSMLGVYGRNGY 277
             DVF+ ++LI+MY KCG V  A +VF+         + +D VL   W +M+  Y  +G+
Sbjct: 208 EKDVFVGAALIDMYAKCGCVGSAREVFDKI-------LVRDAVLVVSWNAMITGYAMHGH 260

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
             E + L+E M     KPD + FV V+SACSH G ++ G  +FE M+ DYK++P  +HY+
Sbjct: 261 ATEALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYT 319

Query: 338 CLVDLLCRAGELDKAWKLINEM---LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
           C+VDLL  +G LD+A+ LI +M    D G       +WGALL++C      ELG++A ++
Sbjct: 320 CMVDLLGHSGRLDEAYNLIMQMKVLPDSG-------VWGALLNSCKIHANVELGEIALER 372

Query: 395 ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            +EL+P + G YV+LSN+YA+   W+ + +LR+LM ++ LKK + CSWIEV
Sbjct: 373 LIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEV 423


>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
 gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
          Length = 596

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 243/457 (53%), Gaps = 56/457 (12%)

Query: 34  KNLGTLTNCLKFLN-----PRNPLPFNVVISDFCRNGSPLYALKTFSFMH------VHGI 82
           +  GTL + L+ L+      RN + +N VIS   R+G    AL+ F+ +          +
Sbjct: 107 RGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQV 166

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
            +D + + S+ +A   ++DAR  +++   V  SG   +V + +A++D Y+K   + DA  
Sbjct: 167 AIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARG 226

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL--------------------- 181
           +FD++ +++SV   ++++GYC A +    +++  +MPA                      
Sbjct: 227 VFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIA 286

Query: 182 ----------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND---VFMQS 228
                     G+    F L + L ACA +     G++VH +++R+  ++G+D   VF+ +
Sbjct: 287 LELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRR--SIGSDPFNVFIHN 344

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG +  A+ VF+    R+   + +D++ W SM+  +  NG  K+ + ++E M
Sbjct: 345 ALIDMYSKCGDMVAAMAVFD----RM---LERDIISWNSMVTGFSHNGQGKQSLAVFERM 397

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L +  +P  V F+ V++ACSH G V  G    E M  D+ +EP  EHY+  +D L R  +
Sbjct: 398 LKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAEHYAAFIDALGRNRQ 456

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A + I  +  +  G  +   WGALL ACH  G  E+ +  A+   +L+P N G YVM
Sbjct: 457 LEEASEFIKGLSSK-IGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVM 515

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+Y+    WD+  Q+R LMK KGL+KD   SWIEV
Sbjct: 516 LSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSWIEV 552



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 172/443 (38%), Gaps = 122/443 (27%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G  V A + K+       + + L+ LYA L     +   FD++P KN+   N+LL+  
Sbjct: 46  RLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAAL 105

Query: 163 CEAK-LWAGGLELVRLMP------------------------------------ALG--- 182
              +      L L+  MP                                     LG   
Sbjct: 106 ARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQ 165

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D FT+ +   ACAGL  A   R++H  ++     +   V M +++++ Y K G V  
Sbjct: 166 VAIDRFTVVSAASACAGLRDARHLRELHGAVV--VSGMEVTVIMANAMVDAYSKAGRVED 223

Query: 243 ALQVFN-------------LAGH----RLEGEIN-------KDVVLWTSMLGVYGRNGYF 278
           A  VF+             +AG+     L+  +        +D + WT+++  + +NG  
Sbjct: 224 ARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEE 283

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP--GPEHY 336
           +  ++L+E M   G  P   A V+ + AC+  G V  G E     VH + L    G + +
Sbjct: 284 EIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKE-----VHGFILRRSIGSDPF 338

Query: 337 -----SCLVDLLCRAGELDKAWKLINEMLDR---------------GHGSSSVSMWG--- 373
                + L+D+  + G++  A  + + ML+R               G G  S++++    
Sbjct: 339 NVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERML 398

Query: 374 ------------ALLSACHDCGKFELGKLAAQKALE-LDPHNVGIYVMLSNLYAKFCMWD 420
                       A+L+AC   G    G+    + LE +  H V      +  YA F   D
Sbjct: 399 KDEVQPTYVTFLAVLTACSHAGLVSDGR----RILESMQDHGVEPR---AEHYAAFI--D 449

Query: 421 EIGQLRELMKE----KGLKKDVG 439
            +G+ R+L +     KGL   +G
Sbjct: 450 ALGRNRQLEEASEFIKGLSSKIG 472


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  248 bits (633), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 148/448 (33%), Positives = 244/448 (54%), Gaps = 24/448 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFL---NPRNPLPFNVV 57
            +H    + GLL I  +   + L+  Y  C      G+L + L+     + +N + ++ +
Sbjct: 230 QIHCIAVKNGLLSI--VSVGNALVTMYAKC------GSLDDALQTFETSSDKNSITWSAM 281

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+ + ++G    ALK FS MH+ GI    +     + A + +  A  GKQV  ++ K G+
Sbjct: 282 ITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGF 341

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            S ++V +AL+D+YAK   I DA   FD +   + V   +++ GY +       L L   
Sbjct: 342 ESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGR 401

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  +  T++++L+AC+ L+A E G+Q+HA  ++     G +V + S+L  MY KC
Sbjct: 402 MEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKY--GFGLEVPIGSALSTMYAKC 459

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G +     VF     R       DV+ W +M+    +NG  KE ++L+E M + GTKPD 
Sbjct: 460 GCLKDGTLVFRRMPAR-------DVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDY 512

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           V FV ++SACSH G V+ G  YF  M  ++ ++P  EHY+C+VD+L RAG+L +A +   
Sbjct: 513 VTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEF-T 571

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
           E     HG   + +W  +L AC +   +ELG  A +K +EL       YV+LS++Y+   
Sbjct: 572 ESATIDHG---MCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALG 628

Query: 418 MWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            W+++ ++R +MK +G+ K+ GCSWIE+
Sbjct: 629 RWEDVERVRRMMKLRGVSKEPGCSWIEL 656



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 185/407 (45%), Gaps = 51/407 (12%)

Query: 46  LNPRNPLPFNVVISDFCRNG--SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           +  ++ + +N +I+ + ++G     + ++ F  M       + +      TA++++ DA 
Sbjct: 66  IQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAA 125

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            G+   A   K      VFVGS+L+++Y K  L  +A  +FD +P +NSV    ++SGY 
Sbjct: 126 GGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYA 185

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
             KL A  L L RLM       + F  +++L A         G+Q+H   ++    L + 
Sbjct: 186 SQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKN--GLLSI 243

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V + ++L+ MY KCG +  ALQ F       E   +K+ + W++M+  Y ++G   + +K
Sbjct: 244 VSVGNALVTMYAKCGSLDDALQTF-------ETSSDKNSITWSAMITGYAQSGDSDKALK 296

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCL 339
           L+ +M ++G +P E  FV VI+ACS  G    G +     VHDY L+ G E      + L
Sbjct: 297 LFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQ-----VHDYLLKLGFESQIYVMTAL 351

Query: 340 VDLLCRAGELDKAWK---------------LINEMLDRGHGSSSVSMWG----------- 373
           VD+  +   +  A K               +I   +  G    ++S++G           
Sbjct: 352 VDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNE 411

Query: 374 ----ALLSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNLYAK 415
               ++L AC      E GK    + ++      V I   LS +YAK
Sbjct: 412 LTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAK 458



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 158/360 (43%), Gaps = 48/360 (13%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           ++L   T  +  + GK + A + KS   S V++ ++L++LYAK   + +A+ +F+ I  K
Sbjct: 11  TALLQYTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNK 69

Query: 151 NSVCANALLSGYCEAKLWAGG--LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
           + V  N +++GY +         +EL + M A     +  T + +  A + L  A  GR 
Sbjct: 70  DVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRL 129

Query: 209 VHAYMIR-KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
            HA  I+   C    DVF+ SSL+ MY K GL  +A +VF+    R       + V W +
Sbjct: 130 AHAVAIKMDSC---RDVFVGSSLMNMYCKAGLTPEARKVFDTMPER-------NSVSWAT 179

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQVKLG 316
           M+  Y       E + L+  M       +E  F +V+SA +           H   VK G
Sbjct: 180 MISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNG 239

Query: 317 ----IEYFEWMVHDY-----------KLEPGPEH----YSCLVDLLCRAGELDKAWKLIN 357
               +     +V  Y             E   +     +S ++    ++G+ DKA KL +
Sbjct: 240 LLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFS 299

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM--LSNLYAK 415
            M   G   S  +  G +++AC D G    GK      L+L   +  IYVM  L ++YAK
Sbjct: 300 SMHLSGIRPSEFTFVG-VINACSDLGAAWEGKQVHDYLLKLGFES-QIYVMTALVDMYAK 357


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  248 bits (633), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 227/397 (57%), Gaps = 14/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +I+ + +NGS   A+K F  M    +  D+      L+ ST + D   GK++
Sbjct: 439 KDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKEL 497

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G+ S++ V + L+D+YAK   + D+  +F+ +  ++ +  N +++    ++  
Sbjct: 498 HCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDC 557

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GL ++  M   G+  D  T+ ++L  C+ L+A   G+++H  + +    L +DV + +
Sbjct: 558 NLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK--LGLESDVPVGN 615

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            LIEMY KCG +  + QVF L          KDVV WT+++   G  G  K+ ++ +  M
Sbjct: 616 VLIEMYSKCGSLRNSFQVFKLMK-------TKDVVTWTALISACGMYGEGKKAVRAFGEM 668

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G  PD VAFV +I ACSH+G V+ G+ YF  M  DYK+EP  EHY+C+VDLL R+  
Sbjct: 669 EAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSAL 728

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LDKA   I  M  +       S+WGALLSAC   G  E+ +  +++ +EL+P + G YV+
Sbjct: 729 LDKAEDFILSMPLK----PDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVL 784

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +SN+YA    WD++  +R+ +K +GLKKD GCSW+E+
Sbjct: 785 VSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEI 821



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 196/399 (49%), Gaps = 30/399 (7%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPL-PFNVVISDFCRNGSPLYALKTFS 75
           +IF ++L+  Y    H ++  +  +  +  +P N +  +N +I     NG    AL  +S
Sbjct: 107 VIFSAKLIAKYA---HFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYS 163

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
                 +  DTY   S + A   + D    K +   V   G+ S +++G+ALID+Y +  
Sbjct: 164 ETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFN 223

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
            +  A  +F+E+P+++ V  N+L+SGY     W   LE+      LG+  D +T+S++LR
Sbjct: 224 DLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLR 283

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC GL + E G  +H  +I K   +  DV + + L+ MY K   +    ++F       +
Sbjct: 284 ACGGLGSVEEGDIIHG-LIEK-IGIKKDVIVNNGLLSMYCKFNGLIDGRRIF-------D 334

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
             + +D V W +M+  Y + G ++E IKL+  M+ N  KPD +   +++ AC H G ++ 
Sbjct: 335 KMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGDLEF 393

Query: 316 GIEYFEWMVHDYKLEPGPE----HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
           G +Y    VHDY +  G E      + L+++  + G L  + ++ + M        SVS 
Sbjct: 394 G-KY----VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM----KCKDSVS- 443

Query: 372 WGALLSACHDCGKF-ELGKLAAQKALELDPHNVGIYVML 409
           W ++++     G F E  KL      ++ P +V  YVML
Sbjct: 444 WNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSV-TYVML 481



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 126/293 (43%), Gaps = 18/293 (6%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFS 75
           F S +++  T        G + + LK    +  R+ + +N +I+    +      L+  S
Sbjct: 506 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 565

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            M   G+  D   + S L   + +   R GK++   + K G  S V VG+ LI++Y+K  
Sbjct: 566 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG 625

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL---MPALGLDYDHFTLSA 192
            + ++  +F  +  K+ V   AL+S      ++  G + VR    M A G+  DH    A
Sbjct: 626 SLRNSFQVFKLMKTKDVVTWTALISA---CGMYGEGKKAVRAFGEMEAAGIVPDHVAFVA 682

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           ++ AC+     E G   + + ++K   +   +   + ++++  +  L+ KA         
Sbjct: 683 IIFACSHSGLVEEGLN-YFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFI----- 736

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
            L   +  D  +W ++L     +G  +   ++ E ++     PD+  +  ++S
Sbjct: 737 -LSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERII--ELNPDDTGYYVLVS 786


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 227/397 (57%), Gaps = 14/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +I+ + +NGS   A+K F  M    +  D+      L+ ST + D   GK++
Sbjct: 380 KDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKEL 438

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G+ S++ V + L+D+YAK   + D+  +F+ +  ++ +  N +++    ++  
Sbjct: 439 HCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDC 498

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GL ++  M   G+  D  T+ ++L  C+ L+A   G+++H  + +    L +DV + +
Sbjct: 499 NLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK--LGLESDVPVGN 556

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            LIEMY KCG +  + QVF L          KDVV WT+++   G  G  K+ ++ +  M
Sbjct: 557 VLIEMYSKCGSLRNSFQVFKLMK-------TKDVVTWTALISACGMYGEGKKAVRAFGEM 609

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G  PD VAFV +I ACSH+G V+ G+ YF  M  DYK+EP  EHY+C+VDLL R+  
Sbjct: 610 EAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSAL 669

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LDKA   I  M  +       S+WGALLSAC   G  E+ +  +++ +EL+P + G YV+
Sbjct: 670 LDKAEDFILSMPLK----PDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVL 725

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +SN+YA    WD++  +R+ +K +GLKKD GCSW+E+
Sbjct: 726 VSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEI 762



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 196/399 (49%), Gaps = 30/399 (7%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLP-FNVVISDFCRNGSPLYALKTFS 75
           +IF ++L+  Y    H ++  +  +  +  +P N +  +N +I     NG    AL  +S
Sbjct: 48  VIFSAKLIAKYA---HFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYS 104

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
                 +  DTY   S + A   + D    K +   V   G+ S +++G+ALID+Y +  
Sbjct: 105 ETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFN 164

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
            +  A  +F+E+P+++ V  N+L+SGY     W   LE+      LG+  D +T+S++LR
Sbjct: 165 DLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLR 224

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC GL + E G  +H  +I K   +  DV + + L+ MY K   +    ++F       +
Sbjct: 225 ACGGLGSVEEGDIIHG-LIEK-IGIKKDVIVNNGLLSMYCKFNGLIDGRRIF-------D 275

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
             + +D V W +M+  Y + G ++E IKL+  M+ N  KPD +   +++ AC H G ++ 
Sbjct: 276 KMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGDLEF 334

Query: 316 GIEYFEWMVHDYKLEPGPE----HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
           G +Y    VHDY +  G E      + L+++  + G L  + ++ + M        SVS 
Sbjct: 335 G-KY----VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM----KCKDSVS- 384

Query: 372 WGALLSACHDCGKF-ELGKLAAQKALELDPHNVGIYVML 409
           W ++++     G F E  KL      ++ P +V  YVML
Sbjct: 385 WNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSV-TYVML 422



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 126/293 (43%), Gaps = 18/293 (6%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFS 75
           F S +++  T        G + + LK    +  R+ + +N +I+    +      L+  S
Sbjct: 447 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 506

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            M   G+  D   + S L   + +   R GK++   + K G  S V VG+ LI++Y+K  
Sbjct: 507 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG 566

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL---MPALGLDYDHFTLSA 192
            + ++  +F  +  K+ V   AL+S      ++  G + VR    M A G+  DH    A
Sbjct: 567 SLRNSFQVFKLMKTKDVVTWTALISA---CGMYGEGKKAVRAFGEMEAAGIVPDHVAFVA 623

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           ++ AC+     E G   + + ++K   +   +   + ++++  +  L+ KA         
Sbjct: 624 IIFACSHSGLVEEGLN-YFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFI----- 677

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
            L   +  D  +W ++L     +G  +   ++ E ++     PD+  +  ++S
Sbjct: 678 -LSMPLKPDSSIWGALLSACRMSGDTEIAERVSERII--ELNPDDTGYYVLVS 727


>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
          Length = 596

 Score =  248 bits (632), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 243/457 (53%), Gaps = 56/457 (12%)

Query: 34  KNLGTLTNCLKFLN-----PRNPLPFNVVISDFCRNGSPLYALKTFSFMH------VHGI 82
           +  GTL + L+ L+      RN + +N VIS   R+G    AL+ F+ +          +
Sbjct: 107 RGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQV 166

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
            +D + + S+ +A   ++DAR  +++   V  SG   +V + +A++D Y+K   + DA  
Sbjct: 167 AIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARG 226

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL--------------------- 181
           +FD++ +++SV   ++++GYC A +    +++  +MPA                      
Sbjct: 227 VFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIA 286

Query: 182 ----------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND---VFMQS 228
                     G+    F L + L ACA +     G++VH +++R+  ++G+D   VF+ +
Sbjct: 287 LELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRR--SIGSDPFNVFIHN 344

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG +  A+ VF+    R+   + +D++ W SM+  +  NG  K+ + ++E M
Sbjct: 345 ALIDMYSKCGDMVAAMAVFD----RM---LERDIISWNSMVTGFSHNGQGKQSLAVFERM 397

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L +  +P  V F+ V++ACSH G V  G    E M  D+ +EP  EHY+  +D L R  +
Sbjct: 398 LKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAEHYAAFIDALGRNRQ 456

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A + I  +  +  G  +   WGALL ACH  G  E+ +  A+   +L+P N G YVM
Sbjct: 457 LEEASEFIKGLSSK-IGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVM 515

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+Y+    WD+  Q+R LMK KGL+KD   SWIEV
Sbjct: 516 LSNIYSAAGQWDDARQVRALMKGKGLRKDQAYSWIEV 552



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 133/331 (40%), Gaps = 78/331 (23%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G  V A + K+       + + L+ LYA L     +   FD++P KN+   N+LL+  
Sbjct: 46  RLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAAL 105

Query: 163 CEAK-LWAGGLELVRLMP------------------------------------ALG--- 182
              +      L L+  MP                                     LG   
Sbjct: 106 ARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQ 165

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D FT+ +   ACAGL  A   R++H  ++     +   V M +++++ Y K G V  
Sbjct: 166 VAIDRFTVVSAASACAGLRDARHLRELHGAVV--VSGMEVTVIMANAMVDAYSKAGRVED 223

Query: 243 ALQVFN-------------LAGH----RLEGEIN-------KDVVLWTSMLGVYGRNGYF 278
           A  VF+             +AG+     L+  +        +D + WT+++  + +NG  
Sbjct: 224 ARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEE 283

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP--GPEHY 336
           +  ++L+E M   G  P   A V+ + AC+  G V  G E     VH + L    G + +
Sbjct: 284 EIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKE-----VHGFILRRSIGSDPF 338

Query: 337 -----SCLVDLLCRAGELDKAWKLINEMLDR 362
                + L+D+  + G++  A  + + ML+R
Sbjct: 339 NVFIHNALIDMYSKCGDMVAAMAVFDRMLER 369


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  248 bits (632), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 229/402 (56%), Gaps = 13/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+ + +N +I+ +  N   + ALK FS MH  G  +  + L S+L A  +       
Sbjct: 117 MSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIEC 176

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+     K    SS FVG+A +D+YAK  +I DA  +F+ +P K SV  ++L +G+ + 
Sbjct: 177 KQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQN 236

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    L L +     G+    FT+S++L  CA L+    G QVHA +++       ++F
Sbjct: 237 GLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKH--GFHRNLF 294

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +SL+++Y KCG + K+ +VF      +E    K+VVLW +M+  + R+ +  E + L+
Sbjct: 295 VATSLVDVYAKCGQIEKSYEVFA----DME---EKNVVLWNAMIASFSRHAHSWEAMILF 347

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M   G  P+EV +++++SACSHTG V+ G  YF  ++ D   EP   HYSC+VD+L R
Sbjct: 348 EKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGR 407

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           +G+ D+AWKL    LD+     + SMWG+LL +        L ++AA++   L+P N G 
Sbjct: 408 SGKTDEAWKL----LDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGN 463

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +V+LSN+YA    W+ +   R+ +++ G KK++G SWIE  G
Sbjct: 464 HVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKG 505



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 143/322 (44%), Gaps = 23/322 (7%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           FC   +     K  + + V    +D + L   L      +    GK         G ++ 
Sbjct: 31  FCDKPNHRIVHKDKNLVRVERDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTD 90

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
               + LI+LY K      A  +FD + V++ +  N +++GY   +     L+L   M  
Sbjct: 91  TVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHR 150

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G     FTLS+ L ACA   A    +Q+H   I+    L +  F+ ++ +++Y KC ++
Sbjct: 151 EGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIK--LALDSSSFVGTAFLDVYAKCNMI 208

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A  VF       E    K  V W+S+   + +NG  +EV+ L+++    G +  E   
Sbjct: 209 KDACWVF-------ENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTV 261

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLI 356
            +++S C+    +  G +     VH   ++ G        + LVD+  + G+++K++++ 
Sbjct: 262 SSILSTCASLALIIEGTQ-----VHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVF 316

Query: 357 NEMLDRGHGSSSVSMWGALLSA 378
            +M ++     +V +W A++++
Sbjct: 317 ADMEEK-----NVVLWNAMIAS 333


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  248 bits (632), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 225/414 (54%), Gaps = 17/414 (4%)

Query: 36  LGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           LG L +  K  +    RN   +N  IS+   +G P  ++  F  +   G   D+   C+ 
Sbjct: 156 LGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAF 215

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L A +       G Q+   + +SG+  +V V + LID Y K   +  +E++FD +  +NS
Sbjct: 216 LNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNS 275

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  ++L++ Y +         L        ++   F +S++L ACAGLS  EFGR V A 
Sbjct: 276 VSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQAL 335

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            ++ C  +  ++F+ S+L++MYGKCG +  A Q FN    R       ++V W ++LG Y
Sbjct: 336 AVKAC--VEQNIFVASALVDMYGKCGSIDNAEQAFNAMPER-------NLVSWNALLGGY 386

Query: 273 GRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
              G+  + + L E M    G  P  V+ +  +SACS  G +K G++ FE M   Y +EP
Sbjct: 387 AHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEP 446

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
           GPEHY+CLVDLL RAG ++ A+  I  M        ++S+WGALL AC   GK ELGKLA
Sbjct: 447 GPEHYACLVDLLGRAGMVECAYDFIKRM----PFPPTISIWGALLGACRMHGKPELGKLA 502

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A+K  ELDP + G +V+LSN++A    W+E+  +R  MKE G+KK  G SWI V
Sbjct: 503 AEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWITV 556



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 162/333 (48%), Gaps = 25/333 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I+   +NG  + AL  FS M    +  + +     L AST ++    GKQ+
Sbjct: 71  RSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQL 130

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-----NSVCANALLSGYC 163
            A   K G ++ VFVG ++ D+Y+KL  ++DA  +FDE+P +     N+  +N++L G  
Sbjct: 131 HALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRP 190

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           E  + A  +EL+R    +G   D  T  A L AC+       G Q+H ++IR     G +
Sbjct: 191 EDSVIA-FIELLR----VGGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRS--GYGQN 243

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V + + LI+ YGKCG V  +  VF+  G R       + V W+S++  Y +N   ++   
Sbjct: 244 VSVSNGLIDFYGKCGEVECSEMVFDRMGER-------NSVSWSSLIAAYVQNNEEEKASC 296

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           L+        +P +    +V+ AC+   +++ G    + +     +E      S LVD+ 
Sbjct: 297 LFLRARKEDIEPTDFMVSSVLCACAGLSEIEFG-RSVQALAVKACVEQNIFVASALVDMY 355

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            + G +D A +  N M +R     ++  W ALL
Sbjct: 356 GKCGSIDNAEQAFNAMPER-----NLVSWNALL 383


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  248 bits (632), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 137/404 (33%), Positives = 234/404 (57%), Gaps = 27/404 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + ++ +I+ + + G    ALK FS MH  G     + L   L A + V     GKQ 
Sbjct: 277 KNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQT 336

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC----- 163
             ++ KSG+ + ++  +AL+D+YAK     DA   FD +   + V   ++++GY      
Sbjct: 337 HGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKN 396

Query: 164 -EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            EA    G +++ +++P      +  T++++L+AC+ L+A E G+Q+HA  I+    LG 
Sbjct: 397 EEALSMYGRMQMRKILP------NELTMASVLKACSNLAALEQGKQIHARTIKY--GLGP 448

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           ++ ++S+L  MY KCG + + + +F     R+   + +D+V W +M+    +NG+ +E +
Sbjct: 449 ELSIRSALSTMYAKCGSLEEGVLIFR----RM---LQRDIVSWNAMISGLSQNGHGREAL 501

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L+E M + GTKPD + FVTV+SACSH G VK G  YF  M  ++ L P  EHY+C+VD+
Sbjct: 502 ELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDV 561

Query: 343 LCRAGELDKAWKLI-NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           L RAG+L++A + I + ++D G     + +W  LL AC +   +ELG  A +K +EL   
Sbjct: 562 LSRAGKLNEAKEFIESAIIDHG-----MCLWRILLPACRNHCNYELGAYAGEKLMELGSR 616

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
               YV+LS++Y       ++ ++R +MK +G++K+ GCSWIE+
Sbjct: 617 ESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIEL 660



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 166/350 (47%), Gaps = 22/350 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS +        AL  F  M +    L+ +   S L+A    +    GKQV
Sbjct: 176 RNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQV 235

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K+G L  V V +AL+ +YAK   ++ + ++F+    KN++  +AL++GY +A   
Sbjct: 236 HCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDS 295

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M   G     FTL  +L+AC+ ++A E G+Q H Y+++        ++  +
Sbjct: 296 HKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKS--GYETQIYTAT 353

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY K G    A + F+         +  D+VLWTS++  Y +NG  +E + +Y  M
Sbjct: 354 ALVDMYAKFGFTGDARKGFDFL-------LEPDLVLWTSIIAGYVQNGKNEEALSMYGRM 406

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            M    P+E+   +V+ ACS+   ++ G +     +  Y L P     S L  +  + G 
Sbjct: 407 QMRKILPNELTMASVLKACSNLAALEQGKQIHARTI-KYGLGPELSIRSALSTMYAKCGS 465

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           L++   +   ML R      +  W A++S     G         ++ALEL
Sbjct: 466 LEEGVLIFRRMLQR-----DIVSWNAMISGLSQNGH-------GREALEL 503



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 118/482 (24%), Positives = 207/482 (42%), Gaps = 67/482 (13%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HAH  +   L  C  +  + L+  Y  C H      +   LK    +N + +N +I   
Sbjct: 29  LHAHIIKIPYLSSCNYL-ANNLIKFYAKCGHLHGAKLVFENLKH---KNVVSYNCLIHGL 84

Query: 62  CRNGS--PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF-GKQVQAHVTKSGWL 118
             NGS    + L+ F  M  + I  D +      TA+       F  +QV     K+  +
Sbjct: 85  SHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASI 144

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
             VFVGS+L++ Y K+  + +A  +FD +P +N V    ++SGY   ++    L +  LM
Sbjct: 145 DDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLM 204

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
             +  + + F  +++L A       + G+QVH  +++    +   V + ++L+ MY KCG
Sbjct: 205 RLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKN--GVLEFVSVLNALVTMYAKCG 262

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  +L +F +         +K+ + W++++  Y + G   + +KL+  M   G  P E 
Sbjct: 263 NLNYSLMLFEMCS-------DKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEF 315

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWK 354
             V V+ ACS    ++ G +      H Y L+ G E      + LVD+  + G    A K
Sbjct: 316 TLVGVLKACSDVAAIEEGKQ-----THGYLLKSGYETQIYTATALVDMYAKFGFTGDARK 370

Query: 355 ---------------LINEMLDRGHGSSSVSMWG---------------ALLSACHDCGK 384
                          +I   +  G    ++SM+G               ++L AC +   
Sbjct: 371 GFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAA 430

Query: 385 FELGKLAAQKALE--LDPHNVGIYVMLSNLYAKFCMWDEIGQLRE--LMKEKGLKKDVGC 440
            E GK    + ++  L P  + I   LS +YAK       G L E  L+  + L++D+  
Sbjct: 431 LEQGKQIHARTIKYGLGP-ELSIRSALSTMYAK------CGSLEEGVLIFRRMLQRDI-V 482

Query: 441 SW 442
           SW
Sbjct: 483 SW 484


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  247 bits (631), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 237/397 (59%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I  + RN     AL  F  M   G     + + S L+A  +  DA   K++
Sbjct: 127 RSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKL 186

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K+    +++VG+AL+DLYAK  +I+DA  +F+ +  K+SV  +++++GY ++K +
Sbjct: 187 HCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNY 246

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L R    + L+ + FTLS+++ AC+ L+A   G+Q+HA +IRK    G++VF+ S
Sbjct: 247 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHA-VIRKS-GFGSNVFVAS 304

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           S ++MY KCG + ++  +F+           K++ LW +++  + ++   KEV+ L+E M
Sbjct: 305 SAVDMYAKCGSLRESYIIFSEVQE-------KNIELWNTIISGFAKHARPKEVMILFEKM 357

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G  P+EV F +++S C HTG V+ G  +F+ M   Y L P   HYSC+VD+L RAG 
Sbjct: 358 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGL 417

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A++LI  +        + S+WG+LL++C  C   EL ++AA+K  EL+P N G +V+
Sbjct: 418 LSEAYELIKSI----PFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVL 473

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W+EI + R+L+++  +KK  G SWI++
Sbjct: 474 LSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDI 510



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 141/295 (47%), Gaps = 21/295 (7%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           F++   LC+   A    K A  GK ++  +     LS+V     LI+ Y+K   +  A  
Sbjct: 66  FIEILQLCARNGAVMEAK-ACHGKTMRMELQGDVTLSNV-----LINAYSKCGFVELARQ 119

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD +  ++ V  N ++  Y   ++ +  L++   M   G  +  FT+S++L AC     
Sbjct: 120 VFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCD 179

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
           A   +++H   ++   +L  ++++ ++L+++Y KCG++  A+QVF       E   +K  
Sbjct: 180 ALECKKLHCLSMKTSLDL--NLYVGTALLDLYAKCGMINDAVQVF-------ESMQDKSS 230

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V W+SM+  Y ++  ++E + LY        + ++    +VI ACS+   +  G +    
Sbjct: 231 VTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHA 289

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           ++            S  VD+  + G L +++ + +E+ ++     ++ +W  ++S
Sbjct: 290 VIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEK-----NIELWNTIIS 339



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 110/251 (43%), Gaps = 24/251 (9%)

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L+ CA   A    +  H   +R    L  DV + + LI  Y KCG V  A QVF+    
Sbjct: 69  ILQLCARNGAVMEAKACHGKTMRM--ELQGDVTLSNVLINAYSKCGFVELARQVFD---- 122

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
              G + + +V W +M+G+Y RN    E + ++  M   G K  E    +V+SAC     
Sbjct: 123 ---GMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCD 179

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
             L  +    +     L+      + L+DL  + G ++ A ++   M D+    SSV+ W
Sbjct: 180 A-LECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDK----SSVT-W 233

Query: 373 GALLSACHDCGKFE----LGKLAAQKALELDPHNV-GIYVMLSNLYAKFCMWDEIGQLRE 427
            ++++       +E    L + A + +LE +   +  +    SNL A      E  Q+  
Sbjct: 234 SSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALI----EGKQMHA 289

Query: 428 LMKEKGLKKDV 438
           ++++ G   +V
Sbjct: 290 VIRKSGFGSNV 300


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  247 bits (631), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 145/447 (32%), Positives = 245/447 (54%), Gaps = 20/447 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHAH  +T  L    +  ++RL++ Y  C    +L    +    +  RN + +  +IS 
Sbjct: 79  RVHAHMIKTHYL--PCVYLRTRLIVFYVKC---DSLRDARHVFDVMPERNVVSWTAMISA 133

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + + G    AL  F  M   G   + +   + LT+         G+Q+ +H+ K  + + 
Sbjct: 134 YSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAH 193

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           V+VGS+L+D+YAK   IH+A  +F  +P ++ V   A++SGY +  L    LEL R +  
Sbjct: 194 VYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQR 253

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  ++ T +++L A +GL+A + G+QVH +++R    + + V +Q+SLI+MY KCG +
Sbjct: 254 EGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRS--EVPSYVVLQNSLIDMYSKCGNL 311

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVA 299
           T A ++F+    R        V+ W +ML  Y ++G  +EV++L+  M+  N  KPD V 
Sbjct: 312 TYARRIFDTLHERT-------VISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVT 364

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            + V+S CSH G    G++ F  M      ++P  +HY C+VD+L RAG ++ A++ + +
Sbjct: 365 VLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKK 424

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M        S ++WG LL AC      ++G+    + L+++P N G YV+LSNLYA    
Sbjct: 425 MP----FEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGR 480

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEV 445
           W+++  LR LM +K + K+ G SWIE+
Sbjct: 481 WEDVRSLRNLMLKKAVTKEPGRSWIEL 507



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 140/278 (50%), Gaps = 23/278 (8%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G++V AH+ K+ +L  V++ + LI  Y K   + DA  +FD +P +N V   A++S Y
Sbjct: 75  REGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAY 134

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +    +  L L   M   G + + FT + +L +C G S    GRQ+H+++I+   N   
Sbjct: 135 SQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIK--LNYEA 192

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            V++ SSL++MY K G + +A  +F     R       DVV  T+++  Y + G  +E +
Sbjct: 193 HVYVGSSLLDMYAKDGKIHEARGIFQCLPER-------DVVSCTAIISGYAQLGLDEEAL 245

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
           +L+  +   G + + V + +V++A S    +  G +     VH++ L      Y    + 
Sbjct: 246 ELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQ-----VHNHLLRSEVPSYVVLQNS 300

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           L+D+  + G L  A ++ + + +R     +V  W A+L
Sbjct: 301 LIDMYSKCGNLTYARRIFDTLHER-----TVISWNAML 333



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 18/189 (9%)

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   GLD +    + +L  C    A   G++VHA+MI+   +    V++++ LI  Y KC
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIK--THYLPCVYLRTRLIVFYVKC 106

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
             +  A  VF++   R       +VV WT+M+  Y + GY  + + L+  ML +GT+P+E
Sbjct: 107 DSLRDARHVFDVMPER-------NVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNE 159

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAW 353
             F TV+++C  +    LG +     +H + ++   E +    S L+D+  + G++ +A 
Sbjct: 160 FTFATVLTSCIGSSGFVLGRQ-----IHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEAR 214

Query: 354 KLINEMLDR 362
            +   + +R
Sbjct: 215 GIFQCLPER 223


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  247 bits (631), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 144/431 (33%), Positives = 232/431 (53%), Gaps = 17/431 (3%)

Query: 17   IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
            ++F + L+  Y+ C    NL       + +  +  + +  +I+ + R G    A++ F  
Sbjct: 689  VMFNNTLLDMYSKC---GNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYE 745

Query: 77   MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
            M   G+  D Y++ S L A         G+ V  ++ K+     + V +AL+D+YAK   
Sbjct: 746  MESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGS 805

Query: 137  IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
            + +A L+F +IPVK+ V  N ++ GY +  L    L+L   M       D  T++ LL A
Sbjct: 806  MEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRP-DGITMACLLPA 864

Query: 197  CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            C  L+A E GR +H  ++R      +++ + ++LI+MY KCG +  A  +F++       
Sbjct: 865  CGSLAALEIGRGIHGCILRN--GYSSELHVANALIDMYVKCGSLVHARLLFDMIPE---- 918

Query: 257  EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               KD++ WT M+   G +G   E I  ++ M + G KPDE+ F +++ ACSH+G +  G
Sbjct: 919  ---KDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEG 975

Query: 317  IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
              +F  M+ +  +EP  EHY+C+VDLL R G L KA+ LI  M  +       ++WGALL
Sbjct: 976  WGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIK----PDATIWGALL 1031

Query: 377  SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
              C      EL +  A+   EL+P N G YV+L+N+YA+   W+E+ +LRE + ++GLKK
Sbjct: 1032 CGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKK 1091

Query: 437  DVGCSWIEVTG 447
              GCSWIEV G
Sbjct: 1092 SPGCSWIEVQG 1102



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 173/370 (46%), Gaps = 26/370 (7%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R+ + +N +IS    NG    AL+ F  M +  + +D   L +S+ A  +V     G
Sbjct: 614 LGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLG 673

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + +     K+ +   V   + L+D+Y+K   ++DA   F+++  K  V   +L++ Y   
Sbjct: 674 RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVRE 733

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L+   + L   M + G+  D ++++++L ACA  ++ + GR VH Y IRK  N+   + 
Sbjct: 734 GLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNY-IRK-NNMALCLP 791

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L++MY KCG + +A  VF+           KD+V W +M+G Y +N    E +KL+
Sbjct: 792 VSNALMDMYAKCGSMEEAYLVFSQIPV-------KDIVSWNTMIGGYSKNSLPNEALKLF 844

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVD 341
            A +   ++PD +    ++ AC     +++G       +H   L  G        + L+D
Sbjct: 845 -AEMQKESRPDGITMACLLPACGSLAALEIG-----RGIHGCILRNGYSSELHVANALID 898

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELD 399
           +  + G L  A +L+ +M+        +  W  ++S C  H  G   +      +   + 
Sbjct: 899 MYVKCGSLVHA-RLLFDMIPE----KDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIK 953

Query: 400 PHNVGIYVML 409
           P  +    +L
Sbjct: 954 PDEITFTSIL 963



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 143/306 (46%), Gaps = 10/306 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N+++S++ + G    ++  F  M   GI  ++Y     L    ++      K++   V 
Sbjct: 521 WNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVY 580

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+ S   V ++LI  Y K   +  A  +FDE+  ++ V  N+++SG          LE
Sbjct: 581 KLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALE 640

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M  L +  D  TL   + ACA + +   GR +H   ++ C     +V   ++L++M
Sbjct: 641 FFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKAC--FSREVMFNNTLLDM 698

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A+Q F   G        K VV WTS++  Y R G + + I+L+  M   G 
Sbjct: 699 YSKCGNLNDAIQAFEKMGQ-------KTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGV 751

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            PD  +  +V+ AC+    +  G +   ++  +      P   + L+D+  + G +++A+
Sbjct: 752 SPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS-NALMDMYAKCGSMEEAY 810

Query: 354 KLINEM 359
            + +++
Sbjct: 811 LVFSQI 816



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 159/373 (42%), Gaps = 31/373 (8%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           L  N  I  FC  G    A++         + L+ Y+  S L      K  + GK V + 
Sbjct: 419 LDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYS--SILQLCAEHKCLQEGKMVHSV 476

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA-NALLSGYCEAKLWAG 170
           ++ +G      +G+ L+ +Y     + +   +FD I   N V   N ++S Y +   +  
Sbjct: 477 ISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRE 536

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            + L + M  LG+  + +T S +L+  A L      +++H  + +     G+   + +SL
Sbjct: 537 SIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYK--LGFGSYNTVVNSL 594

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           I  Y K G V  A ++F+  G R       DVV W SM+     NG+    ++ +  ML+
Sbjct: 595 IATYFKSGEVDSAHKLFDELGDR-------DVVSWNSMISGCVMNGFSHSALEFFVQMLI 647

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRA 346
                D    V  ++AC++ G + LG       +H   ++          + L+D+  + 
Sbjct: 648 LRVGVDLATLVNSVAACANVGSLSLG-----RALHGQGVKACFSREVMFNNTLLDMYSKC 702

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG-- 404
           G L+ A +   +M     G  +V  W +L++A    G ++    A +   E++   V   
Sbjct: 703 GNLNDAIQAFEKM-----GQKTVVSWTSLIAAYVREGLYD---DAIRLFYEMESKGVSPD 754

Query: 405 IYVMLSNLYAKFC 417
           +Y M S L+A  C
Sbjct: 755 VYSMTSVLHACAC 767


>gi|357117671|ref|XP_003560587.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Brachypodium distachyon]
          Length = 602

 Score =  247 bits (630), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 142/396 (35%), Positives = 225/396 (56%), Gaps = 20/396 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHV-HGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  +IS F RN     A++ F  M   +G+  D     S +TA  +++ AR G +  A V
Sbjct: 208 YTSLISAFVRNDWFEEAVRWFRTMVTRNGVEPDGCTFGSMMTALGNLRRARQGSEAHAQV 267

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G   SV V S+ +D+YAK  ++ +A  +FDE+ V+N+V  +ALL GYC+   +   L
Sbjct: 268 VTRGLCGSVIVESSTLDMYAKCGMMLEARRVFDEMQVRNAVSWSALLGGYCQNAEYEKVL 327

Query: 173 ELVRLMPALGLDYDH-FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG-NDVFMQSSL 230
            L R M     +YD  ++L  +LRACAGLS+ + G+++H   +R   N G  DV ++S+L
Sbjct: 328 VLFRQMDK---EYDDSYSLGTVLRACAGLSSVKPGKEIHCRFLR---NGGWRDVVVESAL 381

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           +++Y KCG V  A +VF       E    ++ + W +M+G + +NG+ +  I L+  M+ 
Sbjct: 382 VDLYAKCGAVDYACRVF-------EASSVRNTITWNAMIGGFAQNGHAERAINLFNQMVR 434

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G +PD ++F+ V+ ACSH G V+ G  YF  M  DY + PG EHY+C+VDLL R   L+
Sbjct: 435 EGARPDYISFIGVLFACSHNGMVEQGRNYFNSMSKDYGIAPGIEHYNCIVDLLSRVELLE 494

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +A  LIN    +   S+  S+W A+L A       ++ +  A+K +EL+P     Y++L 
Sbjct: 495 EAEDLIN----KSPFSNDSSLWAAILGASATQSNPDVAERVAKKMMELEPQYHLSYILLE 550

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           N+Y     W++  ++R LMK + +KKD G SWI+V 
Sbjct: 551 NVYRTVGRWEDASEIRRLMKSRKVKKDPGMSWIDVN 586



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 173/392 (44%), Gaps = 45/392 (11%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYA 88
           R  ++L         L  R+ +  + +++ F R G P  AL++   M     G+F + +A
Sbjct: 82  RLPRHLPYALRAFDDLPHRDVVAHSSILAAFLRAGLPRRALQSLRSMLAGADGVFPNAHA 141

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           L +++ A   ++D   G  V   +   G+     V SAL+D+Y       DA   F+E+ 
Sbjct: 142 LSAAVKACAVLRDRNVGACVHGVILVRGYADDDIVLSALVDMYGHTASPGDARKAFEEMC 201

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGR 207
             + +C  +L+S +     +   +   R M    G++ D  T  +++ A   L  A  G 
Sbjct: 202 TPDGICYTSLISAFVRNDWFEEAVRWFRTMVTRNGVEPDGCTFGSMMTALGNLRRARQGS 261

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           + HA ++ +   L   V ++SS ++MY KCG++ +A +VF+      E ++ ++ V W++
Sbjct: 262 EAHAQVVTR--GLCGSVIVESSTLDMYAKCGMMLEARRVFD------EMQV-RNAVSWSA 312

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE--------- 318
           +LG Y +N  +++V+ L+    M+    D  +  TV+ AC+    VK G E         
Sbjct: 313 LLGGYCQNAEYEKVLVLFRQ--MDKEYDDSYSLGTVLRACAGLSSVKPGKEIHCRFLRNG 370

Query: 319 -----YFEWMVHDYKLEPGPEHYSC----------------LVDLLCRAGELDKAWKLIN 357
                  E  + D   + G   Y+C                ++    + G  ++A  L N
Sbjct: 371 GWRDVVVESALVDLYAKCGAVDYACRVFEASSVRNTITWNAMIGGFAQNGHAERAINLFN 430

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           +M+  G     +S  G L +  H+ G  E G+
Sbjct: 431 QMVREGARPDYISFIGVLFACSHN-GMVEQGR 461



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 19/269 (7%)

Query: 122 FVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-- 178
           +V +AL+  Y +L   +  A   FD++P ++ V  +++L+ +  A L    L+ +R M  
Sbjct: 71  YVANALLAFYVRLPRHLPYALRAFDDLPHRDVVAHSSILAAFLRAGLPRRALQSLRSMLA 130

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
            A G+  +   LSA ++ACA L     G  VH  ++ +     +D  + S+L++MYG   
Sbjct: 131 GADGVFPNAHALSAAVKACAVLRDRNVGACVHGVILVR--GYADDDIVLSALVDMYGHTA 188

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKPDE 297
               A + F       E     D + +TS++  + RN +F+E ++ +  M+  NG +PD 
Sbjct: 189 SPGDARKAF-------EEMCTPDGICYTSLISAFVRNDWFEEAVRWFRTMVTRNGVEPDG 241

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
             F ++++A  +  + + G E    +V    L       S  +D+  + G + +A ++ +
Sbjct: 242 CTFGSMMTALGNLRRARQGSEAHAQVV-TRGLCGSVIVESSTLDMYAKCGMMLEARRVFD 300

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           EM  R   S     W ALL       ++E
Sbjct: 301 EMQVRNAVS-----WSALLGGYCQNAEYE 324


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  247 bits (630), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 224/414 (54%), Gaps = 17/414 (4%)

Query: 36  LGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           LG L +  K  +    RN   +N  IS+   +G P  ++  F  +   G   D+   C  
Sbjct: 156 LGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXF 215

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L A +       G Q+   + +SG+  +V V + LID Y K   +  +E++FD +  +NS
Sbjct: 216 LNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNS 275

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  ++L++ Y +         L        ++   F +S++L ACAGLS  EFGR V A 
Sbjct: 276 VSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQAL 335

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            ++ C  +  ++F+ S+L++MYGKCG +  A Q FN    R       ++V W ++LG Y
Sbjct: 336 AVKAC--VEQNIFVASALVDMYGKCGSIDNAEQAFNAMPER-------NLVSWNALLGGY 386

Query: 273 GRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
              G+  + + L E M    G  P  V+ +  +SACS  G +K G++ FE M   Y +EP
Sbjct: 387 AHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEP 446

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
           GPEHY+CLVDLL RAG ++ A+  I  M        ++S+WGALL AC   GK ELGKLA
Sbjct: 447 GPEHYACLVDLLGRAGMVECAYDFIKRM----PFPPTISIWGALLGACRMHGKPELGKLA 502

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A+K  ELDP + G +V+LSN++A    W+E+  +R  MKE G+KK  G SWI V
Sbjct: 503 AEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWITV 556



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 161/333 (48%), Gaps = 25/333 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I+   +NG  + AL  FS M    +  + +     L AST ++    GKQ+
Sbjct: 71  RSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQL 130

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-----NSVCANALLSGYC 163
            A   K G ++ VFVG ++ D+Y+KL  ++DA  +FDE+P +     N+  +N++L G  
Sbjct: 131 HALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRP 190

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           E  + A  +EL+R    +G   D  T    L AC+       G Q+H ++IR     G +
Sbjct: 191 EDSVIA-FIELLR----VGGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRS--GYGQN 243

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V + + LI+ YGKCG V  +  VF+  G R       + V W+S++  Y +N   ++   
Sbjct: 244 VSVSNGLIDFYGKCGEVECSEMVFDRMGER-------NSVSWSSLIAAYVQNNEEEKASC 296

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           L+        +P +    +V+ AC+   +++ G    + +     +E      S LVD+ 
Sbjct: 297 LFLRARKEDIEPTDFMVSSVLCACAGLSEIEFG-RSVQALAVKACVEQNIFVASALVDMY 355

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            + G +D A +  N M +R     ++  W ALL
Sbjct: 356 GKCGSIDNAEQAFNAMPER-----NLVSWNALL 383


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  247 bits (630), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 133/404 (32%), Positives = 224/404 (55%), Gaps = 15/404 (3%)

Query: 45  FLNPRNP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           F   R P  + +  +IS + + G   +A++ F  M    +  + Y   + +++  ++  A
Sbjct: 283 FEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAA 342

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           ++G+Q+  HV + G ++++ V +++I LY+K  L+  A L+F  I  K+ +  + ++S Y
Sbjct: 343 KWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVY 402

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +        + +  M   G   + F LS++L  C  ++  E G+QVHA+++  C  + +
Sbjct: 403 SQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLL--CIGIDH 460

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +  + S++I MY KCG V +A ++FN       G    D++ WT+M+  Y  +GY +E I
Sbjct: 461 EAMVHSAIISMYSKCGSVQEASKIFN-------GMKINDIISWTAMINGYAEHGYSQEAI 513

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L+E +   G KPD V F+ V++AC+H G V LG  YF  M + Y++ P  EHY CL+DL
Sbjct: 514 NLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDL 573

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           LCRAG L +A  +I  M    H    V  W  LL AC   G  + G+  A++ L+LDP++
Sbjct: 574 LCRAGRLSEAEHIIRSM--PFHTDDVV--WSTLLRACRVHGDVDRGRWTAEQLLQLDPNS 629

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
            G ++ L+N+YA    W E   +R+LMK KG+ K+ G SW+ V 
Sbjct: 630 AGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVN 673



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 150/315 (47%), Gaps = 18/315 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +I+     G  +  L  FS M    +  D++    +L AS        GK +
Sbjct: 188 RNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAI 247

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G+  S FV + L  +Y K         +F+++ + + V    L+S Y +    
Sbjct: 248 HTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEE 307

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +E  + M    +  + +T +A++ +CA L+AA++G Q+H +++R    L N + + +
Sbjct: 308 EHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLR--LGLVNALSVAN 365

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           S+I +Y KCGL+  A  VF+       G   KD++ W++++ VY + GY KE       M
Sbjct: 366 SIITLYSKCGLLKSASLVFH-------GITRKDIISWSTIISVYSQGGYAKEAFDYLSWM 418

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLC 344
              G KP+E A  +V+S C     ++ G +     VH + L  G +H    +S ++ +  
Sbjct: 419 RREGPKPNEFALSSVLSVCGSMALLEQGKQ-----VHAHLLCIGIDHEAMVHSAIISMYS 473

Query: 345 RAGELDKAWKLINEM 359
           + G + +A K+ N M
Sbjct: 474 KCGSVQEASKIFNGM 488



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 10/272 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARF 104
           +  R+ + +  +I+ +        AL  FS M VH G   D + +  +L A     +  F
Sbjct: 83  MTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNICF 142

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+ +     KSG + SVFV SALID+Y K+  I     +F+++  +N V   A+++G   
Sbjct: 143 GELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVH 202

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           A     GL     M    + YD  T +  L+A A  S    G+ +H   I++        
Sbjct: 203 AGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQ--GFDESS 260

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++L  MY KCG     +++F       E     DVV WT+++  Y + G  +  ++ 
Sbjct: 261 FVINTLATMYNKCGKPDYVMRLF-------EKMRMPDVVSWTTLISTYVQMGEEEHAVEA 313

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           ++ M  +   P++  F  VIS+C++    K G
Sbjct: 314 FKRMRKSYVSPNKYTFAAVISSCANLAAAKWG 345



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 28/254 (11%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM---PALGLDYDHFTLSALLRA 196
           A  MFD++  ++ +    L++GY  A      L L   M   P  G   D F +S  L+A
Sbjct: 76  ARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHP--GPQRDQFMISVALKA 133

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA      FG  +H + ++    L + VF+ S+LI+MY K G + +  +VF       E 
Sbjct: 134 CALGVNICFGELLHGFSVKS--GLIHSVFVSSALIDMYMKVGKIEQGCRVF-------EK 184

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            + ++VV WT+++      GY  E +  +  M  +    D   F   + A + +  +  G
Sbjct: 185 MMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHG 244

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLC----RAGELDKAWKLINEMLDRGHGSSSVSMW 372
                  +H   ++ G +  S +++ L     + G+ D   +L  +M         V  W
Sbjct: 245 KA-----IHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMR-----MPDVVSW 294

Query: 373 GALLSACHDCGKFE 386
             L+S     G+ E
Sbjct: 295 TTLISTYVQMGEEE 308


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/365 (36%), Positives = 222/365 (60%), Gaps = 15/365 (4%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           F  T+ L + + +  SV   + GK++ AH+ + G+ +++ V + L+D+YAK   +  A  
Sbjct: 180 FTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANS 239

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGL 200
           +F  +P KN V  +A+++ + + ++    LEL +LM     D   +  T+  +L+ACAGL
Sbjct: 240 VFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGL 299

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
           +A E G+ +H Y++R+   L + + + ++LI MYG+CG +    +VF       +   N+
Sbjct: 300 AALEQGKLIHGYILRR--GLDSILPVLNALITMYGRCGEILMGQRVF-------DNMKNR 350

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           DVV W S++ +YG +G+ K+ I+++E M+  G+ P  ++F+TV+ ACSH G V+ G   F
Sbjct: 351 DVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILF 410

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           E M+  Y++ PG EHY+C+VDLL RA  LD+A KLI +M    H     ++WG+LL +C 
Sbjct: 411 ESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDM----HFEPGPTVWGSLLGSCR 466

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
                EL + A+    EL+P N G YV+L+++YA+  MW E   + +L++ +GL+K  GC
Sbjct: 467 IHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGC 526

Query: 441 SWIEV 445
           SWIEV
Sbjct: 527 SWIEV 531



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 137/299 (45%), Gaps = 32/299 (10%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G  V   +  SG+    F+ + LI++Y +L  I  A  +FDE   +     NAL      
Sbjct: 97  GLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAM 156

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACA----GLSAAEFGRQVHAYMIRKCCNL 220
                  L+L   M  +G+  D FT + +L+AC      +S  + G+++HA+++R     
Sbjct: 157 VGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRH--GY 214

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             ++ + ++L+++Y K G V+ A  VF            K+ V W++M+  + +N    +
Sbjct: 215 EANIHVMTTLLDVYAKFGSVSYANSVFCAMP-------TKNFVSWSAMIACFAKNEMPMK 267

Query: 281 VIKLYEAMLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-- 336
            ++L++ M++    + P+ V  V V+ AC+    ++ G      ++H Y L  G +    
Sbjct: 268 ALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQG-----KLIHGYILRRGLDSILP 322

Query: 337 --SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
             + L+ +  R GE+    ++ + M +R      V  W +L+S     G    GK A Q
Sbjct: 323 VLNALITMYGRCGEILMGQRVFDNMKNR-----DVVSWNSLISI---YGMHGFGKKAIQ 373



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +N + ++ +I+ F +N  P+ AL+ F  M    H    ++  + + L A   +     GK
Sbjct: 247 KNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGK 306

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +  ++ + G  S + V +ALI +Y +   I   + +FD +  ++ V  N+L+S Y    
Sbjct: 307 LIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHG 366

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                +++   M   G    + +   +L AC+     E G+ +   M+ K   +   +  
Sbjct: 367 FGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSK-YRIHPGMEH 425

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            + ++++ G+   + +A+++        +        +W S+LG
Sbjct: 426 YACMVDLLGRANRLDEAIKLIE------DMHFEPGPTVWGSLLG 463


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 151/447 (33%), Positives = 241/447 (53%), Gaps = 25/447 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVI 58
           VHAH  ++        IF+  +++  T        G+L    K       R+ + +  +I
Sbjct: 82  VHAHILQS--------IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLI 133

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           S + ++  P  AL  F+ M   G   + + L S + A+ + +    G Q+     K G+ 
Sbjct: 134 SGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFD 193

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S+V VGSAL+DLY +  L+ DA+L+FD +  +N V  NAL++G+         LEL + M
Sbjct: 194 SNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGM 253

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              G    HF+ ++L  AC+     E G+ VHAYMI+    L    F  ++L++MY K G
Sbjct: 254 LRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLV--AFAGNTLLDMYAKSG 311

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A ++F+    R       DVV W S+L  Y ++G+ KE +  +E M   G +P+E+
Sbjct: 312 SIHDARKIFDRLAKR-------DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEI 364

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           +F++V++ACSH+G +  G  Y+E M  D  + P   HY  +VDLL RAG+L++A + I E
Sbjct: 365 SFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M        + ++W ALL+AC      ELG  AA+   ELDP + G +V+L N+YA    
Sbjct: 424 MPI----EPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGR 479

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEV 445
           W++  ++R+ MKE G+KK+  CSW+E+
Sbjct: 480 WNDAARVRKKMKESGVKKEPACSWVEI 506



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 176/348 (50%), Gaps = 29/348 (8%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+ V AH+ +S +   + +G+ L+++YAK   + +A  +F+++P ++ V    L+SGY +
Sbjct: 79  GRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQ 138

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L     M   G   + FTLS++++A A       G Q+H + ++  C   ++V
Sbjct: 139 HDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK--CGFDSNV 196

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + S+L+++Y + GL+  A  VF+     LE   +++ V W +++  + R    ++ ++L
Sbjct: 197 HVGSALLDLYTRYGLMDDAQLVFDA----LE---SRNDVSWNALIAGHARRSGTEKALEL 249

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLV 340
           ++ ML +G +P   ++ ++  ACS TG ++ G    +W VH Y ++ G +  +     L+
Sbjct: 250 FQGMLRDGFRPSHFSYASLFGACSSTGFLEQG----KW-VHAYMIKSGEKLVAFAGNTLL 304

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALEL 398
           D+  ++G +  A K+ + +  R      V  W +LL+A   H  GK  +      + + +
Sbjct: 305 DMYAKSGSIHDARKIFDRLAKR-----DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
            P+ +    +L+   +   + DE     ELMK+ G+   V  +W  VT
Sbjct: 360 RPNEISFLSVLTAC-SHSGLLDEGWHYYELMKKDGI---VPEAWHYVT 403


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/413 (33%), Positives = 229/413 (55%), Gaps = 14/413 (3%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           NL +     + +  R+ + +  +I+ + R G    +++ F  M   GI  D + + + L 
Sbjct: 301 NLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILH 360

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A         GK V  ++ ++   S +FV +AL+D+YAK   + DA  +F E+ VK+ V 
Sbjct: 361 ACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVS 420

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            N ++ GY +  L    L L   M       +  T++ +L ACA L+A E G+++H +++
Sbjct: 421 WNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHIL 479

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           R   +L  D  + ++L++MY KCG +  A  +F++          KD+V WT M+  YG 
Sbjct: 480 RNGFSL--DRHVANALVDMYLKCGALGLARLLFDMIPE-------KDLVSWTVMIAGYGM 530

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +GY  E I  +  M  +G +PDEV+F++++ ACSH+G +  G  +F  M ++  +EP  E
Sbjct: 531 HGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSE 590

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
           HY+C+VDLL RAG L KA+K I  M          ++WGALL  C      +L +  A+ 
Sbjct: 591 HYACIVDLLARAGNLSKAYKFIKMM----PIEPDATIWGALLCGCRIYHDVKLAEKVAEH 646

Query: 395 ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             EL+P N G YV+L+N+YA+   W+E+ +LRE +  +GL+K+ GCSWIE+ G
Sbjct: 647 VFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKG 699



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 175/373 (46%), Gaps = 25/373 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R+ + +N +IS +  NG     L  F  M + GI  D   + S +   ++      G
Sbjct: 211 LGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLG 270

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + +  +  K+ +   + + + L+D+Y+K   ++ A  +F+ +  ++ V   ++++GY   
Sbjct: 271 RALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYARE 330

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    + L   M   G+  D FT++ +L ACA     E G+ VH Y+  K   + +D+F
Sbjct: 331 GLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYI--KENKMQSDLF 388

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L++MY KCG +  A  VF+      E ++ KD+V W +M+G Y +N    E + L+
Sbjct: 389 VSNALMDMYAKCGSMGDAHSVFS------EMQV-KDIVSWNTMIGGYSKNSLPNEALNLF 441

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYS-CLVD 341
             M  N +KP+ +    ++ AC+    ++ G E     +H + L  G     H +  LVD
Sbjct: 442 VEMQYN-SKPNSITMACILPACASLAALERGQE-----IHGHILRNGFSLDRHVANALVD 495

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           +  + G L  A  L + + ++   S +V + G      H  G   +      +   ++P 
Sbjct: 496 MYLKCGALGLARLLFDMIPEKDLVSWTVMIAGY---GMHGYGSEAIAAFNEMRNSGIEPD 552

Query: 402 NVGIYVMLSNLYA 414
            V     +S LYA
Sbjct: 553 EVSF---ISILYA 562



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 10/223 (4%)

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A  +FDE+  ++ +  N+++SGY    L   GL+L   M  LG++ D  T+ +++  
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+       GR +H Y I+   + G ++ + + L++MY K G +  A+QVF   G R   
Sbjct: 261 CSNTGMLLLGRALHGYAIK--ASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGER--- 315

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
                VV WTSM+  Y R G     ++L+  M   G  PD     T++ AC+ TG ++ G
Sbjct: 316 ----SVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENG 371

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
            +   + + + K++      + L+D+  + G +  A  + +EM
Sbjct: 372 KDVHNY-IKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEM 413


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 226/400 (56%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I  F RNGS   A+  F  M   G+  +   + S L A+  V+D RFG+ V
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSV 226

Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
                ++G +   VF+GS+L+D+Y K     DA+ +FDE+P +N V   AL++GY +++ 
Sbjct: 227 HGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRC 286

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +  G+ +   M    +  +  TLS++L ACA + A   GR+VH YMI+    +       
Sbjct: 287 FDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTA--G 344

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI++Y KCG + +A+ VF     RL     K+V  WT+M+  +  +GY ++   L+  
Sbjct: 345 TTLIDLYVKCGCLEEAILVFE----RLH---EKNVYTWTAMINGFAAHGYARDAFDLFYT 397

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           ML +   P+EV F+ V+SAC+H G V+ G   F  M   + +EP  +HY+C+VDL  R G
Sbjct: 398 MLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKG 457

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L++A  LI  M        +  +WGAL  +C     +ELGK AA + ++L P + G Y 
Sbjct: 458 LLEEAKALIERM----PMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYT 513

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +L+NLY++   WDE+ ++R+ MK++ + K  G SWIEV G
Sbjct: 514 LLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKG 553



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 155/339 (45%), Gaps = 17/339 (5%)

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           +  M  +G+    +     L A   ++D+    Q  AH+ K G  S  FV ++LI  Y+ 
Sbjct: 92  YRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSS 150

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
             L   A  +FD    K+ V   A++ G+      +  +     M   G+  +  T+ ++
Sbjct: 151 SGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSV 210

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L+A   +    FGR VH   + +   +  DVF+ SSL++MYGKC     A +VF+    R
Sbjct: 211 LKAAGKVEDVRFGRSVHGLYL-ETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSR 269

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  +VV WT+++  Y ++  F + + ++E ML +   P+E    +V+SAC+H G +
Sbjct: 270 -------NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGAL 322

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G     +M+ +  +E      + L+DL  + G L++A  +   + ++     +V  W 
Sbjct: 323 HRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEK-----NVYTWT 376

Query: 374 ALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           A+++  A H   +          +  + P+ V    +LS
Sbjct: 377 AMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLS 415


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 151/447 (33%), Positives = 241/447 (53%), Gaps = 25/447 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVI 58
           VHAH  ++        IF+  +++  T        G+L    K       R+ + +  +I
Sbjct: 82  VHAHILQS--------IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLI 133

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           S + ++  P  AL  F+ M   G   + + L S + A+ + +    G Q+     K G+ 
Sbjct: 134 SGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFD 193

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S+V VGSAL+DLY +  L+ DA+L+FD +  +N V  NAL++G+         LEL + M
Sbjct: 194 SNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGM 253

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              G    HF+ ++L  AC+     E G+ VHAYMI+    L    F  ++L++MY K G
Sbjct: 254 LRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLV--AFAGNTLLDMYAKSG 311

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A ++F+    R       DVV W S+L  Y ++G+ KE +  +E M   G +P+E+
Sbjct: 312 SIHDARKIFDRLAKR-------DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEI 364

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           +F++V++ACSH+G +  G  Y+E M  D  + P   HY  +VDLL RAG+L++A + I E
Sbjct: 365 SFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M        + ++W ALL+AC      ELG  AA+   ELDP + G +V+L N+YA    
Sbjct: 424 MPI----EPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGR 479

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEV 445
           W++  ++R+ MKE G+KK+  CSW+E+
Sbjct: 480 WNDAARVRKKMKESGVKKEPACSWVEI 506



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 176/348 (50%), Gaps = 29/348 (8%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+ V AH+ +S +   + +G+ L+++YAK   + +A  +F+++P ++ V    L+SGY +
Sbjct: 79  GRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQ 138

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L     M   G   + FTLS++++A A       G Q+H + ++  C   ++V
Sbjct: 139 HDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK--CGFDSNV 196

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + S+L+++Y + GL+  A  VF+     LE   +++ V W +++  + R    ++ ++L
Sbjct: 197 HVGSALLDLYTRYGLMDDAQLVFDA----LE---SRNDVSWNALIAGHARRSGTEKALEL 249

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLV 340
           ++ ML +G +P   ++ ++  ACS TG ++ G    +W VH Y ++ G +  +     L+
Sbjct: 250 FQGMLRDGFRPSHFSYASLFGACSSTGFLEQG----KW-VHAYMIKSGEKLVAFAGNTLL 304

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALEL 398
           D+  ++G +  A K+ + +  R      V  W +LL+A   H  GK  +      + + +
Sbjct: 305 DMYAKSGSIHDARKIFDRLAKR-----DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
            P+ +    +L+   +   + DE     ELMK+ G+   V  +W  VT
Sbjct: 360 RPNEISFLSVLTAC-SHSGLLDEGWHYYELMKKDGI---VPEAWHYVT 403


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 243/448 (54%), Gaps = 24/448 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFL---NPRNPLPFNVV 57
            +H    +TGLL+   I+  + L+  Y  C      G+L + L+     N +N + ++ +
Sbjct: 233 QIHCLAVKTGLLVFLSIL--NALVTMYAKC------GSLDDSLQVFEMSNDKNSITWSAM 284

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+ + ++G    ALK FS MH  GI    + L   L A +       GKQV  ++ K G+
Sbjct: 285 ITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGF 344

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            S +++ +AL+D+YAK  +  DA   F+ +   + V   ++++GY +       L L   
Sbjct: 345 ESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCR 404

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  +  T++++L+AC+ L+A + GRQ+HA  I+    LG +V + S+L  MY KC
Sbjct: 405 MQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKY--GLGLEVTIGSALSTMYAKC 462

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G + +   VF     R       D++ W +M+    +NGY KE ++L+E M    TKPD+
Sbjct: 463 GNLEEGNIVFRRMPER-------DIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDD 515

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           V FV V+SACSH G V  G  YF  M  ++ L P  EHY+C+VD+L RAG+L +A + I 
Sbjct: 516 VTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFI- 574

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
           E     HG   + +W  LL AC +   +ELG  A +K +EL       YV+LS +Y    
Sbjct: 575 ESTTIDHG---LCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTALG 631

Query: 418 MWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             +++ ++R +MK +G+ K+ GCSWIE+
Sbjct: 632 RPEDVERVRSMMKVRGVSKEPGCSWIEL 659



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 191/412 (46%), Gaps = 61/412 (14%)

Query: 46  LNPRNPLPFNVVISDFCRNGS--PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           ++ ++ + +N +I+ + + G     + ++ F  M    I  + +      TA++++    
Sbjct: 69  IHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIF 128

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           FG+Q  A   K      VFVGS+L+++Y K  L+ +A  +FD +P +N V    ++SGY 
Sbjct: 129 FGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYA 188

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
             +L     E+  LM     D + F  +++L A A     + G+Q+H   ++     G  
Sbjct: 189 IQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKT----GLL 244

Query: 224 VFMQ--SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           VF+   ++L+ MY KCG +  +LQVF ++        +K+ + W++M+  Y ++G   + 
Sbjct: 245 VFLSILNALVTMYAKCGSLDDSLQVFEMSN-------DKNSITWSAMITGYAQSGDSHKA 297

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----S 337
           +KL+  M   G  P E   V V++ACS    V+ G +     VH+Y L+ G E      +
Sbjct: 298 LKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQ-----VHNYLLKLGFESQLYIMT 352

Query: 338 CLVDLLCRAGELDKAWKLINEM---------------LDRGHGSSSVSMW---------- 372
            LVD+  ++G  + A K  N +               +  G    ++S++          
Sbjct: 353 ALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILP 412

Query: 373 -----GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM----LSNLYAK 415
                 ++L AC +   F+ G+    + ++   + +G+ V     LS +YAK
Sbjct: 413 NELTMASVLKACSNLAAFDQGRQIHARTIK---YGLGLEVTIGSALSTMYAK 461



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 163/360 (45%), Gaps = 46/360 (12%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSS-VFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           +SL   T  K  + G+ + A + K    SS +++ ++LI+ YAK   +  A+L+FD I  
Sbjct: 12  NSLVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHN 71

Query: 150 KNSVCANALLSGYCEAKLWAGG--LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           K+ +  N L++GY +         +EL + M A  +  +  T S +  A + LS+  FG+
Sbjct: 72  KDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQ 131

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q HA  I+  C    DVF+ SSL+ MY K GL+ +A +VF+    R E       V W +
Sbjct: 132 QAHAVAIKMACFY--DVFVGSSLLNMYCKAGLLFEAREVFDRMPERNE-------VTWAT 182

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQVKLG 316
           M+  Y       E  +++E M       +E AF +V+SA +           H   VK G
Sbjct: 183 MISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTG 242

Query: 317 IEYF-------------------EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           +  F                      V +   +     +S ++    ++G+  KA KL +
Sbjct: 243 LLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFS 302

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM--LSNLYAK 415
            M   G   S  ++ G +L+AC D    E GK      L+L   +  +Y+M  L ++YAK
Sbjct: 303 RMHFAGINPSEFTLVG-VLNACSDACAVEEGKQVHNYLLKLGFES-QLYIMTALVDMYAK 360


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 220/398 (55%), Gaps = 13/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + ++ +I+ + +NG+   A++ FS MH  G     + L   L A + V     GKQ 
Sbjct: 284 RNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQA 343

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G+   V+V SAL+D+YAK   I DA+  F++    + V   A+++G+ +   +
Sbjct: 344 HGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEF 403

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M   G+  +  T+++LLRACAGL+A E G+Q+H  +++    LG  V   S
Sbjct: 404 EQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASV--GS 461

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L  MY KCG +   + VF    HR       DV+ W S++  + +NG   + I L+E M
Sbjct: 462 ALSTMYSKCGNLEDGMVVFRRMPHR-------DVIAWNSIISGFSQNGRGNDAINLFEEM 514

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            + GT PD V F+ V+ ACSH G V  G  YF  M+ DY L P  +HY+C+VD+L RAG 
Sbjct: 515 KLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGM 574

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A   I E +   HG+    +W  +L AC     F++G  A +K ++L   +   Y++
Sbjct: 575 LSEAKDFI-ESITIDHGT---CLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYIL 630

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           LSN+YA    W+++ ++R LMK  G+ KD GCSW+E+ 
Sbjct: 631 LSNIYAAQRKWNDVERVRYLMKLVGVSKDPGCSWVELN 668



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 137/273 (50%), Gaps = 24/273 (8%)

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S+VFV +AL+++Y KL LI DA+L+FDE+P +N V   A+++GY   K      EL R M
Sbjct: 151 SNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQM 210

Query: 179 PALG---LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
             LG   L  + F  +A+L A +       G QVH  +++    +   V +++SL+ MY 
Sbjct: 211 --LGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKD--GMVGFVSVENSLVTMYA 266

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           K G +  A  VF       E    ++ + W++M+  Y +NG  +  ++++  M   G  P
Sbjct: 267 KAGCMDAAFHVF-------ESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPP 319

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAW 353
            E   V V++ACS  G +  G +    MV   KL    + Y  S LVD+  + G +  A 
Sbjct: 320 TEFTLVGVLNACSDVGTLMEGKQAHGLMV---KLGFEVQVYVKSALVDMYAKCGCIGDAK 376

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           +  N+  +       + +W A+++     G+FE
Sbjct: 377 ECFNQFSEL-----DIVLWTAMVTGHVQNGEFE 404



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 130/280 (46%), Gaps = 15/280 (5%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G QV   V K G +  V V ++L+ +YAK   +  A  +F+    +NS+  +A+++GY +
Sbjct: 239 GVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQ 298

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  + +   M A G     FTL  +L AC+ +     G+Q H  M++    +   V
Sbjct: 299 NGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEV--QV 356

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           +++S+L++MY KCG +  A + FN            D+VLWT+M+  + +NG F++ + L
Sbjct: 357 YVKSALVDMYAKCGCIGDAKECFNQFSEL-------DIVLWTAMVTGHVQNGEFEQALML 409

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           Y  M   G  P+ +   +++ AC+    ++ G +     +  +    G    S L  +  
Sbjct: 410 YARMDKEGVFPNTLTITSLLRACAGLAALEPG-KQLHTQILKFGFGLGASVGSALSTMYS 468

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           + G L+    +   M  R      V  W +++S     G+
Sbjct: 469 KCGNLEDGMVVFRRMPHR-----DVIAWNSIISGFSQNGR 503



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 104/241 (43%), Gaps = 4/241 (1%)

Query: 3   HAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFC 62
            AH     L     +  +S L+  Y  C     +G    C    +  + + +  +++   
Sbjct: 342 QAHGLMVKLGFEVQVYVKSALVDMYAKC---GCIGDAKECFNQFSELDIVLWTAMVTGHV 398

Query: 63  RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF 122
           +NG    AL  ++ M   G+F +T  + S L A   +     GKQ+   + K G+     
Sbjct: 399 QNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGAS 458

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           VGSAL  +Y+K   + D  ++F  +P ++ +  N+++SG+ +       + L   M   G
Sbjct: 459 VGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEG 518

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
              D  T   +L AC+ +   + G      MI K   L   +   + ++++  + G++++
Sbjct: 519 TAPDPVTFINVLCACSHMGLVDRGWTYFRSMI-KDYGLTPRLDHYACMVDILSRAGMLSE 577

Query: 243 A 243
           A
Sbjct: 578 A 578


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 237/439 (53%), Gaps = 31/439 (7%)

Query: 15  CLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYAL 71
           C +   S L   Y+ C      G L++  K       ++ + +  +I  F +NG    AL
Sbjct: 209 CELFVGSNLTDMYSKC------GELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKAL 262

Query: 72  KTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY 131
             +  M    +F+D + LCS+L+A +++K + FGK + A + K G+    F+G+AL D+Y
Sbjct: 263 TAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMY 322

Query: 132 AKLLLIHDAELMF----DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
           +K   +  A  +F    D I +   V   A++ GY E       L     +   G++ + 
Sbjct: 323 SKSGDMVSASNVFQIHSDCISI---VSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNE 379

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
           FT ++L++ACA  +  E G Q+H  +++   N   D F+ S+L++MYGKCGL   ++Q+F
Sbjct: 380 FTFTSLIKACANQAKLEHGSQLHGQVVK--FNFKRDPFVSSTLVDMYGKCGLFDHSIQLF 437

Query: 248 NLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           +        EI N D + W +++GV+ ++G  +  I+ +  M+  G KP+ V FV ++  
Sbjct: 438 D--------EIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKG 489

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
           CSH G V+ G+ YF  M   Y + P  EHYSC++DLL RAG+L +A   IN M       
Sbjct: 490 CSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNM----PFE 545

Query: 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLR 426
            +V  W + L AC   G  E  K AA K ++L+P N G +V+LSN+YAK   W+++  LR
Sbjct: 546 PNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLR 605

Query: 427 ELMKEKGLKKDVGCSWIEV 445
           +++K+  + K  G SW+++
Sbjct: 606 KMIKDGNMNKLPGYSWVDI 624



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 154/314 (49%), Gaps = 9/314 (2%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN + +  +I+ F  N     AL +F  M + G     +AL S L A TS+   +FG
Sbjct: 136 MSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFG 195

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            QV   V K G+   +FVGS L D+Y+K   + DA   F+E+P K++V   +++ G+ + 
Sbjct: 196 TQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKN 255

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +   L     M    +  D   L + L AC+ L A+ FG+ +HA +++       + F
Sbjct: 256 GDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILK--LGFEYETF 313

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L +MY K G +  A  VF +    +       +V  T+++  Y      ++ +  +
Sbjct: 314 IGNALTDMYSKSGDMVSASNVFQIHSDCIS------IVSLTAIIDGYVEMDQIEKALSTF 367

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             +   G +P+E  F ++I AC++  +++ G +    +V  +  +  P   S LVD+  +
Sbjct: 368 VDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVV-KFNFKRDPFVSSTLVDMYGK 426

Query: 346 AGELDKAWKLINEM 359
            G  D + +L +E+
Sbjct: 427 CGLFDHSIQLFDEI 440



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 169/373 (45%), Gaps = 42/373 (11%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           DT  +   +      K+   GKQ+ A + + G L + F+ +  ++LY+K   +     +F
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLF 133

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D++  +N V   ++++G+     +   L     M   G     F LS++L+AC  L A +
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
           FG QVH  +++  C  G ++F+ S+L +MY KCG ++ A + F       E    KD VL
Sbjct: 194 FGTQVHCLVVK--CGFGCELFVGSNLTDMYSKCGELSDACKAF-------EEMPCKDAVL 244

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQV 313
           WTSM+  + +NG FK+ +  Y  M+ +    D+    + +SACS           H   +
Sbjct: 245 WTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATIL 304

Query: 314 KLGIEYFEWM---VHDYKLEPGPE---------HYSC--------LVDLLCRAGELDKAW 353
           KLG EY  ++   + D   + G           H  C        ++D      +++KA 
Sbjct: 305 KLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKAL 364

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNL 412
               ++  RG   +  + + +L+ AC +  K E G     + ++ +   +  +   L ++
Sbjct: 365 STFVDLRRRGIEPNEFT-FTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDM 423

Query: 413 YAKFCMWDEIGQL 425
           Y K  ++D   QL
Sbjct: 424 YGKCGLFDHSIQL 436


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/399 (35%), Positives = 221/399 (55%), Gaps = 15/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS   + G    ALK F  M   G+  D   L S  +A     D R  K +
Sbjct: 233 RDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSL 292

Query: 109 QAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
             +V + GW +  +  G+A++D+YAKL  I  A+ MFD +PV++SV  N L++GY +  L
Sbjct: 293 HCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGL 352

Query: 168 WAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
               +E    +    GL     T  ++L A + L A + G ++HA  I+   N+  DV++
Sbjct: 353 ANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNV--DVYV 410

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            + LI++Y KCG + +A+ +F     R  G        W +++   G +G+  E + L+ 
Sbjct: 411 GTCLIDLYAKCGKLAEAMLLFEKMPRRSTGP-------WNAIISGLGVHGHGAEALTLFS 463

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M   G KPD V FV++++ACSH G V  G  +F+ M   Y + P  +HY+C+ D+L RA
Sbjct: 464 RMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRA 523

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G+LD+A+  I  M  +       ++WGALL AC   G  E+GK+A+Q   ELDP NVG Y
Sbjct: 524 GQLDEAFNFIQNMPIK----PDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYY 579

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           V++SN+YAK   WD + ++R L++ + L+K  G S IEV
Sbjct: 580 VLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEV 618



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 173/370 (46%), Gaps = 21/370 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+   +N ++S  CRN     A+  F  M   G+  DT  + S L     + D    
Sbjct: 129 MSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLA 188

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
             +  +  K G    +FV +ALID+Y KL ++ +A+ +F  +  ++ V  N+++SG  + 
Sbjct: 189 LVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQR 248

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              A  L++ + M   G+  D  TL +L  A A        + +H Y++R+  ++ +D+ 
Sbjct: 249 GQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDV-DDII 307

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
             +++++MY K   +  A ++F       +    +D V W +++  Y +NG   E ++ Y
Sbjct: 308 AGNAIVDMYAKLSNIEAAQRMF-------DSMPVQDSVSWNTLITGYMQNGLANEAVERY 360

Query: 286 EAMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDL 342
             M  + G K  +  FV+V+ A SH G ++ G+      +   K+    + Y  +CL+DL
Sbjct: 361 GHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSI---KIGLNVDVYVGTCLIDL 417

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDP 400
             + G+L +A  L  +M  R  G      W A++S    H  G   L   +  +   + P
Sbjct: 418 YAKCGKLAEAMLLFEKMPRRSTGP-----WNAIISGLGVHGHGAEALTLFSRMQQEGIKP 472

Query: 401 HNVGIYVMLS 410
            +V    +L+
Sbjct: 473 DHVTFVSLLA 482



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 171/393 (43%), Gaps = 34/393 (8%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMH--VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           N +I+ F R   P  A      +    +    D +   S + A+ S   A    Q+ A  
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASA---AQLHACA 93

Query: 113 TKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
            + G +  SVF   +L+  Y +   I +A  +FDE+  ++    NA+LSG C     A  
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEA 153

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           + L   M   G+  D  T+S++L  C  L        +H Y ++    L  ++F+ ++LI
Sbjct: 154 VGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKH--GLDKELFVCNALI 211

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           ++YGK G++ +A  VF    H +E    +D+V W S++    + G     +K+++ M  +
Sbjct: 212 DVYGKLGMLEEAQCVF----HGME---CRDLVTWNSIISGCEQRGQTAAALKMFQGMRGS 264

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-----HYSCLVDLLCRA 346
           G  PD +  V++ SA +  G  +         +H Y +  G +       + +VD+  + 
Sbjct: 265 GVSPDVLTLVSLASAIAQGGDGRSAKS-----LHCYVMRRGWDVDDIIAGNAIVDMYAKL 319

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
             ++ A ++ + M  +     SVS W  L++     G   L   A ++   +  H  G+ 
Sbjct: 320 SNIEAAQRMFDSMPVQ----DSVS-WNTLITGYMQNG---LANEAVERYGHMQKHE-GLK 370

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439
            +     +    +  +G L++ M+   L   +G
Sbjct: 371 AIQGTFVSVLPAYSHLGALQQGMRMHALSIKIG 403


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/390 (36%), Positives = 218/390 (55%), Gaps = 18/390 (4%)

Query: 57  VISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
           +IS F RN     AL  F S    HG+  D +   + LTA  ++   + GK+V A V  S
Sbjct: 234 IISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITS 293

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G   +VFV S+L+D+Y K  L++ ++ +FD + VKN V   ALL GYC+     G  E V
Sbjct: 294 GLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQN----GDFESV 349

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
             +   G   D ++   +LRACAGL+A   G++VH   +++CC    DV  +S+L+++Y 
Sbjct: 350 IRIFREGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCC--WRDVVTESALVDLYA 407

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG +  A ++F     R       +++ W SM+  + +NG   EV +L++ M+  G +P
Sbjct: 408 KCGCIDFAYRIFVRMSVR-------NLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRP 460

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           D ++FV V+ ACSH G V  G +YF  M   Y+++PG EHY+C++DLL RAG L++A  L
Sbjct: 461 DYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENL 520

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
           I    +  +     S+W  LL AC         +  A+KA+EL P +   YV L+N+Y  
Sbjct: 521 I----ENANCRDEPSLWTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRA 576

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              WD+  ++R LM ++G+ K  G SWIE 
Sbjct: 577 VGRWDDAVKIRNLMTKRGVGKMPGTSWIET 606



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 194/429 (45%), Gaps = 64/429 (14%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I+ + +   P  +L+ F  M   GI  + + L + + A + + D R GK  
Sbjct: 125 KDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCF 184

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V   G+  +  + +ALID+Y +   + DA L+F E+P  +++C  +++S +    ++
Sbjct: 185 HGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVY 244

Query: 169 AGGLELVRLM-PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              L     M    GL  D FT   +L AC  L   + G++VHA +I     L  +VF++
Sbjct: 245 DKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITS--GLSGNVFVE 302

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           SSL++MYGKC LV ++  VF+    R+     K++V WT++LG Y +NG F+ VI+++  
Sbjct: 303 SSLVDMYGKCRLVNQSQCVFD----RMS---VKNLVSWTALLGGYCQNGDFESVIRIFR- 354

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-----HDYKLEPGPEHYSCLVDL 342
               G K D  +F TV+ AC+    V+ G E     V      D   E      S LVDL
Sbjct: 355 ---EGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTE------SALVDL 405

Query: 343 LCRAGELDKAWK-------------------------------LINEMLDRGHGSSSVSM 371
             + G +D A++                               L +EM++ G     +S 
Sbjct: 406 YAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISF 465

Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
            G L  AC   G  + GK       E       +Y +   +    CM D +G+   L + 
Sbjct: 466 VGVLF-ACSHAGLVDQGKKYFAAMTE-------VYEIKPGIEHYNCMIDLLGRAGLLEEA 517

Query: 432 KGLKKDVGC 440
           + L ++  C
Sbjct: 518 ENLIENANC 526



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 185/391 (47%), Gaps = 35/391 (8%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           + L  ++ RH   L +L   LK L   NP      I  +C++GS   A+   + +    +
Sbjct: 1   MKLLLSSQRHYSTLASLN--LKTL--ENPQSKAYKIIQYCKSGSLFEAIHVLNSIDWTRL 56

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL-LLIHDAE 141
               +   S L   T       G Q  +H  KSG  +  FVG++L+ LY KL   + +A 
Sbjct: 57  SNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEAR 116

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            +FD +  K+ +   ++++GY + +     LEL   M  LG++ + FTLSA+++AC+GL 
Sbjct: 117 RVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLG 176

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
               G+  H  ++ +  +L NDV + ++LI+MYG+   V  A+ VF             D
Sbjct: 177 DLRLGKCFHGVVMVRGFDL-NDV-ISTALIDMYGRNSAVDDAILVFVELPQ-------PD 227

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
            + WTS++  + RN  + + +  + +M   +G  PD   F TV++AC + G++K G E  
Sbjct: 228 AICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKE-- 285

Query: 321 EWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINE---MLDRGHGSSSVSMWG 373
              VH   +  G        S LVD+  +        +L+N+   + DR    + VS W 
Sbjct: 286 ---VHAKVITSGLSGNVFVESSLVDMYGKC-------RLVNQSQCVFDRMSVKNLVS-WT 334

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           ALL      G FE      ++  ++D ++ G
Sbjct: 335 ALLGGYCQNGDFESVIRIFREGKKVDTYSFG 365


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/395 (36%), Positives = 224/395 (56%), Gaps = 20/395 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +NV+I  +  NG    A++ +  M  +G+  D +     L A  ++     G+++  HV 
Sbjct: 144 WNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVV 203

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           ++GW   VFVG+ALID+YAK   +  A  +FD+I V+++V  N++L+ Y +       L 
Sbjct: 204 QTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLS 263

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M   GL     TL   + A A  +A   GR++H    R+     + V  +++L++M
Sbjct: 264 LCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKV--KTALVDM 321

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V  A  +F   G        K VV W +M+  Y  +G+  E + L+E M     
Sbjct: 322 YAKCGSVRVARNLFERLG-------VKRVVSWNAMITGYAMHGHATEALDLFEEM-NRVA 373

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           KPD + FV V+SACSH G ++ G  +FE M+ DYK++P  +HY+C+VDLL  +G LD+A+
Sbjct: 374 KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAY 433

Query: 354 KLINEM---LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            LI +M    D G       +WGALL++C      ELG++A ++ +EL+P + G YV+LS
Sbjct: 434 NLIMQMKVLPDSG-------VWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILS 486

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           N+YA+   W+ + +LR+LM ++ LKK + CSWIEV
Sbjct: 487 NIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEV 521



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 162/339 (47%), Gaps = 23/339 (6%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCSSLTASTSVKD 101
           L++ +P NP  F      F  N + L A+ + S  H     L  TY+  +SL  S   + 
Sbjct: 32  LQYQSP-NP-SFTSSAPQFDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARK 89

Query: 102 A-RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           A + GKQ+ A V  +G+     + + L++LY     +  A L+FD IP  N    N L+ 
Sbjct: 90  AIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIR 149

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY     +   ++L   M   GL  D+FT   +L+ACA LSA E GR++H ++++     
Sbjct: 150 GYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQT--GW 207

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             DVF+ ++LI+MY KCG V  A +VF+         + +D VLW SML  Y +NG+   
Sbjct: 208 EKDVFVGAALIDMYAKCGCVGSAREVFDKI-------LVRDAVLWNSMLAAYSQNGHPDA 260

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY--FEWMVHDYKLEPGPEHYSC 338
            + L   M++ G +P E   VT ISA +    +  G E     W     + E   +  + 
Sbjct: 261 CLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWR---QEFESHDKVKTA 317

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           LVD+  + G +  A  L   +     G   V  W A+++
Sbjct: 318 LVDMYAKCGSVRVARNLFERL-----GVKRVVSWNAMIT 351



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 133/333 (39%), Gaps = 47/333 (14%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +++ + +NG P   L   S M + G+      L ++++AS        G+++
Sbjct: 240 RDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGREL 299

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                +  + S   V +AL+D+YAK   +  A  +F+ + VK  V  NA+++GY      
Sbjct: 300 HGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHA 359

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M  +    DH T   +L AC+     E G      MIR             
Sbjct: 360 TEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIR------------- 405

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
                                     + +I+  V  +T M+ + G +G   E    Y  +
Sbjct: 406 --------------------------DYKIDPTVQHYTCMVDLLGHSGRLDEA---YNLI 436

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSCLVDLLCRAG 347
           +     PD   +  ++++C     V+LG    E ++   +LEP    +Y  L ++  +AG
Sbjct: 437 MQMKVLPDSGVWGALLNSCKIHANVELGEIALERLI---ELEPDDAGNYVILSNIYAQAG 493

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           + +   KL   M DR    S    W  + +  H
Sbjct: 494 KWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVH 526


>gi|396582353|gb|AFN88216.1| pentatricopeptide repeat-containing protein [Phaseolus vulgaris]
          Length = 499

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 135/438 (30%), Positives = 255/438 (58%), Gaps = 20/438 (4%)

Query: 14  ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKT 73
           +  II  + +++ Y+ C    ++ T     + ++ R+ + +N +I+ F +NG    AL  
Sbjct: 28  VTPIIVVNAIIVMYSRC---SSVDTSFKVFEKMSERDGVSWNTIITSFVQNGLDEEALML 84

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
              M      +D+  + + L+A+++++D+  G+Q  A++ + G +    + S LID+YAK
Sbjct: 85  VCEMQKQRFTIDSVTVTALLSAASNMRDSYIGRQTHAYLIRHG-IQFEGMESYLIDMYAK 143

Query: 134 LLLIHDAELMFDEI-PVKNSVCA-NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191
             LI  +EL+F++  P    + + NA+++GY +  L    + ++R      +  +  TL+
Sbjct: 144 SGLITTSELLFEQNGPSDRDLASWNAMIAGYTQNGLSDKAILILREALVRKVTPNAVTLA 203

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           ++L +C+ + +    RQ+H + IR+   L  +V++ ++L++ Y K G ++ A  VF    
Sbjct: 204 SILPSCSSMGSTAIARQLHGFSIRQL--LDENVYVGTALVDAYSKLGAISYAENVFIRT- 260

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
                 + K+ V +T+M+  YG++G  K  + LY++ML +G KPD V F+ ++SACS++G
Sbjct: 261 ------LAKNSVTYTTMIMSYGQHGMGKRALALYDSMLRSGIKPDAVTFIAILSACSYSG 314

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            V+ G+  FE M   +K++P  EHY C+ D+L R G + +A++ +  +   G    +V +
Sbjct: 315 LVEEGLHIFESMDKIHKIKPSTEHYCCVADMLGRVGRVVEAYEFVERL---GEDGDAVEI 371

Query: 372 WGALLSACHDCGKFELGKLAAQKALE--LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
           WG++L AC + G FELGK+ A+K L   ++    G +V+LSN+YA+   W+ + ++R  M
Sbjct: 372 WGSILGACKNHGYFELGKVVAEKLLNMGMEKRIAGYHVLLSNIYAEEGEWENVDRVRNQM 431

Query: 430 KEKGLKKDVGCSWIEVTG 447
           KEKGL+K++ CSW+E+ G
Sbjct: 432 KEKGLQKEMACSWVEIAG 449


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 153/432 (35%), Positives = 236/432 (54%), Gaps = 50/432 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           ++ + +N +IS +  N     AL  F   +   GI  D++ L S L A   +   R GK+
Sbjct: 239 KDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKE 298

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY-CEAK 166
           V A     G   + FVG AL+++Y+K   +  A+L FD +  +++   N L+SGY C  +
Sbjct: 299 VHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQ 358

Query: 167 L---------------------WAG-------------GLELVRLMPALGLDYDHFTLSA 192
           L                     W G              L L   M    L  D +T+  
Sbjct: 359 LENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGI 418

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L ACA L+    G+QVHA+ IR+   L  DV + ++L++MY KCG +  A+QV+N    
Sbjct: 419 ILPACARLATIARGKQVHAHSIRQGYEL--DVHIGAALVDMYAKCGSIKHAMQVYN---- 472

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
           R+    N ++V   +ML  Y  +G+  E I L+  ML NG +PD V F++V+S+C H G 
Sbjct: 473 RIS---NPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGA 529

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           V+ G E+F+ M + Y + P  +HY+C+VDLL RAG LD+A++L+ ++  +     SV MW
Sbjct: 530 VETGHEFFDLMTY-YNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRK---PDSV-MW 584

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
           GALL  C   G  ELG++AA+  +EL+P+N G YV+L+NLYA    W ++ + R+++K++
Sbjct: 585 GALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDR 644

Query: 433 GLKKDVGCSWIE 444
           G+ K  GCSWIE
Sbjct: 645 GMHKSPGCSWIE 656



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 40/358 (11%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAS--TSVKDARFG 105
           PR P      +S    N +P     + +  H H   LD   + SS  AS   S +    G
Sbjct: 24  PRKP----TNLSFQSPNSTPQSMHLSTAAHHTHLSLLDK-QIDSSTYASLLESCRTLNLG 78

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQV AH  K+G+    FV + L+ +Y +   + DA L+F ++P +N     A+LS + + 
Sbjct: 79  KQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDH 138

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN--- 222
             +   L L   +    +  + F    +L+ C GL   E GRQ+H  +I++C ++G+   
Sbjct: 139 GYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALK 198

Query: 223 --------DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
                   +V   +++I  Y + G V KA ++F+    ++E  + KD + W SM+  Y  
Sbjct: 199 IFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFD----QME-LVGKDTISWNSMISGYAD 253

Query: 275 NGYFKEVIKLYEAMLM-NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           N  F E + ++  +LM  G + D     +V++AC+    ++ G E     VH   +  G 
Sbjct: 254 NLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKE-----VHAQAVVRGL 308

Query: 334 EHYS-----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            H++      LV++  +  +L  A    + + +R       + W  L+S    C + E
Sbjct: 309 -HWNTFVGGALVEMYSKCEDLKAAQLAFDGVTER-----DTATWNVLISGYACCNQLE 360



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 144/356 (40%), Gaps = 56/356 (15%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKF--LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           L+  Y  C   +N+  L   +K     P N   +N +IS    NG    AL+ F+ M   
Sbjct: 349 LISGYACCNQLENIQNLIQKMKGDGFEP-NVYTWNGIISGHVENGHNELALRLFTEMQTS 407

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
            +  D Y +   L A   +     GKQV AH  + G+   V +G+AL+D+YAK   I  A
Sbjct: 408 SLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHA 467

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +++ I   N V  NA+L+ Y        G+ L R M   G   DH T  ++L +C   
Sbjct: 468 MQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHA 527

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
            A E G +                     L+  Y     VT +L+ +             
Sbjct: 528 GAVETGHEFF------------------DLMTYYN----VTPSLKHY------------- 552

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
                T ++ +  R G   E  +L + +     KPD V +  ++  C   G V+LG    
Sbjct: 553 -----TCIVDLLSRAGRLDEAYELVKKI---PRKPDSVMWGALLGGCVIWGNVELGEIAA 604

Query: 321 EWMVHDYKLEPGPE-HYSCLVDLLCRAG---ELDKAWKLINEMLDRGHGSSSVSMW 372
           E ++   +LEP    +Y  L +L   AG   +LD+  ++I    DRG   S    W
Sbjct: 605 ESLI---ELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIK---DRGMHKSPGCSW 654



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/438 (20%), Positives = 187/438 (42%), Gaps = 75/438 (17%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHAH  +TG      +  +   M     C    NL         +  RN   +  ++S  
Sbjct: 81  VHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANL-----VFVKMPQRNLYSWTAILSVH 135

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS----GW 117
             +G    AL  F  + +  I L+ +     L     ++    G+Q+   V K     G 
Sbjct: 136 VDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGS 195

Query: 118 LSSVFVGSALIDL--YAKLLL-------IHDAELMFDEIPV--KNSVCANALLSGYCEAK 166
              +F G ++ ++  Y  +++       +  A+ +FD++ +  K+++  N+++SGY +  
Sbjct: 196 ALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNL 255

Query: 167 LWAGGLELVR-LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           L+   L + R L+   G++ D FTL ++L ACA +++   G++VHA  + +   L  + F
Sbjct: 256 LFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVR--GLHWNTF 313

Query: 226 MQSSLIEMYGKC-----------GLVTKALQVFN--LAGH--------------RLEGE- 257
           +  +L+EMY KC           G+  +    +N  ++G+              +++G+ 
Sbjct: 314 VGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDG 373

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              +V  W  ++  +  NG+ +  ++L+  M  +  +PD      ++ AC+    +  G 
Sbjct: 374 FEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGK 433

Query: 318 EYFEWMVHDYKLEPGPE---HY-SCLVDLLCRAGELDKAWKLINEMLD------------ 361
           +     VH + +  G E   H  + LVD+  + G +  A ++ N + +            
Sbjct: 434 Q-----VHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTA 488

Query: 362 ---RGHGSSSVSMWGALL 376
               GHG   ++++  +L
Sbjct: 489 YAMHGHGDEGIALFRNML 506


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 245/445 (55%), Gaps = 47/445 (10%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           NL TL N  K+++  N   +N VI++  R+G  + AL+ FS M    +  +      ++ 
Sbjct: 27  NLTTLFN--KYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIK 84

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           + +++ D   G+Q        G+   +FV SAL+D+Y+K   + DA  +FDEI  +N V 
Sbjct: 85  SCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVS 144

Query: 155 ANALLSGYCEA-------KLWAG------------------------GLELVRLMPALG- 182
             ++++GY +        +++ G                         +E+   M   G 
Sbjct: 145 WTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGE 204

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           ++Y+  TLSA+L ACA   +   G+ +H  +I+    L ++VF+ +S+I+MY KCG V  
Sbjct: 205 INYNAVTLSAVLLACAHSGSQRLGKCIHDQVIK--MGLESNVFVGTSIIDMYCKCGKVEM 262

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A + F+    R+     K+V  W++M+  YG +G+ KE ++++  M M G KP+ + FV+
Sbjct: 263 ARKAFD----RMR---EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVS 315

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           V++ACSH G ++ G  +F+ M H++ +EPG EHY C+VDLL RAG L +A+ LI  M  R
Sbjct: 316 VLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLR 375

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422
                   +WGALL AC      +LG+++A+K  ELDP N G YV+LSN+YA    W+++
Sbjct: 376 ----PDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDV 431

Query: 423 GQLRELMKEKGLKKDVGCSWIEVTG 447
            ++R LMK  GL K  G S +++ G
Sbjct: 432 ERMRILMKNSGLVKPPGFSLVDIKG 456


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/430 (33%), Positives = 224/430 (52%), Gaps = 45/430 (10%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA-STSVKDARFGKQV 108
            P+ +N +IS   R G    +  +F  M   G         S L+A     +D   G QV
Sbjct: 86  TPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQV 145

Query: 109 QAHVTKSGWLSSVFVGSALIDLYA-------------------------------KLLLI 137
              V  SG L  + V +AL+D+YA                               +L  +
Sbjct: 146 HGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQV 205

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
            +A  +FD +P +++V   A++ GY  A  +   LE+ R M    +  D FT+ +++ AC
Sbjct: 206 DEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITAC 265

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A L A E G  V  YM R+   +  D F+ ++LI+MY KCG + +AL VF    HR    
Sbjct: 266 AQLGALEMGEWVRVYMSRQGIKM--DAFVGNALIDMYSKCGSIERALDVFKGMHHR---- 319

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              D   WT+++     NGY +E I+++  M+     PDEV F+ V++AC+H G V  G 
Sbjct: 320 ---DKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGR 376

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           E+F  M+  Y + P   HY C++DLL RAG++ +A   I++M      + + ++WG LL+
Sbjct: 377 EFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQM----PMTPNSTIWGTLLA 432

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           AC   G  E+G+L A++ LELDP N  +Y++LSN+YAK   W+++ +LR  + EKG+KK+
Sbjct: 433 ACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKE 492

Query: 438 VGCSWIEVTG 447
            GCS IE+ G
Sbjct: 493 PGCSLIEMDG 502


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 152/432 (35%), Positives = 249/432 (57%), Gaps = 24/432 (5%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTF 74
           I  + LM  Y+ C      G + +  K  +    R+ + +N ++    +NG    AL  F
Sbjct: 83  ITSNMLMNMYSKC------GLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLF 136

Query: 75  SFMHVHGIFLDTYALCSSLTASTSVKDARFG-KQVQAHVTKSGWLSSVFVGSALIDLYAK 133
             M   GI    + + SS+  + + K   F  KQ+     K+   S+VFVG+AL+D+YAK
Sbjct: 137 MQMQKEGISCSEFTV-SSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAK 195

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
             L+ DA L+F+ +P ++ V  +++++GY + +L+   L L     A+GL+++ FT+S+ 
Sbjct: 196 CGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSA 255

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA  +A   G+QV A + +    +G+++F+ SSLI+MY KCG++ +A  VF+     
Sbjct: 256 LSACAARAALIEGKQVQAVLCK--TGIGSNIFVISSLIDMYAKCGIIEEAYIVFSSVE-- 311

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                 K+VVLW +ML  + R+    E +  +E M   G  P+E+ +++V++ACSH G V
Sbjct: 312 -----EKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLTACSHLGLV 366

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G +YF+ M+  + + P   HYSC+VD+L RAG L +A  LI    DR    ++ SMWG
Sbjct: 367 EKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLI----DRMPFDATASMWG 422

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           +LL++C      E  ++AA+   E++PHN G +V+LSN+YA    W+E+ + R L+KE  
Sbjct: 423 SLLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIYAANNRWEEVARARNLLKESK 482

Query: 434 LKKDVGCSWIEV 445
            KK+ G SWIE+
Sbjct: 483 AKKERGKSWIEI 494



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 137/287 (47%), Gaps = 19/287 (6%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L +S   + A  G    A + + G  +     + L+++Y+K  L+  A  +FDE+PV++ 
Sbjct: 54  LQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSL 113

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  N ++  + +       L L   M   G+    FT+S+++ ACA        +Q+H +
Sbjct: 114 VSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHGF 173

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            ++    L ++VF+ ++L+++Y KCGLV  A  VF     R +       V W+SM+  Y
Sbjct: 174 ALKTA--LDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSD-------VTWSSMVAGY 224

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            +N  ++E + L+      G + ++    T+ SA S        IE  +      K   G
Sbjct: 225 VQNELYEEALVLFHRAQAMGLEHNQ---FTISSALSACAARAALIEGKQVQAVLCKTGIG 281

Query: 333 PEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
              +  S L+D+  + G +++A+ + + + ++     +V +W A+LS
Sbjct: 282 SNIFVISSLIDMYAKCGIIEEAYIVFSSVEEK-----NVVLWNAMLS 323


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 226/394 (57%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I    +NG P  AL  +  M   G+  D + + S L+A   +K    GK++   + 
Sbjct: 470 WNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSML 529

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           ++G+    F+  +L+ LY +   I  A+L FD +  KN VC N +++G+ + +     L+
Sbjct: 530 RNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALD 589

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M +  +  D  ++   L AC+ +SA   G+++H + ++   +L    F+  SLI+M
Sbjct: 590 MFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKS--HLTEHSFVTCSLIDM 647

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG + ++  +F+     L+GE     V W  ++  YG +G+ ++ I+L+++M   G 
Sbjct: 648 YAKCGCMEQSQNIFDRV--HLKGE-----VTWNVLITGYGIHGHGRKAIELFKSMQNAGF 700

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +PD V F+ +++AC+H G V  G+EY   M   + ++P  EHY+C+VD+L RAG L++A 
Sbjct: 701 RPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEAL 760

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           +L+NE+ D+        +W +LLS+C +    ++G+  A K LEL P     YV++SN Y
Sbjct: 761 ELVNELPDK----PDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFY 816

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A+   WDE+ ++R+ MKE GL+KD GCSWIE+ G
Sbjct: 817 ARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGG 850



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 150/309 (48%), Gaps = 20/309 (6%)

Query: 106 KQVQAHVTKSGWLSS-VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           K++  +  + G++ S   V +A +  YAK   +H AE +F  +  K     NAL+ G+ +
Sbjct: 420 KEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQ 479

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L+L  LM   GL+ D FT+++LL ACA L +   G+++H  M+R    L  D 
Sbjct: 480 NGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFEL--DE 537

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+  SL+ +Y +CG +  A   F+     +E    K++V W +M+  + +N +  + + +
Sbjct: 538 FICISLVSLYVQCGKILLAKLFFD----NME---EKNLVCWNTMINGFSQNEFPFDALDM 590

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC-LVDLL 343
           +  ML +   PDE++ +  + ACS    ++LG E   + V  +  E      +C L+D+ 
Sbjct: 591 FHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHS--FVTCSLIDMY 648

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPH 401
            + G ++++      + DR H    V+ W  L++    H  G+  +    + +     P 
Sbjct: 649 AKCGCMEQS----QNIFDRVHLKGEVT-WNVLITGYGIHGHGRKAIELFKSMQNAGFRPD 703

Query: 402 NVGIYVMLS 410
           +V    +L+
Sbjct: 704 SVTFIALLT 712



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 160/369 (43%), Gaps = 32/369 (8%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPR--NPLPFNVVISDFCRNGSPLYALKTF 74
           ++  +RL+  Y+ C          +CL F   R  N   +N ++S + RN   L+    F
Sbjct: 129 VVLITRLVTMYSICD-----SPYDSCLVFNASRRKNLFLWNALLSGYLRNS--LFRDAVF 181

Query: 75  SFMHVHGI---FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY 131
            F+ +  +     D + L   + A   V D R G+ V     K+  LS VFVG+ALI +Y
Sbjct: 182 VFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMY 241

Query: 132 AKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR--LMPALGLDYDHFT 189
            K   +  A  +FD++P +N V  N+++    E  ++     L +  L    GL  D  T
Sbjct: 242 GKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVAT 301

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           +  ++  CA       G   H   ++    L  ++ + SSL++MY KCG + +A  +F+ 
Sbjct: 302 MVTVIPLCARQGEVRLGMVFHGLALK--LGLCGELKVNSSLLDMYSKCGYLCEARVLFDT 359

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKPDEVAFVTVISACS 308
                     K+V+ W SM+G Y ++  F+   +L   M M +  K +EV  + V+  C 
Sbjct: 360 N--------EKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCE 411

Query: 309 HTGQ-VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
              Q +KL        +H Y L  G      LV     AG          E +  G  S 
Sbjct: 412 EEIQFLKLK------EIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESK 465

Query: 368 SVSMWGALL 376
            VS W AL+
Sbjct: 466 MVSSWNALI 474



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 13/224 (5%)

Query: 100 KDARFGKQVQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           K+   G+++   ++ S  + + V + + L+ +Y+     +D+ L+F+    KN    NAL
Sbjct: 107 KNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNAL 166

Query: 159 LSGYCEAKLWAGGL-ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           LSGY    L+   +   V ++       D+FTL  +++AC G+     G  VH + ++  
Sbjct: 167 LSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKT- 225

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
             + +DVF+ ++LI MYGK G V  A++VF+    R       ++V W S++     NG 
Sbjct: 226 -KVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQR-------NLVSWNSVMYACLENGV 277

Query: 278 FKEVIKLYEAMLM--NGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           F+E   L++ +L    G  PD    VTVI  C+  G+V+LG+ +
Sbjct: 278 FEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVF 321



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 15/228 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  +N + +N +I+ F +N  P  AL  F  M    I+ D  ++  +L A + V   R G
Sbjct: 563 MEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLG 622

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++     KS      FV  +LID+YAK   +  ++ +FD + +K  V  N L++GY   
Sbjct: 623 KELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIH 682

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRAC--AGLSAA--EFGRQVHAYMIRKCCNLG 221
                 +EL + M   G   D  T  ALL AC  AGL A   E+  Q+ +        + 
Sbjct: 683 GHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLF-----GIK 737

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
             +   + +++M G+ G + +AL++ N      E     D  +W+S+L
Sbjct: 738 PKLEHYACVVDMLGRAGRLNEALELVN------ELPDKPDSRIWSSLL 779



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 23/199 (11%)

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           LL+ C      E GR++H + I    +  NDV + + L+ MY  C     +  VFN A  
Sbjct: 99  LLQLCGEYKNIEIGRKIHNF-ISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFN-ASR 156

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTG 311
           R      K++ LW ++L  Y RN  F++ + ++  M+ +    PD      VI AC    
Sbjct: 157 R------KNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
            V+LG       VH + L+          + L+ +  + G ++ A K+ ++M  R     
Sbjct: 211 DVRLG-----EAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQR----- 260

Query: 368 SVSMWGALLSACHDCGKFE 386
           ++  W +++ AC + G FE
Sbjct: 261 NLVSWNSVMYACLENGVFE 279


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 150/482 (31%), Positives = 246/482 (51%), Gaps = 50/482 (10%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           V  H        +  +   S L+  Y+ C    N+         +  RN + +N +I+ F
Sbjct: 172 VQVHSLIAKSPFLSDVYIGSALVDMYSKC---GNVNDAQRVFDEMGDRNVVSWNSLITCF 228

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL-SS 120
            +NG  + AL  F  M    +  D   L S ++A  S+   + G++V   V K+  L + 
Sbjct: 229 EQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRND 288

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK-------------- 166
           + + +A +D+YAK   I +A  +FD +P++N +   +++SGY  A               
Sbjct: 289 IILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAE 348

Query: 167 --------LWAG---------GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
                   L AG          L L  L+    +   H++ + +L+ACA L+    G Q 
Sbjct: 349 RNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQA 408

Query: 210 HAYMIRKCCNLG----NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           H ++++          +D+F+ +SLI+MY KCG V +   VF          + +D V W
Sbjct: 409 HVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-------MERDCVSW 461

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            +M+  + +NGY  E ++L+  ML +G KPD +  + V+SAC H G V+ G  YF  M  
Sbjct: 462 NAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTR 521

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           D+ + P  +HY+C+VDLL RAG L++A  +I EM  +     SV +WG+LL+AC      
Sbjct: 522 DFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQ---PDSV-IWGSLLAACKVHRNI 577

Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            LGK  A+K LE++P N G YV+LSN+YA+   W+++  +R+ M+++G+ K  GCSWI++
Sbjct: 578 TLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKI 637

Query: 446 TG 447
            G
Sbjct: 638 QG 639



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 184/349 (52%), Gaps = 30/349 (8%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + +  R+   +N ++S F ++     AL  F+ MH  G  L+ Y+  S L+A + + D 
Sbjct: 109 FRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDM 168

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             G QV + + KS +LS V++GSAL+D+Y+K   ++DA+ +FDE+  +N V  N+L++ +
Sbjct: 169 NKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCF 228

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       L++ ++M    ++ D  TL++++ ACA LSA + G++VH  ++ K   L N
Sbjct: 229 EQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVV-KNDKLRN 287

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI----------- 258
           D+ + ++ ++MY KC  + +A  +F+             ++G+ +               
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMA 347

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            ++VV W +++  Y +NG  +E + L+  +      P   +F  ++ AC+   ++ LG++
Sbjct: 348 ERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQ 407

Query: 319 -YFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDR 362
            +   + H +K + G E      + L+D+  + G +++ + +  +M++R
Sbjct: 408 AHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMER 456



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 41/346 (11%)

Query: 83  FLDTYALCSSLTASTSVK-DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE 141
           F D+      L +    K  A + + V A V KSG+ + +F+ + LID Y+K   + D  
Sbjct: 16  FTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGR 75

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-------------------- 181
            +FD++P +N    N++++G  +         L R MP                      
Sbjct: 76  QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135

Query: 182 -----------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
                      G   + ++ +++L AC+GL+    G QVH+ +I K   L +DV++ S+L
Sbjct: 136 ALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHS-LIAKSPFL-SDVYIGSAL 193

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           ++MY KCG V  A +VF+  G R       +VV W S++  + +NG   E + +++ ML 
Sbjct: 194 VDMYSKCGNVNDAQRVFDEMGDR-------NVVSWNSLITCFEQNGPAVEALDVFQMMLE 246

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           +  +PDEV   +VISAC+    +K+G E    +V + KL       +  VD+  +   + 
Sbjct: 247 SRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIK 306

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
           +A  + + M  R   + +  + G  ++A     +    K+A +  +
Sbjct: 307 EARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVV 352


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  244 bits (624), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 235/436 (53%), Gaps = 47/436 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  +N + +N +I+ + +NG  + AL+ F  M   G   D   L S ++A  ++   + G
Sbjct: 217 MEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEG 276

Query: 106 KQVQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            Q+ A V KS  + + + +G+AL+D+YAK   +++A  +FD +PV+N+V    ++SGY +
Sbjct: 277 VQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAK 336

Query: 165 AK----------------------LWAG---------GLELVRLMPALGLDYDHFTLSAL 193
           +                       L AG          L L R++    +   H+T   L
Sbjct: 337 SASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNL 396

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGN----DVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L A A L+  E GRQ H+++++      +    D+F+ +SLI+MY KCG V + L+VF  
Sbjct: 397 LNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVF-- 454

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                E  + KD V W +M+  Y +NGY  E ++L++ ML +G KPD V  +  + ACSH
Sbjct: 455 -----ENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSH 509

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
            G V+ G  YF  M  ++ L P  +HY+C+VDLL RAG L++A  LI  M  +       
Sbjct: 510 AGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQ----PDA 565

Query: 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
            +W +LLSAC       LGK  A+K  E+DP + G YV+L+N+Y++   W +   +R+LM
Sbjct: 566 VVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLM 625

Query: 430 KEKGLKKDVGCSWIEV 445
           + +G+ K  GCSWI++
Sbjct: 626 RRRGVVKQPGCSWIDI 641



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 173/353 (49%), Gaps = 30/353 (8%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
              +  ++   +N +I+ F ++     AL  F  MH     L+ Y+  S L+A + +KD 
Sbjct: 113 FSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDL 172

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           + G Q+   ++KS +   VF+GS LID Y+K  L+  A  +FD +  KN V  N L++ Y
Sbjct: 173 KLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCY 232

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       LE    M  LG   D  TL++++ ACA L+A + G Q+HA ++ K     N
Sbjct: 233 EQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVV-KSDKFRN 291

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI----------- 258
           D+ + ++L++MY KCG V +A  VF+             ++G+     +           
Sbjct: 292 DLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIK 351

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            KD+V W +++  Y +NG  +E + L+  +      P    F  +++A ++   ++LG +
Sbjct: 352 QKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQ 411

Query: 319 YFEWMV-HDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
               +V H ++ + G E      + L+D+  + G +++  ++   M+++ H S
Sbjct: 412 AHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVS 464



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 144/328 (43%), Gaps = 40/328 (12%)

Query: 82  IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE 141
            F D+      L     ++ +R  + V   + ++ +   VF+ + LID+Y K   +  A 
Sbjct: 20  FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79

Query: 142 LMFDEIPVKNSVCANALLS-----GYCEAKLW-----------------AGGLELVRLMP 179
            +FD +  +N    N+++S     G+ +   W                 AG  +  R   
Sbjct: 80  KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEE 139

Query: 180 ALG----LDYDHFTLS-----ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
           AL     +  D F L+     + L AC+ L   + G Q+H  + +   +L  DVFM S L
Sbjct: 140 ALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSL--DVFMGSGL 197

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           I+ Y KCGLV  A +VF+       G   K+VV W  ++  Y +NG   E ++ +  M  
Sbjct: 198 IDFYSKCGLVGCARRVFD-------GMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTE 250

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G KPDEV   +V+SAC+     K G++    +V   K        + LVD+  + G ++
Sbjct: 251 LGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVN 310

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +A  + + M  R   S +  + G   SA
Sbjct: 311 EARCVFDRMPVRNAVSETTMVSGYAKSA 338


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  244 bits (624), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 235/447 (52%), Gaps = 18/447 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HAH  E+       +   + L   Y  C   K+   +  CL +   R+ + +N +I  
Sbjct: 251 QIHAHIVESEYH--SDVRVSTALTKMYMKCGAFKDAREVFECLSY---RDVIAWNTMIRG 305

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F  +G    A  TF  M   G+  D     + L+A         GK++ A   K G +S 
Sbjct: 306 FVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSD 365

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           V  G+ALI++Y+K   + DA  +FD +P ++ V    LL  Y +           + M  
Sbjct: 366 VRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQ 425

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  +  T   +L+AC+   A ++G+++HA +++    L  D+ + ++L+ MY KCG V
Sbjct: 426 QGVKANKITYMCVLKACSNPVALKWGKEIHAEVVK--AGLLADLAVTNALMSMYFKCGSV 483

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A++VF       EG   +DVV W +++G  G+NG   E ++ YE M   G +P+   F
Sbjct: 484 EDAIRVF-------EGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATF 536

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V V+SAC     V+ G   F +M  DY + P  +HY+C+VD+L RAG L +A  +I  + 
Sbjct: 537 VNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIP 596

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +     S +MWGALL+AC      E+G+ AA+  L+L+P N G+YV LS +YA   MW 
Sbjct: 597 LK----PSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWR 652

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVTG 447
           ++ +LR+ MKE+G+KK+ G SWIE+ G
Sbjct: 653 DVAKLRKFMKERGVKKEPGRSWIEIAG 679



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 183/405 (45%), Gaps = 46/405 (11%)

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
             ++H  G  +D+Y     L +    KD   GKQV  H+ + G   +V++ + L+ LYA 
Sbjct: 16  LQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAH 75

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +++A  +FD+   K+ V  N ++SGY    L      L  LM    L+ D FT  ++
Sbjct: 76  CGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSI 135

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L AC+  +   +GR++H  ++     L ND  + ++LI MY KCG V  A +VF+    R
Sbjct: 136 LSACSSPAVLNWGREIHVRVME--AGLANDTTVGNALISMYAKCGSVRDARRVFDAMASR 193

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  D V WT++ G Y  +GY +E +K Y AML    +P  + ++ V+SAC     +
Sbjct: 194 -------DEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAAL 246

Query: 314 KLGIEYFEWMVH-----DYKL--------------EPGPEHYSCL-----------VDLL 343
           + G +    +V      D ++              +   E + CL           +   
Sbjct: 247 EKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGF 306

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK-LAAQKALELDPHN 402
             +G+L++A    + ML+ G      + +  +LSAC   G    GK + A+ A +    +
Sbjct: 307 VDSGQLEEAHGTFHRMLEEGVAPDRAT-YTTVLSACARPGGLARGKEIHARAAKDGLVSD 365

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           V     L N+Y+K     +  Q+ + M     K+DV  SW  + G
Sbjct: 366 VRFGNALINMYSKAGSMKDARQVFDRMP----KRDV-VSWTTLLG 405



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 156/341 (45%), Gaps = 16/341 (4%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           KF N ++ + +NV+IS +   G    A   F+ M    +  D +   S L+A +S     
Sbjct: 88  KFSN-KSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           +G+++   V ++G  +   VG+ALI +YAK   + DA  +FD +  ++ V    L   Y 
Sbjct: 147 WGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 206

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           E+      L+    M    +     T   +L AC  L+A E G+Q+HA+++       +D
Sbjct: 207 ESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVES--EYHSD 264

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V + ++L +MY KCG    A +VF    +R       DV+ W +M+  +  +G  +E   
Sbjct: 265 VRVSTALTKMYMKCGAFKDAREVFECLSYR-------DVIAWNTMIRGFVDSGQLEEAHG 317

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
            +  ML  G  PD   + TV+SAC+  G +  G E       D  L       + L+++ 
Sbjct: 318 TFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD-GLVSDVRFGNALINMY 376

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            +AG +  A ++ + M  R      V  W  LL    DC +
Sbjct: 377 SKAGSMKDARQVFDRMPKR-----DVVSWTTLLGRYADCDQ 412



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 49/283 (17%)

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           W    ++++ +   G   D +    LL++C        G+QVH +++R  C +  +V++ 
Sbjct: 9   WYAPADVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILR--CGVKPNVYIT 66

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L+++Y  CG V +A Q+F+          NK VV W  M+  Y   G  +E   L+  
Sbjct: 67  NTLLKLYAHCGSVNEARQLFDKFS-------NKSVVSWNVMISGYAHRGLAQEAFNLFTL 119

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLL 343
           M     +PD+  FV+++SACS    +  G E     +H   +E G  + +     L+ + 
Sbjct: 120 MQQERLEPDKFTFVSILSACSSPAVLNWGRE-----IHVRVMEAGLANDTTVGNALISMY 174

Query: 344 CRAGELDKAWKLINEMLDR---------------GHGSSSVSMWGAL------------- 375
            + G +  A ++ + M  R               G+G  S+  + A+             
Sbjct: 175 AKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYM 234

Query: 376 --LSACHDCGKFELGKLAAQKALELDPH-NVGIYVMLSNLYAK 415
             LSAC      E GK      +E + H +V +   L+ +Y K
Sbjct: 235 NVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMK 277


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  244 bits (624), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 237/433 (54%), Gaps = 48/433 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I+ + +NG    AL+ F  M   G+  D   L S ++A  S+   + G Q+
Sbjct: 211 RNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQI 270

Query: 109 QAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK- 166
            A V K+  +   + +G+AL+D+YAK   +++A  +FD + ++N V   +++SGY  A  
Sbjct: 271 HARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAAS 330

Query: 167 ---------------------LWAG---------GLELVRLMPALGLDYDHFTLSALLRA 196
                                L AG          L L RL+    +   H+T   LL A
Sbjct: 331 VKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSA 390

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGN----DVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           CA L+    GRQ H +++++     +    D+F+ +SLI+MY KCG +    +VF     
Sbjct: 391 CANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVF----- 445

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
             E    +D V W +++  Y +NGY  E ++++  ML+ G KPD V  + V+ ACSH G 
Sbjct: 446 --EKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGL 503

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           V+ G  YF + + ++ L P  +HY+C+VDLL RAG L++A  LI  M      +    +W
Sbjct: 504 VEEGRHYF-FSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAM----PVNPDAVVW 558

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
           G+LL+AC   G  E+GK AA+K LE+DP N G YV+LSN+YA+   W ++ ++R+LM+++
Sbjct: 559 GSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQ 618

Query: 433 GLKKDVGCSWIEV 445
           G+ K  GCSWIEV
Sbjct: 619 GVTKQPGCSWIEV 631



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 176/339 (51%), Gaps = 32/339 (9%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++S F ++     +L+ F  MH     L+ Y+  S+L+A   + D   G QV A V+
Sbjct: 115 WNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVS 174

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           KS + + V++GSALID+Y+K   +  AE +F  +  +N V  N+L++ Y +    +  LE
Sbjct: 175 KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALE 234

Query: 174 L-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           + VR+M + GL+ D  TL++++ ACA L A + G Q+HA ++ K     +D+ + ++L++
Sbjct: 235 VFVRMMDS-GLEPDEVTLASVVSACASLCALKEGLQIHARVV-KTNKFRDDLVLGNALVD 292

Query: 233 MYGKCGLVTKALQVFN-------------LAGHRLEGEI-----------NKDVVLWTSM 268
           MY KC  V +A +VF+             ++G+     +            ++VV W ++
Sbjct: 293 MYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNAL 352

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDY 327
           +  Y +NG  +E ++L+  +      P    F  ++SAC++   + LG + +   +   +
Sbjct: 353 IAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGF 412

Query: 328 KLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDR 362
           + + G E      + L+D+  + G ++   ++  +M +R
Sbjct: 413 EFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKER 451



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 160/356 (44%), Gaps = 45/356 (12%)

Query: 77  MHVHGIFLDTYALCSS-----LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY 131
           M  HG+  D Y   SS     L +    + AR  + V A +  + +   +F+ + LID+Y
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVY 60

Query: 132 AKLLLIHDAELMFDEIPVKNSVCANALLS------------------------------- 160
            K   + DA  +FD +P +N+   N+L+S                               
Sbjct: 61  GKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVS 120

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           G+ +   +   LE    M       + ++  + L ACAGL     G QVHA + +     
Sbjct: 121 GFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKS--RY 178

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             DV+M S+LI+MY KCG V  A +VF+       G I +++V W S++  Y +NG   E
Sbjct: 179 STDVYMGSALIDMYSKCGSVACAEEVFS-------GMIERNLVTWNSLITCYEQNGPASE 231

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            ++++  M+ +G +PDEV   +V+SAC+    +K G++    +V   K        + LV
Sbjct: 232 ALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALV 291

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
           D+  +  ++++A ++ + M  R   S +  + G   +A     +F   K+  +  +
Sbjct: 292 DMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVV 347



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 141/322 (43%), Gaps = 54/322 (16%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RN + +N +I+ + +NG    AL+ F  +    I+   Y   + L+A  ++ D   G
Sbjct: 341 MTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLG 400

Query: 106 KQVQAHVTK------SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           +Q   HV K      SG  S +FVG++LID+Y K   I D   +F+++  ++ V  NA++
Sbjct: 401 RQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAII 460

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
            GY +    A  L++ R M   G   DH T+  +L AC+     E GR     M      
Sbjct: 461 VGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM------ 514

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
                       E +G          +  L  H            +T M+ + GR G   
Sbjct: 515 ------------EEHG----------LIPLKDH------------YTCMVDLLGRAGCLN 540

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E   L EAM +N   PD V + ++++AC   G +++G    E ++       GP  Y  L
Sbjct: 541 EAKNLIEAMPVN---PDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGP--YVLL 595

Query: 340 VDL---LCRAGELDKAWKLINE 358
            ++   L R G++ +  KL+ +
Sbjct: 596 SNMYAELGRWGDVVRVRKLMRQ 617


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  244 bits (623), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 150/438 (34%), Positives = 238/438 (54%), Gaps = 47/438 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +N +I+ + +NG    ALK F  M   G+  D   L S ++A  ++   + G
Sbjct: 212 MTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEG 271

Query: 106 KQVQAHVTK-SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           +Q+ A V K   + + + +G+AL+D+YAK   I++A ++FD +P+++ V   +++SGY +
Sbjct: 272 QQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAK 331

Query: 165 AK----------------------LWAG---------GLELVRLMPALGLDYDHFTLSAL 193
           A                       L AG          L L RL+    +   H+T   L
Sbjct: 332 ASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNL 391

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNL----GNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L ACA L+  + GRQ H+++++          +DVF+ +SLI+MY KCG V    +VF  
Sbjct: 392 LNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQ- 450

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
             H LE    KD V W +M+  Y +NG+  + ++++  ML +G  PD V  + V+ ACSH
Sbjct: 451 --HMLE----KDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSH 504

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
            G +  G  YF  M   + L P  +HY+C+VDLL RAG L++A  LI EM          
Sbjct: 505 AGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEM----SMQPDA 560

Query: 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
            +WG+LL+AC      +LG+   +K LE+DP N G YV+LSN+YA+   W  + ++R+LM
Sbjct: 561 IVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLM 620

Query: 430 KEKGLKKDVGCSWIEVTG 447
           +++G+ K  GCSWIE+ G
Sbjct: 621 RQRGVVKQPGCSWIEIQG 638



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 180/338 (53%), Gaps = 30/338 (8%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS F ++G    AL  F+ MH HG  ++ Y+  S+L+A   ++D + G Q+ + V 
Sbjct: 119 WNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVY 178

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           +S +LS V++GSAL+D+Y+K   +  A+ +FDE+ V++ V  N+L++ Y +       L+
Sbjct: 179 RSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALK 238

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M   G++ D  TL++++ ACA +SA + G+Q+HA ++ KC    ND+ + ++L++M
Sbjct: 239 IFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVV-KCDEFRNDLILGNALLDM 297

Query: 234 YGKCGLVTKALQVFNL------------------------AGHRLEGEINKDVVLWTSML 269
           Y KC  + +A  +F++                        A +     + KDV+ W +++
Sbjct: 298 YAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALI 357

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYK 328
               +NG  +E + L+  +      P    F  +++AC++   ++LG + +   + H ++
Sbjct: 358 AGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFR 417

Query: 329 LEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDR 362
            + G +      + L+D+  + G ++   ++   ML++
Sbjct: 418 FQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEK 455



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 145/327 (44%), Gaps = 43/327 (13%)

Query: 78  HVHG--IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
           H+ G  +FLD+      L      + AR   +V A + KS + S  F+ + LID+Y K  
Sbjct: 9   HLKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCG 68

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-------------- 181
            +  A  +FD +  +N    N+++  + ++      + +   MP +              
Sbjct: 69  CVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQ 128

Query: 182 -----------------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                            G   + ++  + L ACAGL   + G Q+H+ + R   N  +DV
Sbjct: 129 HGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRS--NYLSDV 186

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           +M S+L++MY KCG V  A  VF+    R         V W S++  Y +NG   E +K+
Sbjct: 187 YMGSALVDMYSKCGRVEYAQSVFDEMTVRSR-------VSWNSLITCYEQNGPVDEALKI 239

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M+  G +PDEV   +V+SAC+    +K G +    +V   +        + L+D+  
Sbjct: 240 FVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYA 299

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSM 371
           +   +++A ++I +M+      S  SM
Sbjct: 300 KCNRINEA-RIIFDMMPIRSVVSETSM 325



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 36/234 (15%)

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
            G  LV+ +    L  D    S LL  CA   +A    +VHA +I+      ++ F+Q+ 
Sbjct: 2   AGNGLVKHLKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKS--PFASETFIQNR 59

Query: 230 LIEMYGKCGLVTKALQVFNL------------------------AGHRLEGEINKDVVLW 265
           LI++YGKCG V  A ++F+                         A H  E     D   W
Sbjct: 60  LIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSW 119

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            SM+  + ++G F E +  +  M  +G   +E +F + +SAC+    +KLG +    +  
Sbjct: 120 NSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLV-- 177

Query: 326 DYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            Y+     + Y  S LVD+  + G ++ A  + +EM  R   S     W +L++
Sbjct: 178 -YRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVS-----WNSLIT 225


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  244 bits (623), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 221/397 (55%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++      G    AL     M   G   D++ L + L       D + G +V
Sbjct: 133 RDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEV 192

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                ++G+ S VFVGS+LID+YA       +  +FD +PV++ +  N+LL+G  +    
Sbjct: 193 HGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSV 252

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L + R M   G+     T S+L+  C  L++  FG+Q+HAY+I  C    ++VF+ S
Sbjct: 253 EEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVI--CGGFEDNVFISS 310

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG ++ A  +F+          + DVV WT+M+  Y  +G  +E + L+E M
Sbjct: 311 SLIDMYCKCGEISIAHCIFDKMS-------SPDVVSWTAMIMGYALHGPAREALVLFERM 363

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            +   KP+ + F+ V++ACSH G V  G +YF+ M + Y + P  EH++ L D L RAGE
Sbjct: 364 ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGE 423

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD+A+  I++M  +     + S+W  LL AC       L +  A+K +EL+P ++G +V+
Sbjct: 424 LDEAYNFISKMQIK----PTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVV 479

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+Y+    W+E   LRE M++KG+KKD  CSWIEV
Sbjct: 480 LSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEV 516



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 138/312 (44%), Gaps = 42/312 (13%)

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL------------- 134
           +L ++L +  ++  +  G  + A   +SG  +  F  +AL++LY K+             
Sbjct: 52  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIV 111

Query: 135 ------LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
                         +FDE+  ++ V  N L+ G  E       L  VR M   G   D F
Sbjct: 112 DVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSF 171

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           TLS +L   A  +  + G +VH +  R      +DVF+ SSLI+MY  C     +++VF+
Sbjct: 172 TLSTVLPIFAECADVKRGLEVHGFAFRN--GFDSDVFVGSSLIDMYANCTRTDYSVKVFD 229

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               R       D +LW S+L    +NG  +E + ++  ML  G +P  V F ++I  C 
Sbjct: 230 NLPVR-------DHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCG 282

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           +   ++ G +     +H Y +  G E      S L+D+ C+ GE+  A  + ++M     
Sbjct: 283 NLASLRFGKQ-----LHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKM----- 332

Query: 365 GSSSVSMWGALL 376
            S  V  W A++
Sbjct: 333 SSPDVVSWTAMI 344


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  244 bits (622), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 136/392 (34%), Positives = 213/392 (54%), Gaps = 13/392 (3%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
             +IS +  NG    AL+ F ++    +   +    S   A   +     GK++   + K
Sbjct: 330 TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIK 389

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           +       VGSA++D+YAK   +  A  +F+ I  K+++C N++++   +       + L
Sbjct: 390 TKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINL 449

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M   G  YD  ++S  L ACA L A  +G+++H  MI+    L +D++ +SSLI+MY
Sbjct: 450 FRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG--PLRSDLYAESSLIDMY 507

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG +  + +VF+    R E       V W S++  YG +G  KE + L+  ML NG +
Sbjct: 508 AKCGNLNFSRRVFDRMQERNE-------VSWNSIISAYGNHGDLKECLALFHEMLRNGIQ 560

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           PD V F+ +ISAC H GQV  GI Y+  M  +Y +    EHY+C+ D+  RAG LD+A++
Sbjct: 561 PDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFE 620

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
            IN M           +WG LL ACH  G  EL ++A++   +LDP N G YV+L+N+ A
Sbjct: 621 TINSM----PFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQA 676

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
               W ++ ++R +MKE+G++K  G SWIEV 
Sbjct: 677 GAGKWRKVLKVRSIMKERGVRKVPGYSWIEVN 708



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 159/341 (46%), Gaps = 16/341 (4%)

Query: 47  NPRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +P++ L  +N +IS + +NG    A   F  M   GI  D+    S L     +   +  
Sbjct: 220 SPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHC 279

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++  ++ +   +  VF+ SALID+Y K   +  A+ +  +    ++V    ++SGY   
Sbjct: 280 KEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLN 339

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 LE  R +    +     T S++  A AGL+A   G+++H  +I+    L     
Sbjct: 340 GKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT--KLDEKCH 397

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S++++MY KCG +  A +VFN    R+     KD + W SM+    +NG   E I L+
Sbjct: 398 VGSAILDMYAKCGRLDLACRVFN----RI---TEKDAICWNSMITSCSQNGRPGEAINLF 450

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M M GT+ D V+    +SAC++   +  G E    M+    L       S L+D+  +
Sbjct: 451 RQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG-PLRSDLYAESSLIDMYAK 509

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            G L+ + ++ + M +R   S     W +++SA  + G  +
Sbjct: 510 CGNLNFSRRVFDRMQERNEVS-----WNSIISAYGNHGDLK 545



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 118/251 (47%), Gaps = 9/251 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I  F   G   YAL  +  M   G+  D Y     + A   +K  + GK V   V 
Sbjct: 26  WNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVN 85

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
             G    VFVGS+LI LYA+   + DA+ +FD IP K+SV  N +L+GY +       ++
Sbjct: 86  LMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIK 145

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M    +  +  T + +L  CA  +  + G Q+H   I   C L  D  + ++L+ M
Sbjct: 146 IFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHG--IAVSCGLELDSPVANTLLAM 203

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KC  +  A ++F+ +          D+V W  ++  Y +NG   E   L+  M+  G 
Sbjct: 204 YSKCQCLQAARKLFDTSPQ-------SDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGI 256

Query: 294 KPDEVAFVTVI 304
           KPD + F + +
Sbjct: 257 KPDSITFASFL 267



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 104/227 (45%), Gaps = 11/227 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +N +I+   +NG P  A+  F  M + G   D  ++  +L+A  ++    +G
Sbjct: 422 ITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYG 481

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   + K    S ++  S+LID+YAK   ++ +  +FD +  +N V  N+++S Y   
Sbjct: 482 KEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNH 541

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L L   M   G+  DH T   ++ AC      + G + +  M  +    G    
Sbjct: 542 GDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEE---YGIPAR 598

Query: 226 MQ--SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           M+  + + +M+G+ G + +A +  N            D  +W ++LG
Sbjct: 599 MEHYACVADMFGRAGRLDEAFETIN------SMPFPPDAGVWGTLLG 639


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  244 bits (622), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 245/450 (54%), Gaps = 31/450 (6%)

Query: 1   NVHAHQFETGLLLICL-----IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFN 55
            +HAH  + GL  I L     I   S+  LP  +      L       K    ++   ++
Sbjct: 46  QLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFS------LQVFDETPK----KSSTTWS 95

Query: 56  VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
            VIS F +N +PL AL+ F  M   G+  D +   S+  A   ++ +  GK V     K+
Sbjct: 96  SVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKT 155

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G+   VFVGS+L+D+YAK   I DA  +FDE+P +N V  + ++ GY +       L L 
Sbjct: 156 GYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLF 215

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           +      +D + FT S+++R C+  +  E G+ +H   ++   +  +  F+ S+LI +Y 
Sbjct: 216 KQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLK--MSFDSSSFVGSALISLYS 273

Query: 236 KCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
           KCG++  A QVF+        EI  +++ LW SML    ++ + + V  L+E M   G K
Sbjct: 274 KCGVIEGAYQVFD--------EIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMK 325

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           P+ ++F++V+ ACSH G V+ G EYF  M  DY +EP  EHY+ LVDLL RAG+L +A  
Sbjct: 326 PNFISFLSVLYACSHAGLVEKGREYFSLM-RDYGIEPETEHYASLVDLLGRAGKLQEAVS 384

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
           +I +M  R     + S+WGALL+ C      E+    A + LE+D  + G++V+LSN YA
Sbjct: 385 VIKQMPMR----PTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYA 440

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
               ++E  ++R++++++G+KK+ G SW+E
Sbjct: 441 AAGRYEEAARMRKMLRDRGVKKETGLSWVE 470



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 139/291 (47%), Gaps = 15/291 (5%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           +C+ L + T  +  R G Q+ AH+ K G  +   V   LI+LY+K  L   +  +FDE P
Sbjct: 28  ICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETP 87

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
            K+S   ++++S + + +     L+  R M   G+  D     +  +AC  L  ++ G+ 
Sbjct: 88  KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS 147

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           VH   ++       DVF+ SSL++MY KCG +  A  +F+    R       +VV W+ M
Sbjct: 148 VHCLAVK--TGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPER-------NVVSWSGM 198

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y +     E + L++  L+     ++  F +VI  CS +  ++LG +    +     
Sbjct: 199 IYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELG-KLIHGLCLKMS 257

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
            +      S L+ L  + G ++ A+++ +E+  R  G     +W ++L AC
Sbjct: 258 FDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLG-----LWNSMLIAC 303


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  244 bits (622), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 144/415 (34%), Positives = 225/415 (54%), Gaps = 14/415 (3%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALC 90
           +H K L T    L+ L   + + +  +IS + ++     ALK F  M   GI  D     
Sbjct: 462 KHGK-LDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFS 520

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S+++A   ++    G+Q+ A    SG+   + +G+AL+ LYA+   I +A L F++I  K
Sbjct: 521 SAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAK 580

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           +S+  N L+SG+ ++      L++   M    L+   FT  + + A A ++  + G+Q+H
Sbjct: 581 DSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIH 640

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           A +I++     +D+ + ++LI  Y KCG +  A + F            K+ V W +M+ 
Sbjct: 641 AMIIKR--GFDSDIEVSNALITFYAKCGSIEDARREFCEMPE-------KNDVSWNAMIT 691

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y ++GY  E + L+E M   G  P+ V FV V+SACSH G V  G+ YFE M  ++ L 
Sbjct: 692 GYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLV 751

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
           P P HY+C+VDL+ RAG L +A K I EM          ++W  LLSAC      E+G+ 
Sbjct: 752 PKPAHYACVVDLISRAGFLSRARKFIEEMPIE----PDATIWRTLLSACTVHKNVEVGEF 807

Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           AAQ  LEL+P +   YV+LSN+YA    WD   Q R++M+ +G+KK+ G SWIEV
Sbjct: 808 AAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEV 862



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 166/333 (49%), Gaps = 23/333 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +IS F +NG    A+  F  MH  GIF   Y   S L+  T +K    G+Q+
Sbjct: 176 KDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQL 235

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V K G     +V +AL+ LY+++     AE +F ++  K+ V  N+L+SG  +    
Sbjct: 236 HALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFS 295

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G LEL   M    L  D  T+++LL ACA   A   G Q+H+Y+I+    + +D+ ++ 
Sbjct: 296 DGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIK--AGISSDMIVEG 353

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+++Y  C  +  A ++F  A         ++VVLW  ML  +G+     E  +++  M
Sbjct: 354 ALLDLYVNCSDIKTAHEMFLTAQ-------TENVVLWNVMLVAFGKLDNLSESFRIFRQM 406

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH--YSC--LVDLLC 344
            + G  P++  + +++  C+  G + LG +     +H   ++ G +   Y C  L+D+  
Sbjct: 407 QIKGLIPNQFTYPSILRTCTSVGALDLGEQ-----IHTQVIKTGFQFNVYVCSVLIDMYA 461

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + G+LD A  ++  + +       V  W AL+S
Sbjct: 462 KHGKLDTAHVILRTLTE-----DDVVSWTALIS 489



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 186/420 (44%), Gaps = 20/420 (4%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I +  L+  Y  C    ++ T           N + +NV++  F +  +   + + F  
Sbjct: 349 MIVEGALLDLYVNC---SDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQ 405

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M + G+  + +   S L   TSV     G+Q+   V K+G+  +V+V S LID+YAK   
Sbjct: 406 MQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGK 465

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A ++   +   + V   AL+SGY +  L+A  L+  + M   G+  D+   S+ + A
Sbjct: 466 LDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISA 525

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CAG+ A   GRQ+HA           D+ + ++L+ +Y +CG + +A   F       E 
Sbjct: 526 CAGIQALNQGRQIHAQ--SYVSGYSEDLSIGNALVSLYARCGRIKEAYLEF-------EK 576

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              KD + W  ++  + ++GY ++ +K++  M     +     F + +SA ++   +K G
Sbjct: 577 IDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQG 636

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            +    M+     +   E  + L+    + G ++ A +   EM ++   S     W A++
Sbjct: 637 -KQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVS-----WNAMI 690

Query: 377 S--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           +  + H  G   +      K +   P++V    +LS       +   +G    + KE GL
Sbjct: 691 TGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGL 750



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 21/341 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + FN +IS   + G    AL+ F+ M    +  D   + S L+A  S      G
Sbjct: 274 MQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKG 333

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ ++V K+G  S + V  AL+DLY     I  A  MF     +N V  N +L  + + 
Sbjct: 334 EQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKL 393

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              +    + R M   GL  + FT  ++LR C  + A + G Q+H  +I+       +V+
Sbjct: 394 DNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQF--NVY 451

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S LI+MY K G +  A  +       L      DVV WT+++  Y ++  F E +K +
Sbjct: 452 VCSVLIDMYAKHGKLDTAHVI-------LRTLTEDDVVSWTALISGYAQHNLFAEALKHF 504

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYK--LEPGPEHYSCLVDL 342
           + ML  G + D + F + ISAC+    +  G + + +  V  Y   L  G    + LV L
Sbjct: 505 KEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIG----NALVSL 560

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
             R G + +A+ L  E +D      S+S W  L+S     G
Sbjct: 561 YARCGRIKEAY-LEFEKID---AKDSIS-WNGLISGFAQSG 596



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 137/308 (44%), Gaps = 18/308 (5%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   + K G+ +   + + L+D+Y  L  +     +F+++P ++    + ++SG+ E 
Sbjct: 30  KKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEK 89

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS-AAEFGRQVHAYMIRKCCNLGNDV 224
           K+    L+L   M    +     + +++LRAC+G      +  Q+HA +I  C  L    
Sbjct: 90  KMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARII--CHGLLCSP 147

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + + LI +Y K GL+  A +VF       +    KD V W +M+  + +NGY +E I L
Sbjct: 148 IISNPLIGLYAKNGLIISARKVF-------DNLCTKDSVSWVAMISGFSQNGYEEEAIHL 200

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVDL 342
           +  M   G  P    F +V+S C+      +G E    +V  +K     E Y C  LV L
Sbjct: 201 FCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVG-EQLHALV--FKYGSSLETYVCNALVTL 257

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
             R      A K+ ++M  +   S +  + G       D G  EL      K   L P  
Sbjct: 258 YSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSD-GALEL--FTKMKRDYLKPDC 314

Query: 403 VGIYVMLS 410
           V +  +LS
Sbjct: 315 VTVASLLS 322



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 180/415 (43%), Gaps = 45/415 (10%)

Query: 36  LGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           LG L   +K       R+   ++ +IS F         L  FS M    +     +  S 
Sbjct: 58  LGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASV 117

Query: 93  LTASTSVK-DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           L A +  +   R+ +Q+ A +   G L S  + + LI LYAK  LI  A  +FD +  K+
Sbjct: 118 LRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKD 177

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           SV   A++SG+ +       + L   M   G+    +  S++L  C  +   + G Q+HA
Sbjct: 178 SVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHA 237

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            + +   +L  + ++ ++L+ +Y +      A +VF+    +++   +KD V + S++  
Sbjct: 238 LVFKYGSSL--ETYVCNALVTLYSRMPNFVSAEKVFS----KMQ---SKDEVSFNSLISG 288

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV------- 324
             + G+    ++L+  M  +  KPD V   +++SAC+  G +  G +   +++       
Sbjct: 289 LAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSD 348

Query: 325 --------------------HDYKLEPGPEHYSCLVDLLCRAGELD---KAWKLINEMLD 361
                               H+  L    E+      +L   G+LD   +++++  +M  
Sbjct: 349 MIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQI 408

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNLYAK 415
           +G   +  + + ++L  C   G  +LG+    + ++     NV +  +L ++YAK
Sbjct: 409 KGLIPNQFT-YPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAK 462


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  244 bits (622), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 140/394 (35%), Positives = 217/394 (55%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +  N     A   F  M   G+ +D+  +   +   T  +    G+ +     
Sbjct: 121 YNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECV 180

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G  S V V ++ I +Y K   +     +FDE+PVK  +  NA++SGY +  L    LE
Sbjct: 181 KGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLE 240

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M + G+  D FTL ++L +CA L A + G++V   +  +      +VF+ ++LI M
Sbjct: 241 LFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELV--EANGFAPNVFLSNALISM 298

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y +CG + KA  VF++          K +V WT+M+G YG +G  +  + L++ M+  G 
Sbjct: 299 YARCGNLAKARAVFDIMP-------VKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGI 351

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +PD   FV V+SACSH+G    G+E F  M  +YKLEPGPEHYSCLVDLL RAG LD+A 
Sbjct: 352 RPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAM 411

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           + I+ M     G    ++WGALL AC      ++ +LA  K +E +P N+G YV++SN+Y
Sbjct: 412 EFIDSMPVEPDG----AVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIY 467

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +     + I ++R +M+E+  +K  G S++E  G
Sbjct: 468 SDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKG 501



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 134/275 (48%), Gaps = 24/275 (8%)

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           C+SL+   S      G+Q+  HV + G  +  FV +ALI +Y K  L+ DA  +F+E P 
Sbjct: 60  CASLSLPVS------GQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPH 113

Query: 150 KNS--VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
            +   VC NAL+SGY      +    + R M   G+  D  T+  L+  C        GR
Sbjct: 114 SSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGR 173

Query: 208 QVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVL 264
            +H     +C   G  ++V + +S I MY KCG V         +G RL  E+  K ++ 
Sbjct: 174 SLHG----ECVKGGTYSEVAVLNSFITMYMKCGSVE--------SGRRLFDEMPVKGLIT 221

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +++  Y +NG   +V++L+E M  +G  PD    V+V+S+C+H G  K+G E  E +V
Sbjct: 222 WNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGE-LV 280

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
                 P     + L+ +  R G L KA  + + M
Sbjct: 281 EANGFAPNVFLSNALISMYARCGNLAKARAVFDIM 315



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 7/219 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N VIS + +NG     L+ F  M   G+  D + L S L++   +   + G++V   
Sbjct: 220 ITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGEL 279

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V  +G+  +VF+ +ALI +YA+   +  A  +FD +PVK+ V   A++  Y    +   G
Sbjct: 280 VEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETG 339

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L L   M   G+  D      +L AC+     + G ++   M R+   L       S L+
Sbjct: 340 LTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKRE-YKLEPGPEHYSCLV 398

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           ++ G+ G + +A++  +         +  D  +W ++LG
Sbjct: 399 DLLGRAGRLDEAMEFID------SMPVEPDGAVWGALLG 431



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 127/310 (40%), Gaps = 48/310 (15%)

Query: 149 VKNSVCA----NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           V+NS  A    N  L       L+   + L R M   G   D F+   +L++CA LS   
Sbjct: 8   VRNSAVASTSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPV 67

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G+Q+H ++IR  C    + F+ ++LI MY KCGLV  A +VF    H      ++  V 
Sbjct: 68  SGQQLHCHVIRGGCE--AEPFVLTALISMYCKCGLVEDARKVFEENPHS-----SQLGVC 120

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC----------SHTGQVK 314
           + +++  Y  N    +   ++  M   G   D V  + ++  C          S  G+  
Sbjct: 121 YNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECV 180

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G  Y E  V            +  + +  + G ++   +L +EM  +G     +  W A
Sbjct: 181 KGGTYSEVAV-----------LNSFITMYMKCGSVESGRRLFDEMPVKG-----LITWNA 224

Query: 375 LLSACHDCG----KFELGKLAAQKALELDPHN-VGIYVMLSNLYAKFCMWDEIGQ-LREL 428
           ++S     G      EL +      +  DP   V +    ++L AK     +IGQ + EL
Sbjct: 225 VISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAK-----KIGQEVGEL 279

Query: 429 MKEKGLKKDV 438
           ++  G   +V
Sbjct: 280 VEANGFAPNV 289


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  244 bits (622), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 149/436 (34%), Positives = 235/436 (53%), Gaps = 30/436 (6%)

Query: 17   IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
            +  QS L+  Y  C   ++  ++   +K    R+ + +  +I+ FC+N     AL  F  
Sbjct: 785  VAIQSALLTMYYKCGSTEDADSVFYTMK---ERDVVAWGSMIAGFCQNRRFKDALDLFRA 841

Query: 77   MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
            M   G+  D+  + S ++A   +++   G  +     K G  S VFV  +L+D+Y+K   
Sbjct: 842  MEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGF 901

Query: 137  IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMPAL---GLDYDHFTLSA 192
               AE++F  +P KN V  N+++S Y     W G  E+ + L+P +   G   D  +++ 
Sbjct: 902  AESAEMVFSSMPNKNLVAWNSMISCYS----WNGLPEMSINLLPQILQHGFYLDSVSITT 957

Query: 193  LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
            +L A + ++A   G+ +HAY IR    + +D+ ++++LI+MY KCG +  A  +F     
Sbjct: 958  VLVAVSSVAALLKGKTLHAYQIR--LQIPSDLQVENALIDMYVKCGCLKYAQLIF----- 1010

Query: 253  RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
              E    +++V W SM+  YG +G  +E ++L++ M  + T PDEV F+ +I++CSH+G 
Sbjct: 1011 --ENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGM 1068

Query: 313  VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM---LDRGHGSSSV 369
            V+ G+  F+ M  +Y +EP  EHY+ +VDLL RAG LD A+  I  M    DR       
Sbjct: 1069 VEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADR------- 1121

Query: 370  SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
            S+W  LL AC      ELG+L A   L+++P     YV L NLY +  MWD    LR  M
Sbjct: 1122 SVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASM 1181

Query: 430  KEKGLKKDVGCSWIEV 445
            K +GLKK  GCSWIEV
Sbjct: 1182 KGRGLKKSPGCSWIEV 1197



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 176/363 (48%), Gaps = 25/363 (6%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78
            ++ L+  Y++C       +L    K  N  N + +NV+I  F  NG    +L+ +S   
Sbjct: 584 LETALIGMYSSCSRPMEAWSLFG--KLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAK 641

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
                L + +   + TA +  +   FG+QV   V K  +    +V ++L+ +YAK   + 
Sbjct: 642 NENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVE 701

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           DA+ +FD++  K     NA++S +         L L   M A     D FT+S+LL  C+
Sbjct: 702 DAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCS 761

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            + + +FGR VHA +I++  ++ ++V +QS+L+ MY KCG    A  VF     R     
Sbjct: 762 VVGSYDFGRTVHAEVIKR--SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKER----- 814

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
             DVV W SM+  + +N  FK+ + L+ AM   G K D     +VISA      V+LG  
Sbjct: 815 --DVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELG-- 870

Query: 319 YFEWMVHDYKLEPGPEH---YSC-LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
               ++H + ++ G E     +C LVD+  + G  + A  + + M ++     ++  W +
Sbjct: 871 ---HLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNK-----NLVAWNS 922

Query: 375 LLS 377
           ++S
Sbjct: 923 MIS 925



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 150/308 (48%), Gaps = 11/308 (3%)

Query: 55   NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
            N +IS F  NG    AL  ++ M      +D++ + S L+  + V    FG+ V A V K
Sbjct: 719  NAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIK 778

Query: 115  SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
                S+V + SAL+ +Y K     DA+ +F  +  ++ V   ++++G+C+ + +   L+L
Sbjct: 779  RSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDL 838

Query: 175  VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
             R M   G+  D   +++++ A  GL   E G  +H + I++   L +DVF+  SL++MY
Sbjct: 839  FRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKR--GLESDVFVACSLVDMY 896

Query: 235  GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
             K G    A  VF+          NK++V W SM+  Y  NG  +  I L   +L +G  
Sbjct: 897  SKFGFAESAEMVFS-------SMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFY 949

Query: 295  PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
             D V+  TV+ A S    +  G     + +   ++    +  + L+D+  + G L  A +
Sbjct: 950  LDSVSITTVLVAVSSVAALLKGKTLHAYQIR-LQIPSDLQVENALIDMYVKCGCLKYA-Q 1007

Query: 355  LINEMLDR 362
            LI E + R
Sbjct: 1008 LIFENMPR 1015



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 182/420 (43%), Gaps = 51/420 (12%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           LP    I    + G    AL+  S      +    +   S L    S+ +   G+ + A 
Sbjct: 407 LPQVEEIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHAS 466

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA-----NALLSGYCEAK 166
           +   G  S  ++ ++LI++Y K  L+  A  +FD++             N ++ GY +  
Sbjct: 467 IVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYG 526

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
            +  GL     M  LG+  D ++LS +L  C  LS    GRQ+H Y+IR       D ++
Sbjct: 527 HFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNM--FEGDPYL 584

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           +++LI MY  C   ++ ++ ++L G +LE   N  +V W  M+G +  NG +++ ++LY 
Sbjct: 585 ETALIGMYSSC---SRPMEAWSLFG-KLENRSN--IVAWNVMIGGFVENGMWEKSLELYS 638

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLEPGPEHYSC--LVDLL 343
                  K    +F    +ACSH   +  G + + + +  +++ +P    Y C  L+ + 
Sbjct: 639 LAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDP----YVCTSLLTMY 694

Query: 344 CRAGELDKAWKLINEMLDR---------------GHGSSSVSMW---------------G 373
            ++G ++ A K+ +++LD+               G    ++ ++                
Sbjct: 695 AKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTIS 754

Query: 374 ALLSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
           +LLS C   G ++ G+    + ++     NV I   L  +Y K    ++   +   MKE+
Sbjct: 755 SLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKER 814



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 178/411 (43%), Gaps = 25/411 (6%)

Query: 44  KFLNPRNPLP----FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           K    R+  P    +N VI  + + G     L  F  M   GI  D Y+L   L     +
Sbjct: 501 KMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRL 560

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA-NAL 158
                G+Q+  ++ ++ +    ++ +ALI +Y+      +A  +F ++  ++++ A N +
Sbjct: 561 SWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVM 620

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           + G+ E  +W   LEL  L           + +    AC+     +FGRQVH  +I+   
Sbjct: 621 IGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIK--M 678

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           N  +D ++ +SL+ MY K G V  A +VF+         ++K+V L  +M+  +  NG  
Sbjct: 679 NFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQV-------LDKEVELRNAMISAFIGNGRA 731

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
            + + LY  M    T  D     +++S CS  G    G       V    ++      S 
Sbjct: 732 YDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFG-RTVHAEVIKRSMQSNVAIQSA 790

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           L+ +  + G  + A  +   M +R      V  WG++++      +F+   L   +A+E 
Sbjct: 791 LLTMYYKCGSTEDADSVFYTMKER-----DVVAWGSMIAGFCQNRRFK-DALDLFRAMEK 844

Query: 399 DPHNVGIYVMLSNLYAKFCMWD-EIGQL-RELMKEKGLKKD--VGCSWIEV 445
           +       VM S + A   + + E+G L      ++GL+ D  V CS +++
Sbjct: 845 EGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDM 895


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  244 bits (622), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 220/395 (55%), Gaps = 13/395 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +  +I+ + + G   +A++ F  M    +  + Y   + ++A  ++  A++G+Q+  H
Sbjct: 325 VSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGH 384

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V + G + ++ V ++++ LY+K  L+  A L+F  I  K+ +  + +++ Y +       
Sbjct: 385 VLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEA 444

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
            + +  M   G   + F LS++L  C  ++  E G+QVHA+++  C  + ++  + S+LI
Sbjct: 445 FDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVL--CIGIDHEAMVHSALI 502

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
            MY KCG V +A ++FN       G    +++ WT+M+  Y  +GY +E I L+E +   
Sbjct: 503 SMYSKCGSVEEASKIFN-------GMKINNIISWTAMINGYAEHGYSQEAINLFEKISSV 555

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G KPD V F+ V++ACSH G V LG  YF  M ++Y++ P  EHY C++DLLCRAG L +
Sbjct: 556 GLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSE 615

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
           A  +I  M       +   +W  LL +C   G  + G+  A++ L LDP++ G ++ L+N
Sbjct: 616 AEHMIRSM----PCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALAN 671

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +YA    W E   +R+LMK KG+ K+ G SW+ V 
Sbjct: 672 IYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVN 706



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 137/305 (44%), Gaps = 21/305 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARF 104
           +  R+ + +  +I+ +        AL  FS M V  G+  D + +  +L A     +  F
Sbjct: 116 MTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICF 175

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+ +     KSG ++SVFV SALID+Y K+  I     +F ++  +N V   A+++G   
Sbjct: 176 GELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVH 235

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           A      L     M    + YD  T +  L+A A  S    G+ +H   I++        
Sbjct: 236 AGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQ--GFDESS 293

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++L  MY KCG     +++F       E     DVV WT+++  Y + G  +  ++ 
Sbjct: 294 FVINTLATMYNKCGKADYVMRLF-------EKMKMPDVVSWTTLITTYVQKGEEEHAVEA 346

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           ++ M  +   P++  F  VISAC++    K G +     +H + L  G      LVD L 
Sbjct: 347 FKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQ-----IHGHVLRLG------LVDALS 395

Query: 345 RAGEL 349
            A  +
Sbjct: 396 VANSI 400



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 19/225 (8%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSALLRACA 198
           +  MFD++  ++ +    L++GY  A      L L   M    GL  D F +S  L+AC 
Sbjct: 109 SRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACG 168

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
                 FG  +H + ++    L N VF+ S+LI+MY K G + +  +VF     R     
Sbjct: 169 LGVNICFGELLHGFSVK--SGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKR----- 221

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
             +VV WT+++      GY  E +  +  M ++    D   F   + A + +  +  G  
Sbjct: 222 --NVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKA 279

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLC----RAGELDKAWKLINEM 359
                +H   ++ G +  S +++ L     + G+ D   +L  +M
Sbjct: 280 -----IHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKM 319


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  244 bits (622), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 133/411 (32%), Positives = 227/411 (55%), Gaps = 15/411 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           + ++    + +  ++ + +N VI+ + ++G    AL+    M    +  D + L S L  
Sbjct: 156 IDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPI 215

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
            +   D   GK++  +V + G  S V++GS+L+D+YAK   I D+E +F  +  ++S+  
Sbjct: 216 FSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISW 275

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           N+L++GY +   +   L L R M +  +       S+++ ACA L+    G+Q+H Y++R
Sbjct: 276 NSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 335

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGR 274
                G ++F+ S+L++MY KCG +  A ++F+         +N  D V WT+++  +  
Sbjct: 336 G--GFGRNIFIASALVDMYSKCGNIQAARKIFD--------RMNLHDEVSWTAIIMGHAL 385

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +G+  E + L+E M   G KP++VAFV V++ACSH G V     YF  M   Y L    E
Sbjct: 386 HGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELE 445

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
           HY+ + DLL RAG+L++A+  I++M     G    S+W  LLS+C      EL +  A+K
Sbjct: 446 HYAAVADLLGRAGKLEEAYDFISKMRVEPTG----SVWSTLLSSCSVHKNLELAEKVAEK 501

Query: 395 ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              +D  N+G YV++ N+YA    W E+ +LR  +++KGL+K   CSWIE+
Sbjct: 502 IFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEM 552



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 178/374 (47%), Gaps = 25/374 (6%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            K L     L +  VI  F        AL +F  M   G   D     S L + T + D 
Sbjct: 62  FKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           RFG+ V   + + G    ++ G+AL+++Y+KLL I     +F+ +P K+ V  N +++GY
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGY 181

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            ++ ++   L +VR M    L  D FTLS++L   +       G+++H Y+IRK   + +
Sbjct: 182 AQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRK--GIDS 239

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV++ SSL++MY K   +  + +VF+    R       D + W S++  Y +NG + E +
Sbjct: 240 DVYIGSSLVDMYAKSARIEDSERVFSHLYRR-------DSISWNSLVAGYVQNGRYNEAL 292

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSC 338
           +L+  M+    +P  VAF +VI AC+H   + LG +     +H Y L  G        S 
Sbjct: 293 RLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQ-----LHGYVLRGGFGRNIFIASA 347

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL--SACHDCGKFELGKLAAQKAL 396
           LVD+  + G +  A K+     DR +    VS W A++   A H  G   +      K  
Sbjct: 348 LVDMYSKCGNIQAARKI----FDRMNLHDEVS-WTAIIMGHALHGHGHEAVSLFEEMKRQ 402

Query: 397 ELDPHNVGIYVMLS 410
            + P+ V    +L+
Sbjct: 403 GVKPNQVAFVAVLT 416



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 134/293 (45%), Gaps = 24/293 (8%)

Query: 97  TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
           T +K     KQ+ A   ++  LS     S +I +Y  L L+H+A L+F  +     +   
Sbjct: 16  TRIKSKSQAKQLHAQFIRTQSLSHT-SASIVISIYTNLKLLHEALLVFKTLESPPVLAWK 74

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           +++  + +  L++  L     M A G   DH    ++L++C  +    FG  VH +++R 
Sbjct: 75  SVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVR- 133

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
              +  D++  ++L+ MY K   +    +VF L          KDVV + +++  Y ++G
Sbjct: 134 -LGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMP-------RKDVVSYNTVIAGYAQSG 185

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
            +++ +++   M  +  KPD     +V+   S    V  G E     +H Y +  G +  
Sbjct: 186 MYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKE-----IHGYVIRKGIDSD 240

Query: 337 ----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
               S LVD+  ++  ++ + ++ + +  R     S+S W +L++     G++
Sbjct: 241 VYIGSSLVDMYAKSARIEDSERVFSHLYRR----DSIS-WNSLVAGYVQNGRY 288


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 149/436 (34%), Positives = 235/436 (53%), Gaps = 30/436 (6%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +  QS L+  Y  C   ++  ++   +K    R+ + +  +I+ FC+N     AL  F  
Sbjct: 380 VAIQSALLTMYYKCGSTEDADSVFYTMK---ERDVVAWGSMIAGFCQNRRFKDALDLFRA 436

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D+  + S ++A   +++   G  +     K G  S VFV  +L+D+Y+K   
Sbjct: 437 MEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGF 496

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMPAL---GLDYDHFTLSA 192
              AE++F  +P KN V  N+++S Y     W G  E+ + L+P +   G   D  +++ 
Sbjct: 497 AESAEMVFSSMPNKNLVAWNSMISCYS----WNGLPEMSINLLPQILQHGFYLDSVSITT 552

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L A + ++A   G+ +HAY IR    + +D+ ++++LI+MY KCG +  A  +F     
Sbjct: 553 VLVAVSSVAALLKGKTLHAYQIR--LQIPSDLQVENALIDMYVKCGCLKYAQLIF----- 605

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
             E    +++V W SM+  YG +G  +E ++L++ M  + T PDEV F+ +I++CSH+G 
Sbjct: 606 --ENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGM 663

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM---LDRGHGSSSV 369
           V+ G+  F+ M  +Y +EP  EHY+ +VDLL RAG LD A+  I  M    DR       
Sbjct: 664 VEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADR------- 716

Query: 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
           S+W  LL AC      ELG+L A   L+++P     YV L NLY +  MWD    LR  M
Sbjct: 717 SVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASM 776

Query: 430 KEKGLKKDVGCSWIEV 445
           K +GLKK  GCSWIEV
Sbjct: 777 KGRGLKKSPGCSWIEV 792



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 176/363 (48%), Gaps = 25/363 (6%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78
            ++ L+  Y++C       +L    K  N  N + +NV+I  F  NG    +L+ +S   
Sbjct: 179 LETALIGMYSSCSRPMEAWSLFG--KLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAK 236

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
                L + +   + TA +  +   FG+QV   V K  +    +V ++L+ +YAK   + 
Sbjct: 237 NENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVE 296

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           DA+ +FD++  K     NA++S +         L L   M A     D FT+S+LL  C+
Sbjct: 297 DAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCS 356

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            + + +FGR VHA +I++  ++ ++V +QS+L+ MY KCG    A  VF     R     
Sbjct: 357 VVGSYDFGRTVHAEVIKR--SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKER----- 409

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
             DVV W SM+  + +N  FK+ + L+ AM   G K D     +VISA      V+LG  
Sbjct: 410 --DVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELG-- 465

Query: 319 YFEWMVHDYKLEPGPEH---YSC-LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
               ++H + ++ G E     +C LVD+  + G  + A  + + M ++     ++  W +
Sbjct: 466 ---HLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNK-----NLVAWNS 517

Query: 375 LLS 377
           ++S
Sbjct: 518 MIS 520



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 150/308 (48%), Gaps = 11/308 (3%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N +IS F  NG    AL  ++ M      +D++ + S L+  + V    FG+ V A V K
Sbjct: 314 NAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIK 373

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
               S+V + SAL+ +Y K     DA+ +F  +  ++ V   ++++G+C+ + +   L+L
Sbjct: 374 RSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDL 433

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M   G+  D   +++++ A  GL   E G  +H + I++   L +DVF+  SL++MY
Sbjct: 434 FRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKR--GLESDVFVACSLVDMY 491

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            K G    A  VF+          NK++V W SM+  Y  NG  +  I L   +L +G  
Sbjct: 492 SKFGFAESAEMVFS-------SMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFY 544

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
            D V+  TV+ A S    +  G     + +   ++    +  + L+D+  + G L  A +
Sbjct: 545 LDSVSITTVLVAVSSVAALLKGKTLHAYQIR-LQIPSDLQVENALIDMYVKCGCLKYA-Q 602

Query: 355 LINEMLDR 362
           LI E + R
Sbjct: 603 LIFENMPR 610



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/421 (21%), Positives = 172/421 (40%), Gaps = 74/421 (17%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N  I    + G    AL+  S      +    +   S L    S+ +   G+ + A +  
Sbjct: 24  NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVT 83

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA-----NALLSGYCEAKLWA 169
            G  S  ++ ++LI++Y K  L+  A  +FD++             N ++ GY       
Sbjct: 84  MGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGY------- 136

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRAC--AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                          Y HF    L + C    LS    GRQ+H Y+IR       D +++
Sbjct: 137 -------------FKYGHFE-EGLAQFCRMQELSWYMAGRQIHGYIIRNM--FEGDPYLE 180

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI MY  C   ++ ++ ++L G +LE   N  +V W  M+G +  NG +++ ++LY  
Sbjct: 181 TALIGMYSSC---SRPMEAWSLFG-KLENRSN--IVAWNVMIGGFVENGMWEKSLELYSL 234

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLEPGPEHYSC--LVDLLC 344
                 K    +F    +ACSH   +  G + + + +  +++ +P    Y C  L+ +  
Sbjct: 235 AKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDP----YVCTSLLTMYA 290

Query: 345 RAGELDKAWKLINEMLDR---------------GHGSSSVSMW---------------GA 374
           ++G ++ A K+ +++LD+               G    ++ ++                +
Sbjct: 291 KSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISS 350

Query: 375 LLSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           LLS C   G ++ G+    + ++     NV I   L  +Y K    ++   +   MKE+ 
Sbjct: 351 LLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERD 410

Query: 434 L 434
           +
Sbjct: 411 V 411


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/397 (35%), Positives = 222/397 (55%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++      G    AL     M   G   D++ L S L       D + G +V
Sbjct: 134 RDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSEV 193

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                ++G+ + VFVGS+LID+YA       +  +FD +PV++ +  N++L+G  +    
Sbjct: 194 HGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSV 253

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L + R M   G+     T S+L+  C  L++  FG+Q+HAY+IR      ++VF+ S
Sbjct: 254 EEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRG--GFEDNVFISS 311

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG ++ A  +F+    R+    + DVV WT+M+  Y  +G  +E + L+E M
Sbjct: 312 SLIDMYCKCGEISIAHHIFD----RM---CSPDVVSWTAMIMGYALHGPAREALVLFERM 364

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            +   KP+ + F+ V++ACSH G V  G +YF+ M   Y + P  EH + L D+L RAGE
Sbjct: 365 ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGE 424

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD+A+  I++M  +     + S+W  LL AC       L +  A+K +EL+P ++G +V+
Sbjct: 425 LDEAYNFISKMQIK----PTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVV 480

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+Y+    W+E   LR+ M++KG+KKD  CSWIEV
Sbjct: 481 LSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIEV 517



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 141/312 (45%), Gaps = 42/312 (13%)

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL------------- 134
           +L ++L +  ++  +  G  + A   +SG  +  F  +AL++LY KL             
Sbjct: 53  SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSV 112

Query: 135 ------LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
                   +     +FDE+  ++ V  N L+ G  E       L LVR M   G   D F
Sbjct: 113 GGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSF 172

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           TLS++L   A  +  + G +VH + +R      NDVF+ SSLI+MY  C     +++VF+
Sbjct: 173 TLSSVLPIFAECADVKRGSEVHGFAVRN--GFDNDVFVGSSLIDMYANCTRTDYSVKVFD 230

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               R       D +LW S+L    +NG  +E + ++  ML  G +P  V F ++I  C 
Sbjct: 231 NLPVR-------DPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCG 283

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           +   ++ G +     +H Y +  G E      S L+D+ C+ GE+  A  + + M     
Sbjct: 284 NLASLRFGKQ-----LHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMC---- 334

Query: 365 GSSSVSMWGALL 376
            S  V  W A++
Sbjct: 335 -SPDVVSWTAMI 345


>gi|225439791|ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 498

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 145/413 (35%), Positives = 231/413 (55%), Gaps = 19/413 (4%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           LG+     + +  ++ + +N ++S F R+G P  AL  F  M   G++L  + LCS L A
Sbjct: 91  LGSSVRVFEEVGFKDVVTWNTMLSSFVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKA 150

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVC 154
            T +K  + GKQV A V   G    V +G+ALID Y  +  I +A  +F  +   K+ V 
Sbjct: 151 CTLLKAFQQGKQVHALVVVMG-RDLVVLGTALIDFYTNVECIGEAMEIFHNLNWKKDDVM 209

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            N+L+SG    + +    E   +M A+  +     +++ L AC+  S    G+Q+H   +
Sbjct: 210 RNSLISGCVRNRRYK---EAFLIMSAMRPNV--VAVTSALAACSKNSDLWVGKQIHCVAM 264

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           R       D  + + L++MY KCG +  A  +F+    R++    KDVV WTSM+  YG 
Sbjct: 265 R--FGFTFDTQLCNVLLDMYAKCGKILNARSLFD----RMD---KKDVVSWTSMIDAYGN 315

Query: 275 NGYFKEVIKLYEAMLMNGTK--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           +G+  E +KL++ M   G    P+ V F+ V+SAC+H+G V+ G E F  +   Y L+PG
Sbjct: 316 HGHGLEALKLFKKMEGEGNSILPNLVTFLAVLSACAHSGMVEQGQECFNLIQKKYSLDPG 375

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
           PEHY+C +D+L RAG++++ W+L N M+ +     + ++W A+L+AC        G+ AA
Sbjct: 376 PEHYACFIDILGRAGQIEEVWRLFNNMI-KNQTKPTAAVWAAILNACSHNLDVSRGEFAA 434

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +  LEL+P+  G YV+LSN YA    WD + +LR +M++KGL K+ G SW+ V
Sbjct: 435 KNLLELEPNKPGNYVLLSNFYAAVGRWDSVNELRSIMRKKGLVKETGNSWVTV 487



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 177/388 (45%), Gaps = 56/388 (14%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+    N +I+   R+G+ + AL  F  +H  G  L++Y    +LT   +V D   GKQV
Sbjct: 7   RDLYTLNSLIASHVRSGNAVAALSVFRRIHRAGSHLNSY----TLTPVLAVLDPICGKQV 62

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K+G  +     +AL+D+Y+K   +  +  +F+E+  K+ V  N +LS +      
Sbjct: 63  HALAIKTGSDTPTVTKTALMDMYSKYGQLGSSVRVFEEVGFKDVVTWNTMLSSFVRHGRP 122

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND-VFMQ 227
              L + R M   G+    FTL +LL+AC  L A + G+QVHA ++     +G D V + 
Sbjct: 123 EEALAVFREMQKEGVWLSEFTLCSLLKACTLLKAFQQGKQVHALVVV----MGRDLVVLG 178

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+ Y     + +A+++F    H L  +  KD V+  S++    RN  +KE       
Sbjct: 179 TALIDFYTNVECIGEAMEIF----HNLNWK--KDDVMRNSLISGCVRNRRYKEAF----- 227

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           ++M+  +P+ VA  + ++ACS    + +G +    +   +      +  + L+D+  + G
Sbjct: 228 LIMSAMRPNVVAVTSALAACSKNSDLWVG-KQIHCVAMRFGFTFDTQLCNVLLDMYAKCG 286

Query: 348 ELDKAWKLINEMLDR---------------GHGSSSVSMWG-----------------AL 375
           ++  A  L + M  +               GHG  ++ ++                  A+
Sbjct: 287 KILNARSLFDRMDKKDVVSWTSMIDAYGNHGHGLEALKLFKKMEGEGNSILPNLVTFLAV 346

Query: 376 LSACHDCGKFELGKLA---AQKALELDP 400
           LSAC   G  E G+      QK   LDP
Sbjct: 347 LSACAHSGMVEQGQECFNLIQKKYSLDP 374



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 17/167 (10%)

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           FDE+P ++    N+L++ +  +      L + R +   G   + +TL+ +L     +   
Sbjct: 1   FDEMPHRDLYTLNSLIASHVRSGNAVAALSVFRRIHRAGSHLNSYTLTPVLAVLDPIC-- 58

Query: 204 EFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
             G+QVHA  I+     G+D     +++L++MY K G +  +++VF   G        KD
Sbjct: 59  --GKQVHALAIKT----GSDTPTVTKTALMDMYSKYGQLGSSVRVFEEVGF-------KD 105

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           VV W +ML  + R+G  +E + ++  M   G    E    +++ AC+
Sbjct: 106 VVTWNTMLSSFVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKACT 152


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 143/434 (32%), Positives = 236/434 (54%), Gaps = 43/434 (9%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKT 73
           I F + L+  Y+ C      G L   L+    +  RN + +  +I+ + R+G    A+K 
Sbjct: 286 INFSNTLLDMYSKC------GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
              M   G+ LD  A+ S L A         GK V  ++  +   S++FV +AL+D+YAK
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAK 399

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A  +F  + VK+ +  N ++                 L P      D  T++ +
Sbjct: 400 CGSMEAANSVFSTMVVKDIISWNTMIG---------------ELKP------DSRTMACV 438

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA LSA E G+++H Y++R      +D  + ++L+++Y KCG++  A  +F++    
Sbjct: 439 LPACASLSALERGKEIHGYILRN--GYSSDRHVANALVDLYVKCGVLGLARLLFDMIP-- 494

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                +KD+V WT M+  YG +GY  E I  +  M   G +PDEV+F++++ ACSH+G +
Sbjct: 495 -----SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  +F  M +D+ +EP  EHY+C+VDLL R G L KA++ I  +      +   ++WG
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETL----PIAPDATIWG 605

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL  C +    EL +  A++  EL+P N G YV+L+N+YA+   W+E+ +LRE + ++G
Sbjct: 606 ALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQG 665

Query: 434 LKKDVGCSWIEVTG 447
           L+K+ GCSWIE+ G
Sbjct: 666 LRKNPGCSWIEIKG 679



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 27/260 (10%)

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD++  ++ +  N+++SGY    L   GL + + M  LG+D D  T+ ++L  CA    
Sbjct: 207 LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGT 266

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G+ VH+  I+   +    +   ++L++MY KCG +  AL+VF   G R       +V
Sbjct: 267 LSLGKAVHSLAIKS--SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER-------NV 317

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V WTSM+  Y R+G     IKL + M   G K D VA  +++ AC+ +G +  G +    
Sbjct: 318 VSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD---- 373

Query: 323 MVHDY----KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR---------GHGSSSV 369
            VHDY     +E      + L+D+  + G ++ A  + + M+ +         G      
Sbjct: 374 -VHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDS 432

Query: 370 SMWGALLSACHDCGKFELGK 389
                +L AC      E GK
Sbjct: 433 RTMACVLPACASLSALERGK 452



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 49/372 (13%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS +  NG     L  +  M   GI +D   + S L    +      GK V
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +   KS +   +   + L+D+Y+K   +  A  +F+++  +N V   ++++GY      
Sbjct: 274 HSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRS 333

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G ++L++ M   G+  D   ++++L ACA   + + G+ VH Y+  K  N+ +++F+ +
Sbjct: 334 DGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI--KANNMESNLFVCN 391

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  A  VF+         + KD++ W +M+G                  
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTM-------VVKDIISWNTMIGEL---------------- 428

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYS-CLVDLLC 344
                KPD      V+ AC+    ++ G E     +H Y L  G     H +  LVDL  
Sbjct: 429 -----KPDSRTMACVLPACASLSALERGKE-----IHGYILRNGYSSDRHVANALVDLYV 478

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHN 402
           + G L  A +L+ +M+     S  +  W  +++    H  G   +      +   ++P  
Sbjct: 479 KCGVLGLA-RLLFDMIP----SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDE 533

Query: 403 VGIYVMLSNLYA 414
           V     +S LYA
Sbjct: 534 VSF---ISILYA 542



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 130/314 (41%), Gaps = 77/314 (24%)

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           NA +  +C+       +EL+ +     L+    T S++L+ CAGL +   G++VH+  I 
Sbjct: 70  NAKILHFCQLGDLENAMELICMCKKSELETK--TYSSVLQLCAGLKSFTDGKKVHS--II 125

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
           K  ++G D  +   L+  Y  CG + +  +VF+           K+V LW  M+  Y + 
Sbjct: 126 KSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTME-------KKNVYLWNFMVSEYAKI 178

Query: 276 GYFKEVIKLYEAML---MNGTKPD------------------------------------ 296
           G FKE I L++ M+   + G +P+                                    
Sbjct: 179 GDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGI 238

Query: 297 ---------EVAFVTVIS---ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLV 340
                    +V   T+IS    C+++G + LG       VH   ++   E      + L+
Sbjct: 239 YKQMMYLGIDVDLATIISVLVGCANSGTLSLG-----KAVHSLAIKSSFERRINFSNTLL 293

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           D+  + G+LD A ++  +M     G  +V  W ++++     G+ + G +   + +E + 
Sbjct: 294 DMYSKCGDLDGALRVFEKM-----GERNVVSWTSMIAGYTRDGRSD-GAIKLLQQMEKEG 347

Query: 401 HNVGIYVMLSNLYA 414
             + +  + S L+A
Sbjct: 348 VKLDVVAITSILHA 361


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/398 (35%), Positives = 221/398 (55%), Gaps = 18/398 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS +        AL+    M   G+  + +   S L A   + + R   Q+
Sbjct: 29  RNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFNLR---QL 85

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G  S VFV SALID+Y++   + +A  +FDE+   + V  +++++G+ +    
Sbjct: 86  HCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDG 145

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M   G      TL+++LRAC GL+  E GRQVH ++++       D+ + +
Sbjct: 146 DEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLK----YDQDLILNN 201

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  A  VF          + KDV+ W++M+    +NGY KE +KL+E+M
Sbjct: 202 ALLDMYCKCGSLEDANAVFVRM-------VEKDVISWSTMIAGLAQNGYSKEALKLFESM 254

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            + G KP+ V  V V+ ACSH G V+ G+ YF  M   + ++PG EHY C++DLL RAG 
Sbjct: 255 KVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGR 314

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A  LINEM            W ALL+AC      ++   AA++ L LDP + G YV+
Sbjct: 315 LSEAVDLINEM----ECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVL 370

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           LSN+YA    W+++ ++R  M  +G+KK+ GCSWIEV+
Sbjct: 371 LSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVS 408



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 149/286 (52%), Gaps = 22/286 (7%)

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
           F+ + LI++Y K  L+HDA+ +FD++P +N V    ++S Y  AKL    LE + LM   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G+  + FT S++LRAC GL      RQ+H  +I+    L +DVF++S+LI++Y + G + 
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIK--IGLDSDVFVRSALIDVYSRWGELE 115

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            AL+VF       +  +  D+V+W+S++  + +N    E ++L++ M   G    +    
Sbjct: 116 NALRVF-------DEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLT 168

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           +V+ AC+    ++LG +     VH  K +      + L+D+ C+ G L+ A  +   M++
Sbjct: 169 SVLRACTGLALLELGRQVH---VHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVE 225

Query: 362 RGHGSSSVSMWGALLSACHDCG--KFELGKLAAQKALELDPHNVGI 405
           +      V  W  +++     G  K  L    + K L + P+ V I
Sbjct: 226 K-----DVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTI 266


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 219/365 (60%), Gaps = 15/365 (4%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           F  TY L + + +  SV   R GK++ AH+ + G+ +++ V + L+D+YAK   +  A  
Sbjct: 180 FTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANS 239

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGL 200
           +F  +P KN V  +A+++ + + ++    LEL +LM   A     +  T+  +L+ACAGL
Sbjct: 240 VFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGL 299

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
           +A E G+ +H Y++R+   L + + + ++LI MYG+CG V    +VF+    R       
Sbjct: 300 AALEQGKLIHGYILRR--QLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKR------- 350

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           DVV W S++ +YG +G+ K+ I+++E M+  G  P  ++F+TV+ ACSH G V+ G   F
Sbjct: 351 DVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILF 410

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           E M+  Y++ PG EHY+C+VDLL RA  L +A KLI +M    H     ++WG+LL +C 
Sbjct: 411 ESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDM----HFEPGPTVWGSLLGSCR 466

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
                EL + A+    EL+P N G YV+L+++YA+  +W E   + +L++ +GL+K  GC
Sbjct: 467 IHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGC 526

Query: 441 SWIEV 445
           SWIEV
Sbjct: 527 SWIEV 531



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 134/300 (44%), Gaps = 32/300 (10%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           +G  V   +  SG+    F+ + LI++Y +L  I  A  +FDE   +     NAL     
Sbjct: 96  YGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALA 155

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC--AGLSAAEF--GRQVHAYMIRKCCN 219
                   L+L   M  +G   D FT + +L+AC  + LS      G+++HA+++R    
Sbjct: 156 MVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRH--G 213

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
              ++ + ++L+++Y K G V+ A  VF            K+ V W++M+  + +N    
Sbjct: 214 YEANIHVMTTLLDVYAKFGSVSYANSVFCAMP-------TKNFVSWSAMIACFAKNEMPM 266

Query: 280 EVIKLYEAMLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY- 336
           + ++L++ M+     + P+ V  V ++ AC+    ++ G      ++H Y L    +   
Sbjct: 267 KALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQG-----KLIHGYILRRQLDSIL 321

Query: 337 ---SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
              + L+ +  R GE+    ++ + M  R      V  W +L+S     G    GK A Q
Sbjct: 322 PVLNALITMYGRCGEVLMGQRVFDNMKKR-----DVVSWNSLISI---YGMHGFGKKAIQ 373



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T   L+ +CA  ++  +G  VH  ++        D F+ + LI MY + G + +AL+VF+
Sbjct: 80  TFEHLIYSCAQKNSLSYGLDVHRCLVDS--GFDQDPFLATKLINMYYELGSIDRALKVFD 137

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
               R        + +W ++       G+ KE++ LY  M   GT  D   +  V+ AC
Sbjct: 138 ETRER-------TIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKAC 189


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 244/450 (54%), Gaps = 31/450 (6%)

Query: 1   NVHAHQFETGLLLICL-----IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFN 55
            +HAH  + GL  I L     I   S+  LP  +      L       K    ++   ++
Sbjct: 46  QLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFS------LQVFDETPK----KSSTTWS 95

Query: 56  VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
            VIS F +N +PL AL+ F  M   G+  D +   S+  A   ++ +  GK V     K+
Sbjct: 96  SVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKT 155

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G+   VFVGS+L+D+YAK   I DA  +FDE+P +N V  + ++ GY +       L L 
Sbjct: 156 GYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLF 215

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           +      +D + FT S+++R C+  +  E G+ +H   ++   +  +  F+ S+LI +Y 
Sbjct: 216 KQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLK--MSFDSSSFVGSALISLYS 273

Query: 236 KCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
           KCG++  A QVF+        EI  +++ LW SML    ++ + + V  L+E M   G K
Sbjct: 274 KCGVIEGAYQVFD--------EIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMK 325

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           P+ + F++V+ ACSH G V+ G EYF  M  DY +EP  EHY+ LVDLL RAG+L +A  
Sbjct: 326 PNFIXFLSVLYACSHAGLVEKGREYFSLM-RDYGIEPETEHYASLVDLLGRAGKLQEAVS 384

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
           +I +M  R     + S+WGALL+ C      E+    A + LE+D  + G++V+LSN YA
Sbjct: 385 VIKQMPMR----PTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYA 440

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
               ++E  ++R++++++G+KK+ G SW+E
Sbjct: 441 AAGRYEEAARMRKMLRDRGVKKETGLSWVE 470



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 139/291 (47%), Gaps = 15/291 (5%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           +C+ L + T  +  R G Q+ AH+ K G  +   V   LI+LY+K  L   +  +FDE P
Sbjct: 28  ICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETP 87

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
            K+S   ++++S + + +     L+  R M   G+  D     +  +AC  L  ++ G+ 
Sbjct: 88  KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS 147

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           VH   ++       DVF+ SSL++MY KCG +  A  +F+    R       +VV W+ M
Sbjct: 148 VHCLAVK--TGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPER-------NVVSWSGM 198

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y +     E + L++  L+     ++  F +VI  CS +  ++LG +    +     
Sbjct: 199 IYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELG-KLIHGLCLKMS 257

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
            +      S L+ L  + G ++ A+++ +E+  R  G     +W ++L AC
Sbjct: 258 FDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLG-----LWNSMLIAC 303


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/403 (33%), Positives = 230/403 (57%), Gaps = 13/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+ L  R+ + +  +I+ + ++     AL TF  M   G++ D   L S+ +A   +K  
Sbjct: 404 LEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAM 463

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G Q+ A V  SG+ + + + + L++LYA+     +A  +F EI  K+ +  N L+SG+
Sbjct: 464 RQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGF 523

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +++L+   L +   M   G  Y+ FT  + + A A L+  + G+QVH   ++       
Sbjct: 524 GQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSET 583

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +V   ++LI +YGKCG +  A  +F+    R E       V W +++    ++G   E +
Sbjct: 584 EV--ANALISLYGKCGSIEDAKMIFSEMSLRNE-------VSWNTIITSCSQHGRGLEAL 634

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L++ M   G KP++V F+ V++ACSH G V+ G+ YF+ M + Y L P P+HY+C+VD+
Sbjct: 635 DLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDI 694

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG+LD+A + ++EM      +++  +W  LLSAC      E+G+LAA+  LEL+PH+
Sbjct: 695 LGRAGQLDRARRFVDEMPI----TANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHD 750

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              YV+LSN YA    W    Q+R++MK++G++K+ G SWIEV
Sbjct: 751 SASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEV 793



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 178/367 (48%), Gaps = 21/367 (5%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            K L+ R+ + +  ++S + + G    A + +S MH   +    Y L S L+A T  K  
Sbjct: 101 FKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLF 160

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             G+ + A V K  + S  FVG+ALI LY        AE +F ++   + V  N L+SG+
Sbjct: 161 AQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGH 220

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       L++   M   GL  D  T+++LL ACA +   + G+Q+H+Y+++    +  
Sbjct: 221 AQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLK--AGMSF 278

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D   + SL+++Y KCG +  A  +FNL G R       +VVLW  ML  YG+     +  
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNL-GDR------TNVVLWNLMLVAYGQISDLAKSF 331

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSC 338
           +++  M   G  P++  +  ++  C+ TGQ++LG +     +H   ++ G E        
Sbjct: 332 EIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQ-----IHSLSIKNGFESDMYVSGV 386

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           L+D+  +   LDKA K++ EML++    S  SM    +   HD  +  L      +   +
Sbjct: 387 LIDMYSKYRCLDKARKIL-EMLEKRDVVSWTSMIAGYVQ--HDFCEEALATFKEMQDCGV 443

Query: 399 DPHNVGI 405
            P N+G+
Sbjct: 444 WPDNIGL 450



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 174/392 (44%), Gaps = 28/392 (7%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           I +  L+  Y  C    ++ T  +     +  N + +N+++  + +      + + F  M
Sbjct: 281 ITEGSLLDLYVKC---GDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQM 337

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
              GI  + +     L   T       G+Q+ +   K+G+ S ++V   LID+Y+K   +
Sbjct: 338 QATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCL 397

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
             A  + + +  ++ V   ++++GY +       L   + M   G+  D+  L++   AC
Sbjct: 398 DKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASAC 457

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           AG+ A   G Q+HA +         D+ + ++L+ +Y +CG   +A  +F    H     
Sbjct: 458 AGIKAMRQGLQIHARVY--VSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDH----- 510

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
             KD + W  ++  +G++  +++ + ++  M   G K +   F++ ISA ++   +K G 
Sbjct: 511 --KDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGK 568

Query: 318 EYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           +     VH   ++ G     E  + L+ L  + G ++ A  + +EM  R   S     W 
Sbjct: 569 Q-----VHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-----WN 618

Query: 374 ALLSACHDCGK-FELGKLAAQKALE-LDPHNV 403
            ++++C   G+  E   L  Q   E L P++V
Sbjct: 619 TIITSCSQHGRGLEALDLFDQMKQEGLKPNDV 650



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 168/379 (44%), Gaps = 70/379 (18%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++ A     G  +   +G+ LIDLYAK  L+  A  +F E+  ++ V   A+LSGY +  
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L      L   M    +    + LS++L AC        GR +HA + ++     ++ F+
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQA--FCSETFV 181

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++LI +Y   G        F LA       +  D V + +++  + + G+ +  +++++
Sbjct: 182 GNALIALYLGFG-------SFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFD 234

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDL 342
            M ++G +PD V   ++++AC+  G ++ G +     +H Y L+ G          L+DL
Sbjct: 235 EMQLSGLRPDCVTVASLLAACASVGDLQKGKQ-----LHSYLLKAGMSFDYITEGSLLDL 289

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA------------------------ 378
             + G+++ A  + N + DR    ++V +W  +L A                        
Sbjct: 290 YVKCGDIETAHDIFN-LGDR----TNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHP 344

Query: 379 -----------CHDCGKFELGK----LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423
                      C   G+ ELG+    L+ +   E D +  G+ +   ++Y+K+   D+  
Sbjct: 345 NKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLI---DMYSKYRCLDKAR 401

Query: 424 QLRELMKEKGLKKDVGCSW 442
           ++ E+++    K+DV  SW
Sbjct: 402 KILEMLE----KRDV-VSW 415



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 10/120 (8%)

Query: 190 LSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           L+  L+AC G         ++HA  + +   LG D  + + LI++Y K GLV +A QVF 
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVR--GLGADRLIGNLLIDLYAKNGLVWQARQVFK 102

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               R       D V W +ML  Y + G  KE  +LY  M      P      +V+SAC+
Sbjct: 103 ELSSR-------DHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACT 155


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 143/434 (32%), Positives = 236/434 (54%), Gaps = 43/434 (9%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKT 73
           I F + L+  Y+ C      G L   L+    +  RN + +  +I+ + R+G    A+K 
Sbjct: 286 INFSNTLLDMYSKC------GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
              M   G+ LD  A+ S L A         GK V  ++  +   S++FV +AL+D+YAK
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAK 399

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A  +F  + VK+ +  N ++                 L P      D  T++ +
Sbjct: 400 CGSMEAANSVFSTMVVKDIISWNTMIG---------------ELKP------DSRTMACV 438

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA LSA E G+++H Y++R      +D  + ++L+++Y KCG++  A  +F++    
Sbjct: 439 LPACASLSALERGKEIHGYILRN--GYSSDRHVANALVDLYVKCGVLGLARLLFDMIP-- 494

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                +KD+V WT M+  YG +GY  E I  +  M   G +PDEV+F++++ ACSH+G +
Sbjct: 495 -----SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  +F  M +D+ +EP  EHY+C+VDLL R G L KA+    E ++    +   ++WG
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAY----EFMETLPIAPDATIWG 605

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL  C +    EL +  A++  EL+P N G YV+L+N+YA+   W+E+ +LRE + ++G
Sbjct: 606 ALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQG 665

Query: 434 LKKDVGCSWIEVTG 447
           L+K+ GCSWIE+ G
Sbjct: 666 LRKNPGCSWIEIKG 679



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 27/260 (10%)

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD++  ++ +  N+++SGY    L   GL + + M  LG+D D  T+ ++L  CA    
Sbjct: 207 LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGT 266

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G+ VH+  I+   +    +   ++L++MY KCG +  AL+VF   G R       +V
Sbjct: 267 LSLGKAVHSLAIKS--SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER-------NV 317

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V WTSM+  Y R+G     IKL + M   G K D VA  +++ AC+ +G +  G +    
Sbjct: 318 VSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD---- 373

Query: 323 MVHDY----KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR---------GHGSSSV 369
            VHDY     +E      + L+D+  + G ++ A  + + M+ +         G      
Sbjct: 374 -VHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDS 432

Query: 370 SMWGALLSACHDCGKFELGK 389
                +L AC      E GK
Sbjct: 433 RTMACVLPACASLSALERGK 452



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 49/372 (13%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS +  NG     L  +  M   GI +D   + S L    +      GK V
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +   KS +   +   + L+D+Y+K   +  A  +F+++  +N V   ++++GY      
Sbjct: 274 HSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRS 333

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G ++L++ M   G+  D   ++++L ACA   + + G+ VH Y+  K  N+ +++F+ +
Sbjct: 334 DGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI--KANNMESNLFVCN 391

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  A  VF+         + KD++ W +M+G                  
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTM-------VVKDIISWNTMIGEL---------------- 428

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYS-CLVDLLC 344
                KPD      V+ AC+    ++ G E     +H Y L  G     H +  LVDL  
Sbjct: 429 -----KPDSRTMACVLPACASLSALERGKE-----IHGYILRNGYSSDRHVANALVDLYV 478

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHN 402
           + G L  A +L+ +M+     S  +  W  +++    H  G   +      +   ++P  
Sbjct: 479 KCGVLGLA-RLLFDMIP----SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDE 533

Query: 403 VGIYVMLSNLYA 414
           V     +S LYA
Sbjct: 534 VSF---ISILYA 542



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 126/310 (40%), Gaps = 69/310 (22%)

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           NA +  +C+       +EL+ +     L+    T  ++L+ CAGL +   G++VH+  I 
Sbjct: 70  NAKILHFCQLGDLENAMELICMCQKSELETK--TYGSVLQLCAGLKSFTDGKKVHS--II 125

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
           K  ++G D  +   L+  Y  CG + +  +VF+           K+V LW  M+  Y + 
Sbjct: 126 KSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTME-------KKNVYLWNFMVSEYAKI 178

Query: 276 GYFKEVIKLYEAML---MNGTKPD------------------------------------ 296
           G FKE I L++ M+   + G +P+                                    
Sbjct: 179 GDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGI 238

Query: 297 ---------EVAFVTVIS---ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
                    +V   T+IS    C+++G + LG       +     E      + L+D+  
Sbjct: 239 YKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS-SFERRINFSNTLLDMYS 297

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           + G+LD A ++  +M     G  +V  W ++++     G+ + G +   + +E +   + 
Sbjct: 298 KCGDLDGALRVFEKM-----GERNVVSWTSMIAGYTRDGRSD-GAIKLLQQMEKEGVKLD 351

Query: 405 IYVMLSNLYA 414
           +  + S L+A
Sbjct: 352 VVAITSILHA 361


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/443 (32%), Positives = 238/443 (53%), Gaps = 15/443 (3%)

Query: 5   HQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRN 64
           H   T + L+  +   + L+  Y  C   +    +      ++ +    +N ++  + +N
Sbjct: 231 HGMATKMDLVSDVFVGNALIAMYGKCGLVEE--AVKRVFDLMDTKTVSSWNALLCGYAQN 288

Query: 65  GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG 124
             P  AL  +  M   G+  D + + S L A + +K   +G+++     ++G     F+G
Sbjct: 289 SDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIG 348

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
            +L+ LY        A+++FD +  ++ V  N +++GY +  L    + L R M + G+ 
Sbjct: 349 ISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQ 408

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
                +  +  AC+ LSA   G+++H + ++   +L  D+F+ SS+I+MY K G +  + 
Sbjct: 409 PYEIAIMCVCGACSQLSALRLGKELHCFALK--AHLTEDIFVSSSIIDMYAKGGCIGLSQ 466

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           ++F+    RL     KDV  W  ++  YG +G  KE ++L+E ML  G KPD+  F  ++
Sbjct: 467 RIFD----RLR---EKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGIL 519

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
            ACSH G V+ G+EYF  M++ + +EP  EHY+C+VD+L RAG +D A +LI EM     
Sbjct: 520 MACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEM----P 575

Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQ 424
           G     +W +LLS+C   G   LG+  A K LEL+P     YV++SNL+A    WD++ +
Sbjct: 576 GDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRR 635

Query: 425 LRELMKEKGLKKDVGCSWIEVTG 447
           +R  MK+ GL+KD GCSWIEV G
Sbjct: 636 VRGRMKDIGLQKDAGCSWIEVGG 658



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 179/391 (45%), Gaps = 26/391 (6%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFS-F 76
           +  +R++  Y+ C    +   + + L+    +N   +N ++S + RN     A+  FS  
Sbjct: 142 VLNTRIITMYSMCGSPSDSRMVFDKLR---RKNLFQWNAIVSAYTRNELFEDAMSIFSEL 198

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           + V     D + L   + A   + D   G+ +    TK   +S VFVG+ALI +Y K  L
Sbjct: 199 ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL 258

Query: 137 IHDA-ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
           + +A + +FD +  K     NALL GY +       L+L   M   GLD D FT+ +LL 
Sbjct: 259 VEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLL 318

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC+ + +  +G ++H + +R    L  D F+  SL+ +Y  CG    A  +F+   HR  
Sbjct: 319 ACSRMKSLHYGEEIHGFALRN--GLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHR-- 374

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
                 +V W  M+  Y +NG   E I L+  ML +G +P E+A + V  ACS    ++L
Sbjct: 375 -----SLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRL 429

Query: 316 GIEY--FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           G E   F    H   L       S ++D+  + G +  + ++ + + ++      V+ W 
Sbjct: 430 GKELHCFALKAH---LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREK-----DVASWN 481

Query: 374 ALLS--ACHDCGKFELGKLAAQKALELDPHN 402
            +++    H  GK  L        L L P +
Sbjct: 482 VIIAGYGIHGRGKEALELFEKMLRLGLKPDD 512



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
            +  LL+AC      E GR++H  M+       ND  + + +I MY  CG  + +  VF+
Sbjct: 107 AMGVLLQACGQRKDIEVGRRLHE-MVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFD 165

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISAC 307
               +L     K++  W +++  Y RN  F++ + ++  ++ +   KPD      VI AC
Sbjct: 166 ----KLR---RKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC 218

Query: 308 SHTGQVKLGI-EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
           +  G + LG+ +    M     L       + L+ +  + G +++A K + +++D    +
Sbjct: 219 A--GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMD----T 272

Query: 367 SSVSMWGALL 376
            +VS W ALL
Sbjct: 273 KTVSSWNALL 282


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/394 (32%), Positives = 229/394 (58%), Gaps = 13/394 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +++ F + G    AL+ F  MH  G+  +T  +  +L A   V++ + GK++  +
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V ++    S  VGSALI +Y+    +  A  +F E+  ++ V  N+++S   ++      
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L+L+R M    ++ +  T+ + L AC+ L+A   G+++H ++IR  C L    F+ +SLI
Sbjct: 585 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR--CGLDTCNFILNSLI 642

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MYG+CG + K+ ++F+L   R       D+V W  M+ VYG +G+  + + L++     
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQR-------DLVSWNVMISVYGMHGFGMDAVNLFQXFRTM 695

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G KP+ + F  ++SACSH+G ++ G +YF+ M  +Y ++P  E Y+C+VDLL RAG+ ++
Sbjct: 696 GLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 755

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
             + I +M        + ++WG+LL AC      +L + AA+   EL+P + G YV+++N
Sbjct: 756 TLEFIEKM----PFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMAN 811

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +Y+    W++  ++R LMKE+G+ K  GCSWIEV
Sbjct: 812 IYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 845



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 147/307 (47%), Gaps = 14/307 (4%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           ++ YA  S L     + + R G QV A +  +G     F+GS L+++Y +   + DA  M
Sbjct: 89  IEIYA--SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRM 146

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           FD++  +N     A++  YC    +   ++L  LM   G+  DHF    + +AC+ L   
Sbjct: 147 FDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNY 206

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDV 262
             G+ V+ YM+        +  ++ S+++M+ KCG +  A + F         EI  KDV
Sbjct: 207 RVGKDVYDYML--SIGFEGNSCVKGSILDMFIKCGRMDIARRFFE--------EIEFKDV 256

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
            +W  M+  Y   G FK+ +K    M ++G KPD+V +  +IS  + +GQ +   +YF  
Sbjct: 257 FMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLE 316

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M      +P    ++ L+    + G   +A  +  +M+  G   +S+++  A +SAC + 
Sbjct: 317 MGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASA-VSACTNL 375

Query: 383 GKFELGK 389
                G+
Sbjct: 376 SLLRHGR 382



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 177/410 (43%), Gaps = 62/410 (15%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           LK   P N + +  +I+   +NG    AL  F  M + G+  ++  + S+++A T++   
Sbjct: 320 LKDFKP-NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLL 378

Query: 103 RFGKQVQAHVTKSGWLSS-VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           R G+++  +  K   L S + VG++L+D YAK   +  A   F  I   + V  NA+L+G
Sbjct: 379 RHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAG 438

Query: 162 YC-------------EAKL---------WAG-------------GLELVRLMPALGLDYD 186
           Y              E K          W G              LE  + M ++G+D +
Sbjct: 439 YALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPN 498

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
             T+S  L AC  +   + G+++H Y++R    L   V   S+LI MY  C  +  A  V
Sbjct: 499 TTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGV--GSALISMYSGCDSLEVACSV 556

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           F+    R       DVV+W S++    ++G     + L   M ++  + + V  V+ + A
Sbjct: 557 FSELSTR-------DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 609

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDR 362
           CS    ++ G E     +H + +  G +      + L+D+  R G + K+ ++ + M  R
Sbjct: 610 CSKLAALRQGKE-----IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR 664

Query: 363 GHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
                 +  W  ++S    H  G   +      + + L P+++    +LS
Sbjct: 665 -----DLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLS 709



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 164/416 (39%), Gaps = 85/416 (20%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN   +  ++  +C  G     +K F  M   G+  D +       A + +K+ R G
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 209

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN-------------- 151
           K V  ++   G+  +  V  +++D++ K   +  A   F+EI  K+              
Sbjct: 210 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 269

Query: 152 ---------------------SVCANALLSGYCEAK---------LWAGGLE-------- 173
                                 V  NA++SGY ++          L  GGL+        
Sbjct: 270 GEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVS 329

Query: 174 -------------------LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
                              + R M   G+  +  T+++ + AC  LS    GR++H Y I
Sbjct: 330 WTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCI 389

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
            K   L +D+ + +SL++ Y KC  V  A + F +           D+V W +ML  Y  
Sbjct: 390 -KVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQ-------TDLVSWNAMLAGYAL 441

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
            G  +E I+L   M   G +PD + +  +++  +  G  K  +E+F+ M H   ++P   
Sbjct: 442 RGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDP--- 497

Query: 335 HYSCLVDLLCRAGELD--KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           + + +   L   G++   K  K I+  + R H   S  +  AL+S    C   E+ 
Sbjct: 498 NTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVA 553



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 140/320 (43%), Gaps = 48/320 (15%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+ + +N +IS   ++G  + AL     M++  + ++T  + S+L A + +   R G
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG 619

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   + + G  +  F+ ++LID+Y +   I  +  +FD +P ++ V  N ++S Y   
Sbjct: 620 KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMH 679

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L +    +GL  +H T + LL AC+           H+              
Sbjct: 680 GFGMDAVNLFQXFRTMGLKPNHITFTNLLSACS-----------HS-------------- 714

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
                       GL+ +  + F +   + E  ++  V  +  M+ +  R G F E ++  
Sbjct: 715 ------------GLIEEGWKYFKMM--KTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 760

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPE-HYSCLVDLL 343
           E M     +P+   + +++ AC    ++    +  E+   + ++LEP    +Y  + ++ 
Sbjct: 761 EKMPF---EPNAAVWGSLLGAC----RIHCNPDLAEYAARYLFELEPQSSGNYVLMANIY 813

Query: 344 CRAGELDKAWKLINEMLDRG 363
             AG  + A K+   M +RG
Sbjct: 814 SAAGRWEDAAKIRCLMKERG 833


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/400 (34%), Positives = 220/400 (55%), Gaps = 15/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +  +++   +NG    AL  F  M   G+ +D Y   S LTA  ++     G
Sbjct: 237 IEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEG 296

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ A++T++ +  +VFVGSAL+D+Y+K   +  AE +F  +  KN +   A++ GY + 
Sbjct: 297 KQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQN 356

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + +   M   G+  D FTL +++ +CA L++ E G Q H   +     L   V 
Sbjct: 357 GCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLAL--VSGLRPYVT 414

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKL 284
           + ++L+ +YGKCG +  A        HRL  E++  D V WT+++  Y + G  KE I L
Sbjct: 415 VSNALVTLYGKCGSIEDA--------HRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDL 466

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +E ML  G KPD V F+ V+SACS +G V  G  YF  M  D+ + P  +HY+C++DL  
Sbjct: 467 FEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYS 526

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           R+G L +A + I +M            W  LLSAC   G  E+GK AA+  L+LDP N  
Sbjct: 527 RSGWLKQAEEFIKQM----PRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPA 582

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            YV+L +++A    W+++ +LR  M+++ +KK+ GCSWI+
Sbjct: 583 SYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIK 622



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 154/310 (49%), Gaps = 41/310 (13%)

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G+      +   +  ++++ D   G+QV   + + G+ +  F GS L+D+YAK+  I DA
Sbjct: 140 GVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDA 199

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWA------------------------------- 169
             +FDE+  KN V  N +++G    K+ A                               
Sbjct: 200 RRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLES 259

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             L++ R M A G+  D +T  ++L AC  L+A E G+Q+HAY+ R C    ++VF+ S+
Sbjct: 260 EALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYE--DNVFVGSA 317

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L++MY KC  V  A  VF          + K+++ WT+M+  YG+NG  +E ++++  M 
Sbjct: 318 LVDMYSKCRSVRLAEAVFRRM-------MWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQ 370

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
            +G KPD+    +VIS+C++   ++ G + F  +     L P     + LV L  + G +
Sbjct: 371 RDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSI 429

Query: 350 DKAWKLINEM 359
           + A +L +EM
Sbjct: 430 EDAHRLFDEM 439



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 129/319 (40%), Gaps = 61/319 (19%)

Query: 66  SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGS 125
           SP Y L T          L  YA    L  +  V DA  G+             ++  G+
Sbjct: 44  SPTYLLNTL---------LTAYASSGLLPHARRVFDAMPGR-------------NLVTGN 81

Query: 126 ALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE--LVRLMPALGL 183
           +L+   A+  L+ D E +F  +P +++V  NALL+G+  A   A      +  L    G+
Sbjct: 82  SLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGV 141

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
                T+S ++   + L     GRQVH  ++R     G   F  S L++MY K G +  A
Sbjct: 142 RPSRITMSGVVMVASALGDRALGRQVHCQILR--LGFGAYAFTGSPLVDMYAKVGPIGDA 199

Query: 244 LQVFN----------------------LAGHR--LEGEINKDVVLWTSMLGVYGRNGYFK 279
            +VF+                      +A  R   E    +D + WT+M+    +NG   
Sbjct: 200 RRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLES 259

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--- 336
           E + ++  M   G   D+  F ++++AC     ++ G +     +H Y      E     
Sbjct: 260 EALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQ-----IHAYITRTCYEDNVFV 314

Query: 337 -SCLVDLL--CRAGELDKA 352
            S LVD+   CR+  L +A
Sbjct: 315 GSALVDMYSKCRSVRLAEA 333


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 141/409 (34%), Positives = 219/409 (53%), Gaps = 14/409 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           LG      + +  RN + +N V+++   +G PL   K +  +   G   +  ++C+   A
Sbjct: 165 LGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNA 224

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
                    G+Q    V   G+   V V +A++D Y K      A  +FD + V+NSV  
Sbjct: 225 CAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSW 284

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
            +++  Y +       L +       G +   F +S++L  CAGL    FGR +HA  +R
Sbjct: 285 CSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVR 344

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
            C +   ++F+ S+L++MYGKCG V  A QVF     R       ++V W +M+G Y   
Sbjct: 345 SCIDA--NIFVASALVDMYGKCGGVEDAEQVFLDMPER-------NLVTWNAMIGGYAHI 395

Query: 276 GYFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           G  +  + +++AM+ +G T P+ +  V VI+ACS  G  K G E F+ M   + +EP  E
Sbjct: 396 GDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTE 455

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
           HY+C+VDLL RAG  ++A+++I  M  R     S+S+WGALL AC   GK ELG++A++K
Sbjct: 456 HYACVVDLLGRAGMEERAYEIIQRMPMR----PSISVWGALLGACKMHGKTELGRIASEK 511

Query: 395 ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
             ELDP + G +V+LSN+ A    W E   +R+ MK  G+KK+ GCSWI
Sbjct: 512 LFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKEPGCSWI 560



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 153/336 (45%), Gaps = 28/336 (8%)

Query: 50  NP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKD--ARFG 105
           NP  + F   IS   ++  PL AL  F+ M   G+  + +   S+  A+       +  G
Sbjct: 73  NPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVG 132

Query: 106 KQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            Q+ A   + G+L    FV  A +D+Y K   +  A  +F+E+P +N +  NA+++    
Sbjct: 133 PQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMT---N 189

Query: 165 AKLWAGGLELVR----LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           A +    LE  +    L  A G+  +  ++ A   ACAG      G Q H +++   C  
Sbjct: 190 AVIDGRPLETFKAYFGLREAGGMP-NVVSVCAFFNACAGAMFLSLGEQFHGFVV--TCGF 246

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             DV + +++++ YGKC    KA  VF+  G R+     ++ V W SM+  Y ++G  ++
Sbjct: 247 DMDVSVSNAMVDFYGKCRCAGKARAVFD--GMRV-----RNSVSWCSMIVAYAQHGAEED 299

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            + +Y      G +P +    +V++ C+    +  G       V    ++      S LV
Sbjct: 300 ALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSC-IDANIFVASALV 358

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           D+  + G ++ A ++  +M +R     ++  W A++
Sbjct: 359 DMYGKCGGVEDAEQVFLDMPER-----NLVTWNAMI 389


>gi|297741507|emb|CBI32639.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 145/413 (35%), Positives = 231/413 (55%), Gaps = 19/413 (4%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           LG+     + +  ++ + +N ++S F R+G P  AL  F  M   G++L  + LCS L A
Sbjct: 52  LGSSVRVFEEVGFKDVVTWNTMLSSFVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKA 111

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVC 154
            T +K  + GKQV A V   G    V +G+ALID Y  +  I +A  +F  +   K+ V 
Sbjct: 112 CTLLKAFQQGKQVHALVVVMG-RDLVVLGTALIDFYTNVECIGEAMEIFHNLNWKKDDVM 170

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            N+L+SG    + +    E   +M A+  +     +++ L AC+  S    G+Q+H   +
Sbjct: 171 RNSLISGCVRNRRYK---EAFLIMSAMRPNV--VAVTSALAACSKNSDLWVGKQIHCVAM 225

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           R       D  + + L++MY KCG +  A  +F+    R++    KDVV WTSM+  YG 
Sbjct: 226 R--FGFTFDTQLCNVLLDMYAKCGKILNARSLFD----RMD---KKDVVSWTSMIDAYGN 276

Query: 275 NGYFKEVIKLYEAMLMNGTK--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           +G+  E +KL++ M   G    P+ V F+ V+SAC+H+G V+ G E F  +   Y L+PG
Sbjct: 277 HGHGLEALKLFKKMEGEGNSILPNLVTFLAVLSACAHSGMVEQGQECFNLIQKKYSLDPG 336

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
           PEHY+C +D+L RAG++++ W+L N M+ +     + ++W A+L+AC        G+ AA
Sbjct: 337 PEHYACFIDILGRAGQIEEVWRLFNNMI-KNQTKPTAAVWAAILNACSHNLDVSRGEFAA 395

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +  LEL+P+  G YV+LSN YA    WD + +LR +M++KGL K+ G SW+ V
Sbjct: 396 KNLLELEPNKPGNYVLLSNFYAAVGRWDSVNELRSIMRKKGLVKETGNSWVTV 448



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 157/352 (44%), Gaps = 57/352 (16%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D Y L +SL AS      R G  V A   K+G  +     +AL+D+Y+K   +  +  +F
Sbjct: 5   DLYTL-NSLIAS----HVRSGNAVHALAIKTGSDTPTVTKTALMDMYSKYGQLGSSVRVF 59

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           +E+  K+ V  N +LS +         L + R M   G+    FTL +LL+AC  L A +
Sbjct: 60  EEVGFKDVVTWNTMLSSFVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKAFQ 119

Query: 205 FGRQVHAYMIRKCCNLGND-VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
            G+QVHA ++     +G D V + ++LI+ Y     + +A+++F    H L  +  KD V
Sbjct: 120 QGKQVHALVVV----MGRDLVVLGTALIDFYTNVECIGEAMEIF----HNLNWK--KDDV 169

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
           +  S++    RN  +KE       ++M+  +P+ VA  + ++ACS    + +G +    +
Sbjct: 170 MRNSLISGCVRNRRYKEAF-----LIMSAMRPNVVAVTSALAACSKNSDLWVG-KQIHCV 223

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR---------------GHGSSS 368
              +      +  + L+D+  + G++  A  L + M  +               GHG  +
Sbjct: 224 AMRFGFTFDTQLCNVLLDMYAKCGKILNARSLFDRMDKKDVVSWTSMIDAYGNHGHGLEA 283

Query: 369 VSMWG-----------------ALLSACHDCGKFELGKLA---AQKALELDP 400
           + ++                  A+LSAC   G  E G+      QK   LDP
Sbjct: 284 LKLFKKMEGEGNSILPNLVTFLAVLSACAHSGMVEQGQECFNLIQKKYSLDP 335


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 224/402 (55%), Gaps = 17/402 (4%)

Query: 49  RNP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           R P  + +N +IS F  NG    A+K F  + V G  + +  +   +  S+         
Sbjct: 266 RKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLAC 325

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +Q    KSG +    V +AL  +Y++L  I  A  +FDE   K     NA++SGY ++ 
Sbjct: 326 CIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSG 385

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L    + L + M       +  T++++L ACA L A  FG+ VH  +  K  NL  ++++
Sbjct: 386 LTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSK--NLEQNIYV 443

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++LI+MY KCG +++A Q+F+L          K+ V W +M+  YG +GY  E +KL+ 
Sbjct: 444 STALIDMYAKCGNISEASQLFDLTSE-------KNTVTWNTMIFGYGLHGYGDEALKLFN 496

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML  G +P  V F++V+ ACSH G V+ G E F  MV+ Y++EP  EHY+C+VD+L RA
Sbjct: 497 EMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRA 556

Query: 347 GELDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           G+L+KA + I +M ++ G      ++WG LL AC       L ++A+++  ELDP NVG 
Sbjct: 557 GQLEKALEFIRKMPVEPGP-----AVWGTLLGACMIHKDTNLARVASERLFELDPGNVGY 611

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           YV+LSN+Y+    + +   +RE +K++ L K  GC+ IEV G
Sbjct: 612 YVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNG 653



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 167/364 (45%), Gaps = 31/364 (8%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D +    +++AS    D   G  + AH    G+ S++FV SAL+DLY K   +  A  +F
Sbjct: 105 DNFTYAFAISAS---PDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVF 161

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D++P +++V  N +++G      +   +++ + M A G+  D  T++ +L A A +   +
Sbjct: 162 DKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVK 221

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVV 263
            G  +    ++       D ++ + LI ++ KC  V  A  +F        G I K D+V
Sbjct: 222 VGMGIQCLALK--LGFHFDDYVLTGLISVFSKCEDVDTARLLF--------GMIRKPDLV 271

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            + +++  +  NG  +  +K +  +L++G +      V +I   S  G + L        
Sbjct: 272 SYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLA-----CC 326

Query: 324 VHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           +  + ++ G    P   + L  +  R  E+D A +L +E  ++     +V+ W A++S  
Sbjct: 327 IQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEK-----TVAAWNAMISGY 381

Query: 380 HDCGKFELGKLAAQKAL--ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
              G  E+     Q+ +  E  P+ V I  +LS   A+         + +L+K K L+++
Sbjct: 382 AQSGLTEMAISLFQEMMTTEFTPNPVTITSILSAC-AQLGALSFGKSVHQLIKSKNLEQN 440

Query: 438 VGCS 441
           +  S
Sbjct: 441 IYVS 444



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 168/416 (40%), Gaps = 55/416 (13%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I+   RN     +++ F  M   G+ LD+  + + L A   +++ + G  +
Sbjct: 167 RDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGI 226

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           Q    K G+    +V + LI +++K   +  A L+F  I   + V  NAL+SG+      
Sbjct: 227 QCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGET 286

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              ++  R +   G      T+  L+   +          +  + ++    L   V   +
Sbjct: 287 ECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSV--ST 344

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L  +Y +   +  A Q+F+ +         K V  W +M+  Y ++G  +  I L++ M
Sbjct: 345 ALTTIYSRLNEIDLARQLFDESSE-------KTVAAWNAMISGYAQSGLTEMAISLFQEM 397

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           +     P+ V   +++SAC+  G +  G +    ++    LE      + L+D+  + G 
Sbjct: 398 MTTEFTPNPVTITSILSACAQLGALSFG-KSVHQLIKSKNLEQNIYVSTALIDMYAKCGN 456

Query: 349 L-------------------------------DKAWKLINEMLDRGHGSSSVSMWGALLS 377
           +                               D+A KL NEML  G   SSV+   ++L 
Sbjct: 457 ISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFL-SVLY 515

Query: 378 ACHDCGKFELGKL---AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430
           AC   G    G     A      ++P        L+  YA  CM D +G+  +L K
Sbjct: 516 ACSHAGLVREGDEIFHAMVNKYRIEP--------LAEHYA--CMVDILGRAGQLEK 561


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/391 (35%), Positives = 217/391 (55%), Gaps = 13/391 (3%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS +  NG  + AL  F ++   G+  +   + S L A  ++   + GK++   + K G
Sbjct: 451 MISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKG 510

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
             +   VGS++  +YAK   +  A   F  +PVK+SVC N ++  + +       ++L R
Sbjct: 511 LENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFR 570

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M   G  +D  +LSA L ACA   A  +G+++H +++R   +  +D F+ S+LI+MY K
Sbjct: 571 QMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRN--SFISDTFVASTLIDMYSK 628

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG +  A  VF++   + E       V W S++  YG +G  +E + L+  M+  G +PD
Sbjct: 629 CGKLALARSVFDMMDWKNE-------VSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPD 681

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
            V F+ ++SAC H G V  GI YF  M  +Y +    EH++C+VDL  RAG L +A+  I
Sbjct: 682 HVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTI 741

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
             M      +     WG+LL AC   G  EL KLA++  +ELDP+N G YV+LSN++A  
Sbjct: 742 KSM----PFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGA 797

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             W+ + ++R LMKEKG++K  G SWI+V G
Sbjct: 798 GEWESVLKVRSLMKEKGVQKIPGYSWIDVNG 828



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 157/342 (45%), Gaps = 21/342 (6%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           SR++  Y  CR  K++G L   L+       LP+N +I  F   G   +AL  F  M   
Sbjct: 115 SRMLGMYVLCRSFKDVGNLFCRLQLCYS---LPWNWLIRGFSMLGCFDFALMFFFRMLGS 171

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
            +  D Y     + A   + +    K V       G+   +F+GS+LI LY     IHDA
Sbjct: 172 NVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDA 231

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
           + +FDE+PV++ +  N +L+GY +   +   L   + M    +  +  +   LL  CA  
Sbjct: 232 KYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATR 291

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                G Q+H  +IR      +D  + +++I MY KCG +  A ++F++           
Sbjct: 292 GIVRAGIQLHGLVIRS--GFESDPTVANTIITMYSKCGNLFDARKIFDIMPQ-------T 342

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           D V W  ++  Y +NG+  E + L++AM+ +G K D + F + + +   +G +K   E  
Sbjct: 343 DTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKE-- 400

Query: 321 EWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINE 358
              VH Y +  G        S LVD+  + G+++ A K   +
Sbjct: 401 ---VHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQ 439



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 155/315 (49%), Gaps = 18/315 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +NV+++ + +NG    AL TF  M    +  ++ +    L+   +    R G Q+
Sbjct: 241 RDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQL 300

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V +SG+ S   V + +I +Y+K   + DA  +FD +P  ++V  N L++GY +    
Sbjct: 301 HGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFT 360

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + L + M   G+  D  T ++ L +     + ++ ++VH+Y++R    +  DV+++S
Sbjct: 361 DEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRH--GVPFDVYLKS 418

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+++Y K G V  A + F       +     DV + T+M+  Y  NG   E + L+  +
Sbjct: 419 ALVDIYFKGGDVEMACKTF-------QQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWL 471

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
           +  G  P+ +   +V+ AC+    +KLG E     +H   L+ G E+     S +  +  
Sbjct: 472 IQEGMVPNCLTMASVLPACAALASLKLGKE-----LHCDILKKGLENVCQVGSSITYMYA 526

Query: 345 RAGELDKAWKLINEM 359
           ++G LD A++    M
Sbjct: 527 KSGRLDLAYQFFRRM 541



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 139/316 (43%), Gaps = 46/316 (14%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N++I  F +NG P  A+  F  M   G   D+ +L ++L+A  +     +GK++
Sbjct: 544 KDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKEL 603

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V ++ ++S  FV S LID+Y+K   +  A  +FD +  KN V  N++++ Y      
Sbjct: 604 HCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRP 663

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M   G+  DH T   ++ AC            HA ++ +       ++   
Sbjct: 664 RECLDLFHEMVEAGIQPDHVTFLVIMSACG-----------HAGLVDE------GIYYFR 706

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            + E YG C               R+E         +  M+ +YGR G   E     ++M
Sbjct: 707 CMTEEYGICA--------------RMEH--------FACMVDLYGRAGRLHEAFDTIKSM 744

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSCLVDLLCRAG 347
                 PD   + +++ AC   G V+L     + +V   +L+P    +Y  L ++   AG
Sbjct: 745 PFT---PDAGTWGSLLGACRLHGNVELAKLASKHLV---ELDPNNSGYYVLLSNVHAGAG 798

Query: 348 ELDKAWKLINEMLDRG 363
           E +   K+ + M ++G
Sbjct: 799 EWESVLKVRSLMKEKG 814


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/394 (32%), Positives = 229/394 (58%), Gaps = 13/394 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +++ F + G    AL+ F  MH  G+  +T  +  +L A   V++ + GK++  +
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGY 524

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V ++    S  VGSALI +Y+    +  A  +F E+  ++ V  N+++S   ++      
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L+L+R M    ++ +  T+ + L AC+ L+A   G+++H ++IR  C L    F+ +SLI
Sbjct: 585 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR--CGLDTCNFILNSLI 642

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MYG+CG + K+ ++F+L   R       D+V W  M+ VYG +G+  + + L++     
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQR-------DLVSWNVMISVYGMHGFGMDAVNLFQQFRTM 695

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G KP+ + F  ++SACSH+G ++ G +YF+ M  +Y ++P  E Y+C+VDLL RAG+ ++
Sbjct: 696 GLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 755

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
             + I +M        + ++WG+LL AC      +L + AA+   EL+P + G YV+++N
Sbjct: 756 TLEFIEKM----PFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMAN 811

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +Y+    W++  ++R LMKE+G+ K  GCSWIEV
Sbjct: 812 IYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 845



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 147/307 (47%), Gaps = 14/307 (4%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           ++ YA  S L     + + R G QV A +  +G     F+GS L+++Y +   + DA  M
Sbjct: 89  IEIYA--SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRM 146

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           FD++  +N     A++  YC    +   ++L  LM   G+  DHF    + +AC+ L   
Sbjct: 147 FDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNY 206

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDV 262
             G+ V+ YM+        +  ++ S+++M+ KCG +  A + F         EI  KDV
Sbjct: 207 RVGKDVYDYMLS--IGFEGNSCVKGSILDMFIKCGRMDIARRFFE--------EIEFKDV 256

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
            +W  M+  Y   G FK+ +K    M ++G KPD+V +  +IS  + +GQ +   +YF  
Sbjct: 257 FMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLE 316

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M      +P    ++ L+    + G   +A  +  +M+  G   +S+++  A +SAC + 
Sbjct: 317 MGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASA-VSACTNL 375

Query: 383 GKFELGK 389
                G+
Sbjct: 376 SLLRHGR 382



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 177/410 (43%), Gaps = 62/410 (15%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           LK   P N + +  +I+   +NG    AL  F  M + G+  ++  + S+++A T++   
Sbjct: 320 LKDFKP-NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLL 378

Query: 103 RFGKQVQAHVTKSGWLSS-VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           R G+++  +  K   L S + VG++L+D YAK   +  A   F  I   + V  NA+L+G
Sbjct: 379 RHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAG 438

Query: 162 YC-------------EAKL---------WAG-------------GLELVRLMPALGLDYD 186
           Y              E K          W G              LE  + M ++G+D +
Sbjct: 439 YALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPN 498

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
             T+S  L AC  +   + G+++H Y++R    L   V   S+LI MY  C  +  A  V
Sbjct: 499 TTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGV--GSALISMYSGCDSLEVACSV 556

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           F+    R       DVV+W S++    ++G     + L   M ++  + + V  V+ + A
Sbjct: 557 FSELSTR-------DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 609

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDR 362
           CS    ++ G E     +H + +  G +      + L+D+  R G + K+ ++ + M  R
Sbjct: 610 CSKLAALRQGKE-----IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR 664

Query: 363 GHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
                 +  W  ++S    H  G   +      + + L P+++    +LS
Sbjct: 665 -----DLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLS 709



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 164/416 (39%), Gaps = 85/416 (20%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN   +  ++  +C  G     +K F  M   G+  D +       A + +K+ R G
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 209

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN-------------- 151
           K V  ++   G+  +  V  +++D++ K   +  A   F+EI  K+              
Sbjct: 210 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 269

Query: 152 ---------------------SVCANALLSGYCEAK---------LWAGGLE-------- 173
                                 V  NA++SGY ++          L  GGL+        
Sbjct: 270 GEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVS 329

Query: 174 -------------------LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
                              + R M   G+  +  T+++ + AC  LS    GR++H Y I
Sbjct: 330 WTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCI 389

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
            K   L +D+ + +SL++ Y KC  V  A + F +           D+V W +ML  Y  
Sbjct: 390 -KVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQ-------TDLVSWNAMLAGYAL 441

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
            G  +E I+L   M   G +PD + +  +++  +  G  K  +E+F+ M H   ++P   
Sbjct: 442 RGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDP--- 497

Query: 335 HYSCLVDLLCRAGELD--KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           + + +   L   G++   K  K I+  + R H   S  +  AL+S    C   E+ 
Sbjct: 498 NTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVA 553



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 140/320 (43%), Gaps = 48/320 (15%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+ + +N +IS   ++G  + AL     M++  + ++T  + S+L A + +   R G
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG 619

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   + + G  +  F+ ++LID+Y +   I  +  +FD +P ++ V  N ++S Y   
Sbjct: 620 KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMH 679

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L +    +GL  +H T + LL AC+           H+              
Sbjct: 680 GFGMDAVNLFQQFRTMGLKPNHITFTNLLSACS-----------HS-------------- 714

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
                       GL+ +  + F +   + E  ++  V  +  M+ +  R G F E ++  
Sbjct: 715 ------------GLIEEGWKYFKMM--KTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 760

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPE-HYSCLVDLL 343
           E M     +P+   + +++ AC    ++    +  E+   + ++LEP    +Y  + ++ 
Sbjct: 761 EKMPF---EPNAAVWGSLLGAC----RIHCNPDLAEYAARYLFELEPQSSGNYVLMANIY 813

Query: 344 CRAGELDKAWKLINEMLDRG 363
             AG  + A K+   M +RG
Sbjct: 814 SAAGRWEDAAKIRCLMKERG 833


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/418 (32%), Positives = 229/418 (54%), Gaps = 15/418 (3%)

Query: 29  TCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYA 88
           TC     + ++    + +  ++ + +N +I+ + ++G    AL+    M    +  D++ 
Sbjct: 185 TCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFT 244

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           L S L   +   D   GK++  +V + G  S V++GS+L+D+YAK   I D+E +F  + 
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
            ++ +  N+L++GY +   +   L L R M    +       S+++ ACA L+    G+Q
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTS 267
           +H Y++R     G+++F+ S+L++MY KCG +  A ++F+         +N  D V WT+
Sbjct: 365 LHGYVLRG--GFGSNIFIASALVDMYSKCGNIKAARKIFD--------RMNVLDEVSWTA 414

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           ++  +  +G+  E + L+E M   G KP++VAFV V++ACSH G V     YF  M   Y
Sbjct: 415 IIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVY 474

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
            L    EHY+ + DLL RAG+L++A+  I++M     G    S+W  LLS+C      EL
Sbjct: 475 GLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTG----SVWSTLLSSCSVHKNLEL 530

Query: 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            +  A+K   +D  N+G YV++ N+YA    W E+ +LR  M++KGL+K   CSWIE+
Sbjct: 531 AEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEM 588



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 171/385 (44%), Gaps = 69/385 (17%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            K L     L +  VI  F        AL +F  M   G   D     S L + T + D 
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL--------------------------- 135
           RFG+ V   + + G    ++ G+AL+++YAKLL                           
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 136 ---------LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYD 186
                     I     +F+ +P K+ V  N +++GY ++ ++   L +VR M    L  D
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
            FTLS++L   +       G+++H Y+IRK   + +DV++ SSL++MY K   +  + +V
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRK--GIDSDVYIGSSLVDMYAKSARIEDSERV 299

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           F+    RL     +D + W S++  Y +NG + E ++L+  M+    KP  VAF +VI A
Sbjct: 300 FS----RL---YCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPA 352

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEM--L 360
           C+H   + LG +     +H Y L  G        S LVD+  + G +  A K+ + M  L
Sbjct: 353 CAHLATLHLGKQ-----LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVL 407

Query: 361 DR-------------GHGSSSVSMW 372
           D              GHG  +VS++
Sbjct: 408 DEVSWTAIIMGHALHGHGHEAVSLF 432



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 132/322 (40%), Gaps = 46/322 (14%)

Query: 97  TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
           T +K     KQ+ A   ++  LS     S +I +Y  L L+H+A L+F  +     +   
Sbjct: 16  TRIKSKSQAKQLHAQFIRTQSLSHT-SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWK 74

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           +++  + +  L++  L     M A G   DH    ++L++C  +    FG  VH +++R 
Sbjct: 75  SVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVR- 133

Query: 217 CCNLGNDVFMQSSLIEMYGK---CGLVTKALQVFNLAGHR-------------------- 253
              +  D++  ++L+ MY K    G       VF+    R                    
Sbjct: 134 -LGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGI 192

Query: 254 ------LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
                  E    KDVV + +++  Y ++G +++ +++   M     KPD     +V+   
Sbjct: 193 DSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIF 252

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRG 363
           S    V  G E     +H Y +  G +      S LVD+  ++  ++ + ++ + +  R 
Sbjct: 253 SEYVDVIKGKE-----IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRD 307

Query: 364 HGSSSVSMWGALLSACHDCGKF 385
             S     W +L++     G++
Sbjct: 308 GIS-----WNSLVAGYVQNGRY 324


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/403 (33%), Positives = 230/403 (57%), Gaps = 13/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+ L  R+ + +  +I+ + ++     AL TF  M   G++ D   L S+ +A   +K  
Sbjct: 404 LEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAM 463

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G Q+ A V  SG+ + + + + L++LYA+     +A  +F EI  K+ +  N L+SG+
Sbjct: 464 RQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGF 523

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +++L+   L +   M   G  Y+ FT  + + A A L+  + G+QVH   ++       
Sbjct: 524 GQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSET 583

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +V   ++LI +YGKCG +  A  +F+    R E       V W +++    ++G   E +
Sbjct: 584 EV--ANALISLYGKCGSIEDAKMIFSEMSLRNE-------VSWNTIITSCSQHGRGLEAL 634

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L++ M   G KP++V F+ V++ACSH G V+ G+ YF+ M + Y L P P+HY+C+VD+
Sbjct: 635 DLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDI 694

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG+LD+A + ++EM      +++  +W  LLSAC      E+G+LAA+  LEL+PH+
Sbjct: 695 LGRAGQLDRARRFVDEMPI----TANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHD 750

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              YV+LSN YA    W    Q+R++MK++G++K+ G SWIEV
Sbjct: 751 SASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEV 793



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 180/367 (49%), Gaps = 21/367 (5%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            K L+ R+ + +  ++S + ++G    A + +S MH   +    Y L S L+A T  K  
Sbjct: 101 FKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLF 160

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             G+ + A V K  + S  FVG+ALI LY        AE +F ++   + V  N L+SG+
Sbjct: 161 AQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGH 220

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       L++   M   GL  D  T+++LL ACA +   + G+Q+H+Y+++    +  
Sbjct: 221 AQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLK--AGMSF 278

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D   + SL+++Y KCG +  A  +FNL G R       +VVLW  ML  YG+     +  
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNL-GDR------TNVVLWNLMLVAYGQISDLAKSF 331

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSC 338
           +++  M   G  P++  +  ++  C+ TGQ++LG +     +H   ++ G E        
Sbjct: 332 EIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQ-----IHSLSIKNGFESDMYVSGV 386

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           L+D+  + G LDKA K++ EML++    S  SM    +   HD  +  L      +   +
Sbjct: 387 LIDMYSKYGCLDKARKIL-EMLEKRDVVSWTSMIAGYVQ--HDFCEEALATFKEMQDCGV 443

Query: 399 DPHNVGI 405
            P N+G+
Sbjct: 444 WPDNIGL 450



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 174/392 (44%), Gaps = 28/392 (7%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           I +  L+  Y  C    ++ T  +     +  N + +N+++  + +      + + F  M
Sbjct: 281 ITEGSLLDLYVKC---GDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQM 337

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
              GI  + +     L   T       G+Q+ +   K+G+ S ++V   LID+Y+K   +
Sbjct: 338 QATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCL 397

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
             A  + + +  ++ V   ++++GY +       L   + M   G+  D+  L++   AC
Sbjct: 398 DKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASAC 457

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           AG+ A   G Q+HA +         D+ + ++L+ +Y +CG   +A  +F    H     
Sbjct: 458 AGIKAMRQGLQIHARVY--VSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEH----- 510

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
             KD + W  ++  +G++  +K+ + ++  M   G K +   F++ ISA ++   +K G 
Sbjct: 511 --KDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGK 568

Query: 318 EYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           +     VH   ++ G     E  + L+ L  + G ++ A  + +EM  R   S     W 
Sbjct: 569 Q-----VHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-----WN 618

Query: 374 ALLSACHDCGK-FELGKLAAQKALE-LDPHNV 403
            ++++C   G+  E   L  Q   E L P++V
Sbjct: 619 TIITSCSQHGRGLEALDLFDQMKQEGLKPNDV 650



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 169/379 (44%), Gaps = 70/379 (18%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++ A     G  +   +G+ LIDLYAK  L+  A  +F E+  ++ V   A+LSGY ++ 
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L      L   M    +    + LS++L AC        GR +HA + ++     ++ F+
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQA--FCSETFV 181

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++LI +Y   G        F LA       +  D V + +++  + + G+ +  +++++
Sbjct: 182 GNALIALYLGFG-------SFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFD 234

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDL 342
            M ++G +PD V   ++++AC+  G ++ G +     +H Y L+ G          L+DL
Sbjct: 235 EMQLSGLRPDCVTVASLLAACASVGDLQKGKQ-----LHSYLLKAGMSFDYITEGSLLDL 289

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA------------------------ 378
             + G+++ A  + N + DR    ++V +W  +L A                        
Sbjct: 290 YVKCGDIETAHDIFN-LGDR----TNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHP 344

Query: 379 -----------CHDCGKFELGK----LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423
                      C   G+ ELG+    L+ +   E D +  G+ +   ++Y+K+   D+  
Sbjct: 345 NQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLI---DMYSKYGCLDKAR 401

Query: 424 QLRELMKEKGLKKDVGCSW 442
           ++ E+++    K+DV  SW
Sbjct: 402 KILEMLE----KRDV-VSW 415



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 10/120 (8%)

Query: 190 LSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           L+  L+AC G         ++HA  + +   LG D  + + LI++Y K GLV +A QVF 
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVR--GLGADRLIGNLLIDLYAKNGLVWQARQVFK 102

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               R       D V W +ML  Y ++G  KE  +LY  M      P      +V+SAC+
Sbjct: 103 ELSSR-------DHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACT 155


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/421 (33%), Positives = 230/421 (54%), Gaps = 16/421 (3%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           YT C     L +       ++ +    +N ++  + +N  P  AL  +  M   G+  D 
Sbjct: 352 YTRC---GALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDW 408

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           + + S L A + +K   +G+++     ++G     F+G +L+ LY        A+++FD 
Sbjct: 409 FTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDG 468

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +  ++ V  N +++GY +  L    + L R M + G+      +  +  AC+ LSA   G
Sbjct: 469 MEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLG 528

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           +++H + ++   +L  D+F+ SS+I+MY K G +  + ++F+    RL     KDV  W 
Sbjct: 529 KELHCFALK--AHLTEDIFVSSSIIDMYAKGGCIGLSQRIFD----RLR---EKDVASWN 579

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
            ++  YG +G  KE ++L+E ML  G KPD+  F  ++ ACSH G V+ G+EYF  M++ 
Sbjct: 580 VIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNL 639

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           + +EP  EHY+C+VD+L RAG +D A +LI EM     G     +W +LLS+C   G   
Sbjct: 640 HNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEM----PGDPDSRIWSSLLSSCRIHGNLG 695

Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           LG+  A K LEL+P     YV++SNL+A    WD++ ++R  MK+ GL+KD GCSWIEV 
Sbjct: 696 LGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVG 755

Query: 447 G 447
           G
Sbjct: 756 G 756



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 156/362 (43%), Gaps = 23/362 (6%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL--DTYALCSSLTASTSVKDARF 104
           + +N + +N +I  + R             M      +  D + + + L       + + 
Sbjct: 266 DKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQS 325

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            K++  +  + G  S+  V +A I  Y +   +  +E +FD +  K     NALL GY +
Sbjct: 326 LKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQ 385

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L+L   M   GLD D FT+ +LL AC+ + +  +G ++H + +R    L  D 
Sbjct: 386 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRN--GLAVDP 443

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+  SL+ +Y  CG    A  +F+   HR        +V W  M+  Y +NG   E I L
Sbjct: 444 FIGISLLSLYICCGKPFAAQVLFDGMEHR-------SLVSWNVMIAGYSQNGLPDEAINL 496

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY--FEWMVHDYKLEPGPEHYSCLVDL 342
           +  ML +G +P E+A + V  ACS    ++LG E   F    H   L       S ++D+
Sbjct: 497 FRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH---LTEDIFVSSSIIDM 553

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDP 400
             + G +  + ++ + + ++      V+ W  +++    H  GK  L        L L P
Sbjct: 554 YAKGGCIGLSQRIFDRLREK-----DVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKP 608

Query: 401 HN 402
            +
Sbjct: 609 DD 610



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 158/368 (42%), Gaps = 31/368 (8%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFS-F 76
           +  +R++  Y+ C    +   + + L+    +N   +N ++S + RN     A+  FS  
Sbjct: 35  VLNTRIITMYSMCGSPSDSRMVFDKLR---RKNLFQWNAIVSAYTRNELFEDAMSIFSEL 91

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           + V     D + L   + A   + D   G+ +    TK   +S VFVG+ALI +Y K  L
Sbjct: 92  ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL 151

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALL 194
           + +A  +F+ +P +N V  N+++ G+ E           R M      +  D  TL  +L
Sbjct: 152 VEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVL 211

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
             CAG    E G  VH   ++    L  ++ + +SLI+MY KC  +++A  +F       
Sbjct: 212 PVCAGEEDIEKGMAVHGLAVK--LGLNEELMVNNSLIDMYSKCRFLSEAQLLF------- 262

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT--KPDEVAFVTVISACSHTGQ 312
           +    K++V W SM+G Y R         L + M       K DE   + V+  C    +
Sbjct: 263 DKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSE 322

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL----CRAGELDKAWKLINEMLDRGHGSSS 368
           ++   E     +H Y    G +    + +       R G L  + ++ + M      + +
Sbjct: 323 LQSLKE-----LHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLM-----DTKT 372

Query: 369 VSMWGALL 376
           VS W ALL
Sbjct: 373 VSSWNALL 380



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           +  LL+AC      E GR++H  M+       ND  + + +I MY  CG  + +  VF+ 
Sbjct: 1   MGVLLQACGQRKDIEVGRRLHE-MVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFD- 58

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACS 308
              +L     K++  W +++  Y RN  F++ + ++  ++ +   KPD      VI AC+
Sbjct: 59  ---KLR---RKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA 112

Query: 309 HTGQVKLGI-EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
             G + LG+ +    M     L       + L+ +  + G +++A K+   M +R
Sbjct: 113 --GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPER 165


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/400 (33%), Positives = 231/400 (57%), Gaps = 15/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I+   +NG+ L A+  F  M   GI  D   +   + A  ++ + + G  V
Sbjct: 170 RDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSV 229

Query: 109 QAH-VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
             H V +   +  V + ++L+D+YAK+  +  A  +F+++P KN+V   AL+SG+ +   
Sbjct: 230 HGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGF 289

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               L+L+  M +L    D   L + L AC+ +   + G+ +H Y++R+   LG ++ + 
Sbjct: 290 AEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRR---LGFELVLG 346

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+MY KCG ++ A  +F+    R       DV+LW +M+  YG +G  KEV+ L+  
Sbjct: 347 TALIDMYAKCGSLSCAHAIFDRVDSR-------DVILWNTMIASYGIHGDGKEVLSLFLK 399

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M      PD   F +++SA SH+GQV +G  +F  MV++ K+ P  +HY+C+VDL  RAG
Sbjct: 400 MKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAG 459

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            +++A++LI  M    +    +++W ALLS CH+      G++AA+K L+L+P ++GIY 
Sbjct: 460 RVEEAYQLIESM----NTEPGLAIWVALLSGCHNYRNLLFGEVAAKKILDLNPDDLGIYA 515

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           ++SN ++   MWD +  LR++MKE G+KK  G S +EV G
Sbjct: 516 LVSNFFSLARMWDRVSILRKIMKETGMKKVPGYSAVEVNG 555



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 175/371 (47%), Gaps = 21/371 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R    +N +I  + R       L  +  M   G   D+     ++ AS+S+KD   G
Sbjct: 66  LPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAG 125

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +++       G+   VFVGS++++LY K   I +A+L+FD++  ++ VC   +++G  + 
Sbjct: 126 ERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQN 185

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 +++ R M   G++ D   +  L++ACA L   + G  VH + +R+   L +DV 
Sbjct: 186 GNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREM-LMDDVI 244

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q+SL++MY K G +  A +VF       E    K+ V W +++  + +NG+ +  + L 
Sbjct: 245 LQTSLVDMYAKIGDLELASRVF-------EQMPRKNAVSWGALISGFAQNGFAEYALDLL 297

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD--YKLEPGPEHYSCLVDLL 343
             M     KPD    V+ + ACS  G +KLG     ++V    ++L  G    + L+D+ 
Sbjct: 298 VEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGFELVLG----TALIDMY 353

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCGKFELGKLAAQKALELDPH 401
            + G L  A  + + +      S  V +W  ++++   H  GK  L      K   + P 
Sbjct: 354 AKCGSLSCAHAIFDRV-----DSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPD 408

Query: 402 NVGIYVMLSNL 412
           +     +LS L
Sbjct: 409 HATFASLLSAL 419



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 151/321 (47%), Gaps = 26/321 (8%)

Query: 100 KDARFGKQVQAHVTKSG--WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANA 157
           KD     Q+ A +  +G  + +S F G  +I  YA++  I  A  +FD++P +     NA
Sbjct: 18  KDEAPVTQIHALIITTGLFFANSNFNG-LVIASYARIGGITSARHLFDKLPQRGVDAWNA 76

Query: 158 LLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           ++  Y         L L   M   G   D  T +  ++A + L   E G ++     R+ 
Sbjct: 77  MIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIW----RRA 132

Query: 218 CNLGN--DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
            + G   DVF+ SS++ +Y KCG + +A  VF       +  + +DVV W +M+    +N
Sbjct: 133 VDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVF-------DKMVKRDVVCWATMITGLVQN 185

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G   E + ++  M   G + D V  + ++ AC++ G++KLG+      V    L      
Sbjct: 186 GNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVIL 245

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG--KFELGKLAAQ 393
            + LVD+  + G+L+ A ++  +M  +    ++VS WGAL+S     G  ++ L  L   
Sbjct: 246 QTSLVDMYAKIGDLELASRVFEQMPRK----NAVS-WGALISGFAQNGFAEYALDLLVEM 300

Query: 394 KALELDPHNVGIYVMLSNLYA 414
           ++LE  P      V++S L A
Sbjct: 301 QSLEFKPDTA---VLVSALLA 318


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 240/448 (53%), Gaps = 27/448 (6%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVI 58
           VH H  ++        IF+  L++  T        G+L    K  +    R+ + +  +I
Sbjct: 73  VHGHLIQS--------IFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLI 124

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           S + ++  P  AL  F+ M   G   + + L S + A+ + +    G Q+     K G+ 
Sbjct: 125 SGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFD 184

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S+V VGSAL+DLY +  L+ DA+L+FD +  +N V  NAL++G+         LEL + M
Sbjct: 185 SNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGM 244

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              G    HF+ ++L  AC+     E G+ VHAYMI+    L    F  ++L++MY K G
Sbjct: 245 LREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLV--AFAGNTLLDMYAKSG 302

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A ++F+    R       DVV W S+L  Y ++G+  E +  +E M   G +P+E+
Sbjct: 303 SIHDARKIFDRLAKR-------DVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEI 355

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHD-YKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           +F++V++ACSH+G +  G  Y+E M  D   LE    HY  +VDLL RAG+L++A + I 
Sbjct: 356 SFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAW--HYVTIVDLLGRAGDLNRALRFIE 413

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
           EM        + ++W ALL+AC      ELG  AA+   ELDP + G +V+L N+YA   
Sbjct: 414 EMPI----EPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGG 469

Query: 418 MWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            W++  ++R+ MKE G+KK+  CSW+E+
Sbjct: 470 RWNDAARVRKKMKESGVKKEPACSWVEI 497



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 167/336 (49%), Gaps = 26/336 (7%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+ V  H+ +S +   + + + L+++YAK   + +A  +FD++P ++ V    L+SGY +
Sbjct: 70  GRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQ 129

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L L   M   G   + FTLS++++A A       G Q+H + ++  C   ++V
Sbjct: 130 HDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK--CGFDSNV 187

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + S+L+++Y + GL+  A  VF+     LE   +++ V W +++  + R    ++ ++L
Sbjct: 188 HVGSALLDLYTRYGLMDDAQLVFDA----LE---SRNDVSWNALIAGHARRCGTEKALEL 240

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLV 340
           ++ ML  G +P   ++ ++  ACS TG ++ G    +W VH Y ++ G +  +     L+
Sbjct: 241 FQGMLREGFRPSHFSYASLFGACSSTGFLEQG----KW-VHAYMIKSGEKLVAFAGNTLL 295

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALEL 398
           D+  ++G +  A K+ + +  R      V  W +LL+A   H  G   +      +   +
Sbjct: 296 DMYAKSGSIHDARKIFDRLAKR-----DVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGI 350

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
            P+ +    +L+   +   + DE     ELMK+ G+
Sbjct: 351 RPNEISFLSVLTAC-SHSGLLDEGWHYYELMKKDGI 385


>gi|296088921|emb|CBI38481.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/418 (33%), Positives = 229/418 (54%), Gaps = 16/418 (3%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY 87
           TT   +    T     +   PRN    +  +   C +G  + A+       +  +   TY
Sbjct: 36  TTLLRRIQSETSNGSFQVQPPRNSFHLDETLKGLCFSGRVMEAVGLLCRTGLQ-VEPATY 94

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           AL   L      K+ + G+++ A +   G+    ++ + L+ L+AK   +  + ++FD++
Sbjct: 95  ALL--LQECIFKKEFKTGRRIHAQMIVVGYYPDEYLKTKLLILHAKTGDLDTSHILFDDL 152

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
             K+ +  NA+++GY +  L   GL L   M   GL  D +T +++ RACA L+  E G+
Sbjct: 153 SKKSLISWNAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACATLATLEKGK 212

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q H  MI+    +  +V + S+L++MY KC  +    +VFN +       +N++V+ WT+
Sbjct: 213 QAHCVMIKS--QIKENVVVNSALMDMYFKCSSLYDGHRVFNKS-------LNRNVITWTA 263

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           ++  YG++G   EV+  +  M   G +P+ V F+ VISACSH G V  G EYF  M  DY
Sbjct: 264 LISGYGQHGRVAEVLVFFSKMKTEGFRPNYVTFLAVISACSHGGLVNEGWEYFMSMTRDY 323

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
            ++P  +HY+ +VDLL RAG L +A++ +    +   G  SV +WGALL AC   G  ++
Sbjct: 324 GIQPRGQHYAAMVDLLGRAGRLHEAFEFVQ---NSPCGEHSV-IWGALLGACRVHGNIDM 379

Query: 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            + AA+K  +L+P N G YV+LSN YA F +WD + ++R +M+E G++KD G S IEV
Sbjct: 380 LRFAAKKYFDLEPENAGKYVVLSNAYATFGLWDNVAEVRGVMRESGMRKDPGYSRIEV 437


>gi|413934541|gb|AFW69092.1| hypothetical protein ZEAMMB73_188982 [Zea mays]
          Length = 630

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 143/417 (34%), Positives = 225/417 (53%), Gaps = 16/417 (3%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALC 90
           H    G      + +   + + +  +IS F RN     AL+ F  M    G++ D     
Sbjct: 191 HSGAPGDARKAFEEMRAPDGICYTSLISAFVRNDWFDEALRWFQAMLRTDGVWPDGCTFG 250

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S ++A  ++K AR G++  A V   G   +V V S+ +D+YAK  ++ DA  +FD +   
Sbjct: 251 SMMSALGNMKRARQGREAHAQVVTRGLCGNVIVESSTLDMYAKCGMMVDARKVFDRMKAP 310

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N+V   ALL GYC+       L L R M     D D ++L  LLR+CAGLSA + G+++H
Sbjct: 311 NAVSWCALLGGYCQTGKHEKVLSLFRQMHMQEQDDDWYSLGTLLRSCAGLSAVKLGKEIH 370

Query: 211 AYMIR-KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
              +R + C    DV ++S+L+++Y KCG V  A +VF ++  R       +++ W +M+
Sbjct: 371 CRSMRMRGCG---DVIVESALVDLYAKCGAVDYAYRVFKMSSVR-------NMITWNAMI 420

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
               +NG+ +  I L+  M+  G KPD ++F+ V+ ACSHTG V+ G  YF  M  DY +
Sbjct: 421 CGCAQNGHGERAISLFNEMVRGGVKPDYISFIGVLFACSHTGMVEEGRNYFNSMSKDYGI 480

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
            PG EHY+C+VDLL R   L++A  L+N+   R       S+W A+L AC      ++  
Sbjct: 481 PPGIEHYNCIVDLLSRVELLEEAEDLVNKSQFR----DDSSLWAAILGACATHTNPDVAV 536

Query: 390 LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
             A+K +EL+P     YV+L N+Y     W++  ++R+LMK + +KK+ G SWI   
Sbjct: 537 RVAKKMMELEPQYHLSYVLLENVYRTIGHWEDAVKVRKLMKSRKVKKEPGTSWINAN 593



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 156/353 (44%), Gaps = 32/353 (9%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLD------TYALCSSLTASTSV 99
           L  R+ +  + V++ F R G P  AL     M   G   D       +AL +S  A   +
Sbjct: 98  LPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMASGGYGADDDVAPSAHALSASAKACAVL 157

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
            D R G  V       G+     V SAL+D+Y       DA   F+E+   + +C  +L+
Sbjct: 158 HDLRAGACVHGTTVVRGYGDDGVVLSALVDMYGHSGAPGDARKAFEEMRAPDGICYTSLI 217

Query: 160 SGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           S +     +   L   + M    G+  D  T  +++ A   +  A  GR+ HA ++ +  
Sbjct: 218 SAFVRNDWFDEALRWFQAMLRTDGVWPDGCTFGSMMSALGNMKRARQGREAHAQVVTR-- 275

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
            L  +V ++SS ++MY KCG++  A +VF+    R++     + V W ++LG Y + G  
Sbjct: 276 GLCGNVIVESSTLDMYAKCGMMVDARKVFD----RMKA---PNAVSWCALLGGYCQTGKH 328

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-----DYKLEPGP 333
           ++V+ L+  M M     D  +  T++ +C+    VKLG E     +      D  +E   
Sbjct: 329 EKVLSLFRQMHMQEQDDDWYSLGTLLRSCAGLSAVKLGKEIHCRSMRMRGCGDVIVE--- 385

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
              S LVDL  + G +D A+++      R     ++  W A++  C   G  E
Sbjct: 386 ---SALVDLYAKCGAVDYAYRVFKMSSVR-----NMITWNAMICGCAQNGHGE 430



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 35/279 (12%)

Query: 122 FVGSALIDLYAKLL--LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           ++ +AL+  Y +L   L H A   FD++P ++ V  +++L+ +  A L    L  +R M 
Sbjct: 72  YLANALLAFYVRLPDHLPH-ALRAFDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMA 130

Query: 180 ALGLDYDH------FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           + G   D         LSA  +ACA L     G  VH   + +    G+D  + S+L++M
Sbjct: 131 SGGYGADDDVAPSAHALSASAKACAVLHDLRAGACVHGTTVVR--GYGDDGVVLSALVDM 188

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNG 292
           YG  G    A + F       E     D + +TS++  + RN +F E ++ ++AML  +G
Sbjct: 189 YGHSGAPGDARKAF-------EEMRAPDGICYTSLISAFVRNDWFDEALRWFQAMLRTDG 241

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-----DYKLEPGPEHYSCLVDLLCRAG 347
             PD   F +++SA  +  + + G E    +V      +  +E      S  +D+  + G
Sbjct: 242 VWPDGCTFGSMMSALGNMKRARQGREAHAQVVTRGLCGNVIVE------SSTLDMYAKCG 295

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            +  A K+     DR    ++VS W ALL      GK E
Sbjct: 296 MMVDARKV----FDRMKAPNAVS-WCALLGGYCQTGKHE 329


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 140/396 (35%), Positives = 223/396 (56%), Gaps = 13/396 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I+   +NG    A+  F  M + G  +D +   S LTA         GKQ+
Sbjct: 233 KDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQI 292

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A++ ++ +  ++FVGSAL+D+Y K   +  AE +F ++  KN +   A+L GY +    
Sbjct: 293 HAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYS 352

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + +   M    +  D FTL +++ +CA L++ E G Q H   +     L   V + +
Sbjct: 353 EEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQAL--ASGLICFVTVSN 410

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI +YGKCG +  A Q+F+      E +I +D V WT+++  Y + G   E I L+E M
Sbjct: 411 ALITLYGKCGSLEHAHQLFH------EMKI-RDEVSWTALVSGYAQFGKANETISLFETM 463

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L +G  PD V FV V+SACS  G V+ G  YFE MV ++++ P P+HY+C++DLL RAG 
Sbjct: 464 LAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGR 523

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A   IN+M      S     W  LLS+C   G  E+GK AA+   +L+P N   Y++
Sbjct: 524 LEEAKNFINQM----PFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYIL 579

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           LS++YA    WD++ +LR+ M+E G+KK+ G SWI+
Sbjct: 580 LSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIK 615



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 179/369 (48%), Gaps = 55/369 (14%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYALCSSLTASTSVKDARFGKQVQA 110
           + +N ++S +  NG    +++ ++ M   G + L+     + L  S++      G+Q+  
Sbjct: 103 VSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHG 162

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            + K G+ S +FVGS L+D+YAK   I+DA  +F+EIP KN V  N +++G    +    
Sbjct: 163 QIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVE 222

Query: 171 GLELVRLMPA----------------------------LGLD---YDHFTLSALLRACAG 199
             +L   MP                             +G++    D FT  ++L AC G
Sbjct: 223 AEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGG 282

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
             A + G+Q+HAY+IR   +  +++F+ S+L++MY KC  V  A  VF    H       
Sbjct: 283 FLALDEGKQIHAYIIR--TDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRH------- 333

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           K+V+ WT+ML  YG+NGY +E ++++  M  N   PD+    +VIS+C++   ++ G ++
Sbjct: 334 KNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQF 393

Query: 320 FEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
                H   L  G   +    + L+ L  + G L+ A +L +EM  R   S     W AL
Sbjct: 394 -----HGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVS-----WTAL 443

Query: 376 LSACHDCGK 384
           +S     GK
Sbjct: 444 VSGYAQFGK 452



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 137/304 (45%), Gaps = 43/304 (14%)

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           D +  + V  H+ +     ++F  + L+  Y+KL  + D + +FD +P  + V  N+LLS
Sbjct: 55  DLKNARNVFDHIPQP----NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLS 110

Query: 161 GYCEAKLWAGGLELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           GY    L +  + +  +M   G ++ +  T S +L   +     + GRQ+H  + +    
Sbjct: 111 GYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFK--FG 168

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR------------------LEGE---- 257
             + +F+ S L++MY K G +  A ++F     +                  +E E    
Sbjct: 169 YQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFD 228

Query: 258 --INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
               KD + WT+++    +NG FKE +  ++ M + G   D+  F +V++AC     +  
Sbjct: 229 NMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDE 288

Query: 316 GIEYFEWMVH-DYK--LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           G +   +++  DY+  +  G    S L+D+ C+   +  A  +  +M  +     +V  W
Sbjct: 289 GKQIHAYIIRTDYQDNIFVG----SALLDMYCKCRNVKYAEAVFRKMRHK-----NVISW 339

Query: 373 GALL 376
            A+L
Sbjct: 340 TAML 343



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 37/205 (18%)

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
           ++  +AL   C   + A+  +++H  +IR   N   + F+ ++LI  YGK G +  A  V
Sbjct: 6   NYYTAALKFCCEARNRAQV-KKLHCRIIRTLTN--PETFLYNNLINTYGKLGDLKNARNV 62

Query: 247 FN-------------LAGHRLEGEI-----------NKDVVLWTSMLGVYGRNGYFKEVI 282
           F+             L+ +   G +           N DVV W S+L  Y  NG   E +
Sbjct: 63  FDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESV 122

Query: 283 KLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----S 337
           ++Y  ML +G+   + + F T++   S+ G V LG +     +H    + G + Y    S
Sbjct: 123 RVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQ-----IHGQIFKFGYQSYLFVGS 177

Query: 338 CLVDLLCRAGELDKAWKLINEMLDR 362
            LVD+  + G ++ A ++  E+ ++
Sbjct: 178 PLVDMYAKTGFINDANRIFEEIPEK 202


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/411 (33%), Positives = 222/411 (54%), Gaps = 13/411 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G   +  +    RN + ++ +I+ + +NG    A+  FS MH  G     +     L A
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 330

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
           S+ +     GKQ    + K G+   ++V SAL+D+YAK   I DA+  FD++   + V  
Sbjct: 331 SSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLW 390

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
            A++SG+ +       L L   M   G+     T+++ LRACAG++A E G+Q+H  +++
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 450

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
               LG  V   S+L  MY KCG +   + VF     R+    ++DV+ W S++  + +N
Sbjct: 451 YGLGLGAPV--GSALSTMYSKCGNLEDGMSVFR----RIP---DRDVIAWNSIISGFSQN 501

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G     + L+E M M GT PD + F+ ++ ACSH G V  G EYF  M  DY L P  +H
Sbjct: 502 GCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDH 561

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
           Y+C+VD+L RAG L +A   I E +   HG+    +W  +L AC     F++G  A ++ 
Sbjct: 562 YACMVDILSRAGMLKEAKDFI-ESITIDHGT---CLWRIVLGACRSLRDFDVGAYAGERL 617

Query: 396 LELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +EL   +   Y++LSN+YA    W+++ ++R LM+ +G+ KD GCSW+E+ 
Sbjct: 618 MELGTRDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELN 668



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 139/304 (45%), Gaps = 21/304 (6%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            G+Q+   + K G L  V V ++L+ +YAK   +  A  +F+    +NS+  +A+++GY 
Sbjct: 238 MGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYA 297

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           +       + +   M A G     FT   +L A + L A   G+Q H  M++    LG +
Sbjct: 298 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVK----LGFE 353

Query: 224 V--FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           V  +++S+L++MY KCG +  A + F+            D+VLWT+M+  + +NG  +E 
Sbjct: 354 VQIYVKSALVDMYAKCGCIADAKEGFDQL-------YEVDIVLWTAMVSGHVQNGEHEEA 406

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           + LY  M   G  P +    + + AC+    ++ G +    +V  Y L  G    S L  
Sbjct: 407 LTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIV-KYGLGLGAPVGSALST 465

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELD 399
           +  + G L+    +   + DR      V  W +++S  + + CG   L      K     
Sbjct: 466 MYSKCGNLEDGMSVFRRIPDR-----DVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTI 520

Query: 400 PHNV 403
           P N+
Sbjct: 521 PDNI 524



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 135/275 (49%), Gaps = 26/275 (9%)

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           +S+V+V ++L+++Y KL ++ DA  MFD +P +NS   + +++GY   K      +L RL
Sbjct: 150 VSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRL 209

Query: 178 M----PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           M    P+   +   F  +A+L A +       G Q+H  +++    L + V +++SL+ M
Sbjct: 210 MLEECPS---EKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKD--GLLDFVSVENSLVTM 264

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G +  A  VF       E    ++ + W++M+  Y +NG     + ++  M   G 
Sbjct: 265 YAKAGCMGAAFHVF-------ESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGF 317

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDK 351
            P E  FV V++A S  G + +G +    MV   KL    + Y  S LVD+  + G +  
Sbjct: 318 TPTEFTFVGVLNASSDLGALAVGKQAHGLMV---KLGFEVQIYVKSALVDMYAKCGCIAD 374

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           A +  +++ +       + +W A++S     G+ E
Sbjct: 375 AKEGFDQLYE-----VDIVLWTAMVSGHVQNGEHE 404


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 136/429 (31%), Positives = 243/429 (56%), Gaps = 20/429 (4%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           +++ Y+ C    ++ T     + +  ++ + +N +IS F +NG     L     M   G 
Sbjct: 245 ILVMYSRC---NSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGF 301

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             D+  + S L+A++++++   GKQ  A++ + G +    + S LID+YAK  LI  ++ 
Sbjct: 302 IADSVTVTSLLSAASNLRNREIGKQTHAYLIRHG-IKFDGMDSYLIDMYAKSGLIRISQR 360

Query: 143 MFDEIPVKNSVCA--NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
           +F+   ++N   A  NA+++GY +  L        RLM    L  +  TL+++L AC+ L
Sbjct: 361 VFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSL 420

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
            +   G+Q+H   IR   +L  ++F++++L++MY K G +  A  VF  +  R       
Sbjct: 421 GSINLGKQLHGVSIR--YSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSER------- 471

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           + V +T+M+  YG++G  +  + L+ +M  +G +PD + FV V+SACS+ G V  G+  F
Sbjct: 472 NSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIF 531

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           E M  D+K++P   HY C+ D+L R G + +A++ + ++ + GH    + +WG+LL AC 
Sbjct: 532 ESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGH---VIEIWGSLLGACR 588

Query: 381 DCGKFELGKLAAQKALELDPHN--VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
             G  ELG+  + + LE++  +   G  V+LSN+YA+   W+ + +LR+ M+EKGL+K+V
Sbjct: 589 LHGHIELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKGLRKEV 648

Query: 439 GCSWIEVTG 447
           GCSWI+  G
Sbjct: 649 GCSWIDTGG 657



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 177/379 (46%), Gaps = 16/379 (4%)

Query: 36  LGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCS 91
           LG L  C K  +    ++   +N +I    +N S L  +  F   M      LD     S
Sbjct: 150 LGCLDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLS 209

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           +LTA + ++    G+Q+ A   K+  + SV V +A++ +Y++   +  +  +F+++P K+
Sbjct: 210 ALTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKD 269

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N ++SG+ +  L   GL LV  M   G   D  T+++LL A + L   E G+Q HA
Sbjct: 270 VVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHA 329

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           Y+IR          M S LI+MY K GL+  + +VF    + ++   N+D   W +++  
Sbjct: 330 YLIRHGIKFDG---MDSYLIDMYAKSGLIRISQRVFE--NNNIQ---NRDQATWNAVIAG 381

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           Y +NG  ++    +  ML    +P+ V   +++ ACS  G + LG +     +  Y L+ 
Sbjct: 382 YTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIR-YSLDQ 440

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
                + LVD+  ++G ++ A  +  +  +R   + +  + G      H  G+  L    
Sbjct: 441 NIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGY---GQHGMGENALSLFH 497

Query: 392 AQKALELDPHNVGIYVMLS 410
           + K   + P  +    +LS
Sbjct: 498 SMKKSGIQPDAITFVAVLS 516



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 173/379 (45%), Gaps = 25/379 (6%)

Query: 39  LTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTS 98
           L    K ++ R+ + +N ++S + +    + A++ F  M   GI     +  +   A +S
Sbjct: 53  LHKVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISS 112

Query: 99  VKDARFGKQVQAHVTKSG--WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
           V D +    +   + K G  + + +FV S+ I +YA+L  +     +FD    K++   N
Sbjct: 113 VGDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWN 172

Query: 157 ALLSGYCEAKLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
            ++ G+ +   +  G+ L ++ M       D  T  + L A + L     G+Q+HA+ ++
Sbjct: 173 TMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMK 232

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
               L   V   ++++ MY +C  V  + +VF       E    KDVV W +M+  + +N
Sbjct: 233 NHTVLSVTVL--NAILVMYSRCNSVQTSFEVF-------EKMPEKDVVSWNTMISGFIQN 283

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPE 334
           G  +E + L   M   G   D V   +++SA S+    ++G +   +++ H  K + G +
Sbjct: 284 GLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFD-GMD 342

Query: 335 HYSCLVDLLCRAGELDKAWKLI--NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
            Y  L+D+  ++G +  + ++   N + +R   +     W A+++     G  E   +  
Sbjct: 343 SY--LIDMYAKSGLIRISQRVFENNNIQNRDQAT-----WNAVIAGYTQNGLVEQAFITF 395

Query: 393 QKALE--LDPHNVGIYVML 409
           +  LE  L P+ V +  +L
Sbjct: 396 RLMLEQNLRPNAVTLASIL 414


>gi|326528345|dbj|BAJ93354.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 609

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 224/405 (55%), Gaps = 17/405 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +IS   ++GSPL AL+ F+ M    +  D   L + L A   + D    +  
Sbjct: 177 RDVVSWTSLISRLVQSGSPLQALRLFAAMMCCDVRPDFVLLVTVLKAYMELDDLPGAQSA 236

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSVCANALLSGYCEAK 166
            + V K G+     V + L  +YAK   I  A  +FD IP    N +  NA++SGY +  
Sbjct: 237 HSLVVKGGFDDEQDVVTTLTAMYAKFGCIVAARALFDRIPPPRVNVILWNAMISGYSKNG 296

Query: 167 LWAGGLELVRLMP--ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           L +  + L + M   A  +  D  TL +++ ACA L + E    +  Y+ R  C    DV
Sbjct: 297 LASEAVHLFKQMQVFARSMSPDSVTLRSVIMACAQLGSTELAVWMEDYVRRSECR--EDV 354

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + ++LI+MY K G +  A +VF     ++  +  +DVV+W++++  YG +G+  E + L
Sbjct: 355 LVNTALIDMYAKSGSIAHARRVFE----QMHAQ-ERDVVVWSALISGYGAHGHLAEAVGL 409

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +E M + G KP++V F+ ++SAC+H G V+ G  YF  M  D+K+EP  +HY+C+VDLL 
Sbjct: 410 FEDMKLAGVKPNDVTFLGLLSACNHAGAVEKGWFYFHSMKPDHKIEPRHQHYACVVDLLA 469

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHN 402
           RAG+LD+A++ I +M  +      +S+WGALL  C  H+     + + AAQ   EL+  N
Sbjct: 470 RAGQLDRAYRFILDMPIK----PEMSVWGALLHGCKVHEHSNMAMAERAAQHIFELEQSN 525

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            G YV L+N+YA   MW  +  +R  M+E+G+ K  GCS IEV G
Sbjct: 526 AGHYVQLANMYASAGMWSHVAGVRATMRERGVTKATGCSSIEVDG 570



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           GR  HA+ +R     G+  F+ +SLI MY  CG   +A +VF+  G R   +  +DVV W
Sbjct: 130 GRVAHAHGLR--LTDGDTRFLHNSLIPMYFSCGDAGRARRVFD--GMR---DCERDVVSW 182

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           TS++    ++G   + ++L+ AM+    +PD V  VTV+ A
Sbjct: 183 TSLISRLVQSGSPLQALRLFAAMMCCDVRPDFVLLVTVLKA 223


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/406 (33%), Positives = 220/406 (54%), Gaps = 15/406 (3%)

Query: 42  CLKF--LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           CL F  +  ++ + +N +I+   +N      L  F  M    +  D Y   S + A    
Sbjct: 427 CLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGK 486

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           K   +G +V   V KSG     FVGSA+ID+Y K  ++ +AE + + +  + +V  N+++
Sbjct: 487 KALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSII 546

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           SG+   K     L     M  +G+  D+FT + +L  CA L+  E G+Q+H  +++    
Sbjct: 547 SGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILK--LQ 604

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L +DV++ S++++MY KCG +  +  +F  A  R       D V W++M+  Y  +G  +
Sbjct: 605 LHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKR-------DYVTWSAMICAYAYHGLGE 657

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           + IKL+E M +   KP+   F++V+ AC+H G V  G+ YF  M   Y L+P  EHYSC+
Sbjct: 658 DAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCM 717

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL R+G++++A +LI  M       +   +W  LL  C   G  E+ + AA   L+LD
Sbjct: 718 VDLLGRSGQVNEALELIESM----PFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLD 773

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           P +   YV+LSN+YA   MW E+ ++R  MK   LKK+ GCSWI+V
Sbjct: 774 PQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQV 819



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/458 (24%), Positives = 208/458 (45%), Gaps = 60/458 (13%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++  + L+  Y+TC   K L    N    +  RN + ++ VI+ + RN      LK +  
Sbjct: 205 VVTGTALVDMYSTC---KKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKV 261

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+ +      S+  +   +     G Q+ A+  K+ +     VG+A +D+YAK   
Sbjct: 262 MLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDR 321

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DA  +F+  P       NAL+ GY         LE+ R +    LD+D  +LS  L A
Sbjct: 322 MVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTA 381

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+ +     G Q+H   ++  C L  ++ + +++++MY KCG + +A  +F+      + 
Sbjct: 382 CSAIKGYLEGIQLHGLAVK--CGLDFNICVANTILDMYAKCGALMEACLIFD------DM 433

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           EI KD V W +++  + +N + +E + L+ +ML +  +PD+  F +V+ AC+    +  G
Sbjct: 434 EI-KDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYG 492

Query: 317 IEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRG--------- 363
           +E     VH   ++ G        S ++D+ C+ G L +A K+   + +R          
Sbjct: 493 ME-----VHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIIS 547

Query: 364 ------HGSSSVS---------------MWGALLSACHDCGKFELGKLAAQKALELDPH- 401
                  G +++S                +  +L  C +    ELGK    + L+L  H 
Sbjct: 548 GFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHS 607

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRE--LMKEKGLKKD 437
           +V I   + ++Y+K       G +++  +M EK  K+D
Sbjct: 608 DVYIASTIVDMYSK------CGNMQDSRIMFEKAPKRD 639



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 165/334 (49%), Gaps = 23/334 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++S + +NG    +++ F+ M +  I  D       L A T ++D   G QV
Sbjct: 133 RDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQV 192

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                + G+ S V  G+AL+D+Y+    +  A  +F E+P +NSVC +A+++GY     +
Sbjct: 193 HCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRF 252

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GL+L ++M   G+     T ++  R+CAGLSA E G Q+HAY ++   N G D  + +
Sbjct: 253 TEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKT--NFGYDNIVGT 310

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           + ++MY KC  +  A +VFN   +      N  +V        Y R     E ++++ ++
Sbjct: 311 ATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIV-------GYARQDQVLEALEIFRSL 363

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLC 344
             +    DE++    ++ACS       GI+     +H   ++ G +   C    ++D+  
Sbjct: 364 QKSYLDFDEISLSGALTACSAIKGYLEGIQ-----LHGLAVKCGLDFNICVANTILDMYA 418

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + G L +A  + ++M  +   S     W A+++A
Sbjct: 419 KCGALMEACLIFDDMEIKDAVS-----WNAIIAA 447



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 130/300 (43%), Gaps = 55/300 (18%)

Query: 66  SPLYALKTFSFMHVHGI----FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
           +P YA+ + S   ++      F   +  CS+L A         GKQ  A +T +G++ +V
Sbjct: 20  TPPYAIHSISSNQMNPTKKLTFSHIFQKCSNLKAINP------GKQAHAQITVTGFVPTV 73

Query: 122 FVGSALIDLYAKLLLIHDA-------------------------------ELMFDEIPVK 150
           FV + L+  Y K L ++ A                               + +FD +P +
Sbjct: 74  FVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPER 133

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V  N++LS Y +       +E+   M  L + +D+ T + +L+AC G+     G QVH
Sbjct: 134 DVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVH 193

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
              I+      +DV   ++L++MY  C  +  A  +F     R       + V W++++ 
Sbjct: 194 CLAIQ--MGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPER-------NSVCWSAVIA 244

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y RN  F E +KLY+ ML  G    +  F +   +C+     +LG +     +H Y L+
Sbjct: 245 GYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQ-----LHAYALK 299



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 35/204 (17%)

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
            T S + + C+ L A   G+Q HA +          VF+ + L++ Y KC  +  A  VF
Sbjct: 39  LTFSHIFQKCSNLKAINPGKQAHAQI--TVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVF 96

Query: 248 NLAGHR------------------------LEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           +    R                         +    +DVV W SML  Y +NG+ ++ I+
Sbjct: 97  DKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIE 156

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCL 339
           ++  M +   + D   F  V+ AC+      LG++     VH   ++ G +      + L
Sbjct: 157 IFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQ-----VHCLAIQMGFDSDVVTGTAL 211

Query: 340 VDLLCRAGELDKAWKLINEMLDRG 363
           VD+     +LD A+ +  EM +R 
Sbjct: 212 VDMYSTCKKLDHAFNIFCEMPERN 235


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/411 (33%), Positives = 222/411 (54%), Gaps = 13/411 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G   +  +    RN + ++ +I+ + +NG    A+  FS MH  G     +     L A
Sbjct: 165 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 224

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
           S+ +     GKQ    + K G+   ++V SAL+D+YAK   I DA+  FD++   + V  
Sbjct: 225 SSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLW 284

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
            A++SG+ +       L L   M   G+     T+++ LRACAG++A E G+Q+H  +++
Sbjct: 285 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 344

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
               LG  V   S+L  MY KCG +   + VF     R+    ++DV+ W S++  + +N
Sbjct: 345 YGLGLGAPV--GSALSTMYSKCGNLEDGMSVF----RRIP---DRDVIAWNSIISGFSQN 395

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G     + L+E M M GT PD + F+ ++ ACSH G V  G EYF  M  DY L P  +H
Sbjct: 396 GCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDH 455

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
           Y+C+VD+L RAG L +A   I E +   HG+    +W  +L AC     F++G  A ++ 
Sbjct: 456 YACMVDILSRAGMLKEAKDFI-ESITIDHGT---CLWRIVLGACRSLRDFDVGAYAGERL 511

Query: 396 LELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +EL   +   Y++LSN+YA    W+++ ++R LM+ +G+ KD GCSW+E+ 
Sbjct: 512 MELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELN 562



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 139/304 (45%), Gaps = 21/304 (6%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            G+Q+   + K G L  V V ++L+ +YAK   +  A  +F+    +NS+  +A+++GY 
Sbjct: 132 MGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYA 191

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           +       + +   M A G     FT   +L A + L A   G+Q H  M++    LG +
Sbjct: 192 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVK----LGFE 247

Query: 224 V--FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           V  +++S+L++MY KCG +  A + F+            D+VLWT+M+  + +NG  +E 
Sbjct: 248 VQIYVKSALVDMYAKCGCIADAKEGFDQL-------YEVDIVLWTAMVSGHVQNGEHEEA 300

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           + LY  M   G  P +    + + AC+    ++ G +    +V  Y L  G    S L  
Sbjct: 301 LTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK-YGLGLGAPVGSALST 359

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELD 399
           +  + G L+    +   + DR      V  W +++S  + + CG   L      K     
Sbjct: 360 MYSKCGNLEDGMSVFRRIPDR-----DVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTI 414

Query: 400 PHNV 403
           P N+
Sbjct: 415 PDNI 418



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 135/275 (49%), Gaps = 26/275 (9%)

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           +S+V+V ++L+++Y KL ++ DA  +FD +P +NS   + +++GY   K      +L RL
Sbjct: 44  VSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRL 103

Query: 178 M----PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           M    P+   +   F  +A+L A +       G Q+H  +++    L + V +++SL+ M
Sbjct: 104 MLEECPS---EKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKD--GLLDFVSVENSLVTM 158

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G +  A  VF       E    ++ + W++M+  Y +NG     + ++  M   G 
Sbjct: 159 YAKAGCMGAAFHVF-------ESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGF 211

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDK 351
            P E  FV V++A S  G + +G +    MV   KL    + Y  S LVD+  + G +  
Sbjct: 212 TPTEFTFVGVLNASSDLGALAVGKQAHGLMV---KLGFEVQIYVKSALVDMYAKCGCIAD 268

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           A +  +++ +       + +W A++S     G+ E
Sbjct: 269 AKEGFDQLYE-----VDIVLWTAMVSGHVQNGEHE 298


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 141/395 (35%), Positives = 230/395 (58%), Gaps = 16/395 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I+ + +N  P+ A   F  M ++G   D   L S  +     +D +  + V   + 
Sbjct: 385 WNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIM 444

Query: 114 KSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
           + GWL   V +G+A++D+YAKL L+  A  +F+ IPVK+ +  N L++GY +  L +  +
Sbjct: 445 RRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAI 504

Query: 173 ELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           E+ ++M     +  +  T  ++L A A + A + G ++H  +I+   NL  DVF+ + LI
Sbjct: 505 EVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIK--TNLHLDVFVATCLI 562

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           ++YGKCG +  A+ +F    +++  E +   V W +++  +G +G+ ++ +KL+  ML  
Sbjct: 563 DVYGKCGRLVDAMSLF----YQVPQESS---VTWNAIISCHGIHGHAEKTLKLFGEMLDE 615

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G KPD V FV+++SACSH+G V+ G   F  M  +Y ++P  +HY C+VDLL RAG L+ 
Sbjct: 616 GVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEM 674

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
           A+  I +M  +       S+WGALL AC   G  ELGK A+ +  E+D  NVG YV+LSN
Sbjct: 675 AYDFIKDMPLQ----PDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSN 730

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +YA    W+ + ++R L +E+GLKK  G S IEV 
Sbjct: 731 IYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVN 765



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 161/368 (43%), Gaps = 42/368 (11%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS   +NG+   AL     M + GI ++   + S L     + D      +  +V 
Sbjct: 284 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVI 343

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G    +FV +ALI++YAK   + DA   F ++ + + V  N++++ Y +         
Sbjct: 344 KHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHG 403

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M   G   D  TL +L    A     +  R VH +++R+   L  DV + +++++M
Sbjct: 404 FFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGW-LMEDVVIGNAVVDM 462

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NG 292
           Y K GL+  A +VF +          KDV+ W +++  Y +NG   E I++Y+ M     
Sbjct: 463 YAKLGLLDSAHKVFEIIP-------VKDVISWNTLITGYAQNGLASEAIEVYKMMEECKE 515

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL--- 349
             P++  +V+++ A +H G ++ G++     V    L       +CL+D+  + G L   
Sbjct: 516 IIPNQGTWVSILPAYAHVGALQQGMK-IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDA 574

Query: 350 ----------------------------DKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
                                       +K  KL  EMLD G     V+ + +LLSAC  
Sbjct: 575 MSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT-FVSLLSACSH 633

Query: 382 CGKFELGK 389
            G  E GK
Sbjct: 634 SGFVEEGK 641



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 183/413 (44%), Gaps = 45/413 (10%)

Query: 35  NLG--TLTNC-LKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALC 90
           NLG  +L+ C    +  ++   +N +IS +  NG    A+  F   + V  I  D Y   
Sbjct: 163 NLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFP 222

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
             L A  ++ D   G+++     K G+  +VFV ++LI +Y++      A  +FD++P +
Sbjct: 223 PVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR 279

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           +    NA++SG  +    A  L+++  M   G+  +  T+ ++L  C  L        +H
Sbjct: 280 DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIH 339

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            Y+I+    L  D+F+ ++LI MY K G +  A + F       +     DVV W S++ 
Sbjct: 340 LYVIKH--GLEFDLFVSNALINMYAKFGNLEDARKAF-------QQMFITDVVSWNSIIA 390

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA------CSHTGQVKLGIEYFEWMV 324
            Y +N         +  M +NG +PD +  V++ S       C ++  V   I    W++
Sbjct: 391 AYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLM 450

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG- 383
            D  +       + +VD+  + G LD A K+   +  +      V  W  L++     G 
Sbjct: 451 EDVVIG------NAVVDMYAKLGLLDSAHKVFEIIPVK-----DVISWNTLITGYAQNGL 499

Query: 384 ---KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
                E+ K+  ++  E+ P N G +V +   YA       +G L++ MK  G
Sbjct: 500 ASEAIEVYKM-MEECKEIIP-NQGTWVSILPAYA------HVGALQQGMKIHG 544



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 130/280 (46%), Gaps = 27/280 (9%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           F K + A +  +G + S+F+ + L++LYA L  +  +   FD+IP K+    N+++S Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 164 EAKLWAGGLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
               +   +    +L+    +  D +T   +L+AC  L     GR++H +  +       
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFK--LGFQW 248

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +VF+ +SLI MY + G    A  +F+    R       D+  W +M+    +NG   + +
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFR-------DMGSWNAMISGLIQNGNAAQAL 301

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSC 338
            + + M + G K + V  V+++  C   G +   +     ++H Y ++ G E      + 
Sbjct: 302 DVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM-----LIHLYVIKHGLEFDLFVSNA 356

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           L+++  + G L+ A K   +M       + V  W ++++A
Sbjct: 357 LINMYAKFGNLEDARKAFQQMF-----ITDVVSWNSIIAA 391


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 139/403 (34%), Positives = 223/403 (55%), Gaps = 13/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            K +  R+ + +N VIS   +N     A   F  MH  GI  +   L + L +  +++  
Sbjct: 270 FKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQAN 329

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
              +Q+ A   KSG+    +V ++LID Y K   + DA  +F+E P+ + V   +L++ Y
Sbjct: 330 YMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAY 389

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       L L   M   G+  D F  S+LL ACA LSA E G+QVH ++++      +
Sbjct: 390 AQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK--FGFMS 447

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D+F  +SL+ MY KCG +  A   F+    R        +V W++M+G   ++GY KE +
Sbjct: 448 DIFAGNSLVNMYAKCGSIEDASCAFSRIPVR-------GIVSWSAMIGGLAQHGYGKEAL 500

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L++ ML  G  P+ +  V+V+ AC+H G V     YF  M   + +EP  EHY+C++DL
Sbjct: 501 QLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDL 560

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG+L+ A +L+N+M  +    ++  +WGALL A       +LG+ AA+  L L+P  
Sbjct: 561 LGRAGKLEAAMELVNKMPFQ----ANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEK 616

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G +V+L+N+YA   MWD++ ++R LMK+  +KK+ G SW+EV
Sbjct: 617 SGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEV 659



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 190/397 (47%), Gaps = 43/397 (10%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           L++ Y  C      G   +    +  R+ + +N + S +  +     A+  F  M + GI
Sbjct: 51  LVILYAKC---GGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGI 107

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             + ++L S +   T ++D+  G+++  ++ K G+ S  F  +AL+D+YAK+ ++ DA  
Sbjct: 108 RPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASS 167

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FDEI   + V  NA+++G    +     LEL+R M   G+  + FTLS+ L+ACAG++ 
Sbjct: 168 VFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMAL 227

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            E GRQ+H+ +I+   ++G+D F+   LI+MY KC  +  A  VF L   R       D+
Sbjct: 228 RELGRQLHSSLIK--MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPER-------DM 278

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTG 311
           + W +++  + +N   +E   L+  M   G   ++    TV+ + +           H  
Sbjct: 279 IAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHAL 338

Query: 312 QVKLGIEYFEWMVHD---------------YKLEPGP----EHYSCLVDLLCRAGELDKA 352
            +K G E+  ++V+                   E  P      ++ LV    + G+ ++A
Sbjct: 339 SLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEA 398

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
            +L  EM DRG    S  +  +LL+AC     +E GK
Sbjct: 399 LRLYLEMQDRGIKPDSF-VCSSLLNACASLSAYEQGK 434



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 149/304 (49%), Gaps = 21/304 (6%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           MH+ GI  + +A  S L A T  KD   GKQV   V  +G+ S  FV ++L+ LYAK   
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
             DA  +FD IP ++ V  NAL S Y  + +    + L   M   G+  + F+LS+++  
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C GL  +  GR++H Y+I+      +D F  ++L++MY K G++  A  VF+        
Sbjct: 121 CTGLEDSVQGRKIHGYLIK--LGYDSDAFSANALVDMYAKVGILEDASSVFD-------- 170

Query: 257 EINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
           EI K D+V W +++     + Y    ++L   M  +G  P+     + + AC+     +L
Sbjct: 171 EIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALREL 230

Query: 316 GIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           G +    ++   K++ G + +    L+D+  +   +D A  +   M +R      +  W 
Sbjct: 231 GRQLHSSLI---KMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPER-----DMIAWN 282

Query: 374 ALLS 377
           A++S
Sbjct: 283 AVIS 286


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 148/429 (34%), Positives = 232/429 (54%), Gaps = 19/429 (4%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM- 77
            QS L+  Y  C     +G         + ++ + +N +I+ + R G  L +   F  M 
Sbjct: 142 LQSSLLNFYMVC---GEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMV 198

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLL 136
            V  +  +   +   + A    K+ + G+ +  ++ K   L   V + +ALI+LY K   
Sbjct: 199 EVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGY 258

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A  +FDEIP KN+V  N+L+ GYC+       +EL+R M    L  D FT+S +L A
Sbjct: 259 LDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSA 318

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA + A   G  VH +  +K      DVF+ ++LI+MY KCG +  A +VF+    R   
Sbjct: 319 CAQMGAFNLGNWVHRFAEKKGIW---DVFIGTALIDMYAKCGFIGAARKVFDQMNER--- 372

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               +V  W ++L  Y  +G  +  I+L+  M  +G +PD + F+ V+ AC+H+G V+ G
Sbjct: 373 ----NVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENG 428

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            +YF+ M+  YK+ P  EHY C+VDLL RAG L +A +LI  M+       +V +WGALL
Sbjct: 429 KQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVE----PNVVVWGALL 484

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           SAC   G  E+G+ AA   ++L+  + G YV+L+NLYA    ++ +  +RE+M EKG+ K
Sbjct: 485 SACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICK 544

Query: 437 DVGCSWIEV 445
             GCS IE+
Sbjct: 545 SHGCSMIEI 553



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 159/339 (46%), Gaps = 25/339 (7%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHV-HGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +N +I  +  + +P  A+  ++ M     I  D Y       A  S      GK+V   +
Sbjct: 72  YNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVI 131

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
            + G+    F+ S+L++ Y     I +A+ +FDE   K+ V  NAL++GY    +     
Sbjct: 132 VRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSF 191

Query: 173 ELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
            + + M  +  +  +  T+  L+ AC      + GR +H YM++    L   V ++++LI
Sbjct: 192 GVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMV-LREGVKLEAALI 250

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
            +Y KCG +  A ++F+        EI  K+ V+W S++  Y + G   EVI+L   M +
Sbjct: 251 NLYVKCGYLDGARKLFD--------EIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHL 302

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY---SCLVDLLCRAG 347
           +  KPD      V+SAC+  G   LG     W VH +  + G       + L+D+  + G
Sbjct: 303 SNLKPDRFTVSGVLSACAQMGAFNLG----NW-VHRFAEKKGIWDVFIGTALIDMYAKCG 357

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            +  A K+ ++M +R     +V+ W A+LS     G+ E
Sbjct: 358 FIGAARKVFDQMNER-----NVATWNAILSGYASHGQAE 391


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 135/407 (33%), Positives = 224/407 (55%), Gaps = 43/407 (10%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           AL+ +S     GI  + ++    LT    +K+    +QV   +  +G+LS+V + S+++D
Sbjct: 176 ALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLD 235

Query: 130 LYAKLLLIHDAELMFDEI-------------------------------PVKNSVCANAL 158
            Y K  L+ DA  +FDE+                               P KN V   AL
Sbjct: 236 AYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTAL 295

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           +SGY    +    LEL   M    +  D FT S+ L ACA +++ + G+Q+HAY++R   
Sbjct: 296 ISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLR--I 353

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           N   +  + S+LI+MY KCG +    +VF+L G++L      DVVLW +++    ++G  
Sbjct: 354 NFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKL------DVVLWNTIISALAQHGCG 407

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           +E I++ + M+ +G KPD++ FV +++ACSH+G V+ G+ +FE M  DY + P  EHY+C
Sbjct: 408 EEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYAC 467

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           L+DLL RAG  ++    + + L++        +W ALL  C   G  ELG+ AA++ +EL
Sbjct: 468 LIDLLGRAGCFEE----VMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIEL 523

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +P +   YV+LS++YA    W+ + ++R+LM E+ +KK+   SW+E+
Sbjct: 524 EPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEI 570



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 177/428 (41%), Gaps = 74/428 (17%)

Query: 47  NPRNPL--PFNV-VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           NPR P   P  V  I   C+      A+ +   +   G+ LD+  L S L      +  R
Sbjct: 17  NPRKPRRRPCLVEAIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALR 76

Query: 104 FGKQVQAHVTKSGW-LSSVFVGSALIDLYAK----------------------------- 133
            GK+V  H+  +G      F+ + LI++YAK                             
Sbjct: 77  EGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGY 136

Query: 134 --LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191
             L +I  A  +FD++P K+ V  N ++  + +   W   L        LG+  + F+ +
Sbjct: 137 AKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFA 196

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN--- 248
            +L  C  L      RQVH  ++       ++V + SS+++ Y KCGL+  A ++F+   
Sbjct: 197 GVLTVCVKLKEVGLTRQVHGQIL--VAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMS 254

Query: 249 ----------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
                     ++G+   G++            K+ V WT+++  Y RNG   + ++L+  
Sbjct: 255 ARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTK 314

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M++   +PD+  F + + AC+    +K G +   +++     +P     S L+D+  + G
Sbjct: 315 MMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLR-INFQPNTIVVSALIDMYSKCG 373

Query: 348 EL---DKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHN 402
            L    K + L+   LD       V +W  ++SA   H CG+  +  L         P  
Sbjct: 374 SLGIGRKVFDLMGNKLD-------VVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDK 426

Query: 403 VGIYVMLS 410
           +   V+L+
Sbjct: 427 ITFVVILN 434



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 135/315 (42%), Gaps = 50/315 (15%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +NP+ +  +IS + RNG    AL+ F+ M +  +  D +   S L A  S+   + GKQ+
Sbjct: 287 KNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQI 346

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAKL 167
            A++ +  +  +  V SALID+Y+K   +     +FD +  K + V  N ++S   +   
Sbjct: 347 HAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGC 406

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               ++++  M   G   D  T   +L AC+           H+ ++++  N     F +
Sbjct: 407 GEEAIQMLDDMVRSGAKPDKITFVVILNACS-----------HSGLVQQGLN-----FFE 450

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S    M    G+V                        +  ++ + GR G F+EV+   E 
Sbjct: 451 S----MSCDYGIVPSQEH-------------------YACLIDLLGRAGCFEEVMDQLEK 487

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLL 343
           M     KPD+  +  ++  C   G ++LG +  E ++   +LEP         S +  +L
Sbjct: 488 M---PYKPDDRVWNALLGVCRIHGHIELGRKAAERLI---ELEPQSSTAYVLLSSIYAVL 541

Query: 344 CRAGELDKAWKLINE 358
            R   + K  +L+NE
Sbjct: 542 GRWESVQKVRQLMNE 556



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 112/266 (42%), Gaps = 44/266 (16%)

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND-VFMQSSLIEMYGKCGLV 240
           GL  D  TL++LL+ CA   A   G++VH ++  K   L     F+ + LI MY KCG  
Sbjct: 54  GLRLDSRTLASLLQHCADSRALREGKRVHLHL--KLTGLKRPGTFLSNHLINMYAKCGKE 111

Query: 241 TKALQVFN-------------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNG 276
            +A +VF+             L+G+   G I            KDVV W +M+  + + G
Sbjct: 112 VEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCG 171

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH- 335
           Y+ E ++ Y      G + +  +F  V++ C    +V L  +     VH   L  G    
Sbjct: 172 YWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQ-----VHGQILVAGFLSN 226

Query: 336 ---YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
               S ++D   + G +  A KL +EM  R      V  W  ++S     G     K A 
Sbjct: 227 VVLSSSVLDAYVKCGLMGDARKLFDEMSAR-----DVLAWTTMVSGYAKWGDM---KSAN 278

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCM 418
           +  +E+   N   +  L + YA+  M
Sbjct: 279 ELFVEMPEKNPVSWTALISGYARNGM 304


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 147/391 (37%), Positives = 220/391 (56%), Gaps = 13/391 (3%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS +  +G  + A+ TF ++   G+  ++  + S L A  +V   + GK++  H+ K  
Sbjct: 386 MISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKR 445

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
             + V VGSA+ D+YAK   +  A   F  +  ++SVC N+++S + +       ++L R
Sbjct: 446 LENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFR 505

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M   G  +D  +LS+ L A A L A  +G+++H Y+IR      +D F+ S+LI+MY K
Sbjct: 506 QMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNA--FSSDTFVASTLIDMYSK 563

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG +  A  VFNL    ++G   K+ V W S++  YG +G  +E + LY  ML  G  PD
Sbjct: 564 CGNLALAWCVFNL----MDG---KNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPD 616

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
            V F+ +ISAC H G V  GI YF  M  +Y +    EHY+C+VDL  RAG + +A+  I
Sbjct: 617 HVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTI 676

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
             M      +    +WG LL AC   G  EL KLA++  LELDP N G YV+LSN++A  
Sbjct: 677 KSM----PFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADA 732

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             W  + ++R LMKEKG++K  G SWI+V G
Sbjct: 733 GEWASVLKVRSLMKEKGVQKIPGYSWIDVNG 763



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 184/380 (48%), Gaps = 22/380 (5%)

Query: 37  GTLTNCLKFLN--PR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G L    K  N  P+ + + +N +I+ + +NG    A   F+ M   G+  D+    S L
Sbjct: 262 GNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFL 321

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE-IPVKNS 152
            +       R  K+V +++ +      V++ SALID+Y K   +  A  +F + I V  +
Sbjct: 322 PSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVA 381

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           VC  A++SGY    L    +   R +   G+  +  T++++L ACA ++A + G+++H +
Sbjct: 382 VC-TAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCH 440

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           +++K   L N V + S++ +MY KCG +  A + F     R+    ++D V W SM+  +
Sbjct: 441 ILKK--RLENIVNVGSAITDMYAKCGRLDLAYEFF----RRMS---DRDSVCWNSMISSF 491

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            +NG  +  I L+  M M+G K D V+  + +SA ++   +  G E   +++ +      
Sbjct: 492 SQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRN-AFSSD 550

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKL 390
               S L+D+  + G L  AW + N M     G + VS W ++++A   H C +  L   
Sbjct: 551 TFVASTLIDMYSKCGNLALAWCVFNLM----DGKNEVS-WNSIIAAYGNHGCPRECLDLY 605

Query: 391 AAQKALELDPHNVGIYVMLS 410
                  + P +V   V++S
Sbjct: 606 HEMLRAGIHPDHVTFLVIIS 625



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 155/358 (43%), Gaps = 15/358 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VH      G+  +C     SR++  Y  C   ++ G L   L+    R  LP+N +I  
Sbjct: 32  QVHTQVIVGGMGDVCAP--SSRVLGLYVLCGRFRDAGNLFFELEL---RYALPWNWMIRG 86

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
               G   +AL  +  M    +  D Y     + A   + +      V       G+   
Sbjct: 87  LYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVD 146

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +F GSALI LYA    I DA  +FDE+P+++++  N +L GY ++  +   +     M  
Sbjct: 147 LFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRT 206

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
                +  T + +L  CA       G Q+H  +I        D  + ++L+ MY KCG +
Sbjct: 207 SYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEF--DPQVANTLVAMYSKCGNL 264

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A ++FN            D V W  ++  Y +NG+  E   L+ AM+  G KPD V F
Sbjct: 265 LYARKLFNTMPQ-------TDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTF 317

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            + + +   +G ++   E   ++V  +++       S L+D+  + G+++ A K+  +
Sbjct: 318 ASFLPSILESGSLRHCKEVHSYIVR-HRVPFDVYLKSALIDVYFKGGDVEMARKIFQQ 374



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 7/228 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + ++ R+ + +N +IS F +NG P  A+  F  M + G   D+ +L S+L+A+ ++   
Sbjct: 473 FRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPAL 532

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
            +GK++  +V ++ + S  FV S LID+Y+K   +  A  +F+ +  KN V  N++++ Y
Sbjct: 533 YYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAY 592

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                    L+L   M   G+  DH T   ++ AC      + G      M R+   +G 
Sbjct: 593 GNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTRE-YGIGA 651

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            +   + ++++YG+ G V +A                 D  +W ++LG
Sbjct: 652 RMEHYACMVDLYGRAGRVHEAFDTIK------SMPFTPDAGVWGTLLG 693



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 110/274 (40%), Gaps = 10/274 (3%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           T  L S   A +     +  +QV   V   G        S ++ LY       DA  +F 
Sbjct: 11  TTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFF 70

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
           E+ ++ ++  N ++ G      +   L     M    +  D +T   +++AC GL+    
Sbjct: 71  ELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPL 130

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
              VH     +      D+F  S+LI++Y   G +  A +VF+    R       D +LW
Sbjct: 131 CMVVHD--TARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLR-------DTILW 181

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
             ML  Y ++G F   I  +  M  + +  + V +  ++S C+  G    G +    +V 
Sbjct: 182 NVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQ-LHGLVI 240

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
               E  P+  + LV +  + G L  A KL N M
Sbjct: 241 GSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTM 274



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 23/201 (11%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L +L RAC+  S  +  RQVH  +I     +G+     S ++ +Y  CG    A  +F  
Sbjct: 14  LESLFRACSDASMVQQARQVHTQVI--VGGMGDVCAPSSRVLGLYVLCGRFRDAGNLF-- 69

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                E E+ +  + W  M+      G+F   +  Y  ML +   PD+  F  VI AC  
Sbjct: 70  ----FELEL-RYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGG 124

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPE----HYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
              V L +     +VHD     G        S L+ L    G +  A ++ +E+  R   
Sbjct: 125 LNNVPLCM-----VVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLR--- 176

Query: 366 SSSVSMWGALLSACHDCGKFE 386
                +W  +L      G F+
Sbjct: 177 --DTILWNVMLRGYVKSGDFD 195


>gi|326504782|dbj|BAK06682.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 686

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 224/405 (55%), Gaps = 17/405 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +IS   ++GSPL AL+ F+ M    +  D   L + L A   + D    +  
Sbjct: 254 RDVVSWTSLISRLVQSGSPLQALRLFAAMMCCDVRPDFVLLVTVLKAYMELDDLPGAQSA 313

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSVCANALLSGYCEAK 166
            + V K G+     V + L  +YAK   I  A  +FD IP    N +  NA++SGY +  
Sbjct: 314 HSLVVKGGFDDEQDVVTTLTAMYAKFGCIVAARALFDRIPPPRVNVILWNAMISGYSKNG 373

Query: 167 LWAGGLELVRLMP--ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           L +  + L + M   A  +  D  TL +++ ACA L + E    +  Y+ R  C    DV
Sbjct: 374 LASEAVHLFKQMQVFARSMSPDSVTLRSVIMACAQLGSTELAVWMEDYVRRSECR--EDV 431

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + ++LI+MY K G +  A +VF     ++  +  +DVV+W++++  YG +G+  E + L
Sbjct: 432 LVNTALIDMYAKSGSIAHARRVFE----QMHAQ-ERDVVVWSALISGYGAHGHLAEAVGL 486

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +E M + G KP++V F+ ++SAC+H G V+ G  YF  M  D+K+EP  +HY+C+VDLL 
Sbjct: 487 FEDMKLAGVKPNDVTFLGLLSACNHAGAVEKGWFYFHSMKPDHKIEPRHQHYACVVDLLA 546

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHN 402
           RAG+LD+A++ I +M  +      +S+WGALL  C  H+     + + AAQ   EL+  N
Sbjct: 547 RAGQLDRAYRFILDMPIK----PEMSVWGALLHGCKMHEHSNMAMAERAAQHIFELEQSN 602

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            G YV L+N+YA   MW  +  +R  M+E+G+ K  GCS IEV G
Sbjct: 603 AGHYVQLANMYASAGMWSHVAGVRATMRERGVTKATGCSSIEVDG 647



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           GR  HA+ +R     G+  F+ +SLI MY  CG   +A +VF+  G R   +  +DVV W
Sbjct: 207 GRVAHAHGLR--LTDGDTRFLHNSLIPMYFSCGDAGRARRVFD--GMR---DCERDVVSW 259

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           TS++    ++G   + ++L+ AM+    +PD V  VTV+ A
Sbjct: 260 TSLISRLVQSGSPLQALRLFAAMMCCDVRPDFVLLVTVLKA 300


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 139/400 (34%), Positives = 225/400 (56%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I  F RNGS   A+  F  M   G+  +   + S L A+  V+D RFG+ V
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSV 226

Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
                ++G +   VF+GS+L+D+Y K     DA+ +FDE+P +N V   AL++GY +++ 
Sbjct: 227 HGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRC 286

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +  G+ +   M    +  +  TLS++L ACA + A   GR+VH YMI+    +       
Sbjct: 287 FDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTA--G 344

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI++Y KCG + +A+ VF     RL     K+V  WT+M+  +  +GY ++   L+  
Sbjct: 345 TTLIDLYVKCGCLEEAILVFE----RLH---EKNVYTWTAMINGFAAHGYARDAFDLFYT 397

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           ML +   P+EV F+ V+SAC+H G V+ G   F  M   + +E   +HY+C+VDL  R G
Sbjct: 398 MLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKG 457

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L++A  LI  M        +  +WGAL  +C     +ELGK AA + ++L P + G Y 
Sbjct: 458 LLEEAKALIERM----PMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYT 513

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +L+NLY++   WDE+ ++R+ MK++ + K  G SWIEV G
Sbjct: 514 LLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKG 553



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 155/339 (45%), Gaps = 17/339 (5%)

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           +  M  +G+    +     L A   ++D+    Q  AH+ K G  S  FV ++LI  Y+ 
Sbjct: 92  YRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSS 150

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
             L   A  +FD    K+ V   A++ G+      +  +     M   G+  +  T+ ++
Sbjct: 151 SGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSV 210

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L+A   +    FGR VH   + +   +  DVF+ SSL++MYGKC     A +VF+    R
Sbjct: 211 LKAAGKVEDVRFGRSVHGLYL-ETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSR 269

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  +VV WT+++  Y ++  F + + ++E ML +   P+E    +V+SAC+H G +
Sbjct: 270 -------NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGAL 322

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G     +M+ +  +E      + L+DL  + G L++A  +   + ++     +V  W 
Sbjct: 323 HRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEK-----NVYTWT 376

Query: 374 ALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           A+++  A H   +          +  + P+ V    +LS
Sbjct: 377 AMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLS 415


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 140/426 (32%), Positives = 233/426 (54%), Gaps = 16/426 (3%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S L+  Y  CR  +    L +  + ++    +  + VIS +  NG    AL+ F ++   
Sbjct: 382 SALVDIYFKCRDVRTARNLYDAARAIDV---VIGSTVISGYVLNGMSEKALQMFRYLLEQ 438

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
            I  +   + S L A  S+     G+++  +V ++ +    +V SAL+D+YAK   +  +
Sbjct: 439 CIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLS 498

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +F ++ +K+ V  N+++S + +       L+L R M   G+ Y++ T+S+ L ACA L
Sbjct: 499 HYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASL 558

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
            A  +G+++H  +I+    +  D+F +S+LI+MY KCG +  AL+VF       E   +K
Sbjct: 559 PAIYYGKEIHGVIIKG--PIKADIFAESALIDMYAKCGNMELALRVF-------EFMPDK 609

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           + V W S++  YG +G  KE +     M   G KPD V F+ +ISAC+H G V+ G++ F
Sbjct: 610 NEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLF 669

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           + M  +Y + P  EH++C+VDL  R+G LDKA + I +M  +        +WGALL AC 
Sbjct: 670 QCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFK----PDAGIWGALLHACR 725

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
                EL  +A+Q+  +LDP N G YV++SN+ A    WD + ++R LMK+  + K  G 
Sbjct: 726 VHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGY 785

Query: 441 SWIEVT 446
           SW++V 
Sbjct: 786 SWVDVN 791



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 144/312 (46%), Gaps = 11/312 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +   +RL+  Y   R  ++   + + L      + LP+N +I  F   G    A+  +  
Sbjct: 70  LALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVK 129

Query: 77  MHVH--GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
           M  H      D + L   + +  ++     G+ V      +G  S V+VGSALI +Y+  
Sbjct: 130 MWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDA 189

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
            L+ DA   FD +P ++ V  N ++ GY +A    G + L R M   G + +  TL+  L
Sbjct: 190 GLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFL 249

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
             CA  +    G Q+H+  ++  C L  +V + ++L+ MY KC  +  A ++F L     
Sbjct: 250 SVCAAEADLLSGVQLHSLAVK--CGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPR-- 305

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                 D+V W  M+    +NG   E + L+  ML +G +PD V  V+++ A +    +K
Sbjct: 306 -----DDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLK 360

Query: 315 LGIEYFEWMVHD 326
            G E   +++ +
Sbjct: 361 QGKEVHGYIIRN 372



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 152/315 (48%), Gaps = 18/315 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +NV++  + + G    A++ F  M V G   +   L   L+   +  D   G Q+
Sbjct: 205 RDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQL 264

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +   K G    V V + L+ +YAK   + DA  +F+ +P  + V  N ++SG  +  L 
Sbjct: 265 HSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLL 324

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M   G   D  TL +LL A   L+  + G++VH Y+IR C ++  D F+ S
Sbjct: 325 DEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHM--DAFLVS 382

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+++Y KC  V  A  +++ A          DVV+ ++++  Y  NG  ++ ++++  +
Sbjct: 383 ALVDIYFKCRDVRTARNLYDAAR-------AIDVVIGSTVISGYVLNGMSEKALQMFRYL 435

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
           L    KP+ V   +V+ AC+    + LG E     +H Y L    E      S L+D+  
Sbjct: 436 LEQCIKPNAVTVASVLPACASISALPLGQE-----IHGYVLRNAYEGKCYVESALMDMYA 490

Query: 345 RAGELDKAWKLINEM 359
           + G LD +  + ++M
Sbjct: 491 KCGRLDLSHYIFSKM 505


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 132/400 (33%), Positives = 225/400 (56%), Gaps = 15/400 (3%)

Query: 50  NP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           NP  + +N ++S F  + +     + F  M + G   + +   S L + +S+ D  FGKQ
Sbjct: 215 NPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQ 274

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V AH+ K+      FVG+AL+D+YAK   + DA + FD +  ++      ++SGY +   
Sbjct: 275 VHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQ 334

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               ++  R M   G+  + +TL++ L  C+ ++  E GRQ+HA  + K  + G D+F+ 
Sbjct: 335 AEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAV-KAGHFG-DIFVG 392

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+L+++YGKCG +  A  +F       +G I++D+V W +++  Y ++G  ++ ++ +  
Sbjct: 393 SALVDLYGKCGCMEHAEAIF-------KGLISRDIVSWNTIISGYSQHGQGEKALEAFRM 445

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           ML  G  PDE  F+ V+SACS  G V+ G + F+ M   Y + P  EHY+C+VD+L RAG
Sbjct: 446 MLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAG 505

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           + ++    I EM    + +    +W  +L AC   G  + G+ AA+K  E++P     Y+
Sbjct: 506 KFNEVKIFIEEM----NLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYI 561

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN++A    WD++  +R LM  +G+KK+ GCSW+EV G
Sbjct: 562 LLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDG 601



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 182/370 (49%), Gaps = 37/370 (10%)

Query: 37  GTLTNCLK-FLNPRNP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           GT+ + LK F   RNP  + ++ +I+   + G    A + F  M   G   + + L S +
Sbjct: 100 GTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLV 159

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           + +T++ D R+G+ +   + K G+ S   V + LI +Y K   + D   +F+ +   + V
Sbjct: 160 STATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLV 219

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             NALLSG+ +++    G  +   M   G   + FT  ++LR+C+ L   EFG+QVHA++
Sbjct: 220 SWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHI 279

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           I+   +  +D F+ ++L++MY K     + L+   +A  RL   +N+D+  WT ++  Y 
Sbjct: 280 IKNSSD--DDDFVGTALVDMYAK----ARCLEDAGVAFDRL---VNRDIFSWTVIISGYA 330

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           +    ++ +K +  M   G KP+E    + +S CSH   ++ G +     +H   ++ G 
Sbjct: 331 QTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQ-----LHAVAVKAG- 384

Query: 334 EHY------SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
            H+      S LVDL  + G ++ A     E + +G  S  +  W  ++S     G+   
Sbjct: 385 -HFGDIFVGSALVDLYGKCGCMEHA-----EAIFKGLISRDIVSWNTIISGYSQHGQ--- 435

Query: 388 GKLAAQKALE 397
                +KALE
Sbjct: 436 ----GEKALE 441



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 119/248 (47%), Gaps = 18/248 (7%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           AE +F  +P KN V  NALL+GY +       L+L   M      +  FTLS +L+ CA 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
             +   G+ +HA  +R  C +  D F+  SL++MY KCG V  AL+VF           N
Sbjct: 64  TGSLREGKVLHALALRSGCEI--DEFLGCSLVDMYSKCGTVYDALKVFTKIR-------N 114

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
            DVV W++M+    + G+ +E  +L+  M   G +P++    +++S  ++ G ++ G + 
Sbjct: 115 PDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG-QS 173

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
               +  Y  E      + L+ +  ++  ++   K+   M +       +  W ALLS  
Sbjct: 174 IHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTN-----PDLVSWNALLSGF 228

Query: 380 HD---CGK 384
           +D   CG+
Sbjct: 229 YDSQTCGR 236



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 132/316 (41%), Gaps = 46/316 (14%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   + V+IS + +      A+K F  M   GI  + Y L S L+  + +     G+Q+
Sbjct: 317 RDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL 376

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K+G    +FVGSAL+DLY K   +  AE +F  +  ++ V  N ++SGY +    
Sbjct: 377 HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQG 436

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LE  R+M + G+  D  T   +L AC+ +   E G++                    
Sbjct: 437 EKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRF-----------------D 479

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           S+ ++YG                      IN  +  +  M+ + GR G F EV    E M
Sbjct: 480 SMSKIYG----------------------INPSIEHYACMVDILGRAGKFNEVKIFIEEM 517

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSCLVDLLCRAG 347
            +    P  + + TV+ AC   G V  G +  + +   +++EP  +  Y  L ++    G
Sbjct: 518 NLT---PYSLIWETVLGACKLHGNVDFGEKAAKKL---FEMEPMMDSSYILLSNIFASKG 571

Query: 348 ELDKAWKLINEMLDRG 363
             D    +   M  RG
Sbjct: 572 RWDDVRNIRALMTSRG 587



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 142/318 (44%), Gaps = 18/318 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +N +++ + + G     LK F  M         + L + L    +    R GK +
Sbjct: 14  KNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVL 73

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   +SG     F+G +L+D+Y+K   ++DA  +F +I   + V  +A+++G  +    
Sbjct: 74  HALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHG 133

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFM 226
               EL  LM   G   + FTLS+L+     +    +G+ +H  +    C  G  +D  +
Sbjct: 134 QEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI----CKYGFESDNLV 189

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            + LI MY K   V    +VF       E   N D+V W ++L  +  +       +++ 
Sbjct: 190 SNPLIMMYMKSRCVEDGNKVF-------EAMTNPDLVSWNALLSGFYDSQTCGRGPRIFY 242

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLC 344
            ML+ G KP+   F++V+ +CS     + G +      H  K     + +  + LVD+  
Sbjct: 243 QMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVH---AHIIKNSSDDDDFVGTALVDMYA 299

Query: 345 RAGELDKAWKLINEMLDR 362
           +A  L+ A    + +++R
Sbjct: 300 KARCLEDAGVAFDRLVNR 317



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 14/139 (10%)

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           LA     G   K+ V W ++L  Y + G  K+V+KL+  M    TK  +    TV+  C+
Sbjct: 3   LAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCA 62

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPG---PEHYSC-LVDLLCRAGELDKAWKLINEMLDRGH 364
           +TG ++ G      ++H   L  G    E   C LVD+  + G +  A K+  ++ +   
Sbjct: 63  NTGSLREGK-----VLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRN--- 114

Query: 365 GSSSVSMWGALLSACHDCG 383
               V  W A+++     G
Sbjct: 115 --PDVVAWSAMITGLDQQG 131


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 138/411 (33%), Positives = 222/411 (54%), Gaps = 13/411 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G   +  +    RN + ++ +I+ + +NG    A+  FS MH  G     +     L A
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 330

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
           S+ +     GKQ    + K G+   ++V SAL+D+YAK   I DA+  FD++   + V  
Sbjct: 331 SSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLW 390

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
            A++SG+ +       L L   M   G+     T+++ LRACAG++A E G+Q+H  +++
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 450

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
               LG  V   S+L  MY KCG +   + VF     R+    ++DV+ W S++  + +N
Sbjct: 451 YGLGLGAPV--GSALSTMYSKCGNLEDGMSVFR----RIP---DRDVIAWNSIISGFSQN 501

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G     + L+E M M GT PD + F+ ++ ACSH G V  G EYF  M  DY L P  +H
Sbjct: 502 GCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDH 561

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
           Y+C+VD+L RAG L +A   I E +   HG+    +W  +L AC     F++G  A ++ 
Sbjct: 562 YACMVDILSRAGMLKEAKDFI-ESITIDHGT---CLWRIVLGACRSLRDFDVGAYAGERL 617

Query: 396 LELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +EL   +   Y++LSN+YA    W+++ ++R LM+ +G+ KD GCSW+E+ 
Sbjct: 618 MELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELN 668



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 139/304 (45%), Gaps = 21/304 (6%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            G+Q+   + K G L  V V ++L+ +YAK   +  A  +F+    +NS+  +A+++GY 
Sbjct: 238 MGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYA 297

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           +       + +   M A G     FT   +L A + L A   G+Q H  M++    LG +
Sbjct: 298 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVK----LGFE 353

Query: 224 V--FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           V  +++S+L++MY KCG +  A + F+            D+VLWT+M+  + +NG  +E 
Sbjct: 354 VQIYVKSALVDMYAKCGCIADAKEGFDQL-------YEVDIVLWTAMVSGHVQNGEHEEA 406

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           + LY  M   G  P +    + + AC+    ++ G +    +V  Y L  G    S L  
Sbjct: 407 LTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIV-KYGLGLGAPVGSALST 465

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELD 399
           +  + G L+    +   + DR      V  W +++S  + + CG   L      K     
Sbjct: 466 MYSKCGNLEDGMSVFRRIPDR-----DVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTI 520

Query: 400 PHNV 403
           P N+
Sbjct: 521 PDNI 524



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 135/275 (49%), Gaps = 26/275 (9%)

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           +S+V+V ++L+++Y KL ++ DA  +FD +P +NS   + +++GY   K      +L RL
Sbjct: 150 VSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRL 209

Query: 178 M----PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           M    P+   +   F  +A+L A +       G Q+H  +++    L + V +++SL+ M
Sbjct: 210 MLEECPS---EKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKD--GLLDFVSVENSLVTM 264

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G +  A  VF       E    ++ + W++M+  Y +NG     + ++  M   G 
Sbjct: 265 YAKAGCMGAAFHVF-------ESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGF 317

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDK 351
            P E  FV V++A S  G + +G +    MV   KL    + Y  S LVD+  + G +  
Sbjct: 318 TPTEFTFVGVLNASSDLGALAVGKQAHGLMV---KLGFEVQIYVKSALVDMYAKCGCIAD 374

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           A +  +++ +       + +W A++S     G+ E
Sbjct: 375 AKEGFDQLYE-----VDIVLWTAMVSGHVQNGEHE 404


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 154/467 (32%), Positives = 251/467 (53%), Gaps = 41/467 (8%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHAH  +T  L    +  ++RL++ YT C    +LG   N    +  RN + +  +IS +
Sbjct: 265 VHAHMIKTRYL--PSVFLRTRLIVLYTKC---DSLGDAHNVFDEMPERNVVSWTAMISAY 319

Query: 62  CRNGSPLYALKTF------SFMHVHGI---------------FLDTYALCSSLTASTSVK 100
            + G    AL  F      S   V+ I                 + +   + LT+ TS  
Sbjct: 320 SQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSL 379

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
               G+Q+ + + K  +   VFVGS+L+D+YAK   IH+A  +F+ +P ++ V   A++S
Sbjct: 380 GFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIIS 439

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY +  L    LEL R +   G+  ++ T + +L A +GL+A + G+QVH +++R    +
Sbjct: 440 GYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRS--EI 497

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            + V +Q+SLI+MY KCG +T + ++F+    R        V+ W +ML  Y ++G  +E
Sbjct: 498 PSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERT-------VISWNAMLVGYSKHGEGRE 550

Query: 281 VIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSC 338
           V+KL+  M      KPD V  + V+S CSH G    G+  F  M     ++EP  EHY C
Sbjct: 551 VLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGC 610

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +VDLL R+G +++A++ I +M        + ++WG+LL AC      ++G+ A Q+ LE+
Sbjct: 611 VVDLLGRSGRVEEAFEFIKKM----PFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEI 666

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +P N G YV+LSNLYA    W+++  LR+LM +K + K+ G S IE+
Sbjct: 667 EPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIEL 713



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 168/362 (46%), Gaps = 47/362 (12%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M +HG  +      + L    + +  R G++V AH+ K+ +L SVF+ + LI LY K   
Sbjct: 234 MALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDS 293

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL------VRLMPALGLDY----- 185
           + DA  +FDE+P +N V   A++S Y +    +  L L      + L     +D      
Sbjct: 294 LGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSN 353

Query: 186 ----------DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
                     + FT + +L +C        GRQ+H+ +I+   N  + VF+ SSL++MY 
Sbjct: 354 PNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIK--LNYEDHVFVGSSLLDMYA 411

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           K G + +A  VF     R       DVV  T+++  Y + G  +E ++L+  +   G K 
Sbjct: 412 KDGKIHEARTVFECLPER-------DVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKS 464

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDK 351
           + V +  V++A S    + LG +     VH++ L      +    + L+D+  + G L  
Sbjct: 465 NYVTYTGVLTALSGLAALDLGKQ-----VHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTY 519

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGK-FELGKLAA--QKALELDPHNVGIYVM 408
           + ++ + M +R     +V  W A+L      G+  E+ KL    ++  ++ P +V I  +
Sbjct: 520 SRRIFDTMYER-----TVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAV 574

Query: 409 LS 410
           LS
Sbjct: 575 LS 576


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  241 bits (616), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 147/402 (36%), Positives = 220/402 (54%), Gaps = 14/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R  + +  +IS + +NG P+ AL  F  M    +  D  AL S +TA T+V+D   G
Sbjct: 146 LHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG 205

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K +   VTK G      +  +L  +YAK  L+  A   F+ +   N +  NA++SGY   
Sbjct: 206 KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANN 265

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 ++L R M    +  D  T+ + + A A + + E  R +  Y+ +      +D F
Sbjct: 266 GYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKS--EYRDDTF 323

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + + LI+MY KCG +  A  VF+          +KDVVLW+ M+  YG +G+ +E I LY
Sbjct: 324 VNTGLIDMYAKCGSIYLARCVFDRVA-------DKDVVLWSVMIMGYGLHGHGQEAICLY 376

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M   G  P++  F+ +++AC ++G VK G E F  M  D+ +EP  +HYSC+VDLL R
Sbjct: 377 NEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGR 435

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L++A+  I  M  +      VS+WGALLSAC    K  LG++AA++   LDP+N G 
Sbjct: 436 AGYLNQAYDFIMSMPIK----PGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGH 491

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           YV LSNLYA   +W  +  +R +M +KGL KD+G S IE+ G
Sbjct: 492 YVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEING 533



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 168/390 (43%), Gaps = 29/390 (7%)

Query: 23  LMLPY-TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG 81
           LM+ +   C H  ++       + ++  + L +N +I  + +       ++ +  M +  
Sbjct: 21  LMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQ 80

Query: 82  IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE 141
           +  + +     L A         GKQ+     K G+ S+VFV ++L+ +YAK   I  A 
Sbjct: 81  VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYAR 140

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
           ++FD++  +  V   +++SGY +       L + + M    +  D   L +++ A   + 
Sbjct: 141 IVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVE 200

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
               G+ +H  + +       D+ +  SL  MY K GLV  A   FN    R+E     +
Sbjct: 201 DLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARFFFN----RME---KPN 251

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           ++LW +M+  Y  NGY +E IKL+  M+    + D +   + + A +  G ++L   + +
Sbjct: 252 LILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELA-RWLD 310

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR---------------GHGS 366
             +   +        + L+D+  + G +  A  + + + D+               GHG 
Sbjct: 311 GYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQ 370

Query: 367 SSVSMWGALLSA--CHDCGKFELGKLAAQK 394
            ++ ++  +  A  C + G F +G L A K
Sbjct: 371 EAICLYNEMKQAGVCPNDGTF-IGLLTACK 399


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/406 (33%), Positives = 222/406 (54%), Gaps = 15/406 (3%)

Query: 42  CLKF--LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           CL F  +  R+ + +N +I+   +N   +  L  F  M    +  D +   S + A    
Sbjct: 395 CLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQ 454

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           +   +G ++   + KSG     FVGSAL+D+Y K  ++ +AE +   +  K +V  N+++
Sbjct: 455 QALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSII 514

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           SG+   K           M  +G+  D++T + +L  CA ++  E G+Q+HA +++    
Sbjct: 515 SGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILK--LQ 572

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L +DV++ S+L++MY KCG +  +  +F  A  R       D V W++M+  Y  +G  +
Sbjct: 573 LHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKR-------DYVTWSAMICAYAYHGLGE 625

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           + I L+E M +   KP+   F++V+ AC+H G V  G+ YF+ M+  Y L+P  EHYSC+
Sbjct: 626 KAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCM 685

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL R+G++++A KLI  M       +   +W  LLS C   G  E+ + A    L+LD
Sbjct: 686 VDLLGRSGQVNEALKLIESM----PFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLD 741

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           P +   YV+L+N+YA   MW E+ ++R +MK   LKK+ GCSWIEV
Sbjct: 742 PQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEV 787



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 177/366 (48%), Gaps = 24/366 (6%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           PR    +N +I  + R    L AL  F  +  + +  D  +L  +LTA + +K    G Q
Sbjct: 304 PRQS--YNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQ 361

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +     K G   ++ V + ++D+Y K   + +A L+F+E+  +++V  NA+++ + + + 
Sbjct: 362 LHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEE 421

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               L L   M    ++ D FT  ++++ACAG  A  +G ++H  +I+    +G D F+ 
Sbjct: 422 IVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKS--GMGLDWFVG 479

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+L++MYGKCG++ +A ++      RLE    K  V W S++  +      +   + +  
Sbjct: 480 SALVDMYGKCGMLMEAEKIHA----RLE---EKTTVSWNSIISGFSSQKQSENAQRYFSQ 532

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCR 345
           ML  G  PD   + TV+  C++   ++LG +    ++   KL+   + Y  S LVD+  +
Sbjct: 533 MLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQIL---KLQLHSDVYIASTLVDMYSK 589

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDP-HN 402
            G +  +  +  +   R + +     W A++   A H  G+  +      + L + P H 
Sbjct: 590 CGNMQDSRLMFEKAPKRDYVT-----WSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHT 644

Query: 403 VGIYVM 408
           + I V+
Sbjct: 645 IFISVL 650



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/454 (22%), Positives = 197/454 (43%), Gaps = 52/454 (11%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++  S L+  Y+ C   K L       + +  RN + ++ VI+ + +N   +  LK F  
Sbjct: 173 VVTGSALVDMYSKC---KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKD 229

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+ +      S   +   +   + G Q+  H  KS +     +G+A +D+YAK   
Sbjct: 230 MLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCER 289

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DA  +F+ +P       NA++ GY         L++ + +    L +D  +LS  L A
Sbjct: 290 MFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTA 349

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+ +     G Q+H   ++  C LG ++ + +++++MYGKCG + +A  +F     R   
Sbjct: 350 CSVIKRHLEGIQLHGLAVK--CGLGFNICVANTILDMYGKCGALMEACLIFEEMERR--- 404

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               D V W +++  + +N    + + L+ +ML +  +PD+  + +V+ AC+    +  G
Sbjct: 405 ----DAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYG 460

Query: 317 IEY----------FEWMV--------------------HDYKLEPGPEHYSCLVDLLCRA 346
            E            +W V                    H    E     ++ ++      
Sbjct: 461 TEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQ 520

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH-NVGI 405
            + + A +  ++ML+ G    + + +  +L  C +    ELGK    + L+L  H +V I
Sbjct: 521 KQSENAQRYFSQMLEMGIIPDNYT-YATVLDVCANMATIELGKQIHAQILKLQLHSDVYI 579

Query: 406 YVMLSNLYAKFCMWDEIGQLRE--LMKEKGLKKD 437
              L ++Y+K       G +++  LM EK  K+D
Sbjct: 580 ASTLVDMYSK------CGNMQDSRLMFEKAPKRD 607



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 167/348 (47%), Gaps = 23/348 (6%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           N+G   +    +  R+ + +N ++S +  NG    +++ F  M    I  D       L 
Sbjct: 87  NMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILK 146

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A + ++D   G QV     + G+ + V  GSAL+D+Y+K   + DA  +F E+P +N VC
Sbjct: 147 ACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVC 206

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            +A+++GY +   +  GL+L + M  +G+     T +++ R+CAGLSA + G Q+H + +
Sbjct: 207 WSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHAL 266

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           +   +   D  + ++ ++MY KC  +  A +VFN   +      N  +V        Y R
Sbjct: 267 KS--DFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIV-------GYAR 317

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
                + + +++++  N    DE++    ++ACS   +   GI+     +H   ++ G  
Sbjct: 318 QDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQ-----LHGLAVKCGLG 372

Query: 335 HYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
              C    ++D+  + G L +A  +  EM  R   S     W A+++A
Sbjct: 373 FNICVANTILDMYGKCGALMEACLIFEEMERRDAVS-----WNAIIAA 415



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 137/302 (45%), Gaps = 49/302 (16%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK------LLLIHD------- 139
           L   +++K    GKQV   +  +G++ +++V + L+  Y K         + D       
Sbjct: 13  LQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRDV 72

Query: 140 ------------------AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
                             A+ +FD +P ++ V  N+LLS Y    +    +E+   M +L
Sbjct: 73  ISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSL 132

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            + +D+ T + +L+AC+G+     G QVH   I+      NDV   S+L++MY KC  + 
Sbjct: 133 KIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQ--MGFENDVVTGSALVDMYSKCKKLD 190

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A +VF     R       ++V W++++  Y +N  F E +KL++ ML  G    +  + 
Sbjct: 191 DAFRVFREMPER-------NLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYA 243

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL----VDLLCRAGELDKAWKLIN 357
           +V  +C+     KLG +     +H + L+    + S +    +D+  +   +  AWK+ N
Sbjct: 244 SVFRSCAGLSAFKLGTQ-----LHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFN 298

Query: 358 EM 359
            +
Sbjct: 299 TL 300



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 35/203 (17%)

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
            T S +L+ C+ L A   G+QVH  MI         +++ + L++ Y K   +  A +VF
Sbjct: 7   LTFSHILQKCSNLKALNPGKQVHTQMI--VTGFVPTIYVANCLLQFYCKSSKMNYAFKVF 64

Query: 248 NLAGHR------------------------LEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           +    R                         +    +DVV W S+L  Y  NG  ++ I+
Sbjct: 65  DRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIE 124

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCL 339
           ++  M       D   F  ++ ACS      LG++     VH   ++ G E+     S L
Sbjct: 125 IFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQ-----VHCLAIQMGFENDVVTGSAL 179

Query: 340 VDLLCRAGELDKAWKLINEMLDR 362
           VD+  +  +LD A+++  EM +R
Sbjct: 180 VDMYSKCKKLDDAFRVFREMPER 202


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  241 bits (615), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 147/402 (36%), Positives = 220/402 (54%), Gaps = 14/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R  + +  +IS + +NG P+ AL  F  M    +  D  AL S +TA T+V+D   G
Sbjct: 161 LHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG 220

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K +   VTK G      +  +L  +YAK  L+  A   F+ +   N +  NA++SGY   
Sbjct: 221 KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANN 280

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 ++L R M    +  D  T+ + + A A + + E  R +  Y+ +      +D F
Sbjct: 281 GYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKS--EYRDDTF 338

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + + LI+MY KCG +  A  VF+          +KDVVLW+ M+  YG +G+ +E I LY
Sbjct: 339 VNTGLIDMYAKCGSIYLARCVFDRVA-------DKDVVLWSVMIMGYGLHGHGQEAICLY 391

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M   G  P++  F+ +++AC ++G VK G E F  M  D+ +EP  +HYSC+VDLL R
Sbjct: 392 NEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGR 450

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L++A+  I  M  +      VS+WGALLSAC    K  LG++AA++   LDP+N G 
Sbjct: 451 AGYLNQAYDFIMSMPIK----PGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGH 506

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           YV LSNLYA   +W  +  +R +M +KGL KD+G S IE+ G
Sbjct: 507 YVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEING 548



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 168/390 (43%), Gaps = 29/390 (7%)

Query: 23  LMLPY-TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG 81
           LM+ +   C H  ++       + ++  + L +N +I  + +       ++ +  M +  
Sbjct: 36  LMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQ 95

Query: 82  IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE 141
           +  + +     L A         GKQ+     K G+ S+VFV ++L+ +YAK   I  A 
Sbjct: 96  VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYAR 155

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
           ++FD++  +  V   +++SGY +       L + + M    +  D   L +++ A   + 
Sbjct: 156 IVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVE 215

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
               G+ +H  + +       D+ +  SL  MY K GLV  A   FN    R+E     +
Sbjct: 216 DLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARFFFN----RME---KPN 266

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           ++LW +M+  Y  NGY +E IKL+  M+    + D +   + + A +  G ++L   + +
Sbjct: 267 LILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELA-RWLD 325

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR---------------GHGS 366
             +   +        + L+D+  + G +  A  + + + D+               GHG 
Sbjct: 326 GYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQ 385

Query: 367 SSVSMWGALLSA--CHDCGKFELGKLAAQK 394
            ++ ++  +  A  C + G F +G L A K
Sbjct: 386 EAICLYNEMKQAGVCPNDGTF-IGLLTACK 414


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  241 bits (615), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 219/365 (60%), Gaps = 15/365 (4%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           F  TY L + + +  +      GK++ AH+T+ G+ S V++ + L+D+YA+   +  A  
Sbjct: 179 FTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASY 238

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGL 200
           +F+ +PV+N V  +A+++ Y +       L   R M     D   +  T+ ++L+ACA L
Sbjct: 239 VFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASL 298

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
           +A E GR +H Y++R+   L + + + S+L+ MYG+CG +    +VF+    R+    ++
Sbjct: 299 AALEQGRLIHGYILRR--GLDSILPVISALVTMYGRCGKLDVGQRVFD----RMH---DR 349

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           DVV W S++  YG +GY ++ I+++E ML NG  P  V FV+V+ ACSH G V+ G   F
Sbjct: 350 DVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLF 409

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           E M  D+ ++P  EHY+C+VDLL RA  LD+A K++ +M           +WG+LL +C 
Sbjct: 410 ESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDM----RTEPGPKVWGSLLGSCR 465

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
             G  EL + A+++   L+P N G YV+L+++YA+  MWDE+ ++++L++ +GL+K  G 
Sbjct: 466 IHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525

Query: 441 SWIEV 445
            W+EV
Sbjct: 526 CWMEV 530



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 155/337 (45%), Gaps = 39/337 (11%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYAL---CSSLTASTSVKDARFGKQVQAH 111
           N +I   C+ G    AL+  S          TY L   C    +S S      G +V  H
Sbjct: 50  NQLIQSLCKEGKLKQALRVLS--QESSPSQQTYELLILCCGHRSSLSD-----GLRVHRH 102

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           +  +G     F+ + LI +Y+ L  +  A  +FD+   +     NAL      A      
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 172 LELVRLMPALGLDYDHFTLSALLRAC-AGLSAAEF---GRQVHAYMIRKCCNLGNDVFMQ 227
           L L   M  +G++ D FT + +L+AC A    A+    G+++HA++ R+  N  + V++ 
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYN--SHVYIM 220

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L++MY + G V  A  VFN       G   ++VV W++M+  Y +NG   E ++ +  
Sbjct: 221 TTLVDMYARFGCVDYASYVFN-------GMPVRNVVSWSAMIACYAKNGKAFEALRTFRE 273

Query: 288 ML--MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVD 341
           M+     + P+ V  V+V+ AC+    ++ G      ++H Y L  G +      S LV 
Sbjct: 274 MMTETKDSSPNSVTMVSVLQACASLAALEQG-----RLIHGYILRRGLDSILPVISALVT 328

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +  R G+LD   ++ + M DR      V  W +L+S+
Sbjct: 329 MYGRCGKLDVGQRVFDRMHDR-----DVVSWNSLISS 360



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 2/169 (1%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYALCSSLTASTSVKDARFGK 106
           RN + ++ +I+ + +NG    AL+TF  M         ++  + S L A  S+     G+
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGR 305

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +  ++ + G  S + V SAL+ +Y +   +   + +FD +  ++ V  N+L+S Y    
Sbjct: 306 LIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHG 365

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
                +++   M A G      T  ++L AC+     E G+++   M R
Sbjct: 366 YGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWR 414



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 28/235 (11%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T   L+  C   S+   G +VH +++    +   D F+ + LI MY   G V  A +VF+
Sbjct: 79  TYELLILCCGHRSSLSDGLRVHRHILDNGSD--QDPFLATKLIGMYSDLGSVDYARKVFD 136

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               R        + +W ++       G+ +EV+ LY  M   G + D   +  V+ AC 
Sbjct: 137 KTRKR-------TIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACV 189

Query: 309 HT----GQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEML 360
            +      +  G E     +H +    G   +    + LVD+  R G +D A  + N M 
Sbjct: 190 ASECTADHLTKGKE-----IHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMP 244

Query: 361 DRGHGSSSVSMWGALLSACHDCGK-FELGKLAAQKALELDPHNVGIYVMLSNLYA 414
            R     +V  W A+++     GK FE  +   +   E    +     M+S L A
Sbjct: 245 VR-----NVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQA 294


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  241 bits (615), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 139/402 (34%), Positives = 220/402 (54%), Gaps = 14/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  RN + +   I+ F ++G    ALK FS M   GI  + +     L +   VKD   G
Sbjct: 275 LRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDG 334

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI-PVKNSVCANALLSGYCE 164
           +     V K G  S VFVG+A+ID+Y+ L  + +AE  F ++    ++V  NAL++GY  
Sbjct: 335 RMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVL 394

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            +     +E    M    +  + FT S + +AC+   +     Q+H+ +I+   N+ +++
Sbjct: 395 NEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKS--NVESNL 452

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + SSLIE Y +CG +  A+QVF           + DVV W S++  Y +NG   + I L
Sbjct: 453 HVASSLIEAYTQCGSLENAVQVFTQIS-------DADVVSWNSIIKAYSQNGDPWKAIFL 505

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
              M+  G KP    F+TV+SACSH+G V+ G E+F+ MV DY ++P   H SC+VD+L 
Sbjct: 506 LRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILG 565

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG+L+ A   I ++  +     + S+W  LL+AC      ++ +  A+K L+L+P++  
Sbjct: 566 RAGQLENALDFIKKLTMK----PTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDAT 621

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +YV LSN+YA+   W +    R LM++K + K+ GCSWIEV 
Sbjct: 622 VYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVN 663



 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 160/516 (31%), Positives = 248/516 (48%), Gaps = 94/516 (18%)

Query: 2    VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN--PRNPLPFNVVIS 59
            +HAH    GL    L  F ++LM  YT C      G L+N  K  +  P   +   +V++
Sbjct: 825  LHAHLVIIGLAR--LTYFAAKLMSFYTEC------GQLSNARKLFDKIPNTNIRRWIVLT 876

Query: 60   DFC-RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
              C R G    AL  FS M   G+  + + L S L A   + D R G+ +   + K+ + 
Sbjct: 877  GACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFE 936

Query: 119  SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE-----------AKL 167
            S  ++ SALI +Y+K   +  A  +FD I  K+ V  NA++SGY +            K+
Sbjct: 937  SDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKM 996

Query: 168  WAGGL------------------------ELVRLMPALGLD------------------- 184
               G+                        E+ RLM A G++                   
Sbjct: 997  QQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHN 1056

Query: 185  ---YDHF-------------TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
               +D F             T+S+LL AC  ++    G+++H Y +     +  DV+++S
Sbjct: 1057 HEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAM--VIGVEKDVYVRS 1114

Query: 229  SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            +L++MY KCG +++A  +F +   R       + V W S++  Y  +GY  E I+L+  M
Sbjct: 1115 ALVDMYAKCGYISEAKILFYMMPER-------NTVTWNSLIFGYANHGYCNEAIELFNQM 1167

Query: 289  LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              + TK D + F  V++ACSH G V+LG   F  M   Y++EP  EHY+C+VDLL RAG+
Sbjct: 1168 EESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGK 1227

Query: 349  LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            L +A+ LI  M           +WGALL AC + G  EL ++AA+   EL+P + G  ++
Sbjct: 1228 LSEAYDLIKAM----PVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLL 1283

Query: 409  LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            LSNLYA    W    +++++MK++   K  GCSWIE
Sbjct: 1284 LSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 165/350 (47%), Gaps = 16/350 (4%)

Query: 85   DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
            DTYA    + A    +    G+ + AH+   G     +  + L+  Y +   + +A  +F
Sbjct: 804  DTYAKAIDMYARD--RALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLF 861

Query: 145  DEIPVKNSVCANALLSGYCEAK-LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
            D+IP  N +    +L+G C  +  +   L     M   GL  + F L ++L+AC  LS  
Sbjct: 862  DKIPNTN-IRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDR 920

Query: 204  EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
              G  +H  +++   +  +D ++ S+LI MY KCG V KA +VF+         ++KD+V
Sbjct: 921  RTGENMHTVILKN--SFESDAYIISALIYMYSKCGHVEKACRVFDWI-------VDKDLV 971

Query: 264  LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            +  +M+  Y ++G+  E + L + M   G KP+ V++ T+I+  S  G   +  E F  M
Sbjct: 972  VMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLM 1031

Query: 324  VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
              +  +EP    ++ ++    +     + +    EMLD+G   SSV++  +LL AC +  
Sbjct: 1032 TAN-GVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTI-SSLLPACTNVA 1089

Query: 384  KFELGKLAAQKALELD-PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
                GK     A+ +    +V +   L ++YAK     E   L  +M E+
Sbjct: 1090 NLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPER 1139



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 177/370 (47%), Gaps = 36/370 (9%)

Query: 26  PYTTCRHKKNLG----TLTN-CLKFLNPRNPLPFNVVISDFCRNG---SPLYALKTFSFM 77
           PY  C  K N+      L N C+ F   + P    V I++  R+G    P   +K   F 
Sbjct: 39  PYKGCMSKGNVVGGWVDLNNACILF--EKTPKRIGVSITESHRSGCTDDPEEGVKEAGFF 96

Query: 78  ------HVH--GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
                 HV   G F     + S+L+          G++    V K G  S  FV ++LID
Sbjct: 97  TRNETPHVEFGGGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLID 156

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +YAK   +  A  ++D++   ++   N L+S Y     +    ++   +  +G   +H+T
Sbjct: 157 MYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYT 216

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
            S +L  C  +SA + G+Q+HA++++      ++  + ++L+ +Y KCG++ +A  VF  
Sbjct: 217 YSTMLAVCGTISAIQEGKQLHAHVVK--MQYLSETAVGNALLTLYSKCGMMEEAEIVF-- 272

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                E    ++++ WT+ +  + ++G FK+ +K +  M  +G +P+E  F  V+++C  
Sbjct: 273 -----ESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASC-- 325

Query: 310 TGQVKLGIE--YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
            G VK  I+   F   V    +  G    + ++D+    GE+D+A K   +M   G  +S
Sbjct: 326 -GCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQM---GRAAS 381

Query: 368 SVSMWGALLS 377
           +VS W AL++
Sbjct: 382 NVS-WNALIA 390



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 154/329 (46%), Gaps = 14/329 (4%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N +IS + RNG  + A + F  +   G   + Y   + L    ++   + GKQ+ AHV K
Sbjct: 183 NCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVK 242

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
             +LS   VG+AL+ LY+K  ++ +AE++F+ +  +N +   A ++G+ +   +   L+ 
Sbjct: 243 MQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQ 302

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
             +M   G++ + FT S +L +C  +     GR  H  +I+K   + + VF+ +++I+MY
Sbjct: 303 FSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKK--GMASGVFVGTAIIDMY 360

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
              G + +A + F   G           V W +++  Y  N   ++ ++ +  M+     
Sbjct: 361 SGLGEMDEAEKQFKQMGRAASN------VSWNALIAGYVLNEKIEKAMEAFCRMVKEDVA 414

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
            +E  +  +  ACS    +   ++    ++    +E      S L++   + G L+ A +
Sbjct: 415 CNEFTYSNIFKACSSFPSLATTVQIHSRLIKS-NVESNLHVASSLIEAYTQCGSLENAVQ 473

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCG 383
           +  ++ D     + V  W +++ A    G
Sbjct: 474 VFTQISD-----ADVVSWNSIIKAYSQNG 497


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  241 bits (615), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 136/402 (33%), Positives = 220/402 (54%), Gaps = 15/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +  +I+    +  P  A++T+  M + GI  D   L S L+A   +     G
Sbjct: 360 MESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            ++     K+G +S V V ++LID+Y+K   + +A  +F  I  KN V   +L+ G    
Sbjct: 420 IRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRIN 479

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L   R M    +  +  TL ++L ACA + A   G+++HA+ +R    +G D F
Sbjct: 480 NRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHAHALR--TGVGFDGF 536

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +++++MY +CG    AL  FN           KDV  W  +L  Y + G  K  ++L+
Sbjct: 537 LPNAILDMYVRCGRKVPALNQFN--------SQKKDVTAWNILLTGYAQQGQAKLAVELF 588

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + ML     PDE+ F++++ ACS +G V  G+EYF  M + Y L P  +HY+C+VD+L R
Sbjct: 589 DKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGR 648

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG+LD A+  I +M  R       ++WGALL+AC      ELG++AA++  E D  +VG 
Sbjct: 649 AGQLDDAYDFIQDMPIR----PDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGY 704

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           Y++L NLYA    WD++ ++R LM+E+GL  D GCSW+E+ G
Sbjct: 705 YILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKG 746



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 185/369 (50%), Gaps = 22/369 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+   +NV++  + + G    AL  +  M    I  + Y   S L     V D   G
Sbjct: 158 MSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARG 217

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++ AHV + G+ S V VG+ALI +Y K   I +A ++FD++P ++ +  NA++SGY E 
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFEN 277

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                GLEL  +M  L +D D  T++ +  AC  L     GR VH Y+++     G D+ 
Sbjct: 278 GGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKS--EFGGDIS 335

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           M +SLI+MY   G + +A  VF+    R+E   +KDVV WT+M+     +    + ++ Y
Sbjct: 336 MNNSLIQMYSSLGRLEEAETVFS----RME---SKDVVSWTAMIASLVSHKLPFKAVETY 388

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
           + M + G  PDE+  V+V+SAC+  G + LGI      +H+  ++ G   +    + L+D
Sbjct: 389 KMMELEGILPDEITLVSVLSACACIGHLDLGIR-----LHEIAIKTGLVSHVIVSNSLID 443

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           +  +   +D A ++   +     G + VS    +L    +   FE      Q    + P+
Sbjct: 444 MYSKCKCVDNALEVFRNI----SGKNVVSWTSLILGLRINNRSFEALLFFRQMKESMKPN 499

Query: 402 NVGIYVMLS 410
           +V +  +LS
Sbjct: 500 SVTLISVLS 508



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 163/361 (45%), Gaps = 23/361 (6%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N+ + + C  G+   A+K    M    I ++  A  + L      +    G +V   V+ 
Sbjct: 66  NLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSS 125

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           S     V +G+AL+ ++ +   + DA  +F ++  ++    N L+ GY +A  +   L L
Sbjct: 126 SKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNL 185

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              M    +  + +T  ++L+ CAG+S    G+++HA++IR      +DV + ++LI MY
Sbjct: 186 YHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIR--FGFESDVDVGNALITMY 243

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG ++ A  +F+    R       D + W +M+  Y  NG   E ++L+  M      
Sbjct: 244 VKCGDISNARMLFDKMPKR-------DRISWNAMISGYFENGGGLEGLELFSMMRELSVD 296

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE--HYSCLVDLLCRAGELDKA 352
           PD +   TV SAC      +LG     ++V   K E G +    + L+ +    G L++A
Sbjct: 297 PDLITMTTVASACELLDNERLGRGVHGYVV---KSEFGGDISMNNSLIQMYSSLGRLEEA 353

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD---PHNVGIYVML 409
             + + M      S  V  W A++++     K     +   K +EL+   P  + +  +L
Sbjct: 354 ETVFSRM-----ESKDVVSWTAMIASLVS-HKLPFKAVETYKMMELEGILPDEITLVSVL 407

Query: 410 S 410
           S
Sbjct: 408 S 408


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  241 bits (615), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/391 (34%), Positives = 215/391 (54%), Gaps = 13/391 (3%)

Query: 56  VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
            +IS +  NG    AL+ F ++    +   +    S   A   +     GK++   + K+
Sbjct: 331 TMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT 390

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
                  VGSA++D+YAK   +  A  +F+ I  K+++C N++++   +       + L 
Sbjct: 391 KLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLF 450

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           R M   G  YD  ++S  L ACA L A  +G+++H  MI+    L +D++ +SSLI+MY 
Sbjct: 451 RQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG--PLRSDLYAESSLIDMYA 508

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG +  + +VF+    R++    K+ V W S++  YG +G  KE + L+  ML NG +P
Sbjct: 509 KCGNLNFSRRVFD----RMQ---EKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQP 561

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           D V F+ +ISAC H GQV  GI Y+  M  +Y +    EHY+C+ D+  RAG L +A++ 
Sbjct: 562 DHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFET 621

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
           IN M           +WG LL ACH  G  EL ++A++   +LDP N G YV+L+N+ A 
Sbjct: 622 INSM----PFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAG 677

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
              W ++ ++R +MKE+G++K  G SWIEV 
Sbjct: 678 AGKWRKVLKVRSIMKERGVRKVPGYSWIEVN 708



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 157/340 (46%), Gaps = 16/340 (4%)

Query: 48  PRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           P++ L  +N +IS + +NG    A   F  M   GI  D+    S L     +   +  K
Sbjct: 221 PQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCK 280

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++  ++ +   +  VF+ SALID+Y K   +  A+    +    ++V    ++SGY    
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNG 340

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                LE  R +    +     T S++  A AGL+A   G+++H  +I+    L     +
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT--KLDEKCHV 398

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            S++++MY KCG +  A +VFN    R+     KD + W SM+    +NG   E I L+ 
Sbjct: 399 GSAILDMYAKCGRLDLACRVFN----RI---TEKDAICWNSMITSCSQNGRPGEAINLFR 451

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M M GT+ D V+    +SAC++   +  G E    M+    L       S L+D+  + 
Sbjct: 452 QMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG-PLRSDLYAESSLIDMYAKC 510

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           G L+ + ++ + M ++   S     W +++SA  + G  +
Sbjct: 511 GNLNFSRRVFDRMQEKNEVS-----WNSIISAYGNHGDLK 545



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 9/251 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I  F   G   YAL  +  M   G+  D Y     + A   +K  + GK V   V 
Sbjct: 26  WNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVN 85

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
             G    VFVGS+LI LYA+   + DA+ +FD IP K+SV  N +L+GY +       ++
Sbjct: 86  LMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIK 145

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M    +  +  T + +L  CA  +  + G Q+H   I   C L  D  + ++L+ M
Sbjct: 146 IFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHG--IAVGCGLELDSPVANTLLAM 203

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KC  +  A ++F+            D+V W  ++  Y +NG   E   L+  M+  G 
Sbjct: 204 YSKCQCLQAARKLFDTLPQ-------SDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGI 256

Query: 294 KPDEVAFVTVI 304
           KPD + F + +
Sbjct: 257 KPDSITFASFL 267



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 137/336 (40%), Gaps = 46/336 (13%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +N +I+   +NG P  A+  F  M + G   D  ++  +L+A  ++    +G
Sbjct: 422 ITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYG 481

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   + K    S ++  S+LID+YAK   ++ +  +FD +  KN V  N+++S Y   
Sbjct: 482 KEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNH 541

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L L   M   G+  DH T   ++ AC                            
Sbjct: 542 GDLKECLALFHEMLRNGIQPDHVTFLGIISAC---------------------------- 573

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
                    G  G V + ++ ++L     E  I   +  +  +  ++GR G   E  +  
Sbjct: 574 ---------GHAGQVDEGIRYYHLMTE--EYGIPARMEHYACVADMFGRAGRLHEAFETI 622

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLC 344
            +M      PD   + T++ AC   G V+L     +   H + L+P    +Y  L ++  
Sbjct: 623 NSMPF---PPDAGVWGTLLGACHIHGNVELAEVASK---HLFDLDPLNSGYYVLLANVQA 676

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
            AG+  K  K+ + M +RG        W  + +A H
Sbjct: 677 GAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATH 712


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 136/402 (33%), Positives = 220/402 (54%), Gaps = 15/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +  +I+    +  P  A++T+  M + GI  D   L S L+A   +     G
Sbjct: 360 MESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            ++     K+G +S V V ++LID+Y+K   + +A  +F  I  KN V   +L+ G    
Sbjct: 420 IRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRIN 479

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L   R M    +  +  TL ++L ACA + A   G+++HA+ +R    +G D F
Sbjct: 480 NRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHAHALR--TGVGFDGF 536

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +++++MY +CG    AL  FN           KDV  W  +L  Y + G  K  ++L+
Sbjct: 537 LPNAILDMYVRCGRKVPALNQFN--------SQKKDVTAWNILLTGYAQQGQAKLAVELF 588

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + ML     PDE+ F++++ ACS +G V  G+EYF  M + Y L P  +HY+C+VD+L R
Sbjct: 589 DKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGR 648

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG+LD A+  I +M  R       ++WGALL+AC      ELG++AA++  E D  +VG 
Sbjct: 649 AGQLDDAYDFIQDMPIR----PDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGY 704

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           Y++L NLYA    WD++ ++R LM+E+GL  D GCSW+E+ G
Sbjct: 705 YILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKG 746



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 185/369 (50%), Gaps = 22/369 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+   +NV++  + + G    AL  +  M    I  + Y   S L     V D   G
Sbjct: 158 MSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARG 217

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++ AHV + G+ S V VG+ALI +Y K   I +A ++FD++P ++ +  NA++SGY E 
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFEN 277

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                GLEL  +M  L +D D  T++ +  AC  L     GR VH Y+++     G D+ 
Sbjct: 278 GGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKS--EFGGDIS 335

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           M +SLI+MY   G + +A  VF+    R+E   +KDVV WT+M+     +    + ++ Y
Sbjct: 336 MNNSLIQMYSSLGRLEEAETVFS----RME---SKDVVSWTAMIASLVSHKLPFKAVETY 388

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
           + M + G  PDE+  V+V+SAC+  G + LGI      +H+  ++ G   +    + L+D
Sbjct: 389 KMMELEGILPDEITLVSVLSACACIGHLDLGIR-----LHEIAIKTGLVSHVIVSNSLID 443

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           +  +   +D A ++   +     G + VS    +L    +   FE      Q    + P+
Sbjct: 444 MYSKCKCVDNALEVFRNI----SGKNVVSWTSLILGLRINNRSFEALLFFRQMKESMKPN 499

Query: 402 NVGIYVMLS 410
           +V +  +LS
Sbjct: 500 SVTLISVLS 508



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 163/361 (45%), Gaps = 23/361 (6%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N+ + + C  G+   A+K    M    I ++  A  + L      +    G +V   V+ 
Sbjct: 66  NLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSS 125

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           S     V +G+AL+ ++ +   + DA  +F ++  ++    N L+ GY +A  +   L L
Sbjct: 126 SKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNL 185

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              M    +  + +T  ++L+ CAG+S    G+++HA++IR      +DV + ++LI MY
Sbjct: 186 YHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIR--FGFESDVDVGNALITMY 243

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG ++ A  +F+    R       D + W +M+  Y  NG   E ++L+  M      
Sbjct: 244 VKCGDISNARMLFDKMPKR-------DRISWNAMISGYFENGGGLEGLELFSMMRELSVD 296

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE--HYSCLVDLLCRAGELDKA 352
           PD +   TV SAC      +LG     ++V   K E G +    + L+ +    G L++A
Sbjct: 297 PDLITMTTVASACELLDNERLGRGVHGYVV---KSEFGGDISMNNSLIQMYSSLGRLEEA 353

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD---PHNVGIYVML 409
             + + M      S  V  W A++++     K     +   K +EL+   P  + +  +L
Sbjct: 354 ETVFSRM-----ESKDVVSWTAMIASLVS-HKLPFKAVETYKMMELEGILPDEITLVSVL 407

Query: 410 S 410
           S
Sbjct: 408 S 408


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 219/365 (60%), Gaps = 15/365 (4%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           F  TY L + + +  S+   R GK++ AH+ + G+   V V + L+D+YA+   +  A  
Sbjct: 176 FTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASS 235

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGL 200
           +F  +P KN V  +A+++ Y + ++    LEL ++M     D   +  T+ ++L+ACA L
Sbjct: 236 VFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASL 295

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
           +A E G+ VHAY++R+   L + + + ++LI MYG+CG ++   +VF+    R       
Sbjct: 296 AALEHGKLVHAYVLRR--GLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKR------- 346

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           DV+ W S++ +YG +G  K+ I+++E M+  G  P  + F+TV+ ACSH G V+     F
Sbjct: 347 DVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILF 406

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           E M++ Y++ P  EHY+C+VD+L RA  LD+A +LI  M D   G    ++WG+LL +C 
Sbjct: 407 ESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNM-DFKPGP---TVWGSLLGSCR 462

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
                EL + A+    EL+P N G YV+LS++YAK  MW+++ ++R+ ++ +GL+K   C
Sbjct: 463 IHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSC 522

Query: 441 SWIEV 445
           SWIEV
Sbjct: 523 SWIEV 527



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 141/315 (44%), Gaps = 35/315 (11%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           L +S     S+ D   G  V   +  SG     ++ + LI++Y  L  +  A  +FDE  
Sbjct: 80  LINSCIEQNSLSD---GVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETR 136

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA----GLSAAE 204
            K     NA+      A      L L   M  +G+  + FT + +L+AC      +    
Sbjct: 137 EKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLR 196

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G+++HA+++R        V + ++L+++Y + G V+ A  VF           +K++V 
Sbjct: 197 KGKEIHAHILRH--GYEGHVHVMTTLLDVYARFGYVSYASSVFGAMP-------DKNIVS 247

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           W++M+  Y +N    + ++L++ M++    T P+ +  V+V+ AC+    ++ G      
Sbjct: 248 WSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHG-----K 302

Query: 323 MVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +VH Y L  G +      + L+ +  R GE+    ++ + M  R      V  W +L+S 
Sbjct: 303 LVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKR-----DVISWNSLISI 357

Query: 379 CHDCGKFELGKLAAQ 393
               G   LGK A Q
Sbjct: 358 ---YGMHGLGKKAIQ 369


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 141/399 (35%), Positives = 221/399 (55%), Gaps = 16/399 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           + PRN   +N  IS+   +G P  A+  F      G   D    C+ L A    +    G
Sbjct: 119 MPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLG 178

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+   V +SG+   V V + +ID+Y K   +  AE++F+ +  +NSV    +++  CE 
Sbjct: 179 RQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAA-CEQ 237

Query: 166 KLWAGGLELVRLM-PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                   +V LM    G++   + +S+++ A AG+S  EFGR VHA  ++ C  +  D+
Sbjct: 238 NDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKAC--VEGDI 295

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ S+L++MYGKCG +    QVF+    R       ++V W +M+  Y   G     + L
Sbjct: 296 FVGSALVDMYGKCGSIEDCEQVFHEMPER-------NLVSWNAMISGYAHQGDVDMAMTL 348

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +E M       + V  + V+SACS  G VKLG E FE M   Y++EPG EHY+C+ D+L 
Sbjct: 349 FEEMQSEAV-ANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLG 407

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG +++A++ + +M  R     ++S+WGALL+AC   G+ ELGK+AA    +LDP + G
Sbjct: 408 RAGMVERAYEFVQKMPIR----PTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSG 463

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
            +V+LSN++A    WDE   +R+ MK+ G+KK  GCSW+
Sbjct: 464 NHVLLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWV 502



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 161/371 (43%), Gaps = 26/371 (7%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+    R  + +  +IS   +NG    AL  FS M    I  + +    +  AST++   
Sbjct: 15  LQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTALCLP 74

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GKQ+ A   K G ++  FVG +  D+Y+K  L  +A+ +FDE+P +N    NA +S  
Sbjct: 75  FAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNA 134

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                    ++       +G + D  T  A L ACA     + GRQ+H  +IR       
Sbjct: 135 VLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRS--GFEG 192

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV + + +I++YGKC  V  A  VFN  G R       + V W +M+    +N   ++  
Sbjct: 193 DVSVANGIIDVYGKCKEVELAEMVFNGMGRR-------NSVSWCTMVAACEQNDEKEKAC 245

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
            ++      G +  +    +VISA +    ++ G       VH   ++   E      S 
Sbjct: 246 VVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRS-----VHALAVKACVEGDIFVGSA 300

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           LVD+  + G ++   ++ +EM +R     ++  W A++S     G  ++     +   E+
Sbjct: 301 LVDMYGKCGSIEDCEQVFHEMPER-----NLVSWNAMISGYAHQGDVDMAMTLFE---EM 352

Query: 399 DPHNVGIYVML 409
               V  YV L
Sbjct: 353 QSEAVANYVTL 363



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 19/253 (7%)

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y+KL L + A+L+    P +  V   AL+SG  +   ++  L     M    +  + FT
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVF 247
                +A   L     G+Q+HA  ++    LG  ND F+  S  +MY K GL  +A ++F
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALK----LGQINDKFVGCSAFDMYSKTGLKFEAQRLF 116

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
           +    R       +V +W + +     +G   + I  +      G +PD + F   ++AC
Sbjct: 117 DEMPPR-------NVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNAC 169

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           +    + LG +    +V     E      + ++D+  +  E++ A     EM+  G G  
Sbjct: 170 ADARCLDLGRQ-LHGLVIRSGFEGDVSVANGIIDVYGKCKEVELA-----EMVFNGMGRR 223

Query: 368 SVSMWGALLSACH 380
           +   W  +++AC 
Sbjct: 224 NSVSWCTMVAACE 236


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 139/384 (36%), Positives = 223/384 (58%), Gaps = 22/384 (5%)

Query: 70  ALKTFSFMHVHGIFLDTYAL------CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFV 123
           AL   + M   G+ +D+Y+       C +++AS +   AR  ++V AH  + G+     V
Sbjct: 158 ALARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARV-REVHAHAIRRGYALHTHV 216

Query: 124 GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL 183
            + LID YAKL ++  AE +F  +P +N V  +A++  Y + +  A  +EL + M A   
Sbjct: 217 ATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDA 276

Query: 184 DY--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           D   +  T+ ++L ACAG++A   G+ +HAY++R+     + V + ++L+ MY +CG + 
Sbjct: 277 DLVPNSITIVSVLNACAGVNALSHGKLLHAYILRR--GFDSLVSVLNALMAMYMRCGCLE 334

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
               +F   GHR      +DVV W S++  YG +G+  E ++++E M+  G  P  + F+
Sbjct: 335 VGRHIFKWIGHR------RDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFI 388

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           +V+ ACSH G V  G   FE MV +Y + P  EHY+C+VDLL RAG+LD+A +LI  M  
Sbjct: 389 SVLGACSHAGLVNEGKMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSM-- 445

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
             H   S  +WGALL AC   G  E  ++A     +L+P N G YV+L+++YA+  + ++
Sbjct: 446 --HIEPSPQVWGALLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQ 503

Query: 422 IGQLRELMKEKGLKKDVGCSWIEV 445
           +G L+EL++E  L+K  GCSWIEV
Sbjct: 504 VGVLKELLEEHALEKVTGCSWIEV 527



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 24/232 (10%)

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S  F+ + LI+ YA L  +  A  +FDE PVKN    NALL     A      L  +  M
Sbjct: 106 SDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLADM 165

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFG-----RQVHAYMIRKCCNLGNDVFMQSSLIEM 233
             LG+  D ++ +  L+AC  +SA+        R+VHA+ IR+   L   V   ++LI+ 
Sbjct: 166 GRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHV--ATTLIDC 223

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G+V  A  VF     R       +VV W++M+G Y +N    + I+L++ M+ +  
Sbjct: 224 YAKLGIVRYAESVFAAMPER-------NVVSWSAMIGCYAKNERPADAIELFKDMMASDA 276

Query: 294 K--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
              P+ +  V+V++AC+    +  G      ++H Y L  G   +  LV +L
Sbjct: 277 DLVPNSITIVSVLNACAGVNALSHG-----KLLHAYILRRG---FDSLVSVL 320


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 143/434 (32%), Positives = 234/434 (53%), Gaps = 43/434 (9%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKT 73
           I F + L+  Y+ C      G L   L+    +  RN + +  +I+ + R+G    A+  
Sbjct: 148 INFSNTLLDMYSKC------GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIIL 201

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
              M   G+ LD  A+ S L A         GK V  ++  +   S++FV +AL+D+YAK
Sbjct: 202 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK 261

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A  +F  + VK+ +  N ++                 L P      D  T++ +
Sbjct: 262 CGSMEGANSVFSTMVVKDIISWNTMVG---------------ELKP------DSRTMACI 300

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA LSA E G+++H Y++R      +D  + ++L+++Y KCG++  A  +F++    
Sbjct: 301 LPACASLSALERGKEIHGYILRN--GYSSDRHVANALVDLYVKCGVLGLARLLFDMIP-- 356

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                +KD+V WT M+  YG +GY  E I  +  M   G +PDEV+F++++ ACSH+G +
Sbjct: 357 -----SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 411

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  +F  M +D+ +EP  EHY+C+VDLL R G L KA+K I  +      +   ++WG
Sbjct: 412 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETL----PIAPDATIWG 467

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL  C      EL +  A++  EL+P N G YV+L+N+YA+   W+E+ ++RE + +KG
Sbjct: 468 ALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKG 527

Query: 434 LKKDVGCSWIEVTG 447
           L+K+ GCSWIE+ G
Sbjct: 528 LRKNPGCSWIEIKG 541



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 163/372 (43%), Gaps = 49/372 (13%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS +  NG     L  +  M   GI +D   + S L           GK V
Sbjct: 76  RDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAV 135

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +   KS +   +   + L+D+Y+K   +  A  +F+++  +N V   ++++GY      
Sbjct: 136 HSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWS 195

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G + L++ M   G+  D   ++++L ACA   + + G+ VH Y+  K  N+ +++F+ +
Sbjct: 196 DGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI--KANNMASNLFVCN 253

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  A  VF+         + KD++ W +M+G                  
Sbjct: 254 ALMDMYAKCGSMEGANSVFSTM-------VVKDIISWNTMVG------------------ 288

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYS-CLVDLLC 344
                KPD      ++ AC+    ++ G E     +H Y L  G     H +  LVDL  
Sbjct: 289 ---ELKPDSRTMACILPACASLSALERGKE-----IHGYILRNGYSSDRHVANALVDLYV 340

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHN 402
           + G L  A +L+ +M+     S  +  W  +++    H  G   +      +   ++P  
Sbjct: 341 KCGVLGLA-RLLFDMIP----SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDE 395

Query: 403 VGIYVMLSNLYA 414
           V     +S LYA
Sbjct: 396 VSF---ISILYA 404



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 122/263 (46%), Gaps = 27/263 (10%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD++  ++ +  N+++SGY    L   GL + + M  LG+D D  T+ ++L  CA 
Sbjct: 66  ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAK 125

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
                 G+ VH+  I+   +    +   ++L++MY KCG +  AL+VF   G R      
Sbjct: 126 SGTLSLGKAVHSLAIKS--SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER------ 177

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
            +VV WTSM+  Y R+G+    I L + M   G K D VA  +++ AC+ +G +  G + 
Sbjct: 178 -NVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD- 235

Query: 320 FEWMVHDY--KLEPGPEHYSC--LVDLLCRAGELDKAWKLINEMLDR---------GHGS 366
               VHDY          + C  L+D+  + G ++ A  + + M+ +         G   
Sbjct: 236 ----VHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELK 291

Query: 367 SSVSMWGALLSACHDCGKFELGK 389
                   +L AC      E GK
Sbjct: 292 PDSRTMACILPACASLSALERGK 314


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 219/365 (60%), Gaps = 15/365 (4%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           F  TY L + + +  +V     GK++ AH+T+ G+ S V++ + L+D+YA+   +  A  
Sbjct: 179 FTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASY 238

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGL 200
           +F  +PV+N V  +A+++ Y +       L   R M     D   +  T+ ++L+ACA L
Sbjct: 239 VFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASL 298

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
           +A E G+ +H Y++R+   L + + + S+L+ MYG+CG +    +VF+    R+    ++
Sbjct: 299 AALEQGKLIHGYILRR--GLDSILPVISALVTMYGRCGKLEVGQRVFD----RMH---DR 349

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           DVV W S++  YG +GY K+ I+++E ML NG  P  V FV+V+ ACSH G V+ G   F
Sbjct: 350 DVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLF 409

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           E M  D+ ++P  EHY+C+VDLL RA  LD+A K++ +M           +WG+LL +C 
Sbjct: 410 ETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDM----RTEPGPKVWGSLLGSCR 465

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
             G  EL + A+++   L+P N G YV+L+++YA+  MWDE+ ++++L++ +GL+K  G 
Sbjct: 466 IHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525

Query: 441 SWIEV 445
            W+EV
Sbjct: 526 CWMEV 530



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 156/345 (45%), Gaps = 41/345 (11%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYAL---CSSLTASTSVKDARFGKQVQAH 111
           N +I   C+ G    A++  S          TY L   C    +S S  DA    +V  H
Sbjct: 50  NQLIQSLCKEGKLKQAIRVLS--QESSPSQQTYELLILCCGHRSSLS--DAL---RVHRH 102

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           +  +G     F+ + LI +Y+ L  +  A  +FD+   +     NAL      A      
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAG----LSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           L L   M  +G++ D FT + +L+AC      ++    G+++HA++ R+     + V++ 
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRR--GYSSHVYIM 220

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L++MY + G V  A  VF        G   ++VV W++M+  Y +NG   E ++ +  
Sbjct: 221 TTLVDMYARFGCVDYASYVFG-------GMPVRNVVSWSAMIACYAKNGKAFEALRTFRE 273

Query: 288 ML--MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVD 341
           M+     + P+ V  V+V+ AC+    ++ G      ++H Y L  G +      S LV 
Sbjct: 274 MMRETKDSSPNSVTMVSVLQACASLAALEQGK-----LIHGYILRRGLDSILPVISALVT 328

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCGK 384
           +  R G+L+   ++ + M DR      V  W +L+S+   H  GK
Sbjct: 329 MYGRCGKLEVGQRVFDRMHDR-----DVVSWNSLISSYGVHGYGK 368



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 2/169 (1%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYALCSSLTASTSVKDARFGK 106
           RN + ++ +I+ + +NG    AL+TF  M         ++  + S L A  S+     GK
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGK 305

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +  ++ + G  S + V SAL+ +Y +   +   + +FD +  ++ V  N+L+S Y    
Sbjct: 306 LIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHG 365

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
                +++   M A G      T  ++L AC+     E G+++   M R
Sbjct: 366 YGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWR 414



 Score = 41.6 bits (96), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 28/235 (11%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T   L+  C   S+     +VH +++    +   D F+ + LI MY   G V  A +VF+
Sbjct: 79  TYELLILCCGHRSSLSDALRVHRHILDNGSD--QDPFLATKLIGMYSDLGSVDYARKVFD 136

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               R        + +W ++       G+ +EV+ LY  M   G + D   +  V+ AC 
Sbjct: 137 KTRKR-------TIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACV 189

Query: 309 HT----GQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEML 360
            +      +  G E     +H +    G   +    + LVD+  R G +D A  +   M 
Sbjct: 190 ASECTVNHLMKGKE-----IHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMP 244

Query: 361 DRGHGSSSVSMWGALLSACHDCGK-FELGKLAAQKALELDPHNVGIYVMLSNLYA 414
            R     +V  W A+++     GK FE  +   +   E    +     M+S L A
Sbjct: 245 VR-----NVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQA 294


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 147/449 (32%), Positives = 246/449 (54%), Gaps = 23/449 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA+    G  +   ++  + L+  YT C   K    L + +     +N + +  +IS 
Sbjct: 273 QIHAYVLRRGTEMDVSVV--NVLIDFYTKCNRVKAGRKLFDQMVV---KNIISWTTMISG 327

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +N     A+K F  M+  G   D +A  S LT+  S +    G+QV A+  K+   S 
Sbjct: 328 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESD 387

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            FV + LID+YAK  L+ DA+ +FD +  +N +  NA++ GY   +  +  LEL   M  
Sbjct: 388 EFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV 447

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV--FMQSSLIEMYGKCG 238
                + FT +AL+ A + L++   G+Q H  +++    +G D   F+ ++L++MY KCG
Sbjct: 448 RLQKPNEFTFAALITAASNLASLRHGQQFHNQLVK----MGLDFCPFVTNALVDMYAKCG 503

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            + +A ++FN         I +DVV W SM+  + ++G  +E + ++  M+  G +P+ V
Sbjct: 504 SIEEARKMFN-------SSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYV 556

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            FV V+SACSH G+V+ G+ +F  M   + ++PG EHY+C+V LL R+G+L +A + I +
Sbjct: 557 TFVAVLSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEK 615

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M        +  +W +LLSAC   G  ELGK AA+ A+  DP + G Y++LSN++A   M
Sbjct: 616 M----PIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGM 671

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           W ++ ++R+ M    + K+ G SWIEV  
Sbjct: 672 WADVKKVRDRMDSSEVVKEPGRSWIEVNN 700



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 179/367 (48%), Gaps = 17/367 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ +  + +  +I+ + + G    +L+ F+ M    +  D Y + S L+A + ++    G
Sbjct: 212 LSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGG 271

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ A+V + G    V V + LID Y K   +     +FD++ VKN +    ++SGY + 
Sbjct: 272 KQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQN 331

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 ++L   M  LG   D F  +++L +C    A E GRQVHAY I+   NL +D F
Sbjct: 332 SFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIK--ANLESDEF 389

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +++ LI+MY K  L+  A +VF++          ++V+ + +M+  Y       E ++L+
Sbjct: 390 VKNGLIDMYAKSNLLIDAKKVFDVMAE-------QNVISYNAMIEGYSSQEKLSEALELF 442

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M +   KP+E  F  +I+A S+   ++ G ++   +V    L+  P   + LVD+  +
Sbjct: 443 HEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVK-MGLDFCPFVTNALVDMYAK 501

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNV 403
            G +++A K+ N  + R      V  W +++S     G+ E  LG         + P+ V
Sbjct: 502 CGSIEEARKMFNSSIWR-----DVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYV 556

Query: 404 GIYVMLS 410
               +LS
Sbjct: 557 TFVAVLS 563



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 162/320 (50%), Gaps = 19/320 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           +N + ++ ++S + + G    AL  F       G   + + L S + A T +     G Q
Sbjct: 113 KNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ 172

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +   V +SG+   V+VG++LID Y+K   I +A L+FD++  K +V    +++GY +   
Sbjct: 173 LHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGR 232

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
            A  LEL   M    +  D + +S++L AC+ L   E G+Q+HAY++R+   +  DV + 
Sbjct: 233 SAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM--DVSVV 290

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           + LI+ Y KC  V    ++F+         + K+++ WT+M+  Y +N +  E +KL+  
Sbjct: 291 NVLIDFYTKCNRVKAGRKLFDQM-------VVKNIISWTTMISGYMQNSFDWEAMKLFGE 343

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLL 343
           M   G KPD  A  +V+++C     ++ G +     VH Y ++   E      + L+D+ 
Sbjct: 344 MNRLGWKPDGFACTSVLTSCGSREALEQGRQ-----VHAYTIKANLESDEFVKNGLIDMY 398

Query: 344 CRAGELDKAWKLINEMLDRG 363
            ++  L  A K+ + M ++ 
Sbjct: 399 AKSNLLIDAKKVFDVMAEQN 418



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 86/181 (47%), Gaps = 24/181 (13%)

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +H  +I     L +D F+ + LI +  K   V  A  VF+   H       K+++ W+SM
Sbjct: 71  IHGQII--VSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPH-------KNLITWSSM 121

Query: 269 LGVYGRNGYFKEVIKLY-EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           + +Y + GY +E + ++ +    +G  P+E    +VI AC+  G V+ G +     +H +
Sbjct: 122 VSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ-----LHGF 176

Query: 328 KLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
            +  G +      + L+D   + G +++A  + +++ ++     +   W  +++    CG
Sbjct: 177 VVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEK-----TAVTWTTIIAGYTKCG 231

Query: 384 K 384
           +
Sbjct: 232 R 232


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  241 bits (614), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 148/452 (32%), Positives = 233/452 (51%), Gaps = 53/452 (11%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVI 58
           +HAH     +     II ++ L+  Y+ C      G L    +  N    RN   +N +I
Sbjct: 300 IHAHLIRANITKN--IIVETELVHMYSEC------GRLNYAKEIFNRMAERNAYSWNSMI 351

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
             + +NG    AL+ F  M ++GI  D ++L S L++  S+ D++ G+++   + ++   
Sbjct: 352 EGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME 411

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSVCANALLSGYCEAKLWAGGLELVR 176
               +   L+D+YAK   +  A  ++D+   K  N+   N++L+GY    L         
Sbjct: 412 EEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFL 471

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M    ++YD  T+  ++                           N + ++++L++MY K
Sbjct: 472 EMLESDIEYDVLTMVTIV---------------------------NLLVLETALVDMYSK 504

Query: 237 CGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           CG +TKA  VF N+ G        K++V W +M+  Y ++G  KE + LYE M   G  P
Sbjct: 505 CGAITKARTVFDNMNG--------KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYP 556

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           +EV F+ ++SACSHTG V+ G+  F  M  DY +E   EHY+C+VDLL RAG L+ A + 
Sbjct: 557 NEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEF 616

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
           + +M         VS WGALL AC      ++G+LAAQ+  ELDP N G YV++SN+YA 
Sbjct: 617 VEKM----PIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAA 672

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
              W E+  +R++MK KG+KKD G SWIE+  
Sbjct: 673 AGRWKEVEDIRQMMKMKGVKKDPGVSWIEINS 704



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 166/337 (49%), Gaps = 15/337 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN   +N +I  + R    + A   F  M   G+  D +   S+L    +++    GKQV
Sbjct: 138 RNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQV 197

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +   G+    FVG+ALID+YAK         +FDE+  +N V  N+++S   +   +
Sbjct: 198 HSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHF 257

Query: 169 AGGLELVRLMPAL--GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
              L L   M     G+  D FT + LL  CA       GRQ+HA++IR   N+  ++ +
Sbjct: 258 NDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR--ANITKNIIV 315

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           ++ L+ MY +CG +  A ++FN    R       +   W SM+  Y +NG  +E ++L++
Sbjct: 316 ETELVHMYSECGRLNYAKEIFNRMAER-------NAYSWNSMIEGYQQNGETQEALRLFK 368

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M +NG KPD  +  +++S+C      + G E   ++V +   E G      LVD+  + 
Sbjct: 369 QMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV-VLVDMYAKC 427

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           G +D AWK+ ++ + +   +   ++W ++L+   + G
Sbjct: 428 GSMDYAWKVYDQTIKKDRNT---ALWNSILAGYANKG 461



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 176/377 (46%), Gaps = 45/377 (11%)

Query: 41  NCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHV--HGIFLDTYALCSSLTA 95
           +CLK  +    RN + +N +IS   + G    AL  F  M     GI  D +   + LT 
Sbjct: 228 SCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTL 287

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
             + ++   G+Q+ AH+ ++    ++ V + L+ +Y++   ++ A+ +F+ +  +N+   
Sbjct: 288 CANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSW 347

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           N+++ GY +       L L + M   G+  D F+LS++L +C  LS ++ GR++H +++R
Sbjct: 348 NSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVR 407

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
               +  +  +Q  L++MY KCG +  A +V++    +     +++  LW S+L  Y   
Sbjct: 408 N--TMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKK-----DRNTALWNSILAGYANK 460

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G  KE    +  ML +  + D +  VT+++         L +E                 
Sbjct: 461 GLKKESFNHFLEMLESDIEYDVLTMVTIVNL--------LVLE----------------- 495

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQ 393
            + LVD+  + G + KA  + + M    +G + VS W A++S  + H C K  L      
Sbjct: 496 -TALVDMYSKCGAITKARTVFDNM----NGKNIVS-WNAMISGYSKHGCSKEALILYEEM 549

Query: 394 KALELDPHNVGIYVMLS 410
               + P+ V    +LS
Sbjct: 550 PKKGMYPNEVTFLAILS 566



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 137/299 (45%), Gaps = 27/299 (9%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD---AELMFDEIPVKNSVCANALLSG 161
           GK +   +  +G+    ++ + ++ LYA+   + D   A  +F+E+P +N    N ++  
Sbjct: 90  GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILA 149

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           Y     +     +   M  +G+  D+FT ++ LR C  L + + G+QVH+ +I   C   
Sbjct: 150 YARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLI--ACGFK 207

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            D F+ ++LI+MY KC      L+VF+  G R       + V W S++    + G+F + 
Sbjct: 208 GDTFVGNALIDMYAKCDDEESCLKVFDEMGER-------NQVTWNSIISAEAQFGHFNDA 260

Query: 282 IKLYEAML--MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           + L+  M    +G +PD+  F T+++ C++      G +    ++    +       + L
Sbjct: 261 LVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR-ANITKNIIVETEL 319

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           V +    G L+ A ++ N M +R   S     W +++      G+        Q+AL L
Sbjct: 320 VHMYSECGRLNYAKEIFNRMAERNAYS-----WNSMIEGYQQNGE-------TQEALRL 366


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  241 bits (614), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 146/403 (36%), Positives = 229/403 (56%), Gaps = 16/403 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ RN + +  +IS + +NG P+ AL+ F  M    +  D  AL S L A T V+D   G
Sbjct: 230 LDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQG 289

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K +   V K G      +  +L  +YAK   +  A   FD++ + N +  NA++SGY + 
Sbjct: 290 KSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKN 349

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L + M +  +  D  T+ + + ACA + + +  + +  Y+ +      NDVF
Sbjct: 350 GYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINK--TEYRNDVF 407

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI+M+ KCG V  A +VF+         ++KDVV+W++M+  YG +G  ++ I L+
Sbjct: 408 VNTALIDMFAKCGSVDLAREVFDRT-------LDKDVVVWSAMIVGYGLHGRGQDAIDLF 460

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
            AM   G  P++V FV +++AC+H+G V+ G E F  M + Y +E   +HY+C+VDLL R
Sbjct: 461 YAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKY-YGIEARHQHYACVVDLLGR 519

Query: 346 AGELDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           +G L++A+  I  M ++ G     VS+WGALL AC       LG+ AA++   LDP N G
Sbjct: 520 SGHLNEAYDFITTMPIEPG-----VSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTG 574

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            YV LSNLYA   +WD + ++R LM+EKGL KD+G S IE+ G
Sbjct: 575 HYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEING 617



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 193/427 (45%), Gaps = 64/427 (14%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            KFLN  + LP  +  SD+     P       SF              SSL   +  K  
Sbjct: 44  FKFLNFYSSLPLPLDHSDYI----PYSGFDFDSFF-------------SSLLDHSVHK-- 84

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R   Q+ A +  SG + S F+ +  ++    +  I  A  +FDE P  +    NA++ GY
Sbjct: 85  RHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGY 144

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                +   +E+   M A G++ D FTL  +L+AC+G+   E G++VH  + R      +
Sbjct: 145 SSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFR--LGFES 202

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DVF+Q+ L+ +Y KCG V +A  VF       EG  ++++V WTSM+  YG+NG   E +
Sbjct: 203 DVFVQNGLVALYAKCGRVEQARIVF-------EGLDDRNIVSWTSMISGYGQNGLPMEAL 255

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQVKLGIEYF----------- 320
           +++  M     KPD +A V+V+ A +           H   VK+G+E+            
Sbjct: 256 RIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMY 315

Query: 321 ----EWMV----HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
               + MV     D    P    ++ ++    + G  ++A  L  EM+ +   + S+++ 
Sbjct: 316 AKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVR 375

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHN-VGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
            A+L AC   G  +L K       + +  N V +   L +++AK C    +   RE+  +
Sbjct: 376 SAIL-ACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAK-C--GSVDLAREVF-D 430

Query: 432 KGLKKDV 438
           + L KDV
Sbjct: 431 RTLDKDV 437



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 171/363 (47%), Gaps = 25/363 (6%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I  +  +     A++ +S M   G+  D + L   L A + V     GK+V   + 
Sbjct: 137 WNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIF 196

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           + G+ S VFV + L+ LYAK   +  A ++F+ +  +N V   +++SGY +  L    L 
Sbjct: 197 RLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALR 256

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M    +  D   L ++LRA   +   E G+ +H  +++       D+ +  SL  M
Sbjct: 257 IFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLI--SLTAM 314

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V  A   F+      + EI  +V++W +M+  Y +NGY  E + L++ M+    
Sbjct: 315 YAKCGQVMVARSFFD------QMEI-PNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNI 367

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--KLEPGPEHY--SCLVDLLCRAGEL 349
           + D +   + I AC+  G + L     +WM  DY  K E   + +  + L+D+  + G +
Sbjct: 368 RTDSITVRSAILACAQVGSLDLA----KWM-GDYINKTEYRNDVFVNTALIDMFAKCGSV 422

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           D A ++ +  LD+      V +W A++     H  G+  +    A K   + P++V    
Sbjct: 423 DLAREVFDRTLDK-----DVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVG 477

Query: 408 MLS 410
           +L+
Sbjct: 478 LLT 480


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  241 bits (614), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 136/415 (32%), Positives = 225/415 (54%), Gaps = 20/415 (4%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G        +  R+ + ++ +++ F   G PL A++ +  M   G+  D   +   + A
Sbjct: 159 MGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
            T+ ++ R G  V  H+ + G    V   ++L+D+YAK  L+  A  +F  +  +N V  
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           +A++SG+ +       L L R M A G+  D   L + L AC+ +   + GR VH +++R
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338

Query: 216 K---CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           +    C LG      ++ I+MY KCG +  A  +FN+   R       D++LW +M+   
Sbjct: 339 RFDFNCILG------TAAIDMYSKCGSLASAQMLFNMISDR-------DLILWNAMIACC 385

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           G +G  ++ + L++ M   G +PD   F +++SA SH+G V+ G  +F  MV+ +K+ P 
Sbjct: 386 GAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPA 445

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
            +HY CLVDLL R+G +++A  L+  M        +V++W ALLS C +  K ELG+  A
Sbjct: 446 EKHYVCLVDLLARSGLVEEASDLLTSM----KAEPTVAIWVALLSGCLNNKKLELGESIA 501

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
              LEL P +VG+  ++SNLYA    WD++ Q+R+LMK+ G KK  GCS IE+ G
Sbjct: 502 DNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRG 556



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 170/357 (47%), Gaps = 29/357 (8%)

Query: 63  RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF 122
           R GSP  AL+ F  +       D+     +L+A   + D R G+ V+     +G+   VF
Sbjct: 86  RRGSPASALRVFRALPP-AARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           V S+L+ LYA+   + DA  +FD +P ++ V  + +++G+  A      +++ R M   G
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG 204

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D   +  +++AC        G  VH +++R    +  DV   +SL++MY K GL+  
Sbjct: 205 VKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRM--DVVTATSLVDMYAKNGLLDV 262

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A +VF L  HR +       V W++M+  + +NG   E ++L+  M  +G +PD  A V+
Sbjct: 263 ACRVFGLMVHRND-------VSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVS 315

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL-----VDLLCRAGELDKAWKLIN 357
            + ACS+ G +KLG     ++V  +        ++C+     +D+  + G L  A  L N
Sbjct: 316 ALLACSNIGFLKLGRSVHGFIVRRFD-------FNCILGTAAIDMYSKCGSLASAQMLFN 368

Query: 358 EMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
            + DR      + +W A+++ C  H  G+  L          + P +     +LS L
Sbjct: 369 MISDR-----DLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSAL 420


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 149/432 (34%), Positives = 248/432 (57%), Gaps = 24/432 (5%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTF 74
           I  + LM  Y+ C      G + +  K  +    R+ + +N ++    +NG    AL  F
Sbjct: 83  ITSNMLMNMYSKC------GLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLF 136

Query: 75  SFMHVHGIFLDTYALCSSLTASTSVKDARFG-KQVQAHVTKSGWLSSVFVGSALIDLYAK 133
             M   G     + + SS+  + + K   F  KQ+     K+   S+VFVG+AL+D+YAK
Sbjct: 137 MQMQKEGTSCSEFTV-SSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAK 195

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
             L+ DA L+F+ +P ++ V  +++++GY + +L+   L L     A+GL+++ FT+S+ 
Sbjct: 196 CGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSA 255

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA  +A   G+QV A   +    +G+++F+ SSLI+MY KCG++ +A  VF+     
Sbjct: 256 LSACAARAALIEGKQVQAVSCKT--GIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE-- 311

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                 K+VVLW ++L  + R+    E +  +E M   G  P+++ +++V+SACSH G V
Sbjct: 312 -----EKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLV 366

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G +YF+ M+  + + P   HYSC+VD+L RAG L +A     + +DR    ++ SMWG
Sbjct: 367 EKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEA----KDFIDRMPFDATASMWG 422

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           +LL++C      EL ++AA+   E++PHN G +V+LSN+YA    W+E+ + R L+KE  
Sbjct: 423 SLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESK 482

Query: 434 LKKDVGCSWIEV 445
            KK+ G SWIE+
Sbjct: 483 AKKERGKSWIEI 494



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 136/287 (47%), Gaps = 19/287 (6%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L +S   + A  G    A + + G  +     + L+++Y+K  L+  A  +FDE+PV++ 
Sbjct: 54  LQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSL 113

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  N ++  + +       L L   M   G     FT+S+++ ACA        +Q+H +
Sbjct: 114 VSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGF 173

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            ++    L ++VF+ ++L+++Y KCGLV  A  VF     R +       V W+SM+  Y
Sbjct: 174 ALKTA--LDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD-------VTWSSMVAGY 224

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            +N  ++E + L+      G + ++    T+ SA S        IE  +      K   G
Sbjct: 225 VQNELYEEALVLFHRAQAMGLEHNQ---FTISSALSACAARAALIEGKQVQAVSCKTGIG 281

Query: 333 PEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
              +  S L+D+  + G +++A+ + + + ++     +V +W A+LS
Sbjct: 282 SNIFVISSLIDMYAKCGIIEEAYTVFSSVEEK-----NVVLWNAILS 323


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 143/401 (35%), Positives = 218/401 (54%), Gaps = 14/401 (3%)

Query: 48  PRNP-LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           P+N  +P++ +IS F ++G    AL+ F  M    +  + +   S L AS  ++     K
Sbjct: 209 PKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSK 268

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +  H  K+G  + VFV +AL+  YAK   I  +  +F+ +  +N V  N ++  Y +  
Sbjct: 269 TIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLG 328

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L L   M    +     T S++LRACA L+A E G QVH    +     G DV +
Sbjct: 329 DGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTI--YGQDVAV 386

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++LI+MY KCG +  A  +F++   R       D V W +++  Y  +G   E IK++ 
Sbjct: 387 GNALIDMYAKCGSIKDARFMFDMLDLR-------DKVSWNAIICGYSMHGLGVEAIKMFN 439

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M     KPDE+ FV V+SACS+TG++  G +YF  M  DY +EP  EHY+C+V L+ R+
Sbjct: 440 LMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRS 499

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G LD+A K I ++        SV +W ALL AC      ELG+++AQ+ LEL+P +   +
Sbjct: 500 GNLDQAVKFIEDI----PFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASH 555

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           V+LSN+YA+   W  +  +R+ MK KG+KK+ G SWIE  G
Sbjct: 556 VLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQG 596



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 183/403 (45%), Gaps = 51/403 (12%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + F  +I  + ++   + A + F+ +H  G  L+ +   + L    S++ A  G+ V
Sbjct: 9   RNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIV 68

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K G+ S+ F+G+ALID Y+    +  A  +FDEI  K+ V    +++ Y E   +
Sbjct: 69  HGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCF 128

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
           +  LE    M   G   ++FT + +L+AC GL   + G+ VH  +++   N   D+++  
Sbjct: 129 SEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKT--NYERDLYVGV 186

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEA 287
            L+E+Y +CG    A + F        G++ K DV+ W+ M+  + ++G  ++ ++++  
Sbjct: 187 GLLELYTRCGDNDDAWRAF--------GDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQ 238

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLL 343
           M      P++  F +V+ A +    + L        +H + L+ G        + L+   
Sbjct: 239 MRRAFVIPNQFTFSSVLQASADIESLDLSK-----TIHGHALKAGLSTDVFVSNALMACY 293

Query: 344 CRAGELDKAWKLINEMLDR---------------GHGSSSVSM---------------WG 373
            + G ++++ +L   + DR               G G  ++S+               + 
Sbjct: 294 AKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYS 353

Query: 374 ALLSACHDCGKFELG-KLAAQKALELDPHNVGIYVMLSNLYAK 415
           ++L AC      ELG ++    A  +   +V +   L ++YAK
Sbjct: 354 SILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAK 396



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 172/378 (45%), Gaps = 48/378 (12%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ ++ + +  +I+ +  N     AL+ FS M V G   + +     L A   +++   G
Sbjct: 107 ISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAG 166

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V   V K+ +   ++VG  L++LY +     DA   F ++P  + +  + ++S + ++
Sbjct: 167 KTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQS 226

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 LE+   M    +  + FT S++L+A A + + +  + +H + ++    L  DVF
Sbjct: 227 GQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALK--AGLSTDVF 284

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L+  Y KCG + +++++F       E   +++ V W +++  Y + G  +  + L+
Sbjct: 285 VSNALMACYAKCGCIEQSMELF-------EALSDRNDVSWNTIIVSYVQLGDGERALSLF 337

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF---EWMVHDYKLEPGPEHYSCLVDL 342
             ML    +  EV + +++ AC+    ++LG++        ++   +  G    + L+D+
Sbjct: 338 SNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVG----NALIDM 393

Query: 343 LCRAGELDKAWKLINEMLD----------------RGHGSSSVSMWG------------- 373
             + G +  A + + +MLD                 G G  ++ M+              
Sbjct: 394 YAKCGSIKDA-RFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELT 452

Query: 374 --ALLSACHDCGKFELGK 389
              +LSAC + G+ + GK
Sbjct: 453 FVGVLSACSNTGRLDEGK 470



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 126/264 (47%), Gaps = 36/264 (13%)

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
           ++FDE+P +N+V    L+ GY ++  +    EL   +   G + + F  + +L+    + 
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NK 260
            AE GR VH  +++     G++ F+ ++LI+ Y   G V+ A +VF+        EI +K
Sbjct: 61  WAELGRIVHGCVLK--VGYGSNTFIGTALIDAYSVSGCVSMAREVFD--------EISSK 110

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           D+V WT M+  Y  N  F E ++ +  M + G KP+   F  V+ AC       LG++ F
Sbjct: 111 DMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKAC-------LGLQNF 163

Query: 321 EW--MVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
           +    VH   L+   E        L++L  R G+ D AW+   +M       + V  W  
Sbjct: 164 DAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDM-----PKNDVIPWSF 218

Query: 375 LLSACHDCGKFELGKLAAQKALEL 398
           ++S     G+       ++KALE+
Sbjct: 219 MISRFAQSGQ-------SEKALEI 235



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 120/275 (43%), Gaps = 22/275 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVV 57
            +H H  + GL     +   + LM  Y  C      G +   ++    L+ RN + +N +
Sbjct: 269 TIHGHALKAGLSTDVFV--SNALMACYAKC------GCIEQSMELFEALSDRNDVSWNTI 320

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I  + + G    AL  FS M  + +        S L A  ++     G QV     K+ +
Sbjct: 321 IVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIY 380

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
              V VG+ALID+YAK   I DA  MFD + +++ V  NA++ GY    L    +++  L
Sbjct: 381 GQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNL 440

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYG 235
           M       D  T   +L AC+     + G+Q    M +   + G +  M+  + ++ + G
Sbjct: 441 MKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQ---DYGIEPCMEHYTCMVWLMG 497

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           + G + +A++         +      V++W ++LG
Sbjct: 498 RSGNLDQAVKFIE------DIPFEPSVMIWRALLG 526


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  241 bits (614), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 237/448 (52%), Gaps = 22/448 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VH    + G L  C +  Q+ L+  Y+ C      G + + +     R+ + +  +IS 
Sbjct: 126 QVHGVAVKMGFL--CDLYVQNSLLHFYSVCGKWGGAGRVFDEMLV---RDVVSWTGLISG 180

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + R G    A+  F  M V     +     S L A   +     GK V   V K  +   
Sbjct: 181 YVRTGLFDEAINLFLKMDV---VPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIG 237

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           + VG+AL+D+Y K   + +A  +FDE+P ++ V   +++SG  + K     LEL   M  
Sbjct: 238 LVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQI 297

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G++ D   L+++L ACA L A ++GR V  Y+ R+   +  D+ + ++L++MY KCG +
Sbjct: 298 SGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQ--GIEWDIHIGTALVDMYAKCGCI 355

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             AL +FN       G  N+++  W ++LG    +G+  E +K +E M+  G +P+EV F
Sbjct: 356 EMALHIFN-------GIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTF 408

Query: 301 VTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           + +++AC H+G V  G  YF  M+   +   P  EHY C++DLLCRAG LD+A+K I  M
Sbjct: 409 LAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNM 468

Query: 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419
                    V +WGALLSAC   G  EL +      LEL   + G+YV+LSN+YA    W
Sbjct: 469 ----PLPPDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERW 524

Query: 420 DEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           D++ ++R LMK+KG++K  G S IEV G
Sbjct: 525 DDVTRVRRLMKDKGIRKFPGSSVIEVDG 552



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 189/419 (45%), Gaps = 37/419 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRN----PLPFNV 56
            +HAH   +GLL           +L   +    K++G +     FLN  +     LP+N 
Sbjct: 23  QIHAHLIASGLL-------HDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNT 75

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +I+ +  + +P  A   +  +  +G   D Y     L A T     + G+QV     K G
Sbjct: 76  LIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMG 135

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           +L  ++V ++L+  Y+       A  +FDE+ V++ V    L+SGY    L+    E + 
Sbjct: 136 FLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFD---EAIN 192

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
           L   + +  +  T  ++L AC  +     G+ VH  + ++   +G  + + ++L++MY K
Sbjct: 193 LFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIG--LVVGNALVDMYVK 250

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           C  + +A ++F+    R       D+V WTS++    +    K+ ++L+  M ++G +PD
Sbjct: 251 CECLCEARKLFDELPDR-------DIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPD 303

Query: 297 EVAFVTVISACSHTGQVKLG---IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            +   +V+SAC+  G +  G    EY E    ++ +  G    + LVD+  + G ++ A 
Sbjct: 304 RIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIG----TALVDMYAKCGCIEMAL 359

Query: 354 KLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            + N + +R     ++  W ALL   A H  G   L          + P+ V    +L+
Sbjct: 360 HIFNGIPNR-----NIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILT 413



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 127/288 (44%), Gaps = 22/288 (7%)

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF---DEIPVKNSVCAN 156
           K  R  KQ+ AH+  SG L   FV S + + + K +   D    F    ++ V  ++  N
Sbjct: 16  KTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHV-GTLPYN 74

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
            L++ Y  +        +   +   G   D +T   +L+AC      + G QVH   ++ 
Sbjct: 75  TLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKM 134

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
                 D+++Q+SL+  Y  CG    A +VF       +  + +DVV WT ++  Y R G
Sbjct: 135 --GFLCDLYVQNSLLHFYSVCGKWGGAGRVF-------DEMLVRDVVSWTGLISGYVRTG 185

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
            F E I L+  M      P+   FV+V+ AC   G + +G +    +V+      G    
Sbjct: 186 LFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMG-KGVHGLVYKRAFGIGLVVG 241

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           + LVD+  +   L +A KL +E+ DR      +  W +++S    C +
Sbjct: 242 NALVDMYVKCECLCEARKLFDELPDR-----DIVSWTSIISGLVQCKQ 284


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  240 bits (613), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 136/415 (32%), Positives = 225/415 (54%), Gaps = 20/415 (4%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G        +  R+ + ++ +++ F   G PL A++ +  M   G+  D   +   + A
Sbjct: 159 MGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
            T+ ++ R G  V  H+ + G    V   ++L+D+YAK  L+  A  +F  +  +N V  
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           +A++SG+ +       L L R M A G+  D   L + L AC+ +   + GR VH +++R
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338

Query: 216 K---CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           +    C LG      ++ I+MY KCG +  A  +FN+   R       D++LW +M+   
Sbjct: 339 RFDFNCILG------TAAIDMYSKCGSLASAQMLFNMISDR-------DLILWNAMIACC 385

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           G +G  ++ + L++ M   G +PD   F +++SA SH+G V+ G  +F  MV+ +K+ P 
Sbjct: 386 GAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPA 445

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
            +HY CLVDLL R+G +++A  L+  M        +V++W ALLS C +  K ELG+  A
Sbjct: 446 EKHYVCLVDLLARSGLVEEASDLLTSM----KAEPTVAIWVALLSGCLNNKKLELGESIA 501

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
              LEL P +VG+  ++SNLYA    WD++ Q+R+LMK+ G KK  GCS IE+ G
Sbjct: 502 DNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRG 556



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 169/357 (47%), Gaps = 29/357 (8%)

Query: 63  RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF 122
           R GSP  AL+ F  +       D+     +L+A   + D R G+ V+     +G+   VF
Sbjct: 86  RRGSPASALRVFRALP-PAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           V S+L+ LYA+   + DA  +F  +P ++ V  + +++G+  A      +++ R M   G
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG 204

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D   +  +++AC        G  VH +++R    +  DV   +SL++MY K GL+  
Sbjct: 205 VKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRM--DVVTATSLVDMYAKNGLLDV 262

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A +VF L  HR +       V W++M+  + +NG   E ++L+  M  +G +PD  A V+
Sbjct: 263 ACRVFGLMVHRND-------VSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVS 315

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL-----VDLLCRAGELDKAWKLIN 357
            + ACS+ G +KLG     ++V  +        ++C+     +D+  + G L  A  L N
Sbjct: 316 ALLACSNIGFLKLGRSVHGFIVRRFD-------FNCILGTAAIDMYSKCGSLASAQMLFN 368

Query: 358 EMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
            + DR      + +W A+++ C  H  G+  L          + P +     +LS L
Sbjct: 369 MISDR-----DLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSAL 420


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 146/417 (35%), Positives = 232/417 (55%), Gaps = 27/417 (6%)

Query: 37  GTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTA 95
           G   N    +  RN   +N  IS+  ++   L A+  F  F+ VHG   ++   C+ L A
Sbjct: 160 GDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHG-EPNSITFCAFLNA 218

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
              +     G+Q+ A + + G+   V V + LID Y K   I  AE++F+ I  + +V +
Sbjct: 219 CVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVS 278

Query: 156 -----NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
                 AL+  + E +       +V L     ++   F +S++L ACA L   E GR VH
Sbjct: 279 WCSMLAALVQNHEEERAC-----MVFLQARKEVEPTDFMISSVLSACAELGGLELGRSVH 333

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           A  ++ C  + +++F+ S+L++MYGKCG +  A QVF+    R       ++V W +M+G
Sbjct: 334 ALAVKAC--VEDNIFVGSALVDMYGKCGSIENAEQVFSELPER-------NLVTWNAMIG 384

Query: 271 VYGRNGYFKEVIKLYEAMLM--NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
            Y   G     ++L+E M +  +G +P  V  ++++S CS  G V+ GI+ FE M  +Y 
Sbjct: 385 GYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYG 444

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           +EPG EH++C+VDLL R+G +D+A++ I  M  +     ++S+WGALL AC   GK ELG
Sbjct: 445 IEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQ----PTISVWGALLGACRMHGKTELG 500

Query: 389 KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           K+AA+K  ELD  + G +V+LSN+ A    W+E   +R+ MK+ G+KK+VG SWI V
Sbjct: 501 KIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAV 557



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 159/357 (44%), Gaps = 23/357 (6%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           L +  + L   + R  + +  +IS    N   L AL  F+ M    +  + +       A
Sbjct: 58  LNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKA 117

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
           S  V+    GKQ+     K G +  VFVG +  D+Y K     DA  MFDE+P +N    
Sbjct: 118 SAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATW 177

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           NA +S   + +     +   +    +  + +  T  A L AC  +     GRQ+HA+++R
Sbjct: 178 NAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVR 237

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
             C    DV + + LI+ YGKCG +  A  VFN  G+R      K+VV W SML    +N
Sbjct: 238 --CGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNR------KNVVSWCSMLAALVQN 289

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
            + +E   +         +P +    +V+SAC+  G ++LG       VH   ++   E 
Sbjct: 290 -HEEERACMVFLQARKEVEPTDFMISSVLSACAELGGLELGRS-----VHALAVKACVED 343

Query: 336 Y----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
                S LVD+  + G ++ A ++ +E+ +R     ++  W A++      G  ++ 
Sbjct: 344 NIFVGSALVDMYGKCGSIENAEQVFSELPER-----NLVTWNAMIGGYAHQGDIDMA 395



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 158/382 (41%), Gaps = 50/382 (13%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEI 147
           L S L ++ S   +  G+ + AH+ ++       F+ + L+++Y+KL L++ A+ +    
Sbjct: 9   LGSLLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLT 68

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
            ++  V   +L+SG    + +   L     M    +  + FT   + +A A +     G+
Sbjct: 69  HLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGK 128

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q+H   ++    +  DVF+  S  +MY K G    A  +F+    R       ++  W +
Sbjct: 129 QIHGLALKG--GMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQR-------NLATWNA 179

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-D 326
            +    ++    + I  ++  L    +P+ + F   ++AC    ++ LG +   ++V   
Sbjct: 180 YISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCG 239

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL----------- 375
           YK +      + L+D   + G++  A  + N + +R +  S  SM  AL           
Sbjct: 240 YKEDVSVA--NGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACM 297

Query: 376 -------------------LSACHDCGKFELGK----LAAQKALELDPHNVGIYVMLSNL 412
                              LSAC + G  ELG+    LA +  +E    N+ +   L ++
Sbjct: 298 VFLQARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVE---DNIFVGSALVDM 354

Query: 413 YAKFCMWDEIGQLRELMKEKGL 434
           Y K    +   Q+   + E+ L
Sbjct: 355 YGKCGSIENAEQVFSELPERNL 376


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 149/432 (34%), Positives = 248/432 (57%), Gaps = 24/432 (5%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTF 74
           I  + LM  Y+ C      G + +  K  +    R+ + +N ++    +NG    AL  F
Sbjct: 56  ITSNMLMNMYSKC------GLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLF 109

Query: 75  SFMHVHGIFLDTYALCSSLTASTSVKDARFG-KQVQAHVTKSGWLSSVFVGSALIDLYAK 133
             M   G     + + SS+  + + K   F  KQ+     K+   S+VFVG+AL+D+YAK
Sbjct: 110 MQMQKEGTSCSEFTV-SSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAK 168

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
             L+ DA L+F+ +P ++ V  +++++GY + +L+   L L     A+GL+++ FT+S+ 
Sbjct: 169 CGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSA 228

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA  +A   G+QV A   +    +G+++F+ SSLI+MY KCG++ +A  VF+     
Sbjct: 229 LSACAARAALIEGKQVQAVSCKT--GIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVE-- 284

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                 K+VVLW ++L  + R+    E +  +E M   G  P+++ +++V+SACSH G V
Sbjct: 285 -----EKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLV 339

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G +YF+ M+  + + P   HYSC+VD+L RAG L +A     + +DR    ++ SMWG
Sbjct: 340 EKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEA----KDFIDRMPFDATASMWG 395

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           +LL++C      EL ++AA+   E++PHN G +V+LSN+YA    W+E+ + R L+KE  
Sbjct: 396 SLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESK 455

Query: 434 LKKDVGCSWIEV 445
            KK+ G SWIE+
Sbjct: 456 AKKERGKSWIEI 467



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 136/287 (47%), Gaps = 19/287 (6%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L +S   + A  G    A + + G  +     + L+++Y+K  L+  A  +FDE+PV++ 
Sbjct: 27  LQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSL 86

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  N ++  + +       L L   M   G     FT+S+++ ACA        +Q+H +
Sbjct: 87  VSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGF 146

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            ++    L ++VF+ ++L+++Y KCGLV  A  VF     R +       V W+SM+  Y
Sbjct: 147 ALKTA--LDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD-------VTWSSMVAGY 197

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            +N  ++E + L+      G + ++    T+ SA S        IE  +      K   G
Sbjct: 198 VQNELYEEALVLFHRAQAMGLEHNQ---FTISSALSACAARAALIEGKQVQAVSCKTGIG 254

Query: 333 PEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
              +  S L+D+  + G +++A+ + + + ++     +V +W A+LS
Sbjct: 255 SNIFVISSLIDMYAKCGIIEEAYTVFSSVEEK-----NVVLWNAILS 296


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 147/428 (34%), Positives = 240/428 (56%), Gaps = 20/428 (4%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78
            ++ LM+ Y+ C    +   L  C+     +N + +  +IS + +NG    A+  F  M 
Sbjct: 331 IKTALMVAYSKCSEIDDAFKLF-CM-MHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMR 388

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
             G+  + +   + LTA+ +V  +    Q+ A V K+ + +S  VG+AL D Y+K+   +
Sbjct: 389 REGVRPNHFTYSTILTANAAVSPS----QIHALVVKTNYENSPSVGTALSDSYSKIGDAN 444

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           +A  +F+ I  K+ V  +A+LSGY +     G +++   +   G++ + FT S++L ACA
Sbjct: 445 EAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACA 504

Query: 199 GLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
             +A+ E G+Q H+  I+      N + + S+L+ MY K G +  A +VF       + +
Sbjct: 505 APTASVEQGKQFHSCSIKS--GFSNALCVSSALVTMYAKRGNIESANEVF-------KRQ 555

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
           +++D+V W SM+  Y ++G  K+ +K++E M     + D + F+ VISAC+H G V  G 
Sbjct: 556 VDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQ 615

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            YF+ MV DY + P  EHYSC+VDL  RAG L+KA  LIN+M       +  ++W  LL+
Sbjct: 616 RYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKM----PFPAGATIWRTLLA 671

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           AC      +LG+LAA+K + L P +   YV+LSN+YA    W E  ++R+LM  K +KK+
Sbjct: 672 ACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKE 731

Query: 438 VGCSWIEV 445
            G SWIEV
Sbjct: 732 AGYSWIEV 739



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 160/334 (47%), Gaps = 22/334 (6%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N ++ +F RN     AL  F  +   G   D  +L   L     + D   GKQV     K
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIK 120

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            G++  V VG++L+D+Y K   + D E +FDE+ VKN V   +LL+GY +  L    L+L
Sbjct: 121 CGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKL 180

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              M   G+  + FT +A+L   A   A E G QVH  +I+    L + +F+ +S++ MY
Sbjct: 181 FSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS--GLDSTIFVGNSMVNMY 238

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            K  +V+ A  VF+     +E   N++ V W SM+  +  NG   E  +L+  M + G K
Sbjct: 239 SKSLMVSDAKAVFD----SME---NRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELD 350
             +  F TVI  C++  ++      F   +H   ++ G +      + L+    +  E+D
Sbjct: 292 LTQTIFATVIKLCANIKEMS-----FAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEID 346

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            A+KL   M    HG  +V  W A++S     G+
Sbjct: 347 DAFKLFCMM----HGVQNVVSWTAIISGYVQNGR 376



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 166/338 (49%), Gaps = 18/338 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +  +++ + +NG    ALK FS M + GI  + +   + L    +      G QV
Sbjct: 156 KNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQV 215

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V KSG  S++FVG++++++Y+K L++ DA+ +FD +  +N+V  N++++G+    L 
Sbjct: 216 HTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLD 275

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
               EL   M   G+       + +++ CA +    F +Q+H  +I+   +   D+ +++
Sbjct: 276 LEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF--DLNIKT 333

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+  Y KC  +  A ++F +  H ++     +VV WT+++  Y +NG     + L+  M
Sbjct: 334 ALMVAYSKCSEIDDAFKLFCMM-HGVQ-----NVVSWTAIISGYVQNGRTDRAMNLFCQM 387

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G +P+   + T+++A +     ++       +V     E  P   + L D   + G+
Sbjct: 388 RREGVRPNHFTYSTILTANAAVSPSQI-----HALVVKTNYENSPSVGTALSDSYSKIGD 442

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            ++A K+  E++D       +  W A+LS     G  E
Sbjct: 443 ANEAAKIF-ELIDE----KDIVAWSAMLSGYAQMGDIE 475


>gi|242039301|ref|XP_002467045.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
 gi|241920899|gb|EER94043.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
          Length = 564

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 138/395 (34%), Positives = 223/395 (56%), Gaps = 15/395 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQ 107
           R+ + +  +I  + +NGS   A+  F  M   G+   D +  CS+L+AS  +KD  FG+ 
Sbjct: 183 RDAVTWTTMIDGYAKNGSLKAAILAFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRS 242

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAK 166
           +   + K+G+     V +AL+D+YAK   +  A  +    P   N V   +L+ GY E  
Sbjct: 243 LHCCIIKAGFELETVVRNALLDMYAKSGDLESASRVVKIDPGGWNVVSGTSLIDGYIEVD 302

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                LE    +   G++ + FT +++++ CA     E G Q+HA +I+   +L +D F+
Sbjct: 303 RIEEALETYTELGRQGVEPNEFTFASMIKGCAMQDLLEQGAQLHAQVIKT--SLISDSFV 360

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            S+L+ MYGKCGL++ +LQ+FN  G+  E       V W +++ VY ++G+    I+ ++
Sbjct: 361 GSTLVYMYGKCGLISLSLQLFNEIGYHSE-------VAWNAVINVYAQHGHGWGAIQAFD 413

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M  +G +P+ + FV +++ACSH G V  G+EYF  M   + +EP  EHYSC++D+  RA
Sbjct: 414 RMTASGIRPNHITFVCLLTACSHAGLVDEGLEYFYSMKDAHGIEPKEEHYSCIIDMYGRA 473

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G LD+A K I+EM  + +       W +LL AC   G  ELG++AAQ  ++LDP N GI+
Sbjct: 474 GRLDEAEKFISEMPVKPNAYG----WCSLLGACRMRGNKELGEIAAQNLMKLDPDNTGIH 529

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCS 441
           V LS +YA    W++   +R+LMK+  +K   G S
Sbjct: 530 VSLSGIYASLGQWEDAKSVRKLMKDSSIKNLPGFS 564



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 167/367 (45%), Gaps = 18/367 (4%)

Query: 48  PR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PR NP+ +  ++S   +N     AL  F+ M    +    +AL S+  A+ ++   R G 
Sbjct: 80  PRPNPVSWTTLVSGLVQNSMHHDALAAFAAMRRAHVAPTQFALSSAARAAAALSAPRPGT 139

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+    T+ G+ + +FV S L D+Y+K  L+ +A  +FD++P +++V    ++ GY +  
Sbjct: 140 QLHCIGTRFGFDTELFVASNLADMYSKCGLLDEACRVFDQMPHRDAVTWTTMIDGYAKNG 199

Query: 167 LWAGGLELVRLMPALGL-DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                +   R M   GL   D     + L A  GL    FGR +H  +I+    L  +  
Sbjct: 200 SLKAAILAFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFEL--ETV 257

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           ++++L++MY K G +  A +V  +      G  N  VV  TS++  Y      +E ++ Y
Sbjct: 258 VRNALLDMYAKSGDLESASRVVKID----PGGWN--VVSGTSLIDGYIEVDRIEEALETY 311

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             +   G +P+E  F ++I  C+    ++ G +    ++    L       S LV +  +
Sbjct: 312 TELGRQGVEPNEFTFASMIKGCAMQDLLEQGAQLHAQVIKT-SLISDSFVGSTLVYMYGK 370

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNV 403
            G +  + +L NE+     G  S   W A+++  A H  G   +       A  + P+++
Sbjct: 371 CGLISLSLQLFNEI-----GYHSEVAWNAVINVYAQHGHGWGAIQAFDRMTASGIRPNHI 425

Query: 404 GIYVMLS 410
               +L+
Sbjct: 426 TFVCLLT 432



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 124/262 (47%), Gaps = 20/262 (7%)

Query: 101 DARFGKQVQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           D R G+ + A +  +G   +S F+ + LI +Y+       A  +F  +P  N V    L+
Sbjct: 32  DIRRGRALHARLLLTGAAATSTFLANHLITMYSYCADAASAVRVFGVLPRPNPVSWTTLV 91

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           SG  +  +    L     M    +    F LS+  RA A LSA   G Q+H    R    
Sbjct: 92  SGLVQNSMHHDALAAFAAMRRAHVAPTQFALSSAARAAAALSAPRPGTQLHCIGTR--FG 149

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
              ++F+ S+L +MY KCGL+ +A +VF+   HR       D V WT+M+  Y +NG  K
Sbjct: 150 FDTELFVASNLADMYSKCGLLDEACRVFDQMPHR-------DAVTWTTMIDGYAKNGSLK 202

Query: 280 EVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS- 337
             I  +  M   G    D+  F + +SA   +G +K G  +F   +H   ++ G E  + 
Sbjct: 203 AAILAFRDMKCEGLVGADQHVFCSALSA---SGGLKDG--WFGRSLHCCIIKAGFELETV 257

Query: 338 ---CLVDLLCRAGELDKAWKLI 356
               L+D+  ++G+L+ A +++
Sbjct: 258 VRNALLDMYAKSGDLESASRVV 279


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 222/401 (55%), Gaps = 13/401 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +I+ + ++G    AL  F+ M    +  +   + S L+A   ++    GK +
Sbjct: 222 KDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWI 281

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + V   G+  ++ + +AL+D+Y+K   I  A  +FD +  K+ +  N ++ GYC   L+
Sbjct: 282 GSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLY 341

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN--DVFM 226
              L L  +M    +  +  T  A+L ACA L A + G+ VHAY+ +     GN  +V +
Sbjct: 342 EEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSL 401

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +S+I MY KCG V  A QVF   G R        +  W +M+     NG+ +  + L+E
Sbjct: 402 WTSIIVMYAKCGCVEVAEQVFRSMGSR-------SLASWNAMISGLAMNGHAERALGLFE 454

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M+  G +PD++ FV V+SAC+  G V+LG  YF  M  DY + P  +HY C++DLL R+
Sbjct: 455 EMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARS 514

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G+ D+A  L+  M     G    ++WG+LL+AC   G+ E G+  A++  EL+P N G Y
Sbjct: 515 GKFDEAKVLMGNMEMEPDG----AIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAY 570

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           V+LSN+YA    WD++ ++R  + +KG+KK  GC+ IE+ G
Sbjct: 571 VLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDG 611



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 167/366 (45%), Gaps = 48/366 (13%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
            P N   +N +I       +P  +L  FS M   G++ +++   S   +    K     K
Sbjct: 88  QPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAK 147

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLY--------AKLLL---------------------- 136
           Q+ AH  K        V ++LI +Y        A+L+                       
Sbjct: 148 QLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEG 207

Query: 137 -IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
            + DA  +FDEIP K+ V  NA+++GY ++  +   L     M    +  +  T+ ++L 
Sbjct: 208 HVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLS 267

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC  L + E G+ + +++  +    G ++ + ++L++MY KCG +  A ++F       +
Sbjct: 268 ACGHLRSLELGKWIGSWVRDR--GFGKNLQLVNALVDMYSKCGEIGTARKLF-------D 318

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
           G  +KDV+LW +M+G Y     ++E + L+E ML     P++V F+ V+ AC+  G + L
Sbjct: 319 GMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDL 378

Query: 316 GIEYFEWMVHDYKLEPGPEH---YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           G     ++  + K      +   ++ ++ +  + G ++ A     E + R  GS S++ W
Sbjct: 379 GKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVA-----EQVFRSMGSRSLASW 433

Query: 373 GALLSA 378
            A++S 
Sbjct: 434 NAMISG 439



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 133/309 (43%), Gaps = 47/309 (15%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALI---------DLYAKLLLIHDAELMFDEIPVKNSVCAN 156
           KQ+ + + KSG  +++F  S LI         DL   L L H    +  + P  N    N
Sbjct: 42  KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHS---IHHQPP--NIFIWN 96

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
            L+  +         L L   M   GL  +  T  +L ++CA   A    +Q+HA+ ++ 
Sbjct: 97  TLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKL 156

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEIN---- 259
             +L   V   +SLI MY + G +  A  VF+             + G+  EG ++    
Sbjct: 157 ALHLHPHV--HTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARR 214

Query: 260 -------KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
                  KDVV W +M+  Y ++G F+E +  +  M      P++   V+V+SAC H   
Sbjct: 215 LFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRS 274

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           ++LG     W V D       +  + LVD+  + GE+  A KL + M D+      V +W
Sbjct: 275 LELGKWIGSW-VRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDK-----DVILW 328

Query: 373 GALLSA-CH 380
             ++   CH
Sbjct: 329 NTMIGGYCH 337



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 136/342 (39%), Gaps = 53/342 (15%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y+ C     +GT       +  ++ + +N +I  +C       AL  F  M    +  + 
Sbjct: 304 YSKC---GEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPND 360

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTK----SGWLSSVFVGSALIDLYAKLLLIHDAEL 142
               + L A  S+     GK V A++ K    +G +++V + +++I +YAK   +  AE 
Sbjct: 361 VTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQ 420

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F  +  ++    NA++SG          L L   M   G   D  T   +L AC     
Sbjct: 421 VFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGF 480

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            E G   H Y               SS+ + YG    ++  LQ +               
Sbjct: 481 VELG---HRYF--------------SSMNKDYG----ISPKLQHYG-------------- 505

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
                M+ +  R+G F E   L   M M   +PD   + ++++AC   GQV+ G EY   
Sbjct: 506 ----CMIDLLARSGKFDEAKVLMGNMEM---EPDGAIWGSLLNACRIHGQVEFG-EYVAE 557

Query: 323 MVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
            +  ++LEP     Y  L ++   AG  D   K+  ++ D+G
Sbjct: 558 RL--FELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKG 597


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/432 (33%), Positives = 234/432 (54%), Gaps = 17/432 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++  + L+  Y  C H   L   +   + +  RN + ++ ++  F   G  L A   F  
Sbjct: 268 VLVGTALLDMYAKCGH---LVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKD 324

Query: 77  MHVHGI-FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
           M   G+ FL   ++ S+L A  ++ D   GKQ+ A + KSG  + +  G++L+ +YAK  
Sbjct: 325 MLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAG 384

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
           LI  A  +FD++ VK++V  +AL+SGY +         + R M A  +  D  T+ +L+ 
Sbjct: 385 LIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIP 444

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC+ L+A + G+  H  +I +   + ++  + ++LI+MY KCG +  + Q+F++   R  
Sbjct: 445 ACSHLAALQHGKCGHGSVIVR--GIASETSICNALIDMYAKCGRIDLSRQIFDVMPAR-- 500

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
                D+V W +M+  YG +G  KE   L+  M     +PD+V F+ +ISACSH+G V  
Sbjct: 501 -----DIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTE 555

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G  +F  M H Y + P  EHY  +VDLL R G LD+A++ I  M  +    + V +WGAL
Sbjct: 556 GKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLK----ADVRVWGAL 611

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L AC      +LGK  +    +L P   G +V+LSN+++    +DE  ++R + KE+G K
Sbjct: 612 LGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFK 671

Query: 436 KDVGCSWIEVTG 447
           K  GCSWIE+ G
Sbjct: 672 KSPGCSWIEING 683



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 168/373 (45%), Gaps = 30/373 (8%)

Query: 16  LIIFQSRLMLPYTTCR--HKKNLGTLTNCLKFLNPRNPLP----FNVVISDFCRNGSPLY 69
           L+IF   +  P+  C+  H + +    +  + L  + P P    +N +I  +   G  L 
Sbjct: 53  LLIFMLNINFPHIICQIDHNRMICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALA 112

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
                S         + Y     L A +++ D R  + V  H  ++G  + +FV +AL+D
Sbjct: 113 LRLYRSLRRRRLPQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVD 172

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF- 188
           +YAK      A  +F  +P ++ V  NA+L+GY     ++  +  + LM       DH  
Sbjct: 173 VYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLM-----QDDHAP 227

Query: 189 ---TLSALLRACAGLSAAEFGRQVHAYMIRKCC--NLGNDVFMQSSLIEMYGKCGLVTKA 243
              TL ALL   A   A   GR VHAY +R C   +  + V + ++L++MY KCG +  A
Sbjct: 228 NASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYA 287

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG---TKPDEVAF 300
            +VF       E    ++ V W++++G +   G   E   L++ ML  G     P  VA 
Sbjct: 288 SRVF-------EAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVA- 339

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
            + + AC++   + LG +    ++    L       + L+ +  +AG +D+A  L ++M+
Sbjct: 340 -SALRACANLSDLCLG-KQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMV 397

Query: 361 DRGHGSSSVSMWG 373
            +   S S  + G
Sbjct: 398 VKDTVSYSALVSG 410


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 241/449 (53%), Gaps = 29/449 (6%)

Query: 1   NVHAHQFETGLL---LIC--LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFN 55
            +HAH  ++GL    L+C  LI F S+  LP  +          +   +    ++   ++
Sbjct: 75  QIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLS----------SQVFEESERKSSTTWS 124

Query: 56  VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
            VIS F +N  P+ A++ F  M    +  D +   S+  A   +     GK V   V K+
Sbjct: 125 SVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKT 184

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G+   VFVGS+L+D+YAK   I +A  +FDE+P +N V  + ++ GY +       + L 
Sbjct: 185 GYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLF 244

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           +     GLD + FTLS+++R C   +  E G+Q+H    +   +L    F+ SSLI +Y 
Sbjct: 245 KEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSG--FVGSSLISLYS 302

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCGL+  A +VF+      E  I K++ +W +ML    ++ + KE   L+  M   G +P
Sbjct: 303 KCGLIEGAYRVFD------EVPI-KNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRP 355

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           + + F+ V+ ACSH G V+ G +YF  M   Y++EPG +HY+ +VDLL RAG+L +A  +
Sbjct: 356 NFITFLCVLYACSHAGLVEEGKKYFALM-KKYEIEPGTQHYASMVDLLGRAGKLQEALSV 414

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
           I  M        + S+WGA ++ C   G  +L   AA K  EL   + G++VMLSN YA 
Sbjct: 415 IKGMPTE----PTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAA 470

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
              +++  + R++++++G+KK+ G SWIE
Sbjct: 471 AGRYEDAAKARKMLRDRGVKKETGLSWIE 499



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 140/291 (48%), Gaps = 15/291 (5%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           +C  L + T  +    G+Q+ AH+ KSG      V   LI+ Y+K  L   +  +F+E  
Sbjct: 57  ICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESE 116

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
            K+S   ++++S + + +     ++    M    L  D     +  +ACA L   + G+ 
Sbjct: 117 RKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKS 176

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           VH  +I+   ++  DVF+ SSL++MY KCG + +A  VF+   HR       +VV W+ M
Sbjct: 177 VHCLVIKTGYDV--DVFVGSSLVDMYAKCGDIKEARNVFDEMPHR-------NVVSWSGM 227

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y + G  +E ++L++  L+ G   ++    +VI  C     ++LG +    +     
Sbjct: 228 IYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELG-KQIHGLCFKTS 286

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
            +      S L+ L  + G ++ A+++ +E+  +  G     MW A+L AC
Sbjct: 287 YDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLG-----MWNAMLIAC 332


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 140/414 (33%), Positives = 222/414 (53%), Gaps = 18/414 (4%)

Query: 37  GTLTNCLKFLN---PRNPLPFNVVISDFCRNGS-PLYALKTFSFMHVHG-IFLDTYALCS 91
           G++ +C K  +     + + +  +I+ + +N +    A+  FS M   G +  + +   S
Sbjct: 319 GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS 378

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           +  A  ++ D R GKQV     K G  S+  V +++I ++ K   + DA+  F+ +  KN
Sbjct: 379 AFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKN 438

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N  L G C    +    +L+  +    L    FT ++LL   A + +   G Q+H+
Sbjct: 439 LVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHS 498

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            +++   +    V   ++LI MY KCG +  A +VFN          N++V+ WTSM+  
Sbjct: 499 QVVKLGLSCNQPVC--NALISMYSKCGSIDTASRVFNFME-------NRNVISWTSMITG 549

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           + ++G+   V++ +  M+  G KP+EV +V ++SACSH G V  G  +F  M  D+K++P
Sbjct: 550 FAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
             EHY+C+VDLLCRAG L  A++ IN M       + V +W   L AC      ELGKLA
Sbjct: 610 KMEHYACMVDLLCRAGLLTDAFEFINTM----PFQADVLVWRTFLGACRVHSNTELGKLA 665

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A+K LELDP+    Y+ LSN+YA    W+E  ++R  MKE+ L K+ GCSWIEV
Sbjct: 666 ARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEV 719



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 188/430 (43%), Gaps = 50/430 (11%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           ++    R+ + ++ +++ +  NG  L A+K F      G+  + Y   + + A ++    
Sbjct: 123 MRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFV 182

Query: 103 RFGKQVQAHVTKSG-WLSSVFVGSALIDLYAK-LLLIHDAELMFDEIPVKNSVCANALLS 160
             G+     + K+G + S V VG +LID++ K      +A  +FD++   N V    +++
Sbjct: 183 GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMIT 242

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
              +       +     M   G + D FTLS++  ACA L     G+Q+H++ IR    L
Sbjct: 243 RCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS--GL 300

Query: 221 GNDVFMQSSLIEMYGKC---GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN-G 276
            +DV  + SL++MY KC   G V    +VF+    R+E   +  V+ WT+++  Y +N  
Sbjct: 301 VDDV--ECSLVDMYAKCSADGSVDDCRKVFD----RME---DHSVMSWTALITGYMKNCN 351

Query: 277 YFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYF--------------- 320
              E I L+  M+  G  +P+   F +   AC +    ++G +                 
Sbjct: 352 LATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA 411

Query: 321 ----EWMVHDYKLEPGPE-----------HYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
                  V   ++E                Y+  +D  CR    ++A+KL++E+ +R  G
Sbjct: 412 NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELG 471

Query: 366 SSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH-NVGIYVMLSNLYAKFCMWDEIGQ 424
            S+ + + +LLS   + G    G+    + ++L    N  +   L ++Y+K    D   +
Sbjct: 472 VSAFT-FASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530

Query: 425 LRELMKEKGL 434
           +   M+ + +
Sbjct: 531 VFNFMENRNV 540



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 150/333 (45%), Gaps = 22/333 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + + ++I+   + G P  A++ F  M + G   D + L S  +A   +++   GKQ+ 
Sbjct: 233 NVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLH 292

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEIPVKNSVCANALLSGYCE-A 165
           +   +SG +    V  +L+D+YAK      + D   +FD +   + +   AL++GY +  
Sbjct: 293 SWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNC 350

Query: 166 KLWAGGLELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            L    + L   M   G ++ +HFT S+  +AC  LS    G+QV     ++   L ++ 
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR--GLASNS 408

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + +S+I M+ K   +  A + F       E    K++V + + L    RN  F++  KL
Sbjct: 409 SVANSVISMFVKSDRMEDAQRAF-------ESLSEKNLVSYNTFLDGTCRNLNFEQAFKL 461

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
              +           F +++S  ++ G ++ G E     V    L       + L+ +  
Sbjct: 462 LSEITERELGVSAFTFASLLSGVANVGSIRKG-EQIHSQVVKLGLSCNQPVCNALISMYS 520

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + G +D A ++ N M +R     +V  W ++++
Sbjct: 521 KCGSIDTASRVFNFMENR-----NVISWTSMIT 548



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 13/231 (5%)

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGL-DYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
           A+ L+  +  A    G +  + LM   G+   D  T S+LL++C        G+ VHA +
Sbjct: 29  ADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARL 88

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           I    ++  D  + +SLI +Y K G   KA  VF     R  G+  +DVV W++M+  YG
Sbjct: 89  IE--FDIEPDSVLYNSLISLYSKSGDSAKAEDVFETM--RRFGK--RDVVSWSAMMACYG 142

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            NG   + IK++   L  G  P++  +  VI ACS++  V +G     +++     E   
Sbjct: 143 NNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDV 202

Query: 334 EHYSCLVDLLCRA-GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
                L+D+  +     + A+K+ ++M        +V  W  +++ C   G
Sbjct: 203 CVGCSLIDMFVKGENSFENAYKVFDKM-----SELNVVTWTLMITRCMQMG 248



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 143/316 (45%), Gaps = 24/316 (7%)

Query: 70  ALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
           A+     M   GI  +D+    S L +    +D R GK V A + +        + ++LI
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 129 DLYAKLLLIHDAELMFDEIPV---KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY 185
            LY+K      AE +F+ +     ++ V  +A+++ Y         +++      LGL  
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC-GLVTKAL 244
           + +  +A++RAC+       GR    +++ K  +  +DV +  SLI+M+ K       A 
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLM-KTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           +VF+        E+N  VV WT M+    + G+ +E I+ +  M+++G + D+    +V 
Sbjct: 224 KVFDKMS-----ELN--VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVF 276

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA---GELDKAWKLINEMLD 361
           SAC+    + LG +   W +    ++   +    LVD+  +    G +D   K+ + M D
Sbjct: 277 SACAELENLSLGKQLHSWAIRSGLVD---DVECSLVDMYAKCSADGSVDDCRKVFDRMED 333

Query: 362 RGHGSSSVSMWGALLS 377
                 SV  W AL++
Sbjct: 334 H-----SVMSWTALIT 344


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 218/392 (55%), Gaps = 13/392 (3%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           + +IS +  NG    AL+ F ++    I  +   + S L    S+     G+Q+  +V +
Sbjct: 413 STMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLR 472

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           + +    +V SAL+D+YAK   +  +  +F ++  K+ V  N+++S + +       L+L
Sbjct: 473 NAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDL 532

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M   G+ Y++ T+SA L ACA L A  +G+++H   I+    +  D+F +S+LI+MY
Sbjct: 533 FRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKG--PIKADIFAESALIDMY 590

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG +  AL+VF       E   +K+ V W S++  YG +G  KE + L   M   G K
Sbjct: 591 AKCGNLELALRVF-------EFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYK 643

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           PD V F+ +ISAC+H G V+ G++ F+ M   Y + P  EH++C+VDL  R+G+LDKA +
Sbjct: 644 PDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQ 703

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
            I +M  +        +WGALL AC      EL  +A+Q+  +LDP N G YV++SN+ A
Sbjct: 704 FIADMPFK----PDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINA 759

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
               WD + ++R LMK+  + K  G SW++V 
Sbjct: 760 VAGRWDGVSKVRRLMKDNKILKIPGYSWVDVN 791



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 163/339 (48%), Gaps = 26/339 (7%)

Query: 46  LNPRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           L P++ L  +N +IS   +NG  + A   F  M   G   D+  L S L A T +   + 
Sbjct: 302 LMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQ 361

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK+V  ++ ++     VF+ SAL+D+Y K   +  A+ ++D     + V  + ++SGY  
Sbjct: 362 GKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVL 421

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             +    L++ R +    +  +  T++++L  CA ++A   G+Q+H Y++R         
Sbjct: 422 NGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYE--RKC 479

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           +++S+L++MY KCG +  +  +F            KD V W SM+  + +NG  +E + L
Sbjct: 480 YVESALMDMYAKCGRLDLSHYIFLKMSQ-------KDEVTWNSMISSFSQNGKPQEALDL 532

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-----SCL 339
           +  M M G K + +     +SAC+    +  G E     +H   ++ GP        S L
Sbjct: 533 FRQMCMEGIKYNNITISAALSACASLPAIYYGKE-----IHGVTIK-GPIKADIFAESAL 586

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +D+  + G L+ A ++   M D+   S     W +++SA
Sbjct: 587 IDMYAKCGNLELALRVFEFMPDKNEVS-----WNSIISA 620



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 169/367 (46%), Gaps = 30/367 (8%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           LG   +    +  R+ + +NV++    + G    A++ F  M   G   +   L   L+ 
Sbjct: 192 LGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSV 251

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
             +  D   G Q+ +   K G    V V + L+ +YAK   + DA  +F+ +P  + V  
Sbjct: 252 CATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTW 311

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           N ++SG  +  L+     L   M   G   D  TL +LL A   L+  + G++VH Y++R
Sbjct: 312 NGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVR 371

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
            C N+  DVF+ S+L+++Y KC  V  A  +++ A          DVV+ ++M+  Y  N
Sbjct: 372 NCVNM--DVFLVSALVDIYFKCRDVRMAQNLYDAAR-------AIDVVIGSTMISGYVLN 422

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G  +E ++++  +L    KP+ V   +V+  C+    + LG +     +H Y L    E 
Sbjct: 423 GMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQ-----IHGYVLRNAYER 477

Query: 336 Y----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
                S L+D+  + G LD +  +  +M  +   +     W +++S+    GK       
Sbjct: 478 KCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVT-----WNSMISSFSQNGK------- 525

Query: 392 AQKALEL 398
            Q+AL+L
Sbjct: 526 PQEALDL 532



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 145/314 (46%), Gaps = 15/314 (4%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNG----SPLYALK 72
           +   +RL+  Y   R  ++   + + L      + LP+N +I  F   G    + L+ +K
Sbjct: 70  LALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVK 129

Query: 73  TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
            +S  H      D + L   + +  ++     G+ V       G  + V+VGSAL+ +YA
Sbjct: 130 MWS--HPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYA 187

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
              L+ +A   FD IP ++ V  N ++ G  +A    G + L R M A G + +  TL+ 
Sbjct: 188 DAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLAC 247

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
            L  CA  +    G Q+H+  ++  C L  +V + ++L+ MY KC  +  A ++F L   
Sbjct: 248 FLSVCATDADLLSGAQLHSLAVK--CGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQ 305

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
                   D+V W  M+    +NG F E   L+  M  +G +PD +  V+++ A +    
Sbjct: 306 -------DDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNG 358

Query: 313 VKLGIEYFEWMVHD 326
           +K G E   ++V +
Sbjct: 359 LKQGKEVHGYIVRN 372



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 1/200 (0%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ ++ + +N +IS F +NG P  AL  F  M + GI  +   + ++L+A  S+    +G
Sbjct: 505 MSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYG 564

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++     K    + +F  SALID+YAK   +  A  +F+ +P KN V  N+++S Y   
Sbjct: 565 KEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAH 624

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    + L+  M   G   DH T  AL+ ACA     E G Q+   M +K   +   + 
Sbjct: 625 GLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYL-IAPRME 683

Query: 226 MQSSLIEMYGKCGLVTKALQ 245
             + ++++Y + G + KA+Q
Sbjct: 684 HFACMVDLYSRSGKLDKAIQ 703


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 140/414 (33%), Positives = 222/414 (53%), Gaps = 18/414 (4%)

Query: 37  GTLTNCLKFLN---PRNPLPFNVVISDFCRNGS-PLYALKTFSFMHVHG-IFLDTYALCS 91
           G++ +C K  +     + + +  +I+ + +N +    A+  FS M   G +  + +   S
Sbjct: 319 GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS 378

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           +  A  ++ D R GKQV     K G  S+  V +++I ++ K   + DA+  F+ +  KN
Sbjct: 379 AFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKN 438

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N  L G C    +    +L+  +    L    FT ++LL   A + +   G Q+H+
Sbjct: 439 LVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHS 498

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            +++   +    V   ++LI MY KCG +  A +VFN          N++V+ WTSM+  
Sbjct: 499 QVVKLGLSCNQPVC--NALISMYSKCGSIDTASRVFNFME-------NRNVISWTSMITG 549

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           + ++G+   V++ +  M+  G KP+EV +V ++SACSH G V  G  +F  M  D+K++P
Sbjct: 550 FAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
             EHY+C+VDLLCRAG L  A++ IN M       + V +W   L AC      ELGKLA
Sbjct: 610 KMEHYACMVDLLCRAGLLTDAFEFINTM----PFQADVLVWRTFLGACRVHSNTELGKLA 665

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A+K LELDP+    Y+ LSN+YA    W+E  ++R  MKE+ L K+ GCSWIEV
Sbjct: 666 ARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEV 719



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 188/430 (43%), Gaps = 50/430 (11%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           ++    R+ + ++ +++ +  NG  L A+K F      G+  + Y   + + A ++    
Sbjct: 123 MRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFV 182

Query: 103 RFGKQVQAHVTKSG-WLSSVFVGSALIDLYAK-LLLIHDAELMFDEIPVKNSVCANALLS 160
             G+     + K+G + S V VG +LID++ K      +A  +FD++   N V    +++
Sbjct: 183 GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMIT 242

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
              +       +     M   G + D FTLS++  ACA L     G+Q+H++ IR    L
Sbjct: 243 RCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS--GL 300

Query: 221 GNDVFMQSSLIEMYGKC---GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN-G 276
            +DV  + SL++MY KC   G V    +VF+    R+E   +  V+ WT+++  Y +N  
Sbjct: 301 VDDV--ECSLVDMYAKCSADGSVDDCRKVFD----RME---DHSVMSWTALITGYMKNCN 351

Query: 277 YFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYF--------------- 320
              E I L+  M+  G  +P+   F +   AC +    ++G +                 
Sbjct: 352 LATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA 411

Query: 321 ----EWMVHDYKLEPGPE-----------HYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
                  V   ++E                Y+  +D  CR    ++A+KL++E+ +R  G
Sbjct: 412 NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELG 471

Query: 366 SSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH-NVGIYVMLSNLYAKFCMWDEIGQ 424
            S+ + + +LLS   + G    G+    + ++L    N  +   L ++Y+K    D   +
Sbjct: 472 VSAFT-FASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530

Query: 425 LRELMKEKGL 434
           +   M+ + +
Sbjct: 531 VFNFMENRNV 540



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 150/333 (45%), Gaps = 22/333 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + + ++I+   + G P  A++ F  M + G   D + L S  +A   +++   GKQ+ 
Sbjct: 233 NVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLH 292

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEIPVKNSVCANALLSGYCE-A 165
           +   +SG +    V  +L+D+YAK      + D   +FD +   + +   AL++GY +  
Sbjct: 293 SWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNC 350

Query: 166 KLWAGGLELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            L    + L   M   G ++ +HFT S+  +AC  LS    G+QV     ++   L ++ 
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR--GLASNS 408

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + +S+I M+ K   +  A + F       E    K++V + + L    RN  F++  KL
Sbjct: 409 SVANSVISMFVKSDRMEDAQRAF-------ESLSEKNLVSYNTFLDGTCRNLNFEQAFKL 461

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
              +           F +++S  ++ G ++ G E     V    L       + L+ +  
Sbjct: 462 LSEITERELGVSAFTFASLLSGVANVGSIRKG-EQIHSQVVKLGLSCNQPVCNALISMYS 520

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + G +D A ++ N M +R     +V  W ++++
Sbjct: 521 KCGSIDTASRVFNFMENR-----NVISWTSMIT 548



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 13/231 (5%)

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGL-DYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
           A+ L+  +  A    G +  + LM   G+   D  T S+LL++C        G+ VHA +
Sbjct: 29  ADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARL 88

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           I    ++  D  + +SLI +Y K G   KA  VF     R  G+  +DVV W++M+  YG
Sbjct: 89  IE--FDIEPDSVLYNSLISLYSKSGDSAKAEDVFETM--RRFGK--RDVVSWSAMMACYG 142

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            NG   + IK++   L  G  P++  +  VI ACS++  V +G     +++     E   
Sbjct: 143 NNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDV 202

Query: 334 EHYSCLVDLLCRA-GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
                L+D+  +     + A+K+ ++M +      +V  W  +++ C   G
Sbjct: 203 CVGCSLIDMFVKGENSFENAYKVFDKMSEL-----NVVTWTLMITRCMQMG 248



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 144/316 (45%), Gaps = 24/316 (7%)

Query: 70  ALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
           A+     M   GI  +D+    S L +    +D R GK V A + +        + ++LI
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 129 DLYAKLLLIHDAELMFDEIPV---KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY 185
            LY+K      AE +F+ +     ++ V  +A+++ Y         +++      LGL  
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC-GLVTKAL 244
           + +  +A++RAC+       GR    +++ K  +  +DV +  SLI+M+ K       A 
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLM-KTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           +VF+        E+N  VV WT M+    + G+ +E I+ +  M+++G + D+    +V 
Sbjct: 224 KVFDKMS-----ELN--VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVF 276

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL--CRA-GELDKAWKLINEMLD 361
           SAC+    + LG +   W +    ++   +    LVD+   C A G +D   K+ + M D
Sbjct: 277 SACAELENLSLGKQLHSWAIRSGLVD---DVECSLVDMYAKCSADGSVDDCRKVFDRMED 333

Query: 362 RGHGSSSVSMWGALLS 377
                 SV  W AL++
Sbjct: 334 H-----SVMSWTALIT 344


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/445 (33%), Positives = 236/445 (53%), Gaps = 19/445 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           ++H + F +G     L+   + L+  Y  C   + +  L    K +  +  + +N +I  
Sbjct: 267 SIHGYAFRSGFE--SLVNVTNALLDMYFKCGSAR-IARLV--FKGMRSKTVVSWNTMIDG 321

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
             +NG    A  TF  M   G       +   L A  ++ D   G  V   + K    S+
Sbjct: 322 CAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSN 381

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           V V ++LI +Y+K   +  A  +F+ +  K +V  NA++ GY +       L L  +M +
Sbjct: 382 VSVMNSLISMYSKCKRVDIAASIFNNLE-KTNVTWNAMILGYAQNGCVKEALNLFCMMQS 440

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  D FTL  ++ A A  S     + +H   +R C  + N+VF+ ++L++MY KCG +
Sbjct: 441 QGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRAC--MDNNVFVSTALVDMYAKCGAI 498

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A ++F++   R        V+ W +M+  YG +G  KE + L+  M     KP+++ F
Sbjct: 499 KTARKLFDMMQER-------HVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITF 551

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           ++VISACSH+G V+ G+  F+ M  DY LEP  +HYS +VDLL RAG+LD AW  I EM 
Sbjct: 552 LSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMP 611

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +      +S+ GA+L AC      ELG+ AAQK  +LDP   G +V+L+N+YA   MWD
Sbjct: 612 IK----PGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWD 667

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
           ++ ++R  M++KGL K  GCSW+E+
Sbjct: 668 KVAKVRTAMEDKGLHKTPGCSWVEL 692



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 150/338 (44%), Gaps = 49/338 (14%)

Query: 57  VISDFCRNGSPLYALKTFSFMHV-----HGIFLDTYALCSSLTAS---------TSVK-- 100
           VIS FC+ GS   A + F  + +     + I L  YA  SSL  +           V+  
Sbjct: 85  VISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLV 144

Query: 101 ---------------DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
                          D + G+++   +  +G+ S++FV +A++ LYAK   I +A  MF+
Sbjct: 145 VGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFE 204

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
            +  K+ V    L++GY +       L+LV  M   G   D  TL ++L A A + A   
Sbjct: 205 RMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRI 264

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           GR +H Y  R      + V + ++L++MY KCG    A  VF       +G  +K VV W
Sbjct: 265 GRSIHGYAFRS--GFESLVNVTNALLDMYFKCGSARIARLVF-------KGMRSKTVVSW 315

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            +M+    +NG  +E    +  ML  G  P  V  + V+ AC++ G ++ G     W VH
Sbjct: 316 NTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG-----WFVH 370

Query: 326 ----DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
                 KL+      + L+ +  +   +D A  + N +
Sbjct: 371 KLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL 408


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 149/463 (32%), Positives = 240/463 (51%), Gaps = 50/463 (10%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S L+  Y+ C    N+         +  RN + +N +I+ + +NG  + ALK F  M   
Sbjct: 191 SALVDMYSKC---GNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLES 247

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIHD 139
            +  D   L S ++A  S+   + G++V A V K   L + + + +A +D+YAK   I +
Sbjct: 248 WVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKE 307

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAK----------------------LWAG------- 170
           A  +FD +P++N +   +++SGY  A                       L AG       
Sbjct: 308 ARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGEN 367

Query: 171 --GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG----NDV 224
              L L  L+    +   H+T + +L+ACA L+    G Q H ++++          +D+
Sbjct: 368 EEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDI 427

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ +SLI+MY KCG V +   VF          + +D V W +M+  + +NGY  E ++L
Sbjct: 428 FVGNSLIDMYVKCGCVEEGYLVFRKM-------MERDCVSWNAMIIGFAQNGYGNEALEL 480

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  ML +G KPD +  + V+SAC H G V+ G  YF  M  D+ + P  +HY+C+VDLL 
Sbjct: 481 FREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLG 540

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG L++A  +I EM  +     SV +WG+LL+AC       LGK  A+K  E++  N G
Sbjct: 541 RAGFLEEAKSIIEEMPVQ---PDSV-IWGSLLAACKVHRNITLGKYVAEKLFEVETSNSG 596

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            YV+LSN+YA+   W +   +R+LM+++G+ K  GCSWI++ G
Sbjct: 597 PYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPG 639



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 195/407 (47%), Gaps = 62/407 (15%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + +  R+   +N ++S F ++     AL  F+ MH  G  L+ Y   S L+A + + D 
Sbjct: 109 FRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDM 168

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             G Q+ + + KS  LS V++GSAL+D+Y+K   ++DA+ +FDE+  +N V  N+L++ Y
Sbjct: 169 NRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCY 228

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       L++ ++M    ++ D  TL++++ ACA LSA + G++VHA ++ K   L N
Sbjct: 229 EQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVV-KMDKLRN 287

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI----------- 258
           D+ + ++ ++MY KC  + +A  +F+             ++G+ +               
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMA 347

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            ++VV W +++  Y +NG  +E + L+  +      P    F  ++ AC+    + LG++
Sbjct: 348 ERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQ 407

Query: 319 -YFEWMVHDYKLEPGPEHY----SCLVDLLCRAG-------------ELD---------- 350
            +   + H +K + G E      + L+D+  + G             E D          
Sbjct: 408 AHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIG 467

Query: 351 --------KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
                   +A +L  EMLD G     ++M G +LSAC   G  E G+
Sbjct: 468 FAQNGYGNEALELFREMLDSGEKPDHITMIG-VLSACGHAGFVEEGR 513



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 149/320 (46%), Gaps = 40/320 (12%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V A V KSG+ + VF+ + LID YAK   + D   +FD++P +N    N++++G  +   
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 168 WAGGLELVRLMPAL-------------------------------GLDYDHFTLSALLRA 196
                 L R MP                                 G   + +T ++ L A
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+GL+    G Q+H+ + +  C   +DV++ S+L++MY KCG V  A QVF+  G R   
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPC--LSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDR--- 216

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               +VV W S++  Y +NG   E +K+++ ML +  +PDEV   +VISAC+    +K+G
Sbjct: 217 ----NVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVG 272

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            E    +V   KL       +  VD+  +   + +A  + + M  R   + +  + G  +
Sbjct: 273 QEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAM 332

Query: 377 SACHDCGKFELGKLAAQKAL 396
           +A     +    K+A +  +
Sbjct: 333 AASTKAARLMFTKMAERNVV 352


>gi|308081250|ref|NP_001182909.1| uncharacterized protein LOC100501193 [Zea mays]
 gi|238008118|gb|ACR35094.1| unknown [Zea mays]
          Length = 402

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/395 (34%), Positives = 226/395 (57%), Gaps = 15/395 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQ 107
           ++ + +  +I  + +NGS   A+  F  M   G+   D +  CS+L+AS  +KD  FG+ 
Sbjct: 21  KDAVTWTTMIDGYAKNGSLEAAILIFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRS 80

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAK 166
           +   + K+G+     V +AL+D+YAK   + +A  +    P   N V A +L+ GY EA 
Sbjct: 81  LHCCIIKAGFELETVVRNALLDMYAKSGDLENASRVVSIDPGGWNVVSATSLIDGYVEAG 140

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                LE    +   G++ + FT +++++ CA     E G Q+HA +++   NL +D F+
Sbjct: 141 RIEEALETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQGAQLHAQVLKT--NLISDSFV 198

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            S+L+ MYG CGL++ +LQ+FN  G+R E       + W +++ VY ++G+    I+ ++
Sbjct: 199 GSTLVYMYGNCGLISLSLQLFNEIGYRTE-------IAWNAVINVYAQHGHGWGAIQAFD 251

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M  +G +P+ + FV +++ACSH G V  G+ YF  M   + +EP  EHYSC++D+  RA
Sbjct: 252 RMTSSGIRPNHITFVCLLTACSHAGLVDEGLGYFHSMKDAHGIEPKAEHYSCIIDMYGRA 311

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G LD+A K I+EM  +     S   W +LL AC   G  ELG++AAQ  ++LDP+N GI+
Sbjct: 312 GRLDEAEKFISEMPVK----PSAYAWCSLLGACRMQGNKELGEVAAQNLMKLDPNNTGIH 367

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCS 441
           + LS +Y     W+++  +++ MK+  +KK  G S
Sbjct: 368 ISLSGIYTSLGQWEDVKAVKKSMKDISIKKLPGFS 402



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 9/180 (5%)

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL-DYDHF 188
           +Y+K  L+H+A  +FD++P K++V    ++ GY +       + + R M   GL   D  
Sbjct: 1   MYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNGSLEAAILIFRDMKCEGLVGADQH 60

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
              + L A  GL    FGR +H  +I+    L  +  ++++L++MY K G +  A +V +
Sbjct: 61  VFCSALSASGGLKDGWFGRSLHCCIIKAGFEL--ETVVRNALLDMYAKSGDLENASRVVS 118

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           +      G  N  VV  TS++  Y   G  +E ++ Y  +   G +P+E  F ++I  C+
Sbjct: 119 ID----PGGWN--VVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCA 172


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 143/419 (34%), Positives = 241/419 (57%), Gaps = 22/419 (5%)

Query: 36  LGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI----FLDTYA 88
           L T+ N  K  +    R    +N +       G     L+ +  M++ G+    F  TY 
Sbjct: 117 LDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYL 176

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           L + + +   V   + GK++ AH+ + G+ + V V + L+D+YA+   +  A  +FDE+P
Sbjct: 177 LKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMP 236

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAEFG 206
           VKN V  +A+++ Y +       LEL R M     D   +  T+ ++L+ACA  +A E G
Sbjct: 237 VKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQG 296

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           + +HAY++R+   L + + + S+LI MY +CG +     +F+    R+     KDVVLW 
Sbjct: 297 KLIHAYILRR--GLDSILPVISALITMYARCGKLESGQLIFD----RMH---KKDVVLWN 347

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           S++  YG +GY ++ IK++E M+ +G  P  ++F++V+ ACSHTG V+ G + FE MV +
Sbjct: 348 SLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKE 407

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           + ++P  EHY+C+VDLL RA  LD+A K+I ++           +WG+LL AC      E
Sbjct: 408 HGIQPSVEHYACMVDLLGRANRLDEAAKIIEDL----RIEPGPKVWGSLLGACRIHCHVE 463

Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L + A+++  +L+P N G YV+L+++YA+  MWDE+ ++++L+  + L+K  G SWIEV
Sbjct: 464 LAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEV 522



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 195/439 (44%), Gaps = 71/439 (16%)

Query: 46  LNPRNPLPFNV--VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
            NP  P   N   +I   C+ G+   AL   S  H       T   C  L  S + +++ 
Sbjct: 31  FNPSTPPNSNNNHLIQSLCKQGNLKQALYLLS--HESN---PTQQTCELLILSAARRNS- 84

Query: 104 FGKQVQAH--VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
               +  H  +   G+    F+ + LI+++++L  + +A  +FD+   +     NAL   
Sbjct: 85  LSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRA 144

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG----LSAAEFGRQVHAYMIRKC 217
              A      LEL   M  +G+  D FT + LL+AC      +S  + G+++HA+++R  
Sbjct: 145 LALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRH- 203

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
              G  V + ++L++MY + G V+ A  VF+      E  + K+VV W++M+  Y +NG 
Sbjct: 204 -GYGAHVHVMTTLMDMYARFGCVSYASAVFD------EMPV-KNVVSWSAMIACYAKNGK 255

Query: 278 FKEVIKLYEAMLMN--GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
             E ++L+  M++N   + P+ V  V+V+ AC+    ++ G      ++H Y L  G + 
Sbjct: 256 PYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGK-----LIHAYILRRGLDS 310

Query: 336 ----YSCLVDLLCRAGELD-------------------------------KAWKLINEML 360
                S L+ +  R G+L+                               KA K+  EM+
Sbjct: 311 ILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMI 370

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE---LDPHNVGIYVMLSNLYAKFC 417
           D G   S +S + ++L AC   G  E GK   +  ++   + P +V  Y  + +L  +  
Sbjct: 371 DHGFSPSHIS-FISVLGACSHTGLVEEGKKLFESMVKEHGIQP-SVEHYACMVDLLGRAN 428

Query: 418 MWDEIGQLRELMK-EKGLK 435
             DE  ++ E ++ E G K
Sbjct: 429 RLDEAAKIIEDLRIEPGPK 447


>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
          Length = 502

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 215/384 (55%), Gaps = 16/384 (4%)

Query: 67  PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSA 126
           P  A+K  S +   G+  D Y++ + L A    +DA  G  +     + G L++V V  A
Sbjct: 84  PDAAVKLVSRLVASGLRPDRYSVPAVLRACAESRDALLGSVLHGFAVRLGLLANVVVSGA 143

Query: 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR--LMPALGLD 184
           L+D+YAK   + DA  +FDE+P +++V  N +++GY  A      LEL R   + + G+ 
Sbjct: 144 LLDMYAKTGTLGDAGRVFDEMPERDAVAWNCMVTGYARAGRSEETLELFRKAQIESAGMA 203

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D   + ++L  CA       GR++H  M R C    +D  + ++LI+MYGKCG V  A 
Sbjct: 204 RDLRAVPSVLNVCADEGQLMKGREIHGRMAR-CLASSSDTVVGNALIDMYGKCGQVDGAQ 262

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            VF      +E    K+VV W+S++  YG +G  KE +++YE M+  G KP+ V FV+++
Sbjct: 263 AVFA----SME---EKNVVSWSSLISCYGVHGMGKEALRVYEEMVSVGVKPNCVTFVSIL 315

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM-LDRG 363
           S+CSH+G V  G   FE M   + +EP  +HY+C+VDLL RAG +++A  L+NEM ++ G
Sbjct: 316 SSCSHSGLVSDGRRIFESMRKVHAVEPTADHYACMVDLLGRAGAIEEAVGLVNEMPMEPG 375

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423
                 S+WGALLSAC      ++G++AA +  EL+  N   YV L  +Y      D + 
Sbjct: 376 -----ASLWGALLSACAIHNNVDVGEVAAYRLFELEEDNASNYVTLCGIYDAIGRSDSVA 430

Query: 424 QLRELMKEKGLKKDVGCSWIEVTG 447
            LR  M+E G+ K  GCSW+ V G
Sbjct: 431 GLRSRMRELGMVKTPGCSWVHVKG 454



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 139/311 (44%), Gaps = 22/311 (7%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G Q+ A     G L    + + L+ LY++   +H A  +FD +P  +    N LL+    
Sbjct: 25  GAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRAREVFDGMPSPSMHAYNVLLA---- 80

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           A      ++LV  + A GL  D +++ A+LRACA    A  G  +H + +R    L  +V
Sbjct: 81  ASPPDAAVKLVSRLVASGLRPDRYSVPAVLRACAESRDALLGSVLHGFAVR--LGLLANV 138

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            +  +L++MY K G +  A +VF+    R       D V W  M+  Y R G  +E ++L
Sbjct: 139 VVSGALLDMYAKTGTLGDAGRVFDEMPER-------DAVAWNCMVTGYARAGRSEETLEL 191

Query: 285 YEAMLMN--GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +    +   G   D  A  +V++ C+  GQ+  G E    M             + L+D+
Sbjct: 192 FRKAQIESAGMARDLRAVPSVLNVCADEGQLMKGREIHGRMARCLASSSDTVVGNALIDM 251

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDP 400
             + G++D A  +   M ++     +V  W +L+S    H  GK  L       ++ + P
Sbjct: 252 YGKCGQVDGAQAVFASMEEK-----NVVSWSSLISCYGVHGMGKEALRVYEEMVSVGVKP 306

Query: 401 HNVGIYVMLSN 411
           + V    +LS+
Sbjct: 307 NCVTFVSILSS 317



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 28/180 (15%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN---DVFMQSSLIEMYGKCGLVTKALQV 246
           LSALLR CA   A   G Q+HA  +     +G    D  + + L+ +Y +CG + +A +V
Sbjct: 9   LSALLRRCAASGALSPGAQLHAQAL-----VGGRLPDTTLDTDLVLLYSRCGALHRAREV 63

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           F+       G  +  +  +  +L     +      +KL   ++ +G +PD  +   V+ A
Sbjct: 64  FD-------GMPSPSMHAYNVLLAASPPDA----AVKLVSRLVASGLRPDRYSVPAVLRA 112

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           C+ +    LG      ++H + +  G          L+D+  + G L  A ++ +EM +R
Sbjct: 113 CAESRDALLG-----SVLHGFAVRLGLLANVVVSGALLDMYAKTGTLGDAGRVFDEMPER 167


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 227/403 (56%), Gaps = 13/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+ L  ++ + +  +I+ + ++     AL  F  M   GI+ D   L S+++    +   
Sbjct: 403 LEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAM 462

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G Q+ A +  SG+   V + +AL++LYA+   I +A   F+E+ +K+ +  N L+SG+
Sbjct: 463 RQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGF 522

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            ++ L    L++   M   G+ ++ FT  + L A A L+  + G+Q+HA +I+   +   
Sbjct: 523 AQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFET 582

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +V   ++LI +YGKCG    A   F+    R E       V W +++    ++G   E +
Sbjct: 583 EV--GNALISLYGKCGSFEDAKMEFSEMSERNE-------VSWNTIITSCSQHGRGLEAL 633

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L++ M   G KP++V F+ V++ACSH G V+ G+ YF+ M  +Y + P P+HY+C++D+
Sbjct: 634 DLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDI 693

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
             RAG+LD+A K I EM      ++   +W  LLSAC      E+G+ AA+  LEL+PH+
Sbjct: 694 FGRAGQLDRAKKFIEEMPI----AADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHD 749

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              YV+LSN YA    W    Q+R++M+++G++K+ G SWIEV
Sbjct: 750 SASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEV 792



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 183/369 (49%), Gaps = 21/369 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+ + +  ++S + +NG    AL  +  MH  G+    Y L S L++ T  +    G
Sbjct: 103 LSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + + A   K G+ S +FVG+A+I LY +      AE +F ++P +++V  N L+SG+ + 
Sbjct: 163 RLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC 222

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 LE+   M   GL  D  T+S+LL ACA L   + G Q+H+Y+ +    + +D  
Sbjct: 223 GHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFK--AGISSDYI 280

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           M+ SL+++Y KCG V  AL +FN +          +VVLW  ML  +G+     +  +L+
Sbjct: 281 MEGSLLDLYVKCGDVETALVIFNSSDR-------TNVVLWNLMLVAFGQINDLAKSFELF 333

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVD 341
             M   G +P++  +  ++  C+ T ++ LG +     +H   ++ G E        L+D
Sbjct: 334 CQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ-----IHSLSVKTGFESDMYVSGVLID 388

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           +  + G L+KA +++ EML      S  SM    +   H+C K  L      +   + P 
Sbjct: 389 MYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGYVQ--HECCKDALAAFKEMQKCGIWPD 445

Query: 402 NVGIYVMLS 410
           N+G+   +S
Sbjct: 446 NIGLASAIS 454



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 179/390 (45%), Gaps = 32/390 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPR---NPLPFNVV 57
            +H++ F+ G+      I +  L+  Y  C      G +   L   N     N + +N++
Sbjct: 265 QLHSYLFKAGI--SSDYIMEGSLLDLYVKC------GDVETALVIFNSSDRTNVVLWNLM 316

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           +  F +      + + F  M   GI  + +     L   T  ++   G+Q+ +   K+G+
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            S ++V   LID+Y+K   +  A  + + +  K+ V   ++++GY + +     L   + 
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  D+  L++ +  CAG++A   G Q+HA +         DV + ++L+ +Y +C
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY--VSGYSGDVSIWNALVNLYARC 494

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G + +A   F       E E+ KD +    ++  + ++G  +E +K++  M  +G K + 
Sbjct: 495 GRIREAFSSFE------EMEL-KDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMV---HDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
             FV+ +SA ++  ++K G +    ++   H ++ E G    + L+ L  + G  + A  
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVG----NALISLYGKCGSFEDAKM 603

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGK 384
             +EM +R   S     W  ++++C   G+
Sbjct: 604 EFSEMSERNEVS-----WNTIITSCSQHGR 628



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 136/277 (49%), Gaps = 25/277 (9%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++ A     G      VG+ LIDLY+K  L+  A  +F+E+  +++V   A+LSGY +  
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L    L L R M   G+    + LS++L +C        GR +HA   +      +++F+
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKH--GFCSEIFV 180

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +++I +Y +CG    A +VF    HR       D V + +++  + + G+ +  ++++E
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHR-------DTVTFNTLISGHAQCGHGEHALEIFE 233

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-----DYKLEPGPEHYSCLVD 341
            M  +G  PD V   ++++AC+  G ++ G +   ++       DY +E        L+D
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIME------GSLLD 287

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           L  + G+++ A  + N   DR    ++V +W  +L A
Sbjct: 288 LYVKCGDVETALVIFNSS-DR----TNVVLWNLMLVA 319


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 145/400 (36%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI-FLDTYALCSSLTASTSVKDARFGKQ 107
           RN + ++ +I  F        A   F  M   G+ FL   ++ S+L A  S+   R G+Q
Sbjct: 302 RNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQ 361

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + A + KSG  + +  G++L+ +YAK  LI  A  +FDE+ VK++V  +AL+SGY +   
Sbjct: 362 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 421

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                 + + M A  ++ D  T+ +L+ AC+ L+A + GR  H  +I +   L ++  + 
Sbjct: 422 AEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR--GLASETSIC 479

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+MY KCG +  + QVFN+   R       D+V W +M+  YG +G  KE   L+  
Sbjct: 480 NALIDMYAKCGRIDLSRQVFNMMPSR-------DIVSWNTMIAGYGIHGLGKEATALFLE 532

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G  PD V F+ ++SACSH+G V  G  +F  M H Y L P  EHY C+VDLL R G
Sbjct: 533 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGG 592

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            LD+A++ I  M  R    + V +W ALL AC      +LGK  ++   EL P   G +V
Sbjct: 593 FLDEAYEFIQSMPLR----ADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 648

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+Y+    +DE  ++R + K +G KK  GCSWIE+ G
Sbjct: 649 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEING 688



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 152/334 (45%), Gaps = 41/334 (12%)

Query: 51  PLPFNVVISDFCR---NGSPLYA---LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           P P     +D  R   + SP  A   L  +  M  H +  + Y    +L A +++ D   
Sbjct: 84  PSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALADHHC 143

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+ +  H   +G  + +FV +AL+D+Y K   + DA  +F  +P ++ V  NA+L+GY  
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203

Query: 165 --------AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
                   A L +  +++ RL P      +  TL ALL   A   A   G  VHAY IR 
Sbjct: 204 HGMYHHAVAHLLSMQMQMHRLRP------NASTLVALLPLLAQQGALAQGTSVHAYRIRA 257

Query: 217 C--------CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           C          L + V + ++L++MY KCG +  A +VF+    R E       V W+++
Sbjct: 258 CLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE-------VTWSAL 310

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNG---TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           +G +       +   L++AML  G     P  +A  + + AC+    +++G E    ++ 
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG-EQLHALLA 367

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
              +       + L+ +  +AG +D+A  L +EM
Sbjct: 368 KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 401


>gi|225217011|gb|ACN85298.1| EMB2261 putative [Oryza coarctata]
          Length = 621

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 142/418 (33%), Positives = 229/418 (54%), Gaps = 20/418 (4%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALK-TFSFMHVHGIFLDTYALC 90
           H    G      + +   + + +  +IS F RN     A++ + S + ++G+  D     
Sbjct: 183 HAAAPGDARKAFEEMRTPDGICYTSLISAFVRNDWFEEAVRWSRSMLMLNGVRPDGCTFG 242

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S +TA  ++K    G+Q  A V   G   +V V S+ +D+YAK  +I +A  +FD + V+
Sbjct: 243 SMMTALGNLKMGNRGRQAHAQVVTRGLCGNVIVESSTLDMYAKCRMIVEARKVFDRMQVR 302

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N+V   ALL GYC+   +   + L R M     D D ++L  +LRACAGLS+   G+++H
Sbjct: 303 NAVSWCALLGGYCQNGEYEKVVALFREMDKD--DDDWYSLGTVLRACAGLSSVNPGKEIH 360

Query: 211 AYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
              +R    +G   +V ++S+L+++Y KCG V  A  VF       E  I ++ + W +M
Sbjct: 361 CRFLR----MGGWRNVVVESALVDLYAKCGAVDYAYGVF-------EASIVRNTITWNAM 409

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +G + +NG+ +  I L++ M+  G +PD ++FV V+ ACSHTG V+ G +YF  M  DY 
Sbjct: 410 IGGFAQNGHGERAIDLFDRMVKEGPRPDYISFVGVLFACSHTGMVEQGRKYFNSMSKDYS 469

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           + PG EHY+C+VDLL R   L++A  LIN+   R       S+W A+L A       ++ 
Sbjct: 470 ITPGIEHYNCMVDLLSRVELLEEAEDLINKSPFR----DDSSLWAAILGASATHSNPDVA 525

Query: 389 KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +  A+K +EL+P     YV+L N+Y     W++   +R LMK + +KK+ G SWI+V 
Sbjct: 526 ERVAKKTMELEPQYHLSYVLLENVYRTVGRWEDALDIRSLMKSRKVKKEPGMSWIDVN 583



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 154/339 (45%), Gaps = 23/339 (6%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYA 88
           R  ++L         L  R+ +  + +++ F R G P  AL +   M      +  + +A
Sbjct: 79  RLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALSSLRSMLAGADDVSPNAHA 138

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
             +++ A   ++D   G  +   +   G+     V SAL+D+Y       DA   F+E+ 
Sbjct: 139 FSAAVKACAVLRDRNAGACLHGSILVRGFGDDDIVLSALVDMYGHAAAPGDARKAFEEMR 198

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGR 207
             + +C  +L+S +     +   +   R M  L G+  D  T  +++ A   L     GR
Sbjct: 199 TPDGICYTSLISAFVRNDWFEEAVRWSRSMLMLNGVRPDGCTFGSMMTALGNLKMGNRGR 258

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q HA ++ +   L  +V ++SS ++MY KC ++ +A +VF+    R++    ++ V W +
Sbjct: 259 QAHAQVVTR--GLCGNVIVESSTLDMYAKCRMIVEARKVFD----RMQ---VRNAVSWCA 309

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           +LG Y +NG +++V+ L+    M+    D  +  TV+ AC+    V  G E     +H  
Sbjct: 310 LLGGYCQNGEYEKVVALFRE--MDKDDDDWYSLGTVLRACAGLSSVNPGKE-----IHCR 362

Query: 328 KLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDR 362
            L  G        S LVDL  + G +D A+ +    + R
Sbjct: 363 FLRMGGWRNVVVESALVDLYAKCGAVDYAYGVFEASIVR 401



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 18/200 (9%)

Query: 122 FVGSALIDLYAKLL--LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           ++ +AL+  Y +L   L H A   FD++P ++ V  +++L+ +  A +    L  +R M 
Sbjct: 68  YLANALLAFYVRLPRHLPH-ALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALSSLRSML 126

Query: 180 ALGLDY--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           A   D   +    SA ++ACA L     G  +H  ++ +    G+D  + S+L++MYG  
Sbjct: 127 AGADDVSPNAHAFSAAVKACAVLRDRNAGACLHGSILVR--GFGDDDIVLSALVDMYGHA 184

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKPD 296
                A + F       E     D + +TS++  + RN +F+E ++   +MLM NG +PD
Sbjct: 185 AAPGDARKAF-------EEMRTPDGICYTSLISAFVRNDWFEEAVRWSRSMLMLNGVRPD 237

Query: 297 EVAFVTVISACSHTGQVKLG 316
              F ++++A    G +K+G
Sbjct: 238 GCTFGSMMTAL---GNLKMG 254


>gi|413933941|gb|AFW68492.1| hypothetical protein ZEAMMB73_143921 [Zea mays]
          Length = 564

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/395 (34%), Positives = 226/395 (57%), Gaps = 15/395 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQ 107
           ++ + +  +I  + +NGS   A+  F  M   G+   D +  CS+L+AS  +KD  FG+ 
Sbjct: 183 KDAVTWTTMIDGYAKNGSLEAAILIFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRS 242

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAK 166
           +   + K+G+     V +AL+D+YAK   + +A  +    P   N V A +L+ GY EA 
Sbjct: 243 LHCCIIKAGFELETVVRNALLDMYAKSGDLENASRVVSIDPGGWNVVSATSLIDGYVEAG 302

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                LE    +   G++ + FT +++++ CA     E G Q+HA +++   NL +D F+
Sbjct: 303 RIEEALETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQGAQLHAQVLKT--NLISDSFV 360

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            S+L+ MYG CGL++ +LQ+FN  G+R E       + W +++ VY ++G+    I+ ++
Sbjct: 361 GSTLVYMYGNCGLISLSLQLFNEIGYRTE-------IAWNAVINVYAQHGHGWGAIQAFD 413

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M  +G +P+ + FV +++ACSH G V  G+ YF  M   + +EP  EHYSC++D+  RA
Sbjct: 414 RMTSSGIRPNHITFVCLLTACSHAGLVDEGLGYFHSMKDAHGIEPKAEHYSCIIDMYGRA 473

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G LD+A K I+EM  +     S   W +LL AC   G  ELG++AAQ  ++LDP+N GI+
Sbjct: 474 GRLDEAEKFISEMPVK----PSAYAWCSLLGACRMQGNKELGEVAAQNLMKLDPNNTGIH 529

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCS 441
           + LS +Y     W+++  +++ MK+  +KK  G S
Sbjct: 530 ISLSGIYTSLGQWEDVKAVKKSMKDISIKKLPGFS 564



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 129/263 (49%), Gaps = 10/263 (3%)

Query: 48  PR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PR N + +  ++S   +N     AL  F+ M    I    +AL S+  A+ ++   R G 
Sbjct: 80  PRPNLVSWTTLVSGLVQNSMHHDALAAFAAMRRAHIAPTQFALSSAARAAAALSAPRPGT 139

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+     + G+ + +FV S L D+Y+K  L+H+A  +FD++P K++V    ++ GY +  
Sbjct: 140 QLHCIGIRLGFDNELFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNG 199

Query: 167 LWAGGLELVRLMPALGL-DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                + + R M   GL   D     + L A  GL    FGR +H  +I+    L  +  
Sbjct: 200 SLEAAILIFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFEL--ETV 257

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           ++++L++MY K G +  A +V ++      G  N  VV  TS++  Y   G  +E ++ Y
Sbjct: 258 VRNALLDMYAKSGDLENASRVVSID----PGGWN--VVSATSLIDGYVEAGRIEEALETY 311

Query: 286 EAMLMNGTKPDEVAFVTVISACS 308
             +   G +P+E  F ++I  C+
Sbjct: 312 TELGRQGVEPNEFTFASMIKGCA 334



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 20/263 (7%)

Query: 101 DARFGKQVQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           D R G+ + A +  +G   +S F+ + LI +Y+       A  +F  +P  N V    L+
Sbjct: 32  DIRRGRALHARLLLTGAAAASTFLANHLITMYSHCADAVSAVRVFGVVPRPNLVSWTTLV 91

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           SG  +  +    L     M    +    F LS+  RA A LSA   G Q+H   IR    
Sbjct: 92  SGLVQNSMHHDALAAFAAMRRAHIAPTQFALSSAARAAAALSAPRPGTQLHCIGIR--LG 149

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
             N++F+ S+L +MY KCGL+ +A +VF+           KD V WT+M+  Y +NG  +
Sbjct: 150 FDNELFVASNLADMYSKCGLLHEACRVFDQMPQ-------KDAVTWTTMIDGYAKNGSLE 202

Query: 280 EVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS- 337
             I ++  M   G    D+  F + +SA   +G +K G  +F   +H   ++ G E  + 
Sbjct: 203 AAILIFRDMKCEGLVGADQHVFCSALSA---SGGLKDG--WFGRSLHCCIIKAGFELETV 257

Query: 338 ---CLVDLLCRAGELDKAWKLIN 357
               L+D+  ++G+L+ A ++++
Sbjct: 258 VRNALLDMYAKSGDLENASRVVS 280


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/400 (33%), Positives = 219/400 (54%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +N VI+   +NG+    L  F+ M    +  D +   S L A +S +    G
Sbjct: 439 MERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSG 498

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            ++   + KSG     FVG ALID+Y K  +I +A+ + D I  +  V  NA+++G+   
Sbjct: 499 MEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLL 558

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           K           M  + +  D+FT + +L ACA L++   G+Q+H  +I+    L +DV+
Sbjct: 559 KHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIK--LELHSDVY 616

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L++MY KCG +  +  VF       E   NKD V W +M+  Y ++G  +E +  +
Sbjct: 617 ITSTLVDMYSKCGNMQDSALVF-------EKAPNKDFVTWNAMICGYAQHGLGEEALGYF 669

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M +   +P+   FV+++ AC+H G +  G+ YF  M+ +Y LEP  EHYSC++D++ R
Sbjct: 670 ERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGR 729

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           +G + +A KLI EM       +   +W  LLS C   G  E+ + A    L+L+P +   
Sbjct: 730 SGRISEALKLIQEM----PFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPEDSSA 785

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            ++LSN+YA   MW ++ ++R++M+   LKK+ GCSWIEV
Sbjct: 786 CILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEV 825



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 180/372 (48%), Gaps = 29/372 (7%)

Query: 38  TLTNCLKFLNP-RNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALCSSLTA 95
            L N   +  P R+ + +N ++S F +NG    ++  F  M     +  D       L A
Sbjct: 126 NLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKA 185

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
            + ++D   G QV   + + G+   V  GSAL+D+YAK   + D+  +F EIPVKN VC 
Sbjct: 186 CSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCW 245

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           +A+++G  +      GLEL + M  +G+       +++ R+CAGLSA + G Q+HA+ ++
Sbjct: 246 SAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALK 305

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLEGEINKDVVLWTSMLGVYGR 274
             C+ G+D+ + ++ ++MY KCG +  A ++FN L  H L+         + +++    R
Sbjct: 306 --CDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQ--------CYNAIIVGCVR 355

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           N    E ++ ++ +L +G   +E++     SAC+       G +     +H   ++    
Sbjct: 356 NEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQ-----LHSLSVKSTLR 410

Query: 335 HYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LG 388
              C    ++D+  +   L +A  + +EM  R   S     W A+++A    G  E  L 
Sbjct: 411 SNICVANSILDMYGKCEALSEACCMFDEMERRDAVS-----WNAVIAAHEQNGNEEETLN 465

Query: 389 KLAAQKALELDP 400
             A+   L ++P
Sbjct: 466 LFASMLRLRMEP 477



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 130/290 (44%), Gaps = 48/290 (16%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GKQ  A +  SG++  V++ + L+ +Y +   ++ A  +F+++  ++ +  N ++SGY +
Sbjct: 62  GKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYAD 121

Query: 165 A----------------------KLWAGGLE----------LVRLMPALGLDYDHFTLSA 192
           A                       + +G L+           + +  +  + +D  T + 
Sbjct: 122 AGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAV 181

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L+AC+ L     G QVH  ++R       DV   S+L++MY KC  +  +L++F+    
Sbjct: 182 VLKACSVLEDGGLGIQVHGLIVR--MGFYKDVVTGSALLDMYAKCKRLDDSLKIFS---- 235

Query: 253 RLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
               EI  K+ V W++++    +N      ++L++ M   G    +  + +V  +C+   
Sbjct: 236 ----EIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLS 291

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEM 359
            +K+G +      H  K + G +    +  +D+  + G L  A ++ N +
Sbjct: 292 ALKVGTQLH---AHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSL 338



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 33/216 (15%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T S +++ C+  ++ + G+Q HA MI        DV++ + L++MY +C  +  A +VF 
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMI--VSGFIPDVYISNCLMKMYLRCSHLNYAYKVFE 102

Query: 249 -------------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKL 284
                        ++G+   GE+N           +DVV W SML  + +NG  ++ I +
Sbjct: 103 KMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDV 162

Query: 285 YEAM-LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           +  M        D+  F  V+ ACS      LGI+    +V            S L+D+ 
Sbjct: 163 FLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVR-MGFYKDVVTGSALLDMY 221

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
            +   LD + K+ +E+  +     +   W A+++ C
Sbjct: 222 AKCKRLDDSLKIFSEIPVK-----NWVCWSAIIAGC 252


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/400 (36%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI-FLDTYALCSSLTASTSVKDARFGKQ 107
           RN + ++ +I  F        A   F  M   G+ FL   ++ S+L A  S+   R G+Q
Sbjct: 187 RNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQ 246

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + A + KSG  + +  G++L+ +YAK  LI  A  +FDE+ VK++V  +AL+SGY +   
Sbjct: 247 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 306

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                 + + M A  ++ D  T+ +L+ AC+ L+A + GR  H  +I +   L ++  + 
Sbjct: 307 AEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR--GLASETSIC 364

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+MY KCG +  + QVFN+   R       D+V W +M+  YG +G  KE   L+  
Sbjct: 365 NALIDMYAKCGRIDLSRQVFNMMPSR-------DIVSWNTMIAGYGIHGLGKEATALFLE 417

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G  PD V F+ ++SACSH+G V  G  +F  M H Y L P  EHY C+VDLL R G
Sbjct: 418 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 477

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            LD+A++ I  M  R    + V +W ALL AC      +LGK  ++   EL P   G +V
Sbjct: 478 FLDEAYEFIQSMPLR----ADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 533

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+Y+    +DE  ++R + K +G KK  GCSWIE+ G
Sbjct: 534 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEING 573



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 140/299 (46%), Gaps = 35/299 (11%)

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
           H +  + Y    +L A +++ D   G+ +  H   +G  + +FV +AL+D+Y K   + D
Sbjct: 4   HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD 63

Query: 140 AELMFDEIPVKNSVCANALLSGYCE--------AKLWAGGLELVRLMPALGLDYDHFTLS 191
           A  +F  +P ++ V  NA+L+GY          A L +  +++ RL P      +  TL 
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRP------NASTLV 117

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKC--------CNLGNDVFMQSSLIEMYGKCGLVTKA 243
           ALL   A   A   G  VHAY IR C          L + V + ++L++MY KCG +  A
Sbjct: 118 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 177

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG---TKPDEVAF 300
            +VF+    R E       V W++++G +       +   L++AML  G     P  +A 
Sbjct: 178 RRVFDAMPARNE-------VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA- 229

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
            + + AC+    +++G E    ++    +       + L+ +  +AG +D+A  L +EM
Sbjct: 230 -SALRACASLDHLRMG-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 286


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 224/403 (55%), Gaps = 14/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
              ++ R  + +  +I+ + R G    A++ F  M   G+  D + + + L A       
Sbjct: 56  FDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSL 115

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GK V  ++ ++   S++FV +AL+D+YAK   + DA  +F E+PVK+ +  N ++ GY
Sbjct: 116 ENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGY 175

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +  L    L L   M  L +  D  TL+ +L ACA L++ + G++VH +++R      +
Sbjct: 176 SKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRN--GFFS 232

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D  + ++L++MY KCG+   A  +F++          KD++ WT M+  YG +G+    I
Sbjct: 233 DQQVANALVDMYVKCGVPVLARLLFDMIP-------TKDLITWTVMIAGYGMHGFGNNAI 285

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
             +  M   G +PDEV+F++++ ACSH+G +  G  +F  M  +  ++P  EHY+C+VDL
Sbjct: 286 TTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDL 345

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L R+G+L  A+K I  M          ++WGALLS C      +L +  A+   EL+P N
Sbjct: 346 LARSGKLAMAYKFIKSMPIE----PDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPEN 401

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G YV+L+N YA+   W+E+ +LR+ +  +GLKK+ GCSWIEV
Sbjct: 402 TGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEV 444



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 126/263 (47%), Gaps = 19/263 (7%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           + S L A  +  D   G+ V     K+         + L+D+YAK  ++  A L+FD + 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
           V+  V   +L++ Y    L    + L   M   G+  D FT++ +L ACA   + E G+ 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           VH Y+     ++ +++F+ ++L++MY KCG +  A  VF      LE  + KD++ W +M
Sbjct: 121 VHNYIREN--DMQSNIFVCNALMDMYAKCGSMEDANSVF------LEMPV-KDIISWNTM 171

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +G Y +N    E + L+  M++   KPD      ++ AC+    +  G E     VH + 
Sbjct: 172 IGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKE-----VHGHI 225

Query: 329 LEPG----PEHYSCLVDLLCRAG 347
           L  G     +  + LVD+  + G
Sbjct: 226 LRNGFFSDQQVANALVDMYVKCG 248


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/400 (36%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI-FLDTYALCSSLTASTSVKDARFGKQ 107
           RN + ++ +I  F        A   F  M   G+ FL   ++ S+L A  S+   R G+Q
Sbjct: 187 RNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQ 246

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + A + KSG  + +  G++L+ +YAK  LI  A  +FDE+ VK++V  +AL+SGY +   
Sbjct: 247 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 306

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                 + + M A  ++ D  T+ +L+ AC+ L+A + GR  H  +I +   L ++  + 
Sbjct: 307 AEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR--GLASETSIC 364

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+MY KCG +  + QVFN+   R       D+V W +M+  YG +G  KE   L+  
Sbjct: 365 NALIDMYAKCGRIDLSRQVFNMMPSR-------DIVSWNTMIAGYGIHGLGKEATALFLE 417

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G  PD V F+ ++SACSH+G V  G  +F  M H Y L P  EHY C+VDLL R G
Sbjct: 418 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 477

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            LD+A++ I  M  R    + V +W ALL AC      +LGK  ++   EL P   G +V
Sbjct: 478 FLDEAYEFIQSMPLR----ADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 533

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+Y+    +DE  ++R + K +G KK  GCSWIE+ G
Sbjct: 534 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEING 573



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 141/299 (47%), Gaps = 35/299 (11%)

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
           H +  + Y    +L A +++ D   G+ +  H   +G  + +FV +AL+D+Y K   + D
Sbjct: 4   HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPD 63

Query: 140 AELMFDEIPVKNSVCANALLSGYCE--------AKLWAGGLELVRLMPALGLDYDHFTLS 191
           A  +F  +P ++ V  NA+L+GY          A L +  +++ RL P      +  TL 
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRP------NASTLV 117

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCN--------LGNDVFMQSSLIEMYGKCGLVTKA 243
           ALL   A   A   G  VHAY IR C +        L + V + ++L++MY KCG +  A
Sbjct: 118 ALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYA 177

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG---TKPDEVAF 300
            +VF+    R E       V W++++G +       +   L++AML  G     P  +A 
Sbjct: 178 RRVFDAMPARNE-------VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA- 229

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
            + + AC+    +++G E    ++    +       + L+ +  +AG +D+A  L +EM
Sbjct: 230 -SALRACASLDHLRMG-EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 286


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/415 (32%), Positives = 226/415 (54%), Gaps = 20/415 (4%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G        +  R+ + ++ +++ F   G PL A++ +  M   G+  D   +   + A
Sbjct: 159 MGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
            T+ ++ R G  V  H+ + G    V   ++L+D+YAK  L+  A  +F  +  +N V  
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           +A++SG+ +       L L R M A G+  D   L + L AC+ +   + GR VH +++R
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVR 338

Query: 216 K---CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           +    C LG      ++ I+MY KCG +  A  +FN+         ++D++LW +M+   
Sbjct: 339 RFDFNCILG------TAAIDMYSKCGSLASAQMLFNMIS-------DRDLILWNAMIACC 385

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           G +G  ++ + L++ M   G +PD   F +++SA SH+G V+ G  +F  MV+ +K+ P 
Sbjct: 386 GAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPA 445

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
            +HY CLVDLL R+G +++A  L+  M        +V++W ALLS C +  K ELG+  A
Sbjct: 446 EKHYVCLVDLLARSGLVEEASDLLTSM----KAEPTVAIWVALLSGCLNNKKLELGESIA 501

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
              LEL P +VG+  ++SNLYA    WD++ Q+R+LMK+ G KK  GCS IE+ G
Sbjct: 502 DNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRG 556



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 169/357 (47%), Gaps = 29/357 (8%)

Query: 63  RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF 122
           R GSP  AL+ F  +       D+     +L+A   + D R G+ V+     +G+   VF
Sbjct: 86  RRGSPASALRVFRALP-PAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVF 144

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           V S+L+ LYA+   + DA  +F  +P ++ V  + +++G+  A      +++ R M   G
Sbjct: 145 VCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDG 204

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D   +  +++AC        G  VH +++R    +  DV   +SL++MY K GL+  
Sbjct: 205 VKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRM--DVVTATSLVDMYAKNGLLDV 262

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A +VF L  HR +       V W++M+  + +NG   E ++L+  M  +G +PD  A V+
Sbjct: 263 ACRVFGLMVHRND-------VSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVS 315

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL-----VDLLCRAGELDKAWKLIN 357
            + ACS+ G +KLG     ++V  +        ++C+     +D+  + G L  A  L N
Sbjct: 316 ALLACSNIGFLKLGRSVHGFIVRRFD-------FNCILGTAAIDMYSKCGSLASAQMLFN 368

Query: 358 EMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
            + DR      + +W A+++ C  H  G+  L          + P +     +LS L
Sbjct: 369 MISDR-----DLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSAL 420


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 148/429 (34%), Positives = 233/429 (54%), Gaps = 18/429 (4%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I   + L+  Y    H     T+      L+ RN + +N +I+++  N  PL A++    
Sbjct: 248 IFIANSLIDMYAKSGHSTEASTI---FHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQ 304

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G   +     + L A   +     GK++ A   + G  S +FV ++LID+YAK   
Sbjct: 305 MQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGC 364

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +H A  +F+    K+ V  N L+ GY E       L L   M  LG   D  +   ++ A
Sbjct: 365 LHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISA 423

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA L+A + G++VH   +R   +L + +F+ +SL++ Y KCG +  A ++FN        
Sbjct: 424 CANLAALKQGKEVHGVALRN--HLYSHLFVSNSLLDFYTKCGRIDIACRLFNQI------ 475

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            + KDV  W +M+  YG  G  +  I ++EAM  +  + D V+++ V+SACSH G V+ G
Sbjct: 476 -LFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERG 534

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            +YF  M+   +LEP   HY+C+VDLL RAG +++A KLI ++      +   ++WGALL
Sbjct: 535 WQYFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQL----PIAPDANIWGALL 589

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
            AC   G  ELG+ AA+   EL P + G Y++LSN+YA+   WDE  ++RELMK +G KK
Sbjct: 590 GACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKK 649

Query: 437 DVGCSWIEV 445
           + GCSW+++
Sbjct: 650 NPGCSWVQI 658



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 160/342 (46%), Gaps = 24/342 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +N +I+     G    AL  F  M   G   ++  + S L     ++  + GK++
Sbjct: 176 KNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEI 235

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                + G  + +F+ ++LID+YAK     +A  +F  +  +N V  NA+++ Y   +L 
Sbjct: 236 HGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLP 295

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +  V  M   G   +  T + +L ACA L     G+++HA  +R    L +D+F+ +
Sbjct: 296 LEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVR--IGLTSDLFVSN 353

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A  VFN +         KD V +  ++  Y       + + L+  M
Sbjct: 354 SLIDMYAKCGCLHSARNVFNTS--------RKDEVSYNILIIGYSETDDCLQSLNLFSEM 405

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
            + G KPD V+FV VISAC++   +K G E     VH   L      +    + L+D   
Sbjct: 406 RLLGKKPDVVSFVGVISACANLAALKQGKE-----VHGVALRNHLYSHLFVSNSLLDFYT 460

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           + G +D A +L N++L +      V+ W  ++      G+ E
Sbjct: 461 KCGRIDIACRLFNQILFK-----DVASWNTMILGYGMIGELE 497



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 139/312 (44%), Gaps = 36/312 (11%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+ LD +     L   +   D   G +V   V K G+ + V+VG+ L+ LY     
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 137 IHDAELMFDEIPVKNSVCANALL------SGYCEAKLWAGGLELVRLM-PALGLDYDHFT 189
           ++DA  +FDE+P ++ V  N ++        Y EA+ +   + L  ++ P L       +
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNL------VS 114

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           + +LL   A L   E  R++H Y ++    L + V   ++L++ YGKCG V    QVFN 
Sbjct: 115 VISLLPISAALEDEEMTRRIHCYSVK--VGLDSQVTTCNALVDAYGKCGSVKALWQVFNE 172

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                   + K+ V W S++      G   + +  +  M+  G +P+ V   +++     
Sbjct: 173 T-------VEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVE 225

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
               K G E     +H + +  G E      + L+D+  ++G   +A  + +  LDR   
Sbjct: 226 LECFKAGKE-----IHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHN-LDR--- 276

Query: 366 SSSVSMWGALLS 377
             ++  W A+++
Sbjct: 277 -RNIVSWNAMIA 287


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/434 (32%), Positives = 233/434 (53%), Gaps = 43/434 (9%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKT 73
           I F + L+  Y+ C      G L   L+    +  RN + +  +I+ + R+G    A++ 
Sbjct: 286 INFSNTLLDMYSKC------GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRL 339

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
              M   G+ LD  A  S L A         GK V  ++  +   S++FV +AL+D+Y K
Sbjct: 340 LQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTK 399

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A  +F  + VK+ +  N ++                 L P      D  T++ +
Sbjct: 400 CGSMDGANSVFSTMVVKDIISWNTMIG---------------ELKP------DSRTMACI 438

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA LSA E G+++H Y++R      +D  + ++L+++Y KCG++  A  +F++    
Sbjct: 439 LPACASLSALERGKEIHGYILRN--GYSSDRHVANALVDLYVKCGVLGLARLLFDMIP-- 494

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                +KD+V WT M+  YG +GY  E I  +  M   G +PDEV+F++++ ACSH+G +
Sbjct: 495 -----SKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  +F  M +D+ +EP  EHY+C+VDLL R G L KA++ I  +      +   ++WG
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETL----PIAPDATIWG 605

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL  C      EL +  A++  EL+P N G YV+L+N+YA+   W+E+ ++RE + +KG
Sbjct: 606 ALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKG 665

Query: 434 LKKDVGCSWIEVTG 447
           L+K+ GCSWIE+ G
Sbjct: 666 LRKNPGCSWIEIKG 679



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 123/265 (46%), Gaps = 27/265 (10%)

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
             A  +FD++  ++ +  N+++SGY    L   GLE+ + M  LG+D D  T+ ++L  C
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGC 261

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A       G+ VH+  I+        +   ++L++MY KCG +  AL+VF   G R    
Sbjct: 262 ANSGTLSLGKAVHSLAIKS--TFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER---- 315

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              +VV WTSM+  Y R+G     I+L + M   G K D VA  +++ AC+ +G +  G 
Sbjct: 316 ---NVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGK 372

Query: 318 EYFEWMVHDY----KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR---------GH 364
           +     VHDY     +E      + L+D+  + G +D A  + + M+ +         G 
Sbjct: 373 D-----VHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGE 427

Query: 365 GSSSVSMWGALLSACHDCGKFELGK 389
                     +L AC      E GK
Sbjct: 428 LKPDSRTMACILPACASLSALERGK 452



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 164/372 (44%), Gaps = 49/372 (13%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS +  NG     L+ +  M   GI +D   + S L    +      GK V
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +   KS +   +   + L+D+Y+K   +  A  +F+++  +N V   ++++GY      
Sbjct: 274 HSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRS 333

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G + L++ M   G+  D    +++L ACA   + + G+ VH Y+  K  N+ +++F+ +
Sbjct: 334 DGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYI--KANNMESNLFVCN 391

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  A  VF+         + KD++ W +M+G                  
Sbjct: 392 ALMDMYTKCGSMDGANSVFSTM-------VVKDIISWNTMIGEL---------------- 428

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYS-CLVDLLC 344
                KPD      ++ AC+    ++ G E     +H Y L  G     H +  LVDL  
Sbjct: 429 -----KPDSRTMACILPACASLSALERGKE-----IHGYILRNGYSSDRHVANALVDLYV 478

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHN 402
           + G L  A +L+ +M+     S  +  W  ++S    H  G   +      +   ++P  
Sbjct: 479 KCGVLGLA-RLLFDMIP----SKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDE 533

Query: 403 VGIYVMLSNLYA 414
           V     +S LYA
Sbjct: 534 VSF---ISILYA 542


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/407 (34%), Positives = 223/407 (54%), Gaps = 14/407 (3%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N  + ++ +N + +N +I+ + ++     A+ TF  +   GI  D+    S L    S  
Sbjct: 463 NVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPD 522

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
               GK VQ+ + ++G+ S + + +AL+ ++     +  A  +F+++P ++ V  N +++
Sbjct: 523 ALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIA 582

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           G+ +        +  ++M   G+  D  T + LL ACA   A   GR++HA +      L
Sbjct: 583 GFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAA--L 640

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             DV + + LI MY KCG +  A  VF    H L     K+V  WTSM+  Y ++G  KE
Sbjct: 641 DCDVVVGTGLISMYTKCGSIDDAHLVF----HNLP---KKNVYSWTSMITGYAQHGRGKE 693

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            ++L+  M   G KPD + FV  +SAC+H G +K G+ +FE M  D+ +EP  EHY C+V
Sbjct: 694 ALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMV 752

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DL  RAG L +A + IN+M           +WGALL AC      EL +  AQK LELDP
Sbjct: 753 DLFGRAGLLHEAVEFINKM----QVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDP 808

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           ++ G+YV+LSN+YA   MW E+ ++R++M ++G+ K  G SWIEV G
Sbjct: 809 NDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDG 855



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 168/348 (48%), Gaps = 23/348 (6%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           N  +       +  ++   +N+++  + ++     A +    M   G+  D Y     L 
Sbjct: 154 NTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLN 213

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A    K+   G ++ + +  +GW + +FVG+ALI+++ K   + DA  +F+ +P ++ + 
Sbjct: 214 ACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLIT 273

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
             ++++G    + +     L ++M   G+  D     +LL+AC    A E G++VHA M 
Sbjct: 274 WTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM- 332

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
            K   L  ++++ ++L+ MY KCG +  AL+VFNL   R       +VV WT+M+  + +
Sbjct: 333 -KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR-------NVVSWTAMIAGFAQ 384

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-- 332
           +G  +E    +  M+ +G +P+ V F++++ ACS    +K G +     +HD  ++ G  
Sbjct: 385 HGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQ-----IHDRIIKAGYI 439

Query: 333 --PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
                 + L+ +  + G L  A  +   +        +V  W A+++A
Sbjct: 440 TDDRVRTALLSMYAKCGSLMDARNVFERI-----SKQNVVAWNAMITA 482



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 177/375 (47%), Gaps = 31/375 (8%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGS---PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           +F++ +N    N  ++   + G     +  L +    H+  I   TY+  S L      K
Sbjct: 62  EFVDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQ-IHRQTYS--SLLQLCIKHK 118

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           +   G+++  H+  S     +F+ + LI +YAK    + A+ +FDE+P K+    N LL 
Sbjct: 119 NLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLG 178

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY + + +     L   M   G+  D +T   +L ACA     + G ++ + ++      
Sbjct: 179 GYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILN--AGW 236

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             D+F+ ++LI M+ KCG V  AL+VFN    R       D++ WTSM+    R+  FK+
Sbjct: 237 DTDLFVGTALINMHIKCGGVDDALKVFNNLPRR-------DLITWTSMITGLARHRQFKQ 289

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY-- 336
              L++ M   G +PD+VAFV+++ AC+H   ++ G       VH    E G   E Y  
Sbjct: 290 ACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKR-----VHARMKEVGLDTEIYVG 344

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
           + L+ +  + G ++ A ++ N +  R     +V  W A+++     G+ E   L   K +
Sbjct: 345 TALLSMYTKCGSMEDALEVFNLVKGR-----NVVSWTAMIAGFAQHGRMEEAFLFFNKMI 399

Query: 397 E--LDPHNVGIYVML 409
           E  ++P+ V    +L
Sbjct: 400 ESGIEPNRVTFMSIL 414



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 152/310 (49%), Gaps = 20/310 (6%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVI 58
           VHA   E GL     I   + L+  YT C      G++ + L+  N    RN + +  +I
Sbjct: 328 VHARMKEVGL--DTEIYVGTALLSMYTKC------GSMEDALEVFNLVKGRNVVSWTAMI 379

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           + F ++G    A   F+ M   GI  +     S L A +     + G+Q+   + K+G++
Sbjct: 380 AGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYI 439

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           +   V +AL+ +YAK   + DA  +F+ I  +N V  NA+++ Y + + +   +   + +
Sbjct: 440 TDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQAL 499

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              G+  D  T +++L  C    A E G+ V + +IR      +D+ ++++L+ M+  CG
Sbjct: 500 LKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIR--AGFESDLHIRNALVSMFVNCG 557

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A+ +FN    R       D+V W +++  + ++G  +     ++ M  +G KPD++
Sbjct: 558 DLMSAMNLFNDMPER-------DLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQI 610

Query: 299 AFVTVISACS 308
            F  +++AC+
Sbjct: 611 TFTGLLNACA 620


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 143/400 (35%), Positives = 225/400 (56%), Gaps = 15/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ RN + +N +I+++  N  PL A++    M   G   +     + L A   +     G
Sbjct: 423 LDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPG 482

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++ A   + G  S +FV ++LID+YAK   +H A  +F+    K+ V  N L+ GY E 
Sbjct: 483 KEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSET 541

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L L   M  LG   D  +   ++ ACA L+A + G++VH   +R   +L + +F
Sbjct: 542 DDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRN--HLYSHLF 599

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +SL++ Y KCG +  A ++FN         + KDV  W +M+  YG  G  +  I ++
Sbjct: 600 VSNSLLDFYTKCGRIDIACRLFNQI-------LFKDVASWNTMILGYGMIGELETAISMF 652

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           EAM  +  + D V+++ V+SACSH G V+ G +YF  M+   +LEP   HY+C+VDLL R
Sbjct: 653 EAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQ-RLEPTEMHYTCMVDLLGR 711

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG +++A KLI ++      +   ++WGALL AC   G  ELG+ AA+   EL P + G 
Sbjct: 712 AGFVEEAAKLIQQL----PIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGY 767

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y++LSN+YA+   WDE  ++RELMK +G KK+ GCSW+++
Sbjct: 768 YILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQI 807



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 160/342 (46%), Gaps = 24/342 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +N +I+     G    AL  F  M   G   ++  + S L     ++  + GK++
Sbjct: 325 KNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEI 384

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                + G  + +F+ ++LID+YAK     +A  +F  +  +N V  NA+++ Y   +L 
Sbjct: 385 HGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLP 444

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +  V  M   G   +  T + +L ACA L     G+++HA  +R    L +D+F+ +
Sbjct: 445 LEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVR--IGLTSDLFVSN 502

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A  VFN +         KD V +  ++  Y       + + L+  M
Sbjct: 503 SLIDMYAKCGCLHSARNVFNTS--------RKDEVSYNILIIGYSETDDCLQSLNLFSEM 554

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
            + G KPD V+FV VISAC++   +K G E     VH   L      +    + L+D   
Sbjct: 555 RLLGKKPDVVSFVGVISACANLAALKQGKE-----VHGVALRNHLYSHLFVSNSLLDFYT 609

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           + G +D A +L N++L +      V+ W  ++      G+ E
Sbjct: 610 KCGRIDIACRLFNQILFK-----DVASWNTMILGYGMIGELE 646



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 164/370 (44%), Gaps = 40/370 (10%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVIS--DFCRNGSPLYALKTFSFMH 78
           + L+L Y   +H  +  +L N   F N R    +N +I       NG+     +T++ M 
Sbjct: 94  ASLILNYAKFQHPGSFCSLFN-QTFQNCRTAFLWNTLIRAHSIAWNGT-FDGFETYNRMV 151

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
             G+ LD +     L   +   D   G +V   V K G+ + V+VG+ L+ LY     ++
Sbjct: 152 RRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLN 211

Query: 139 DAELMFDEIPVKNSVCANALL------SGYCEAKLWAGGLELVRLM-PALGLDYDHFTLS 191
           DA  +FDE+P ++ V  N ++        Y EA+ +   + L  ++ P L       ++ 
Sbjct: 212 DARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNL------VSVI 265

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           +LL   A L   E  R++H Y ++    L + V   ++L++ YGKCG V    QVFN   
Sbjct: 266 SLLPISAALEDEEMTRRIHCYSVK--VGLDSQVTTCNALVDAYGKCGSVKALWQVFN--- 320

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
                 + K+ V W S++      G   + +  +  M+  G +P+ V   +++       
Sbjct: 321 ----ETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELE 376

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
             K G E     +H + +  G E      + L+D+  ++G   +A  + +  LDR     
Sbjct: 377 CFKAGKE-----IHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHN-LDR----R 426

Query: 368 SVSMWGALLS 377
           ++  W A+++
Sbjct: 427 NIVSWNAMIA 436


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 154/449 (34%), Positives = 236/449 (52%), Gaps = 22/449 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRN---PLPFNVVI 58
           +H H F+TG LL   +  Q+ L+  Y  C    N   L +     NP++    + +N ++
Sbjct: 32  LHCHVFKTGCLLEPFV--QTSLISMYGKCSLIDNARKLFD----ENPQSRKLTVCYNSLL 85

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           S +  N      +  F  M   G+ ++   +   +       +   G  V     K G  
Sbjct: 86  SGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLD 145

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
               VG+ L+ +Y K   I     +FDE+P K  +  NA+++GY +  L    LEL + M
Sbjct: 146 MDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEM 205

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
            + G   D  TL  +L +CA L A   G++V   M  +     ++ F+ ++L+ MY +CG
Sbjct: 206 ESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM--EGFGFSSNPFLNNALVNMYARCG 263

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            + KA  +F       +G   K VV WT+++G YG +G  +  + L++ M+  G KPD  
Sbjct: 264 NLKKARDIF-------DGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGT 316

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           AFV+V+SACSH G    G++YF  M   Y L PG EHYSC+VDLL RAG L++A +LI  
Sbjct: 317 AFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIES 376

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M  R  G    ++WGALL AC      EL +LA ++ +EL+P N G YV+LSN+Y +   
Sbjct: 377 MQVRADG----ALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGN 432

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            + I ++R LM+++ LKKD GCS++E  G
Sbjct: 433 LEGILRVRMLMRKRKLKKDPGCSYVEFKG 461



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 132/276 (47%), Gaps = 17/276 (6%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGY 162
           GKQ+  HV K+G L   FV ++LI +Y K  LI +A  +FDE P   K +VC N+LLSGY
Sbjct: 29  GKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGY 88

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                    + L   M  LG++ +  T+  L++ C        G  VH + ++    L  
Sbjct: 89  ALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVK--FGLDM 146

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D  + + L+ MY K G +    ++F+           K ++ W +M+  Y +NG    V+
Sbjct: 147 DSSVGNCLLTMYVKSGEIDCGRKLFDEMPR-------KGLITWNAMINGYAQNGLANNVL 199

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +LY+ M   G  PD +  V V+S+C+H G + +G E  E  +  +     P   + LV++
Sbjct: 200 ELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKE-VERKMEGFGFSSNPFLNNALVNM 258

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
             R G L KA  + +     G    SV  W A++  
Sbjct: 259 YARCGNLKKARDIFD-----GMPVKSVVSWTAIIGG 289



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 17/223 (7%)

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G   + FT    +++CA LS    G+Q+H ++ +  C L  + F+Q+SLI MYGKC L+ 
Sbjct: 5   GASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLL--EPFVQTSLISMYGKCSLID 62

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A ++F+        +  K  V + S+L  Y  N   K+V+ L+  M   G + + V  +
Sbjct: 63  NARKLFD-----ENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTML 117

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            ++  C   G + LG+    + V  + L+      +CL+ +  ++GE+D   KL +EM  
Sbjct: 118 GLVQPCGIPGNLGLGMCVHGFCV-KFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPR 176

Query: 362 RGHGSSSVSMWGALLSACHDCG----KFELGKLAAQKALELDP 400
           +G     +  W A+++     G      EL K    K    DP
Sbjct: 177 KG-----LITWNAMINGYAQNGLANNVLELYKEMESKGFCPDP 214


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/399 (36%), Positives = 221/399 (55%), Gaps = 14/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I    ++   L A++ F  M   G+ +D + + S LTA T VKD   G Q 
Sbjct: 206 RDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQF 265

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSGYCEAK- 166
              + KSG+  +  VGS LIDLY+K    + +   +F+EI   + V  N ++SG+ + + 
Sbjct: 266 HGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYED 325

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L   G+   R M   G   D  +   +  AC+ LS+   G+QVHA  I+      N V +
Sbjct: 326 LSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPY-NRVSV 384

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L+ MY KCG V  A +VF+            ++V   SM+  Y ++G   E ++L+E
Sbjct: 385 NNALVAMYSKCGNVHDARRVFDTMPEH-------NMVSLNSMIAGYAQHGVEVESLRLFE 437

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML     P+ + F+ V+SAC HTG+V+ G +YF  M   +++EP  EHYSC++DLL RA
Sbjct: 438 LMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRA 497

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G+L +A ++I E +    GS     W  LL AC   G  EL   AA + L+L+P+N   Y
Sbjct: 498 GKLKEAERII-ETMPFNPGSIE---WATLLGACRKHGNVELAVKAANEFLQLEPYNAAPY 553

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           VMLSN+YA    W+E   ++ LM+E+G+KK  GCSWIE+
Sbjct: 554 VMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEI 592



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 15/259 (5%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           +VF  + LI+ YAK  LIH A  +FDEIP  + V  N L++ Y +       L L   + 
Sbjct: 74  NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVR 133

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
            L    D FTLS ++ AC         RQ+H +++   C       + ++++  Y + G 
Sbjct: 134 ELRFGLDGFTLSGVIIACG--DDVGLVRQLHCFVV--VCGYDCYASVNNAVLACYSRKGF 189

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           + +A +VF   G   EG   +D V W +M+   G++    E ++L+  M+  G K D   
Sbjct: 190 LNEARRVFREMG---EGG-GRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFT 245

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR-AGELDKAWKLINE 358
             +V++A +    +  G+++   M+            S L+DL  + AG + +  K+  E
Sbjct: 246 MASVLTAFTCVKDLVGGMQFHGMMIKS-GFHGNSHVGSGLIDLYSKCAGGMVECRKVFEE 304

Query: 359 MLDRGHGSSSVSMWGALLS 377
           +      +  + +W  ++S
Sbjct: 305 I-----AAPDLVLWNTMIS 318


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/404 (34%), Positives = 233/404 (57%), Gaps = 20/404 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS F ++     AL  F  M + G+ LD   + S L A + ++    GK++
Sbjct: 177 RDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEI 236

Query: 109 QAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
            A+V ++  L  + FVGSAL+D+Y     +     +FD I  +     NA++SGY    L
Sbjct: 237 HAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGL 296

Query: 168 WAGGLEL-VRLMPALGLDYDHFTLSALLRACA-GLSAAEFGRQVHAYMIRKCCNLGNDVF 225
               L L + ++   GL  +  T+++++ AC   L+A   G+++HAY IR    L +D+ 
Sbjct: 297 DEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNM--LASDIT 354

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L++MY KCG +  + +VFN          NK+V+ W  ++   G +G  +E ++L+
Sbjct: 355 VGSALVDMYAKCGCLNLSRRVFNEMP-------NKNVITWNVLIMACGMHGKGEEALELF 407

Query: 286 EAMLMNG-----TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
           + M+         KP+EV F+TV +ACSH+G +  G+  F  M HD+ +EP  +HY+C+V
Sbjct: 408 KNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVV 467

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RAG+L++A++L+N M         V  W +LL AC      ELG++AA+  L L+P
Sbjct: 468 DLLGRAGQLEEAYELVNTMPAE---FDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEP 524

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +    YV+LSN+Y+   +W++  ++R+ M++ G+KK+ GCSWIE
Sbjct: 525 NVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE 568



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 170/341 (49%), Gaps = 39/341 (11%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS--------- 120
           A+ T+  M V G   D +A  + L A + ++D + G+Q+ A   K G+ SS         
Sbjct: 76  AISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLV 135

Query: 121 ------------VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                        F  +AL+ +YAKL  + D++ +F+    ++ V  N ++S + ++  +
Sbjct: 136 NMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRF 195

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
           +  L   RLM   G++ D  T++++L AC+ L   + G+++HAY++R   +L  + F+ S
Sbjct: 196 SEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRN-NDLIENSFVGS 254

Query: 229 SLIEMYGKCGLVTKALQVFN-LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +L++MY  C  V    +VF+ + G R+E        LW +M+  Y RNG  ++ + L+  
Sbjct: 255 ALVDMYCNCRQVESGRRVFDHILGRRIE--------LWNAMISGYARNGLDEKALILFIE 306

Query: 288 ML-MNGTKPDEVAFVTVISACSHT-GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           M+ + G  P+     +V+ AC H+   +  G E   + + +  L       S LVD+  +
Sbjct: 307 MIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAK 365

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            G L+ + ++ NEM ++     +V  W  L+ AC   GK E
Sbjct: 366 CGCLNLSRRVFNEMPNK-----NVITWNVLIMACGMHGKGE 401


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 145/400 (36%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI-FLDTYALCSSLTASTSVKDARFGKQ 107
           RN + ++ +I  F        A   F  M   G+ FL   ++ S+L A  S+   R G+Q
Sbjct: 302 RNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQ 361

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + A + KSG  + +  G++L+ +YAK  LI  A  +FDE+ VK++V  +AL+SGY +   
Sbjct: 362 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 421

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                 + + M A  ++ D  T+ +L+ AC+ L+A + GR  H  +I +   L ++  + 
Sbjct: 422 AEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR--GLASETSIC 479

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+MY KCG +  + QVFN+   R       D+V W +M+  YG +G  KE   L+  
Sbjct: 480 NALIDMYAKCGRIDLSRQVFNMMPSR-------DIVSWNTMIAGYGIHGLGKEATALFLE 532

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G  PD V F+ ++SACSH+G V  G  +F  M H Y L P  EHY C+VDLL R G
Sbjct: 533 MNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGG 592

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            LD+A++ I  M  R    + V +W ALL AC      +LGK  ++   EL P   G +V
Sbjct: 593 FLDEAYEFIQSMPLR----ADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV 648

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+Y+    +DE  ++R + K +G KK  GCSWIE+ G
Sbjct: 649 LLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEING 688



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 153/334 (45%), Gaps = 41/334 (12%)

Query: 51  PLPFNVVISDFCR---NGSPLYA---LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           P P     +D  R   + SP  A   L  +  M  H +  + Y    +L A +++ D   
Sbjct: 84  PSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALADHHC 143

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+ +  H   +G  + +FV +AL+D+Y K   + DA  +F  +P ++ V  NA+L+GY  
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203

Query: 165 --------AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
                   A L +  +++ RL P      +  TL ALL   A   A   G  VHAY IR 
Sbjct: 204 HGMYHHAVAHLLSMQMQMHRLRP------NASTLVALLPLLAQQGALAQGTSVHAYCIRA 257

Query: 217 CCN--------LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           C +        L + V + ++L++MY KCG +  A +VF+    R E       V W+++
Sbjct: 258 CLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE-------VTWSAL 310

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNG---TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           +G +       +   L++AML  G     P  +A  + + AC+    +++G E    ++ 
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG-EQLHALLA 367

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
              +       + L+ +  +AG +D+A  L +EM
Sbjct: 368 KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEM 401


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 140/415 (33%), Positives = 226/415 (54%), Gaps = 18/415 (4%)

Query: 36  LGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           LG L    K    ++ R+ + +N +IS   + G    A++ F  M   G+  D   L S 
Sbjct: 218 LGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSL 277

Query: 93  LTASTSVKDARFGKQVQAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            +A     D   G+ V  ++ + GW +  +  G+A++D+YAKL  I  A+ MFD +PV++
Sbjct: 278 ASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRD 337

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPA-LGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           +V  N L++GY +  L +  + +   M    GL     T  ++L A + L A + G ++H
Sbjct: 338 AVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMH 397

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           A  I+   NL  DV++ + +I++Y KCG + +A+ +F     R  G        W +++ 
Sbjct: 398 ALSIKTGLNL--DVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGP-------WNAVIS 448

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
             G +G+  + + L+  M   G  PD V FV++++ACSH G V  G  +F  M   Y ++
Sbjct: 449 GVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIK 508

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
           P  +HY+C+VD+  RAG+LD A+  I  M  +       ++WGALL AC   G  E+GK+
Sbjct: 509 PIAKHYACMVDMFGRAGQLDDAFDFIRNMPIK----PDSAIWGALLGACRIHGNVEMGKV 564

Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A+Q   ELDP NVG YV++SN+YAK   WD + ++R L++ + L+K  G S IEV
Sbjct: 565 ASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEV 619



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 174/369 (47%), Gaps = 25/369 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +N ++S  CRN     A+  F  M + G+  D   + S L     + D      +
Sbjct: 133 RDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAM 192

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +  K G    +FV +A+ID+Y KL ++ +   +FD +  ++ V  N+++SG+ +    
Sbjct: 193 HLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQV 252

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
           A  +E+   M   G+  D  TL +L  A A       GR VH YM+R+  ++G D+   +
Sbjct: 253 ASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVG-DIIAGN 311

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           ++++MY K   +  A ++F+    R       D V W +++  Y +NG   E I +Y+ M
Sbjct: 312 AIVDMYAKLSKIEAAQRMFDSMPVR-------DAVSWNTLITGYMQNGLASEAIHVYDHM 364

Query: 289 LMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY--SCLVDLL 343
             + G KP +  FV+V+ A SH G ++ G       +H   ++ G   + Y  +C++DL 
Sbjct: 365 QKHEGLKPIQGTFVSVLPAYSHLGALQQGTR-----MHALSIKTGLNLDVYVGTCVIDLY 419

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPH 401
            + G+LD+A  L  +   R  G      W A++S    H  G   L   +  +   + P 
Sbjct: 420 AKCGKLDEAMLLFEQTPRRSTGP-----WNAVISGVGVHGHGAKALSLFSQMQQEGISPD 474

Query: 402 NVGIYVMLS 410
           +V    +L+
Sbjct: 475 HVTFVSLLA 483



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 118/246 (47%), Gaps = 19/246 (7%)

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
           F   AL+  Y +   + DA   FDE+  ++    NA+LSG C     A  + L   M   
Sbjct: 105 FASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVME 164

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G+  D  T+S++L  C  L        +H Y ++    L +++F+ +++I++YGK G++ 
Sbjct: 165 GVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKH--GLDDELFVCNAMIDVYGKLGMLE 222

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           +  +VF       +G  ++D+V W S++  + + G     ++++  M  +G  PD +  +
Sbjct: 223 EVRKVF-------DGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLL 275

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-----HYSCLVDLLCRAGELDKAWKLI 356
           ++ SA +  G +  G       VH Y +  G +       + +VD+  +  +++ A ++ 
Sbjct: 276 SLASAIAQCGDICGGRS-----VHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMF 330

Query: 357 NEMLDR 362
           + M  R
Sbjct: 331 DSMPVR 336


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 241/489 (49%), Gaps = 68/489 (13%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLK-------FLNPRNPLPF 54
           +H+H  E GL     ++  + L+  Y  C          NC++        ++ R+ + +
Sbjct: 302 IHSHISERGLETD--VVVANALITMYCKC----------NCIQDARETFDRMSKRDVISW 349

Query: 55  NVVISDFCRNG-----SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           + +I+ + ++G     S     +    M   G+F +     S L A +       G+Q+ 
Sbjct: 350 SAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIH 409

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD------------------------ 145
           A ++K G+ S   + +A+ ++YAK   I++AE +F                         
Sbjct: 410 AEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLT 469

Query: 146 -------EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
                  E+  +N V  N +++GY ++   A   EL+  M   G   D  T+ ++L AC 
Sbjct: 470 SAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACG 529

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            LSA E G+ VHA  ++    L +D  + +SLI MY KCG VT+A  VF+          
Sbjct: 530 ALSALERGKLVHAEAVK--LGLESDTVVATSLIGMYSKCGEVTEARTVFDKIS------- 580

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
           N+D V W +ML  YG++G   E + L++ ML     P+E+ F  VISAC   G V+ G E
Sbjct: 581 NRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGRE 640

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            F  M  D++++PG +HY C+VDLL RAG L +A     E + R      +S+W ALL A
Sbjct: 641 IFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEA----EEFIQRMPCEPDISVWHALLGA 696

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           C      +L + AA   L L+P N  +YV LSN+YA+   WD+  ++R++M +KGLKKD 
Sbjct: 697 CKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDR 756

Query: 439 GCSWIEVTG 447
           G S IE+ G
Sbjct: 757 GESSIEIDG 765



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 186/409 (45%), Gaps = 25/409 (6%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           ++ ++    + +  R+ + ++ +I+ +  N  P  A  TF  M    I  +     S L 
Sbjct: 128 DVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILK 187

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A  +       +++   V  SG  + V V +ALI +Y+K   I  A  +F ++  +N V 
Sbjct: 188 ACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVS 247

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
             A++    + +      EL   M   G+  +  T  +LL +C    A   GR++H+++ 
Sbjct: 248 WTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHIS 307

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
            +   L  DV + ++LI MY KC  +  A + F+    R       DV+ W++M+  Y +
Sbjct: 308 ER--GLETDVVVANALITMYCKCNCIQDARETFDRMSKR-------DVISWSAMIAGYAQ 358

Query: 275 NGY-----FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
           +GY       EV +L E M   G  P++V F++++ ACS  G ++ G +     +     
Sbjct: 359 SGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQ-IHAEISKVGF 417

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           E      + + ++  + G + +A ++ ++M ++     +V  W +LL+    CG      
Sbjct: 418 ESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK-----NVVAWASLLTMYIKCGDL---- 468

Query: 390 LAAQKAL-ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
            +A+K   E+   NV  + ++   YA+     ++ +L   MK +G + D
Sbjct: 469 TSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPD 517



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 146/327 (44%), Gaps = 23/327 (7%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
            C+ G    A++    +   G+ +++      +     ++    GK V   + + G    
Sbjct: 53  LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAID 112

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +++G++LI+ Y+K   +   E +F  + +++ V  +++++ Y      A   +    M  
Sbjct: 113 IYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             ++ +  T  ++L+AC   S  E  R++H  +  K   +  DV + ++LI MY KCG +
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVV--KASGMETDVAVATALITMYSKCGEI 230

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
           + A ++F     R       +VV WT+++    ++    E  +LYE ML  G  P+ V F
Sbjct: 231 SLACEIFQKMKER-------NVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTF 283

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLI 356
           V+++++C+    +  G       +H +  E G E      + L+ + C+   +  A +  
Sbjct: 284 VSLLNSCNTPEALNRGRR-----IHSHISERGLETDVVVANALITMYCKCNCIQDARETF 338

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCG 383
           + M  R      V  W A+++     G
Sbjct: 339 DRMSKR-----DVISWSAMIAGYAQSG 360


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 248/449 (55%), Gaps = 29/449 (6%)

Query: 2   VHAH----QFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVV 57
           +HAH     FE  L+L+  I+        Y  C    +L    +    +  ++ + + V+
Sbjct: 127 IHAHIQSSTFEDDLVLLNFILNM------YAKC---GSLEEAQDLFDKMPTKDMVSWTVL 177

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           IS + ++G    AL  F  M   G   + + L S L AS +      G+Q+ A   K G+
Sbjct: 178 ISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGY 237

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
             +V VGS+L+D+YA+   + +A+++F+ +  KN V  NAL++G+         + L   
Sbjct: 238 DMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQ 297

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV-FMQSSLIEMYGK 236
           M   G +  HFT S++  ACA   + E G+ VHA++I+     G  + ++ ++LI+MY K
Sbjct: 298 MLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSG---GQPIAYIGNTLIDMYAK 354

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
            G +  A +VF     RL   + +D+V W S++  Y ++G   E ++L+E ML    +P+
Sbjct: 355 SGSIKDAKKVFR----RL---VKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPN 407

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
           E+ F++V++ACSH+G +  G  YFE M   +K+E    H+  +VDLL RAG L++A K I
Sbjct: 408 EITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFI 466

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
            EM  +     + ++WGALL +C      +LG  AA++  ELDPH+ G +V+LSN+YA  
Sbjct: 467 EEMPIK----PTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASA 522

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
               +  ++R++MKE G+KK+  CSW+E+
Sbjct: 523 GRLSDAAKVRKMMKESGVKKEPACSWVEI 551



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 179/354 (50%), Gaps = 28/354 (7%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L   T ++  + G+ + AH+  S +   + + + ++++YAK   + +A+ +FD++P K+ 
Sbjct: 112 LNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDM 171

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V    L+SGY ++   +  L L   M  LG   + FTLS+LL+A     +   GRQ+HA+
Sbjct: 172 VSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAF 231

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLEGEINKDVVLWTSMLGV 271
            ++   ++  +V + SSL++MY +   + +A  +FN LA         K+VV W +++  
Sbjct: 232 SLKYGYDM--NVHVGSSLLDMYARWAHMREAKVIFNSLAA--------KNVVSWNALIAG 281

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           + R G  + V++L+  ML  G +P    + +V +AC+ +G ++ G    +W VH + ++ 
Sbjct: 282 HARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQG----KW-VHAHVIKS 336

Query: 332 G--PEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKF 385
           G  P  Y  + L+D+  ++G +  A K+   ++ +      +  W +++S  A H  G  
Sbjct: 337 GGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQ-----DIVSWNSIISGYAQHGLGAE 391

Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439
            L         ++ P+ +    +L+   +   + DE     ELMK+  ++  V 
Sbjct: 392 ALQLFEQMLKAKVQPNEITFLSVLTAC-SHSGLLDEGQYYFELMKKHKIEAQVA 444


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 146/399 (36%), Positives = 218/399 (54%), Gaps = 13/399 (3%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           N  + + +N ++S + ++      L+ F+ MH  G   D + L + L     +     GK
Sbjct: 485 NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGK 544

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           QV A+  KSG+   ++V S ++D+Y K   +  A+  FD IPV + V    L+SG  E  
Sbjct: 545 QVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENG 604

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L +   M  +G+  D FT++ L +A + L+A E GRQ+HA  ++  C   +D F+
Sbjct: 605 EEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT--SDPFV 662

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +SL++MY KCG +  A  +F     R+E     ++  W +ML    ++G  KE ++L++
Sbjct: 663 GTSLVDMYAKCGSIDDAYCLFK----RIE---MMNITAWNAMLVGLAQHGEGKEALQLFK 715

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M   G KPD+V F+ V+SACSH+G V    +Y   M  DY ++P  EHYSCL D L RA
Sbjct: 716 QMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRA 775

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G + +A  LI+ M       +S SM+  LL+AC   G  E GK  A K LEL+P +   Y
Sbjct: 776 GLVKEAENLIDSM----SMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAY 831

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           V+LSN+YA    WDE+   R +MK   +KKD G SWIEV
Sbjct: 832 VLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEV 870



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 149/338 (44%), Gaps = 27/338 (7%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N ++S +   G     LK F  M    +  D       L  +  +     G+QV     K
Sbjct: 291 NKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALK 350

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            G    + V ++LI++Y KL  I  A  +F+ +  ++ +  N++++G  ++ L    + L
Sbjct: 351 LGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCL 410

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
              +   GL  DH+T++++L+A + L       +Q+H + I+   N   D F+ ++LI+ 
Sbjct: 411 FMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIK--TNNVADSFVSTALIDA 468

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y +   + +A  +F        G  N D+V W +M+  Y ++    + ++L+  M   G 
Sbjct: 469 YSRNRCMKEAEVLF--------GRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGE 520

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           + D+    TV+  C     +  G +     VH Y ++ G +     +DL   +G LD   
Sbjct: 521 RSDDFTLATVLKTCGFLFAINQGKQ-----VHAYAIKSGYD-----LDLWVSSGILDMYV 570

Query: 354 KLINEMLDRGHGSSSVSM-----WGALLSACHDCGKFE 386
           K   +M        S+ +     W  L+S C + G+ E
Sbjct: 571 K-CGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEE 607



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 102/234 (43%), Gaps = 25/234 (10%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L  + S  D   GK   A +         F+ + LI +Y+K   +  A  +FD++P ++ 
Sbjct: 53  LRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDL 112

Query: 153 VCANALLSGYCEAKLWAGGLE-------LVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
           V  N++L+ Y ++    G +E       L R++    +     TLS +L+ C        
Sbjct: 113 VSWNSILAAYAQSS--EGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCA 170

Query: 206 GRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
               H Y     C +G   D F+  +L+ +Y K G V +   +F    +R       DVV
Sbjct: 171 SESFHGY----ACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-------DVV 219

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA--FVTVISA-CSHTGQVK 314
           LW  ML  Y   G+ +E I L  A   +G  P+E+    ++ IS   S  GQVK
Sbjct: 220 LWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVK 273



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D   V   +  N +LSGY  A  ++  L+    M    L+ D  T   +L     L +  
Sbjct: 280 DASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLA 339

Query: 205 FGRQVHAYMIRKCCNLGNDVFM--QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            G+QVH   ++    LG D+ +   +SLI MY K   +  A  VFN    R       D+
Sbjct: 340 LGQQVHCMALK----LGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSER-------DL 388

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           + W S++    ++    E + L+  +L  G KPD     +V+ A S
Sbjct: 389 ISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAAS 434



 Score = 42.4 bits (98), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 50/245 (20%)

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
           FV  AL+++Y K   + +  ++F+E+P ++ V  N +L  Y E       ++L       
Sbjct: 188 FVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTS 247

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           GL  +  TL  L R     S A    QV ++        GND    S +I          
Sbjct: 248 GLHPNEITLRLLSRISGDDSEAG---QVKSF------ENGNDASAVSEIISR-------- 290

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
                            NK       +L  Y   G +  ++K +  M+ +  + D+V F+
Sbjct: 291 -----------------NK-------ILSGYLHAGQYSALLKCFMDMVESDLECDQVTFI 326

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLIN 357
            V++       + LG +     VH   L+ G +      + L+++ C+  ++  A  + N
Sbjct: 327 LVLATAVRLDSLALGQQ-----VHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFN 381

Query: 358 EMLDR 362
            M +R
Sbjct: 382 NMSER 386


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 233/431 (54%), Gaps = 17/431 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I   S L+  Y  CR    +    N     N  + + F  +IS +  NG  + +L+ F +
Sbjct: 375 IFLTSALIDAYFKCR---GVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRW 431

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           +    I  +   L S L     +   + G+++   + K G+ +   +G A+ID+YAK   
Sbjct: 432 LVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 491

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           ++ A  +F+ +  ++ V  N++++   ++   +  +++ R M   G+ YD  ++SA L A
Sbjct: 492 MNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSA 551

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA L +  FG+ +H +MI+   +L +DV+ +S+LI+MY KCG +  A+ VF         
Sbjct: 552 CANLPSESFGKAIHGFMIKH--SLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE---- 605

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKL 315
              K++V W S++   G +G  K+ + L+  M+  +G +PD++ F+ +IS+C H G V  
Sbjct: 606 ---KNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDE 662

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G+ +F  M  DY ++P  EHY+C+VDL  RAG L +A++ +  M           +WG L
Sbjct: 663 GVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSM----PFPPDAGVWGTL 718

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L AC      EL ++A+ K ++LDP N G YV++SN +A    W+ + ++R LMKE+ ++
Sbjct: 719 LGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQ 778

Query: 436 KDVGCSWIEVT 446
           K  G SWIE+ 
Sbjct: 779 KIPGYSWIEIN 789



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 178/385 (46%), Gaps = 30/385 (7%)

Query: 10  GLLLICLIIFQ----SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNG 65
           GL+++  + F+    + L+  Y+ C    +   L    + ++  + + +N +IS + ++G
Sbjct: 263 GLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKL---FRMMSRADTVTWNCMISGYVQSG 319

Query: 66  SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGS 125
               +L  F  M   G+  D     S L + +  ++  + KQ+  ++ +      +F+ S
Sbjct: 320 LMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTS 379

Query: 126 ALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY 185
           ALID Y K   +  A+ +F +    + V   A++SGY    L+   LE+ R +  + +  
Sbjct: 380 ALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISP 439

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKC----CNLGNDVFMQSSLIEMYGKCGLVT 241
           +  TL ++L     L A + GR++H ++I+K     CN+G       ++I+MY KCG + 
Sbjct: 440 NEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIG------CAVIDMYAKCGRMN 493

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A ++F     R       D+V W SM+    ++      I ++  M ++G   D V+  
Sbjct: 494 LAYEIFERLSKR-------DIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSIS 546

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
             +SAC++      G     +M+  + L       S L+D+  + G L  A  +   M +
Sbjct: 547 AALSACANLPSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE 605

Query: 362 RGHGSSSVSMWGALLSACHDCGKFE 386
           +     ++  W ++++AC + GK +
Sbjct: 606 K-----NIVSWNSIIAACGNHGKLK 625



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 159/330 (48%), Gaps = 23/330 (6%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +NV+++ + + G+    +K FS M +  I  +       L+   S      G Q+   V 
Sbjct: 207 WNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVV 266

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            SG      + ++L+ +Y+K     DA  +F  +   ++V  N ++SGY ++ L    L 
Sbjct: 267 VSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLT 326

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M + G+  D  T S+LL + +     E+ +Q+H Y++R   +L  D+F+ S+LI+ 
Sbjct: 327 FFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISL--DIFLTSALIDA 384

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KC  V+ A  +F+          + DVV++T+M+  Y  NG + + ++++  ++    
Sbjct: 385 YFKCRGVSMAQNIFSQCN-------SVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKI 437

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGEL 349
            P+E+  V+++        +KLG E     +H + ++ G ++       ++D+  + G +
Sbjct: 438 SPNEITLVSILPVIGILLALKLGRE-----LHGFIIKKGFDNRCNIGCAVIDMYAKCGRM 492

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           + A+++   +  R      +  W ++++ C
Sbjct: 493 NLAYEIFERLSKR-----DIVSWNSMITRC 517



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 20/292 (6%)

Query: 22  RLMLPYTTCRHKKNLGTLTNCLKF-----LNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           R++  Y  C      G+ ++C K      L   +  P+N +IS F RNG    AL  +  
Sbjct: 75  RILGMYAMC------GSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFK 128

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D       + A  ++K+ +    +   V+  G   + FV S+LI  Y +   
Sbjct: 129 MLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGK 188

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I     +FD +  K+ V  N +L+GY +       ++   +M    +  +  T   +L  
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSV 248

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA     + G Q+H  ++    +    +  ++SL+ MY KCG    A ++F +       
Sbjct: 249 CASKLLIDLGVQLHGLVVVSGVDFEGSI--KNSLLSMYSKCGRFDDASKLFRMMSR---- 302

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               D V W  M+  Y ++G  +E +  +  M+ +G  PD + F +++ + S
Sbjct: 303 ---ADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 15/223 (6%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           LS LL+AC+  +    G+QVHA++I    ++  D +    ++ MY  CG  +   ++F  
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVN--SISGDSYTDERILGMYAMCGSFSDCGKMF-- 93

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
             +RL+      +  W S++  + RNG   + +  Y  ML  G  PD   F  ++ AC  
Sbjct: 94  --YRLDLR-RSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVA 150

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
               K GI++    V    ++      S L+      G++D   KL + +L +       
Sbjct: 151 LKNFK-GIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQK-----DC 204

Query: 370 SMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYVMLS 410
            +W  +L+    CG  +  +   +  +  ++ P+ V    +LS
Sbjct: 205 VIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLS 247



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 117/288 (40%), Gaps = 21/288 (7%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA--NALLS 160
           R GKQV A +  +      +    ++ +YA      D   MF  + ++ S     N+++S
Sbjct: 52  RQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIIS 111

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            +    L    L     M   G+  D  T   L++AC  L       +   ++     +L
Sbjct: 112 SFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALK----NFKGIDFLSDTVSSL 167

Query: 221 GNDV--FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           G D   F+ SSLI+ Y + G +    ++F+         + KD V+W  ML  Y + G  
Sbjct: 168 GMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV-------LQKDCVIWNVMLNGYAKCGAL 220

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
             VIK +  M M+   P+ V F  V+S C+    + LG++    +V       G    S 
Sbjct: 221 DSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNS- 279

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           L+ +  + G  D A KL   M+ R    +    W  ++S     G  E
Sbjct: 280 LLSMYSKCGRFDDASKLF-RMMSRADTVT----WNCMISGYVQSGLME 322


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 141/415 (33%), Positives = 227/415 (54%), Gaps = 29/415 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I+ + R G    AL  +  M V GI  D   +   +++   ++D   G++ 
Sbjct: 143 RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRES 202

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE----------------LMFDEIPVKNS 152
             ++ ++G   +V + +AL+D+Y K   +  A                 ++FDE+P K+ 
Sbjct: 203 HCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDV 262

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  NA++ GY  A      L L   M A+ ++ D  T+ + L AC+ L A + G  +H Y
Sbjct: 263 VPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHY 322

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           + +    L  +V + ++LI+MY KCG +TKA+QVF      L G   ++ + WT+++   
Sbjct: 323 IEKH--ELSLNVALGTALIDMYAKCGKITKAIQVF----QELPG---RNSLTWTAIISGL 373

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
             +G     I  +  M+ N   PDEV F+ ++SAC H G V+ G +YF  M   + L P 
Sbjct: 374 ALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPK 433

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
            +HYSC+VDLL RAG L++A +LI  M       +   +WGAL  AC   G   +G+ AA
Sbjct: 434 LKHYSCMVDLLGRAGLLEEAEELIKSM----PIEADAVVWGALFFACRIHGNVLMGERAA 489

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            K L++DPH+ GIYV+L+N+Y +  MW E G+ R+LM+++G++K  GCS IEV G
Sbjct: 490 SKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNG 544



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 172/372 (46%), Gaps = 22/372 (5%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPF--NVVISDFCRNGSPLYALKTFS- 75
           F S  ++ +      ++L   TN L   N RNP  F  NV I  F  + +P  A+  +  
Sbjct: 11  FASSRLIAFCAISEWRDLDYCTNIL--FNTRNPNTFSWNVAIRGFLDSENPREAVVLYKR 68

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            +   G   D Y       A   +   R G ++  HV   G+ S +FV +A+I L     
Sbjct: 69  VLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCG 128

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
            +  A  MFD+  V++ V  N++++GY         L   R M   G+  D  T+  ++ 
Sbjct: 129 DLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVS 188

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR-- 253
           +CA L   + GR+ H Y+      L   V + ++L++MY KCG +  A ++F+   ++  
Sbjct: 189 SCAQLEDLDLGRESHCYIEENGLKL--TVPLANALMDMYMKCGNLESARKLFDSMTNKTM 246

Query: 254 -------LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
                   +   +KDVV W +M+G Y      KE + L+  M      PDEV  V+ +SA
Sbjct: 247 VSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSA 306

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
           CS  G + +GI +    +  ++L       + L+D+  + G++ KA ++  E+     G 
Sbjct: 307 CSQLGALDVGI-WIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQEL----PGR 361

Query: 367 SSVSMWGALLSA 378
           +S++ W A++S 
Sbjct: 362 NSLT-WTAIISG 372


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 226/403 (56%), Gaps = 13/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+ L  ++ + +  +I+ + ++     AL  F  M   GI+ D   L S+++    +   
Sbjct: 403 LEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAM 462

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G Q+ A +  SG+   V + +AL++LYA+   I +A   F+EI  K+ +  N L+SG+
Sbjct: 463 RQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGF 522

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            ++ L    L++   M   G+ ++ FT  + L A A L+  + G+Q+HA +I+   +   
Sbjct: 523 AQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFET 582

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +V   ++LI +YGKCG    A   F+    R E       V W +++    ++G   E +
Sbjct: 583 EV--GNALISLYGKCGSFEDAKMEFSEMSERNE-------VSWNTIITSCSQHGRGLEAL 633

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L++ M   G KP++V F+ V++ACSH G V+ G+ YF+ M  +Y + P P+HY+C++D+
Sbjct: 634 DLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDI 693

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
             RAG+LD+A K I EM      ++   +W  LLSAC      E+G+ AA+  LEL+PH+
Sbjct: 694 FGRAGQLDRAKKFIEEMPI----AADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHD 749

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              YV+LSN YA    W    Q+R++M+++G++K+ G SWIEV
Sbjct: 750 SASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEV 792



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 183/369 (49%), Gaps = 21/369 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+ + +  ++S + +NG    AL  +  MH  G+    Y L S L++ T  +    G
Sbjct: 103 LSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + + A   K G+ S +FVG+A+I LY +      AE +F ++P +++V  N L+SG+ + 
Sbjct: 163 RLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC 222

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 LE+   M   GL  D  T+S+LL ACA L   + G Q+H+Y+ +    + +D  
Sbjct: 223 GHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFK--AGISSDYI 280

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           M+ SL+++Y KCG V  AL +FN +          +VVLW  ML  +G+     +  +L+
Sbjct: 281 MEGSLLDLYVKCGDVETALVIFNSSD-------RTNVVLWNLMLVAFGQINDLAKSFELF 333

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVD 341
             M   G +P++  +  ++  C+ T ++ LG +     +H   ++ G E        L+D
Sbjct: 334 CQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ-----IHSLSVKTGFESDMYVSGVLID 388

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           +  + G L+KA +++ EML      S  SM    +   H+C K  L      +   + P 
Sbjct: 389 MYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGYVQ--HECCKDALAAFKEMQKCGIWPD 445

Query: 402 NVGIYVMLS 410
           N+G+   +S
Sbjct: 446 NIGLASAIS 454



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 178/390 (45%), Gaps = 32/390 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPR---NPLPFNVV 57
            +H++ F+ G+      I +  L+  Y  C      G +   L   N     N + +N++
Sbjct: 265 QLHSYLFKAGI--SSDYIMEGSLLDLYVKC------GDVETALVIFNSSDRTNVVLWNLM 316

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           +  F +      + + F  M   GI  + +     L   T  ++   G+Q+ +   K+G+
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            S ++V   LID+Y+K   +  A  + + +  K+ V   ++++GY + +     L   + 
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  D+  L++ +  CAG++A   G Q+HA +         DV + ++L+ +Y +C
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY--VSGYSGDVSIWNALVNLYARC 494

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G + +A   F    H       KD + W  ++  + ++G  +E +K++  M  +G K + 
Sbjct: 495 GRIREAFSSFEEIEH-------KDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMV---HDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
             FV+ +SA ++  ++K G +    ++   H ++ E G    + L+ L  + G  + A  
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVG----NALISLYGKCGSFEDAKM 603

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGK 384
             +EM +R   S     W  ++++C   G+
Sbjct: 604 EFSEMSERNEVS-----WNTIITSCSQHGR 628



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 136/277 (49%), Gaps = 25/277 (9%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++ A     G      VG+ LIDLY+K  L+  A  +F+E+  +++V   A+LSGY +  
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L    L L R M   G+    + LS++L +C        GR +HA   +      +++F+
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKH--GFCSEIFV 180

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +++I +Y +CG    A +VF    HR       D V + +++  + + G+ +  ++++E
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHR-------DTVTFNTLISGHAQCGHGEHALEIFE 233

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-----DYKLEPGPEHYSCLVD 341
            M  +G  PD V   ++++AC+  G ++ G +   ++       DY +E        L+D
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIME------GSLLD 287

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           L  + G+++ A  + N   DR    ++V +W  +L A
Sbjct: 288 LYVKCGDVETALVIFNSS-DR----TNVVLWNLMLVA 319


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 151/445 (33%), Positives = 235/445 (52%), Gaps = 18/445 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +H    + GLL    +   + L+  Y+ C   ++L            RN + ++ +++ 
Sbjct: 242 QIHCITIKNGLL--GFVALSNALVTMYSKC---ESLNEACKMFDSSGDRNSITWSAMVTG 296

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +NG  L A+K FS M   GI    Y +   L A + +     GKQ+ + + K G+   
Sbjct: 297 YSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERH 356

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +F  +AL+D+YAK   + DA   FD +  ++     +L+SGY +       L L R M  
Sbjct: 357 LFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKT 416

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  +  T++++L+AC+ L+  E G+QVH + I+     G +V + S+L  MY KCG  
Sbjct: 417 AGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH--GFGLEVPIGSALSTMYSKCG-- 472

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             +L+  NL   R     NKDVV W +M+     NG   E ++L+E ML  G +PD+V F
Sbjct: 473 --SLEDGNLVFRRTP---NKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTF 527

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V +ISACSH G V+ G  YF  M     L+P  +HY+C+VDLL RAG+L +A + I E  
Sbjct: 528 VNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFI-ESA 586

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
           +  HG   + +W  LLSAC + GK ELG  A +K + L       YV LS +Y       
Sbjct: 587 NIDHG---LCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMR 643

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
           ++ ++ + M+  G+ K+VGCSWIE+
Sbjct: 644 DVERVWKHMRANGVSKEVGCSWIEL 668



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 164/340 (48%), Gaps = 30/340 (8%)

Query: 49  RNPLPFNVVISDFCRNG---SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ + +N +I+ + +NG   S    ++ F  M    I  + Y L     A +S++ +  G
Sbjct: 78  KDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVG 137

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q  A V K      ++V ++L+ +Y K  L+ D   +F  +P +N+   + ++SGY   
Sbjct: 138 RQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATR 197

Query: 166 KLWAGGLELVRLM---PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                 +++  L       G D D +  +A+L + A       GRQ+H   I+    L  
Sbjct: 198 GRVEEAIKVFNLFLREKEEGSDSD-YVFTAVLSSLAATIYVGLGRQIHCITIKN--GLLG 254

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            V + ++L+ MY KC  + +A ++F+ +G R       + + W++M+  Y +NG   E +
Sbjct: 255 FVALSNALVTMYSKCESLNEACKMFDSSGDR-------NSITWSAMVTGYSQNGESLEAV 307

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
           KL+  M   G KP E   V V++ACS    ++ G +     +H + L+ G E +    + 
Sbjct: 308 KLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQ-----LHSFLLKLGFERHLFATTA 362

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           LVD+  +AG L  A K  + + +R      V++W +L+S 
Sbjct: 363 LVDMYAKAGCLADARKGFDCLQER-----DVALWTSLISG 397



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 190/421 (45%), Gaps = 58/421 (13%)

Query: 45  FLNPRNPLPFNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDT----YALCSSLTASTSV 99
           ++  RN   ++ ++S +   G    A+K F+ F+       D+     A+ SSL A+  V
Sbjct: 178 YMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYV 237

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
                G+Q+     K+G L  V + +AL+ +Y+K   +++A  MFD    +NS+  +A++
Sbjct: 238 G---LGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMV 294

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           +GY +       ++L   M + G+    +T+  +L AC+ +   E G+Q+H+++++    
Sbjct: 295 TGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLK--LG 352

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
               +F  ++L++MY K G +  A + F+    R       DV LWTS++  Y +N   +
Sbjct: 353 FERHLFATTALVDMYAKAGCLADARKGFDCLQER-------DVALWTSLISGYVQNSDNE 405

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLE-------- 330
           E + LY  M   G  P++    +V+ ACS    ++LG +     + H + LE        
Sbjct: 406 EALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALS 465

Query: 331 -------------------PGPE--HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
                              P  +   ++ ++  L   G+ D+A +L  EML  G     V
Sbjct: 466 TMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDV 525

Query: 370 SMWGALLSACHDCGKFELGKL---AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLR 426
           +    ++SAC   G  E G          + LDP  V  Y  + +L ++       GQL+
Sbjct: 526 TFVN-IISACSHKGFVERGWFYFNMMSDQIGLDP-KVDHYACMVDLLSR------AGQLK 577

Query: 427 E 427
           E
Sbjct: 578 E 578



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 173/363 (47%), Gaps = 33/363 (9%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           T  L   LT  +  ++   G+ V   + ++G  + +   + L++ YAK   +  A  +F+
Sbjct: 14  TSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFN 73

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGG---LELVRLMPALGLDYDHFTLSALLRACAGLSA 202
            I  K+ V  N+L++GY +    +     ++L R M A  +  + +TL+ + +A + L +
Sbjct: 74  AIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQS 133

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
           +  GRQ HA ++ K  + G D+++ +SL+ MY K GLV   L+VF     R       + 
Sbjct: 134 STVGRQAHALVV-KMSSFG-DIYVDTSLVGMYCKAGLVEDGLKVFAYMPER-------NT 184

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLM---NGTKPDEVAFVTVISACSHTGQVKLGIEY 319
             W++M+  Y   G  +E IK++   L     G+  D V F  V+S+ + T  V LG + 
Sbjct: 185 YTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQ- 242

Query: 320 FEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
               +H   ++ G   +    + LV +  +   L++A K+ +   DR    +S++ W A+
Sbjct: 243 ----IHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDR----NSIT-WSAM 293

Query: 376 LSACHDCGK-FELGKLAAQK-ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ++     G+  E  KL ++  +  + P    I  +L N  +  C  +E  QL   + + G
Sbjct: 294 VTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVL-NACSDICYLEEGKQLHSFLLKLG 352

Query: 434 LKK 436
            ++
Sbjct: 353 FER 355


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 219/402 (54%), Gaps = 20/402 (4%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           + + +N +IS + R G P  AL+ F  M    + LD   L ++L AS      + G+   
Sbjct: 160 DTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCH 219

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           + V  +G   + ++GS+LI +YAK  L+ DA  +F  +  +N VC  +++SGY +   + 
Sbjct: 220 SLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFK 279

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN---LGNDVFM 226
             + L R M   G+  D  T++ ++ +CA + A + GR VHAY     C+   LG ++ +
Sbjct: 280 EAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAY-----CDVHGLGKELSV 334

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           ++SLI+MY KCG + KA ++F        G   +DV  WT+M+  +  NG   E + L+ 
Sbjct: 335 KNSLIDMYSKCGDINKAHEIFC-------GLTKRDVFSWTAMIMGFTVNGLCSEALDLFA 387

Query: 287 AMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
            M   G   P+EV F+ V+++CSH G V+ G  YF+ M   YKL P  EHY C+VDLL R
Sbjct: 388 QMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCMVDLLGR 447

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           A  L +A + I  M      +  V +W +LL AC  CG+  L +  A++ LEL+P     
Sbjct: 448 AKLLTEAEQFIKNMPI----APDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAG 503

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +V+LSN+YA    W ++ +LR  M    + K  GCS+IEV G
Sbjct: 504 HVLLSNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVDG 545



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 17/203 (8%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           D+++L+    A + L +   G Q+H+  ++    L +D F+ +SLI MY  C     A Q
Sbjct: 92  DNYSLNIAFSATSRLPSVSVGAQLHSLSVK--LGLVSDTFVLNSLINMYSSCSYPATARQ 149

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
           V + A    +G    D V W +++  Y R G   + ++ +  M+      D+V  +  + 
Sbjct: 150 VLDSAP---QGAC--DTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALV 204

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRG 363
           A +  G+VK+G      +V +     G   Y  S L+ +  + G ++ A K+ + M +R 
Sbjct: 205 ASAKAGKVKVGRLCHSLVVVN---GAGINCYMGSSLISMYAKCGLVEDARKVFHGMHER- 260

Query: 364 HGSSSVSMWGALLSACHDCGKFE 386
               +V  W +++S     GKF+
Sbjct: 261 ----NVVCWTSMISGYTQLGKFK 279



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN + +  +IS + + G    A+  F  M + G+ +D   + + +++   +     G
Sbjct: 257 MHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLG 316

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + V A+    G    + V ++LID+Y+K   I+ A  +F  +  ++     A++ G+   
Sbjct: 317 RYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVN 376

Query: 166 KLWAGGLELVRLMPALG-LDYDHFTLSALLRACA--GLSAAEFGRQVHAYMIRKCCNLGN 222
            L +  L+L   M   G +  +  T   +L +C+  GL    F       M+ K   L  
Sbjct: 377 GLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYK---LAP 433

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
            +     ++++ G+  L+T+A Q            I  DVV+W S+L
Sbjct: 434 RIEHYGCMVDLLGRAKLLTEAEQFIK------NMPIAPDVVVWRSLL 474



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 13/219 (5%)

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
           G +L  L   LGL  D F L++L+   +  S     RQV     +  C    D    +++
Sbjct: 112 GAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVLDSAPQGAC----DTVSWNTI 167

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           I  Y + G+  KALQ F   G  ++ ++  D V   + L    + G  K     +  +++
Sbjct: 168 ISGYLRGGMPNKALQAF---GQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVVV 224

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           NG   +     ++IS  +  G V+   + F  M H+  +      ++ ++    + G+  
Sbjct: 225 NGAGINCYMGSSLISMYAKCGLVEDARKVFHGM-HERNVVC----WTSMISGYTQLGKFK 279

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           +A  L  +M   G      ++   ++S+C   G  +LG+
Sbjct: 280 EAVNLFRDMQITGMKVDDGTI-ATVVSSCAQMGALDLGR 317


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 137/394 (34%), Positives = 219/394 (55%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I+ +  N     A+  F  M   G+ ++   +   +          FG  + A   
Sbjct: 127 YNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSV 186

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           + G    + VG+ L+ +Y +   +  A  +FD +P K  +  NA++SGY +  L    L+
Sbjct: 187 RFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLD 246

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R M   G+  D  TL  +L +CA L A   GR+V   +  +    G + F++++LI M
Sbjct: 247 LYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRI--ELSGFGFNPFLKNALINM 304

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y +CG + KA  +F       +G   K+V+ WT+++  YG +G  +  ++L++ M+ +  
Sbjct: 305 YARCGNLVKARAIF-------DGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDE 357

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            PD  AFV+V+SACSH G  + G+ YF  M  DY L+PGPEHYSC+VDLL RAG L++A 
Sbjct: 358 LPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEAR 417

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           KLI  M     G    ++WGALL AC      EL +LA +K +E +P N+G YV+LSN++
Sbjct: 418 KLIGSMSVEPDG----AVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIF 473

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           ++    + I ++R +M+E+ LKK+ GCS++E  G
Sbjct: 474 SEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQG 507



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 153/342 (44%), Gaps = 20/342 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N  + +  R      AL  +  M   G   + +    +  +  S+     G Q+  HV 
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN--SVCANALLSGYCEAKLWAGG 171
           K+G     FV ++LI +Y K   I  A  +FDE       +VC NAL++GY     ++  
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           + L R M   G+  +  T+  L+  CAG     FG  +HA  +R    L  D+ + + L+
Sbjct: 144 VLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVR--FGLDGDLSVGNCLL 201

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
            MY +CG V  A ++F       +G   K ++ W +M+  Y +NG    V+ LY  M   
Sbjct: 202 TMYVRCGSVDFARKLF-------DGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFT 254

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G  PD V  V V+S+C+H G    G E  E  +        P   + L+++  R G L K
Sbjct: 255 GIVPDPVTLVGVLSSCAHLGAHAAGRE-VEQRIELSGFGFNPFLKNALINMYARCGNLVK 313

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           A  + + M ++     +V  W A+++     G    G+LA Q
Sbjct: 314 ARAIFDGMTEK-----NVISWTAIIAG---YGMHGQGELAVQ 347



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 134/317 (42%), Gaps = 19/317 (5%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +IS + +NG   + L  +  M   GI  D   L   L++   +     G++V+  
Sbjct: 226 ITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQR 285

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           +  SG+  + F+ +ALI++YA+   +  A  +FD +  KN +   A+++GY         
Sbjct: 286 IELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELA 345

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           ++L   M +     D     ++L AC+     E G      M R    L       S ++
Sbjct: 346 VQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERD-YGLQPGPEHYSCVV 404

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV--YGRNGYFKEVIKLYEAML 289
           ++ G+ G + +A ++           +  D  +W ++LG     RN    E+   +E ++
Sbjct: 405 DLLGRAGRLEEARKLIG------SMSVEPDGAVWGALLGACKIHRNVELAELA--FEKVI 456

Query: 290 MNGTKPDEVAFVTVISAC-SHTGQVKLGIEYFEWMVHDYKL--EPGPEH--YSCLVDLLC 344
               +P  + +  ++S   S  G ++ GI     M+ + KL  EPG  +  Y   + L  
Sbjct: 457 E--FEPTNIGYYVLLSNIFSEAGNME-GILRVRVMMRERKLKKEPGCSYVEYQGRIHLFL 513

Query: 345 RAGELDKAWKLINEMLD 361
                    + I  MLD
Sbjct: 514 AGDRTHPQAQEIYHMLD 530



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 1/102 (0%)

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           ++      W + L    R  +F+E + LY  ML +G  P+   F     +C+    + L 
Sbjct: 16  DLQNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASL-SLPLA 74

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
                  V     EP P   + L+ + C+   +  A K+ +E
Sbjct: 75  GSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDE 116


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 226/403 (56%), Gaps = 13/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+ L  ++ + +  +I+ + ++     AL  F  M   GI+ D   L S+++    +   
Sbjct: 403 LEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAM 462

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G Q+ A +  SG+   V + +AL++LYA+   I +A   F+EI  K+ +  N L+SG+
Sbjct: 463 RQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGF 522

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            ++ L    L++   M   G+ ++ FT  + L A A L+  + G+Q+HA +I+   +   
Sbjct: 523 AQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFET 582

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +V   ++LI +YGKCG    A   F+    R E       V W +++    ++G   E +
Sbjct: 583 EV--GNALISLYGKCGSFEDAKMEFSEMSERNE-------VSWNTIITSCSQHGRGLEAL 633

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L++ M   G KP++V F+ V++ACSH G V+ G+ YF+ M  +Y + P P+HY+C++D+
Sbjct: 634 DLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDI 693

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
             RAG+LD+A K I EM      ++   +W  LLSAC      E+G+ AA+  LEL+PH+
Sbjct: 694 FGRAGQLDRAKKFIEEMPI----AADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHD 749

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              YV+LSN YA    W    Q+R++M+++G++K+ G SWIEV
Sbjct: 750 SASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEV 792



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 183/369 (49%), Gaps = 21/369 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+ + +  ++S + +NG    AL  +  MH  G+    Y L S L++ T  +    G
Sbjct: 103 LSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + + A   K G+ S +FVG+A+I LY +      AE +F ++P +++V  N L+SG+ + 
Sbjct: 163 RLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC 222

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 LE+   M   GL  D  T+S+LL ACA L   + G Q+H+Y+ +    + +D  
Sbjct: 223 GHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFK--AGISSDYI 280

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           M+ SL+++Y KCG V  AL +FN +          +VVLW  ML  +G+     +  +L+
Sbjct: 281 MEGSLLDLYVKCGDVETALVIFNSSD-------RTNVVLWNLMLVAFGQINDLAKSFELF 333

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVD 341
             M   G +P++  +  ++  C+ T ++ LG +     +H   ++ G E        L+D
Sbjct: 334 CQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ-----IHSLSVKTGFESDMYVSGVLID 388

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           +  + G L+KA +++ EML      S  SM    +   H+C K  L      +   + P 
Sbjct: 389 MYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGYVQ--HECCKDALAAFKEMQKCGIWPD 445

Query: 402 NVGIYVMLS 410
           N+G+   +S
Sbjct: 446 NIGLASAIS 454



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 178/390 (45%), Gaps = 32/390 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPR---NPLPFNVV 57
            +H++ F+ G+      I +  L+  Y  C      G +   L   N     N + +N++
Sbjct: 265 QLHSYLFKAGI--SSDYIMEGSLLDLYVKC------GDVETALVIFNSSDRTNVVLWNLM 316

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           +  F +      + + F  M   GI  + +     L   T  ++   G+Q+ +   K+G+
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            S ++V   LID+Y+K   +  A  + + +  K+ V   ++++GY + +     L   + 
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  D+  L++ +  CAG++A   G Q+HA +         DV + ++L+ +Y +C
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY--VSGYSGDVSIWNALVNLYARC 494

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G + +A   F    H       KD + W  ++  + ++G  +E +K++  M  +G K + 
Sbjct: 495 GRIREAFSSFEEIEH-------KDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNV 547

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMV---HDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
             FV+ +SA ++  ++K G +    ++   H ++ E G    + L+ L  + G  + A  
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVG----NALISLYGKCGSFEDAKM 603

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGK 384
             +EM +R   S     W  ++++C   G+
Sbjct: 604 EFSEMSERNEVS-----WNTIITSCSQHGR 628



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 136/277 (49%), Gaps = 25/277 (9%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++ A     G      VG+ LIDLY+K  L+  A  +F+E+  +++V   A+LSGY +  
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L    L L R M   G+    + LS++L +C        GR +HA   +      +++F+
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKH--GFCSEIFV 180

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +++I +Y +CG    A +VF    HR       D V + +++  + + G+ +  ++++E
Sbjct: 181 GNAVITLYLRCGSFRLAERVFCDMPHR-------DTVTFNTLISGHAQCGHGEHALEIFE 233

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-----DYKLEPGPEHYSCLVD 341
            M  +G  PD V   ++++AC+  G ++ G +   ++       DY +E        L+D
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIME------GSLLD 287

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           L  + G+++ A  + N   DR    ++V +W  +L A
Sbjct: 288 LYVKCGDVETALVIFNSS-DR----TNVVLWNLMLVA 319


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 134/399 (33%), Positives = 232/399 (58%), Gaps = 17/399 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQ 107
           ++ + +  +I  + +NG+   A+  F  M   G+   D + LCS L+AS  +KD    + 
Sbjct: 183 KDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARA 242

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE--LMFDEIPVKNSVCANALLSGYCEA 165
           + + V KSG+   V V +AL D+YAK   + +A   +  D+  + N V A +L+ GY E 
Sbjct: 243 IHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSL-NVVSATSLIDGYIET 301

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L +   +   G++ + FT S++++ CA  +  E G Q+HA +I+   +L +D F
Sbjct: 302 DCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIK--TSLISDSF 359

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L++MYGKCGL++ ++Q+F       E E + D+  W + + V  ++G+ +E I+ +
Sbjct: 360 VSSTLLDMYGKCGLISLSIQLFK------EIEYHTDIA-WNAAINVLAQHGHGREAIRAF 412

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + M  +G +P+ + FV++++ACSH G V  G++YF  M   + +EP  EHYSC++D+  R
Sbjct: 413 DRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGR 472

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG LD+A K I EM  + +       W +LL AC   G  ELG++AA   ++L+P N G+
Sbjct: 473 AGRLDEAEKFIGEMPVKPNAYG----WCSLLGACRMRGNKELGEIAADNMMKLEPDNTGV 528

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +V LS +YA    W+++  +R+LM++  +KK  G SW++
Sbjct: 529 HVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVD 567



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 138/299 (46%), Gaps = 29/299 (9%)

Query: 76  FMHVHGIFLDTYA---LCSSLTASTSVKDARFGKQVQAHVTKSG-WLSSVFVGSALIDLY 131
           F   H   LDT     L + L +     D R G+ + A +  SG   +S F+ + LI +Y
Sbjct: 4   FRGQHSRSLDTATSLRLAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMY 63

Query: 132 AKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191
           +    +  A  +FD +P  N V    L+SG  +  +    L     M   GL    F LS
Sbjct: 64  SHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALS 123

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQVFNL 249
           +  RA A L+A   G Q+H   +R    LG D  +F+ S+L +MY K GL+ +A +VF+ 
Sbjct: 124 SAARAAAALAARHAGAQLHCVGVR----LGFDAELFVASNLADMYSKSGLLVEACRVFDQ 179

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISACS 308
                     KD V WT+M+  Y +NG  +  +  +  M   G    D+    +V+SA  
Sbjct: 180 MPQ-------KDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSA-- 230

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRG 363
            +G +K G  +    +H   ++ G E      + L D+  +A ++D A +++   +D+G
Sbjct: 231 -SGGLKDG--WLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVK--IDQG 284



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 156/348 (44%), Gaps = 26/348 (7%)

Query: 48  PR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PR N + +  ++S   +N     AL  FS M   G+    +AL S+  A+ ++     G 
Sbjct: 80  PRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGA 139

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+     + G+ + +FV S L D+Y+K  L+ +A  +FD++P K++V   A++ GY +  
Sbjct: 140 QLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNG 199

Query: 167 LWAGGLELVRLMPALGL-DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                +   R M   GL   D   L ++L A  GL      R +H+ +++       +V 
Sbjct: 200 NLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKS--GFEQEVA 257

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           ++++L +MY K   +  A +V  +     +G +N  VV  TS++  Y      ++ + ++
Sbjct: 258 VRNALTDMYAKAADMDNAARVVKID----QGSLN--VVSATSLIDGYIETDCIEKALLMF 311

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             +   G +P+E  F ++I  C+    ++ G +    ++    L       S L+D+  +
Sbjct: 312 IELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVI-KTSLISDSFVSSTLLDMYGK 370

Query: 346 AG--------------ELDKAWK-LINEMLDRGHGSSSVSMWGALLSA 378
            G                D AW   IN +   GHG  ++  +  + S+
Sbjct: 371 CGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSS 418


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 242/443 (54%), Gaps = 19/443 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHAH  +        +   +RL++ Y  C     L    N L  +  RN + +  +IS 
Sbjct: 62  QVHAHMVKARYR--PPVYLATRLIILYVRC---GALDDARNVLDGMPERNVVSWTAMISG 116

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + ++G    AL+ F  M   G   + + L + LT+    +  +  +QV + V K+ + S 
Sbjct: 117 YSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESH 176

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +FVGS+L+D+Y K   I +A  +FD +P +++V   A++SGY +  L    L+L R + +
Sbjct: 177 MFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYS 236

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  ++ T + LL + +GL++  +G+QVH  ++RK   L   + +Q+SLI+MY KCG +
Sbjct: 237 SGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRK--ELPFFIVLQNSLIDMYSKCGKL 294

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             + +VF+    R         + W +ML  YGR+G  +EV++L+  M     KPD V  
Sbjct: 295 LYSRRVFDNMPQR-------SAISWNAMLMGYGRHGIGQEVVQLFRTM-TEEVKPDSVTL 346

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + V+S CSH G V  G++ F+ +V +        HY C++DLL R+G+L KA  LI  M 
Sbjct: 347 LAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHM- 405

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
                  + ++WG+LL AC       +G++ AQK L+++P N G YV+LSN+YA   MW 
Sbjct: 406 ---PFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWK 462

Query: 421 EIGQLRELMKEKGLKKDVGCSWI 443
           ++ ++R+LM E  + K+   SWI
Sbjct: 463 DVFRVRKLMLENTVTKEPAKSWI 485



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 163/326 (50%), Gaps = 26/326 (7%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           +++TA    +    G+QV AH+ K+ +   V++ + LI LY +   + DA  + D +P +
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPER 105

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N V   A++SGY ++   A  LEL   M   G   + FTL+ +L +C    + +   QVH
Sbjct: 106 NVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVH 165

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           + +++   N  + +F+ SSL++MYGK G + +A +VF++   R       D V  T+++ 
Sbjct: 166 SLVVK--TNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPER-------DTVSCTAIIS 216

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y + G   E + L+  +  +G + + V F T++++ S    +  G +     VH   L 
Sbjct: 217 GYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQ-----VHGLILR 271

Query: 331 PGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGK 384
                +    + L+D+  + G+L  + ++ + M  R    S++S W A+L     H  G+
Sbjct: 272 KELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQR----SAIS-WNAMLMGYGRHGIGQ 326

Query: 385 FELGKLAAQKALELDPHNVGIYVMLS 410
            E+ +L      E+ P +V +  +LS
Sbjct: 327 -EVVQLFRTMTEEVKPDSVTLLAVLS 351



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 23/183 (12%)

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
           DYD     A + AC    A   GRQVHA+M++        V++ + LI +Y +CG +  A
Sbjct: 43  DYD-----AAITACVERQALGEGRQVHAHMVK--ARYRPPVYLATRLIILYVRCGALDDA 95

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
             V       L+G   ++VV WT+M+  Y ++G   E ++L+  ML  G K +E    TV
Sbjct: 96  RNV-------LDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATV 148

Query: 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEM 359
           +++C     V   I+  E  VH   ++   E +    S L+D+  ++G + +A K+ + +
Sbjct: 149 LTSCP----VHQSIQQVE-QVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDML 203

Query: 360 LDR 362
            +R
Sbjct: 204 PER 206


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 228/402 (56%), Gaps = 14/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +  +I+   +NG    A+  +  MH   +  D   +   + A T++  ++ G
Sbjct: 166 MGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMG 225

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
             +  ++ +   +  V V ++L+D+YAK   +  A  +F  +  KN +  +AL+SG+ + 
Sbjct: 226 LSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQN 285

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L+LV  M + G   D  +L ++L AC+ +   + G+ VH Y++R+   L  D  
Sbjct: 286 GFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR---LHFDCV 342

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
             +++I+MY KCG ++ A  VF+    R       D + W +++  YG +G  +E + L+
Sbjct: 343 SSTAVIDMYSKCGSLSFARTVFDQISFR-------DSISWNAIIASYGIHGSGEEALSLF 395

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M     KPD   F +++SA SH+G V+ G  +F  MV++YK++P  +HY+C+VDLL R
Sbjct: 396 LQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSR 455

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG +++A +LI  M+        +++W ALLS C + GKF +G++AA+K LEL+P + GI
Sbjct: 456 AGRVEEAQELIESMIT----EPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGI 511

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           Y ++SN +A    WDE+ ++R++MK+ G+KK  G S +EV G
Sbjct: 512 YSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNG 553



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 178/364 (48%), Gaps = 28/364 (7%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I  + R G+   AL  +  M   G+  D+      L A T   D R G++      
Sbjct: 73  WNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAV 132

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
             G+   VFVG+A+++LYAK   + +A  +FD++  ++ VC   +++G  +       ++
Sbjct: 133 DQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVD 192

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           + R M    ++ D   +  L++AC  L  ++ G  +H YMIRK  ++  DV +Q+SL++M
Sbjct: 193 IYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRK--DIIMDVIVQTSLVDM 250

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G +  A  VF     R+   + K+V+ W++++  + +NG+    ++L   M   G 
Sbjct: 251 YAKNGHLELASCVFR----RM---LYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGY 303

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC-----LVDLLCRAGE 348
           KPD V+ V+V+ ACS  G +KLG     ++V          H+ C     ++D+  + G 
Sbjct: 304 KPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRL-------HFDCVSSTAVIDMYSKCGS 356

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCGKFELGKLAAQKALELDPHNVGIY 406
           L  A  + +++  R     S+S W A++++   H  G+  L      +   + P +    
Sbjct: 357 LSFARTVFDQISFR----DSIS-WNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFA 411

Query: 407 VMLS 410
            +LS
Sbjct: 412 SLLS 415



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 17/255 (6%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           + LI  YA+L  I  A  +FD+ P       NA++  Y         L L   M + G+ 
Sbjct: 43  AKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVR 102

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D  T + +L+AC        G +     + +    G+DVF+ ++++ +Y KCG + +A+
Sbjct: 103 PDSSTYTVVLKACTRSLDLRSGEETWRQAVDQ--GYGDDVFVGAAVLNLYAKCGKMDEAM 160

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           +VF+  G R       D+V WT+M+    +NG  +E + +Y  M     + D V  + +I
Sbjct: 161 RVFDKMGRR-------DLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLI 213

Query: 305 SACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
            AC+  G  K+G+    +M+  D  ++   +  + LVD+  + G L+ A  +   ML + 
Sbjct: 214 QACTTLGHSKMGLSIHGYMIRKDIIMDVIVQ--TSLVDMYAKNGHLELASCVFRRMLYK- 270

Query: 364 HGSSSVSMWGALLSA 378
               +V  W AL+S 
Sbjct: 271 ----NVISWSALISG 281


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 234/445 (52%), Gaps = 19/445 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHAH    G L   +I  +    L YT  +HK  +    +    L  R+   ++V++  
Sbjct: 21  QVHAHVVANGTLQDLVIANK----LLYTYAQHKA-IDDAYSLFDGLTMRDSKTWSVMVGG 75

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F + G       TF  +   G+  D Y L   +       D + G+ +   V K G LS 
Sbjct: 76  FAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSD 135

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            FV ++L+D+YAK +++ DA+ +F+ +  K+ V    ++  Y +   +   L L   M  
Sbjct: 136 HFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYES-LVLFDRMRE 194

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  D   +  ++ ACA L A    R  + Y++R   +L  DV + +++I+MY KCG V
Sbjct: 195 EGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSL--DVILGTAMIDMYAKCGSV 252

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A +VF+    R++    K+V+ W++M+  YG +G  K+ I L+  ML     P+ V F
Sbjct: 253 ESAREVFD----RMK---EKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTF 305

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V+++ ACSH G ++ G+ +F  M  ++ + P  +HY+C+VDLL RAG LD+A +LI  M 
Sbjct: 306 VSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMT 365

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
                     +W ALL AC    K EL + AA   LEL P N G YV+LSN+YAK   W+
Sbjct: 366 ----VEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWE 421

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
           ++ + R++M ++ LKK  G +WIEV
Sbjct: 422 KVAKFRDMMTQRKLKKIPGWTWIEV 446



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 147/278 (52%), Gaps = 26/278 (9%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +QV AHV  +G L  + + + L+  YA+   I DA  +FD + +++S   + ++ G+ +A
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              AG     R +   G+  D++TL  ++R C   +  + GR +H  +++    L +D F
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKH--GLLSDHF 137

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR-NGYFKEVIKL 284
           + +SL++MY KC +V  A ++F       E  ++KD+V WT M+G Y   N Y  E + L
Sbjct: 138 VCASLVDMYAKCIVVEDAQRLF-------ERMLSKDLVTWTVMIGAYADCNAY--ESLVL 188

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLV 340
           ++ M   G  PD+VA VTV++AC+     KLG  +     +DY +  G        + ++
Sbjct: 189 FDRMREEGVVPDKVAMVTVVNACA-----KLGAMHRARFANDYIVRNGFSLDVILGTAMI 243

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           D+  + G ++ A ++ + M ++     +V  W A+++A
Sbjct: 244 DMYAKCGSVESAREVFDRMKEK-----NVISWSAMIAA 276


>gi|225216963|gb|ACN85255.1| EMB2261 putative [Oryza officinalis]
          Length = 622

 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 221/396 (55%), Gaps = 20/396 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  +IS F RN     A++ F S + ++G+  D     S +TA  ++K    G+Q  A V
Sbjct: 208 YTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRGSQGRQAHAQV 267

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G   +V V S+ +D+YAK  L+ +A  +FD + V+N V   ALL GYC+   +   +
Sbjct: 268 VTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVI 327

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSL 230
            L R M     D D ++L  +LRACAGLS+ + G+++H   +R    +G   DV ++S+L
Sbjct: 328 ALFREMDKE--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLR----MGGWRDVVVESAL 381

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           +++Y KCG V  A  VF       E    ++ + W +M+G + +NG+ +  I L+  M+ 
Sbjct: 382 VDLYAKCGAVDYAYSVF-------EASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVR 434

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G +PD ++F+ V+ ACSHTG V+ G  YF  M  DY + PG EHY+C+VDLL R   L+
Sbjct: 435 EGPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLLSRVELLE 494

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +A  LIN+   R    +  S+W A+L A       ++ +  A+K +EL+P     Y++L 
Sbjct: 495 EAEDLINKSPFR----NDSSLWAAILGASATHSNPDVAERVAKKMMELEPQYHLSYILLE 550

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           N+Y     W++  ++R LM+ + +KK+ G SWI+  
Sbjct: 551 NVYRTVGRWEDALEIRRLMESRKVKKEPGMSWIDTN 586



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 167/369 (45%), Gaps = 39/369 (10%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTY 87
           R  ++L         L  R+ +  + +++ F R G P  AL +   M       +  + +
Sbjct: 81  RLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRSMLAGADDDVSPNAH 140

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           AL +++ A   ++D + G  +   V   G+     V S+L+D+Y  +    DA  +F+E+
Sbjct: 141 ALSAAVKACAVLRDRKAGACLHGSVLVRGFGDDDVVLSSLVDMYGHVAAPGDARKVFEEM 200

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFG 206
              + +C  +L+S +     +   +   R M  + G+  D  T  +++ A   L     G
Sbjct: 201 RAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRGSQG 260

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           RQ HA ++ +   L  +V ++SS ++MY KCGL+ +A +VF+    R E       V   
Sbjct: 261 RQAHAQVVTR--GLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNE-------VSRC 311

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           ++LG Y +NG +++VI L+    M+    D  +  TV+ AC+    VK G E     +H 
Sbjct: 312 ALLGGYCQNGEYEKVIALFRE--MDKEDGDWYSLGTVLRACAGLSSVKPGKE-----IHC 364

Query: 327 YKLEPGPEH----YSCLVDLLCRAGELDKAWKLI-----------NEML----DRGHGSS 367
             L  G        S LVDL  + G +D A+ +            N M+      GHG  
Sbjct: 365 RFLRMGGWRDVVVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGER 424

Query: 368 SVSMWGALL 376
           +++++  ++
Sbjct: 425 AINLFNRMV 433



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 21/204 (10%)

Query: 122 FVGSALIDLYAKLL--LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           ++ +AL+  Y +L   L H A   FD++P ++ V  +++L+ +  A +    L  +R M 
Sbjct: 70  YLANALLAFYVRLPRHLPH-ALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRSML 128

Query: 180 ALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           A G D D       LSA ++ACA L   + G  +H  ++ +    G+D  + SSL++MYG
Sbjct: 129 A-GADDDVSPNAHALSAAVKACAVLRDRKAGACLHGSVLVR--GFGDDDVVLSSLVDMYG 185

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTK 294
                  A +VF       E     D + +TS++  + RN +F+E ++ + +ML MNG +
Sbjct: 186 HVAAPGDARKVF-------EEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVR 238

Query: 295 PDEVAFVTVISACSHTGQVKLGIE 318
           PD   F ++++A    G +K G +
Sbjct: 239 PDGCTFGSMMTAL---GNLKRGSQ 259


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 148/436 (33%), Positives = 237/436 (54%), Gaps = 20/436 (4%)

Query: 13  LICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALK 72
            +C I  ++ L+  Y+ C   K  G  +     +  R+ + +  VIS + R G    A+ 
Sbjct: 65  FVCNIYVENSLVHFYSVC---KRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 73  TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
            F  M V     +     S L A         GK +     KS +   + V +AL+D+Y 
Sbjct: 122 LFLRMDVEP---NAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYV 178

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
           K   +  A+ +FDE+  K+ V   +++SG  +       LEL + M + G++ D   L++
Sbjct: 179 KCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTS 238

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L ACA L A ++GR VH ++ RK      D+ + +++++MY KCG +  ++Q+FN    
Sbjct: 239 VLSACARLGALDYGRWVHEHIDRKAIKW--DIQIGTAMVDMYAKCGCIEMSMQIFN---- 292

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
              G  +K+V+ W ++L     +G+  +V++L+E M+  G +P+EV F+ +++AC H G 
Sbjct: 293 ---GMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGL 349

Query: 313 VKLGIEYFEWMV-HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
           V  G +YF WM    Y L P  EHY C+VDLLCRA  LD+A +L   M      S  V +
Sbjct: 350 VNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAM----PMSPDVRI 405

Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
            GALLSAC + G  EL +    + +ELD H+ G+YV+LSN++A    WD++ ++R LMKE
Sbjct: 406 MGALLSACKENGNTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKE 465

Query: 432 KGLKKDVGCSWIEVTG 447
           KG+KK  G + IE+ G
Sbjct: 466 KGIKKPPGSTVIELDG 481



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 156/329 (47%), Gaps = 24/329 (7%)

Query: 53  PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           PFN ++S +     P  A   +  +   G   D +   + L +         G+QV   +
Sbjct: 1   PFNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVI 60

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
            K G++ +++V ++L+  Y+      DA  +FDE+ V++ V    ++SGY  A L+    
Sbjct: 61  IKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFD--- 117

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           E V L   + ++ +  T  ++L AC        G+ +H    +    +G +V   ++L++
Sbjct: 118 EAVGLFLRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEV--SNALMD 175

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY KCG +  A QVF+           KD+V WTS++    +    KE ++L++ M  +G
Sbjct: 176 MYVKCGCLPGAKQVFDELAE-------KDIVSWTSIISGLVQCNCPKEALELFQDMQSSG 228

Query: 293 TKPDEVAFVTVISACSHTGQVKLGI---EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
            +PD +   +V+SAC+  G +  G    E+ +     + ++ G    + +VD+  + G +
Sbjct: 229 IEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIG----TAMVDMYAKCGCI 284

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + + ++ N M  +     +V  W ALL+ 
Sbjct: 285 EMSMQIFNGMPHK-----NVLTWNALLNG 308


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 249/449 (55%), Gaps = 30/449 (6%)

Query: 2   VHAH----QFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVV 57
           +HAH     FE  L+L+  I+        Y  C    +L    +    +  ++ + + V+
Sbjct: 127 IHAHIQSSTFEDDLVLLNFILNM------YAKC---GSLEEAQDLFDKMPTKDMVSWTVL 177

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           IS + ++G    AL  F  M   G   + + L S L AS +      G+Q+ A   K G+
Sbjct: 178 ISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGY 237

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
             +V VGS+L+D+YA+   + +A+++F+ +  KN V  NAL++G+         + L   
Sbjct: 238 DMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQ 297

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV-FMQSSLIEMYGK 236
           M   G +  HFT S++L ACA   + E G+ VHA++I+     G  + ++ ++LI+MY K
Sbjct: 298 MLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSG---GQPIAYIGNTLIDMYAK 353

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
            G +  A +VF     RL   + +D+V W S++  Y ++G   E ++L+E ML    +P+
Sbjct: 354 SGSIKDAKKVFR----RL---VKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPN 406

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
           E+ F++V++ACSH+G +  G  YFE M   +K+E    H+  +VDLL RAG L++A K I
Sbjct: 407 EITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFI 465

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
            EM  +     + ++WGALL AC      +LG  AA++  ELDPH+ G +V+LSN+YA  
Sbjct: 466 EEMPIK----PTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASA 521

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
               +  ++R++MKE G+KK+  CSW+E+
Sbjct: 522 GRLSDAAKVRKMMKESGVKKEPACSWVEI 550



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 179/354 (50%), Gaps = 29/354 (8%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L   T ++  + G+ + AH+  S +   + + + ++++YAK   + +A+ +FD++P K+ 
Sbjct: 112 LNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDM 171

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V    L+SGY ++   +  L L   M  LG   + FTLS+LL+A     +   GRQ+HA+
Sbjct: 172 VSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAF 231

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLEGEINKDVVLWTSMLGV 271
            ++   ++  +V + SSL++MY +   + +A  +FN LA         K+VV W +++  
Sbjct: 232 SLKYGYDM--NVHVGSSLLDMYARWAHMREAKVIFNSLAA--------KNVVSWNALIAG 281

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           + R G  + V++L+  ML  G +P    + +V+ AC+ +G ++ G    +W VH + ++ 
Sbjct: 282 HARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQG----KW-VHAHVIKS 335

Query: 332 G--PEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKF 385
           G  P  Y  + L+D+  ++G +  A K+   ++ +      +  W +++S  A H  G  
Sbjct: 336 GGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQ-----DIVSWNSIISGYAQHGLGAE 390

Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439
            L         ++ P+ +    +L+   +   + DE     ELMK+  ++  V 
Sbjct: 391 ALQLFEQMLKAKVQPNEITFLSVLTAC-SHSGLLDEGQYYFELMKKHKIEAQVA 443


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 139/394 (35%), Positives = 215/394 (54%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +  N     A   F  M   G+ +D+  +   +   T  +    G+ +     
Sbjct: 124 YNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCV 183

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G  S V V ++ I +Y K   +     +FDE+PVK  +  NA++SGY +  L    LE
Sbjct: 184 KGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLE 243

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M + G+  D FTL ++L +CA L A + G +V   +  +      +VF+ ++ I M
Sbjct: 244 LYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLV--ESNGFVPNVFVSNASISM 301

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y +CG + KA  VF++          K +V WT+M+G YG +G  +  + L++ M+  G 
Sbjct: 302 YARCGNLAKARAVFDIMP-------VKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGI 354

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +PD   FV V+SACSH+G    G+E F  M  +YKLEPGPEHYSCLVDLL RAG LD+A 
Sbjct: 355 RPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAM 414

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           + I  M     G    ++WGALL AC      ++ +LA  K +E +P+N+G YV++SN+Y
Sbjct: 415 EFIESMPVEPDG----AVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIY 470

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +     + I ++R +M+E+  +K  G S++E  G
Sbjct: 471 SDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKG 504



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 146/310 (47%), Gaps = 14/310 (4%)

Query: 53  PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           P+NV + +         ++  +  M   G   D ++    L +  S+     G+Q+  HV
Sbjct: 20  PWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 79

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN--SVCANALLSGYCEAKLWAG 170
           TK G  +  FV +ALI +Y K  L+ DA  +F+E P  +  SVC NAL+SGY        
Sbjct: 80  TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
              + R M   G+  D  T+  L+  C        GR +H   ++    L ++V + +S 
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG--GLDSEVAVLNSF 197

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           I MY KCG V         AG RL  E+  K ++ W +++  Y +NG   +V++LYE M 
Sbjct: 198 ITMYMKCGSVE--------AGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMK 249

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
            +G  PD    V+V+S+C+H G  K+G E  + +V      P     +  + +  R G L
Sbjct: 250 SSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGK-LVESNGFVPNVFVSNASISMYARCGNL 308

Query: 350 DKAWKLINEM 359
            KA  + + M
Sbjct: 309 AKARAVFDIM 318



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 7/219 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N VIS + +NG     L+ +  M   G+  D + L S L++   +   + G +V   
Sbjct: 223 ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKL 282

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V  +G++ +VFV +A I +YA+   +  A  +FD +PVK+ V   A++  Y    +   G
Sbjct: 283 VESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIG 342

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L L   M   G+  D      +L AC+     + G ++   M R+   L       S L+
Sbjct: 343 LMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKRE-YKLEPGPEHYSCLV 401

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           ++ G+ G + +A++            +  D  +W ++LG
Sbjct: 402 DLLGRAGRLDEAMEFIE------SMPVEPDGAVWGALLG 434


>gi|225216998|gb|ACN85287.1| EMB2261 putative [Oryza australiensis]
          Length = 626

 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 221/396 (55%), Gaps = 20/396 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  +IS F RN     A++ F S + ++G+  D     S +TA  ++K    G+Q  A V
Sbjct: 212 YTSLISAFVRNDWFEEAVRWFRSMLTMNGVRPDGCTFGSMMTALGNLKRGSQGRQAHAQV 271

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G   +V V S+ +D+YAK  L+ +A  +FD + V+N V   ALL GYC+   +   +
Sbjct: 272 VTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMEVRNEVSRCALLGGYCQNGEYEKVI 331

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSL 230
            L R M     D D ++L  +LRACAGLS+ + G+++H   +R    +G   DV ++S+L
Sbjct: 332 ALFREMDKE--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLR----MGGWRDVVVESAL 385

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           +++Y KCG V  A  VF       E    ++ + W +M+  + +NG+ +  I L+  M+ 
Sbjct: 386 VDLYAKCGAVDYACSVF-------EASTVRNTITWNAMISGFAQNGHGERAINLFNRMVR 438

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G +PD ++F+ V+ ACSHTG V+ G  YF+ M  DY + PG EHY+C+VDLL R   L+
Sbjct: 439 EGPRPDYISFIGVLFACSHTGMVEQGRNYFDSMCKDYGIAPGIEHYNCMVDLLSRVELLE 498

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +A  LINE   R    +  S+W A+L A       ++ +  A+K +EL+P     Y++L 
Sbjct: 499 EAEDLINESPFR----NDSSLWAAILGASATHSNPDVAERVAKKMMELEPQYHLSYILLE 554

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           N+Y     W++  ++R LM+ + +KK+ G SWI+  
Sbjct: 555 NVYRTVGRWEDALEIRRLMESRKVKKEPGMSWIDAN 590



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 169/393 (43%), Gaps = 46/393 (11%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTY 87
           R  ++L         L  R+ +  + +++ F R G P  AL +   M       +  + +
Sbjct: 85  RLPRHLPHALRAFDDLPHRDVVAHSSILAAFLRAGMPRRALASLRAMLAGADDDVSPNAH 144

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           AL +++ A   ++D + G  +   V   G      V S+L+D+Y  +    DA   F+E+
Sbjct: 145 ALSAAVKACAVLRDRKAGACLHGSVLVRGMGDDDVVLSSLVDMYGHVAAPGDARKAFEEM 204

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFG 206
              + +C  +L+S +     +   +   R M  + G+  D  T  +++ A   L     G
Sbjct: 205 RGPDGICYTSLISAFVRNDWFEEAVRWFRSMLTMNGVRPDGCTFGSMMTALGNLKRGSQG 264

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           RQ HA ++ +   L  +V ++SS ++MY KCGL+ +A +VF+    R+E    ++ V   
Sbjct: 265 RQAHAQVVTR--GLCGNVIVESSTLDMYAKCGLMVEARKVFD----RME---VRNEVSRC 315

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-------- 318
           ++LG Y +NG +++VI L+    M+    D  +  TV+ AC+    VK G E        
Sbjct: 316 ALLGGYCQNGEYEKVIALFRE--MDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRM 373

Query: 319 ------YFEWMVHDYKLEPGPEHYSC----------------LVDLLCRAGELDKAWKLI 356
                   E  + D   + G   Y+C                ++    + G  ++A  L 
Sbjct: 374 GGWRDVVVESALVDLYAKCGAVDYACSVFEASTVRNTITWNAMISGFAQNGHGERAINLF 433

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           N M+  G     +S  G L  AC   G  E G+
Sbjct: 434 NRMVREGPRPDYISFIGVLF-ACSHTGMVEQGR 465



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 21/223 (9%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL--LIHDAELMFDEIPVKNSVCANALLS 160
           R G  + A   ++G+L+  ++ +AL+  Y +L   L H A   FD++P ++ V  +++L+
Sbjct: 55  RLGYCLHARAARAGFLADRYLANALLAFYVRLPRHLPH-ALRAFDDLPHRDVVAHSSILA 113

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
            +  A +    L  +R M A G D D       LSA ++ACA L   + G  +H  ++ +
Sbjct: 114 AFLRAGMPRRALASLRAMLA-GADDDVSPNAHALSAAVKACAVLRDRKAGACLHGSVLVR 172

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
              +G+D  + SSL++MYG       A + F       E     D + +TS++  + RN 
Sbjct: 173 --GMGDDDVVLSSLVDMYGHVAAPGDARKAF-------EEMRGPDGICYTSLISAFVRND 223

Query: 277 YFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLGIE 318
           +F+E ++ + +ML MNG +PD   F ++++A    G +K G +
Sbjct: 224 WFEEAVRWFRSMLTMNGVRPDGCTFGSMMTA---LGNLKRGSQ 263


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  237 bits (605), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 208/374 (55%), Gaps = 45/374 (12%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLY-------------------------------A 132
            GKQV  HV +SG  S+  V ++LI++Y                               A
Sbjct: 136 LGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHA 195

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
           +L  +  A  +F+ +P K  V   AL+SGY  A  ++G +E  RLM   G + D  ++ A
Sbjct: 196 RLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVA 255

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L ACA L A E GR ++AY  R    +  + ++ ++L+EMY KCG + +ALQ+FN    
Sbjct: 256 VLPACAQLGALELGRWIYAYCNRH--QMLRETYVCNALVEMYAKCGCIDQALQLFN---- 309

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTG 311
              G   KDV+ W++M+G    +G  +E ++L+  M   GT KP+ + FV ++SACSH G
Sbjct: 310 ---GMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAG 366

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            +  G++YF+ M   Y +EPG EHY C+VDLLCR+G++ +   LI++M       +   +
Sbjct: 367 LLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDM----PLPADAKI 422

Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           WG++L+AC   G  +   LAA++ + L+P +VG  VML+N+YA    W E+   R+ ++ 
Sbjct: 423 WGSVLNACRSHGDVDTAVLAAERLVALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRS 482

Query: 432 KGLKKDVGCSWIEV 445
           + ++K  GCS IEV
Sbjct: 483 RSMRKTPGCSLIEV 496



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 158/344 (45%), Gaps = 53/344 (15%)

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           A+ +SL A  S +D     +V AH  +     S ++ + ++ L      +  A  +F ++
Sbjct: 15  AVMASLRACASFRDL---LRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQV 71

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLEL-VRLMPALGLDY------DHFTLSALLRACAGL 200
              N    NA++  Y +       + + +R++      +      D FT   LL+AC GL
Sbjct: 72  REPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGL 131

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN------------ 248
            A + G+QVH +++R  C   ++  +Q+SLIEMY + G +  A +VF+            
Sbjct: 132 MALDLGKQVHGHVVRSGCE--SNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNT 189

Query: 249 -LAGHRLEGEI-----------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
            ++ H   G++           +K VV WT+++  Y   G F   ++ +  M M G +PD
Sbjct: 190 VISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPD 249

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVDLLCRAGELDKAWK 354
           +V+ V V+ AC+  G ++LG   + +      L    E Y C  LV++  + G +D+A +
Sbjct: 250 DVSIVAVLPACAQLGALELGRWIYAYCNRHQMLR---ETYVCNALVEMYAKCGCIDQALQ 306

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           L N M ++      V  W  ++      G+       AQ+A++L
Sbjct: 307 LFNGMAEK-----DVISWSTMVGGLAAHGR-------AQEAVQL 338



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 58/313 (18%), Positives = 123/313 (39%), Gaps = 31/313 (9%)

Query: 8   ETGLLLICLIIF---QSRLMLPYTTC-RHKKNLGTLTNCLKFLNP---RNPLPFNVVISD 60
             G L++   +F   Q R ++ + T       LG +       N    +  + +  ++S 
Sbjct: 165 RAGDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSG 224

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           +   G    A++ F  M + G   D  ++ + L A   +     G+ + A+  +   L  
Sbjct: 225 YTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRE 284

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            +V +AL+++YAK   I  A  +F+ +  K+ +  + ++ G          ++L   M  
Sbjct: 285 TYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMER 344

Query: 181 LG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG---- 235
            G +  +  T   LL AC+     + G      M        NDV+     +E YG    
Sbjct: 345 QGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRM--------NDVYGIEPGVEHYGCIVD 396

Query: 236 ---KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
              + G + + L + +      +  +  D  +W S+L     +G     +   E ++   
Sbjct: 397 LLCRSGQIQRTLDLIS------DMPLPADAKIWGSVLNACRSHGDVDTAVLAAERLV--A 448

Query: 293 TKPDEVAFVTVIS 305
            +P++V  + +++
Sbjct: 449 LEPEDVGNLVMLA 461


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  237 bits (605), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 132/398 (33%), Positives = 224/398 (56%), Gaps = 15/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +   G  + A+  F+ M+  G+  +   L + L ++   +   F +QV
Sbjct: 353 KDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQV 412

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                KSG+    +V ++L+D Y K  L+ DA  +F+  P ++ V   ++++ Y +  L 
Sbjct: 413 HTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLG 472

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L++   M    +  D F  S+L  ACA LSA E G+Q+H ++++  C L +DVF  +
Sbjct: 473 EEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLK--CGLLSDVFAGN 530

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           SL+ MY KCG +  A  +FN        EI+ + +V W++M+G   ++G+ ++ ++L+  
Sbjct: 531 SLVNMYAKCGSIDDASCIFN--------EISWRGIVSWSAMIGGLAQHGHGRKALQLFYQ 582

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           ML NG  P+ +  V+V+SAC+H G V     +F  M   + + P  EHY+C+VD+L R G
Sbjct: 583 MLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVG 642

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            LD+A  L+ EM  +    +S ++WGALL A       ELG+ AA+  L L+P   G ++
Sbjct: 643 RLDEAMVLVKEMPFQ----ASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHI 698

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +L+N+YA   MWD + ++R  MK   +KK+ G SWIE+
Sbjct: 699 LLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIEL 736



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 175/364 (48%), Gaps = 36/364 (9%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N VI+    +     ALK    M  + +    + L S+L A  ++   + G+Q+ + 
Sbjct: 255 VSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSA 314

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           + K       FVG  LID+Y+K  L+ DA ++FD +P K+ +  N+++SGY         
Sbjct: 315 LMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEA 374

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           + L   M   GL+++  TLS +L++ AG  A  F  QVH   I+       D ++ +SL+
Sbjct: 375 MSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKS--GYQYDGYVANSLL 432

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           + YGKC L+  A +VF +          +D+V +TSM+  Y + G  +E +K+Y  M   
Sbjct: 433 DSYGKCCLLEDAAKVFEVCP-------AEDLVAYTSMITAYSQYGLGEEALKMYLRMQDR 485

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHYS--CLVDLLCRAG 347
             KPD   F ++ +AC++    + G +     +H + L+ G   + ++   LV++  + G
Sbjct: 486 DIKPDAFIFSSLFNACANLSAYEQGKQ-----IHVHVLKCGLLSDVFAGNSLVNMYAKCG 540

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            +D A  + NE+  RG     +  W A++      G         +KAL+L       Y 
Sbjct: 541 SIDDASCIFNEISWRG-----IVSWSAMIGGLAQHGH-------GRKALQL------FYQ 582

Query: 408 MLSN 411
           ML N
Sbjct: 583 MLKN 586



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 176/375 (46%), Gaps = 45/375 (12%)

Query: 50  NPLPFNVVIS--DFCRN---GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           N   F+ V+      RN   G  ++ +   + M   GI  + ++L + L A   ++D  +
Sbjct: 147 NEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENY 206

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G +V  ++ K G+ S  F  +AL+D+YAK      A  +F EIP  + V  NA+++G   
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL 266

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            +     L+L+  M +  +    FTLS+ L+ACA +   + GRQ+H+ +++   ++  D 
Sbjct: 267 HEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMK--MDMEPDS 324

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+   LI+MY KCGL+  A  VF+L          KDV++W S++  Y   GY  E + L
Sbjct: 325 FVGVGLIDMYSKCGLLQDARMVFDLMP-------XKDVIVWNSIISGYSNCGYDIEAMSL 377

Query: 285 YEAMLMNGTKPDEVAFVTVISACS-----------HTGQVKLGIEYFEWMVHD------- 326
           +  M   G + ++    T++ + +           HT  +K G +Y  ++ +        
Sbjct: 378 FTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGK 437

Query: 327 ----------YKLEPGPE--HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
                     +++ P  +   Y+ ++    + G  ++A K+   M DR     +  ++ +
Sbjct: 438 CCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAF-IFSS 496

Query: 375 LLSACHDCGKFELGK 389
           L +AC +   +E GK
Sbjct: 497 LFNACANLSAYEQGK 511



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 131/331 (39%), Gaps = 66/331 (19%)

Query: 97  TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
           T+ KD   G  + A + +      + + + L++LY+K      A  +  +    + V  +
Sbjct: 61  TASKDVSSGMAIHARIIRL---GLLGLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWS 117

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR--------------------- 195
           AL+SGY +       L     M  LG   + FT S++L+                     
Sbjct: 118 ALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVT 177

Query: 196 -------------------ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
                              ACAGL    +G +VH Y+I+      +D F  ++L++MY K
Sbjct: 178 EMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIK--LGYDSDPFSANALLDMYAK 235

Query: 237 CGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLG---VYGRNGYFKEVIKLYEAMLMNG 292
            G    A+ VF         EI K D+V W +++    ++ +N      +KL   M    
Sbjct: 236 SGCPEAAIAVFY--------EIPKPDIVSWNAVIAGCVLHEKNDL---ALKLLGKMGSYR 284

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
             P      + + AC+  G VKLG +    ++    +EP       L+D+  + G L  A
Sbjct: 285 VAPSMFTLSSALKACAAIGLVKLGRQLHSALM-KMDMEPDSFVGVGLIDMYSKCGLLQDA 343

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
             + + M  +      V +W +++S   +CG
Sbjct: 344 RMVFDLMPXK-----DVIVWNSIISGYSNCG 369


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  237 bits (605), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 231/397 (58%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I  + RN     AL  F  M   G     + + S L+A     DA   K++
Sbjct: 125 RSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL 184

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K+    +++VG+AL+DLYAK  +I DA  +F+ +  K+SV  +++++GY + K +
Sbjct: 185 HCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNY 244

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L R    + L+ + FTLS+++ AC+ L+A   G+Q+HA + +     G++VF+ S
Sbjct: 245 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS--GFGSNVFVAS 302

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           S ++MY KCG + ++  +F+           K++ LW +++  + ++   KEV+ L+E M
Sbjct: 303 SAVDMYAKCGSLRESYIIFSEVQE-------KNLELWNTIISGFAKHARPKEVMILFEKM 355

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G  P+EV F +++S C HTG V+ G  +F+ M   Y L P   HYSC+VD+L RAG 
Sbjct: 356 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGL 415

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A++LI  +        + S+WG+LL++C      EL ++AA+K  EL+P N G +V+
Sbjct: 416 LSEAYELIKSI----PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVL 471

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W+EI + R+L+++  +KK  G SWI++
Sbjct: 472 LSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDI 508



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 127/255 (49%), Gaps = 19/255 (7%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           + LI+ Y+K   +  A  +FD +  ++ V  N ++  Y   ++ +  L++   M   G  
Sbjct: 100 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 159

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
           +  FT+S++L AC     A   +++H   ++ C +L  ++++ ++L+++Y KCG++  A+
Sbjct: 160 FSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDL--NLYVGTALLDLYAKCGMIKDAV 217

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           QVF       E   +K  V W+SM+  Y +N  ++E + LY        + ++    +VI
Sbjct: 218 QVF-------ESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVI 270

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDR 362
            ACS+   +  G +    +    K   G   +  S  VD+  + G L +++ + +E+ ++
Sbjct: 271 CACSNLAALIEGKQMHAVIC---KSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEK 327

Query: 363 GHGSSSVSMWGALLS 377
                ++ +W  ++S
Sbjct: 328 -----NLELWNTIIS 337



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 102/202 (50%), Gaps = 1/202 (0%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + ++ +++ + +N +   AL  +       +  + + L S + A +++     G
Sbjct: 223 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ A + KSG+ S+VFV S+ +D+YAK   + ++ ++F E+  KN    N ++SG+ + 
Sbjct: 283 KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 342

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L   M   G+  +  T S+LL  C      E GR+    M R    L  +V 
Sbjct: 343 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLM-RTTYGLSPNVV 401

Query: 226 MQSSLIEMYGKCGLVTKALQVF 247
             S ++++ G+ GL+++A ++ 
Sbjct: 402 HYSCMVDILGRAGLLSEAYELI 423



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 37/217 (17%)

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L+ CA   A    +  H  +IR   +L  DV + + LI  Y KCG V  A QVF     
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIR--IDLEGDVTLLNVLINAYSKCGFVELARQVF----- 119

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS---- 308
             +G + + +V W +M+G+Y RN    E + ++  M   G K  E    +V+SAC     
Sbjct: 120 --DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCD 177

Query: 309 -------HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
                  H   VK  I        D  L  G    + L+DL  + G +  A ++   M D
Sbjct: 178 ALECKKLHCLSVKTCI--------DLNLYVG----TALLDLYAKCGMIKDAVQVFESMQD 225

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +    SSV+ W ++++       +E   L  ++A  +
Sbjct: 226 K----SSVT-WSSMVAGYVQNKNYEEALLLYRRAQRM 257


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  237 bits (605), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 135/397 (34%), Positives = 225/397 (56%), Gaps = 13/397 (3%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           + + +N +I    R G    AL  F  M    + +D Y L S L +  S+K  +    V 
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
             + K+G+ +   V +ALID+YAK   +  A ++F ++  K+ V   +L++GY     + 
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             ++L   M   G+  D   ++++L ACA L+  +FG+Q+HA +++    L + + + +S
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS--GLESSLSVDNS 182

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L+ MY KCG +  A + F+    R       DV+ WT+++  Y +NG  K  ++ Y+ M+
Sbjct: 183 LVTMYAKCGSIVDANRAFDNMPTR-------DVISWTALIVGYAQNGRGKHSLQFYDQMI 235

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
             GTKPD + F+ ++ ACSH G +  G  YFE M   Y ++PGPEHY+C++DLL R+G+L
Sbjct: 236 ATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKL 295

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            +A  L+N+M+     +    +W ALL+AC    + ELG++AA+   EL+P N   YVML
Sbjct: 296 AEAKGLLNQMV----VAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVML 351

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           SN+Y+    W++  ++R LM+ +G+ K+ G SWIE  
Sbjct: 352 SNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETN 388


>gi|225216941|gb|ACN85235.1| EMB2261 putative [Oryza minuta]
          Length = 612

 Score =  237 bits (605), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 222/396 (56%), Gaps = 20/396 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  +IS F RN     A++ F S + ++G+  D     S +TA  ++K    G+Q  A V
Sbjct: 209 YTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRVSQGRQAHAQV 268

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G   +V V S+ +D+YAK  L+ +A  +FD + V+N V   ALL GYC+   +   +
Sbjct: 269 VGRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSQCALLGGYCQNGEYEKVI 328

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSL 230
            L R M  +  D D ++L  +LRACAGLS+ + G+++H   +R    +G   DV ++S+L
Sbjct: 329 TLFREMDKV--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLR----MGGWRDVVVESAL 382

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           +++Y KCG V  A  VF       E    ++ + W +M+G + +NG+ ++ I L++ M+ 
Sbjct: 383 VDLYAKCGAVDYAYSVF-------EASTVRNTITWNAMIGGFTQNGHGEQAINLFKRMVR 435

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G +PD ++F+ V+ ACSHTG V+ G  YF  M  DY + PG EHY+C+VDLL R   L+
Sbjct: 436 EGPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCEDYSIAPGIEHYNCMVDLLSRVELLE 495

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +A  LIN+   R    +  S+W A+L A       ++ +  A+K +EL+P     Y++L 
Sbjct: 496 EAEDLINKSPFR----NDSSLWAAILGASATHSNPDVAERVAKKMMELEPQYHLSYILLE 551

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           N+Y     W    ++R LM+ + +KK+ G SWI+  
Sbjct: 552 NVYRTIGRWGYALEIRRLMESRKVKKEPGMSWIDAN 587



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 165/369 (44%), Gaps = 39/369 (10%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTY 87
           R  ++L         L  R+ +  + +++ F R G P  AL +   M       +  + +
Sbjct: 82  RLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRAMLTGADDDVSPNAH 141

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           AL +++ A   ++D + G  +   V   G+     V S+L+D+Y  +    DA  +F+E+
Sbjct: 142 ALSAAVKACAVLRDHKAGACLHGSVLVRGFGDDDVVLSSLVDMYGHVAAPGDARKVFEEM 201

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFG 206
              + +C  +L+S +     +   +   R M  + G+  D  T  +++ A   L     G
Sbjct: 202 RAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRVSQG 261

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           RQ HA ++ +   L  +V ++SS ++MY KCGL+ +A +VF+    R E       V   
Sbjct: 262 RQAHAQVVGR--GLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNE-------VSQC 312

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           ++LG Y +NG +++VI L+    M+    D  +  TV+ AC+    VK G E     +H 
Sbjct: 313 ALLGGYCQNGEYEKVITLFRE--MDKVDGDWYSLGTVLRACAGLSSVKPGKE-----IHC 365

Query: 327 YKLEPGPEH----YSCLVDLLCRAGELDKAWK---------------LINEMLDRGHGSS 367
             L  G        S LVDL  + G +D A+                +I      GHG  
Sbjct: 366 RFLRMGGWRDVVVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFTQNGHGEQ 425

Query: 368 SVSMWGALL 376
           +++++  ++
Sbjct: 426 AINLFKRMV 434



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 103/201 (51%), Gaps = 16/201 (7%)

Query: 122 FVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           ++ +AL+  Y +L   +  A   FD++P ++ V  +++L+ +  A +    L  +R M  
Sbjct: 71  YLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRAM-L 129

Query: 181 LGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            G D D       LSA ++ACA L   + G  +H  ++ +    G+D  + SSL++MYG 
Sbjct: 130 TGADDDVSPNAHALSAAVKACAVLRDHKAGACLHGSVLVR--GFGDDDVVLSSLVDMYGH 187

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKP 295
                 A +VF       E     D + +TS++  + RN +F+E ++ + +ML MNG +P
Sbjct: 188 VAAPGDARKVF-------EEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRP 240

Query: 296 DEVAFVTVISACSHTGQVKLG 316
           D   F ++++A  +  +V  G
Sbjct: 241 DGCTFGSMMTALGNLKRVSQG 261


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  237 bits (605), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 217/393 (55%), Gaps = 12/393 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I    ++  P  +L     M + G+  D++ +CS L+A + +K  R GK+V   + 
Sbjct: 464 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           ++     +FV  +++ LY     +   + +FD +  K+ V  N +++GY +       L 
Sbjct: 524 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 583

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           + R M   G+     ++  +  AC+ L +   GR+ HAY ++    L +D F+  SLI+M
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHL--LEDDAFIACSLIDM 641

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G +T++ +VFN       G   K    W +M+  YG +G  KE IKL+E M   G 
Sbjct: 642 YAKNGSITQSSKVFN-------GLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGH 694

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            PD++ F+ V++AC+H+G +  G+ Y + M   + L+P  +HY+C++D+L RAG+LDKA 
Sbjct: 695 NPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKAL 754

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           +++ E +      + V +W +LLS+C      E+G+  A K  EL+P     YV+LSNLY
Sbjct: 755 RVVAEEMSE---EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLY 811

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           A    W+++ ++R+ M E  L+KD GCSWIE+ 
Sbjct: 812 AGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELN 844



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 156/331 (47%), Gaps = 27/331 (8%)

Query: 58  ISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSS-----LTASTSVKDARFGKQVQAH 111
           IS+FC  G    + +T   F+       D + L        L AS   KD   G+++   
Sbjct: 50  ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 109

Query: 112 VTKSGWLSSVFV-GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
           V+ S  L +  V  + +I +YA      D+  +FD +  KN    NA++S Y   +L+  
Sbjct: 110 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 169

Query: 171 GLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
            LE  + ++    L  DHFT   +++ACAG+S    G  VH  +++    L  DVF+ ++
Sbjct: 170 VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVK--TGLVEDVFVGNA 227

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE-VIKLYEAM 288
           L+  YG  G VT ALQ+F++   R       ++V W SM+ V+  NG+ +E  + L E M
Sbjct: 228 LVSFYGTHGFVTDALQLFDIMPER-------NLVSWNSMIRVFSDNGFSEESFLLLGEMM 280

Query: 289 LMNGT---KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             NG     PD    VTV+  C+   ++ LG     W V   +L+      + L+D+  +
Sbjct: 281 EENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVK-LRLDKELVLNNALMDMYSK 339

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            G +  A     +M+ + + + +V  W  ++
Sbjct: 340 CGCITNA-----QMIFKMNNNKNVVSWNTMV 365



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 21/297 (7%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHV 79
           +R++  Y  C    +   + + L+    +N   +N VIS + RN      L+TF   +  
Sbjct: 124 TRIITMYAMCGSPDDSRFVFDALR---SKNLFQWNAVISSYSRNELYDEVLETFIEMIST 180

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
             +  D +     + A   + D   G  V   V K+G +  VFVG+AL+  Y     + D
Sbjct: 181 TDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTD 240

Query: 140 AELMFDEIPVKNSVCANALL-----SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
           A  +FD +P +N V  N+++     +G+ E      G E++          D  TL  +L
Sbjct: 241 ALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLG-EMMEENGDGAFMPDVATLVTVL 299

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
             CA       G+ VH + ++    L  ++ + ++L++MY KCG +T A  +F +     
Sbjct: 300 PVCAREREIGLGKGVHGWAVK--LRLDKELVLNNALMDMYSKCGCITNAQMIFKMNN--- 354

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKPDEVAFVTVISACSH 309
               NK+VV W +M+G +   G       +   ML  G   K DEV  +  +  C H
Sbjct: 355 ----NKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 407



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 161/357 (45%), Gaps = 25/357 (7%)

Query: 37  GTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFM------HVHGIFL-DT 86
           G +T+ L+  +    RN + +N +I  F  NG   ++ ++F  +      +  G F+ D 
Sbjct: 236 GFVTDALQLFDIMPERNLVSWNSMIRVFSDNG---FSEESFLLLGEMMEENGDGAFMPDV 292

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
             L + L      ++   GK V     K      + + +AL+D+Y+K   I +A+++F  
Sbjct: 293 ATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKM 352

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAE 204
              KN V  N ++ G+       G  +++R M A G D   D  T+   +  C   S   
Sbjct: 353 NNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLP 412

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
             +++H Y +++      +  + ++ +  Y KCG ++ A +VF+       G  +K V  
Sbjct: 413 SLKELHCYSLKQ--EFVYNELVANAFVASYAKCGSLSYAQRVFH-------GIRSKTVNS 463

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +++G + ++   +  +  +  M ++G  PD     +++SACS    ++LG E   +++
Sbjct: 464 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            ++ LE     Y  ++ L    GEL     L + M D+   S +  + G L +   D
Sbjct: 524 RNW-LERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPD 579



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 6/238 (2%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           H   L T+      +  ++ + +N VI+ + +NG P  AL  F  M ++GI L   ++  
Sbjct: 543 HCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP 602

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
              A + +   R G++  A+  K       F+  +LID+YAK   I  +  +F+ +  K+
Sbjct: 603 VFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKS 662

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           +   NA++ GY    L    ++L   M   G + D  T   +L AC        G +   
Sbjct: 663 TASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD 722

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
            M +    L  ++   + +I+M G+ G + KAL+V       +  E   DV +W S+L
Sbjct: 723 QM-KSSFGLKPNLKHYACVIDMLGRAGQLDKALRV---VAEEMSEE--ADVGIWKSLL 774


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  237 bits (605), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 217/393 (55%), Gaps = 12/393 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I    ++  P  +L     M + G+  D++ +CS L+A + +K  R GK+V   + 
Sbjct: 214 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 273

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           ++     +FV  +++ LY     +   + +FD +  K+ V  N +++GY +       L 
Sbjct: 274 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 333

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           + R M   G+     ++  +  AC+ L +   GR+ HAY ++    L +D F+  SLI+M
Sbjct: 334 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHL--LEDDAFIACSLIDM 391

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G +T++ +VFN       G   K    W +M+  YG +G  KE IKL+E M   G 
Sbjct: 392 YAKNGSITQSSKVFN-------GLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGH 444

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            PD++ F+ V++AC+H+G +  G+ Y + M   + L+P  +HY+C++D+L RAG+LDKA 
Sbjct: 445 NPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKAL 504

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           +++ E +      + V +W +LLS+C      E+G+  A K  EL+P     YV+LSNLY
Sbjct: 505 RVVAEEMSE---EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLY 561

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           A    W+++ ++R+ M E  L+KD GCSWIE+ 
Sbjct: 562 AGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELN 594



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 154/342 (45%), Gaps = 22/342 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM------HVHGIFL-DTYALCSSLTASTSVKD 101
           RN + +N +I  F  NG   ++ ++F  +      +  G F+ D   L + L      ++
Sbjct: 1   RNFVSWNSMIRVFSDNG---FSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARERE 57

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
              GK V     K      + + +AL+D+Y+K   I +A+++F     KN V  N ++ G
Sbjct: 58  IGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGG 117

Query: 162 YCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           +       G  +++R M A G D   D  T+   +  C   S     +++H Y +++   
Sbjct: 118 FSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQ--E 175

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
              +  + ++ +  Y KCG ++ A +VF+       G  +K V  W +++G + ++   +
Sbjct: 176 FVYNELVANAFVASYAKCGSLSYAQRVFH-------GIRSKTVNSWNALIGGHAQSNDPR 228

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
             +  +  M ++G  PD     +++SACS    ++LG E   +++ ++ LE     Y  +
Sbjct: 229 LSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW-LERDLFVYLSV 287

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
           + L    GEL     L + M D+   S +  + G L +   D
Sbjct: 288 LSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPD 329



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 6/238 (2%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           H   L T+      +  ++ + +N VI+ + +NG P  AL  F  M ++GI L   ++  
Sbjct: 293 HCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP 352

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
              A + +   R G++  A+  K       F+  +LID+YAK   I  +  +F+ +  K+
Sbjct: 353 VFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKS 412

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           +   NA++ GY    L    ++L   M   G + D  T   +L AC        G +   
Sbjct: 413 TASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD 472

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
            M +    L  ++   + +I+M G+ G + KAL+V       +  E   DV +W S+L
Sbjct: 473 QM-KSSFGLKPNLKHYACVIDMLGRAGQLDKALRV---VAEEMSEE--ADVGIWKSLL 524


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 238/444 (53%), Gaps = 18/444 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H+   + G +    I  Q+ L+  Y  C   K+   L N +     ++ + +  +I   
Sbjct: 468 IHSRVVKDGFMFD--ISVQNALISMYARCGSIKDARLLFNKMV---RKDIISWTAMIGGL 522

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            ++G    AL  F  M   G+  +     S L A +S     +G+++   V ++G  +  
Sbjct: 523 AKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDA 582

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            V + L+++Y+    + DA  +FD +  ++ V  NA++ GY    L    L+L   +   
Sbjct: 583 HVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 642

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           GL  D  T   +L ACA   + E+ +++H+ +++      +D  + ++L+  Y KCG  +
Sbjct: 643 GLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKD--GYLSDTSLGNALVSTYAKCGSFS 700

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            AL VF+         + ++V+ W +++G   ++G  ++V++L+E M M G KPD V FV
Sbjct: 701 DALLVFDKM-------MKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFV 753

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           +++SACSH G ++ G  YF  M  D+ + P  EHY C+VDLL RAG+LD+   LI  M  
Sbjct: 754 SLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPF 813

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +    ++  +WGALL AC   G   + + AA+ +L+LDP N  +YV LS++YA   MWD 
Sbjct: 814 Q----ANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDS 869

Query: 422 IGQLRELMKEKGLKKDVGCSWIEV 445
             +LR+LM+++G+ K+ G SWIEV
Sbjct: 870 AAKLRKLMEQRGVTKEPGRSWIEV 893



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 170/367 (46%), Gaps = 17/367 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + + ++I  +   G    A + F  M   G+  +     + L A +     ++G
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWG 364

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V +H+  +G  S + VG+AL+ +YAK     D   +F+++  ++ +  N ++ G  E 
Sbjct: 365 KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 424

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             W    E+   M   G+  +  T   LL AC   +A  +GR++H+ +++       D+ 
Sbjct: 425 GNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKD--GFMFDIS 482

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q++LI MY +CG +  A  +FN         + KD++ WT+M+G   ++G   E + ++
Sbjct: 483 VQNALISMYARCGSIKDARLLFNKM-------VRKDIISWTAMIGGLAKSGLGAEALAVF 535

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + M   G KP+ V + ++++ACS    +  G    + ++ +  L       + LV++   
Sbjct: 536 QDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI-EAGLATDAHVANTLVNMYSM 594

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNV 403
            G +  A ++ + M  R      +  + A++   A H+ GK  L      +   L P  V
Sbjct: 595 CGSVKDARQVFDRMTQR-----DIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV 649

Query: 404 GIYVMLS 410
               ML+
Sbjct: 650 TYINMLN 656



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 180/394 (45%), Gaps = 24/394 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R    +N ++  + + G    ALK    M  HG+ L        L++  S      G+++
Sbjct: 207 RTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREI 266

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K+  L  V V + ++++YAK   IH+A  +FD++  K+ V    ++ GY +    
Sbjct: 267 HVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHS 326

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFM 226
               E+ + M   G+  +  T   +L A +G +A ++G+ VH++++    N G  +D+ +
Sbjct: 327 EIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHIL----NAGHESDLAV 382

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L++MY KCG      QVF       E  +N+D++ W +M+G     G ++E  ++Y 
Sbjct: 383 GTALVKMYAKCGSYKDCRQVF-------EKLVNRDLIAWNTMIGGLAEGGNWEEASEIYH 435

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD-YKLEPGPEHYSCLVDLLCR 345
            M   G  P+++ +V +++AC +   +  G E    +V D +  +   +  + L+ +  R
Sbjct: 436 QMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ--NALISMYAR 493

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNV 403
            G +  A  L N+M+ +      +  W A++   A    G   L      +   L P+ V
Sbjct: 494 CGSIKDARLLFNKMVRK-----DIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRV 548

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
             Y  + N  +     D   ++ + + E GL  D
Sbjct: 549 -TYTSILNACSSPAALDWGRRIHQQVIEAGLATD 581



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 163/356 (45%), Gaps = 29/356 (8%)

Query: 40  TNCLKFLNPR---NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAS 96
           +N +++ N R   N L  +    +    G    A+    ++   G  +++      L   
Sbjct: 93  SNGIRYFNGRSKANKLHSHTYKDERTITGKD-RAMDVVQYLQQQGARVNSCDYMKMLKRC 151

Query: 97  TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVCA 155
             VKD   G++V  H+ +   +   +  +ALI++Y +   I +A  +++++   + +V +
Sbjct: 152 IEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHS 211

Query: 156 -NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            NA++ GY +       L+L+R M   GL     T   LL +C   SA E GR++H   +
Sbjct: 212 WNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAM 271

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           +    L  DV + + ++ MY KCG + +A +VF+    ++E    K VV WT ++G Y  
Sbjct: 272 K--ARLLFDVNVANCILNMYAKCGSIHEAREVFD----KME---TKSVVSWTIIIGGYAD 322

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
            G+ +   ++++ M   G  P+ + ++ V++A S    +K G       VH + L  G E
Sbjct: 323 CGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGK-----TVHSHILNAGHE 377

Query: 335 HY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
                 + LV +  + G      ++  ++++R      +  W  ++    + G +E
Sbjct: 378 SDLAVGTALVKMYAKCGSYKDCRQVFEKLVNR-----DLIAWNTMIGGLAEGGNWE 428



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 103/219 (47%), Gaps = 15/219 (6%)

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            +++V+ +   G   +      +L+ C  +     GR+VH ++I+ C  L  D +  ++L
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVL--DQYTVNAL 182

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           I MY +CG + +A QV+N   H       + V  W +M+  Y + GY +E +KL   M  
Sbjct: 183 INMYIQCGSIEEARQVWNKLNH-----TERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ 237

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
           +G        + ++S+C     ++ G E + E M    +L       +C++++  + G +
Sbjct: 238 HGLALGRATTMRLLSSCKSPSALECGREIHVEAM--KARLLFDVNVANCILNMYAKCGSI 295

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
            +A ++ ++M      + SV  W  ++    DCG  E+ 
Sbjct: 296 HEAREVFDKM-----ETKSVVSWTIIIGGYADCGHSEIA 329


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 218/398 (54%), Gaps = 17/398 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I++F RN     A++    M   G   +     + L A   +     GK++
Sbjct: 406 RNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEI 465

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + + G    +FV +AL D+Y+K   ++ A+ +F+ I V++ V  N L+ GY      
Sbjct: 466 HARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDS 524

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M  LG+  D  +   ++ ACA L+    G+++H  ++RK       +F+ +
Sbjct: 525 LESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKL--FHTHLFVAN 582

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL+++Y +CG +  A +VF           NKDV  W +M+  YG  G     I L+EAM
Sbjct: 583 SLLDLYTRCGRIDLATKVFYCIQ-------NKDVASWNTMILGYGMRGELDTAINLFEAM 635

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G + D V+FV V+SACSH G ++ G +YF+ M  D  +EP   HY+C+VDLL RAG 
Sbjct: 636 KEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMC-DLNIEPTHTHYACMVDLLGRAGL 694

Query: 349 LDKAWKLINEMLDRGHGS-SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           +++A  LI     RG       ++WGALL AC   G  ELG  AA+   EL P + G Y+
Sbjct: 695 MEEAADLI-----RGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYI 749

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YA+   WDE  ++RELMK +G KK+ GCSW++V
Sbjct: 750 LLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQV 787



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 178/374 (47%), Gaps = 41/374 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN + +N +I+ F   G  + AL  F  M   G+  ++  + S L     +   + G
Sbjct: 302 IDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLG 361

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            +V     K    S VF+ ++LID+YAK      A  +F+++ V+N V  NA+++ +   
Sbjct: 362 MEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARN 421

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +L    +ELVR M A G   ++ T + +L ACA L     G+++HA +IR   +L  D+F
Sbjct: 422 RLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSL--DLF 479

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L +MY KCG +  A  VFN++         +D V +  ++  Y R     E ++L+
Sbjct: 480 VSNALTDMYSKCGCLNLAQNVFNIS--------VRDEVSYNILIIGYSRTNDSLESLRLF 531

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY------------------ 327
             M + G +PD V+F+ V+SAC++   ++ G E    +V                     
Sbjct: 532 SEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRC 591

Query: 328 -KLEPGPEHYSCLVDLLCRA-----------GELDKAWKLINEMLDRGHGSSSVSMWGAL 375
            +++   + + C+ +    +           GELD A  L   M + G    SVS + A+
Sbjct: 592 GRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVS-FVAV 650

Query: 376 LSACHDCGKFELGK 389
           LSAC   G  E G+
Sbjct: 651 LSACSHGGLIEKGR 664



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 136/290 (46%), Gaps = 15/290 (5%)

Query: 35  NLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVH--GIFLDTYAL 89
           N G   + +K  +    R+ + +N VI     +G    AL  F  M     GI  D   +
Sbjct: 184 NCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTV 243

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSS-VFVGSALIDLYAKLLLIHDAELMFDEIP 148
            S L      +D    + V  +  K G L   V VG+AL+D+Y K      ++ +FDEI 
Sbjct: 244 VSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEID 303

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
            +N +  NA+++ +     +   L++ RLM   G+  +  T+S++L     L   + G +
Sbjct: 304 ERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGME 363

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           VH + ++    + +DVF+ +SLI+MY K G    A  +FN  G R       ++V W +M
Sbjct: 364 VHGFSLKMA--IESDVFISNSLIDMYAKSGSSRIASTIFNKMGVR-------NIVSWNAM 414

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
           +  + RN    E ++L   M   G  P+ V F  V+ AC+  G + +G E
Sbjct: 415 IANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKE 464



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 143/312 (45%), Gaps = 26/312 (8%)

Query: 73  TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
           T++ M   G+  D       L   +   + R G++V     K G+   VFVG+ L+  Y 
Sbjct: 124 TYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYG 183

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK-LWAGGLELVRLMPAL--GLDYDHFT 189
              L  DA  +FDE+P ++ V  N ++ G C     +   L   R+M A   G+  D  T
Sbjct: 184 NCGLFGDAMKVFDEMPERDKVSWNTVI-GLCSLHGFYEEALGFFRVMVAAKPGIQPDLVT 242

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           + ++L  CA        R VH Y + K   LG  V + ++L+++YGKCG    + +VF+ 
Sbjct: 243 VVSVLPVCAETEDKVMARIVHCYAL-KVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDE 301

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
              R       +V+ W +++  +   G + + + ++  M+  G +P+ V   +++     
Sbjct: 302 IDER-------NVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGE 354

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
            G  KLG+E     VH + L+   E      + L+D+  ++G    A  + N+M     G
Sbjct: 355 LGLFKLGME-----VHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKM-----G 404

Query: 366 SSSVSMWGALLS 377
             ++  W A+++
Sbjct: 405 VRNIVSWNAMIA 416



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 147/321 (45%), Gaps = 36/321 (11%)

Query: 106 KQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGY 162
           KQV A+    G+L  SV + ++LI  YA      ++ L+F       +++   N L+   
Sbjct: 54  KQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRAN 113

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
             A ++  G      M   G+  D  T   +L+ C+       GR+VH    +       
Sbjct: 114 SIAGVF-DGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFK--LGFDG 170

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DVF+ ++L+  YG CGL   A++VF+    R       D V W +++G+   +G+++E +
Sbjct: 171 DVFVGNTLLAFYGNCGLFGDAMKVFDEMPER-------DKVSWNTVIGLCSLHGFYEEAL 223

Query: 283 KLYEAMLM--NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-----PEH 335
             +  M+    G +PD V  V+V+  C+ T       +    +VH Y L+ G      + 
Sbjct: 224 GFFRVMVAAKPGIQPDLVTVVSVLPVCAETED-----KVMARIVHCYALKVGLLGGHVKV 278

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF----ELGKLA 391
            + LVD+  + G    + K+ +E+ +R     +V  W A++++    GK+    ++ +L 
Sbjct: 279 GNALVDVYGKCGSEKASKKVFDEIDER-----NVISWNAIITSFSFRGKYMDALDVFRLM 333

Query: 392 AQKALELDPHNVGIYVMLSNL 412
             + +   P++V I  ML  L
Sbjct: 334 IDEGMR--PNSVTISSMLPVL 352


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 217/393 (55%), Gaps = 12/393 (3%)

Query: 54   FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
            +N +I    ++  P  +L     M + G+  D++ +CS L+A + +K  R GK+V   + 
Sbjct: 819  WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 878

Query: 114  KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            ++     +FV  +++ LY     +   + +FD +  K+ V  N +++GY +       L 
Sbjct: 879  RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 938

Query: 174  LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
            + R M   G+     ++  +  AC+ L +   GR+ HAY ++    L +D F+  SLI+M
Sbjct: 939  VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHL--LEDDAFIACSLIDM 996

Query: 234  YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
            Y K G +T++ +VFN       G   K    W +M+  YG +G  KE IKL+E M   G 
Sbjct: 997  YAKNGSITQSSKVFN-------GLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGH 1049

Query: 294  KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
             PD++ F+ V++AC+H+G +  G+ Y + M   + L+P  +HY+C++D+L RAG+LDKA 
Sbjct: 1050 NPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKAL 1109

Query: 354  KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
            +++ E +      + V +W +LLS+C      E+G+  A K  EL+P     YV+LSNLY
Sbjct: 1110 RVVAEEMSE---EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLY 1166

Query: 414  AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
            A    W+++ ++R+ M E  L+KD GCSWIE+ 
Sbjct: 1167 AGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELN 1199



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 156/331 (47%), Gaps = 27/331 (8%)

Query: 58  ISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSS-----LTASTSVKDARFGKQVQAH 111
           IS+FC  G    + +T   F+       D + L        L AS   KD   G+++   
Sbjct: 405 ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 464

Query: 112 VTKSGWLSSVFV-GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
           V+ S  L +  V  + +I +YA      D+  +FD +  KN    NA++S Y   +L+  
Sbjct: 465 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 524

Query: 171 GLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
            LE  + ++    L  DHFT   +++ACAG+S    G  VH  +++    L  DVF+ ++
Sbjct: 525 VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVK--TGLVEDVFVGNA 582

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE-VIKLYEAM 288
           L+  YG  G VT ALQ+F++   R       ++V W SM+ V+  NG+ +E  + L E M
Sbjct: 583 LVSFYGTHGFVTDALQLFDIMPER-------NLVSWNSMIRVFSDNGFSEESFLLLGEMM 635

Query: 289 LMNGTK---PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             NG     PD    VTV+  C+   ++ LG     W V   +L+      + L+D+  +
Sbjct: 636 EENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVK-LRLDKELVLNNALMDMYSK 694

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            G +  A     +M+ + + + +V  W  ++
Sbjct: 695 CGCITNA-----QMIFKMNNNKNVVSWNTMV 720



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 21/297 (7%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHV 79
           +R++  Y  C    +   + + L+    +N   +N VIS + RN      L+TF   +  
Sbjct: 479 TRIITMYAMCGSPDDSRFVFDALR---SKNLFQWNAVISSYSRNELYDEVLETFIEMIST 535

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
             +  D +     + A   + D   G  V   V K+G +  VFVG+AL+  Y     + D
Sbjct: 536 TDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTD 595

Query: 140 AELMFDEIPVKNSVCANALL-----SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
           A  +FD +P +N V  N+++     +G+ E      G E++          D  TL  +L
Sbjct: 596 ALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLG-EMMEENGDGAFMPDVATLVTVL 654

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
             CA       G+ VH + ++    L  ++ + ++L++MY KCG +T A  +F +     
Sbjct: 655 PVCAREREIGLGKGVHGWAVK--LRLDKELVLNNALMDMYSKCGCITNAQMIFKMNN--- 709

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKPDEVAFVTVISACSH 309
               NK+VV W +M+G +   G       +   ML  G   K DEV  +  +  C H
Sbjct: 710 ----NKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 762



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 161/357 (45%), Gaps = 25/357 (7%)

Query: 37  GTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFM------HVHGIFL-DT 86
           G +T+ L+  +    RN + +N +I  F  NG   ++ ++F  +      +  G F+ D 
Sbjct: 591 GFVTDALQLFDIMPERNLVSWNSMIRVFSDNG---FSEESFLLLGEMMEENGDGAFMPDV 647

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
             L + L      ++   GK V     K      + + +AL+D+Y+K   I +A+++F  
Sbjct: 648 ATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKM 707

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAE 204
              KN V  N ++ G+       G  +++R M A G D   D  T+   +  C   S   
Sbjct: 708 NNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLP 767

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
             +++H Y +++      +  + ++ +  Y KCG ++ A +VF+       G  +K V  
Sbjct: 768 SLKELHCYSLKQ--EFVYNELVANAFVASYAKCGSLSYAQRVFH-------GIRSKTVNS 818

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +++G + ++   +  +  +  M ++G  PD     +++SACS    ++LG E   +++
Sbjct: 819 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 878

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            ++ LE     Y  ++ L    GEL     L + M D+   S +  + G L +   D
Sbjct: 879 RNW-LERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPD 934



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 6/238 (2%)

Query: 32   HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
            H   L T+      +  ++ + +N VI+ + +NG P  AL  F  M ++GI L   ++  
Sbjct: 898  HCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP 957

Query: 92   SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
               A + +   R G++  A+  K       F+  +LID+YAK   I  +  +F+ +  K+
Sbjct: 958  VFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKS 1017

Query: 152  SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            +   NA++ GY    L    ++L   M   G + D  T   +L AC        G +   
Sbjct: 1018 TASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD 1077

Query: 212  YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
             M +    L  ++   + +I+M G+ G + KAL+V       +  E   DV +W S+L
Sbjct: 1078 QM-KSSFGLKPNLKHYACVIDMLGRAGQLDKALRV---VAEEMSEE--ADVGIWKSLL 1129


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 126/338 (37%), Positives = 197/338 (58%), Gaps = 13/338 (3%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +   + KS      FVG ALID+Y+K  ++  AE + D +  +  V  NA++SG+   K 
Sbjct: 452 IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQ 511

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                +    M  +G+D D+FT + +L  CA L   E G+Q+HA +I+K   L +D ++ 
Sbjct: 512 SEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKK--ELQSDAYIS 569

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+L++MY KCG     +Q F L     E   N+D V W +M+  Y ++G  +E +K++E 
Sbjct: 570 STLVDMYSKCG----NMQDFQLI---FEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEY 622

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M +   KP+   F+ V+ AC H G V+ G+ YF  M+ +Y L+P  EHYSC+VD++ R+G
Sbjct: 623 MQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSG 682

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           ++ KA +LI  M       +   +W  LLS C   G  E+ + AA   L+L+P +   YV
Sbjct: 683 QVSKALELIEGM----PFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYV 738

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YA   MW+E+ +LR++M+  GLKK+ GCSWIE+
Sbjct: 739 LLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEI 776



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 106/460 (23%), Positives = 197/460 (42%), Gaps = 70/460 (15%)

Query: 33  KKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           + ++G        +  R+ + +N +IS +  NG     +  F  M   G   D       
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L + +S++D   G Q+     K G+   V  GSAL+D+YAK   +  +   F  +P KN 
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNW 240

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  +A+++G  +     GGLEL + M   G+     T +++ R+CAGLSA   G Q+H +
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGH 300

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLE---------------- 255
            ++   + G DV + ++ ++MY KC  ++ A ++FN L  H L+                
Sbjct: 301 ALK--TDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGL 358

Query: 256 ------------------GEI--------------NKDVVLWTSMLGVYGRNGYFKEVIK 283
                             G++                ++ +  ++L +YG+ G   E   
Sbjct: 359 GLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACL 418

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD--YKLEPGPEHYS--CL 339
           ++E M+      D V++  +I+A    G  +  +  F   +H+   K   G + +    L
Sbjct: 419 VFEEMV----SRDAVSWNAIIAAHEQNGNEEKTLSLF---IHNRIIKSRLGLDSFVGIAL 471

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL- 398
           +D+  + G ++KA KL + + ++     +V  W A++S      + E  +    K LE+ 
Sbjct: 472 IDMYSKCGMMEKAEKLHDRLAEQ-----TVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG 526

Query: 399 -DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
            DP N   Y  + +  A     +   Q+   + +K L+ D
Sbjct: 527 VDPDNF-TYATILDTCANLVTVELGKQIHAQIIKKELQSD 565



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 45/287 (15%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  +  + +N +IS F        A KTFS M   G+  D +   + L    ++     G
Sbjct: 491 LAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG 550

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ A + K    S  ++ S L+D+Y+K   + D +L+F++ P ++ V  NA++ GY + 
Sbjct: 551 KQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQH 610

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    L++   M    +  +H T  A+LRAC  +   E G      M+    N G D  
Sbjct: 611 GLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLS---NYGLDPQ 667

Query: 226 MQ--SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML-------------- 269
           ++  S ++++ G+ G V+KAL++  + G   E     D V+W ++L              
Sbjct: 668 LEHYSCVVDIMGRSGQVSKALEL--IEGMPFEA----DAVIWRTLLSICKIHGNVEVAEK 721

Query: 270 --------------------GVYGRNGYFKEVIKLYEAMLMNGTKPD 296
                                +Y   G + EV KL + M  NG K +
Sbjct: 722 AAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKE 768



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 151/382 (39%), Gaps = 78/382 (20%)

Query: 45  FLNPRNPLPFNVV-ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           F N ++  PF  + IS F    +     KTFS  H+     D  ALC             
Sbjct: 15  FFNFQSKSPFKTLPISPFSSYQATPTKKKTFS--HIFQECSDRKALCP------------ 60

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            GKQ  A +  + +  +VFV + LI +Y K   +  A  +FD +P +++V  NA+L GY 
Sbjct: 61  -GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYA 119

Query: 164 EAKLWAGGLELVRLMPA-------------------------------LGLDYDHFTLSA 192
                    +L   MP                                +G  +D  T + 
Sbjct: 120 GRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAV 179

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L++C+ L     G Q+H   ++       DV   S+L++MY KC  +  ++Q F    H
Sbjct: 180 VLKSCSSLEDHGGGIQIHGLAVK--MGFDCDVVTGSALLDMYAKCKKLDCSIQFF----H 233

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
            +     K+ V W++++    +N   +  ++L++ M   G    +  F +V  +C+    
Sbjct: 234 SMP---EKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSA 290

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEM----------- 359
           ++LG +      H  K + G +    +  +D+  +   L  A KL N +           
Sbjct: 291 LRLGSQLHG---HALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAI 347

Query: 360 ------LDRGHGSSSVSMWGAL 375
                  D+G G   VS+ GA 
Sbjct: 348 IVGYARSDKGLGLDEVSLSGAF 369


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/407 (33%), Positives = 218/407 (53%), Gaps = 15/407 (3%)

Query: 45  FLNPRNPLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           F   +NP PF  N +I  + R+ +P  A+  + FM   G+ +D Y     L A   +   
Sbjct: 68  FTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAV 127

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           + G++    V K+G+ S +FV +ALI  Y        A  +FDE  V++ V  N +++ +
Sbjct: 128 KLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAH 187

Query: 163 CEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR-KCCNL 220
               L     +L+  M  L  L  D  T+ +L+ ACA L   E G+ +H+Y        +
Sbjct: 188 LNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEI 247

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             D+ ++++L++MY KCG +  ALQVF     R       +V  W +++G    +G+ ++
Sbjct: 248 NCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-------NVFTWNALIGGLAMHGHGED 300

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            I L++ M  +   PD+V F+ ++ ACSH G V  G+  F+ M + +++EP  EHY C+V
Sbjct: 301 AISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVV 360

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLLCRA ++D A   I  M  + +      +W  LL AC   G F+L +   ++ +EL+P
Sbjct: 361 DLLCRARKVDDALAFIENMPIKANS----VLWATLLGACRSGGHFDLAEKIGRRVIELEP 416

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            + G YVMLSNLYA    WD   +LR+ MK KG++K  GCSWIE+ G
Sbjct: 417 DSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNG 463



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 48/342 (14%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           FL T+  C+S++ +         KQ  A + ++  L +    S LI   A   L H  +L
Sbjct: 16  FLKTH--CTSISKT---------KQAHALLLRTHLLHNPLFSSKLISFLA---LSHSGDL 61

Query: 143 -----MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
                +F ++   +    N ++ GY  ++     + L   M   G+  D++T   +L AC
Sbjct: 62  NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAAC 121

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A L A + GR+ H  +++     G+D+F+ ++LI+ Y  CG    A  VF+ +  R    
Sbjct: 122 ARLGAVKLGRRFHCEVLKN--GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVR---- 175

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLG 316
              DVV W  M+  +   G  ++   L + M  ++  +PDEV  V+++ AC+  G ++ G
Sbjct: 176 ---DVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG 232

Query: 317 IEYFEWMVHDYKLEPGPEHYSC-------LVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
                  +H Y  E      +C       LVD+  + G +D A ++   M  R     +V
Sbjct: 233 -----KFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-----NV 282

Query: 370 SMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
             W AL+   A H  G+  +      +  +L P +V    +L
Sbjct: 283 FTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALL 324


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/400 (32%), Positives = 219/400 (54%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+ + +  +I+   + G    A++ F  M    +  + Y   + ++   ++    +G
Sbjct: 278 MSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWG 337

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ A +   G  +S+ V ++++ +YAK   +  + ++F E+  ++ V  + +++GY + 
Sbjct: 338 EQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQG 397

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              +   EL+  M   G     F L+++L AC  ++  E G+Q+HAY++     L +   
Sbjct: 398 GHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVL--SIGLEHTAM 455

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+LI MY KCG + +A ++F+ A        N D+V WT+M+  Y  +GY +EVI L+
Sbjct: 456 VLSALINMYCKCGSIEEASRIFDAAE-------NDDIVSWTAMINGYAEHGYSREVIDLF 508

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E +   G +PD V F+ V+SACSH G V LG  YF  M   Y++ P  EHY C++DLLCR
Sbjct: 509 EKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCR 568

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L  A  +I  M    H    V  W  LL AC   G  E G+  A++ L+L+P+  G 
Sbjct: 569 AGRLSDAEHMIEAM--PFHRDDVV--WSTLLRACRVHGDVERGRRTAERILQLEPNCAGT 624

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           ++ L+N+YA    W E   +R+LMK KG+ K+ G SWI+V
Sbjct: 625 HITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKV 664



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 169/352 (48%), Gaps = 16/352 (4%)

Query: 17  IIFQSRLMLPYTTCRHKK-----NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYAL 71
           I F S+  LP +  + K+     +LG        ++ ++ + +  +IS +        AL
Sbjct: 41  IHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEAL 100

Query: 72  KTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL 130
             F  M V  G+ +D + L  +  A     D  +G+ +  +  K+G ++SVFVGSAL+D+
Sbjct: 101 LLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDM 160

Query: 131 YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
           Y K   I +   +F E+P++N V   A+++G   A      L     M    ++YD +T 
Sbjct: 161 YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTF 220

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           +  L+ACA   A  +GR++HA  ++K  ++ +  F+ ++L  MY KCG +   L +F   
Sbjct: 221 AIALKACADSGALNYGREIHAQAMKKGFDVSS--FVANTLATMYNKCGKLEYGLTLFEKM 278

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
             R       DVV WT+++    + G  +  ++ +  M  +   P+E  F  VIS C++ 
Sbjct: 279 SMR-------DVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
            +++ G +    ++H   L       + ++ +  + G+L  +  + +EM  R
Sbjct: 332 ARIEWGEQLHALILH-LGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRR 382


>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
 gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
          Length = 603

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/438 (31%), Positives = 234/438 (53%), Gaps = 50/438 (11%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-----GIFLDTYALCSSLTASTSVKD 101
           + RN + +N ++S    +G    AL+  + +        G+ +D + + S  TA   ++ 
Sbjct: 132 DARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIRA 191

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           AR  +++   V  SG   +V + +A+++ Y+K   + +A  +FD+I ++++V   +++SG
Sbjct: 192 ARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISG 251

Query: 162 YCEAKLWAGGLELVRLMP-------------------------------ALGLDYDHFTL 190
           YC+ K     L++  +MP                               A G+    F L
Sbjct: 252 YCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFAL 311

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGND---VFMQSSLIEMYGKCGLVTKALQVF 247
            ++L ACA L     G+++H  ++R+  ++G+D   +F+ ++L++MY KCG +T A+ VF
Sbjct: 312 VSVLGACAKLGLVTRGKELHCSILRR--SIGSDPFNIFIHNALVDMYSKCGDMTAAMAVF 369

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
               HR+     +D + W SM+  +  NG  K+ + ++E ML+ G +P  V F+ V++AC
Sbjct: 370 ----HRMP---ERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTAC 422

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           SH+G V  G    E M  D+ +EP  EHY+  +D L R  +L++A + I ++  R  G  
Sbjct: 423 SHSGLVSNGRLILESM-EDHGVEPRAEHYAAFIDALGRNRQLEEAIEFIKDLPSRI-GPG 480

Query: 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRE 427
           +   WGALL AC   G  EL +  A+   +L+P N G YVMLSN+YA    WD+  ++R 
Sbjct: 481 TAGSWGALLGACRLHGNIELAEEVAEFLFKLEPGNSGRYVMLSNIYAAAGQWDDARRVRG 540

Query: 428 LMKEKGLKKDVGCSWIEV 445
           LMKEKGLKKD   SWIEV
Sbjct: 541 LMKEKGLKKDQAYSWIEV 558



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 135/326 (41%), Gaps = 69/326 (21%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G+ V A + K+   S   + + L+ LY++L     A   FD++P KN+   N LL+  
Sbjct: 53  RLGRAVHARLVKTALTSHTLLSNRLVALYSRLPSSAAAVAAFDDLPHKNAHSYNTLLAAL 112

Query: 163 C-EAKLWAGGLELVRLMPA--------------------------------------LGL 183
                 +   L L   MPA                                       GL
Sbjct: 113 LRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPGL 172

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
             D FT+ ++  ACAG+ AA   R++H  ++     L   V M ++++  Y K   V +A
Sbjct: 173 AMDRFTVVSVATACAGIRAARPLREMHGAVVVSGMEL--TVIMANAMVNAYSKAWRVEEA 230

Query: 244 LQVFN-------------LAGH----RLEGEI-------NKDVVLWTSMLGVYGRNGYFK 279
             +F+             ++G+    +L+  +       +KD V WT+++  + +NG   
Sbjct: 231 RHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEED 290

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---Y 336
             ++L+E ML  G  P   A V+V+ AC+  G V  G E     +    +   P +   +
Sbjct: 291 TALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKE-LHCSILRRSIGSDPFNIFIH 349

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDR 362
           + LVD+  + G++  A  + + M +R
Sbjct: 350 NALVDMYSKCGDMTAAMAVFHRMPER 375



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 138/351 (39%), Gaps = 47/351 (13%)

Query: 34  KNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           K L         +  ++ + +  +IS   +NG    AL+ F  M   G+   T+AL S L
Sbjct: 256 KKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVL 315

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLS---SVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
            A   +     GK++   + +    S   ++F+ +AL+D+Y+K   +  A  +F  +P +
Sbjct: 316 GACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPER 375

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + +  N++++G+    L    L +   M   G+   H T  A+L AC+       GR + 
Sbjct: 376 DFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLI- 434

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
                               +E     G+  +A                     + + + 
Sbjct: 435 --------------------LESMEDHGVEPRAEH-------------------YAAFID 455

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
             GRN   +E I+  + +          ++  ++ AC   G ++L  E  E++   +KLE
Sbjct: 456 ALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFL---FKLE 512

Query: 331 PGPE-HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           PG    Y  L ++   AG+ D A ++   M ++G        W  + S  H
Sbjct: 513 PGNSGRYVMLSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSWIEVRSLKH 563


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 229/395 (57%), Gaps = 16/395 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I+ + +N  P+ A   F  M ++G   D   L S  +     +D +  + V   + 
Sbjct: 385 WNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIM 444

Query: 114 KSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
           + GWL   V +G+A++D+YAKL L+  A  +F+ I VK+ +  N L++GY +  L +  +
Sbjct: 445 RRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAI 504

Query: 173 ELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           E+ ++M     +  +  T  ++L A A + A + G ++H  +I+   NL  DVF+ + LI
Sbjct: 505 EVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIK--TNLHLDVFVATCLI 562

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           ++YGKCG +  A+ +F    +++  E +   V W +++  +G +G+ ++ +KL+  ML  
Sbjct: 563 DVYGKCGRLVDAMSLF----YQVPQESS---VTWNAIISCHGIHGHAEKTLKLFGEMLDE 615

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G KPD V FV+++SACSH+G V+ G   F  M  +Y ++P  +HY C+VDLL RAG L+ 
Sbjct: 616 GVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEM 674

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
           A+  I +M  +       S+WGALL AC   G  ELGK A+ +  E+D  NVG YV+LSN
Sbjct: 675 AYGFIKDMPLQ----PDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSN 730

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +YA    W+ + ++R L +E+GLKK  G S IEV 
Sbjct: 731 IYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVN 765



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 178/417 (42%), Gaps = 50/417 (11%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS   +NG+   AL     M + GI ++   + S L     + D      +  +V 
Sbjct: 284 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVI 343

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G    +FV +ALI++YAK   + DA   F ++ + + V  N++++ Y +         
Sbjct: 344 KHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHG 403

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M   G   D  TL +L    A     +  R VH +++R+   L  DV + +++++M
Sbjct: 404 FFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGW-LMEDVVIGNAVVDM 462

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NG 292
           Y K GL+  A +VF +        + KDV+ W +++  Y +NG   E I++Y+ M     
Sbjct: 463 YAKLGLLDSAHKVFEII-------LVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKE 515

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL--- 349
             P++  +V+++ A +H G ++ G+      V    L       +CL+D+  + G L   
Sbjct: 516 IIPNQGTWVSILPAYAHVGALQQGMR-IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDA 574

Query: 350 ----------------------------DKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
                                       +K  KL  EMLD G     V+ + +LLSAC  
Sbjct: 575 MSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT-FVSLLSACSH 633

Query: 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
            G  E GK   +   E        Y +  +L    CM D +G+   L    G  KD+
Sbjct: 634 SGFVEEGKWCFRLMQE--------YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDM 682



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 184/413 (44%), Gaps = 45/413 (10%)

Query: 35  NLG--TLTNC-LKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALC 90
           NLG  +L+ C    +  ++   +N +IS +  NG    A+  F   + V  I  D Y   
Sbjct: 163 NLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFP 222

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
             L A  ++ D   G+++     K G+  +VFV ++LI +Y++      A  +FD++P +
Sbjct: 223 PVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR 279

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           +    NA++SG  +    A  L+++  M   G+  +  T+ ++L  C  L        +H
Sbjct: 280 DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIH 339

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            Y+I+    L  D+F+ ++LI MY K G +  A + F       +     DVV W S++ 
Sbjct: 340 LYVIKH--GLEFDLFVSNALINMYAKFGNLEDARKAF-------QQMFITDVVSWNSIIA 390

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA------CSHTGQVKLGIEYFEWMV 324
            Y +N         +  M +NG +PD +  V++ S       C ++  V   I    W++
Sbjct: 391 AYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLM 450

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG- 383
            D  +       + +VD+  + G LD A K+   +L +      V  W  L++     G 
Sbjct: 451 EDVVIG------NAVVDMYAKLGLLDSAHKVFEIILVK-----DVISWNTLITGYAQNGL 499

Query: 384 ---KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
                E+ K+  ++  E+ P N G +V +   YA       +G L++ M+  G
Sbjct: 500 ASEAIEVYKM-MEECKEIIP-NQGTWVSILPAYA------HVGALQQGMRIHG 544



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 130/280 (46%), Gaps = 27/280 (9%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           F K + A +  +G + S+F+ + L++LYA L  +  +   FD+IP K+    N+++S Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 164 EAKLWAGGLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
               +   +    +L+    +  D +T   +L+AC  L     GR++H +  +       
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFK--LGFQW 248

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +VF+ +SLI MY + G    A  +F+    R       D+  W +M+    +NG   + +
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFR-------DMGSWNAMISGLIQNGNAAQAL 301

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSC 338
            + + M + G K + V  V+++  C   G +   +     ++H Y ++ G E      + 
Sbjct: 302 DVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM-----LIHLYVIKHGLEFDLFVSNA 356

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           L+++  + G L+ A K   +M       + V  W ++++A
Sbjct: 357 LINMYAKFGNLEDARKAFQQMF-----ITDVVSWNSIIAA 391


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 231/397 (58%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I  + RN     AL  F  M   G     + + S L+A     DA   K++
Sbjct: 117 RSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL 176

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K+    +++VG+AL+DLYAK  +I DA  +F+ +  K+SV  +++++GY + K +
Sbjct: 177 HCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNY 236

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L R    + L+ + FTLS+++ AC+ L+A   G+Q+HA + +     G++VF+ S
Sbjct: 237 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS--GFGSNVFVAS 294

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           S ++MY KCG + ++  +F+           K++ LW +++  + ++   KEV+ L+E M
Sbjct: 295 SAVDMYAKCGSLRESYIIFSEVQE-------KNLELWNTIISGFAKHARPKEVMILFEKM 347

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G  P+EV F +++S C HTG V+ G  +F+ M   Y L P   HYSC+VD+L RAG 
Sbjct: 348 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGL 407

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A++LI  +        + S+WG+LL++C      EL ++AA+K  EL+P N G +V+
Sbjct: 408 LSEAYELIKSI----PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVL 463

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W+EI + R+L+++  +KK  G SWI++
Sbjct: 464 LSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDI 500



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 127/255 (49%), Gaps = 19/255 (7%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           + LI+ Y+K   +  A  +FD +  ++ V  N ++  Y   ++ +  L++   M   G  
Sbjct: 92  NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 151

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
           +  FT+S++L AC     A   +++H   ++ C +L  ++++ ++L+++Y KCG++  A+
Sbjct: 152 FSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDL--NLYVGTALLDLYAKCGMIKDAV 209

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           QVF       E   +K  V W+SM+  Y +N  ++E + LY        + ++    +VI
Sbjct: 210 QVF-------ESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVI 262

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDR 362
            ACS+   +  G +    +    K   G   +  S  VD+  + G L +++ + +E+ ++
Sbjct: 263 CACSNLAALIEGKQMHAVIC---KSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEK 319

Query: 363 GHGSSSVSMWGALLS 377
                ++ +W  ++S
Sbjct: 320 -----NLELWNTIIS 329



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 102/201 (50%), Gaps = 1/201 (0%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + ++ +++ + +N +   AL  +       +  + + L S + A +++     G
Sbjct: 215 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 274

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ A + KSG+ S+VFV S+ +D+YAK   + ++ ++F E+  KN    N ++SG+ + 
Sbjct: 275 KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 334

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L   M   G+  +  T S+LL  C      E GR+    M R    L  +V 
Sbjct: 335 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLM-RTTYGLSPNVV 393

Query: 226 MQSSLIEMYGKCGLVTKALQV 246
             S ++++ G+ GL+++A ++
Sbjct: 394 HYSCMVDILGRAGLLSEAYEL 414



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 37/217 (17%)

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L+ CA   A    +  H  +IR   +L  DV + + LI  Y KCG V  A QVF     
Sbjct: 59  ILQLCARNGAVMEAKACHGKIIR--IDLEGDVTLLNVLINAYSKCGFVELARQVF----- 111

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS---- 308
             +G + + +V W +M+G+Y RN    E + ++  M   G K  E    +V+SAC     
Sbjct: 112 --DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCD 169

Query: 309 -------HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
                  H   VK  I        D  L  G    + L+DL  + G +  A ++   M D
Sbjct: 170 ALECKKLHCLSVKTCI--------DLNLYVG----TALLDLYAKCGMIKDAVQVFESMQD 217

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +    SSV+ W ++++       +E   L  ++A  +
Sbjct: 218 K----SSVT-WSSMVAGYVQNKNYEEALLLYRRAQRM 249


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/428 (34%), Positives = 228/428 (53%), Gaps = 17/428 (3%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           +  ++L+  Y  C    N   L      ++ RN   +NV+I  +  NG    A+  +  M
Sbjct: 37  LLATKLVNLYCICNSLTNAHLL---FDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQM 93

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
             +G+  D +     L A +++     GK++   V +SG  S VFVG+ALID+YAK   +
Sbjct: 94  RDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCV 153

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
             A  +FD+I  ++ VC N++L+ Y +       L L R+M   GL     T    + A 
Sbjct: 154 ESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAAS 213

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A       G+++H Y  R      + V  +++L++MY K G V  A  +F L    LE  
Sbjct: 214 ADNGLLPQGKELHGYSWRHGFESNDKV--KTALMDMYAKSGSVNVARSLFEL----LE-- 265

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
             K VV W +M+  Y  +G+  E + L++ M      PD + FV V++ACSH G +  G 
Sbjct: 266 -EKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGK 323

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            +F  M+ D+ + P  +HY+C++DLL   G L++A+KLI EM           +WGALL 
Sbjct: 324 MHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEM----RVEPDAGVWGALLH 379

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           +C   G  E+G+LA +K +EL+P + G YV+LSN+YA+   WD + +LR+LM  KGLKK 
Sbjct: 380 SCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKS 439

Query: 438 VGCSWIEV 445
           + CSWIEV
Sbjct: 440 IACSWIEV 447



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 145/291 (49%), Gaps = 20/291 (6%)

Query: 91  SSLTASTSVKDA-RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           +SL  S  V+ A   GKQ+ A + + G   +  + + L++LY     + +A L+FD I  
Sbjct: 5   ASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISK 64

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
           +N    N ++ GY     +   + L   M   GL  D FT   +L+AC+ LSA E G+++
Sbjct: 65  RNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKI 124

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H  +IR    L +DVF+ ++LI+MY KCG V  A QVF+    R       DVV W SML
Sbjct: 125 HKDVIRS--GLESDVFVGAALIDMYAKCGCVESARQVFDKIDER-------DVVCWNSML 175

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY--FEWMVHDY 327
             Y +NG   E + L   M  NG KP E  FV  I+A +  G +  G E   + W    +
Sbjct: 176 ATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWR---H 232

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
             E   +  + L+D+  ++G ++ A  L  E+L+       V  W A+++ 
Sbjct: 233 GFESNDKVKTALMDMYAKSGSVNVARSLF-ELLEE----KRVVSWNAMITG 278


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 229/431 (53%), Gaps = 49/431 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS    N     AL  F  + + GI  D++ L S LT    +   R GK++
Sbjct: 369 RDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEI 428

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC----- 163
            +     G  S+ FVG AL+++Y K   I  A++ FDEI  +++   NAL+SGY      
Sbjct: 429 HSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQI 488

Query: 164 ------------------------------EAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
                                         E K +   ++L   M    L  D +T+  +
Sbjct: 489 GKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGII 548

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L AC+ L+    G+QVHAY IR      +D  + ++L++MY KCG +    QV+N     
Sbjct: 549 LAACSKLATIHRGKQVHAYSIR--AGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKIS-- 604

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                N ++V   +ML  Y  +G+ +E I ++  ML +  +PD V F++V+S+C H G +
Sbjct: 605 -----NPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSI 659

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           K+G E F +++  Y + P  +HY+C+VDLL RAG+LD+A++LI  M      + SV+ W 
Sbjct: 660 KIGYECF-YLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPME---ADSVT-WS 714

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL  C    +  LG++AA+K +EL+P N G YV+L+NLYA    W ++ + RELM +KG
Sbjct: 715 ALLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKG 774

Query: 434 LKKDVGCSWIE 444
           ++K  GCSWIE
Sbjct: 775 MQKSPGCSWIE 785



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 181/396 (45%), Gaps = 44/396 (11%)

Query: 73  TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
            FS +H   +   TY+  + L +S S+     GKQ+ +H  K+G+ +  FV + L+ +Y+
Sbjct: 23  NFSLLHTPPLTSTTYS--TILQSSNSLT---LGKQLHSHSIKTGFYNHNFVQTKLLQMYS 77

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR--LMPALGLDYDHFTL 190
                 DA  MFD++ +KN     A+L  +    L+  G  L    L   LG   D F  
Sbjct: 78  INSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVF 137

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV---- 246
             +L  C GL   E GRQVH  +++       +V++ ++LI+MYGKCG + +A +V    
Sbjct: 138 PVVLNICCGLGDLELGRQVHGMVLKH--GFVTNVYVGNALIDMYGKCGSLDEAKKVLEGM 195

Query: 247 ------------------------FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
                                    +L  + L  E+  +VV W++++G +  N Y  E +
Sbjct: 196 TQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESV 255

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L+  M+  G  PD     +V+ ACS    + +G E   ++V  ++L       + LV +
Sbjct: 256 ELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVR-HELFSNGFVANALVGM 314

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF-ELGKLAAQKALELDPH 401
             R G++  A+K+ ++   +   S +  + G L +   + GK  EL     Q+ +E D  
Sbjct: 315 YRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENG--NVGKAKELFYQMEQEGVERD-- 370

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
            +    M+S     F   D +   R+L+ E G++ D
Sbjct: 371 RISWNCMISGHVDNFMFDDALMLFRDLLME-GIEPD 405



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/374 (21%), Positives = 157/374 (41%), Gaps = 81/374 (21%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           LD +     L     + D   G+QV   V K G++++V+VG+ALID+Y K   + +A+ +
Sbjct: 132 LDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKV 191

Query: 144 FDEIPVKNSVCAN-----------------------------------ALLSGYCEAKLW 168
            + +  K+ V  N                                   A++ G+      
Sbjct: 192 LEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYD 251

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +EL   M   G+  D  TL+++L AC+ +     G+++H Y++R    L ++ F+ +
Sbjct: 252 VESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRH--ELFSNGFVAN 309

Query: 229 SLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEINK--------------- 260
           +L+ MY +CG +  A ++F+             + G+   G + K               
Sbjct: 310 ALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVER 369

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           D + W  M+  +  N  F + + L+  +LM G +PD     ++++  +    ++ G E  
Sbjct: 370 DRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKE-- 427

Query: 321 EWMVHDYKLEPGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
              +H   +  G +  S     LV++ C+  ++  A    +E+ +R       S W AL+
Sbjct: 428 ---IHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISER-----DTSTWNALI 479

Query: 377 SACHDCGKFELGKL 390
           S    C   ++GK+
Sbjct: 480 SGYARCN--QIGKI 491



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 135/316 (42%), Gaps = 45/316 (14%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L  L P N + ++ VI  F  N   + +++ F+ M   G+  D   L S L A + +K  
Sbjct: 228 LSELEP-NVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWL 286

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GK++  ++ +    S+ FV +AL+ +Y +   +  A  +F +   K +   N ++ GY
Sbjct: 287 FVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGY 346

Query: 163 CE------AK-----------------------------LWAGGLELVRLMPALGLDYDH 187
            E      AK                             ++   L L R +   G++ D 
Sbjct: 347 LENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDS 406

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
           FTL ++L   A ++    G+++H+  I K   L ++ F+  +L+EMY KC  +  A   F
Sbjct: 407 FTLGSILTGFADMTCIRQGKEIHSIAIVK--GLQSNSFVGGALVEMYCKCNDIIAAQMAF 464

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
           +    R       D   W +++  Y R     ++ +L E M  +G +P+   + ++++  
Sbjct: 465 DEISER-------DTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGL 517

Query: 308 SHTGQVKLGIEYFEWM 323
               Q  L ++ F  M
Sbjct: 518 VENKQYDLAMQLFNEM 533


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 232/451 (51%), Gaps = 26/451 (5%)

Query: 1   NVHAHQFETGLLL-----ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFN 55
            +H+     GL L      CLI   ++  +  + C  +K    + +        N   + 
Sbjct: 292 QLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD-------HNVFSWT 344

Query: 56  VVISDFCRNGS-PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
            +I+ + + G     AL  F  M +  +  + +   S+L A  ++   R G+QV  H  K
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVK 404

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            G+ S   V ++LI +YA+   I DA   FD +  KN +  N ++  Y +       LEL
Sbjct: 405 LGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALEL 464

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              +   G+    FT ++LL   A +     G Q+HA +I+    L   V   ++LI MY
Sbjct: 465 FNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVC--NALISMY 522

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            +CG +  A QVF       E   +++V+ WTS++  + ++G+  + ++L+  ML  G +
Sbjct: 523 SRCGNIESAFQVF-------EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVR 575

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           P+EV ++ V+SACSH G V  G ++F+ M  ++ + P  EHY+C+VD+L R+G L +A +
Sbjct: 576 PNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQ 635

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
            IN M  +    +   +W   L AC   G  ELGK AA+  +E +PH+   Y++LSNLYA
Sbjct: 636 FINSMPYK----ADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYA 691

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
               WDE+  +R+ MKEK L K+ GCSW+EV
Sbjct: 692 SISKWDEVSNIRKAMKEKXLIKEAGCSWVEV 722



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 158/326 (48%), Gaps = 24/326 (7%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           + R+ + ++ ++S F  N     AL TF  M  +G + + Y   ++  A ++ +    G 
Sbjct: 129 SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGD 188

Query: 107 QVQAHVTKSGWLSS-VFVGSALIDLYAKLL-LIHDAELMFDEIPVKNSVCANALLSGYCE 164
            +   V K+G+L S V VG  LID++ K    +  A  +F+++P +N+V    +++   +
Sbjct: 189 SIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQ 248

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  ++L   M   G + D FTLS ++ ACA +     G+Q+H+  IR    L  D 
Sbjct: 249 FGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTL--DR 306

Query: 225 FMQSSLIEMYGKC---GLVTKALQVFNLAGHRLEGEINKDVVLWTSML-GVYGRNGYFKE 280
            +   LI MY KC   G +  A ++F+         ++ +V  WT+M+ G   + GY +E
Sbjct: 307 CVGCCLINMYAKCSVDGSMCAARKIFDQI-------LDHNVFSWTAMITGYVQKGGYDEE 359

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC-- 338
            + L+  M++    P+   F + + AC++   +++G + F    H  KL  G    +C  
Sbjct: 360 ALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF---THAVKL--GFSSVNCVA 414

Query: 339 --LVDLLCRAGELDKAWKLINEMLDR 362
             L+ +  R+G +D A K  + + ++
Sbjct: 415 NSLISMYARSGRIDDARKAFDILFEK 440



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T S  L+ C    + + G  VH  + +   +L  D    +SLI +Y KCG   KA  +F 
Sbjct: 68  TYSLFLKKCIRTRSFDIGTLVHEKLTQS--DLQLDSVTLNSLISLYSKCGQWEKATSIFR 125

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           L G       ++D++ W++M+  +  N      +  +  M+ NG  P+E  F     ACS
Sbjct: 126 LMGS------SRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS 179

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA-GELDKAWKLINEMLDR 362
               V +G   F +++    L+        L+D+  +  G+L  A+K+  +M +R
Sbjct: 180 TAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPER 234



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 144/342 (42%), Gaps = 23/342 (6%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+F    NP P    +     NG    A+ T   M   G   D       L      +  
Sbjct: 23  LQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 103 RFGKQVQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEI-PVKNSVCANALLS 160
             G  V   +T+S   L SV + S LI LY+K      A  +F  +   ++ +  +A++S
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNS-LISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVS 141

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            +    +    L     M   G   + +  +A  RAC+       G  +  ++I K   L
Sbjct: 142 CFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVI-KTGYL 200

Query: 221 GNDVFMQSSLIEMYGKC-GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
            +DV +   LI+M+ K  G +  A +VF       E    ++ V WT M+    + GY  
Sbjct: 201 QSDVCVGCGLIDMFVKGRGDLVSAFKVF-------EKMPERNAVTWTLMITRLMQFGYAG 253

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLEPGPEHYSC 338
           E I L+  M+ +G +PD      VISAC++   + LG + + + + H   L+       C
Sbjct: 254 EAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG--CC 311

Query: 339 LVDLLCRA---GELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           L+++  +    G +  A K+ +++LD      +V  W A+++
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDH-----NVFSWTAMIT 348


>gi|225217042|gb|ACN85326.1| EMB2261 putative [Oryza brachyantha]
          Length = 626

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/396 (34%), Positives = 223/396 (56%), Gaps = 20/396 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  +IS F RN     A++ F S + ++G+  D     S +TA  ++K    G+Q  A V
Sbjct: 210 YTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRENQGRQAHAQV 269

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G   +V V S+ +D+YAK   + +A  +FD + V+N V   ALL GYC+   +   +
Sbjct: 270 VTRGLCGNVIVESSTLDMYAKCGSMVEARKVFDRMLVRNEVSWCALLGGYCQNGEYEKVV 329

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSL 230
            L R M     D D ++L  +LRACAGLS+ + G+++H   +R    +G   DV ++S+L
Sbjct: 330 ALFREMDKK--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLR----MGGWRDVVVESAL 383

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           +++Y KCG V  A  VF       E    ++ + W +M+G + +NG+ +  I L++ M+ 
Sbjct: 384 VDLYAKCGAVDYAYTVF-------EASTVRNTITWNAMIGGFAQNGHGERAINLFDRMVR 436

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G +PD ++FV+V+ ACSHTG V+ G +YF  M ++Y + PG EHY+C+VDLL R   L+
Sbjct: 437 EGPRPDYISFVSVLFACSHTGMVEQGRKYFNSMSNNYTIAPGIEHYNCMVDLLSRVELLE 496

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +A  LIN+   RG      S+W A+L A       ++ +  A+K +EL P     YV+L 
Sbjct: 497 EAEDLINKSPFRGDS----SLWAAILGASATHSNPDVAERVAKKMMELQPQYHLSYVLLE 552

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           N+Y     W++  ++R LM+ + +KK+ G SWI+  
Sbjct: 553 NVYRTVGRWEDALEIRRLMESRKVKKEPGMSWIDAN 588



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 173/396 (43%), Gaps = 53/396 (13%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYA 88
           R  ++L         L  R+ +  + +++ F R G P  AL +   M      +  + +A
Sbjct: 84  RLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRSMLAEADDVSPNAHA 143

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
             +++ A + ++D   G  +   +   G+     V SAL+D+Y       DA+  F+E+ 
Sbjct: 144 FSAAVKACSVLRDRNAGACLHGSILVRGFGDDDIVLSALVDMYGHASAPSDAQKAFEEMR 203

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGR 207
             + +C  +L+S +     +   +   R M  + G+  D  T  +++ A   L     GR
Sbjct: 204 APDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRENQGR 263

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q HA ++ +   L  +V ++SS ++MY KCG + +A +VF+         + ++ V W +
Sbjct: 264 QAHAQVVTR--GLCGNVIVESSTLDMYAKCGSMVEARKVFDRM-------LVRNEVSWCA 314

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           +LG Y +NG +++V+ L+    M+    D  +  TV+ AC+    VK G E     +H  
Sbjct: 315 LLGGYCQNGEYEKVVALFRE--MDKKDGDWYSLGTVLRACAGLSSVKPGKE-----IHCR 367

Query: 328 KLEPGPEH----YSCLVDLLCRAGELDKAWKLI-----------NEML----DRGHGSSS 368
            L  G        S LVDL  + G +D A+ +            N M+      GHG  +
Sbjct: 368 FLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEASTVRNTITWNAMIGGFAQNGHGERA 427

Query: 369 VSMWG---------------ALLSACHDCGKFELGK 389
           ++++                ++L AC   G  E G+
Sbjct: 428 INLFDRMVREGPRPDYISFVSVLFACSHTGMVEQGR 463



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 31/294 (10%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL--LIHDAELMFDEIPVKNSVCANALLS 160
           R G  + A   + G L+  ++ +AL+  Y +L   L H A   FD++P ++ V  +++L+
Sbjct: 54  RLGYCIHARAARGGLLADRYLANALLSFYVRLPRHLPH-ALRAFDDLPRRDVVAHSSILA 112

Query: 161 GYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
            +  A +    L  +R M A   D   +    SA ++AC+ L     G  +H  ++ +  
Sbjct: 113 AFLRAGMPRRALASLRSMLAEADDVSPNAHAFSAAVKACSVLRDRNAGACLHGSILVR-- 170

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
             G+D  + S+L++MYG     + A + F       E     D + +TS++  + RN +F
Sbjct: 171 GFGDDDIVLSALVDMYGHASAPSDAQKAF-------EEMRAPDGICYTSLISAFVRNDWF 223

Query: 279 KEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-----DYKLEPG 332
           +E ++ + +ML MNG +PD   F ++++A  +  +   G +    +V      +  +E  
Sbjct: 224 EEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRENQGRQAHAQVVTRGLCGNVIVE-- 281

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
               S  +D+  + G + +A K+ + ML R   S     W ALL      G++E
Sbjct: 282 ----SSTLDMYAKCGSMVEARKVFDRMLVRNEVS-----WCALLGGYCQNGEYE 326


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 233/443 (52%), Gaps = 18/443 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +H    + GLL    +   + L+  Y+ C   ++L            RN + ++ +++ 
Sbjct: 231 QIHGITVKNGLL--GFVALSNALVTMYSKC---ESLNEACKMFDSSGDRNSITWSAMVTG 285

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +NG  L A+K FS M   GI    Y +   L A + +     GKQ+ + + K G+   
Sbjct: 286 YSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERH 345

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +F  +AL+D+YAK   + DA   FD +  ++     +L+SGY +       L L R M  
Sbjct: 346 LFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKT 405

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  +  T++++L+AC+ L+  E G+QVH + I+     G +V + S+L  MY KCG  
Sbjct: 406 AGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH--GFGLEVPIGSALSTMYTKCG-- 461

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             +L+  NL   R     NKDVV W +M+     NG   E ++L+E ML  GT+PD+V F
Sbjct: 462 --SLEDGNLVFRRTP---NKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTF 516

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V +ISACSH G V+ G  YF  M   + L+P  +HY+C+VD+L RAG+L +  + I E  
Sbjct: 517 VNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKETKEFI-ESA 575

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
              HG   + +W  LLSAC + G  ELG  A +K + L       YV L+ +Y       
Sbjct: 576 SIDHG---LCLWRILLSACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGIYTALGRMR 632

Query: 421 EIGQLRELMKEKGLKKDVGCSWI 443
           ++ ++ +LM+  G+ K+VGCSWI
Sbjct: 633 DVERVWKLMRTNGVSKEVGCSWI 655



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 154/331 (46%), Gaps = 43/331 (12%)

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           A+ SSL A+  V     G+Q+     K+G L  V + +AL+ +Y+K   +++A  MFD  
Sbjct: 215 AVLSSLAATVYVG---LGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSS 271

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
             +NS+  +A+++GY +       ++L   M + G+    +T+  +L AC+ +     G+
Sbjct: 272 GDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGK 331

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q+H+++++        +F  ++L++MY K G +  A + F+    R       DV LWTS
Sbjct: 332 QLHSFLLK--LGFERHLFATTALVDMYAKAGCLADARKGFDCLQER-------DVALWTS 382

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHD 326
           ++  Y +N   +E + LY  M   G  P++    +V+ ACS    ++LG + +   + H 
Sbjct: 383 LISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHG 442

Query: 327 YKLE---------------------------PGPE--HYSCLVDLLCRAGELDKAWKLIN 357
           + LE                           P  +   ++ ++  L   G+ D+A +L  
Sbjct: 443 FGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFE 502

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           EML  G     V+    ++SAC   G  E G
Sbjct: 503 EMLAEGTEPDDVTFVN-IISACSHKGFVERG 532



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 153/340 (45%), Gaps = 43/340 (12%)

Query: 49  RNPLPFNVVISDFCRNG---SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ + +N +I+ + +NG   S    ++ F  M    I  + Y L     A +S++    G
Sbjct: 80  KDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSCTVG 139

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE-IPVKNSVCANALLSGYC- 163
           +Q  A V K      ++V ++L+ +Y K  L +   + +   +  K  V    L S  C 
Sbjct: 140 RQAHALVVKMSSFGDIYVDTSLVGMYCKAGLKYLYMVYYGFWLCYKKDVLRRQLKSSICF 199

Query: 164 -EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            E K                 D D +  +A+L + A       GRQ+H   ++    L  
Sbjct: 200 LEEKEKES-------------DSD-YVFTAVLSSLAATVYVGLGRQIHGITVKN--GLLG 243

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            V + ++L+ MY KC  + +A ++F+ +G R       + + W++M+  Y +NG   E I
Sbjct: 244 FVALSNALVTMYSKCESLNEACKMFDSSGDR-------NSITWSAMVTGYSQNGESLEAI 296

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
           KL+  M   G KP E   V V++ACS    +  G +     +H + L+ G E +    + 
Sbjct: 297 KLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQ-----LHSFLLKLGFERHLFATTA 351

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           LVD+  +AG L  A K  + + +R      V++W +L+S 
Sbjct: 352 LVDMYAKAGCLADARKGFDCLQER-----DVALWTSLISG 386



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 5/160 (3%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           F  T  L  +LT  +  ++   G+ V A + ++G  +     + L++ YAK   +  A  
Sbjct: 13  FSHTSTLLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHS 72

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGG---LELVRLMPALGLDYDHFTLSALLRACAG 199
           +F+ I  K+ V  N+L++GY +    +     ++L R M A  +  + +TL+ + +A + 
Sbjct: 73  IFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESS 132

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
           L +   GRQ HA ++ K  + G D+++ +SL+ MY K GL
Sbjct: 133 LQSCTVGRQAHA-LVVKMSSFG-DIYVDTSLVGMYCKAGL 170



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 21/149 (14%)

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSS--LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           GR VHA +IR     G     Q +  L+  Y KCG + KA  +FN         I KDVV
Sbjct: 35  GRAVHAQIIRT----GTSTCTQHANVLVNFYAKCGQLAKAHSIFNAI-------ICKDVV 83

Query: 264 LWTSMLGVYGRNGYFKE---VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
            W S++  Y +NG       V++L+  M      P+      +  A S      +G +  
Sbjct: 84  SWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSCTVGRQAH 143

Query: 321 EWMVHDYKLEPGPEHY--SCLVDLLCRAG 347
             +V   K+    + Y  + LV + C+AG
Sbjct: 144 ALVV---KMSSFGDIYVDTSLVGMYCKAG 169


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 224/403 (55%), Gaps = 13/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
              L  ++ + +N +IS + +    + AL  F  MH  GI  +   L + L ++  ++  
Sbjct: 417 FNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVV 476

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
              +QV     KSG+ S ++V ++LID Y K   + DAE +F+E  + + V   ++++ Y
Sbjct: 477 HVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAY 536

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       L+L   M  + L  D F  S+LL ACA LSA E G+Q+H ++++    L  
Sbjct: 537 AQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVL-- 594

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D+F  +SL+ MY KCG +  A + F+    R        +V W++M+G   ++G+ ++ +
Sbjct: 595 DIFAGNSLVNMYAKCGSIDDAGRAFSELTER-------GIVSWSAMIGGLAQHGHGRQAL 647

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L+  ML  G  P+ +  V+V+ AC+H G V     YFE M   +  +P  EHY+C++DL
Sbjct: 648 QLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDL 707

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG++++A +L+N+M       ++ S+WGALL A       ELG+ AA+    L+P  
Sbjct: 708 LGRAGKINEAVELVNKM----PFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEK 763

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G +V+L+N+YA    W+ + ++R LM++  +KK+ G SWIEV
Sbjct: 764 SGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEV 806



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 159/318 (50%), Gaps = 18/318 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HAH  ++GL     I  ++ L+  Y+ CR   N G     +   +  + + ++ +IS 
Sbjct: 77  QIHAHITKSGLSDDPSI--RNHLINLYSKCR---NFGYARKLVDESSEPDLVSWSALISG 131

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +NG    AL  F  MH+ G+  + +   S L A + VKD R GKQV   V  SG+   
Sbjct: 132 YAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGD 191

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           VFV + L+ +YAK     D++ +FDEIP +N V  NAL S Y +       + L   M  
Sbjct: 192 VFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVL 251

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN--DVFMQSSLIEMYGKCG 238
            G+  + F+LS+++ AC GL  +  G+ +H Y+I+    LG   D F  ++L++MY K G
Sbjct: 252 SGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK----LGYDWDPFSANALVDMYAKVG 307

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A+ VF       E     D+V W +++     + + ++ ++L   M  +G  P+  
Sbjct: 308 DLADAISVF-------EKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIF 360

Query: 299 AFVTVISACSHTGQVKLG 316
              + + AC+  G  +LG
Sbjct: 361 TLSSALKACAGMGLKELG 378



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 170/347 (48%), Gaps = 22/347 (6%)

Query: 35  NLGTLTNCLK-FLNPRNP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
            +G L + +  F   + P  + +N VI+    +     AL+    M   GI  + + L S
Sbjct: 305 KVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSS 364

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           +L A   +     G+Q+ + + K    S +FV   L+D+Y+K  L+ DA + F+ +P K+
Sbjct: 365 ALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKD 424

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            +  NA++SGY +       L L   M   G+ ++  TLS +L++ AGL      RQVH 
Sbjct: 425 LIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHG 484

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
             ++      +D+++ +SLI+ YGKC  V  A ++F       E  I  D+V +TSM+  
Sbjct: 485 LSVKS--GFHSDIYVVNSLIDSYGKCSHVEDAERIFE------ECTIG-DLVSFTSMITA 535

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           Y + G  +E +KL+  M     KPD     ++++AC++    + G +     VH  K   
Sbjct: 536 YAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLH---VHILKYGF 592

Query: 332 GPEHYS--CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             + ++   LV++  + G +D A +  +E+ +RG     +  W A++
Sbjct: 593 VLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERG-----IVSWSAMI 634



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 141/291 (48%), Gaps = 23/291 (7%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L+   + K  R G Q+ AH+TKSG      + + LI+LY+K      A  + DE    + 
Sbjct: 63  LSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDL 122

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  +AL+SGY +  L  G L     M  LG+  + FT S++L+AC+ +     G+QVH  
Sbjct: 123 VSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGV 182

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           ++        DVF+ ++L+ MY KC     + ++F+    R       +VV W ++   Y
Sbjct: 183 VV--VSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPER-------NVVSWNALFSCY 233

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            +  +  E + L+  M+++G KP+E +  ++++AC+       G      ++H Y ++ G
Sbjct: 234 VQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG-----KIIHGYLIKLG 288

Query: 333 ----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
               P   + LVD+  + G+L  A  +  ++         +  W A+++ C
Sbjct: 289 YDWDPFSANALVDMYAKVGDLADAISVFEKI-----KQPDIVSWNAVIAGC 334


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/425 (32%), Positives = 231/425 (54%), Gaps = 17/425 (4%)

Query: 27  YTTCRHKKN------LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           +   RH  N      + ++      +  R+ + +N VI+   +NG    AL     M   
Sbjct: 134 FPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKE 193

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
            +  D++ L S L   T   +   GK++  +  + G+   VF+GS+LID+YAK   +  +
Sbjct: 194 NLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELS 253

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
              F  +  ++++  N++++G  +   +  GL   R M    +     + S+++ ACA L
Sbjct: 254 VCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHL 313

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
           +A   G+Q+HAY+IR      ++ F+ SSL++MY KCG +  A  +FN    ++E   ++
Sbjct: 314 TALNLGKQLHAYIIR--LGFDDNKFIASSLLDMYAKCGNIKMARYIFN----KIE-MCDR 366

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           D+V WT+++     +G+  + + L+E ML++G KP  VAF+ V++ACSH G V  G +YF
Sbjct: 367 DMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYF 426

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
             M  D+ + PG EHY+ + DLL RAG L++A+  I+ M +   G    S+W  LL+AC 
Sbjct: 427 NSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTG----SVWSTLLAACR 482

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
                EL +    K L +DP N+G +V++SN+Y+    W +  +LR  M++ GLKK   C
Sbjct: 483 AHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPAC 542

Query: 441 SWIEV 445
           SWIEV
Sbjct: 543 SWIEV 547



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 160/347 (46%), Gaps = 39/347 (11%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +I  +  +G   ++L +F+ +   GI  D +   S L AST  K     + + A V + G
Sbjct: 47  IIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLG 106

Query: 117 WLSSVFVGSALIDLYAKL----------------------LLIHDAELMFDEIPVKNSVC 154
           +   ++  +AL+++Y+K                       + I     +FD +PV++ V 
Sbjct: 107 FHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVS 166

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            N +++G  +  ++   L +V+ M    L  D FTLS++L      +    G+++H Y I
Sbjct: 167 WNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAI 226

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           R       DVF+ SSLI+MY KC  V  ++  F+L         N+D + W S++    +
Sbjct: 227 RH--GFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLS-------NRDAISWNSIIAGCVQ 277

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           NG F + +  +  ML    KP +V+F +VI AC+H   + LG +   +++     +    
Sbjct: 278 NGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIR-LGFDDNKF 336

Query: 335 HYSCLVDLLCRAGELDKAWKLIN--EMLDRGHGSSSVSMWGALLSAC 379
             S L+D+  + G +  A  + N  EM DR   S     W A++  C
Sbjct: 337 IASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVS-----WTAIIMGC 378


>gi|242093560|ref|XP_002437270.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
 gi|241915493|gb|EER88637.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
          Length = 597

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 144/417 (34%), Positives = 227/417 (54%), Gaps = 18/417 (4%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV-HGIFLDTYALC 90
           H    G      + +   + + +  +IS F RN     AL  F  M V  G++ D     
Sbjct: 193 HSGAPGDARRAFEEMRAPDGICYTSLISAFVRNDWFNEALLWFRAMVVADGVWPDGCTFG 252

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S +TA  ++K AR G++  A V   G   +V V S+ +D+YAK  ++ DA  +FD + V+
Sbjct: 253 SVMTALGNLKRARQGREAHAQVVTRGLCGNVIVESSTLDMYAKCGMMVDARKVFDRMKVR 312

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N+V   ALL GYC++ +    L L R M     D D ++   LLR+C+GLSA + G+++H
Sbjct: 313 NAVSWCALLGGYCQSGMHEKVLSLFRQM--YMEDDDWYSFGTLLRSCSGLSAVKLGKEIH 370

Query: 211 AYMIR-KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
              +R + C    DV ++S+L+++Y KCG+V  A +VF  +  R       +++ W +M+
Sbjct: 371 CRFMRMRGCR---DVIVESALVDLYAKCGVVEYAYRVFERSSVR-------NMITWNAMI 420

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
               +NG+ +  I L+  ML  G KPD ++F+ V+ ACSHTG V+ G  YF  M   Y +
Sbjct: 421 CGCAQNGHAERAISLFNEMLREGVKPDYISFIGVLFACSHTGMVEEGRNYFNSMSKVYGI 480

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
            PG EHY+C+VDLL R   L++A  L+N+   R       S+W A+L AC      ++  
Sbjct: 481 PPGIEHYNCIVDLLSRVEFLEEAEDLVNKSPFR----DDSSLWAAILGACATHTNPDVAV 536

Query: 390 LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
             A+K +EL+PH    YV+L N+Y     W++  ++R +MK + +KK+ G S I V 
Sbjct: 537 RVAKKMMELEPHFHLSYVLLENVYRTIGRWEDAVEVRRVMKSRKVKKEAGTSRIGVN 593



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 160/355 (45%), Gaps = 36/355 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG--------IFLDTYALCSSLTAST 97
           L  R+ +  + V++ F R G P  AL     M   G        +    +AL +S  A  
Sbjct: 98  LPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMASGGCGTDDDDDVAPRAHALSASAKACA 157

Query: 98  SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANA 157
            ++D R G  V   V   G+     V SAL+D+Y       DA   F+E+   + +C  +
Sbjct: 158 VLRDLRAGACVHGTVVVRGYGDDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDGICYTS 217

Query: 158 LLSGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           L+S +     +   L   R M  A G+  D  T  +++ A   L  A  GR+ HA ++ +
Sbjct: 218 LISAFVRNDWFNEALLWFRAMVVADGVWPDGCTFGSVMTALGNLKRARQGREAHAQVVTR 277

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
              L  +V ++SS ++MY KCG++  A +VF+    R       + V W ++LG Y ++G
Sbjct: 278 --GLCGNVIVESSTLDMYAKCGMMVDARKVFDRMKVR-------NAVSWCALLGGYCQSG 328

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE---YFEWM--VHDYKLEP 331
             ++V+ L+  M M     D  +F T++ +CS    VKLG E    F  M    D  +E 
Sbjct: 329 MHEKVLSLFRQMYMEDD--DWYSFGTLLRSCSGLSAVKLGKEIHCRFMRMRGCRDVIVE- 385

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
                S LVDL  + G ++ A+++      R     ++  W A++  C   G  E
Sbjct: 386 -----SALVDLYAKCGVVEYAYRVFERSSVR-----NMITWNAMICGCAQNGHAE 430



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 21/208 (10%)

Query: 122 FVGSALIDLYAKLL--LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           ++ +AL+  Y +L   L H A   FD++P ++ V  +++L+ +  A L    L  +R M 
Sbjct: 72  YLANALLAFYVRLPDHLPH-ALKAFDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMA 130

Query: 180 ALG--------LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           + G        +      LSA  +ACA L     G  VH  ++ +    G+D  + S+L+
Sbjct: 131 SGGCGTDDDDDVAPRAHALSASAKACAVLRDLRAGACVHGTVVVR--GYGDDGVVLSALV 188

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM- 290
           +MYG  G    A + F       E     D + +TS++  + RN +F E +  + AM++ 
Sbjct: 189 DMYGHSGAPGDARRAF-------EEMRAPDGICYTSLISAFVRNDWFNEALLWFRAMVVA 241

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIE 318
           +G  PD   F +V++A  +  + + G E
Sbjct: 242 DGVWPDGCTFGSVMTALGNLKRARQGRE 269


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/400 (34%), Positives = 218/400 (54%), Gaps = 22/400 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N V+++   +G PL  ++ +  +   G   +  + C+   A         G+Q 
Sbjct: 183 RNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQF 242

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC----E 164
              V K G+   V V ++++D Y K      A  +FD + V+NSV   ++++ Y     E
Sbjct: 243 HGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAE 302

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            + +A  L   R     G +   F +S+ L  CAGL     GR +HA  +R C +   ++
Sbjct: 303 EEAFAAYLGARRS----GEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDA--NI 356

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ S+L++MYGKCG V  A Q+F     R       ++V W +M+G Y   G  +  + +
Sbjct: 357 FVASALVDMYGKCGCVEDAEQIFYETPQR-------NLVTWNAMIGGYAHIGDAQNALLV 409

Query: 285 YEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           ++ M+ +G T P+ +  V VI++CS  G  K G E FE M   + +EP  EHY+C+VDLL
Sbjct: 410 FDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLL 469

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            RAG  ++A+++I  M  R     S+S+WGALL AC   GK ELG++AA+K  ELDP + 
Sbjct: 470 GRAGMEEQAYEVIQGMPMR----PSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDS 525

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           G +V+LSN++A    W E   +R+ MK  G+KKD GCSW+
Sbjct: 526 GNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWV 565



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 146/329 (44%), Gaps = 25/329 (7%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKD-ARFGKQVQAHV 112
           +   IS   ++G PL AL  F+ M   G+  + +   S+  A+ S    +  G Q+ +  
Sbjct: 85  YTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLA 144

Query: 113 TKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
            + G+L    FV  A +D+Y K   +  A  +F E+P +N V  NA+++    A L    
Sbjct: 145 IRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMT---NAVLDGRP 201

Query: 172 LELVR----LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           LE +     L  A GL  +  +  A   ACAG      G Q H ++++  C    DV + 
Sbjct: 202 LETIEAYFGLREAGGLP-NVVSACAFFNACAGAMYLSLGEQFHGFVVK--CGFEMDVSVL 258

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +S+++ YGKC    KA  VF+  G R       + V W SM+  Y +NG  +E    Y  
Sbjct: 259 NSMVDFYGKCRCAGKARAVFDGMGVR-------NSVSWCSMVAAYAQNGAEEEAFAAYLG 311

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
              +G +P +    + ++ C+    + LG       V    ++      S LVD+  + G
Sbjct: 312 ARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSC-IDANIFVASALVDMYGKCG 370

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            ++ A ++  E   R     ++  W A++
Sbjct: 371 CVEDAEQIFYETPQR-----NLVTWNAMI 394



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 12/243 (4%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTK-SGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           D   L ++  ++ + +  R G+   A   +      S F+ + L++LY+KL L   A   
Sbjct: 14  DPQLLAAAFESAIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAA 73

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA- 202
               P    V   A +SG  +       L     M  LGL  + FT  +  +A A     
Sbjct: 74  LASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPR 133

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKD 261
           +  G Q+H+  IR    L  D F+  + ++MY K G +  A  +F        GE+ N++
Sbjct: 134 STIGPQIHSLAIR-FGYLPVDPFVSCAALDMYFKTGRLKLARHLF--------GEMPNRN 184

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           VV W +++     +G   E I+ Y  +   G  P+ V+     +AC+    + LG ++  
Sbjct: 185 VVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHG 244

Query: 322 WMV 324
           ++V
Sbjct: 245 FVV 247


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 143/447 (31%), Positives = 245/447 (54%), Gaps = 18/447 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VH+   + GLL I  +   + L+  Y  C    +L       +F   +N + ++ +++ 
Sbjct: 240 QVHSLAIKNGLLAIVSV--ANALVTMYAKC---GSLDDAVRTFEFSGDKNSITWSAMVTG 294

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + + G    ALK F+ MH  G+    + L   + A + +     GKQ+ +   K G+   
Sbjct: 295 YAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQ 354

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           ++V SA++D+YAK   + DA   F+ +   + V   ++++GY +   + GGL L   M  
Sbjct: 355 LYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQM 414

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             +  +  T++++LRAC+ L+A + G+Q+HA +I+    L  +V + S+L  MY KCG +
Sbjct: 415 ERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKL--EVPIGSALSAMYTKCGSL 472

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
                +F     R+    ++DV+ W +M+    +NG+  + ++L+E ML+ G KPD V F
Sbjct: 473 DDGYLIF----WRMP---SRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTF 525

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V ++SACSH G V  G EYF+ M  ++ + P  EHY+C+VD+L RAG+L++A + I E  
Sbjct: 526 VNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFI-ESA 584

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
              HG   + +W  LL AC +   +ELG  A +K +EL       YV+LS++Y      +
Sbjct: 585 TVDHG---LCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIYTALGDRE 641

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVTG 447
            + ++R +MK +G+ K+ GCSWIE+ G
Sbjct: 642 NVERVRRIMKARGVNKEPGCSWIELKG 668



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 188/393 (47%), Gaps = 26/393 (6%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA   +TG   I  I   +  +  Y    H  +  TL + +   N ++ + +N +I+ F
Sbjct: 33  LHARILKTGS--ISSIYVTNTFLNLYAKTNHLSHALTLFDSIND-NDKDDVSWNSLINAF 89

Query: 62  CRN---GSPLYALKTFS-FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
            +N    S  +A+  F   M  + +  + + L    +A++++ D   GKQ  +   K+G 
Sbjct: 90  SQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGC 149

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
              V+VGS+L+++Y K   + DA  +FD +P +N+V    ++SGY  + +    +E+  L
Sbjct: 150 SGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFEL 209

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M       + F L+++L A         GRQVH+  I+    L   V + ++L+ MY KC
Sbjct: 210 MRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKN--GLLAIVSVANALVTMYAKC 267

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G +  A++ F  +G       +K+ + W++M+  Y + G   + +KL+  M  +G  P E
Sbjct: 268 GSLDDAVRTFEFSG-------DKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSE 320

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKL 355
              V VI+ACS    V  G +   +    +KL  G + Y  S +VD+  + G L  A K 
Sbjct: 321 FTLVGVINACSDLCAVVEGKQMHSFA---FKLGFGLQLYVLSAVVDMYAKCGSLADARKG 377

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
             E + +      V +W ++++     G +E G
Sbjct: 378 F-ECVQQ----PDVVLWTSIITGYVQNGDYEGG 405



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 168/351 (47%), Gaps = 24/351 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS +  +     A++ F  M       + +AL S L+A TS      G+QV
Sbjct: 182 RNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQV 241

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +   K+G L+ V V +AL+ +YAK   + DA   F+    KNS+  +A+++GY +    
Sbjct: 242 HSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDS 301

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M + G+    FTL  ++ AC+ L A   G+Q+H++  +     G  +++ S
Sbjct: 302 DKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFK--LGFGLQLYVLS 359

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           ++++MY KCG +  A + F       E     DVVLWTS++  Y +NG ++  + LY  M
Sbjct: 360 AVVDMYAKCGSLADARKGF-------ECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKM 412

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPEHYSCLVDLLCRAG 347
            M    P+E+   +V+ ACS    +  G +    ++ + +KLE      S L  +  + G
Sbjct: 413 QMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIG--SALSAMYTKCG 470

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
            LD  + +   M  R      V  W A++S     G          KALEL
Sbjct: 471 SLDDGYLIFWRMPSR-----DVISWNAMISGLSQNGH-------GNKALEL 509



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 166/379 (43%), Gaps = 53/379 (13%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI- 147
           L   L   T  K+   G+ + A + K+G +SS++V +  ++LYAK   +  A  +FD I 
Sbjct: 14  LLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSIN 73

Query: 148 -PVKNSVCANALLSGYCE-----AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
              K+ V  N+L++ + +     +  +A  L   R+M A  +  +  TL+ +  A + LS
Sbjct: 74  DNDKDDVSWNSLINAFSQNHSSSSSSFAISL-FRRMMRANNVIPNAHTLAGVFSAASNLS 132

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
               G+Q H+  ++  C+   DV++ SSL+ MY K G V  A ++F+    R       +
Sbjct: 133 DVVAGKQAHSVAVKTGCS--GDVYVGSSLLNMYCKTGFVFDARKLFDRMPER-------N 183

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HT 310
            V W +M+  Y  +    + ++++E M       +E A  +V+SA +           H+
Sbjct: 184 TVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHS 243

Query: 311 GQVKLGIEYFEWMVH-------------------DYKLEPGPEHYSCLVDLLCRAGELDK 351
             +K G+     + +                   ++  +     +S +V    + G+ DK
Sbjct: 244 LAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDK 303

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
           A KL N+M   G   S  ++ G +++AC D      GK     A +L     G  + L  
Sbjct: 304 ALKLFNKMHSSGVLPSEFTLVG-VINACSDLCAVVEGKQMHSFAFKL-----GFGLQLYV 357

Query: 412 LYAKFCMWDEIGQLRELMK 430
           L A   M+ + G L +  K
Sbjct: 358 LSAVVDMYAKCGSLADARK 376


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 214/394 (54%), Gaps = 12/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I  + ++  P  +L  +  M   G+  D + +CS L+A + +K  + GK+V   + 
Sbjct: 462 WNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLII 521

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           ++      FV  +L+ LY     +  A ++FD +  K  V  N +++GY +       L 
Sbjct: 522 RNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALS 581

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R M   G+     ++ ++  AC+ L +   GR+ H Y ++  C L ++ F+  S+I+M
Sbjct: 582 LFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALK--CLLEDNAFIACSVIDM 639

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G V ++ +VFN       G   + V  W +M+  YG +G  KE IKL+E M   G 
Sbjct: 640 YAKNGSVMESFKVFN-------GLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGH 692

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            PDE+ F+ V++AC+H+G V  G+ Y + M   + + P  +HY+C++D+L RAG+LD+A 
Sbjct: 693 CPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEAL 752

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           K+  E +    G   V +W  LLS+C      E+G+  A K    +P     YV+LSNLY
Sbjct: 753 KIATEEMSEEPG---VGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLY 809

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A    WDE+ ++R+ MKE  L+KD GCSWIE+ G
Sbjct: 810 AGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNG 843



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 131/259 (50%), Gaps = 23/259 (8%)

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            V +A +  YAK   +  A  +F  I  K     NAL+ GY ++      L+    M + 
Sbjct: 429 LVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSS 488

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           GL  D FT+ +LL AC+ + + + G++VH  +IR    L  D F+  SL+ +Y  CG ++
Sbjct: 489 GLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRN--RLERDSFVYISLLSLYIHCGELS 546

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A  +F+          +K +V W +M+  Y +NG+ +  + L+  M++ G +P E++ +
Sbjct: 547 TAHVLFDAME-------DKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMM 599

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLLCRAGELDKAWKLIN 357
           +V  ACS    ++LG E      H Y L+   E  +     ++D+  + G + +++K+ N
Sbjct: 600 SVFGACSLLPSLRLGRE-----AHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFN 654

Query: 358 EMLDRGHGSSSVSMWGALL 376
            + +R     SV+ W A++
Sbjct: 655 GLKER-----SVASWNAMV 668



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 129/294 (43%), Gaps = 19/294 (6%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           +R++  Y+ C    +  ++ + L+    +N   +N VIS + RN      L+ F  M   
Sbjct: 121 TRVITMYSMCGSPDDSRSVFDALR---KKNLFQWNAVISSYSRNELYHNVLEMFVKMITE 177

Query: 81  -GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
            G+  D +     + A   V + + G  V   V K+  +  VFV +AL+  Y     + D
Sbjct: 178 SGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSD 237

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM----PALGLDYDHFTLSALLR 195
           A  +F  +P +N V  N+++  + +  L      L+  M      +    D  TL+ +L 
Sbjct: 238 ALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLP 297

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
            CA       G+ VH   ++   +L  +V + ++L++MY KCG +  A  +F L      
Sbjct: 298 VCARDREIGVGKGVHGLAMK--LSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNN---- 351

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKPDEVAFVTVISAC 307
              NK+VV W +M+G +   G   +   L   ML  G   + DEV  +  +  C
Sbjct: 352 ---NKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 146/335 (43%), Gaps = 18/335 (5%)

Query: 37  GTLTNCL---KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH----GIFLDTYAL 89
           G++++ L   K +  RN + +N +I  F  NG           M           D   L
Sbjct: 233 GSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATL 292

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
            + L      ++   GK V     K      V V +AL+D+Y+K   I+DA+++F     
Sbjct: 293 ATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNN 352

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAEFGR 207
           KN V  N ++ G+  A       +L+R M A G D   D  T+   +  C   S     +
Sbjct: 353 KNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLK 412

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           ++H Y +++   + N+  + ++ +  Y KCG ++ A +VF           +K V  W +
Sbjct: 413 ELHCYSLKQEF-VHNNELVANAFVASYAKCGSLSYAHRVFCSIR-------SKTVNSWNA 464

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           ++G Y ++   +  +  Y  M  +G  PD     +++SACS    +KLG E    ++ + 
Sbjct: 465 LIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRN- 523

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           +LE     Y  L+ L    GEL  A  L + M D+
Sbjct: 524 RLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDK 558



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           + GR++H  ++ +   L ND  + + +I MY  CG    +  VF+           K++ 
Sbjct: 98  QLGRKIHQ-LVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALR-------KKNLF 149

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKPDEVAFVTVISACSHTGQVKLGI 317
            W +++  Y RN  +  V++++  M+  +G  PD   F  V+ AC+   +V++G+
Sbjct: 150 QWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGL 204



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 68/146 (46%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +++ + +NG P  AL  F  M ++G+     ++ S   A + +   R G++   +
Sbjct: 561 VSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGY 620

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
             K     + F+  ++ID+YAK   + ++  +F+ +  ++    NA++ GY         
Sbjct: 621 ALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEA 680

Query: 172 LELVRLMPALGLDYDHFTLSALLRAC 197
           ++L   M   G   D  T   +L AC
Sbjct: 681 IKLFEEMQRTGHCPDELTFLGVLTAC 706


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 224/403 (55%), Gaps = 13/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
              L  ++ + +N +IS + +    + AL  F  MH  GI  +   L + L ++  ++  
Sbjct: 390 FNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVV 449

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
              +QV     KSG+ S ++V ++LID Y K   + DAE +F+E  + + V   ++++ Y
Sbjct: 450 HVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAY 509

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       L+L   M  + L  D F  S+LL ACA LSA E G+Q+H ++++    L  
Sbjct: 510 AQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVL-- 567

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D+F  +SL+ MY KCG +  A + F+    R        +V W++M+G   ++G+ ++ +
Sbjct: 568 DIFAGNSLVNMYAKCGSIDDAGRAFSELTER-------GIVSWSAMIGGLAQHGHGRQAL 620

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L+  ML  G  P+ +  V+V+ AC+H G V     YFE M   +  +P  EHY+C++DL
Sbjct: 621 QLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDL 680

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG++++A +L+N+M       ++ S+WGALL A       ELG+ AA+    L+P  
Sbjct: 681 LGRAGKINEAVELVNKM----PFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEK 736

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G +V+L+N+YA    W+ + ++R LM++  +KK+ G SWIEV
Sbjct: 737 SGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEV 779



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 137/272 (50%), Gaps = 18/272 (6%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HAH  ++GL     I  ++ L+  Y+ CR     G     +   +  + + ++ +IS 
Sbjct: 77  QIHAHITKSGLSDDPSI--RNHLINLYSKCR---XFGYARKLVDESSEPDLVSWSALISG 131

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +NG    AL  F  MH+ G+  + +   S L A + VKD R GKQV   V  SG+   
Sbjct: 132 YAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGD 191

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           VFV + L+ +YAK     D++ +FDEIP +N V  NAL S Y +       + L   M  
Sbjct: 192 VFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVL 251

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN--DVFMQSSLIEMYGKCG 238
            G+  + F+LS+++ AC GL  +  G+ +H Y+I+    LG   D F  ++L++MY K G
Sbjct: 252 SGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK----LGYDWDPFSANALVDMYAKVG 307

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            +  A+ VF       E     D+V W +++ 
Sbjct: 308 DLADAISVF-------EKIKQPDIVSWNAVIA 332



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 170/355 (47%), Gaps = 32/355 (9%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L+   + K  R G Q+ AH+TKSG      + + LI+LY+K      A  + DE    + 
Sbjct: 63  LSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDL 122

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  +AL+SGY +  L  G L     M  LG+  + FT S++L+AC+ +     G+QVH  
Sbjct: 123 VSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGV 182

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           ++        DVF+ ++L+ MY KC     + ++F+    R       +VV W ++   Y
Sbjct: 183 VV--VSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPER-------NVVSWNALFSCY 233

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            +  +  E + L+  M+++G KP+E +  ++++AC+       G      ++H Y ++ G
Sbjct: 234 VQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGK-----IIHGYLIKLG 288

Query: 333 ----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC-----HDCG 383
               P   + LVD+  + G+L  A  +  ++         +  W A+++ C     H+  
Sbjct: 289 YDWDPFSANALVDMYAKVGDLADAISVFEKI-----KQPDIVSWNAVIAGCVLHEHHEQA 343

Query: 384 KFELGKLAAQ---KALELD-PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
              LG++  Q     +++D   ++ + V L ++Y+K  + ++      L+ EK L
Sbjct: 344 LELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 398



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 141/277 (50%), Gaps = 19/277 (6%)

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
            +  +Q+ + + K    S +FV   L+D+Y+K  L+ DA + F+ +P K+ +  NA++SG
Sbjct: 348 GQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISG 407

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           Y +       L L   M   G+ ++  TLS +L++ AGL      RQVH   ++      
Sbjct: 408 YSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKS--GFH 465

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           +D+++ +SLI+ YGKC  V  A ++F       E  I  D+V +TSM+  Y + G  +E 
Sbjct: 466 SDIYVVNSLIDSYGKCSHVEDAERIFE------ECTIG-DLVSFTSMITAYAQYGQGEEA 518

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS--CL 339
           +KL+  M     KPD     ++++AC++    + G +     VH  K     + ++   L
Sbjct: 519 LKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLH---VHILKYGFVLDIFAGNSL 575

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           V++  + G +D A +  +E+ +RG     +  W A++
Sbjct: 576 VNMYAKCGSIDDAGRAFSELTERG-----IVSWSAMI 607


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 143/447 (31%), Positives = 237/447 (53%), Gaps = 18/447 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           ++H H  + G      +   + L+  Y  C     LG        +  R+ + +N +I  
Sbjct: 45  SIHVHALKLGFE--SYLFVSNALIHMYAMC---GQLGFAQKMFDGMLDRDLVSWNTLICG 99

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +       L+ F  M    I  D   +   + A + + D  F   +  ++ ++     
Sbjct: 100 YSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEID 159

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           V++G+ LID+Y +L  +  A  +FD +P ++ +   ++++GY +A  ++  ++L + M A
Sbjct: 160 VYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMA 219

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             +  D  T++++L ACA L   + G  VH Y+ R    +  D+++ +SLI+MY KCG+V
Sbjct: 220 AKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRH--GVQADIYVGNSLIDMYCKCGMV 277

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            KAL+VF    HR++   +KD V WTS++     NG+    + L+  ML  G +P    F
Sbjct: 278 EKALEVF----HRMK---DKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTF 330

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V ++ AC+H G V  G+EYFE M   + L P  +HY C+VDLL R+G +DKA++ I +M 
Sbjct: 331 VGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKM- 389

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
                   V +W  LLSAC   G   L ++A ++ LELDP + G YV+LSN YA    WD
Sbjct: 390 ---PIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWD 446

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +  ++RELM++  ++K  G S IEV G
Sbjct: 447 DAMKMRELMEDSDVQKPSGSSSIEVDG 473



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 155/294 (52%), Gaps = 25/294 (8%)

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           AL  +LT  T++  +     +  H  K G+ S +FV +ALI +YA    +  A+ MFD +
Sbjct: 28  ALVVALT--TNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGM 85

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
             ++ V  N L+ GY +   +   L L   M A  +  D  T+  ++ AC+ L   EF  
Sbjct: 86  LDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFAD 145

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
            +  Y+  K  NL  DV++ ++LI+MYG+ G +T A ++F+    R       DV+ WTS
Sbjct: 146 SMVKYI--KENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKR-------DVISWTS 196

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           M+  Y +   F + +KL++ M+    KPD+V   +V+SAC+H G++ +G     W VH Y
Sbjct: 197 MITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVG-----WAVHHY 251

Query: 328 KLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
               G +      + L+D+ C+ G ++KA ++ + M D+     SVS W +++S
Sbjct: 252 IRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDK----DSVS-WTSVIS 300


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/400 (34%), Positives = 218/400 (54%), Gaps = 22/400 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N V+++   +G PL  ++ +  +   G   +  + C+   A         G+Q 
Sbjct: 76  RNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQF 135

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC----E 164
              V K G+   V V ++++D Y K      A  +FD + V+NSV   ++++ Y     E
Sbjct: 136 HGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAE 195

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            + +A  L   R     G +   F +S+ L  CAGL     GR +HA  +R C +   ++
Sbjct: 196 EEAFAAYLGARRS----GEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDA--NI 249

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ S+L++MYGKCG V  A Q+F     R       ++V W +M+G Y   G  +  + +
Sbjct: 250 FVASALVDMYGKCGCVEDAEQIFYETPQR-------NLVTWNAMIGGYAHIGDAQNALLV 302

Query: 285 YEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           ++ M+ +G T P+ +  V VI++CS  G  K G E FE M   + +EP  EHY+C+VDLL
Sbjct: 303 FDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLL 362

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            RAG  ++A+++I  M  R     S+S+WGALL AC   GK ELG++AA+K  ELDP + 
Sbjct: 363 GRAGMEEQAYEVIQGMPMR----PSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDS 418

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           G +V+LSN++A    W E   +R+ MK  G+KKD GCSW+
Sbjct: 419 GNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWV 458



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 133/302 (44%), Gaps = 25/302 (8%)

Query: 81  GIFLDTYALCSSLTASTSVKD-ARFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIH 138
           G+  + +   S+  A+ S    +  G Q+ +   + G+L    FV  A +D+Y K   + 
Sbjct: 5   GLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLK 64

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR----LMPALGLDYDHFTLSALL 194
            A  +F E+P +N V  NA+++    A L    LE +     L  A GL  +  +  A  
Sbjct: 65  LARHLFGEMPNRNVVAWNAVMT---NAVLDGRPLETIEAYFGLREAGGLP-NVVSACAFF 120

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            ACAG      G Q H ++++  C    DV + +S+++ YGKC    KA  VF+  G R 
Sbjct: 121 NACAGAMYLSLGEQFHGFVVK--CGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVR- 177

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                 + V W SM+  Y +NG  +E    Y     +G +P +    + ++ C+    + 
Sbjct: 178 ------NSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLH 231

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
           LG       V    ++      S LVD+  + G ++ A ++  E   R     ++  W A
Sbjct: 232 LGRALHAVAVRSC-IDANIFVASALVDMYGKCGCVEDAEQIFYETPQR-----NLVTWNA 285

Query: 375 LL 376
           ++
Sbjct: 286 MI 287


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 130/400 (32%), Positives = 219/400 (54%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+ + +  +I+   + G    A++ F  M    +  + Y   + ++   ++    +G
Sbjct: 278 MSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWG 337

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ A +   G  +S+ V ++++ +YAK   +  + ++F E+  ++ V  + +++GY + 
Sbjct: 338 EQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQG 397

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              +   EL+  M   G     F L+++L AC  ++  E G+Q+HAY++     L +   
Sbjct: 398 GHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVL--SIGLEHTAM 455

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+LI MY KCG + +A ++F+ A        N D+V WT+M+  Y  +GY +EVI L+
Sbjct: 456 VLSALINMYCKCGSIEEASRIFDAAE-------NDDIVSWTAMINGYAEHGYSREVIDLF 508

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E +   G +PD V F+ V+SACSH G V LG  YF  M   Y++ P  EHY C++DLLCR
Sbjct: 509 EKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCR 568

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L  A  +I  M    H    V  W  LL AC   G  E G+  A++ L+L+P+  G 
Sbjct: 569 AGRLSDAEHMIEAM--PFHRDDVV--WSTLLRACRVHGDVERGRRTAERILQLEPNCAGT 624

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           ++ L+N+YA    W E   +R+LMK KG+ K+ G SWI+V
Sbjct: 625 HITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKV 664



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 169/352 (48%), Gaps = 16/352 (4%)

Query: 17  IIFQSRLMLPYTTCRHKK-----NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYAL 71
           I F S+  LP +  + K+     +LG        ++ ++ + +  +IS +        AL
Sbjct: 41  IHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEAL 100

Query: 72  KTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL 130
             F  M V  G+ +D + L  +  A     D  +G+ +  +  K+G ++SVFVGSAL+D+
Sbjct: 101 LLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDM 160

Query: 131 YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
           Y K   I +   +F E+P++N V   A+++G   A      L     M    ++YD +T 
Sbjct: 161 YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTF 220

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           +  L+ACA   A  +GR++HA  ++K  ++ +  F+ ++L  MY KCG +   L +F   
Sbjct: 221 AIALKACADSGALNYGREIHAQAMKKGFDVSS--FVANTLATMYNKCGKLEYGLTLFEKM 278

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
             R       DVV WT+++    + G  +  ++ +  M  +   P+E  F  VIS C++ 
Sbjct: 279 SMR-------DVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANL 331

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
            +++ G +    ++H   L       + ++ +  + G+L  +  + +EM  R
Sbjct: 332 ARIEWGEQLHALILH-LGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRR 382


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/400 (34%), Positives = 218/400 (54%), Gaps = 22/400 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N V+++   +G PL  ++ +  +   G   +  + C+   A         G+Q 
Sbjct: 183 RNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQF 242

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC----E 164
              V K G+   V V ++++D Y K      A  +FD + V+NSV   ++++ Y     E
Sbjct: 243 HGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAE 302

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            + +A  L   R     G +   F +S+ L  CAGL     GR +HA  +R C +   ++
Sbjct: 303 EEAFAAYLGARRS----GEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDA--NI 356

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ S+L++MYGKCG V  A Q+F     R       ++V W +M+G Y   G  +  + +
Sbjct: 357 FVASALVDMYGKCGCVEDAEQIFYETPQR-------NLVTWNAMIGGYAHIGDAQNALLV 409

Query: 285 YEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           ++ M+ +G T P+ +  V VI++CS  G  K G E FE M   + +EP  EHY+C+VDLL
Sbjct: 410 FDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLL 469

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            RAG  ++A+++I  M  R     S+S+WGALL AC   GK ELG++AA+K  ELDP + 
Sbjct: 470 GRAGMEEQAYEVIQGMPMR----PSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDS 525

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           G +V+LSN++A    W E   +R+ MK  G+KKD GCSW+
Sbjct: 526 GNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWV 565



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 146/329 (44%), Gaps = 25/329 (7%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKD-ARFGKQVQAHV 112
           +   IS   ++G PL AL  F+ M   G+  + +   S+  A+ S    +  G Q+ +  
Sbjct: 85  YTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLA 144

Query: 113 TKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
            + G+L    FV  A +D+Y K   +  A  +F E+P +N V  NA+++    A L    
Sbjct: 145 IRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMT---NAVLDGRP 201

Query: 172 LELVR----LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           LE +     L  A GL  +  +  A   ACAG      G Q H ++++  C    DV + 
Sbjct: 202 LETIEAYFGLREAGGLP-NVVSACAFFNACAGAMYLSLGEQFHGFVVK--CGFEMDVSVL 258

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +S+++ YGKC    KA  VF+  G R       + V W SM+  Y +NG  +E    Y  
Sbjct: 259 NSMVDFYGKCRCAGKARAVFDGMGVR-------NSVSWCSMVAAYAQNGAEEEAFAAYLG 311

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
              +G +P +    + ++ C+    + LG       V    ++      S LVD+  + G
Sbjct: 312 ARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSC-IDANIFVASALVDMYGKCG 370

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            ++ A ++  E   R     ++  W A++
Sbjct: 371 CVEDAEQIFYETPQR-----NLVTWNAMI 394



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 12/243 (4%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTK-SGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           D   L ++  ++ + +  R G+   A   +      S F+ + L++LY+KL L   A   
Sbjct: 14  DPQLLAAAFESAIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAA 73

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA- 202
               P    V   A +SG  +       L     M  LGL  + FT  +  +A A     
Sbjct: 74  LASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPR 133

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKD 261
           +  G Q+H+  IR    L  D F+  + ++MY K G +  A  +F        GE+ N++
Sbjct: 134 STIGPQIHSLAIR-FGYLPVDPFVSCAALDMYFKTGRLKLARHLF--------GEMPNRN 184

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           VV W +++     +G   E I+ Y  +   G  P+ V+     +AC+    + LG ++  
Sbjct: 185 VVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHG 244

Query: 322 WMV 324
           ++V
Sbjct: 245 FVV 247


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 138/406 (33%), Positives = 233/406 (57%), Gaps = 29/406 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I+ + +N  P  AL+ F  M + GI  D   + S  +  + + D R  + +
Sbjct: 286 RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSI 345

Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
              V +  WL   V +G+AL+++YAKL  ++ A  +FD++P K+++  N L++GY +  L
Sbjct: 346 LGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGL 405

Query: 168 WAGGLELVRLM-------PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            +  ++   +M       P  G      T  +++ A + + A + G ++HA +I+    L
Sbjct: 406 ASEAIDAYNMMEECRDTIPNQG------TWVSIIPAYSHVGALQQGMKIHAKLIKNSLYL 459

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV-VLWTSMLGVYGRNGYFK 279
             DVF+ + LI++YGKCG +  A+ +F         EI +D  V W +++   G +G  +
Sbjct: 460 --DVFVATCLIDLYGKCGRLEDAMSLFY--------EIPRDTSVPWNAIIASLGIHGRGE 509

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E ++L++ ML    K D + FV+++SACSH+G V  G + F+ M  +Y ++P  +HY C+
Sbjct: 510 EALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCM 569

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL RAG L+KA++L+  M  +       S+WGALLSAC   G  ELG LA+ + LE+D
Sbjct: 570 VDLLGRAGYLEKAYELVRNMPIQ----PDASIWGALLSACKIYGNAELGTLASDRLLEVD 625

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             NVG YV+LSN+YA    W+ + ++R L +++GL+K  G S + V
Sbjct: 626 SENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVV 671



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 165/334 (49%), Gaps = 15/334 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS FC+NG+   AL   + M   G+ +DT  + S L       D   G  +  HV 
Sbjct: 190 WNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL 249

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G  S VFV +ALI++Y+K   + DA+++FD++ V++ V  N++++ Y +    +  L 
Sbjct: 250 KHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALR 309

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
             + M   G+  D  T+ +L    + LS     R +  ++IR+   L  DV + ++L+ M
Sbjct: 310 FFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW-LDKDVVIGNALVNM 368

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NG 292
           Y K G +  A  VF+           KD + W +++  Y +NG   E I  Y  M     
Sbjct: 369 YAKLGYMNCAHTVFDQLPR-------KDTISWNTLVTGYTQNGLASEAIDAYNMMEECRD 421

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
           T P++  +V++I A SH G ++ G++    ++ +  L       +CL+DL  + G L+ A
Sbjct: 422 TIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLEDA 480

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
             L  E+       +SV  W A++++    G+ E
Sbjct: 481 MSLFYEI----PRDTSVP-WNAIIASLGIHGRGE 509



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 179/367 (48%), Gaps = 23/367 (6%)

Query: 1   NVHAHQFETGLLLIC----LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNV 56
           NV+A +    LLL+      I+  ++L+  Y T     ++    +   +++ +N   +N 
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVT---HGDISLSRSTFDYIHKKNIFSWNS 90

Query: 57  VISDFCRNGSPLYAL----KTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +IS + R G    A+    + FS      +  D Y     L A  S+ D   GK+V   V
Sbjct: 91  IISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCV 147

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
            K G+   VFV ++L+ LY++  ++  A  +F ++PVK+    NA++SG+C+    AG L
Sbjct: 148 FKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGAL 207

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
            ++  M   G+  D  T++++L  CA       G  +H ++++    L +DVF+ ++LI 
Sbjct: 208 GVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKH--GLDSDVFVSNALIN 265

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY K G +  A  VF+      + E+ +D+V W S++  Y +N      ++ ++ M + G
Sbjct: 266 MYSKFGRLQDAQMVFD------QMEV-RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGG 318

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            +PD +  V++ S  S     ++      +++    L+      + LV++  + G ++ A
Sbjct: 319 IRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCA 378

Query: 353 WKLINEM 359
             + +++
Sbjct: 379 HTVFDQL 385


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 223/402 (55%), Gaps = 13/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +N ++   +N VI    +NG P+ AL  +  M   GI  D +++ S L A   +   ++G
Sbjct: 477 MNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   V ++G   + FV  +L+ LY            F+ +  KNSVC NA+LSGY + 
Sbjct: 537 KEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQN 596

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +L    L L R M + GL+ D   ++++L AC+ LSA   G++VH + ++   +L  D F
Sbjct: 597 ELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKN--SLMEDNF 654

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +  SL++MY K G +  + ++FN    RL G   K+V  W  M+  +G +G   + ++L+
Sbjct: 655 VACSLMDMYAKSGFLGHSQRIFN----RLNG---KEVASWNVMITGFGVHGQGNKAVELF 707

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M  +  +PD   F+ V+ AC H G V  G+ Y   M   YKLEP  EHY+C++D+L R
Sbjct: 708 EDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGR 767

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L++A   INEM +         +W +LLS+       E+G+  A+K L L+ +    
Sbjct: 768 AGRLNEALNFINEMPEE----PDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADS 823

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           Y++LSNLYA    WD +  +R+ MK+  L+KDVGCSWIE+ G
Sbjct: 824 YILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRG 865



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-S 75
            +  +RL+  Y+ C +      + +  + LN +N   +N ++S + RN     A+ TF  
Sbjct: 143 FVLNTRLITMYSICGYPLESRLVFD--RLLN-KNLFQWNALVSGYVRNELYDEAIHTFLE 199

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            + V     D +     + A T   D   GK V     K G +  +FVG+A+I LY K  
Sbjct: 200 LISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCG 259

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR--LMPALGLDYDHFTLSAL 193
            + +A  +FD++P +N +  N+L+ G+ E   W       R  L    GL  D  T+  L
Sbjct: 260 FLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTL 319

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L  C+G    + G  +H   ++    L +++ + ++LI+MY KCG +++A  +F     +
Sbjct: 320 LPVCSGEGNVDVGMVIHGMAVK--LGLVHELMVCNALIDMYSKCGCLSEAAILF----RK 373

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT--KPDEVAFVTVISAC 307
           +E   NK VV W SM+G Y R G+  E   L   M M     + +EV  + ++ AC
Sbjct: 374 IE---NKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 18/293 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +N + +N +I  F  NG  L A + F  +     G+  D   + + L   +   +   G 
Sbjct: 274 QNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM 333

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +     K G +  + V +ALID+Y+K   + +A ++F +I  K+ V  N+++  Y    
Sbjct: 334 VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREG 393

Query: 167 LWAGGLELVR--LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                 +L+R   M    ++ +  T+  LL AC   S     R +H Y +R   +     
Sbjct: 394 FVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRH--SFQYKE 451

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + ++ I  Y KCG +  A  VF        G   K V  W +++G + +NG   + +  
Sbjct: 452 LINNAFIAAYAKCGSLVFAEHVFF-------GMNTKSVSSWNAVIGGHAQNGDPIKALDF 504

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
           Y  M   G  PD+ + V+++ AC   G ++ G E     +H + L  G E  S
Sbjct: 505 YFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKE-----IHGFVLRNGLEMNS 552



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 27/234 (11%)

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMI 214
           +S  CEA    G L+ ++        YD       +  LL+ C      E GR++   M+
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDE-ML 133

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
                   D  + + LI MY  CG   ++  VF+    RL   +NK++  W +++  Y R
Sbjct: 134 CVSSQFSGDFVLNTRLITMYSICGYPLESRLVFD----RL---LNKNLFQWNALVSGYVR 186

Query: 275 NGYFKEVIKLY-EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           N  + E I  + E + +   +PD   F  +I AC+    + LG       VH   ++ G 
Sbjct: 187 NELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKS-----VHGMAVKMGL 241

Query: 334 EHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
                  + ++ L  + G LD+A +L ++M ++     ++  W +L+    + G
Sbjct: 242 IMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQ-----NLISWNSLIRGFSENG 290


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 143/397 (36%), Positives = 213/397 (53%), Gaps = 15/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN   +N  +S+    G    AL  F      G   +    C+ L A       R G+Q+
Sbjct: 172 RNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQL 231

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V +SG+ + V V + LID Y K   +  +E++F  I   N V   +++  Y +    
Sbjct: 232 HGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEE 291

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                +       G++   F +S++L ACAGLS  E G+ VH   + K C +GN +F+ S
Sbjct: 292 EKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAV-KACVVGN-IFVGS 349

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MYGKCG +  A + F+    R       ++V W +M+G Y   G     + L++ M
Sbjct: 350 ALVDMYGKCGSIEDAERAFDEMPER-------NLVTWNAMIGGYAHQGQADMAVTLFDEM 402

Query: 289 LMNGTK--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
                +  P+ V FV V+SACS  G V +G+E FE M   Y +EPG EHY+C+VDLL RA
Sbjct: 403 TCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRA 462

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G +++A++ I +M  R     +VS+WGALL A    GK ELGK+AA    ELDP + G +
Sbjct: 463 GMVEQAYQFIKKMPIR----PTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNH 518

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           V+LSN++A    W+E   +R+ MK+ G+KK  GCSWI
Sbjct: 519 VLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWI 555



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 158/348 (45%), Gaps = 24/348 (6%)

Query: 46  LNP-RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           L P R+ + +  +I+   +NG    AL  FS M    I  + +    +  AS S++    
Sbjct: 67  LTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLV 126

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GKQV A   K+G +S VFVG +  D+Y+K  L  +A  MFDE+P +N    NA LS    
Sbjct: 127 GKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVL 186

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
              +   L         G + +  T  A L ACAG S    GRQ+H ++++       DV
Sbjct: 187 EGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQS--GFEADV 244

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + + LI+ YGKC  V  +  +F+       G    + V W SM+  Y +N   ++   +
Sbjct: 245 SVANGLIDFYGKCHQVGCSEIIFS-------GISKPNDVSWCSMIVSYVQNDEEEKACLV 297

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLV 340
           +      G +P +    +V+SAC+    +++G       VH   ++          S LV
Sbjct: 298 FLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKS-----VHTLAVKACVVGNIFVGSALV 352

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           D+  + G ++ A +  +EM +R     ++  W A++      G+ ++ 
Sbjct: 353 DMYGKCGSIEDAERAFDEMPER-----NLVTWNAMIGGYAHQGQADMA 395



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 26/195 (13%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV--FMQSSLIEMYGKCGLVTKALQV 246
           +L++L+ +      +  GR  HA +I+    L N +  F+ + L+ MY K      A  +
Sbjct: 8   SLASLVESAVSTQCSRLGRAAHAQIIK---TLDNPLPSFIYNHLVNMYSKLDRPNSAQLL 64

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
            +L         N+ VV WT+++    +NG F   +  +  M  +  +P++  F     A
Sbjct: 65  LSLTP-------NRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKA 117

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGP---EHYSC-LVDLLCRAGELDKAWKLINEMLDR 362
                   +G +     VH   ++ G        C   D+  +AG  ++A K+ +EM +R
Sbjct: 118 SGSLRSPLVGKQ-----VHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPER 172

Query: 363 GHGSSSVSMWGALLS 377
                +++ W A LS
Sbjct: 173 -----NIATWNAYLS 182


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/412 (33%), Positives = 220/412 (53%), Gaps = 14/412 (3%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G + N  K  +    ++ + +N +IS +   G+   AL+ F  M    +  D   + + +
Sbjct: 171 GYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 230

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           +A         G+QV + +   G+ S++ + +ALIDLY+K   +  A  +F+ +P K+ +
Sbjct: 231 SACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVI 290

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N L+ GY    L+   L L + M   G   +  T+ ++L ACA L A + GR +H Y+
Sbjct: 291 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 350

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
            ++   + N   +++SLI+MY KCG +  A QVFN   H       K +  W +M+  + 
Sbjct: 351 DKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILH-------KSLSSWNAMIFGFA 403

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +G       ++  M  NG +PD++ FV ++SACSH+G + LG   F  M  DYK+ P  
Sbjct: 404 MHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKL 463

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHY C++DLL  +G   +A ++IN M     G     +W +LL AC   G  ELG+  AQ
Sbjct: 464 EHYGCMIDLLGHSGLFKEAEEMINTMEMEPDG----VIWCSLLKACKMHGNVELGESFAQ 519

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             ++++P N G YV+LSN+YA    W+E+   R L+ +KG+KK  GCS IE+
Sbjct: 520 NLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEI 571



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 193/412 (46%), Gaps = 58/412 (14%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA   +TGL      +  S+L+       H   L    +  + +   N L +N +    
Sbjct: 9   IHAQMIKTGLHNTNYAL--SKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 66

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +  P+ ALK +  M   G+  ++Y     L +    K  + G+Q+  HV K G    +
Sbjct: 67  ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDL 126

Query: 122 FVGSALIDLY-------------------------------AKLLLIHDAELMFDEIPVK 150
           +V ++LI +Y                               A    I +A+ MFDEIPVK
Sbjct: 127 YVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVK 186

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V  NA++SGY E   +   LEL + M    +  D  T+  ++ ACA   + E GRQVH
Sbjct: 187 DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVH 246

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           +++       G+++ + ++LI++Y KCG +  A  +F       EG   KDV+ W +++G
Sbjct: 247 SWIDDH--GFGSNLKIVNALIDLYSKCGELETACGLF-------EGLPYKDVISWNTLIG 297

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--K 328
            Y     +KE + L++ ML +G  P++V  ++++ AC+H G + +G     W +H Y  K
Sbjct: 298 GYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG----RW-IHVYIDK 352

Query: 329 LEPGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
              G  + S     L+D+  + G+++ A ++ N +L +     S+S W A++
Sbjct: 353 RLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHK-----SLSSWNAMI 399


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/399 (36%), Positives = 216/399 (54%), Gaps = 14/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I    ++   + A+  F  M   G+ +D + + S LTA T VKD   G+Q 
Sbjct: 206 RDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQF 265

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLL-LIHDAELMFDEIPVKNSVCANALLSGYC-EAK 166
              + KSG+  +  VGS LIDLY+K    + +   +F+EI   + V  N ++SG+     
Sbjct: 266 HGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYED 325

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L   GL   R M   G   D  +   +  AC+ LS+   G+QVHA  I+      N V +
Sbjct: 326 LSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPY-NRVSV 384

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L+ MY KCG V  A +VF+            + V   SM+  Y ++G   E ++L+E
Sbjct: 385 NNALVAMYSKCGNVHDARRVFDTMPEH-------NTVSLNSMIAGYAQHGVEVESLRLFE 437

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML     P+ + F+ V+SAC HTG+V+ G +YF  M   + +EP  EHYSC++DLL RA
Sbjct: 438 LMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRA 497

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G+L +A ++I E +    GS     W  LL AC   G  EL   AA + L L+P+N   Y
Sbjct: 498 GKLKEAERII-ETMPFNPGSIE---WATLLGACRKHGNVELAVKAANEFLRLEPYNAAPY 553

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           VMLSN+YA    W+E   ++ LM+E+G+KK  GCSWIE+
Sbjct: 554 VMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEI 592



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 129/275 (46%), Gaps = 22/275 (8%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q   H+T+     +VF  + LI+ YAK  LIH A  +FDEIP  + V  N L++ Y +  
Sbjct: 64  QTSFHLTQ---YPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRG 120

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF- 225
                L L   +  L L  D FTLS ++ AC         RQ+H +++   C  G+D + 
Sbjct: 121 ECGPTLRLFEEVRELRLGLDGFTLSGVITACG--DDVGLVRQLHCFVV--VC--GHDCYA 174

Query: 226 -MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + ++++  Y + G +++A +VF   G   EG   +D V W +M+   G++    E + L
Sbjct: 175 SVNNAVLACYSRKGFLSEARRVFREMG---EGG-GRDEVSWNAMIVACGQHREGMEAVGL 230

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M+  G K D     +V++A +    + +G   F  M+            S L+DL  
Sbjct: 231 FREMVRRGLKVDMFTMASVLTAFTCVKDL-VGGRQFHGMMIKSGFHGNSHVGSGLIDLYS 289

Query: 345 R-AGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + AG + +  K+  E+      +  + +W  ++S 
Sbjct: 290 KCAGSMVECRKVFEEIT-----APDLVLWNTMISG 319


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/413 (33%), Positives = 226/413 (54%), Gaps = 19/413 (4%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
            T+ + L   N    +  + +  +I+ F   G     L  F  M +  +  ++++   + 
Sbjct: 159 ATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAA 218

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A  S+     GKQ+ A VTK G      V ++++D+Y +   + DA+  F E+  KN +
Sbjct: 219 RACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLI 278

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N L++GY E    +  L L   M + G   + FT +++  ACA L+    G+QVH  +
Sbjct: 279 TWNTLIAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGI 337

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVY 272
           +R+      +V + +SLI+MY KCG ++ + ++F ++ G        +D+V WT+M+  Y
Sbjct: 338 VRR--GFDKNVALINSLIDMYAKCGSISDSHKLFCDMPG--------RDLVSWTTMMIGY 387

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           G +GY KE +KL++ M+ +G +PD + F+ V+  CSH G V  G++YF  M+ DY + P 
Sbjct: 388 GAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPD 447

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
            E Y C+VDLL RAG +++A++L+  M          S+WGALL AC       LG LAA
Sbjct: 448 QEIYRCVVDLLGRAGRVEEAFQLVENM----PFEPDESVWGALLGACKAYKLSNLGNLAA 503

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Q+ L+  P+  G Y++LS +YA    W E  ++R+LMK    KK+VG SWIE+
Sbjct: 504 QRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEI 556



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 152/335 (45%), Gaps = 14/335 (4%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N    +  R+ + +  +I  F        A   FS M    +  + + + S L A   +K
Sbjct: 64  NLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMK 123

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYA-KLLLIHDAELMFDEIPVKNSVCANALL 159
               G    +  TK G   SV+V +AL+D+YA     + DA  +F++IP+K +V    L+
Sbjct: 124 ALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLI 183

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           +G+        GL   R M    +  + F+ S   RACA +S+   G+Q+HA + +    
Sbjct: 184 AGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKY--G 241

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYF 278
           L  D  + +S+++MY +C  +  A + F        GE+  K+++ W +++  Y R+   
Sbjct: 242 LHCDAPVMNSILDMYCRCNYLCDAKRCF--------GELTEKNLITWNTLIAGYERSDS- 292

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
            E + L+  M   G KP+   F ++ +AC++   +  G +    +V     +      + 
Sbjct: 293 SESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVR-RGFDKNVALINS 351

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           L+D+  + G +  + KL  +M  R   S +  M G
Sbjct: 352 LIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIG 386


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 140/402 (34%), Positives = 223/402 (55%), Gaps = 19/402 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY---ALCSSLTASTSVKDA 102
           ++ RN + FN +I+ +   G    AL+ +S +   G+  D++    L SS + S++V + 
Sbjct: 308 MSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAE- 366

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             G QV  H  K G  S V VG+++++ Y+K      A   F+ I   NSVC   ++SG+
Sbjct: 367 --GAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGF 424

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       L     M       D F+ S++++A +  +A E GR +HA++++    L  
Sbjct: 425 AQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKS--GLDC 482

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            +++ S++I+MY KCG+V  A +VF++          K+VV W SM+  Y +NG+ KE +
Sbjct: 483 TIYVGSAVIDMYSKCGMVEDAQKVFSVMPE-------KNVVSWNSMITGYAQNGFCKEAL 535

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L++ M  +G  P  V FV ++ ACSH G V+ G  ++  MVH+Y + P  EH +C+VDL
Sbjct: 536 LLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDL 595

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG L++A       L     S    +WG+LLSAC      ++G  AAQ  L L+PH 
Sbjct: 596 LGRAGYLEEA----EAFLLSSSFSKEPGIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHY 651

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
              Y  LSN+YA   +W E+ ++R+LMK+ G++K+ GCSWIE
Sbjct: 652 SSSYTALSNIYASKELWSEVSRIRDLMKDMGVEKEPGCSWIE 693



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 162/337 (48%), Gaps = 25/337 (7%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +N +I+ + +N     A++ F  M + G   +    C  L AST++ D+  G
Sbjct: 207 IENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVG 266

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +   A V K G    VFV +AL+D+Y+K   I D E  F E+  +N V  NAL++GY   
Sbjct: 267 RCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLM 326

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +   L +   + + G++ D FT   L  +C+  S    G QVH + ++    L +DV 
Sbjct: 327 GKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVK--FGLDSDVS 384

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKL 284
           + +S++  Y KCG    AL+ F          IN+ + V W  ++  + +NG  ++ +  
Sbjct: 385 VGNSIVNFYSKCGFTDSALEAFE--------SINRPNSVCWAGIISGFAQNGEGEKALMQ 436

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLV 340
           +  M     K DE +  +VI A S    V+ G       +H + ++ G +      S ++
Sbjct: 437 FCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRH-----LHAHVMKSGLDCTIYVGSAVI 491

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           D+  + G ++ A K+ + M ++     +V  W ++++
Sbjct: 492 DMYSKCGMVEDAQKVFSVMPEK-----NVVSWNSMIT 523



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 136/282 (48%), Gaps = 24/282 (8%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +   I+D  R G    AL  F  M   GI  +     ++++A            + 
Sbjct: 5   NVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLH 64

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL-- 167
             + K G+ + +FV S LI +Y+K   I +A  +FD++P ++ V  N++++GY +  L  
Sbjct: 65  CLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNE 124

Query: 168 WAGGL--ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            A GL   ++       L    FTL+ +L+AC GL  +  G+ VH Y ++      +D+F
Sbjct: 125 EACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVK--IGFDSDLF 182

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +  S + MY KCG       + ++AG   +   NKD+V W +M+  Y +N Y +E I+L+
Sbjct: 183 VSGSTVYMYCKCG-------ILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELF 235

Query: 286 EAMLMNGTKPDEVAFVTVISA-----------CSHTGQVKLG 316
             M + G KP++  F  V+ A           C H   +KLG
Sbjct: 236 YQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLG 277



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 148/314 (47%), Gaps = 20/314 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFM----HVHGIFLDTYALCSSLTASTSVKD 101
           +  R+ + +N +I+ + + G    A   F  M        + +  + L + L A   +  
Sbjct: 102 MPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGC 161

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           +R GK V  +  K G+ S +FV  + + +Y K  ++  A L FD+I  K+ V  N +++G
Sbjct: 162 SRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITG 221

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           Y +       +EL   M   G   +  T   +L+A   +S +  GR  HA +++  C++ 
Sbjct: 222 YAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSM- 280

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKE 280
            DVF+ ++L++MY K   +    + F        GE++K ++V + +++  Y   G ++E
Sbjct: 281 -DVFVATALVDMYSKFYDIEDVERAF--------GEMSKRNLVSFNALITGYSLMGKYEE 331

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK--LEPGPEHYSC 338
            +++Y  +   G +PD   FV + S+CS +  V  G +     VH  K  L+      + 
Sbjct: 332 ALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVH---VHSVKFGLDSDVSVGNS 388

Query: 339 LVDLLCRAGELDKA 352
           +V+   + G  D A
Sbjct: 389 IVNFYSKCGFTDSA 402


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/427 (32%), Positives = 225/427 (52%), Gaps = 44/427 (10%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N++IS + + G    + + F  M    +   T  L   L+A + +KD R GK+V ++
Sbjct: 185 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSY 244

Query: 112 VTKSGWLSSVFVGSALIDLYA-------------------------------KLLLIHDA 140
           V      S++ + +A+ID+YA                                L  I  A
Sbjct: 245 VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 304

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
              FD++P K+ V   A++ GY  +  +   LEL R M A  +  D FT+ ++L ACA L
Sbjct: 305 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 364

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
            A E G  +  Y+ R    + ND+F++++LI+MY KCG V KA  +F     R       
Sbjct: 365 GALELGEWIRTYIDRN--KIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR------- 415

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           D   WT+M+     NG+ ++ + ++  ML     PDE+ ++ V+SAC+HTG V  G +YF
Sbjct: 416 DKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYF 475

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
             M   + +EP   HY CLVDLL RAG L +A+++I  M  + +      +WGALL+ C 
Sbjct: 476 LRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANS----IVWGALLAGCR 531

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
              + ++ ++  ++ LEL+P N  +YV+L N+YA    W+++ +LR++M +KG+KK  GC
Sbjct: 532 VYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGC 591

Query: 441 SWIEVTG 447
           S IE+ G
Sbjct: 592 SLIEMNG 598



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 168/368 (45%), Gaps = 42/368 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N   +N +I  + R   P   +  +  M   G+  D Y         T      +G+Q+ 
Sbjct: 82  NLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLH 141

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
            HV K G   +VFV +AL+ +Y     +  A  +FD  P  + +  N ++S Y +   + 
Sbjct: 142 GHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFE 201

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
               L  +M    +     TL  +L AC+ L     G++VH+Y+  K C + +++ ++++
Sbjct: 202 ESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV--KNCKVESNLVLENA 259

Query: 230 LIEMYGKCGLVTKALQVFN-------------LAGHRLEGEIN-----------KDVVLW 265
           +I+MY  CG +  AL +F              ++G    GEI+           KD V W
Sbjct: 260 MIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSW 319

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           T+M+  Y R+  FKE ++L+  M     KPDE   V+V++AC+H G ++LG E+    + 
Sbjct: 320 TAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG-EWIRTYID 378

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR---------------GHGSSSVS 370
             K++      + L+D+  + G++DKA  +  EM  R               GHG  ++ 
Sbjct: 379 RNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALD 438

Query: 371 MWGALLSA 378
           M+  +L A
Sbjct: 439 MFSNMLKA 446



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 119/260 (45%), Gaps = 15/260 (5%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FDEIP  N    N ++ GY        G+ L   M   G+  D +T   L +    
Sbjct: 71  ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTR 130

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
             A E+GRQ+H ++++    L  +VF+ ++L++MY  CG +  A  VF++          
Sbjct: 131 DIALEYGRQLHGHVLKH--GLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP-------K 181

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
            DV+ W  ++  Y + G F+E  +L+  M      P  V  V V+SACS    ++ G + 
Sbjct: 182 ADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKV 241

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
             + V + K+E      + ++D+    GE+D A  +   M +R      +  W  ++S  
Sbjct: 242 HSY-VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR-----DIISWTTIVSGF 295

Query: 380 HDCGKFELGKLAAQKALELD 399
            + G+ ++ +    K  E D
Sbjct: 296 TNLGEIDVARNYFDKMPEKD 315



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 109/257 (42%), Gaps = 17/257 (6%)

Query: 35  NLGTLT---NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           NLG +    N    +  ++ + +  +I  + R+     AL+ F  M    +  D + + S
Sbjct: 297 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVS 356

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            LTA   +     G+ ++ ++ ++   + +FV +ALID+Y K   +  AE +F E+  ++
Sbjct: 357 VLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 416

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
                A++ G          L++   M    +  D  T   +L AC      + GR+   
Sbjct: 417 KFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRK--- 473

Query: 212 YMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           Y +R     G   ++     L+++  + G + +A +V           I  + ++W ++L
Sbjct: 474 YFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIE------NMPIKANSIVWGALL 527

Query: 270 G---VYGRNGYFKEVIK 283
               VY  +   + V+K
Sbjct: 528 AGCRVYRESDMAEMVVK 544


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/385 (33%), Positives = 213/385 (55%), Gaps = 13/385 (3%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + RNG P  AL  +  M      L  +A   +L A + + D R G+ V A V K+     
Sbjct: 152 YSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPD 211

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
             V +AL+ LY++     +A  MFD +P +N V  N+L++G  + +     +E  R+M  
Sbjct: 212 QVVNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQG 271

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+ +   TL+ +L  CA ++A   G+++HA +++       D  + +SL++MY KCG +
Sbjct: 272 KGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAK--PDAPVLNSLVDMYAKCGAM 329

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
               +VFN       G   KD+  W +++  Y  NG   E ++ ++ M+ +G  PD + F
Sbjct: 330 DYCRRVFN-------GMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITF 382

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + ++S CSH G    G   FE M  D+ + P  EHY+CLVD+L RAG + +A +++  M 
Sbjct: 383 IALLSGCSHAGLADDGCRLFEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMP 442

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +  G    S+WG+LL++C   G   L +  A++  EL+P+N G YVMLSN+YA   MW+
Sbjct: 443 FKPTG----SIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWE 498

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
            +  +RE M+++G+ K+ GCSW+++
Sbjct: 499 SVKVVREFMEKRGMTKEAGCSWLQI 523



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I+   +      A++ F  M   G+      L + L     V     GK++
Sbjct: 241 RNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEI 300

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + KS       V ++L+D+YAK   +     +F+ +  K+    N L++GY      
Sbjct: 301 HAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRM 360

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +E  + M   G   D  T  ALL  C+    A+ G ++   M++    +   V   +
Sbjct: 361 TEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFE-MMKMDHGISPTVEHYA 419

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
            L+++ G+ G + +AL++      +  G I      W S+L
Sbjct: 420 CLVDVLGRAGRIKEALEIVKNMPFKPTGSI------WGSLL 454



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 5/144 (3%)

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           NL N+  ++  LI ++  CG V +A +VF   G     +++    +W +M   Y RNGY 
Sbjct: 103 NLLNNPTLKGKLITLFSVCGRVDEARRVFEDGGE----DVDLPESVWVAMGIGYSRNGYP 158

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           KE + LY  M+    +    AF   + ACS  G ++ G       V     +P     + 
Sbjct: 159 KEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLRTG-RAVHAQVLKATEDPDQVVNNA 217

Query: 339 LVDLLCRAGELDKAWKLINEMLDR 362
           L+ L    G  ++A ++ + M  R
Sbjct: 218 LLRLYSEDGCFEEALRMFDGMPHR 241


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 151/453 (33%), Positives = 244/453 (53%), Gaps = 28/453 (6%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVV 57
            +HA   +TG++   + +  + LM  Y+ C      G++ +  K  +    R+ + +  +
Sbjct: 131 QIHARSIKTGMVGFNVYV-SNTLMRLYSVC------GSIHDVQKVFDECPHRDLVSWTTL 183

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFL--DTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
           I  F + G  LY+    +FM +  + L  D   L   L+A +++ D   G++V +++   
Sbjct: 184 IQAFTKAG--LYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHY 241

Query: 116 -GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
               + VFVG+AL+D+Y K   ++ A  +FDE+PVKN V  NA++SG      +   L+ 
Sbjct: 242 IDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDT 301

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R+M   G+  D  TL  +L +CA L   E G+ VHAYM R   ++  D F+ ++L++MY
Sbjct: 302 FRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRN--HILADKFVGNALLDMY 359

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG + +A +VF       E    +DV  +T+M+     +G      +++  M   G +
Sbjct: 360 AKCGSIDEAFRVF-------ESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIE 412

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           P+EV F+ ++ ACSH G V  G +YF  M   YKL P  EHY C++DLL RAG + +A +
Sbjct: 413 PNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEE 472

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
           +I++M  R      V   GALL AC   G  ++G+   QK  ELDP   G Y++++NLY+
Sbjct: 473 IIHKMEIR----PDVFACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYS 528

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
               W +  ++R+ MK K ++K  GCS IEV G
Sbjct: 529 SVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDG 561



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 169/325 (52%), Gaps = 14/325 (4%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N +I    RN   L  ++  + M V G+  D + +   L A   ++  R G+Q+ A   K
Sbjct: 79  NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138

Query: 115 SGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           +G +  +V+V + L+ LY+    IHD + +FDE P ++ V    L+  + +A L++  +E
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M  L L  D  TL  +L AC+ L     G++VH+Y IR   ++  DVF+ ++L++M
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSY-IRHYIDMKADVFVGNALLDM 257

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KC  +  A +VF+      E  + K+VV W +M+      G ++E +  +  M   G 
Sbjct: 258 YLKCDDLNSAYKVFD------EMPV-KNVVTWNAMISGLAYQGRYREALDTFRMMQDKGV 310

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDK 351
           KPDEV  V V+++C++ G +++G     +M  ++ L    + +  + L+D+  + G +D+
Sbjct: 311 KPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHIL---ADKFVGNALLDMYAKCGSIDE 367

Query: 352 AWKLINEMLDRGHGSSSVSMWGALL 376
           A+++   M  R   S +  ++G  L
Sbjct: 368 AFRVFESMKRRDVYSYTAMIFGLAL 392



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 121/249 (48%), Gaps = 21/249 (8%)

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
           HDA+          S+C NA++       +    +E +  M  +GL+ D FT+  +L+A 
Sbjct: 69  HDAQFCL-------SLC-NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKAL 120

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A +     G+Q+HA  I K   +G +V++ ++L+ +Y  CG +    +VF+   HR    
Sbjct: 121 ALIQGIREGQQIHARSI-KTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHR---- 175

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              D+V WT+++  + + G +   ++ +  M     + D    V V+SACS+ G + LG 
Sbjct: 176 ---DLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQ 232

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           +   ++ H   ++      + L+D+  +  +L+ A+K+ +EM        +V  W A++S
Sbjct: 233 KVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEM-----PVKNVVTWNAMIS 287

Query: 378 ACHDCGKFE 386
                G++ 
Sbjct: 288 GLAYQGRYR 296


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 138/416 (33%), Positives = 214/416 (51%), Gaps = 48/416 (11%)

Query: 65  GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG 124
           G P   L  F  M  +G+  ++  L S L A + +KD + G+ +     + G + +VFV 
Sbjct: 212 GLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVC 271

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL------------ 172
           SAL+ LYA+ L +  A L+FD +P ++ V  N +L+ Y   + +  GL            
Sbjct: 272 SALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVE 331

Query: 173 -----------------------ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
                                  E++R M  LG   +  T+S+ L AC+ L +   G++V
Sbjct: 332 ADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEV 391

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H Y+ R    L  D+   ++L+ MY KCG +  +  VF++          KDVV W +M+
Sbjct: 392 HCYVFRHW--LIGDLTTMTALVYMYAKCGDLNLSRNVFDMI-------CRKDVVAWNTMI 442

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
                +G  +EV+ L+E+ML +G KP+ V F  V+S CSH+  V+ G++ F  M  D+ +
Sbjct: 443 IANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLV 502

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           EP   HY+C+VD+  RAG L +A++ I  M        + S WGALL AC      EL K
Sbjct: 503 EPDANHYACMVDVFSRAGRLHEAYEFIQRM----PMEPTASAWGALLGACRVYKNVELAK 558

Query: 390 LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           ++A K  E++P+N G YV L N+     +W E  + R LMKE+G+ K  GCSW++V
Sbjct: 559 ISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQV 614



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 129/274 (47%), Gaps = 9/274 (3%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           +P   + +IS F   G P  A++ ++ +   GI        +   A  +  DA   K+V 
Sbjct: 96  DPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVH 155

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
               + G +S  F+G+ALI  Y K   +  A  +FD++ VK+ V   ++ S Y    L  
Sbjct: 156 DDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPR 215

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
            GL +   M   G+  +  TLS++L AC+ L   + GR +H + +R    +  +VF+ S+
Sbjct: 216 LGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRH--GMIENVFVCSA 273

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L+ +Y +C  V +A  VF+L  HR       DVV W  +L  Y  N  + + + L+  M 
Sbjct: 274 LVSLYARCLSVKQARLVFDLMPHR-------DVVSWNGVLTAYFTNREYDKGLALFSQMS 326

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
             G + DE  +  VI  C   GQ +  +E    M
Sbjct: 327 SKGVEADEATWNAVIGGCMENGQTEKAVEMLRKM 360



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 110/253 (43%), Gaps = 23/253 (9%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A+ +FD IP  +    + L+S +    L    + L   + A G+   +     + +AC  
Sbjct: 85  AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGA 144

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
              A   ++VH   IR  C + +D F+ ++LI  YGKC  V  A +VF       +  + 
Sbjct: 145 SGDASRVKEVHDDAIR--CGMMSDAFLGNALIHAYGKCKCVEGARRVF-------DDLVV 195

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           KDVV WTSM   Y   G  +  + ++  M  NG KP+ V   +++ ACS    +K G   
Sbjct: 196 KDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSG--- 252

Query: 320 FEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
               +H + +  G        S LV L  R   + +A  + + M  R      V  W  +
Sbjct: 253 --RAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHR-----DVVSWNGV 305

Query: 376 LSACHDCGKFELG 388
           L+A     +++ G
Sbjct: 306 LTAYFTNREYDKG 318


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/446 (31%), Positives = 235/446 (52%), Gaps = 18/446 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HAH  +  L     +  ++ L+  Y  C H   L         L   + + +N +I  
Sbjct: 343 QIHAHVIKADLEADEYV--KNALIDMYAKCEH---LTEARAVFDALAEDDAISYNAMIEG 397

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +N     A+  F  M    +        S L  S+S       KQ+   + KSG    
Sbjct: 398 YSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLD 457

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           ++  SALID+Y+K  L++DA+ +F+ +  K+ V  N+++ G+ + +     ++L   +  
Sbjct: 458 LYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLL 517

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  + FT  AL+   + L++   G+Q HA++I+    + ND  + ++LI+MY KCG +
Sbjct: 518 SGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIK--AGVDNDPHVSNALIDMYAKCGFI 575

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +   +F       E    +DV+ W SM+  Y ++G+ +E ++++  M     +P+ V F
Sbjct: 576 KEGRMLF-------ESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTF 628

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V V+SAC+H G V  G+ +F  M  +Y +EPG EHY+ +V+L  R+G+L  A     E +
Sbjct: 629 VGVLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAA----KEFI 684

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
           +R     + ++W +LLSACH  G  E+G+ AA+ AL  DP + G YV+LSN+YA   +W 
Sbjct: 685 ERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWA 744

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVT 446
           ++  LR+ M   G  K+ GCSWIEVT
Sbjct: 745 DVHNLRQQMDSSGTVKETGCSWIEVT 770



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 184/386 (47%), Gaps = 20/386 (5%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  C        L +C+++   RN + +  +IS + +N     A+  F  M   G   D 
Sbjct: 266 YCKCSRLSAARKLFDCMEY---RNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDG 322

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           +A  S L +  S+     G+Q+ AHV K+   +  +V +ALID+YAK   + +A  +FD 
Sbjct: 323 FACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDA 382

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +   +++  NA++ GY + +  A  + + + M    L     T  +LL   +   A E  
Sbjct: 383 LAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELS 442

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           +Q+H  +I+   +L  D++  S+LI++Y KC LV  A  VFN+  +       KD+V+W 
Sbjct: 443 KQIHGLIIKSGTSL--DLYAASALIDVYSKCSLVNDAKTVFNMLHY-------KDMVIWN 493

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           SM+  + +N   +E IKL+  +L++G  P+E  FV +++  S    +  G ++  W++  
Sbjct: 494 SMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWII-K 552

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGK 384
             ++  P   + L+D+  + G + +       ML        V  W ++++  A H   +
Sbjct: 553 AGVDNDPHVSNALIDMYAKCGFIKEG-----RMLFESTCGEDVICWNSMITTYAQHGHAE 607

Query: 385 FELGKLAAQKALELDPHNVGIYVMLS 410
             L         E++P+ V    +LS
Sbjct: 608 EALQVFRLMGEAEVEPNYVTFVGVLS 633



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 163/343 (47%), Gaps = 14/343 (4%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTF-SFMH 78
           L L     R   NLG L +     +    RN + +  VIS + ++G    A+  F +F  
Sbjct: 53  LFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQK 112

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
                 + + L S L A T  K    G+QV     K    ++V+VG+ALI+LYAKL  + 
Sbjct: 113 ASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMD 172

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           +A L+F  +PV+  V  N +++GY +       LEL   M   G+  D F L++ + AC+
Sbjct: 173 EAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACS 232

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            L   E GRQ+H Y  R       D  + + LI++Y KC  ++ A ++F+   +R     
Sbjct: 233 ALGFLEGGRQIHGYAYRSATE--TDTSVINVLIDLYCKCSRLSAARKLFDCMEYR----- 285

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
             ++V WT+M+  Y +N +  E I ++  M   G +PD  A  +++++C     +  G +
Sbjct: 286 --NLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQ 343

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
               ++    LE      + L+D+  +   L +A  + + + +
Sbjct: 344 IHAHVI-KADLEADEYVKNALIDMYAKCEHLTEARAVFDALAE 385



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 153/313 (48%), Gaps = 18/313 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R P+ +N VI+ + + G    AL+ F  M + G+  D + L S+++A +++     G+Q+
Sbjct: 184 RTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQI 243

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +  +S   +   V + LIDLY K   +  A  +FD +  +N V    ++SGY +    
Sbjct: 244 HGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFN 303

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
           A  + +   M   G   D F  +++L +C  L+A   GRQ+HA++I+   +L  D ++++
Sbjct: 304 AEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIK--ADLEADEYVKN 361

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KC  +T+A  VF+            D + + +M+  Y +N    E + +++ M
Sbjct: 362 ALIDMYAKCEHLTEARAVFDALAE-------DDAISYNAMIEGYSKNRDLAEAVNIFQRM 414

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE----HYSCLVDLLC 344
                +P  + FV+++   S    ++L  +     +H   ++ G        S L+D+  
Sbjct: 415 RFFSLRPSLLTFVSLLGVSSSQLAIELSKQ-----IHGLIIKSGTSLDLYAASALIDVYS 469

Query: 345 RAGELDKAWKLIN 357
           +   ++ A  + N
Sbjct: 470 KCSLVNDAKTVFN 482



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 124/265 (46%), Gaps = 19/265 (7%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R    + A  T +G L  +F+ + L+  Y+ L  + DA  +FD +P +N V   +++S Y
Sbjct: 35  RLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMY 94

Query: 163 CEAKLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
            +       + L V    A     + F L+++LRAC    A   G QVH   ++   +L 
Sbjct: 95  TQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVK--LDLD 152

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            +V++ ++LI +Y K G + +A+ VF+    R         V W +++  Y + G     
Sbjct: 153 ANVYVGTALINLYAKLGCMDEAMLVFHALPVRTP-------VTWNTVITGYAQIGCGGVA 205

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YS 337
           ++L++ M + G +PD     + +SACS  G ++ G +     +H Y      E      +
Sbjct: 206 LELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQ-----IHGYAYRSATETDTSVIN 260

Query: 338 CLVDLLCRAGELDKAWKLINEMLDR 362
            L+DL C+   L  A KL + M  R
Sbjct: 261 VLIDLYCKCSRLSAARKLFDCMEYR 285


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/413 (33%), Positives = 226/413 (54%), Gaps = 19/413 (4%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
            T+ + L   N    +  + +  +I+ F   G     L  F  M +  +  ++++   + 
Sbjct: 159 ATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAA 218

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A  S+     GKQ+ A VTK G      V ++++D+Y +   + DA+  F E+  KN +
Sbjct: 219 RACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLI 278

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N L++GY E    +  L L   M + G   + FT +++  ACA L+    G+QVH  +
Sbjct: 279 TWNTLIAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGI 337

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVY 272
           +R+      +V + +SLI+MY KCG ++ + ++F ++ G        +D+V WT+M+  Y
Sbjct: 338 VRR--GFDKNVALINSLIDMYAKCGSISDSHKLFCDMPG--------RDLVSWTTMMIGY 387

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           G +GY KE +KL++ M+ +G +PD + F+ V+  CSH G V  G++YF  M+ DY + P 
Sbjct: 388 GAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPD 447

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
            E Y C+VDLL RAG +++A++L+  M          S+WGALL AC       LG LAA
Sbjct: 448 QEIYRCVVDLLGRAGRVEEAFQLVENM----PFEPDESVWGALLGACKAYKLSNLGNLAA 503

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Q+ L+  P+  G Y++LS +YA    W E  ++R+LMK    KK+VG SWIE+
Sbjct: 504 QRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAKMRKLMKGMNKKKEVGKSWIEI 556



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 152/335 (45%), Gaps = 14/335 (4%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N    +  R+ + +  +I  F        A   FS M    +  + + + S L A   +K
Sbjct: 64  NLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMK 123

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYA-KLLLIHDAELMFDEIPVKNSVCANALL 159
               G    +  TK G   SV+V +AL+D+YA     + DA  +F++IP+K +V    L+
Sbjct: 124 ALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLI 183

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           +G+        GL   R M    +  + F+ S   RACA +S+   G+Q+HA + +    
Sbjct: 184 AGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKY--G 241

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYF 278
           L  D  + +S+++MY +C  +  A + F        GE+  K+++ W +++  Y R+   
Sbjct: 242 LHCDAPVMNSILDMYCRCNYLCDAKRCF--------GELTEKNLITWNTLIAGYERSDS- 292

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
            E + L+  M   G KP+   F ++ +AC++   +  G +    +V     +      + 
Sbjct: 293 SESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVR-RGFDKNVALINS 351

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           L+D+  + G +  + KL  +M  R   S +  M G
Sbjct: 352 LIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIG 386


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/402 (34%), Positives = 222/402 (55%), Gaps = 14/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ +N + +N +I+ + ++     AL TF  +   GI  ++    S L    S      G
Sbjct: 474 ISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG 533

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V   + K+G  S + V +AL+ ++     +  A+ +F+++P ++ V  N +++G+ + 
Sbjct: 534 KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQH 593

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                  +  ++M   G+  D  T + LL ACA   A   GR++HA +     +   DV 
Sbjct: 594 GKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDC--DVL 651

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + + LI MY KCG +  A QVF    H+L     K+V  WTSM+  Y ++G  KE ++L+
Sbjct: 652 VGTGLISMYTKCGSIEDAHQVF----HKLP---KKNVYSWTSMIAGYAQHGRGKEALELF 704

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M   G KPD + FV  +SAC+H G ++ G+ +F+ M  ++ +EP  EHY C+VDL  R
Sbjct: 705 YQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGR 763

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L++A + I +M           +WGALL AC      EL + AAQK LELDP++ G+
Sbjct: 764 AGLLNEAVEFIIKM----QVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGV 819

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +V+LSN+YA   MW E+ ++R++M ++G+ K  G SWIEV G
Sbjct: 820 FVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDG 861



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 174/366 (47%), Gaps = 26/366 (7%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I  ++ L+  Y  C    N  +       +  ++   +N+++  + ++G    A K    
Sbjct: 145 IFMRNTLINMYAKC---GNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQ 201

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M    +  D     S L A    ++   G+++   + K+GW + +FVG+ALI+++ K   
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGD 261

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I DA  +FD +P ++ V   ++++G      +     L + M   G+  D     +LLRA
Sbjct: 262 IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRA 321

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C    A E G++VHA M  K      ++++ ++++ MY KCG +  AL+VF+L   R   
Sbjct: 322 CNHPEALEQGKKVHARM--KEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR--- 376

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               +VV WT+M+  + ++G   E    +  M+ +G +P+ V F++++ ACS    +K G
Sbjct: 377 ----NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRG 432

Query: 317 IEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
            +     + D+ +E G        + L+ +  + G L  A ++  ++        +V  W
Sbjct: 433 QQ-----IQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI-----SKQNVVAW 482

Query: 373 GALLSA 378
            A+++A
Sbjct: 483 NAMITA 488



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 174/369 (47%), Gaps = 19/369 (5%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           ++G  T     L  R+ + +  +I+   R+G    A   F  M   G+  D  A  S L 
Sbjct: 261 DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLR 320

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A    +    GK+V A + + GW + ++VG+A++ +Y K   + DA  +FD +  +N V 
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
             A+++G+ +             M   G++ +  T  ++L AC+  SA + G+Q+  ++I
Sbjct: 381 WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
                 G+D  ++++L+ MY KCG +  A +VF       E    ++VV W +M+  Y +
Sbjct: 441 E--AGYGSDDRVRTALLSMYAKCGSLKDAHRVF-------EKISKQNVVAWNAMITAYVQ 491

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +  +   +  ++A+L  G KP+   F ++++ C  +  ++LG ++  +++    LE    
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLH 550

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK----FELGKL 390
             + LV +    G+L  A  L N+M  R      +  W  +++     GK    F+  K+
Sbjct: 551 VSNALVSMFVNCGDLMSAKNLFNDMPKR-----DLVSWNTIIAGFVQHGKNQVAFDYFKM 605

Query: 391 AAQKALELD 399
             +  ++ D
Sbjct: 606 MQESGIKPD 614



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 183/377 (48%), Gaps = 31/377 (8%)

Query: 42  CLKFLNPRNPLPFNVVISDFCRNGS---PLYALKTFSFMHVHGIFLDTYALCSSLTASTS 98
           C+ F + ++    N V++   + G     +  L+     H+  I+  TY+  + L     
Sbjct: 66  CVVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQ-IYRQTYS--ALLQLCIK 122

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
            K+   G+++  H+ KSG    +F+ + LI++YAK      A+ +FD++  K+    N L
Sbjct: 123 FKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLL 182

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           L GY +  L+    +L   M    +  D  T  ++L ACA     + GR+++  +++   
Sbjct: 183 LGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK--A 240

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
               D+F+ ++LI M+ KCG +  A +VF+    R       D+V WTSM+    R+G F
Sbjct: 241 GWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR-------DLVTWTSMITGLARHGRF 293

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY 336
           K+   L++ M   G +PD+VAFV+++ AC+H   ++ G +     VH    E G   E Y
Sbjct: 294 KQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKK-----VHARMKEVGWDTEIY 348

Query: 337 --SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
             + ++ +  + G ++ A     E+ D   G + VS W A+++     G+ +   L   K
Sbjct: 349 VGTAILSMYTKCGSMEDAL----EVFDLVKGRNVVS-WTAMIAGFAQHGRIDEAFLFFNK 403

Query: 395 ALE--LDPHNVGIYVML 409
            +E  ++P+ V    +L
Sbjct: 404 MIESGIEPNRVTFMSIL 420



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 154/310 (49%), Gaps = 20/310 (6%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVI 58
           VHA   E G      I   + ++  YT C      G++ + L+  +    RN + +  +I
Sbjct: 334 VHARMKEVGW--DTEIYVGTAILSMYTKC------GSMEDALEVFDLVKGRNVVSWTAMI 385

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           + F ++G    A   F+ M   GI  +     S L A +S    + G+Q+Q H+ ++G+ 
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S   V +AL+ +YAK   + DA  +F++I  +N V  NA+++ Y + + +   L   + +
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              G+  +  T +++L  C    + E G+ VH ++I K   L +D+ + ++L+ M+  CG
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELGKWVH-FLIMK-AGLESDLHVSNALVSMFVNCG 563

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A  +FN    R       D+V W +++  + ++G  +     ++ M  +G KPD++
Sbjct: 564 DLMSAKNLFNDMPKR-------DLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKI 616

Query: 299 AFVTVISACS 308
            F  +++AC+
Sbjct: 617 TFTGLLNACA 626



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 8/236 (3%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +L +  N    +  R+ + +N +I+ F ++G    A   F  M   GI  D       L 
Sbjct: 564 DLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLN 623

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A  S +    G+++ A +T++ +   V VG+ LI +Y K   I DA  +F ++P KN   
Sbjct: 624 ACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYS 683

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
             ++++GY +       LEL   M   G+  D  T    L ACA     E G  +H +  
Sbjct: 684 WTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG--LHHFQS 741

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            K  N+   +     +++++G+ GL+ +A++        ++ ++  D  +W ++LG
Sbjct: 742 MKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFI------IKMQVEPDSRVWGALLG 791


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 233/434 (53%), Gaps = 43/434 (9%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKT 73
           I F + L+  Y+ C      G L   L+    +  RN + +  +I+ + R+G    A+  
Sbjct: 286 INFSNTLLDMYSKC------GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIIL 339

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
              M   G+ LD  A+ S L A         GK V  ++  +   S++FV +AL+D+YAK
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK 399

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A  +F  + VK+ +  N ++                 L P      D  T++ +
Sbjct: 400 CGSMEGANSVFSTMVVKDIISWNTMVG---------------ELKP------DSRTMACI 438

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA LSA E G+++H Y++R      +D  + ++L+++Y KCG++  A  +F++    
Sbjct: 439 LPACASLSALERGKEIHGYILRN--GYSSDRHVANALVDLYVKCGVLGLARLLFDMIP-- 494

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                +KD+V WT M+  YG +GY  E I  +  M   G +PDEV+F++++ ACSH+G +
Sbjct: 495 -----SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  +F  M +D+ +EP  EHY+C+VDLL R G L KA+K I  +      +   ++WG
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETL----PIAPDATIWG 605

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL  C      EL +  A++  EL+P N G YV+L+N+YA+    +E+ ++RE + +KG
Sbjct: 606 ALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKG 665

Query: 434 LKKDVGCSWIEVTG 447
           L+K+ GCSWIE+ G
Sbjct: 666 LRKNPGCSWIEIKG 679



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 122/263 (46%), Gaps = 27/263 (10%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD++  ++ +  N+++SGY    L   GL + + M  LG+D D  T+ ++L  CA 
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
                 G+ VH+  I+   +    +   ++L++MY KCG +  AL+VF   G R      
Sbjct: 264 SGTLSLGKAVHSLAIKS--SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER------ 315

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
            +VV WTSM+  Y R+G+    I L + M   G K D VA  +++ AC+ +G +  G + 
Sbjct: 316 -NVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD- 373

Query: 320 FEWMVHDY--KLEPGPEHYSC--LVDLLCRAGELDKAWKLINEMLDR---------GHGS 366
               VHDY          + C  L+D+  + G ++ A  + + M+ +         G   
Sbjct: 374 ----VHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELK 429

Query: 367 SSVSMWGALLSACHDCGKFELGK 389
                   +L AC      E GK
Sbjct: 430 PDSRTMACILPACASLSALERGK 452



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 164/372 (44%), Gaps = 49/372 (13%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS +  NG     L  +  M   GI +D   + S L    +      GK V
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +   KS +   +   + L+D+Y+K   +  A  +F+++  +N V   ++++GY      
Sbjct: 274 HSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWS 333

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G + L++ M   G+  D   ++++L ACA   + + G+ VH Y+  K  N+ +++F+ +
Sbjct: 334 DGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI--KANNMASNLFVCN 391

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  A  VF+         + KD++ W +M+G                  
Sbjct: 392 ALMDMYAKCGSMEGANSVFSTM-------VVKDIISWNTMVGEL---------------- 428

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHYS-CLVDLLC 344
                KPD      ++ AC+    ++ G E     +H Y L  G     H +  LVDL  
Sbjct: 429 -----KPDSRTMACILPACASLSALERGKE-----IHGYILRNGYSSDRHVANALVDLYV 478

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHN 402
           + G L  A +L+ +M+     S  +  W  +++    H  G   +      +   ++P  
Sbjct: 479 KCGVLGLA-RLLFDMIP----SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDE 533

Query: 403 VGIYVMLSNLYA 414
           V     +S LYA
Sbjct: 534 VSF---ISILYA 542



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 27/186 (14%)

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           NA +  +C+       +ELV +     L+    T  ++L+ CAGL +   G++VH+  I 
Sbjct: 70  NAKILHFCQLGDLENAMELVCMCQKSELETK--TYGSVLQLCAGLKSLTDGKKVHS--II 125

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
           K  ++G D  +   L+  Y  CG + +  +VF+           K+V LW  M+  Y + 
Sbjct: 126 KSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTME-------KKNVYLWNFMVSEYAKI 178

Query: 276 GYFKEVIKLYEAML---MNGTKP-------------DEVAFVTVISACSHTGQVKLGIEY 319
           G FKE I L++ M+   + G +P             D +++ ++IS     G  + G+  
Sbjct: 179 GDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGI 238

Query: 320 FEWMVH 325
           ++ M++
Sbjct: 239 YKQMMY 244


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/406 (33%), Positives = 233/406 (57%), Gaps = 29/406 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I+ + +N  P  AL+ F  M + GI  D   + S  +  + + D R  + +
Sbjct: 286 RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSI 345

Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
              V +  WL   V +G+AL+++YAKL  ++ A  +FD++P K+++  N L++GY +  L
Sbjct: 346 LGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGL 405

Query: 168 WAGGLELVRLM-------PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            +  ++   +M       P  G      T  +++ A + + A + G ++HA +I+    L
Sbjct: 406 ASEAIDAYNMMEECRDTIPNQG------TWVSIIPAYSHVGALQQGMKIHAKLIKNSLYL 459

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV-VLWTSMLGVYGRNGYFK 279
             DVF+ + LI++YGKCG +  A+ +F         EI +D  V W +++   G +G  +
Sbjct: 460 --DVFVATCLIDLYGKCGRLEDAMSLFY--------EIPRDTSVPWNAIIASLGIHGRGE 509

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E ++L++ ML    K D + FV+++SACSH+G V  G + F+ M  +Y ++P  +HY C+
Sbjct: 510 EALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCM 569

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL RAG L+KA++L+  M  +       S+WGALLSAC   G  ELG LA+ + LE+D
Sbjct: 570 VDLLGRAGYLEKAYELVRNMPIQ----PDASIWGALLSACKIYGNAELGTLASDRLLEVD 625

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             NVG YV+LSN+YA    W+ + ++R L +++GL+K  G S + V
Sbjct: 626 SENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVV 671



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 165/334 (49%), Gaps = 15/334 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS FC+NG+   AL   + M   G+ +DT  + S L       D   G  +  HV 
Sbjct: 190 WNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL 249

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G  S VFV +ALI++Y+K   + DA+++FD++ V++ V  N++++ Y +    +  L 
Sbjct: 250 KHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALR 309

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
             + M   G+  D  T+ +L    + LS     R +  ++IR+   L  DV + ++L+ M
Sbjct: 310 FFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREW-LDKDVVIGNALVNM 368

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NG 292
           Y K G +  A  VF+           KD + W +++  Y +NG   E I  Y  M     
Sbjct: 369 YAKLGYMNCAHTVFDQLPR-------KDTISWNTLVTGYTQNGLASEAIDAYNMMEECRD 421

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
           T P++  +V++I A SH G ++ G++    ++ +  L       +CL+DL  + G L+ A
Sbjct: 422 TIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLEDA 480

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
             L  E+       +SV  W A++++    G+ E
Sbjct: 481 MSLFYEI----PRDTSVP-WNAIIASLGIHGRGE 509



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 179/367 (48%), Gaps = 23/367 (6%)

Query: 1   NVHAHQFETGLLLIC----LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNV 56
           NV+A +    LLL+      I+  ++L+  Y T     ++    +   +++ +N   +N 
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVT---HGDISLSRSTFDYIHKKNIFSWNS 90

Query: 57  VISDFCRNGSPLYAL----KTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +IS + R G    A+    + FS      +  D Y     L A  S+ D   GK+V   V
Sbjct: 91  IISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCV 147

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
            K G+   VFV ++L+ LY++  ++  A  +F ++PVK+    NA++SG+C+    AG L
Sbjct: 148 FKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGAL 207

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
            ++  M   G+  D  T++++L  CA       G  +H ++++    L +DVF+ ++LI 
Sbjct: 208 GVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKH--GLDSDVFVSNALIN 265

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY K G +  A  VF+      + E+ +D+V W S++  Y +N      ++ ++ M + G
Sbjct: 266 MYSKFGRLQDAQMVFD------QMEV-RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGG 318

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            +PD +  V++ S  S     ++      +++    L+      + LV++  + G ++ A
Sbjct: 319 IRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCA 378

Query: 353 WKLINEM 359
             + +++
Sbjct: 379 HTVFDQL 385


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 236/447 (52%), Gaps = 50/447 (11%)

Query: 35  NLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
            LG + N  K  +    ++ + +N ++  + + G    A+  +       +  + ++   
Sbjct: 141 KLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAG 200

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE----- 146
            L     +K+ +  KQV   V  +G+LS++ + S+++D YAK   +  A  +FDE     
Sbjct: 201 VLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKD 260

Query: 147 --------------------------IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
                                     +P KN V  +AL+SGY    L    L+    M  
Sbjct: 261 IHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMK 320

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC--CNLGNDVFMQSSLIEMYGKCG 238
            G++ + +T S+ L ACA ++A + G+QVH Y+IR    CN      + SSLI+MY KCG
Sbjct: 321 FGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCN----TIVVSSLIDMYSKCG 376

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
           ++  +  VF+L G++      +DVV+W +M+    +NG+ ++ ++++  M+ +G KPD +
Sbjct: 377 MLEASCCVFHLMGNK------QDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRI 430

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            F+ ++SACSH+G V+ G+ +F+ M +D+ + P  EHYSCL+DLL RAG      +L+NE
Sbjct: 431 TFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCF---VELVNE 487

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
            L+         +W ALL  C      ELG+  A++ +EL P +   YV L++LYA    
Sbjct: 488 -LENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGK 546

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEV 445
           W+ + ++RELM EK ++K+ G SWI+V
Sbjct: 547 WESVEKVRELMDEKFIRKERGISWIDV 573



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 135/306 (44%), Gaps = 33/306 (10%)

Query: 131 YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
           YAKL  +++A  +FD +  K+ V  N ++  Y +   +   + L R    L + ++ F+ 
Sbjct: 139 YAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSF 198

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-- 248
           + +L  C  L   +  +QVH  ++       +++ + SS+++ Y KCG +  A  +F+  
Sbjct: 199 AGVLILCVKLKELQLAKQVHGQVL--VAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEM 256

Query: 249 -----------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYE 286
                      ++G+   G++N           K+ V W++++  Y RN    E +  + 
Sbjct: 257 LVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFT 316

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M+  G  P++  F + + AC+    +K G +   +++  Y         S L+D+  + 
Sbjct: 317 KMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTY-FRCNTIVVSSLIDMYSKC 375

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVG 404
           G L+ +  + + M ++      V +W  ++SA    G  E         +E  L P  + 
Sbjct: 376 GMLEASCCVFHLMGNK----QDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRIT 431

Query: 405 IYVMLS 410
             V+LS
Sbjct: 432 FIVILS 437


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 223/402 (55%), Gaps = 13/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +N ++   +N VI    +NG P+ AL  +  M   GI  D +++ S L A   +   ++G
Sbjct: 477 MNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   V ++G   + FV  +L+ LY            F+ +  KNSVC NA+LSGY + 
Sbjct: 537 KEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQN 596

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +L    L L R M + GL+ D   ++++L AC+ LSA   G++VH + ++   +L  D F
Sbjct: 597 ELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKN--SLMEDNF 654

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +  SL++MY K G +  + ++FN    RL G   K+V  W  M+  +G +G   + ++L+
Sbjct: 655 VACSLMDMYAKSGFLGHSQRIFN----RLNG---KEVASWNVMITGFGVHGQGNKAVELF 707

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M  +  +PD   F+ V+ AC H G V  G+ Y   M   YKLEP  EHY+C++D+L R
Sbjct: 708 EDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGR 767

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L++A   INEM +         +W +LLS+       E+G+  A+K L L+ +    
Sbjct: 768 AGRLNEALNFINEMPEE----PDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADS 823

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           Y++LSNLYA    WD +  +R+ MK+  L+KDVGCSWIE+ G
Sbjct: 824 YILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRG 865



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-S 75
            +  +RL+  Y+ C +      + +  + LN +N   +N ++S + RN     A+ TF  
Sbjct: 143 FVLNTRLITMYSICGYPLESRLVFD--RLLN-KNLFQWNALVSGYVRNELYDEAIHTFLE 199

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            + V     D +     + A T   D   GK V     K G +  +FVG+A+I LY K  
Sbjct: 200 LISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCG 259

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR--LMPALGLDYDHFTLSAL 193
            + +A  +FD++P +N +  N+L+ G+ E   W       R  L    GL  D  T+  L
Sbjct: 260 FLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTL 319

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L  C+G    + G  +H   ++    L +++ + ++LI+MY KCG +++A  +F     +
Sbjct: 320 LPVCSGEGNVDVGMVIHGMAVK--LGLVHELMVCNALIDMYSKCGCLSEAAILF----RK 373

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT--KPDEVAFVTVISAC 307
           +E   NK VV W SM+G Y R G+  E   L   M M     + +EV  + ++ AC
Sbjct: 374 IE---NKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 18/293 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +N + +N +I  F  NG  L A + F  +     G+  D   + + L   +   +   G 
Sbjct: 274 QNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM 333

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +     K G +  + V +ALID+Y+K   + +A ++F +I  K+ V  N+++  Y    
Sbjct: 334 VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREG 393

Query: 167 LWAGGLELVR--LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                 +L+R   M    ++ +  T+  LL AC   S     R +H Y +R   +     
Sbjct: 394 FVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRH--SFQYKE 451

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + ++ I  Y KCG +  A  VF        G   K V  W +++G + +NG   + +  
Sbjct: 452 LINNAFIAAYAKCGSLVFAEHVFF-------GMNTKSVSSWNAVIGGHAQNGDPIKALDF 504

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
           Y  M   G  PD+ + V+++ AC   G ++ G E     +H + L  G E  S
Sbjct: 505 YFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKE-----IHGFVLRNGLEMNS 552



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 27/234 (11%)

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMI 214
           +S  CEA    G L+ ++        YD       +  LL+ C      E GR++   M+
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDE-ML 133

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
                   D  + + LI MY  CG   ++  VF+    RL   +NK++  W +++  Y R
Sbjct: 134 CVSSQFSGDFVLNTRLITMYSICGYPLESRLVFD----RL---LNKNLFQWNALVSGYVR 186

Query: 275 NGYFKEVIKLY-EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           N  + E I  + E + +   +PD   F  +I AC+    + LG       VH   ++ G 
Sbjct: 187 NELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKS-----VHGMAVKMGL 241

Query: 334 EHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
                  + ++ L  + G LD+A +L ++M ++     ++  W +L+    + G
Sbjct: 242 IMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQ-----NLISWNSLIRGFSENG 290


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 139/427 (32%), Positives = 225/427 (52%), Gaps = 44/427 (10%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N++IS + + G    + + F  M    +   T  L   L+A + +KD R GK+V ++
Sbjct: 206 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSY 265

Query: 112 VTKSGWLSSVFVGSALIDLYA-------------------------------KLLLIHDA 140
           V      S++ + +A+ID+YA                                L  I  A
Sbjct: 266 VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 325

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
              FD++P K+ V   A++ GY  +  +   LEL R M A  +  D FT+ ++L ACA L
Sbjct: 326 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 385

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
            A E G  +  Y+ R    + ND+F++++LI+MY KCG V KA  +F     R       
Sbjct: 386 GALELGEWIRTYIDRN--KIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR------- 436

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           D   WT+M+     NG+ ++ + ++  ML     PDE+ ++ V+SAC+HTG V  G +YF
Sbjct: 437 DKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYF 496

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
             M   + +EP   HY CLVDLL RAG L +A+++I  M  + +      +WGALL+ C 
Sbjct: 497 LRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANS----IVWGALLAGCR 552

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
              + ++ ++  ++ LEL+P N  +YV+L N+YA    W+++ +LR++M +KG+KK  GC
Sbjct: 553 VYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGC 612

Query: 441 SWIEVTG 447
           S IE+ G
Sbjct: 613 SLIEMNG 619



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 168/368 (45%), Gaps = 42/368 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N   +N +I  + R   P   +  +  M   G+  D Y         T      +G+Q+ 
Sbjct: 103 NLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLH 162

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
            HV K G   +VFV +AL+ +Y     +  A  +FD  P  + +  N ++S Y +   + 
Sbjct: 163 GHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFE 222

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
               L  +M    +     TL  +L AC+ L     G++VH+Y+  K C + +++ ++++
Sbjct: 223 ESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV--KNCKVESNLVLENA 280

Query: 230 LIEMYGKCGLVTKALQVFN-------------LAGHRLEGEIN-----------KDVVLW 265
           +I+MY  CG +  AL +F              ++G    GEI+           KD V W
Sbjct: 281 MIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSW 340

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           T+M+  Y R+  FKE ++L+  M     KPDE   V+V++AC+H G ++LG E+    + 
Sbjct: 341 TAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG-EWIRTYID 399

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR---------------GHGSSSVS 370
             K++      + L+D+  + G++DKA  +  EM  R               GHG  ++ 
Sbjct: 400 RNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALD 459

Query: 371 MWGALLSA 378
           M+  +L A
Sbjct: 460 MFSNMLKA 467



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 119/260 (45%), Gaps = 15/260 (5%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FDEIP  N    N ++ GY        G+ L   M   G+  D +T   L +    
Sbjct: 92  ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTR 151

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
             A E+GRQ+H ++++    L  +VF+ ++L++MY  CG +  A  VF++          
Sbjct: 152 DIALEYGRQLHGHVLKH--GLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP-------K 202

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
            DV+ W  ++  Y + G F+E  +L+  M      P  V  V V+SACS    ++ G + 
Sbjct: 203 ADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKV 262

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
             + V + K+E      + ++D+    GE+D A  +   M +R      +  W  ++S  
Sbjct: 263 HSY-VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR-----DIISWTTIVSGF 316

Query: 380 HDCGKFELGKLAAQKALELD 399
            + G+ ++ +    K  E D
Sbjct: 317 TNLGEIDVARNYFDKMPEKD 336



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 109/257 (42%), Gaps = 17/257 (6%)

Query: 35  NLGTLT---NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           NLG +    N    +  ++ + +  +I  + R+     AL+ F  M    +  D + + S
Sbjct: 318 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVS 377

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            LTA   +     G+ ++ ++ ++   + +FV +ALID+Y K   +  AE +F E+  ++
Sbjct: 378 VLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRD 437

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
                A++ G          L++   M    +  D  T   +L AC      + GR+   
Sbjct: 438 KFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRK--- 494

Query: 212 YMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           Y +R     G   ++     L+++  + G + +A +V           I  + ++W ++L
Sbjct: 495 YFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIE------NMPIKANSIVWGALL 548

Query: 270 G---VYGRNGYFKEVIK 283
               VY  +   + V+K
Sbjct: 549 AGCRVYRESDMAEMVVK 565


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/400 (33%), Positives = 211/400 (52%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +N +I+   +NG     +  F+ M   G+  D +   S L A  +++   +G
Sbjct: 412 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG 471

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
             V   V KSG  S  FV S ++D+Y K  +I +A+ + D I  +  V  NA+LSG+   
Sbjct: 472 LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLN 531

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           K      +    M  +GL  DHFT + +L  CA L+  E G+Q+H  +I++   + +D +
Sbjct: 532 KESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQ--EMLDDEY 589

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L++MY KCG +  +L VF     R       D V W +M+  Y  +G   E ++++
Sbjct: 590 ISSTLVDMYAKCGDMPDSLLVFEKVEKR-------DFVSWNAMICGYALHGLGVEALRMF 642

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M      P+   FV V+ ACSH G    G  YF  M   YKLEP  EH++C+VD+L R
Sbjct: 643 ERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGR 702

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           +    +A K IN M       +   +W  LLS C      E+ +LAA   L LDP +  +
Sbjct: 703 SKGPQEAVKFINSM----PFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSV 758

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y++LSN+YA+   W ++ + R L+K+  LKK+ GCSWIEV
Sbjct: 759 YILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEV 798



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 184/384 (47%), Gaps = 34/384 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVV 57
            VHA   +TGL +   +   S L+  Y  CR      +L + L F   +  RN + +   
Sbjct: 170 QVHALAVKTGLEID--VRTGSALVDMYGKCR------SLDDALCFFYGMPERNWVSWGAA 221

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+   +N   +  L+ F  M   G+ +   +  S+  +  ++     G+Q+ AH  K+ +
Sbjct: 222 IAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKF 281

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            S   VG+A++D+YAK   + DA   F  +P      +NA++ G   A L    + L + 
Sbjct: 282 SSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQF 341

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M    + +D  +LS +  ACA       G+QVH   I+   ++  D+ + ++++++YGKC
Sbjct: 342 MIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDV--DICVNNAVLDLYGKC 399

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
             + +A  +F       +G   KD V W +++    +NG++ + I  +  ML  G KPD+
Sbjct: 400 KALMEAYLIF-------QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDD 452

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAW 353
             + +V+ AC+    ++ G+     MVHD  ++ G        S +VD+ C+ G +D+A 
Sbjct: 453 FTYGSVLKACAALRSLEYGL-----MVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQ 507

Query: 354 KLINEMLDRGHGSSSVSMWGALLS 377
           KL + +     G   V  W A+LS
Sbjct: 508 KLHDRI-----GGQQVVSWNAILS 526



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 168/365 (46%), Gaps = 27/365 (7%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY 87
           T   H  ++ T       +   + + +N ++S +C+ G    ++  F  M   G+  D  
Sbjct: 91  TAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRT 150

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
                L + +++++   G QV A   K+G    V  GSAL+D+Y K   + DA   F  +
Sbjct: 151 TFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGM 210

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           P +N V   A ++G  + + +  GLEL   M  LGL     + ++  R+CA +S    GR
Sbjct: 211 PERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGR 270

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV-FNLAGHRLEGEINKDVVLWT 266
           Q+HA+ I+      +D  + ++++++Y K   +T A +  F L  H +E      V L  
Sbjct: 271 QLHAHAIKN--KFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVR 328

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE-WMVH 325
           + LG+        E + L++ M+ +  + D V+   V SAC+ T        YF+   VH
Sbjct: 329 AGLGI--------EAMGLFQFMIRSSIRFDVVSLSGVFSACAETKG------YFQGQQVH 374

Query: 326 DYKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
              ++ G +   C    ++DL  +   L +A+ +   M  +     SVS W A+++A   
Sbjct: 375 CLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK----DSVS-WNAIIAALEQ 429

Query: 382 CGKFE 386
            G ++
Sbjct: 430 NGHYD 434



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 10/230 (4%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           + ++  Y+    I  A  +FD +P  + V  NAL+SGYC+  ++   ++L   M   G+ 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D  T + LL++C+ L     G QVHA  ++    L  DV   S+L++MYGKC  +  AL
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKT--GLEIDVRTGSALVDMYGKCRSLDDAL 204

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
             F        G   ++ V W + +    +N  +   ++L+  M   G    + ++ +  
Sbjct: 205 CFFY-------GMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAF 257

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
            +C+    +  G +     + + K        + +VD+  +A  L  A +
Sbjct: 258 RSCAAMSCLNTGRQLHAHAIKN-KFSSDRVVGTAIVDVYAKANSLTDARR 306


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 225/398 (56%), Gaps = 15/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS + + G  L A+  FS M    I  +   L + L +  S++  +  KQ+
Sbjct: 348 KDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQI 407

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                KSG  S  +V ++L+D Y K   I +A  +F+E   ++ V   ++++ Y +    
Sbjct: 408 HTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDG 467

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M    +  D F  S+LL ACA LSA E G+Q+H + I+       D+F  +
Sbjct: 468 EEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK--FGFMCDIFASN 525

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           SL+ MY KCG +  A + F+        EI N+ +V W++M+G Y ++G+ KE ++L+  
Sbjct: 526 SLVNMYAKCGSIEDADRAFS--------EIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQ 577

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           ML +G  P+ +  V+V+ AC+H G V  G +YFE M   + ++P  EHY+C++DLL R+G
Sbjct: 578 MLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSG 637

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           +L++A +L+N +     G     +WGALL A       ELG+ AA+   +L+P   G +V
Sbjct: 638 KLNEAVELVNSIPFEADG----FVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHV 693

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +L+N+YA   MW+ + ++R+ MK+  +KK+ G SWIE+
Sbjct: 694 LLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEI 731



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 176/367 (47%), Gaps = 22/367 (5%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78
            ++ L+  Y+ CR     G     +   +  + + ++ ++S + +NG    AL  F+ M 
Sbjct: 18  LRNHLVTLYSKCRR---FGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMC 74

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
           + G+  + +   S L A +  +D   G++V      +G+ S  FV + L+ +YAK  L+ 
Sbjct: 75  LLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLD 134

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           D+  +F  I  +N V  NAL S Y +++L    + L + M   G+  + F++S +L ACA
Sbjct: 135 DSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACA 194

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
           GL   + GR++H  M++   +L  D F  ++L++MY K G +  A+ VF    H      
Sbjct: 195 GLQEGDLGRKIHGLMLKMGLDL--DQFSANALVDMYSKAGEIEGAVAVFQDIAH------ 246

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
             DVV W +++     +      + L + M  +GT+P+     + + AC+  G  +LG +
Sbjct: 247 -PDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQ 305

Query: 319 YFEWMVHDYKLEPGPEHYSC--LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
               ++   K++   + ++   LVD+  +   +D A +  + M  +      +  W AL+
Sbjct: 306 LHSSLI---KMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKK-----DIIAWNALI 357

Query: 377 SACHDCG 383
           S    CG
Sbjct: 358 SGYSQCG 364



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 159/319 (49%), Gaps = 21/319 (6%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           AL     M   G   + + L S+L A  ++     G+Q+ + + K    S +F    L+D
Sbjct: 268 ALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVD 327

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y+K  ++ DA   +D +P K+ +  NAL+SGY +       + L   M +  +D++  T
Sbjct: 328 MYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTT 387

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           LS +L++ A L A +  +Q+H   I+    + +D ++ +SL++ YGKC  + +A ++F  
Sbjct: 388 LSTVLKSVASLQAIKVCKQIHTISIKS--GIYSDFYVINSLLDTYGKCNHIDEASKIF-- 443

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                E    +D+V +TSM+  Y + G  +E +KLY  M     KPD     ++++AC++
Sbjct: 444 -----EERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACAN 498

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYS--CLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
               + G +     VH  K     + ++   LV++  + G ++ A +  +E+ +RG    
Sbjct: 499 LSAYEQGKQLH---VHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRG---- 551

Query: 368 SVSMWGALLS--ACHDCGK 384
            +  W A++   A H  GK
Sbjct: 552 -IVSWSAMIGGYAQHGHGK 569



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 142/299 (47%), Gaps = 21/299 (7%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++ AH+ K G+     + + L+ LY+K      A  + DE    + V  ++LLSGY +  
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L +   M  LG+  + FT  ++L+AC+       GR+VH   +       +D F+
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAV--VTGFESDGFV 119

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L+ MY KCGL+  + ++F        G + ++VV W ++   Y ++    E + L++
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFG-------GIVERNVVSWNALFSCYVQSELCGEAVGLFK 172

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS--CLVDLLC 344
            M+ +G  P+E +   +++AC+   +  LG +    M+   K+    + +S   LVD+  
Sbjct: 173 EMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLML---KMGLDLDQFSANALVDMYS 229

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPH 401
           +AGE++ A  +  ++         V  W A+++ C  HDC    L  L   K     P+
Sbjct: 230 KAGEIEGAVAVFQDI-----AHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPN 283


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/407 (35%), Positives = 221/407 (54%), Gaps = 19/407 (4%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSP-----LYALKTFSFMHVHGIFLDTYALCSSLTASTS 98
           +  +P + + +N ++  + R+ +P       A++ F  M   G+  DTY   S L A  +
Sbjct: 86  RVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLKACAA 145

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
            +    G+Q  A   K G     +V   LI++YA+      A +MF        V  NA+
Sbjct: 146 ARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYNAM 205

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           ++    +      L L R M   GL     T+ ++L ACA L A E GR VH Y +RK  
Sbjct: 206 IAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDY-VRKI- 263

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
            LG+ V + ++LI+MY KCG +  A+ VF       +G  +KD   W+ M+  Y  +GY 
Sbjct: 264 GLGSLVKVSTALIDMYAKCGSLEDAIDVF-------QGMESKDRQAWSVMIVAYANHGYG 316

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           +E I L+E M   G KPD++ F+ V+ ACSH+G V  G++YF+ M  D+ + PG +HY C
Sbjct: 317 REAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDM-KDHGIVPGIKHYGC 375

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           + DLL R+G+L++A+K I+E+      + +  +W  LLSAC   G FELGK   ++ L+L
Sbjct: 376 VTDLLARSGQLERAYKFIDELPI----NPTPILWRTLLSACGGHGDFELGKRVFERILKL 431

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           D  + G YV+ SNL A    W+E+  +R+LM EKG+ K  GCS IE+
Sbjct: 432 DDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEI 478


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 238/446 (53%), Gaps = 19/446 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VH +   TGL  I      + L+  Y+ C   ++   +    + +  +N + +  +I+ +
Sbjct: 107 VHGYSVRTGL--ISETSLGNALLDMYSNCSDWRSTNKI---FRNMEQKNVVSWTAMITSY 161

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            R G        F  M + GI  D +A+ S+L A    +  + GK V  +  ++G    +
Sbjct: 162 TRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVL 221

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            V +AL+++Y K   + +A  +FD +  K+++  N L+ GY  + L      L   M  L
Sbjct: 222 PVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEM-LL 280

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            L  +  T++ +L A A LS+ E GR++HAY +R+      D F+ ++L++MY KCG + 
Sbjct: 281 QLRPNAVTMACILPAAASLSSLERGREMHAYAVRR--GYLEDNFVANALVDMYVKCGALL 338

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A ++F++         NK+++ WT M+  YG +G  ++ I L+E M  +G +PD  +F 
Sbjct: 339 LARRLFDML-------TNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFS 391

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            ++ ACSH+G    G  +F  M +++++EP  +HY+C+VDLLC  G L +A++ I  M  
Sbjct: 392 AILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPI 451

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
                   S+W +LL  C      +L +  A+   EL+P N G YV+L+N+YA+   W+ 
Sbjct: 452 ----EPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEA 507

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
           + +L+  +  +GL+++ GCSWIEV G
Sbjct: 508 VRKLKNKVGGRGLRENTGCSWIEVRG 533



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 145/314 (46%), Gaps = 11/314 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I     NG    A++ F  M + G  LD+  L S + A      +  G  V
Sbjct: 48  RDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVV 107

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +  ++G +S   +G+AL+D+Y+          +F  +  KN V   A+++ Y  A  +
Sbjct: 108 HGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHF 167

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                L + M   G+  D F +++ L A AG  + + G+ VH Y IR    +   + + +
Sbjct: 168 DKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRN--GIEEVLPVAN 225

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+EMY KCG + +A  +F+           KD + W +++G Y R+    E   L+  M
Sbjct: 226 ALMEMYVKCGYMEEARFIFDHV-------TKKDTISWNTLIGGYSRSNLANEAFTLFNEM 278

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L+   +P+ V    ++ A +    ++ G E   + V    LE      + LVD+  + G 
Sbjct: 279 LLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFV-ANALVDMYVKCGA 336

Query: 349 LDKAWKLINEMLDR 362
           L  A +L + + ++
Sbjct: 337 LLLARRLFDMLTNK 350



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 124/252 (49%), Gaps = 18/252 (7%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G  V  ++ K G+ +   V +ALI  YAK   I DA ++FDE+P ++ +  N+++ G   
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             L+   +EL   M   G + D  TL +++ AC     +  G  VH Y +R    L ++ 
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVR--TGLISET 120

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + ++L++MY  C       ++F      +E    K+VV WT+M+  Y R G+F +V  L
Sbjct: 121 SLGNALLDMYSNCSDWRSTNKIF----RNME---QKNVVSWTAMITSYTRAGHFDKVAGL 173

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLV 340
           ++ M + G +PD  A  + + A +    +K G       VH Y +  G E      + L+
Sbjct: 174 FQEMGLEGIRPDVFAITSALDAFAGNESLKHGKS-----VHGYAIRNGIEEVLPVANALM 228

Query: 341 DLLCRAGELDKA 352
           ++  + G +++A
Sbjct: 229 EMYVKCGYMEEA 240


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/423 (34%), Positives = 230/423 (54%), Gaps = 37/423 (8%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           +RL++ Y  C     L    N L  +  RN + +  +IS + +N  P  A + F  M   
Sbjct: 74  TRLVIMYARC---GALEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRA 130

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           GI                       KQV A   K+ +   +FVGS+L+D+YAK   I +A
Sbjct: 131 GIHQ--------------------VKQVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEA 170

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +FD +P ++ V   A+LSGY +  L    L+L RL+   G+  +  T +ALL A +GL
Sbjct: 171 RRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGL 230

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
           S+ ++G+QVH  ++R+   L   + +Q+SLI+MY KCG +  + +VF+    R       
Sbjct: 231 SSMDYGKQVHGLILRR--ELPFFMALQNSLIDMYSKCGKLLYSRRVFDSMPER------- 281

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
            VV W +ML  YGR+G   EV++L+ +M  +  KPD V  + V+S  SH G V  G++ F
Sbjct: 282 SVVSWNAMLMGYGRHGLAHEVVQLFRSMC-DEVKPDSVTLLAVLSGYSHGGLVDEGLDMF 340

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           + +V +       EHY C++DLL R+G+L KA  LI +M        + ++WG+LL AC 
Sbjct: 341 DHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKM----PFQPTRAIWGSLLGACR 396

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
                 +G+  AQK L+++P N G YV+LSN+YA   MW ++ ++R+LM +K + K+ G 
Sbjct: 397 VHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWKDVFRVRKLMLKKTVIKEPGR 456

Query: 441 SWI 443
           SW+
Sbjct: 457 SWM 459



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 152/325 (46%), Gaps = 44/325 (13%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
            ++T     +  R G+QV A +  +G+  ++++ + L+ +YA+   + DA  + D +P +
Sbjct: 40  DAITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPER 99

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N V   A++SGY + +      EL  +M               LR  AG+      +QVH
Sbjct: 100 NVVSWTAMISGYSQNERPDQAWELFIMM---------------LR--AGIHQV---KQVH 139

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           A+ ++   N    +F+ SSL++MY K   + +A +VF++   R       DVV +T++L 
Sbjct: 140 AFAVK--TNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPAR-------DVVSYTAILS 190

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y + G  +E + L+  +   G + ++V F  +++A S    +  G +     VH   L 
Sbjct: 191 GYTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQ-----VHGLILR 245

Query: 331 PGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG-KF 385
                +    + L+D+  + G+L  + ++ + M +R     SV  W A+L      G   
Sbjct: 246 RELPFFMALQNSLIDMYSKCGKLLYSRRVFDSMPER-----SVVSWNAMLMGYGRHGLAH 300

Query: 386 ELGKLAAQKALELDPHNVGIYVMLS 410
           E+ +L      E+ P +V +  +LS
Sbjct: 301 EVVQLFRSMCDEVKPDSVTLLAVLS 325


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/448 (32%), Positives = 242/448 (54%), Gaps = 18/448 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H+   + G+ L   +  Q+ L+  +++C   +    + + L  L  R+ + +N +IS +
Sbjct: 149 IHSSTLKLGVHLDVFV--QNALISAFSSCGAVEAARAVFDMLPAL-VRDVVSWNSMISGY 205

Query: 62  CRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
            ++     ALK F   +    +  D   L S+L+    +     GK++    T SG++  
Sbjct: 206 LQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLD 265

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           VFVGS+LID+Y+K   I DA  +FD IP +N+VC  ++++GY ++ L+   +EL R M  
Sbjct: 266 VFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQI 325

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G   D  T++ +L AC    A   GR +H Y  R    +  D+  +++LI MY KCG +
Sbjct: 326 GGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEM--DLNARNALIGMYSKCGDI 383

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM-LMNGTKPDEVA 299
            KAL++F+       G    D+  W++++     NG   + + L+  M +++  +P+E+ 
Sbjct: 384 QKALEIFH-------GLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEIT 436

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           F+ V+ AC+H G V  G+ YF  M   Y L PG EHY C+VDLL RA  L +A K I  +
Sbjct: 437 FLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTL 496

Query: 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419
             +      V +W +LL AC + G  EL + AA++  EL+P   G  V+LSN+YA    W
Sbjct: 497 PIQ----PDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRW 552

Query: 420 DEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            ++ ++R+ M  + +KK  GCS++E+ G
Sbjct: 553 GDVKRVRKDMATQRIKKQPGCSFVEIDG 580



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 162/360 (45%), Gaps = 26/360 (7%)

Query: 25  LPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL 84
           L Y +  H  +          ++  N   +N +   + R+  P   +  ++ M  +G   
Sbjct: 66  LLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLP 125

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D Y+    L A   +     G+++ +   K G    VFV +ALI  ++    +  A  +F
Sbjct: 126 DNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVF 185

Query: 145 DEIP--VKNSVCANALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLS 201
           D +P  V++ V  N+++SGY ++  +   L++   L+    L  D  TL + L  C  L 
Sbjct: 186 DMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLG 245

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
             + G+++H         L  DVF+ SSLI+MY KCG +  A +VF+   HR       +
Sbjct: 246 LLDLGKKIHGLFTGSGFVL--DVFVGSSLIDMYSKCGQIEDARKVFDRIPHR-------N 296

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
            V WTSM+  Y ++  FKE I+L+  M + G   D      V+SAC H G +  G     
Sbjct: 297 TVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG----R 352

Query: 322 WMVHDY----KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           W +H Y     +E      + L+ +  + G++ KA ++ +     G     +  W A++S
Sbjct: 353 W-IHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFH-----GLTQPDIFSWSAVIS 406



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 132/281 (46%), Gaps = 26/281 (9%)

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD---AELMFDEIP 148
           SL+   ++   R   Q+ +H   SG      V S L  LY  L   HD   +  +F +I 
Sbjct: 31  SLSLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKL--LYYSLSHDHDFAFSRTLFFQIH 88

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
             N    N +   Y  +   A  + L  LM   G   D+++   +L+ACA LS    GR+
Sbjct: 89  KPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGRE 148

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +H+  ++   +L  DVF+Q++LI  +  CG V  A  VF++        + +DVV W SM
Sbjct: 149 IHSSTLKLGVHL--DVFVQNALISAFSSCGAVEAARAVFDML-----PALVRDVVSWNSM 201

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           +  Y ++  ++  +K++  +L +G+  PDEV  V+ +S C   G + LG +        +
Sbjct: 202 ISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKI-------H 254

Query: 328 KLEPGPEHY------SCLVDLLCRAGELDKAWKLINEMLDR 362
            L  G          S L+D+  + G+++ A K+ + +  R
Sbjct: 255 GLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHR 295


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/400 (33%), Positives = 211/400 (52%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +N +I+   +NG     +  F+ M   G+  D +   S L A  +++   +G
Sbjct: 412 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG 471

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
             V   V KSG  S  FV S ++D+Y K  +I +A+ + D I  +  V  NA+LSG+   
Sbjct: 472 LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLN 531

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           K      +    M  +GL  DHFT + +L  CA L+  E G+Q+H  +I++   + +D +
Sbjct: 532 KESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQ--EMLDDEY 589

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L++MY KCG +  +L VF     R       D V W +M+  Y  +G   E ++++
Sbjct: 590 ISSTLVDMYAKCGDMPDSLLVFEKVEKR-------DFVSWNAMICGYALHGLGVEALRMF 642

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M      P+   FV V+ ACSH G    G  YF  M   YKLEP  EH++C+VD+L R
Sbjct: 643 ERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGR 702

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           +    +A K IN M       +   +W  LLS C      E+ +LAA   L LDP +  +
Sbjct: 703 SKGPQEAVKFINSM----PFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSV 758

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y++LSN+YA+   W ++ + R L+K+  LKK+ GCSWIEV
Sbjct: 759 YILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEV 798



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 184/384 (47%), Gaps = 34/384 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVV 57
            VHA   +TGL +   +   S L+  Y  CR      +L + L F   +  RN + +   
Sbjct: 170 QVHALAVKTGLEID--VRTGSALVDMYGKCR------SLDDALCFFYGMPERNWVSWGAA 221

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+   +N   +  L+ F  M   G+ +   +  S+  +  ++     G+Q+ AH  K+ +
Sbjct: 222 IAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKF 281

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            S   VG+A++D+YAK   + DA   F  +P      +NA++ G   A L    + L + 
Sbjct: 282 SSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQF 341

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M    + +D  +LS +  ACA       G+QVH   I+   ++  D+ + ++++++YGKC
Sbjct: 342 MIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDV--DICVNNAVLDLYGKC 399

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
             + +A  +F       +G   KD V W +++    +NG++ + I  +  ML  G KPD+
Sbjct: 400 KALMEAYLIF-------QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDD 452

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAW 353
             + +V+ AC+    ++ G+     MVHD  ++ G        S +VD+ C+ G +D+A 
Sbjct: 453 FTYGSVLKACAALRSLEYGL-----MVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQ 507

Query: 354 KLINEMLDRGHGSSSVSMWGALLS 377
           KL + +     G   V  W A+LS
Sbjct: 508 KLHDRI-----GGQQVVSWNAILS 526



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 168/365 (46%), Gaps = 27/365 (7%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY 87
           T   H  ++ T       +   + + +N ++S +C+ G    ++  F  M   G+  D  
Sbjct: 91  TAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRT 150

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
                L + +++++   G QV A   K+G    V  GSAL+D+Y K   + DA   F  +
Sbjct: 151 TFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGM 210

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           P +N V   A ++G  + + +  GLEL   M  LGL     + ++  R+CA +S    GR
Sbjct: 211 PERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGR 270

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV-FNLAGHRLEGEINKDVVLWT 266
           Q+HA+ I+      +D  + ++++++Y K   +T A +  F L  H +E      V L  
Sbjct: 271 QLHAHAIKN--KFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVR 328

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE-WMVH 325
           + LG+        E + L++ M+ +  + D V+   V SAC+ T        YF+   VH
Sbjct: 329 AGLGI--------EAMGLFQFMIRSSIRFDVVSLSGVFSACAETKG------YFQGQQVH 374

Query: 326 DYKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
              ++ G +   C    ++DL  +   L +A+ +   M  +     SVS W A+++A   
Sbjct: 375 CLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK----DSVS-WNAIIAALEQ 429

Query: 382 CGKFE 386
            G ++
Sbjct: 430 NGHYD 434


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/396 (33%), Positives = 216/396 (54%), Gaps = 14/396 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N V+++   +G PL  ++ +  +   G   +  ++C+   A   + +   G+Q 
Sbjct: 185 RNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQF 244

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K G+   V V ++++D Y K   +  A  +FD + V+N+V   +++  Y +    
Sbjct: 245 YGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAE 304

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                +       G +   F +S++L  CAGL   + GR +HA  +R C  + +++F+ S
Sbjct: 305 EEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSC--IDSNIFVAS 362

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MYGKCG +  A QVF     R       ++V W +M+G Y   G     + +++ M
Sbjct: 363 ALVDMYGKCGGIEDAEQVFFEMPQR-------NLVTWNAMIGGYAHIGDAHNALSVFDKM 415

Query: 289 LM-NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           +M   T P+ +  V V++ACS  G  K G E F+ M   + +EP  EHY+C+VDLLCRAG
Sbjct: 416 IMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAG 475

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
             ++A+K+I  M  R     S+S+WGALL  C   GK ELG++AA+K  ELDP + G +V
Sbjct: 476 MEERAYKIIQGMPMR----PSISVWGALLGGCKMHGKTELGRIAAEKLFELDPQDSGNHV 531

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           +LSN+ A    W E   +R+ MK  G+KKD G SWI
Sbjct: 532 LLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWI 567



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 164/365 (44%), Gaps = 32/365 (8%)

Query: 25  LPYTTCRHKKNLGT---LTNCLKFLNPRNPLP----FNVVISDFCRNGSPLYALKTFSFM 77
           LP   C H  NL +   L          +P P    +   IS   ++  PL AL  F+ M
Sbjct: 51  LPPFLCAHLVNLYSKLDLPGAAAASLAADPSPTVVSYTAFISGAAQHARPLQALSAFAAM 110

Query: 78  HVHGIFLDTYALCSSL-TASTSVKDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLL 135
              G+  + +   S+   A+++   +  G Q+ A   + G+L    FV  A +D+Y K  
Sbjct: 111 LRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRFGYLPDDAFVSCAALDMYFKTG 170

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR----LMPALGLDYDHFTLS 191
            +  A  +FDE+P +N V  NA+++    A L    LE V     L  A G+  +  ++ 
Sbjct: 171 CLALARRLFDEMPNRNVVAWNAVMT---NAVLDGRPLETVEAYFGLRGAGGMP-NVVSVC 226

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           A   ACAG++    G Q + ++ +  C  G DV + +S+++ YGKC  V KA  VF+  G
Sbjct: 227 AFFNACAGMTNLSLGEQFYGFVAK--CGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMG 284

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
            R       + V W SM+  Y +NG  +E   +Y      G +P +    +V++ C+   
Sbjct: 285 VR-------NNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLL 337

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            + LG       V    ++      S LVD+  + G ++ A ++  EM  R     ++  
Sbjct: 338 GLDLGRALHAVAVRSC-IDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQR-----NLVT 391

Query: 372 WGALL 376
           W A++
Sbjct: 392 WNAMI 396


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/400 (33%), Positives = 211/400 (52%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +N +I+   +NG     +  F+ M   G+  D +   S L A  +++   +G
Sbjct: 454 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG 513

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
             V   V KSG  S  FV S ++D+Y K  +I +A+ + D I  +  V  NA+LSG+   
Sbjct: 514 LMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLN 573

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           K      +    M  +GL  DHFT + +L  CA L+  E G+Q+H  +I++   + +D +
Sbjct: 574 KESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQ--EMLDDEY 631

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L++MY KCG +  +L VF     R       D V W +M+  Y  +G   E ++++
Sbjct: 632 ISSTLVDMYAKCGDMPDSLLVFEKVEKR-------DFVSWNAMICGYALHGLGVEALRMF 684

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M      P+   FV V+ ACSH G    G  YF  M   YKLEP  EH++C+VD+L R
Sbjct: 685 ERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGR 744

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           +    +A K IN M       +   +W  LLS C      E+ +LAA   L LDP +  +
Sbjct: 745 SKGPQEAVKFINSM----PFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSV 800

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y++LSN+YA+   W ++ + R L+K+  LKK+ GCSWIEV
Sbjct: 801 YILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEV 840



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 184/384 (47%), Gaps = 34/384 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVV 57
            VHA   +TGL +   +   S L+  Y  CR      +L + L F   +  RN + +   
Sbjct: 212 QVHALAVKTGLEID--VRTGSALVDMYGKCR------SLDDALCFFYGMPERNWVSWGAA 263

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+   +N   +  L+ F  M   G+ +   +  S+  +  ++     G+Q+ AH  K+ +
Sbjct: 264 IAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKF 323

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            S   VG+A++D+YAK   + DA   F  +P      +NA++ G   A L    + L + 
Sbjct: 324 SSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQF 383

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M    + +D  +LS +  ACA       G+QVH   I+   ++  D+ + ++++++YGKC
Sbjct: 384 MIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDV--DICVNNAVLDLYGKC 441

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
             + +A  +F       +G   KD V W +++    +NG++ + I  +  ML  G KPD+
Sbjct: 442 KALMEAYLIF-------QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDD 494

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAW 353
             + +V+ AC+    ++ G+     MVHD  ++ G        S +VD+ C+ G +D+A 
Sbjct: 495 FTYGSVLKACAALRSLEYGL-----MVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQ 549

Query: 354 KLINEMLDRGHGSSSVSMWGALLS 377
           KL + +     G   V  W A+LS
Sbjct: 550 KLHDRI-----GGQQVVSWNAILS 568



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 168/365 (46%), Gaps = 27/365 (7%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY 87
           T   H  ++ T       +   + + +N ++S +C+ G    ++  F  M   G+  D  
Sbjct: 133 TAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRT 192

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
                L + +++++   G QV A   K+G    V  GSAL+D+Y K   + DA   F  +
Sbjct: 193 TFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGM 252

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           P +N V   A ++G  + + +  GLEL   M  LGL     + ++  R+CA +S    GR
Sbjct: 253 PERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGR 312

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV-FNLAGHRLEGEINKDVVLWT 266
           Q+HA+ I+      +D  + ++++++Y K   +T A +  F L  H +E      V L  
Sbjct: 313 QLHAHAIKN--KFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVR 370

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE-WMVH 325
           + LG+        E + L++ M+ +  + D V+   V SAC+ T        YF+   VH
Sbjct: 371 AGLGI--------EAMGLFQFMIRSSIRFDVVSLSGVFSACAETKG------YFQGQQVH 416

Query: 326 DYKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
              ++ G +   C    ++DL  +   L +A+ +   M  +     SVS W A+++A   
Sbjct: 417 CLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK----DSVS-WNAIIAALEQ 471

Query: 382 CGKFE 386
            G ++
Sbjct: 472 NGHYD 476



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 10/230 (4%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           + ++  Y+    I  A  +FD +P  + V  NAL+SGYC+  ++   ++L   M   G+ 
Sbjct: 129 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 188

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D  T + LL++C+ L     G QVHA  ++    L  DV   S+L++MYGKC  +  AL
Sbjct: 189 PDRTTFAVLLKSCSALEELSLGVQVHALAVKT--GLEIDVRTGSALVDMYGKCRSLDDAL 246

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
             F        G   ++ V W + +    +N  +   ++L+  M   G    + ++ +  
Sbjct: 247 CFFY-------GMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAF 299

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
            +C+    +  G +     + + K        + +VD+  +A  L  A +
Sbjct: 300 RSCAAMSCLNTGRQLHAHAIKN-KFSSDRVVGTAIVDVYAKANSLTDARR 348


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 142/414 (34%), Positives = 222/414 (53%), Gaps = 18/414 (4%)

Query: 37  GTLTNCLKFLN---PRNPLPFNVVISDFCRNGS-PLYALKTFSFMHVHG-IFLDTYALCS 91
           G++ +C K  +     + + +  +I+ + +N +    A+  FS M   G +  + +   S
Sbjct: 319 GSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSS 378

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           +  A  +V D R GKQV  H  K G  S+  V +++I ++ K   + DA   F+ +  KN
Sbjct: 379 AFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKN 438

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N  L G C    +    EL+  +    L    FT ++LL   A + +   G Q+H+
Sbjct: 439 LVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHS 498

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            +++   +    V   ++LI MY KCG +  A +VF+L         N++V+ WTSM+  
Sbjct: 499 QVLKLGLSCNQPVC--NALISMYSKCGSIDTASRVFSLMD-------NRNVISWTSMITG 549

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           + ++G+ + V++ +  M   G KP+EV +V ++SACSH G V  G  +F  M  D+K++P
Sbjct: 550 FAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
             EHY+C+VDLLCRAG L  A++ IN M       + V +W   L AC      ELGKLA
Sbjct: 610 KMEHYACMVDLLCRAGLLTDAFEFINTM----PFQADVLVWRTFLGACRVHSNTELGKLA 665

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A+K LE DP+    Y+ LSN+YA    W+E  ++R  MKE+ L K+ GCSWIEV
Sbjct: 666 ARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERNLVKEGGCSWIEV 719



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 187/427 (43%), Gaps = 56/427 (13%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + ++ +++ F  NG    A+K F      G+  + Y   + + A ++      G+ +
Sbjct: 129 RDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVI 188

Query: 109 QAHVTKSG-WLSSVFVGSALIDLYAK-LLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
              + K+G + S V VG +LID++ K      +A  +FD++   N V    +++   +  
Sbjct: 189 LGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMG 248

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                +     M   G + D FTLS++  ACA L     GRQ+H++ IR    L +DV  
Sbjct: 249 FPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHSWAIRS--GLADDV-- 304

Query: 227 QSSLIEMYGKC---GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN-GYFKEVI 282
           + SL++MY KC   G V    +VF+    R++   +  V+ WT+++  Y +N     E I
Sbjct: 305 ECSLVDMYAKCSADGSVDDCRKVFD----RMQ---DHSVMSWTALITGYMQNCNLATEAI 357

Query: 283 KLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL------------ 329
            L+  M+  G  +P+   F +   AC +    ++G +    + H +K             
Sbjct: 358 NLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQV---LGHAFKRGLASNSSVSNSV 414

Query: 330 ---------------------EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
                                E     Y+  +D  CR  + + A++L++E+ +R  G S+
Sbjct: 415 ISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSA 474

Query: 369 VSMWGALLSACHDCGKFELGKLAAQKALELDPH-NVGIYVMLSNLYAKFCMWDEIGQLRE 427
            + + +LLS   + G    G+    + L+L    N  +   L ++Y+K    D   ++  
Sbjct: 475 FT-FASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFS 533

Query: 428 LMKEKGL 434
           LM  + +
Sbjct: 534 LMDNRNV 540



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 13/231 (5%)

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGL-DYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
           A+ L+  +  A    G +  + LM   G+   D  T S+LL++C        G+ VHA +
Sbjct: 29  ADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARL 88

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           I     +  D  + +SLI +Y K G +TKA  VF   G   +    +DVV W++M+  +G
Sbjct: 89  IE--FEIEPDSVLYNSLISLYSKSGDLTKAKDVFETMGRFGK----RDVVSWSAMMACFG 142

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            NG   + IKL+   L  G  P++  +  VI ACS++  V +G     +++     E   
Sbjct: 143 NNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDV 202

Query: 334 EHYSCLVDLLCRA-GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
                L+D+  +     + A+K+ ++M +      +V  W  +++ C   G
Sbjct: 203 CVGCSLIDMFVKGENSFENAYKVFDKMSEL-----NVVTWTLMITRCMQMG 248



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 149/333 (44%), Gaps = 22/333 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + + ++I+   + G P  A++ F  M + G   D + L S  +A   +++   G+Q+ 
Sbjct: 233 NVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLH 292

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEIPVKNSVCANALLSGYCE-A 165
           +   +SG      V  +L+D+YAK      + D   +FD +   + +   AL++GY +  
Sbjct: 293 SWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNC 350

Query: 166 KLWAGGLELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            L    + L   M   G ++ +HFT S+  +AC  +S    G+QV  +  ++   L ++ 
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKR--GLASNS 408

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + +S+I M+ KC  +  A   F       E    K++V + + L    RN  F+   +L
Sbjct: 409 SVSNSVISMFVKCDRMEDARTAF-------ESLSEKNLVSYNTFLDGTCRNLDFEHAFEL 461

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
              +           F +++S  ++ G ++ G E     V    L       + L+ +  
Sbjct: 462 LSEIAERELGVSAFTFASLLSGVANVGSLRKG-EQIHSQVLKLGLSCNQPVCNALISMYS 520

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + G +D A ++ + M +R     +V  W ++++
Sbjct: 521 KCGSIDTASRVFSLMDNR-----NVISWTSMIT 548


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 144/398 (36%), Positives = 220/398 (55%), Gaps = 13/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  VI+ + +N      L  F  M   G   +   L S L A   ++    GK +
Sbjct: 192 RNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLI 251

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +  K G    V + +ALI LY K   +  A  +FD + V+N V  NA+++ Y +    
Sbjct: 252 HGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAG 311

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
           A  ++L R M A  +D+D+ T+ +++ ACA L A   GR +H  + RK   L  +V + +
Sbjct: 312 ANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRK--GLEINVSITN 369

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG +  A +VF     RL     + VV WTSM+G    +G+ ++ +KL+  M
Sbjct: 370 ALIDMYAKCGNIDLAREVF----ERLPC---RSVVSWTSMIGACASHGHGEDALKLFSRM 422

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G KP+   F  V +AC H+G V+ G ++FE M+ DY + PG EH +C+VDLL RAG 
Sbjct: 423 KDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGS 482

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A++ I++M         VS+WGALL +C      EL +L A+K   LDP  V  YV+
Sbjct: 483 LMEAYEFIDKM----PVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVL 538

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +SN+YA+   W++  +LR+LM+E+ LKK  G S +EV 
Sbjct: 539 MSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVN 576



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 166/338 (49%), Gaps = 15/338 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +N +I  +   G    AL  +S MH  G+F D Y     + +   +   R GK+V
Sbjct: 91  RDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEV 150

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             ++ K G+ S VFV S+L+ +Y++       EL+F E+ V+N V   A+++GY + + +
Sbjct: 151 HCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYF 210

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GL + R M   G   +  TL ++L ACAGL     G+ +H Y I+    +  DV + +
Sbjct: 211 KEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIK--LGVDPDVSLTN 268

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI +YGKCG V  A  +F       +G + +++V W +M+  Y +N      +KL+  M
Sbjct: 269 ALIALYGKCGNVETARSLF-------DGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRM 321

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                  D +  V+VISAC+  G +  G  +   +V    LE      + L+D+  + G 
Sbjct: 322 QAEKVDFDYITMVSVISACASLGALNTG-RWMHELVKRKGLEINVSITNALIDMYAKCGN 380

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           +D A ++   +  R     SV  W +++ AC   G  E
Sbjct: 381 IDLAREVFERLPCR-----SVVSWTSMIGACASHGHGE 413



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 165/351 (47%), Gaps = 62/351 (17%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD-AELMFDEIPVKNSVCANALLSGYCEA 165
           ++ A V  +G   ++ + + LI     L    D A  MFD++P ++    N L+ GY +A
Sbjct: 47  RIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADA 106

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L L   M   GL  D++T   ++R+CA LSA   G++VH  +++      +DVF
Sbjct: 107 GPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKH--GFDSDVF 164

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE-INKDVVLWTSMLGVYGRNGYFKEVIKL 284
           +QSSL+ MY + G       VF        GE + +++V WT+++  Y +N YFKE + +
Sbjct: 165 VQSSLVAMYSQSGETLGMELVF--------GEMVVRNIVSWTAVIAGYVQNRYFKEGLGV 216

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW--MVHDYKL----EPGPEHYSC 338
           +  M+ +GT+P+ V  V+V+ AC+       G+E+     ++H Y +    +P     + 
Sbjct: 217 FREMVGSGTQPNAVTLVSVLPACA-------GLEFLNLGKLIHGYGIKLGVDPDVSLTNA 269

Query: 339 LVDLLCRAGELDKAWKLINEML---------------DRGHGSSSVSMWG---------- 373
           L+ L  + G ++ A  L + M+                   G+++V ++           
Sbjct: 270 LIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFD 329

Query: 374 -----ALLSACHDCGKFELGK----LAAQKALELDPHNVGIYVMLSNLYAK 415
                +++SAC   G    G+    L  +K LE+   NV I   L ++YAK
Sbjct: 330 YITMVSVISACASLGALNTGRWMHELVKRKGLEI---NVSITNALIDMYAK 377



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 109/236 (46%), Gaps = 7/236 (2%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           N+ T  +    +  +N + +N +I+ + +N +   A+K F  M    +  D   + S ++
Sbjct: 279 NVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVIS 338

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A  S+     G+ +   V + G   +V + +ALID+YAK   I  A  +F+ +P ++ V 
Sbjct: 339 ACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVS 398

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
             +++            L+L   M   G+  + FT +A+  AC      E GR+    M+
Sbjct: 399 WTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMM 458

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           R   ++   V   + ++++ G+ G + +A +  +      +  +  DV +W ++LG
Sbjct: 459 RD-YSIMPGVEHCACMVDLLGRAGSLMEAYEFID------KMPVEPDVSVWGALLG 507


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 143/412 (34%), Positives = 220/412 (53%), Gaps = 17/412 (4%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           L T    L+ L   + + +  +I+ + ++     ALK F  M   GI  D     S+++A
Sbjct: 466 LDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISA 525

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
              ++    G+Q+ A    SG+   + +G+AL+ LYA+     DA L F++I  K+++  
Sbjct: 526 CAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISW 585

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           NAL+SG+ ++      L++   M   G++ + FT  + + A A  +  + G+Q+HA MI+
Sbjct: 586 NALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIK 645

Query: 216 KCCNLGNDVFMQSS--LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
                G D   ++S  LI +Y KCG +  A + F            K+VV W +M+  Y 
Sbjct: 646 T----GYDSETEASNVLITLYSKCGSIEDAKREFFEMPE-------KNVVSWNAMITGYS 694

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           ++GY  E + L+E M   G  P+ V FV V+SACSH G V  G+ YF  M  ++ L P P
Sbjct: 695 QHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKP 754

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHY C+VDLL RA  L  A + I EM           +W  LLSAC      E+G+ AA+
Sbjct: 755 EHYVCVVDLLGRAALLCCAREFIEEMPIE----PDAMIWRTLLSACTVHKNIEIGEFAAR 810

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             LEL+P +   YV+LSN+YA    WD   + R++MK++G+KK+ G SWIEV
Sbjct: 811 HLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEV 862



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 167/333 (50%), Gaps = 23/333 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +IS   +NG    A+  F  MH   +    Y   S L+A T ++  + G+Q+
Sbjct: 176 KDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQL 235

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G  S  FV +AL+ LY++   +  AE +F ++  ++ +  N+L+SG  +    
Sbjct: 236 HGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFS 295

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M    +  D  T+++LL ACA + A   G+Q+H+Y+I+    + +D+ ++ 
Sbjct: 296 DRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIK--MGMSSDLIIEG 353

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL+++Y KC  +  A + F      L  E  ++VVLW  ML  YG+ G   E   ++  M
Sbjct: 354 SLLDLYVKCFDIETAHEYF------LTTE-TENVVLWNVMLVAYGQLGNLSESYWIFLQM 406

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH--YSC--LVDLLC 344
            + G  P++  + +++  C+  G + LG +     +H   ++ G +   Y C  L+D+  
Sbjct: 407 QIEGLMPNQYTYPSILRTCTSLGALDLGEQ-----IHTQVIKSGFQFNVYVCSVLIDMYA 461

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + GELD A  ++  + +       V  W A+++
Sbjct: 462 KHGELDTARGILQRLREE-----DVVSWTAMIA 489



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 186/388 (47%), Gaps = 17/388 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
            N + +NV++  + + G+   +   F  M + G+  + Y   S L   TS+     G+Q+
Sbjct: 378 ENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQI 437

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V KSG+  +V+V S LID+YAK   +  A  +   +  ++ V   A+++GY +  L+
Sbjct: 438 HTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLF 497

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
           A  L+L + M   G+  D+   S+ + ACAG+ A   G+Q+HA           D+ + +
Sbjct: 498 AEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQ--SYISGYSEDLSIGN 555

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+ +Y +CG    A     LA  +++    KD + W +++  + ++G+ +E ++++  M
Sbjct: 556 ALVSLYARCGRAQDAY----LAFEKIDA---KDNISWNALISGFAQSGHCEEALQVFSQM 608

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G + +   F + +SA ++T  +K G +    M+     +   E  + L+ L  + G 
Sbjct: 609 NQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKT-GYDSETEASNVLITLYSKCGS 667

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIY 406
           ++ A +   EM ++     +V  W A+++  + H  G   +      K L L P++V   
Sbjct: 668 IEDAKREFFEMPEK-----NVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFV 722

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGL 434
            +LS       + + +   R + KE GL
Sbjct: 723 GVLSACSHVGLVNEGLSYFRSMSKEHGL 750



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 156/357 (43%), Gaps = 25/357 (7%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           NL         ++ R+ + +N +IS   + G    AL+ F  M +  +  D   + S L+
Sbjct: 263 NLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLS 322

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A  SV     GKQ+ ++V K G  S + +  +L+DLY K   I  A   F     +N V 
Sbjct: 323 ACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVL 382

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            N +L  Y +    +    +   M   GL  + +T  ++LR C  L A + G Q+H  +I
Sbjct: 383 WNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVI 442

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           +       +V++ S LI+MY K G +  A  +      RL  E   DVV WT+M+  Y +
Sbjct: 443 KSGFQF--NVYVCSVLIDMYAKHGELDTARGIL----QRLREE---DVVSWTAMIAGYTQ 493

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----HTGQVKLGIEYFEWMVHDYKL 329
           +  F E +KL++ M   G + D + F + ISAC+     + GQ      Y      D  +
Sbjct: 494 HDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSI 553

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
                  + LV L  R G    A+ L  E +D     S    W AL+S     G  E
Sbjct: 554 G------NALVSLYARCGRAQDAY-LAFEKIDAKDNIS----WNALISGFAQSGHCE 599



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 124/261 (47%), Gaps = 15/261 (5%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            K++ A + KSG+     +GS LID+Y     + +A  +FD+IP  N    N ++SG   
Sbjct: 29  AKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLA 88

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGND 223
            KL +  L L  LM    +  D  T +++LRAC+G  A  +   Q+HA +I      G+ 
Sbjct: 89  KKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHH--GFGSS 146

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
             + + LI++Y K G V  A  VF       E    KD V W +M+    +NG   E I 
Sbjct: 147 PLVCNPLIDLYSKNGHVDLAKLVF-------ERLFLKDSVSWVAMISGLSQNGREDEAIL 199

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVD 341
           L+  M  +   P    F +V+SAC+     KLG +   ++V   K     E + C  LV 
Sbjct: 200 LFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV---KWGLSSETFVCNALVT 256

Query: 342 LLCRAGELDKAWKLINEMLDR 362
           L  R G L  A ++ ++M  R
Sbjct: 257 LYSRWGNLIAAEQIFSKMHRR 277


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 141/421 (33%), Positives = 224/421 (53%), Gaps = 28/421 (6%)

Query: 40  TNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
            +  + L  ++   +N +I    RNG    AL+    M   G   +      +L  ++S+
Sbjct: 474 VDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSL 533

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP----------- 148
                GKQ+   V K G L   FV ++LID+Y K   +  A ++F  +P           
Sbjct: 534 SVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEES 593

Query: 149 ----VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
               V  SV  ++++SGY +   +   L+    M    ++ D FTL++++ ACA     E
Sbjct: 594 CDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLE 653

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            GRQVH Y I+K  + G DVF+ SS+I+MY KCG +  A  +FN A  R       +VVL
Sbjct: 654 LGRQVHGY-IQKIGH-GLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDR-------NVVL 704

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           WTSM+     +G  +E ++L+E M+  G  P+EV+FV V++ACSH G ++ G +YF  M 
Sbjct: 705 WTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMR 764

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
             Y + PG EH++C+VDL  RAG L++    I E +     S   S+W + LS+C     
Sbjct: 765 EVYGIRPGAEHFTCMVDLYGRAGRLNE----IKEFIHNNAISKLSSVWRSFLSSCRVHKN 820

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            E+G    +K LEL+P + G Y++ S++ A    W+E  ++R LM+++G+KK+   SWI+
Sbjct: 821 IEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQ 880

Query: 445 V 445
           +
Sbjct: 881 L 881



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 180/390 (46%), Gaps = 56/390 (14%)

Query: 34  KNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           +NL       + +   +   + V+IS F R G     L  F+ M   G+  + + L   L
Sbjct: 335 QNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVL 394

Query: 94  TA-STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
            + S++V D+R GK +   + ++G      + ++++D Y K      AE +F  +  K++
Sbjct: 395 KSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDT 454

Query: 153 VCANALLSGYCE------------------AKLWAG-------------GLELVRLMPAL 181
           V  N ++S Y +                  A  W                LEL+  M A 
Sbjct: 455 VSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAA 514

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G  ++  T S  L   + LS    G+Q+H  +++    + +D F+++SLI+MY KCG + 
Sbjct: 515 GPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLK--VGVLDDGFVRNSLIDMYCKCGEME 572

Query: 242 KALQVFN---LAGHRLEGEINKD-----VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           KA  +F         +  E + D      V W+SM+  Y +NG F++ +K +  M+ +  
Sbjct: 573 KASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQV 632

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--KLEPGPEHY--SCLVDLLCRAGEL 349
           + D+    +V+SAC+  G ++LG +     VH Y  K+  G + +  S ++D+  + G L
Sbjct: 633 EVDKFTLTSVVSACASAGVLELGRQ-----VHGYIQKIGHGLDVFLGSSIIDMYVKCGSL 687

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           + AW + N+  DR     +V +W +++S C
Sbjct: 688 NDAWLIFNQAKDR-----NVVLWTSMISGC 712



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 118/254 (46%), Gaps = 28/254 (11%)

Query: 124 GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL 183
           G+ L++LYAK   +  A  MF+EIP  +      L+SG+    L A  L L   M   G+
Sbjct: 324 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383

Query: 184 DYDHFTLSALLRACAG-LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
             + FTLS +L++C+  ++ +  G+ +H +++R   +L  D  + +S+++ Y KC     
Sbjct: 384 CPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDL--DAVLNNSILDYYVKCRCFGY 441

Query: 243 ALQVFNLAGHR-----------------LEGEIN-------KDVVLWTSMLGVYGRNGYF 278
           A ++F L   +                 ++  ++       KD   W +M+    RNG  
Sbjct: 442 AEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCE 501

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           +  ++L   M+  G   +++ F   +   S    + LG +    ++    L+ G    S 
Sbjct: 502 RVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNS- 560

Query: 339 LVDLLCRAGELDKA 352
           L+D+ C+ GE++KA
Sbjct: 561 LIDMYCKCGEMEKA 574


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 138/430 (32%), Positives = 233/430 (54%), Gaps = 23/430 (5%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLN--PR-NPLPFNVVISDFCRNGSPLYALKTFSFM 77
           S L+  Y+ C      G + + ++  +  PR + + ++ +++ F   G P+ AL  +S M
Sbjct: 150 SALLHVYSRC------GAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRM 203

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
             HG+  D   +   + A T   + R G  V     + G    V + ++L+D+YAK    
Sbjct: 204 REHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHF 263

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
             A  +F  +P +N+V  NAL+SG+ +       L+L R M   GL  D   L + L AC
Sbjct: 264 DVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLAC 323

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A +   + G+ +H +++R+   L     + +++++MY KCG +  A ++FN    R    
Sbjct: 324 ADVGFLKLGKSIHGFILRR---LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSR---- 376

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              D+VLW +M+   G +G   + + L++ +   G KPD   F +++SA SH+G V+ G 
Sbjct: 377 ---DLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGK 433

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            +F+ M+ ++ +EP  +H  C+VDLL R+G +++A    NEML   H   ++ +W ALLS
Sbjct: 434 FWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEA----NEMLASMHTEPTIPIWVALLS 489

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
            C +  K ELG+  A+K LE  P ++G+  ++SNLYA    WD++ ++R+LMK+ G KK 
Sbjct: 490 GCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKV 549

Query: 438 VGCSWIEVTG 447
            G S IEV G
Sbjct: 550 PGYSLIEVHG 559



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 173/369 (46%), Gaps = 20/369 (5%)

Query: 47  NPRNPLP-FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           + R+ +P +N +++   R GSP  AL+ F  +       D+     +LTA   + D    
Sbjct: 72  SSRSCIPAWNALLAARSRAGSPGAALRVFRAL-PSSARPDSTTFTLALTACARLGDLDAA 130

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + V+     +G+   VFV SAL+ +Y++   + DA  +FD +P K+ V  + +++G+  A
Sbjct: 131 EAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSA 190

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L +   M   G+  D   +  +++AC        G  VH   +R    +  DV 
Sbjct: 191 GRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRM--DVV 248

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +SL++MY K G    A QVF +  +R       + V W +++  + +NG+  E + L+
Sbjct: 249 IATSLVDMYAKNGHFDVARQVFRMMPYR-------NAVSWNALISGFAQNGHADEALDLF 301

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M  +G +PD  A V+ + AC+  G +KLG     +++   +LE      + ++D+  +
Sbjct: 302 REMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILR--RLEFQCILGTAVLDMYSK 359

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNV 403
            G L+ A KL N++  R      + +W A+++ C  H CG   L          + P + 
Sbjct: 360 CGSLESARKLFNKLSSR-----DLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHA 414

Query: 404 GIYVMLSNL 412
               +LS L
Sbjct: 415 TFASLLSAL 423


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/402 (34%), Positives = 222/402 (55%), Gaps = 14/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ +N + +N +I+ + ++     AL TF  +   GI  ++    S L    S      G
Sbjct: 474 ISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG 533

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V   + K+G  S + V +AL+ ++     +  A+ +F+++P ++ V  N +++G+ + 
Sbjct: 534 KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQH 593

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                  +  ++M   G+  D  T + LL ACA   A   GR++HA +     +   DV 
Sbjct: 594 GKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDC--DVL 651

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + + LI MY KCG +  A QVF    H+L     K+V  WTSM+  Y ++G  KE ++L+
Sbjct: 652 VGTGLISMYTKCGSIEDAHQVF----HKLP---KKNVYSWTSMITGYAQHGRGKEALELF 704

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M   G KPD + FV  +SAC+H G ++ G+ +F+ M  ++ +EP  EHY C+VDL  R
Sbjct: 705 YQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGR 763

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L++A + I +M           +WGALL AC      EL + AAQK LELDP++ G+
Sbjct: 764 AGLLNEAVEFIIKM----QVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGV 819

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +V+LSN+YA   MW E+ ++R++M ++G+ K  G SWIEV G
Sbjct: 820 FVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDG 861



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 165/337 (48%), Gaps = 23/337 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++   +N+++  + ++G    A K    M    +  D     S L A    ++   G
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKG 230

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +++   + K+GW + +FVG+ALI+++ K   I DA  +FD +P ++ V   ++++G    
Sbjct: 231 RELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARH 290

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +     L + M   G+  D     +LLRAC    A E G++VHA M  K      +++
Sbjct: 291 GRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM--KEVGWDTEIY 348

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++++ MY KCG +  AL+VF+L   R       +VV WT+M+  + ++G   E    +
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGR-------NVVSWTAMIAGFAQHGRIDEAFLFF 401

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVD 341
             M+ +G +P+ V F++++ ACS    +K G +     + D+ +E G        + L+ 
Sbjct: 402 NKMIESGIEPNRVTFMSILGACSSPSALKRGQQ-----IQDHIIEAGYGSDDRVRTALLS 456

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +  + G L  A ++  ++        +V  W A+++A
Sbjct: 457 MYAKCGSLKDAHRVFEKI-----SKQNVVAWNAMITA 488



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 174/369 (47%), Gaps = 19/369 (5%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           ++G  T     L  R+ + +  +I+   R+G    A   F  M   G+  D  A  S L 
Sbjct: 261 DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLR 320

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A    +    GK+V A + + GW + ++VG+A++ +Y K   + DA  +FD +  +N V 
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
             A+++G+ +             M   G++ +  T  ++L AC+  SA + G+Q+  ++I
Sbjct: 381 WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
                 G+D  ++++L+ MY KCG +  A +VF       E    ++VV W +M+  Y +
Sbjct: 441 E--AGYGSDDRVRTALLSMYAKCGSLKDAHRVF-------EKISKQNVVAWNAMITAYVQ 491

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +  +   +  ++A+L  G KP+   F ++++ C  +  ++LG ++  +++    LE    
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-KWVHFLIMKAGLESDLH 550

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK----FELGKL 390
             + LV +    G+L  A  L N+M  R      +  W  +++     GK    F+  K+
Sbjct: 551 VSNALVSMFVNCGDLMSAKNLFNDMPKR-----DLVSWNTIIAGFVQHGKNQVAFDYFKM 605

Query: 391 AAQKALELD 399
             +  ++ D
Sbjct: 606 MQESGIKPD 614



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 183/377 (48%), Gaps = 31/377 (8%)

Query: 42  CLKFLNPRNPLPFNVVISDFCRNGS---PLYALKTFSFMHVHGIFLDTYALCSSLTASTS 98
           C+ F + ++    N V++   + G     +  L+     H+  I+  TY+  + L     
Sbjct: 66  CVVFADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQ-IYRQTYS--ALLQLCIK 122

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
            K+   G+++  H+ KSG    +F+ + LI++YAK      A+ +FD++  K+    N L
Sbjct: 123 FKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLL 182

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           L GY +  L+    +L   M    +  D  T  ++L ACA     + GR+++  +++   
Sbjct: 183 LGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK--A 240

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
               D+F+ ++LI M+ KCG +  A +VF+    R       D+V WTSM+    R+G F
Sbjct: 241 GWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR-------DLVTWTSMITGLARHGRF 293

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY 336
           K+   L++ M   G +PD+VAFV+++ AC+H   ++ G +     VH    E G   E Y
Sbjct: 294 KQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKK-----VHARMKEVGWDTEIY 348

Query: 337 --SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
             + ++ +  + G ++ A     E+ D   G + VS W A+++     G+ +   L   K
Sbjct: 349 VGTAILSMYTKCGSMEDAL----EVFDLVKGRNVVS-WTAMIAGFAQHGRIDEAFLFFNK 403

Query: 395 ALE--LDPHNVGIYVML 409
            +E  ++P+ V    +L
Sbjct: 404 MIESGIEPNRVTFMSIL 420



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 154/310 (49%), Gaps = 20/310 (6%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVI 58
           VHA   E G      I   + ++  YT C      G++ + L+  +    RN + +  +I
Sbjct: 334 VHARMKEVGW--DTEIYVGTAILSMYTKC------GSMEDALEVFDLVKGRNVVSWTAMI 385

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           + F ++G    A   F+ M   GI  +     S L A +S    + G+Q+Q H+ ++G+ 
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S   V +AL+ +YAK   + DA  +F++I  +N V  NA+++ Y + + +   L   + +
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              G+  +  T +++L  C    + E G+ VH ++I K   L +D+ + ++L+ M+  CG
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELGKWVH-FLIMK-AGLESDLHVSNALVSMFVNCG 563

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A  +FN    R       D+V W +++  + ++G  +     ++ M  +G KPD++
Sbjct: 564 DLMSAKNLFNDMPKR-------DLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKI 616

Query: 299 AFVTVISACS 308
            F  +++AC+
Sbjct: 617 TFTGLLNACA 626



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 8/236 (3%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +L +  N    +  R+ + +N +I+ F ++G    A   F  M   GI  D       L 
Sbjct: 564 DLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLN 623

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A  S +    G+++ A +T++ +   V VG+ LI +Y K   I DA  +F ++P KN   
Sbjct: 624 ACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYS 683

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
             ++++GY +       LEL   M   G+  D  T    L ACA     E G  +H +  
Sbjct: 684 WTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG--LHHFQS 741

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            K  N+   +     +++++G+ GL+ +A++        ++ ++  D  +W ++LG
Sbjct: 742 MKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFI------IKMQVEPDSRVWGALLG 791


>gi|125525521|gb|EAY73635.1| hypothetical protein OsI_01524 [Oryza sativa Indica Group]
          Length = 560

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 218/397 (54%), Gaps = 17/397 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R    +  +I+ + R G     L+ F  M   G+ L T+A   +L A T V D   G+Q+
Sbjct: 135 RTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQL 194

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K     ++ V ++LID+Y     I DA  +FD  P +N +  N +++GY +    
Sbjct: 195 HLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCD-- 252

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L  ++L+  +  + + FTL+++  ACA L+A   G+QVH  ++R+  +  +D+ M +
Sbjct: 253 --PLMALQLLLEMNDEPNCFTLTSITSACADLAALRCGKQVHGAVLRR--SYSDDLQMGN 308

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +T A  VF+  G        KD   WTSM+  YG NGY  E ++L+ +M
Sbjct: 309 ALVDMYSKCGSITNAKNVFDRMG-------CKDKFSWTSMIAGYGMNGYGNEAVQLFSSM 361

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           +  G  PD V F+++IS+CSH G V  G  +F  M+++Y L+P  E Y  +V+LL RAG 
Sbjct: 362 IHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGR 421

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A  LI+ M      +    +WGALL A       E+G+LAA+K  E++P +V  Y+M
Sbjct: 422 LREALDLIDTM----PFAPDEYVWGALLGASKMHNNVEMGRLAARKITEINPDDVKNYIM 477

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L+++YA    W E    R  ++  G +K+ G SWIEV
Sbjct: 478 LASIYAAGSKWGEYAFTRRSLRGIGSRKEAGISWIEV 514



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 134/313 (42%), Gaps = 16/313 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  ++S +  NG    AL  F  M   G   + Y L S LTA            +
Sbjct: 32  RDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTACRGPCAPAMAMPL 91

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCA-NALLSGYCEAK 166
            A   + G     +V +ALID YA L   + DA  +FD +    +  +  ++++GY    
Sbjct: 92  HAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSGRTAASWTSMIAGYARWG 151

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
               GL L + M   G++   F  S  L AC  +     G+Q+H   I+K  ++  ++ +
Sbjct: 152 QERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQLHLQCIKKALDV--NLAV 209

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +SLI+MY  C  +  A  +F       +G   ++++ W +M+  Y +      +  L E
Sbjct: 210 VNSLIDMYCTCARILDARSLF-------DGTPERNLITWNTMIAGYSQCDPLMALQLLLE 262

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
              MN  +P+     ++ SAC+    ++ G +     V         +  + LVD+  + 
Sbjct: 263 ---MN-DEPNCFTLTSITSACADLAALRCG-KQVHGAVLRRSYSDDLQMGNALVDMYSKC 317

Query: 347 GELDKAWKLINEM 359
           G +  A  + + M
Sbjct: 318 GSITNAKNVFDRM 330



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 115/261 (44%), Gaps = 19/261 (7%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FDE+P ++ V   A+LSGY    L    L++ R M A G   + +TLS++L AC G
Sbjct: 22  ARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTACRG 81

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL-VTKALQVFNLAGHRLEGEI 258
             A      +HA  +R+   +    ++ ++LI+ Y      V  A ++F+  G       
Sbjct: 82  PCAPAMAMPLHAVAVRR--GVDRMPYVVNALIDSYASLAEGVVDARRLFDALGS------ 133

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            +    WTSM+  Y R G  +  ++L++ ML +G +    A    + AC+    + LG +
Sbjct: 134 GRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLG-Q 192

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
                     L+      + L+D+ C    +  A  L +   +R     ++  W  +++ 
Sbjct: 193 QLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPER-----NLITWNTMIAG 247

Query: 379 CHDCGKFELGKLAAQKALELD 399
              C       +A Q  LE++
Sbjct: 248 YSQCDPL----MALQLLLEMN 264


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 145/411 (35%), Positives = 225/411 (54%), Gaps = 13/411 (3%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           ++GT     +     N + ++ VIS+  ++G P  AL+ F    +     D+  L + L 
Sbjct: 367 DMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLR 426

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A +S+     G Q+    TK G++S VFVGSAL+DLYAK   +  ++ +F  +  K+ V 
Sbjct: 427 ACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVS 486

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            NAL+SGY + +     L+  R M    +  +  T++ +L  CA LS     ++VH Y+I
Sbjct: 487 WNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLI 546

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           R+   LG+ V + +SLI  Y KCG +  +L  F       E    ++ V W S++   G 
Sbjct: 547 RQ--GLGSTVLVSNSLIATYAKCGDINSSLYTF-------EKMPERNDVSWNSIILGMGM 597

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +    E+I L++ M+ +G KPD V F  ++SACSH G+V  G +YF+ MV D+ L+P  E
Sbjct: 598 HSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLE 657

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
            Y+C+VDLL RAG L++A+ LI  M      +    +WG+LL +C + G   L ++ A  
Sbjct: 658 QYTCMVDLLGRAGHLNQAYDLIMAM----PCTPDDRIWGSLLGSCKNHGDEILAEIVANH 713

Query: 395 ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             +L P +VG  V+L+NLY       E  ++R  +K+ GLKK  GCSWIEV
Sbjct: 714 IFKLVPSSVGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEV 764



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 166/346 (47%), Gaps = 19/346 (5%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT-ASTSVKDARFGKQVQAHVT 113
           N VI ++  +G    A+  +  M   G+ ++ +     L  A   + D   G+Q+  HV 
Sbjct: 77  NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G L  V V ++L+ +Y K  ++ DA  MF+++P  + V  N ++SG+ ++  +   L 
Sbjct: 137 KLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLM 196

Query: 174 LVRLMP-ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
             R M    G+  +     + + +C+ L +   GR++H  +++    L  + ++ SSLIE
Sbjct: 197 FFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKS--GLDVEEYLVSSLIE 254

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY KCG +  A  +FN    +    + ++ V+W  M+  Y  NG F + + L+  M++ G
Sbjct: 255 MYMKCGSIKNAENIFNSILDK--DSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWG 312

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            KPD    V++ S CS +  +  G +    ++  + L+      + L+D+  + G++   
Sbjct: 313 IKPDYSTMVSLFSLCSESLDIAFG-KQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTG 371

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
            K+      R   + ++ MW A++S C   G          KALEL
Sbjct: 372 LKIF-----RRSQNHNLIMWSAVISNCAQSG-------CPTKALEL 405



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 171/400 (42%), Gaps = 42/400 (10%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCL--KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78
           S L+  Y  C   KN   + N +  K    RN + +NV+IS +  NG    AL  F  M 
Sbjct: 250 SSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMM 309

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
           V GI  D   + S  +  +   D  FGKQ+   + K G  +++ V +AL+D+Y K   + 
Sbjct: 310 VWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMG 369

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
               +F      N +  +A++S   ++      LEL           D   L A+LRAC+
Sbjct: 370 TGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACS 429

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            L+    G Q+H    +      +DVF+ S+L+++Y KC  +  + +VF     RL    
Sbjct: 430 SLTLKPEGMQIHGLATK--MGFVSDVFVGSALVDLYAKCRDMGYSKKVF----LRLS--- 480

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            KD+V W +++  Y ++    E +K +  M +   +P+ V    ++S C+H   + L  E
Sbjct: 481 QKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKE 540

Query: 319 YFEWMVHD--------------------------YKLEPGPEH----YSCLVDLLCRAGE 348
              +++                            Y  E  PE     ++ ++  +     
Sbjct: 541 VHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSR 600

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
            D+   L ++M+  G     V+ + A+LSAC   G+ + G
Sbjct: 601 TDEMIVLFDKMVASGIKPDHVT-FTAILSACSHAGRVDEG 639


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/422 (32%), Positives = 236/422 (55%), Gaps = 18/422 (4%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y+ C     +G        +  RN + +N +I+     G+   +L  F  M   G   D 
Sbjct: 150 YSKC---GRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDE 206

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV--FVGSALIDLYAKLLLIHDAELMF 144
           +   S+L A  ++   R G Q+ A +   G+  S+   + SA++DLYAK   + +A+ +F
Sbjct: 207 FTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVF 266

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D I  KN +  +AL+ G+ +       ++L R +     + D F LS ++   A L+  E
Sbjct: 267 DRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVE 326

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G+Q+H Y+++    L  D+ + +S+I+MY KCGL  +A ++F+      E ++ ++VV 
Sbjct: 327 QGKQMHCYILKVPSGL--DISVANSIIDMYLKCGLTEEAERLFS------EMQV-RNVVS 377

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           WT M+  YG++G  ++ I L+  M ++G + DEVA++ ++SACSH+G ++   EYF  + 
Sbjct: 378 WTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLC 437

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           ++++++P  EHY+C+VD+L RAG+L +A  LI  M  +     +  +W  LLSAC   G 
Sbjct: 438 NNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLK----PNEGIWQTLLSACRVHGN 493

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            E+G+   +    +D  N   YVM+SN+YA+   W E  ++R+L+K KGLKK+ G SW+E
Sbjct: 494 LEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVE 553

Query: 445 VT 446
           + 
Sbjct: 554 IN 555



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 166/348 (47%), Gaps = 24/348 (6%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
            RN + +  ++  + + G+   +L     M   G+  + +   +SL A  ++     G Q
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +     KSG+     VG+A ID+Y+K   I  AE +F+++P +N V  NA+++G+     
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGN 186

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               L L + M   G   D FT ++ L+AC  L A   G Q+HA +I +   +     + 
Sbjct: 187 GRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIA 246

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+++++Y KCG + +A +VF+    R+E    K+++ W++++  + + G   E + L+  
Sbjct: 247 SAIVDLYAKCGYLFEAQKVFD----RIE---QKNLISWSALIQGFAQEGNLLEAMDLFRQ 299

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE-PGPEHYSC---LVDLL 343
           +  + +  D      ++   +    V+ G +     +H Y L+ P     S    ++D+ 
Sbjct: 300 LRESVSNVDGFVLSIMMGVFADLALVEQGKQ-----MHCYILKVPSGLDISVANSIIDMY 354

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
            + G  ++A +L +EM  R     +V  W  +++     GK  LG+ A
Sbjct: 355 LKCGLTEEAERLFSEMQVR-----NVVSWTVMITG---YGKHGLGEKA 394



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 126/275 (45%), Gaps = 15/275 (5%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G QV A     G+   + + + LID+Y K   +  A  +FD +  +N V   AL+ GY +
Sbjct: 23  GLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQ 82

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                G L L+  M   G+  + FT S  L+AC  L   E G Q+H   ++      + V
Sbjct: 83  EGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVV 142

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
              ++ I+MY KCG +  A QVFN    R       ++V W +M+  +   G  ++ + L
Sbjct: 143 --GNATIDMYSKCGRIGMAEQVFNKMPFR-------NLVSWNAMIAGHTHEGNGRKSLVL 193

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLEPGPEHYSCLVDLL 343
           ++ M   G  PDE  F + + AC   G ++ G + +   +   + +       S +VDL 
Sbjct: 194 FQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLY 253

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            + G L +A K+     DR    + +S W AL+  
Sbjct: 254 AKCGYLFEAQKV----FDRIEQKNLIS-WSALIQG 283



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 147/360 (40%), Gaps = 52/360 (14%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA     G  +    I  S ++  Y  C +   L         +  +N + ++ +I  
Sbjct: 227 QIHASLITRGFPISIRNIIASAIVDLYAKCGY---LFEAQKVFDRIEQKNLISWSALIQG 283

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F + G+ L A+  F  +      +D + L   +     +     GKQ+  ++ K      
Sbjct: 284 FAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLD 343

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           + V +++ID+Y K  L  +AE +F E+ V+N V    +++GY +  L    + L   M  
Sbjct: 344 ISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQL 403

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G++ D     ALL AC   S +   R+   Y  R C N                     
Sbjct: 404 DGIELDEVAYLALLSAC---SHSGLIRESQEYFSRLCNN--------------------- 439

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
                      H+++  I      +  M+ + GR G  KE   L E M +   KP+E  +
Sbjct: 440 -----------HQMKPNIEH----YACMVDILGRAGQLKEAKNLIENMKL---KPNEGIW 481

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAG---ELDKAWKLI 356
            T++SAC   G +++G E  E +   ++++   P +Y  + ++   AG   E ++  KL+
Sbjct: 482 QTLLSACRVHGNLEIGREVGEIL---FRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLV 538



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 23/193 (11%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L+ LLR C+     + G QVHA  +      G D+ M + LI+MYGKC  V  A  VF+ 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVN--MGFGFDLIMNNDLIDMYGKCSRVDLACSVFDR 64

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                   + ++VV WT+++  Y + G  K  + L   M  +G KP+E  F T + AC  
Sbjct: 65  M-------LERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGA 117

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCL----VDLLCRAGELDKAWKLINEMLDRGHG 365
            G V+ G++     +H   ++ G E  S +    +D+  + G +  A ++ N+M  R   
Sbjct: 118 LGVVENGMQ-----IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFR--- 169

Query: 366 SSSVSMWGALLSA 378
             ++  W A+++ 
Sbjct: 170 --NLVSWNAMIAG 180


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 136/399 (34%), Positives = 217/399 (54%), Gaps = 19/399 (4%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N  IS   R G    AL     M   G   D Y L  +L ++  ++       + + 
Sbjct: 7   VAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPALNSAALLRLP--ADALHSL 64

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           + ++G  + + V +AL+D YAKL     A  +FDE+P ++ V   +LL+G   ++     
Sbjct: 65  LLRAGLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDSA 124

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SS 229
           L++ R M A G+  D F ++A L +CAG +A E GR VHA  +R    L  D F+   +S
Sbjct: 125 LQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRSVHAAAVR----LALDPFLSVGNS 180

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           L+ MY K G + +A +VF+         +++ D + WT+++  Y +NG  +E +++Y  M
Sbjct: 181 LVSMYAKTGSLGEAKKVFDAT------RVDRCDPITWTALIVGYAQNGRGRESLEIYADM 234

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           + +G +PD V F+ ++ ACSH G V  G  +F  M  ++ + PG +HY+C+VDLL RAG 
Sbjct: 235 VRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGR 294

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD+A  L+N    R       ++W ALL+AC      EL + AA     LDP +   YVM
Sbjct: 295 LDEAMDLLNRSTTR----LDATVWKALLAACRTHRNAELAEHAAAMVWRLDPTDAVPYVM 350

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSNLY++   W ++ ++R  MK +G+ K+ GCSW+   G
Sbjct: 351 LSNLYSRAGRWGDVARVRTSMKARGITKEPGCSWVAANG 389



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 117/266 (43%), Gaps = 10/266 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +++   R+ S   AL+ +  M   G+  D +A+ ++L++         G+ V
Sbjct: 103 RDVVSWTSLLTGLARSRSHDSALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRSV 162

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSVCANALLSGYCEAK 166
            A   +      + VG++L+ +YAK   + +A+ +FD   V   + +   AL+ GY +  
Sbjct: 163 HAAAVRLALDPFLSVGNSLVSMYAKTGSLGEAKKVFDATRVDRCDPITWTALIVGYAQNG 222

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                LE+   M   G   D+ T   LL AC+     + GR  H   ++    +      
Sbjct: 223 RGRESLEIYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGR-AHFRSMQAEHGIAPGADH 281

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            + ++++ G+ G + +A+ + N +  RL      D  +W ++L    R     E+ +   
Sbjct: 282 YACMVDLLGRAGRLDEAMDLLNRSTTRL------DATVWKALLAAC-RTHRNAELAEHAA 334

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQ 312
           AM+      D V +V + +  S  G+
Sbjct: 335 AMVWRLDPTDAVPYVMLSNLYSRAGR 360


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 137/401 (34%), Positives = 220/401 (54%), Gaps = 15/401 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  +N + ++ +I+ +  +G    AL  F  M   G+  D   L S L A + +K+ + G
Sbjct: 192 MEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG 251

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + +   V K G     FV +AL+D+Y K   I DA  +FD++P ++ V    ++ GY E 
Sbjct: 252 RLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAEC 311

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L L   M   G+  D   +  ++ ACA L A    R +  Y+ RK   L  DV 
Sbjct: 312 GNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL--DVI 369

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +++I+M+ KCG V  A ++F+    R+E    K+V+ W++M+  YG +G  ++ + L+
Sbjct: 370 LGTAMIDMHAKCGCVESAREIFD----RME---EKNVISWSAMIAAYGYHGQGRKALDLF 422

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             ML +G  P+++  V+++ ACSH G V+ G+ +F  M  DY +    +HY+C+VDLL R
Sbjct: 423 PMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGR 482

Query: 346 AGELDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           AG LD+A KLI  M +++  G     +WGA L AC       L + AA   LEL P N G
Sbjct: 483 AGRLDEALKLIESMTVEKDEG-----LWGAFLGACRTHKDVVLAEKAATSLLELQPQNPG 537

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            Y++LSN+YA    W+++ + R+LM ++ LKK  G +WIEV
Sbjct: 538 HYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEV 578



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 161/331 (48%), Gaps = 23/331 (6%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           ++  F + G  +    TF  +   G   D Y L   + A   +K+ + G+ +   V K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
                FV +AL+D+Y K   I DA  +FD++  ++ V    ++ GY E       L L  
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M   G+  D   +  ++ ACA L A    R +  Y+ RK   L  DV + +++I+MY K
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQL--DVILGTAMIDMYAK 178

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG V  A ++F+    R+E    K+V+ W++M+  YG +G  ++ + L+  ML +G  PD
Sbjct: 179 CGCVESAREIFD----RME---EKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPD 231

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHD--YKLEPGPEHYSC--LVDLLCRAGELDKA 352
           ++   +++ ACS    +++G      ++H   YK     +H+ C  LVD+  +  E++ A
Sbjct: 232 KITLASLLYACSDLKNLQMG-----RLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDA 286

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
             L ++M +R      +  W  ++    +CG
Sbjct: 287 RFLFDKMPER-----DLVTWTVMIGGYAECG 312



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 182/378 (48%), Gaps = 33/378 (8%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  CR  ++   L + ++    R+ + + V+I  +   G    +L  F  M   G+  D 
Sbjct: 75  YVKCREIEDARFLFDKMQ---ERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDK 131

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
            A+ + + A   +      + +  ++ +  +   V +G+A+ID+YAK   +  A  +FD 
Sbjct: 132 VAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDR 191

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +  KN +  +A+++ Y         L+L R+M + G+  D  TL++LL AC+ L   + G
Sbjct: 192 MEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG 251

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           R +H  + +   +L  D F+ ++L++MYGKC  +  A  +F+    R       D+V WT
Sbjct: 252 RLIHHIVYKFGLDL--DHFVCAALVDMYGKCREIEDARFLFDKMPER-------DLVTWT 302

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
            M+G Y   G   E + L++ M   G  PD+VA VTV+ AC+     KLG  +    + D
Sbjct: 303 VMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACA-----KLGAMHKARTIDD 357

Query: 327 Y----KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           Y    K +      + ++D+  + G ++ A     E+ DR    + +S W A+++A    
Sbjct: 358 YIQRKKFQLDVILGTAMIDMHAKCGCVESA----REIFDRMEEKNVIS-WSAMIAAYGYH 412

Query: 383 GKFELGKLAAQKALELDP 400
           G+        +KAL+L P
Sbjct: 413 GQ-------GRKALDLFP 423


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 222/403 (55%), Gaps = 20/403 (4%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFM--HVHG---IFLDTYALCSSLTASTSVKDARF 104
           N   +N +I  +  N   + A+  +  M  + HG   IF D +     + +   +     
Sbjct: 121 NAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDL 180

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN--ALLSGY 162
           GKQV  HV K G  S+  V ++L+++Y K   + DA  +F+E+  +++   +  A++SGY
Sbjct: 181 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGY 240

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                +A  LE  R M  +G++ D  +L ++L  CA L A E G+ +H Y  +       
Sbjct: 241 ARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADK--AGFLR 298

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           ++ + ++LIEMY KCG + +  ++F+    R       DV+ W++M+     +G  +E I
Sbjct: 299 NICVCNALIEMYAKCGSIDQGRRLFDQMKER-------DVISWSTMIVGLANHGRAREAI 351

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L++ M     +P  + FV +++AC+H G +  G+ YFE M  DY +EPG EHY CLV+L
Sbjct: 352 ELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNL 411

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L  +G LD+A +L+ +M  +        +WG+LLS+C   G  ++  +A +  LEL+P +
Sbjct: 412 LGLSGRLDQALELVKKMPRK----PDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPAD 467

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G YV+LSNLYA    WD + ++R+LM+ K +KK  GCS IEV
Sbjct: 468 TGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEV 510



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 149/304 (49%), Gaps = 37/304 (12%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++ AH+ K     S F+ + ++D+         A L+F  +   N+   NA++  Y   
Sbjct: 76  KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 135

Query: 166 KLWAGGLELVRLMPALGLDY-------DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           K++   + + + M  LG  +       D FT   ++++CAGL   + G+QVH ++ +   
Sbjct: 136 KVYVLAITVYKQM--LGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFK--F 191

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
              ++  +++SL+EMY KC  +  A +VF     R     +  +  WT+++  Y R G +
Sbjct: 192 GQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTER-----DATIFSWTAIVSGYARIGCY 246

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
            + ++ +  M M G +PDE++ V+V+  C+  G ++LG    +W +H Y  + G     C
Sbjct: 247 ADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELG----KW-IHIYADKAGFLRNIC 301

Query: 339 ----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
               L+++  + G +D+  +L ++M +R      V  W  ++    + G+       A++
Sbjct: 302 VCNALIEMYAKCGSIDQGRRLFDQMKER-----DVISWSTMIVGLANHGR-------ARE 349

Query: 395 ALEL 398
           A+EL
Sbjct: 350 AIEL 353


>gi|57899090|dbj|BAD86909.1| putative PPR986-12 [Oryza sativa Japonica Group]
          Length = 560

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 218/397 (54%), Gaps = 17/397 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R    +  +I+ + R G     L+ F  M   G+ L T+A   +L A T V D   G+Q+
Sbjct: 135 RTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQL 194

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K     ++ V ++LID+Y     I DA  +FD  P +N +  N +++GY +    
Sbjct: 195 HLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCD-- 252

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L  ++L+  +  + + FTL+++  ACA L+A   G+QVH  ++R+  +  +D+ M +
Sbjct: 253 --PLMALQLLLEMNDEPNCFTLTSITSACADLAALRCGKQVHGAVLRR--SYSDDLQMGN 308

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +T A  VF+  G        KD   WTSM+  YG NGY  E ++L+ +M
Sbjct: 309 ALVDMYSKCGSITNAKNVFDRMG-------CKDKFSWTSMIAGYGMNGYGNEAVQLFSSM 361

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           +  G  PD V F+++IS+CSH G V  G  +F  M+++Y L+P  E Y  +V+LL RAG 
Sbjct: 362 IHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGR 421

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A  LI+ M      +    +WGALL A       E+G+LAA+K  E++P +V  Y+M
Sbjct: 422 LREALDLIDTM----PFAPDEYVWGALLGASKMHNNVEMGRLAARKITEINPDDVKNYIM 477

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L+++YA    W E    R  ++  G +K+ G SWIEV
Sbjct: 478 LASIYAAGSKWGEYAFTRRSLRGIGSRKEAGISWIEV 514



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 134/313 (42%), Gaps = 16/313 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  ++S +  NG    AL  F  M   G   + Y L S LTA            +
Sbjct: 32  RDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTACRGPCAPAMAMPL 91

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCA-NALLSGYCEAK 166
            A   + G     +V +ALID YA L   + DA  +FD +    +  +  ++++GY    
Sbjct: 92  HAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSGRTAASWTSMIAGYARWG 151

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
               GL L + M   G++   F  S  L AC  +     G+Q+H   I+K  ++  ++ +
Sbjct: 152 QERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQLHLQCIKKALDV--NLAV 209

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +SLI+MY  C  +  A  +F       +G   ++++ W +M+  Y +      +  L E
Sbjct: 210 VNSLIDMYCTCARILDARSLF-------DGTPERNLITWNTMIAGYSQCDPLMALQLLLE 262

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
              MN  +P+     ++ SAC+    ++ G +     V         +  + LVD+  + 
Sbjct: 263 ---MN-DEPNCFTLTSITSACADLAALRCG-KQVHGAVLRRSYSDDLQMGNALVDMYSKC 317

Query: 347 GELDKAWKLINEM 359
           G +  A  + + M
Sbjct: 318 GSITNAKNVFDRM 330



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 115/261 (44%), Gaps = 19/261 (7%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FDE+P ++ V   A+LSGY    L    L++ R M A G   + +TLS++L AC G
Sbjct: 22  ARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTACRG 81

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL-VTKALQVFNLAGHRLEGEI 258
             A      +HA  +R+   +    ++ ++LI+ Y      V  A ++F+  G       
Sbjct: 82  PCAPAMAMPLHAVAVRR--GVDRMPYVVNALIDSYASLAEGVVDARRLFDALGS------ 133

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            +    WTSM+  Y R G  +  ++L++ ML +G +    A    + AC+    + LG +
Sbjct: 134 GRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLG-Q 192

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
                     L+      + L+D+ C    +  A  L +   +R     ++  W  +++ 
Sbjct: 193 QLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPER-----NLITWNTMIAG 247

Query: 379 CHDCGKFELGKLAAQKALELD 399
              C       +A Q  LE++
Sbjct: 248 YSQCDPL----MALQLLLEMN 264


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 137/400 (34%), Positives = 219/400 (54%), Gaps = 17/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +IS + +NG P  A++T++ M   G+  D   + S L+A   +     G  +
Sbjct: 360 KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIML 419

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                ++G  S V V ++LID+Y+K   I  A  +F  IP KN +   +++ G       
Sbjct: 420 HEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRS 479

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L   + M  L L  +  TL ++L ACA + A   G+++HA+ +R    LG D F+ +
Sbjct: 480 FEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALR--TGLGFDGFLPN 536

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY +CG +  A   FN           KDV  W  +L  Y + G     ++L+  M
Sbjct: 537 ALLDMYVRCGRMEPAWNQFN--------SCEKDVASWNILLTGYAQQGKGGLAVELFHKM 588

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           + +   PDE+ F +++ ACS +G V  G+EYFE M H + + P  +HY+ +VDLL RAG 
Sbjct: 589 IESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGR 648

Query: 349 LDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           L+ A++ I +M +D        ++WGALL+AC      ELG+LAAQ   E+D  +VG Y+
Sbjct: 649 LEDAYEFIKKMPID-----PDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYI 703

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +L NLYA    WDE+ ++R++M+E  L  D GCSW+EV G
Sbjct: 704 LLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAG 743



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 183/367 (49%), Gaps = 24/367 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +NV++  + + G    AL  +  M   GI  D Y     L     + D   G++V
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREV 217

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             HV + G+ S V V +ALI +Y K   I  A L+FD +P ++ +  NA++SGY E  + 
Sbjct: 218 HLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVC 277

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GL L  +M    +D D  T+++++ AC  L     GR+VH Y+I+       +V + +
Sbjct: 278 LEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIK--TGFVAEVSVNN 335

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+M+   G   +A  VF+    ++E    KD+V WT+M+  Y +NG  ++ ++ Y  M
Sbjct: 336 SLIQMHSSVGCWDEAEMVFS----KMEF---KDLVSWTAMISGYEKNGLPEKAVETYTIM 388

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
              G  PDE+   +V+SAC+  G +  GI     M+H++    G   Y    + L+D+  
Sbjct: 389 EHEGVVPDEITIASVLSACAGLGLLDKGI-----MLHEFADRTGLTSYVIVANSLIDMYS 443

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH-DCGKFELGKLAAQKALELDPHNV 403
           +   +DKA ++ + + ++     +V  W +++     +   FE      Q  L L P++V
Sbjct: 444 KCRCIDKALEVFHRIPNK-----NVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSV 498

Query: 404 GIYVMLS 410
            +  +LS
Sbjct: 499 TLVSVLS 505



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 151/337 (44%), Gaps = 35/337 (10%)

Query: 14  ICLIIFQSRLMLPYTTCRHK-------KNLGTLTNCLK------FLNP-----RNPLPFN 55
           I  I  Q+ L  P+ +  HK       +N+ T    L+       LNP     +NP   N
Sbjct: 7   IPAIHLQTNLPNPHHSKTHKPKPLNFSRNIQTRQISLRKHHEISVLNPSSITAQNP---N 63

Query: 56  VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
            +I + C  G    AL     M    + ++     + L      + A  G +V ++V+K+
Sbjct: 64  SLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKT 123

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
                V +G+AL+ ++ +   + +A  +F ++  ++    N L+ GY +A  +   L L 
Sbjct: 124 VTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLY 183

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
             M  +G+  D +T   +LR C GL     GR+VH ++IR      +DV + ++LI MY 
Sbjct: 184 HRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRY--GFESDVDVVNALITMYV 241

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG +  A  VF+    R       D + W +M+  Y  N    E ++L+  M      P
Sbjct: 242 KCGDIFSARLVFDRMPRR-------DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDP 294

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           D +   +VISAC   G  +LG E     VH Y ++ G
Sbjct: 295 DLMTMTSVISACEALGDERLGRE-----VHGYVIKTG 326


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 131/345 (37%), Positives = 198/345 (57%), Gaps = 15/345 (4%)

Query: 102 ARFGKQVQAH-VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           ARFGK  +A  +     + +V   +A+I  Y +   + +A  +F E+P KNS+    +++
Sbjct: 131 ARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVIN 190

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY          +L+  MP      D  T +  L +CA L+A + G+Q+H  +++     
Sbjct: 191 GYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKS--GY 247

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             D+F+ ++LI MY KCG ++ A  +F    H        DVV W S++  Y  NG  +E
Sbjct: 248 ATDLFVSNALITMYAKCGSISSAELLFKDIDHF-------DVVSWNSLIAAYALNGNGRE 300

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            +KL+  M + G  PDEV FV ++SACSH G +  G++ F+ MV  Y +EP  EHY+C+V
Sbjct: 301 ALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMV 360

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RAG L++A++L+  M      +++  +WGALL AC   G  EL K AA+K LE +P
Sbjct: 361 DLLGRAGRLEEAFQLVRGM----KINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEP 416

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           H    YV+LSN+ A+   WDE+ ++R LMKEKG +K  G SWIE+
Sbjct: 417 HKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIEL 461



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 8/222 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +  VI+ + R G    A +  + M       D       L++   +   + GKQ+
Sbjct: 180 KNSISWTTVINGYVRMGKLDEARQLLNQMPYRNK-PDQSTFACGLSSCAHLAALQVGKQL 238

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V KSG+ + +FV +ALI +YAK   I  AEL+F +I   + V  N+L++ Y      
Sbjct: 239 HQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNG 298

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M   G+  D  T   +L AC+ +   + G ++   M+ +  N+       +
Sbjct: 299 REALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMV-QAYNIEPLAEHYA 357

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            ++++ G+ G + +A Q+  + G +    IN +  +W ++LG
Sbjct: 358 CMVDLLGRAGRLEEAFQL--VRGMK----INANAGIWGALLG 393



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 29/264 (10%)

Query: 127 LIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY 185
           +I  Y +   +  A  +F+ +P K N VC NA+++GY + + +     L   MPA     
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPA----K 56

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           D  + +++L           G Q    M  +      DV   + +++ + + G +  + +
Sbjct: 57  DLVSWNSMLTGYTRNGEMRLGLQFFEEMAER------DVVSWNLMVDGFVEVGDLNSSWE 110

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
            F       E   N + V W +ML  + R G   E  +L++ M +       VA+  +I+
Sbjct: 111 FF-------EKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNV----VAWNAMIA 159

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
           A      V   I  F  M     +      ++ +++   R G+LD+A +L+N+M  R   
Sbjct: 160 AYVQNCHVDEAISLFMEMPEKNSIS-----WTTVINGYVRMGKLDEARQLLNQMPYRNKP 214

Query: 366 SSSVSMWGALLSACHDCGKFELGK 389
             S    G  LS+C      ++GK
Sbjct: 215 DQSTFACG--LSSCAHLAALQVGK 236



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 25/191 (13%)

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           F+ A    +    KD+V W SML  Y RNG  +  ++ +E M     + D V++  ++  
Sbjct: 43  FDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEM----AERDVVSWNLMVDG 98

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC---RAGELDKAWKLINEMLDRG 363
               G +    E+FE +       P P   S  V +LC   R G++ +A +L ++M  R 
Sbjct: 99  FVEVGDLNSSWEFFEKI-------PNPNTVS-WVTMLCGFARFGKIAEARRLFDQMPIR- 149

Query: 364 HGSSSVSMWGALLSA-CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422
               +V  W A+++A   +C   E    A    +E+   N   +  + N Y +    DE 
Sbjct: 150 ----NVVAWNAMIAAYVQNCHVDE----AISLFMEMPEKNSISWTTVINGYVRMGKLDEA 201

Query: 423 GQLRELMKEKG 433
            QL   M  + 
Sbjct: 202 RQLLNQMPYRN 212


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 129/403 (32%), Positives = 226/403 (56%), Gaps = 16/403 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +  +++ F + G  L A++ +  M   G   D   +   L AS  + D + G
Sbjct: 177 MAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMG 236

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + V  ++ ++G   +V V ++L+D+YAK+  I  A  +F  +  K +V   +L+SG+ + 
Sbjct: 237 RSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQN 296

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L     E V  M +LG   D  TL  +L AC+ + + + GR VH Y++++      D  
Sbjct: 297 GLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVL---DRV 353

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
             ++L++MY KCG ++ + ++F   G        KD+V W +M+  YG +G  +EV+ L+
Sbjct: 354 TATALMDMYSKCGALSSSREIFEHVGR-------KDLVCWNTMISCYGIHGNGQEVVSLF 406

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M  +  +PD   F +++SA SH+G V+ G  +F  M++ YK++P  +HY CL+DLL R
Sbjct: 407 LKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLAR 466

Query: 346 AGELDKAWKLIN-EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           AG +++A  +IN E LD     +++ +W ALLS C +     +G +AA K L+L+P ++G
Sbjct: 467 AGRVEEALDMINSEKLD-----NALPIWVALLSGCINHRNLSVGDIAANKILQLNPDSIG 521

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           I  ++SN +A    W E+ ++R+LM+   ++K  G S IEV G
Sbjct: 522 IQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYSAIEVNG 564



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 165/372 (44%), Gaps = 24/372 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R    +N +I  + R  +P   L+ +  M    I  D+     ++ A  S      G
Sbjct: 76  LPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKG 135

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + V       G+ + VFV S++++LY K   + +AE++F ++  ++ +C   +++G+ +A
Sbjct: 136 EAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQA 195

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 +E  R M   G   D   +  LL+A   L   + GR VH Y+ R    L  +V 
Sbjct: 196 GKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYR--TGLPMNVV 253

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +++SL++MY K G +  A +VF+    R+   + K  V W S++  + +NG   +  +  
Sbjct: 254 VETSLVDMYAKVGFIEVASRVFS----RM---MFKTAVSWGSLISGFAQNGLANKAFEAV 306

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP---GPEHYSCLVDL 342
             M   G +PD V  V V+ ACS  G +K G      +VH Y L+         + L+D+
Sbjct: 307 VEMQSLGFQPDLVTLVGVLVACSQVGSLKTG-----RLVHCYILKRHVLDRVTATALMDM 361

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDP 400
             + G L  + ++   +     G   +  W  ++S    H  G+  +          ++P
Sbjct: 362 YSKCGALSSSREIFEHV-----GRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEP 416

Query: 401 HNVGIYVMLSNL 412
            +     +LS L
Sbjct: 417 DHATFASLLSAL 428


>gi|222618271|gb|EEE54403.1| hypothetical protein OsJ_01428 [Oryza sativa Japonica Group]
          Length = 440

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 137/398 (34%), Positives = 219/398 (55%), Gaps = 17/398 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R    +  +I+ + R G     L+ F  M   G+ L T+A   +L A T V D   G+Q+
Sbjct: 49  RTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQL 108

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K     ++ V ++LID+Y     I DA  +FD  P +N +  N +++GY +    
Sbjct: 109 HLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCD-- 166

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L  ++L+  +  + + FTL+++  ACA L+A   G+QVH  ++R+  +  +D+ M +
Sbjct: 167 --PLMALQLLLEMNDEPNCFTLTSITSACADLAALRCGKQVHGAVLRR--SYSDDLQMGN 222

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +T A  VF+  G        KD   WTSM+  YG NGY  E ++L+ +M
Sbjct: 223 ALVDMYSKCGSITNAKNVFDRMGC-------KDKFSWTSMIAGYGMNGYGNEAVQLFSSM 275

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           +  G  PD V F+++IS+CSH G V  G  +F  M+++Y L+P  E Y  +V+LL RAG 
Sbjct: 276 IHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGR 335

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A  LI+ M      +    +WGALL A       E+G+LAA+K  E++P +V  Y+M
Sbjct: 336 LREALDLIDTM----PFAPDEYVWGALLGASKMHNNVEMGRLAARKITEINPDDVKNYIM 391

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           L+++YA    W E    R  ++  G +K+ G SWIE++
Sbjct: 392 LASIYAAGSKWGEYAFTRRSLRGIGSRKEAGISWIELS 429


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 226/430 (52%), Gaps = 44/430 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N++I  + +N    + LK +  M   G   D   LC+ L+A     +  +GK +
Sbjct: 180 RDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAI 239

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY------ 162
              +  +G+     + ++L+++YA    +H A  ++D++P K+ V + A+LSGY      
Sbjct: 240 HQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMV 299

Query: 163 ----------------CEAKLWAG---------GLELVRLMPALGLDYDHFTLSALLRAC 197
                           C + + +G          L+L   M    +  D  T+ +++ AC
Sbjct: 300 QDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISAC 359

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A + A    + +H Y  +     G  + + ++LI+MY KCG + KA +VF       E  
Sbjct: 360 ANVGALVQAKWIHTYADKN--GFGRTLPINNALIDMYAKCGNLVKAREVF-------ENM 410

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
             K+V+ W+SM+  +  +G     I L+  M     +P+ V F+ V+ ACSH G V+ G 
Sbjct: 411 PRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQ 470

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           ++F  M++++++ P  EHY C+VDL CRA  L KA +LI  M        +V +WG+L+S
Sbjct: 471 KFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMP----FPPNVIIWGSLMS 526

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           AC + G+ ELG+ AA + LEL+P + G  V+LSN+YAK   WD++G +R+LMK KG+ K+
Sbjct: 527 ACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKE 586

Query: 438 VGCSWIEVTG 447
             CS IEV  
Sbjct: 587 KACSRIEVNN 596



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 118/257 (45%), Gaps = 14/257 (5%)

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F  IP   +  +N LL  +         L L   +   G   D F+   LL+A + LSA
Sbjct: 71  LFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSA 130

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G ++H  +  K      D F+QS+LI MY  CG +  A  +F+   HR       DV
Sbjct: 131 LNLGLEIHG-LASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHR-------DV 182

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V W  M+  Y +N ++  V+KLYE M  +GT+PD +   TV+SAC+H G +  G    ++
Sbjct: 183 VTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQF 242

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
            + D     G    + LV++    G +  A ++ +++      S  + +  A+LS     
Sbjct: 243 -IKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQL-----PSKHMVVSTAMLSGYAKL 296

Query: 383 GKFELGKLAAQKALELD 399
           G  +  +    + +E D
Sbjct: 297 GMVQDARFIFDRMVEKD 313


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 139/404 (34%), Positives = 227/404 (56%), Gaps = 15/404 (3%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDA 102
           K   P N   +N +I  +   G+ + A   +  M V G+   DT+     + A T++ D 
Sbjct: 78  KIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADV 137

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G+ + + V +SG+ S ++V ++L+ LYA    +  A  +FD++P K+ V  N++++G+
Sbjct: 138 RLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGF 197

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            E       L L   M + G+  D FT+ +LL ACA + A   G++VH YMI+    L  
Sbjct: 198 AENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK--VGLTR 255

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           ++   + L+++Y +CG V +A  +F+         ++K+ V WTS++     NG+ KE I
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEM-------VDKNSVSWTSLIVGLAVNGFGKEAI 308

Query: 283 KLYEAM-LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           +L++ M    G  P E+ FV ++ ACSH G VK G EYF  M  +YK+EP  EH+ C+VD
Sbjct: 309 ELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVD 368

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           LL RAG++ KA++ I  M  +     +V +W  LL AC   G  +L + A  + L+L+P+
Sbjct: 369 LLARAGQVKKAYEYIKSMPMQ----PNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPN 424

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           + G YV+LSN+YA    W ++ ++R+ M   G+KK  G S +EV
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 142/399 (35%), Positives = 222/399 (55%), Gaps = 15/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I+ +   G    AL  F  M   G FLD +   S+L A + +   + G Q+
Sbjct: 137 RNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQI 196

Query: 109 QAHVTKSGWLSSV--FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            A +   G+L SV   V  ALIDLY K   +  A  +F  I  K+ +   AL+ GY +  
Sbjct: 197 HAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEG 256

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
             A  +EL R +    +  D F LS+++   A  +  + G+Q+HA+ I+     G D+ +
Sbjct: 257 NLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIK--VPSGVDISV 314

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +S+++MY KCG++ +A ++F+    R       +V+ WT M+  YG++G  KE I+L++
Sbjct: 315 CNSILDMYLKCGMINEAERLFSEMPAR-------NVISWTVMITGYGKHGLGKEAIRLFD 367

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M ++ T+PD+V ++ V+  CSH+G V+ G EYF  +   + ++   EHY+C+VDLL RA
Sbjct: 368 EMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRA 427

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G L +A  L++ M       ++V +W  LLSAC   G  ELGK      L LD  N   Y
Sbjct: 428 GRLKEAKNLVDSM----PLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNY 483

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           VM+SN+YA    W E  ++REL+K K LKK+ G SW+E+
Sbjct: 484 VMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEI 522



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 193/388 (49%), Gaps = 25/388 (6%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++  + L++ Y  C     LG   +    +  RN + +  ++    +NG+PL +L  FS 
Sbjct: 7   LMLSNDLIVMYGKC---GRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSK 63

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M + G+  + +   ++L A   +     G+Q+     K+G+     VG+++ID+Y+K   
Sbjct: 64  MGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGR 123

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I++A  MF+ +PV+N +  NA+++GY  A      L L + M  +G   D FT ++ L+A
Sbjct: 124 INEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKA 183

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+ L A + G Q+HA++I        +  +  +LI++Y KCG +  A +VF+   H  E 
Sbjct: 184 CSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFS---HIEE- 239

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              K V+ WT+++  Y + G   E ++L+  +  +  + D     +++   +    V+ G
Sbjct: 240 ---KHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQG 296

Query: 317 IEYFEWMVHDYKLEPGPEHYSC--LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            +   + +   K+  G +   C  ++D+  + G +++A +L +EM  R     +V  W  
Sbjct: 297 KQMHAFAI---KVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPAR-----NVISWTV 348

Query: 375 LLSACHDCGKFELGKLAAQ--KALELDP 400
           +++     GK  LGK A +    ++LD 
Sbjct: 349 MITG---YGKHGLGKEAIRLFDEMQLDS 373



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 124/262 (47%), Gaps = 15/262 (5%)

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G+   + + + LI +Y K   +  A  +FD +  +N V   AL+ G+ +       L L 
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
             M   G+  + FT S  L+AC  L+  + GRQ+H   ++   ++ N V   +S+I+MY 
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVV--GNSIIDMYS 119

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG + +A  +F +   R       +++ W +M+  Y   G+ ++ + L++ M   G   
Sbjct: 120 KCGRINEAACMFEVMPVR-------NLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFL 172

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           DE  F + + ACS  G +K G +   +++   +           L+DL  + G+L  A +
Sbjct: 173 DEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARR 232

Query: 355 LINEMLDRGHGSSSVSMWGALL 376
           + + + ++      V  W AL+
Sbjct: 233 VFSHIEEK-----HVISWTALI 249



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 132/319 (41%), Gaps = 42/319 (13%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA     G L          L+  Y  C     L         +  ++ + +  +I  
Sbjct: 195 QIHAFLITGGFLYSVNTAVAGALIDLYVKC---GKLFMARRVFSHIEEKHVISWTALILG 251

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + + G+   +++ F  +    I +D + L S +         + GKQ+ A   K      
Sbjct: 252 YAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVD 311

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           + V ++++D+Y K  +I++AE +F E+P +N +    +++GY +  L   G E +RL   
Sbjct: 312 ISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGL---GKEAIRLFDE 368

Query: 181 LGLDY---DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYG 235
           + LD    D  T  A+L  C+     E G++   Y  R C   G    ++  + ++++ G
Sbjct: 369 MQLDSTEPDDVTYLAVLLGCSHSGLVEKGQE---YFSRLCSYHGIKARVEHYACMVDLLG 425

Query: 236 KCGLVTKALQVFN--------------LAGHRLEG--EINKDV------------VLWTS 267
           + G + +A  + +              L+  R+ G  E+ K+V            V +  
Sbjct: 426 RAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVM 485

Query: 268 MLGVYGRNGYFKEVIKLYE 286
           M  +Y   GY+KE  ++ E
Sbjct: 486 MSNIYADAGYWKECERIRE 504


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 137/400 (34%), Positives = 219/400 (54%), Gaps = 17/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +IS + +NG P  A++T++ M   G+  D   + S L+A   +     G  +
Sbjct: 360 KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIML 419

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                ++G  S V V ++LID+Y+K   I  A  +F  IP KN +   +++ G       
Sbjct: 420 HEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRS 479

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L   + M  L L  +  TL ++L ACA + A   G+++HA+ +R    LG D F+ +
Sbjct: 480 FEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRT--GLGFDGFLPN 536

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY +CG +  A   FN           KDV  W  +L  Y + G     ++L+  M
Sbjct: 537 ALLDMYVRCGRMEPAWNQFN--------SCEKDVASWNILLTGYAQQGKGGLAVELFHKM 588

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           + +   PDE+ F +++ ACS +G V  G+EYFE M H + + P  +HY+ +VDLL RAG 
Sbjct: 589 IESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGR 648

Query: 349 LDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           L+ A++ I +M +D        ++WGALL+AC      ELG+LAAQ   E+D  +VG Y+
Sbjct: 649 LEDAYEFIKKMPID-----PDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYI 703

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +L NLYA    WDE+ ++R++M+E  L  D GCSW+EV G
Sbjct: 704 LLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAG 743



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 179/366 (48%), Gaps = 22/366 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +NV++  + + G    AL  +  M   GI  D Y     L     + D   G++V
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREV 217

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             HV + G+ S V V +ALI +Y K   I  A L+FD +P ++ +  NA++SGY E  + 
Sbjct: 218 HLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVC 277

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GL L  +M    +D D  T+++++ AC  L     GR+VH Y+I+       +V + +
Sbjct: 278 LEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKT--GFVAEVSVNN 335

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+M+   G   +A  VF+    ++E    KD+V WT+M+  Y +NG  ++ ++ Y  M
Sbjct: 336 SLIQMHSSVGCWDEAEMVFS----KMEF---KDLVSWTAMISGYEKNGLPEKAVETYTIM 388

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
              G  PDE+   +V+SAC+  G +  GI     M+H++    G   Y    + L+D+  
Sbjct: 389 EHEGVVPDEITIASVLSACAGLGLLDKGI-----MLHEFADRTGLTSYVIVANSLIDMYS 443

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           +   +DKA     E+  R    + +S    +L    +   FE      Q  L L P++V 
Sbjct: 444 KCRCIDKAL----EVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVT 499

Query: 405 IYVMLS 410
           +  +LS
Sbjct: 500 LVSVLS 505



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 151/337 (44%), Gaps = 35/337 (10%)

Query: 14  ICLIIFQSRLMLPYTTCRHK-------KNLGTLTNCLK------FLNP-----RNPLPFN 55
           I  I  Q+ L  P+ +  HK       +N+ T    L+       LNP     +NP   N
Sbjct: 7   IPAIHLQTNLPNPHHSKTHKPKPLNFSRNIQTRQISLRKHHEISVLNPSSITAQNP---N 63

Query: 56  VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
            +I + C  G    AL     M    + ++     + L      + A  G +V ++V+K+
Sbjct: 64  SLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKT 123

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
                V +G+AL+ ++ +   + +A  +F ++  ++    N L+ GY +A  +   L L 
Sbjct: 124 VTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLY 183

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
             M  +G+  D +T   +LR C GL     GR+VH ++IR      +DV + ++LI MY 
Sbjct: 184 HRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRY--GFESDVDVVNALITMYV 241

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG +  A  VF+    R       D + W +M+  Y  N    E ++L+  M      P
Sbjct: 242 KCGDIFSARLVFDRMPRR-------DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDP 294

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           D +   +VISAC   G  +LG E     VH Y ++ G
Sbjct: 295 DLMTMTSVISACEALGDERLGRE-----VHGYVIKTG 326


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 139/405 (34%), Positives = 220/405 (54%), Gaps = 14/405 (3%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
            F+N     P+N +IS + ++G    AL+ +  M  +GI  D Y  CS   A  + K  +
Sbjct: 329 NFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQ 388

Query: 104 FGKQVQAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           FG+ V   V K G  L  V V +A+ D Y+K   + D   +FD +  ++ V    L++ Y
Sbjct: 389 FGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAY 448

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            ++ L    L    LM   G   + FT S++L +CA L   E+GRQVH  + +    L  
Sbjct: 449 SQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCK--AGLDT 506

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +  ++S+LI+MY KCG +T+A +VF+          N D+V WT+++  Y ++G  ++ +
Sbjct: 507 EKCIESALIDMYAKCGSITEAGKVFDKIS-------NPDIVSWTAIISGYAQHGLVEDAL 559

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L+  M ++G K + V  + V+ ACSH G V+ G+ YF+ M   Y + P  EHY+C++DL
Sbjct: 560 QLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDL 619

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L R G LD A + I +M        +  +W  LL  C   G  ELG++AA+K L + P  
Sbjct: 620 LGRVGRLDDAMEFIRKM----PMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEY 675

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
              YV+LSN Y +   +++   LR +MK++G+KK+ G SWI V G
Sbjct: 676 SATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKG 720



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 165/353 (46%), Gaps = 30/353 (8%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
              +   N + +N +IS    NG  L A   F  M       + Y L S   A   + D 
Sbjct: 225 FNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDV 284

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA--NALLS 160
             GK+VQ   ++ G   +V VG+ALID+Y+K   +HDA  +FD   +   V    NA++S
Sbjct: 285 NMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMIS 344

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY ++      LEL   M   G+  D +T  ++  A A   + +FGR VH  M+ KC   
Sbjct: 345 GYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHG-MVLKC--- 400

Query: 221 GND---VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
           G D   V + +++ + Y KCG +    +VF+    R+E    +D+V WT+++  Y ++  
Sbjct: 401 GLDLMVVSVNNAIADAYSKCGFLEDVRKVFD----RME---ERDIVSWTTLVTAYSQSSL 453

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
            +E +  +  M   G  P++  F +V+ +C+    ++ G +     VH    + G +   
Sbjct: 454 GEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQ-----VHGLLCKAGLDTEK 508

Query: 338 C----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           C    L+D+  + G + +A K+ +++      +  +  W A++S     G  E
Sbjct: 509 CIESALIDMYAKCGSITEAGKVFDKI-----SNPDIVSWTAIISGYAQHGLVE 556



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 153/338 (45%), Gaps = 28/338 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN   + V+I     +G      K F  M   GI  D +A  + + +   +     GK V
Sbjct: 130 RNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMV 189

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A +   G+ + +FV ++L+++YAKL  I D+  +F+ +   N V  NA++SG     L 
Sbjct: 190 HAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLH 249

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN---LGNDVF 225
               +L   M       + +TL ++ +A   L     G++V     + C +   +  +V 
Sbjct: 250 LEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV-----QNCASELGIEGNVL 304

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI+MY KCG +  A  VF+   + +   +N     W +M+  Y ++G  +E ++LY
Sbjct: 305 VGTALIDMYSKCGSLHDARSVFDT--NFINCGVNTP---WNAMISGYSQSGCSQEALELY 359

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-----SCLV 340
             M  NG   D   + +V +A + +  ++ G      +VH   L+ G +       + + 
Sbjct: 360 VQMCQNGITSDLYTYCSVFNAIAASKSLQFG-----RVVHGMVLKCGLDLMVVSVNNAIA 414

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           D   + G L+   K+ + M +R      +  W  L++A
Sbjct: 415 DAYSKCGFLEDVRKVFDRMEER-----DIVSWTTLVTA 447



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 116/274 (42%), Gaps = 30/274 (10%)

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y+K      A  +FDE+P +N      ++ G  E  L+  G +    M   G+  D F 
Sbjct: 110 VYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFA 169

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
            SA++++C GL + E G+ VHA ++ +       +F+ +SL+ MY K G +  +  VFN+
Sbjct: 170 YSAIIQSCIGLDSLELGKMVHAQIVMR--GFATHIFVSTSLLNMYAKLGSIEDSYWVFNM 227

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                      + V W +M+     NG   E   L+  M      P+    V+V  A   
Sbjct: 228 MTEH-------NQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGK 280

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHG 365
              V +G E     V +   E G E      + L+D+  + G L  A      + D    
Sbjct: 281 LVDVNMGKE-----VQNCASELGIEGNVLVGTALIDMYSKCGSLHDA----RSVFDTNFI 331

Query: 366 SSSVSM-WGALLSACHDCGKFELGKLAAQKALEL 398
           +  V+  W A++S     G        +Q+ALEL
Sbjct: 332 NCGVNTPWNAMISGYSQSG-------CSQEALEL 358



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 21/195 (10%)

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +LR CA   +    + VH  +++      + + + +    +Y KC     A  VF+    
Sbjct: 70  VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 129

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
           R       +V  WT M+     +G F +  K +  ML +G  PD+ A+  +I +C     
Sbjct: 130 R-------NVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDS 182

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
           ++LG      MVH   +  G   +    + L+++  + G ++ ++ + N M +    S  
Sbjct: 183 LELG-----KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVS-- 235

Query: 369 VSMWGALLSACHDCG 383
              W A++S C   G
Sbjct: 236 ---WNAMISGCTSNG 247


>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 142/404 (35%), Positives = 218/404 (53%), Gaps = 21/404 (5%)

Query: 49  RNPLP-----FNVVISDFCRNGS-PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           R P P     +N ++  + R+      A +  + M   G+  DTY   S L A  + +  
Sbjct: 80  RIPTPGDVVWYNTLLRGYARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAG 139

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA-NALLSG 161
             G+Q      K+G     +V   LI++YA+      A  MF  +P  + V + NA+++ 
Sbjct: 140 EEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYNAMITA 199

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
              +      L L R M A GL     T++++L ACA L A E GR +H Y +RK   L 
Sbjct: 200 AVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALELGRWIHEY-VRKA-GLD 257

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           + V + ++LI+MYGKCG +  A+ VF       +G  ++D   W+ M+  Y  + Y +E 
Sbjct: 258 SLVKVNTALIDMYGKCGSLEDAIDVF-------QGMESRDRQAWSVMIVAYANHSYGREA 310

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           I L+E M   G +PD V F+ V+ ACSH+G V  G++YF+ M  +Y + PG +HY C+ D
Sbjct: 311 ISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVPGIKHYGCVTD 369

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           LL R+G+L+KA+K I+E+  +     +  +W  LLSAC   G  +LGK   ++ LELD  
Sbjct: 370 LLARSGQLEKAYKFIDELPIQ----PTAILWRTLLSACGSHGAVDLGKRVFERILELDDT 425

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +   YV+ SNL A    W+E+ ++R+LM EKG+ K  GCS IE+
Sbjct: 426 HGSDYVIFSNLCANTGKWEEMNRVRKLMNEKGVVKVPGCSSIEI 469


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 142/394 (36%), Positives = 213/394 (54%), Gaps = 13/394 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +++ + ++      LK F+ MH  G   D + L +       +     GKQV A+
Sbjct: 483 VAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAY 542

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
             KSG+   ++V S ++D+Y K   +  A+  FD IPV + V    ++SG  E       
Sbjct: 543 AIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERA 602

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
             +   M  +G+  D FT++ L +A + L+A E GRQ+HA  ++  C   ND F+ +SL+
Sbjct: 603 FHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT--NDPFVGTSLV 660

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KCG +  A  +F     R+E     ++  W +ML    ++G  KE ++L++ M   
Sbjct: 661 DMYAKCGSIDDAYCLFK----RIE---MMNITAWNAMLVGLAQHGEGKETLQLFKQMKSL 713

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G KPD+V F+ V+SACSH+G V    ++   M  DY ++P  EHYSCL D L RAG + +
Sbjct: 714 GIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQ 773

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
           A  LI  M       +S SM+  LL+AC   G  E GK  A K LEL+P +   YV+LSN
Sbjct: 774 AENLIESM----SMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSN 829

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +YA    WDE+   R +MK   +KKD G SWIEV
Sbjct: 830 MYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEV 863



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 195/418 (46%), Gaps = 32/418 (7%)

Query: 30  CRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYAL 89
           C+ +K  G        ++ R+ + +N VI+   +NG  + A+  F  +   G+  D Y +
Sbjct: 361 CKLRK-FGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTM 419

Query: 90  CSSLTASTSVKDA-RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
            S L A++S+ +     KQV  H  K   +S  FV +ALID Y++   + +AE++F+   
Sbjct: 420 TSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHN 479

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
             + V  NA+++GY ++      L+L  LM   G   D FTL+ + + C  L A   G+Q
Sbjct: 480 F-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQ 538

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           VHAY I+   +L  D+++ S +++MY KCG ++ A   F+            D V WT+M
Sbjct: 539 VHAYAIKSGYDL--DLWVSSGILDMYVKCGDMSAAQFAFDSIP-------VPDDVAWTTM 589

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +     NG  +    ++  M + G  PDE    T+  A S    ++ G +     +H   
Sbjct: 590 ISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ-----IHANA 644

Query: 329 LE----PGPEHYSCLVDLLCRAGELDKAWKLIN--EMLDRGHGSSSVSMWGALLS--ACH 380
           L+      P   + LVD+  + G +D A+ L    EM++       ++ W A+L   A H
Sbjct: 645 LKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN-------ITAWNAMLVGLAQH 697

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
             GK  L      K+L + P  V    +LS       + +    +R +  + G+K ++
Sbjct: 698 GEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEI 755



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 27/338 (7%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N  +S++  +G     LK F+ M    +  D       L  +  V     G+QV     K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            G    + V ++LI++Y KL     A  +FD +  ++ +  N++++G  +  L    + L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
              +   GL  D +T++++L+A + L       +QVH + I+   N  +D F+ ++LI+ 
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIK--INNVSDSFVSTALIDA 461

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y +   + +A  +F           N D+V W +M+  Y ++    + +KL+  M   G 
Sbjct: 462 YSRNRCMKEAEILFE--------RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGE 513

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           + D+    TV   C     +  G +     VH Y ++ G +     +DL   +G LD   
Sbjct: 514 RSDDFTLATVFKTCGFLFAINQGKQ-----VHAYAIKSGYD-----LDLWVSSGILDMYV 563

Query: 354 KLINEMLDRGHGSSSVSM-----WGALLSACHDCGKFE 386
           K   +M        S+ +     W  ++S C + G+ E
Sbjct: 564 K-CGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEE 600



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 21/232 (9%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L  + +  D   GK   A +         F+ + LI +Y+K   +  A  +FD++P ++ 
Sbjct: 46  LRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDL 105

Query: 153 VCANALLSGY-----CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           V  N++L+ Y     C  +       L R++    +     TLS +L+ C          
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASE 165

Query: 208 QVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
             H Y     C +G   D F+  +L+ +Y K G V +   +F    +R       DVVLW
Sbjct: 166 SFHGY----ACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-------DVVLW 214

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA---FVTVISACSHTGQVK 314
             ML  Y   G+ +E I L  A   +G  P+E+       +    S  GQVK
Sbjct: 215 NLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVK 266



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D   V   +  N  LS Y  +  ++  L+    M    ++ D  T   +L     + +  
Sbjct: 273 DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLA 332

Query: 205 FGRQVHAYMIRKCCNLGNDVFM--QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            G+QVH   ++    LG D+ +   +SLI MY K       L+ F  A    +    +D+
Sbjct: 333 LGQQVHCMALK----LGLDLMLTVSNSLINMYCK-------LRKFGFARTVFDNMSERDL 381

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           + W S++    +NG   E + L+  +L  G KPD+    +V+ A S
Sbjct: 382 ISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 102/253 (40%), Gaps = 50/253 (19%)

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G     FV  AL+++Y K   + + +++F+E+P ++ V  N +L  Y E       ++
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L     + GL+ +  TL  L R          G    A  ++   N GND    SS+ E+
Sbjct: 233 LSSAFHSSGLNPNEITLRLLARIS--------GDDSDAGQVKSFAN-GNDA---SSVSEI 280

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
                       +F   G                 L  Y  +G +  ++K +  M+ +  
Sbjct: 281 ------------IFRNKG-----------------LSEYLHSGQYSALLKCFADMVESDV 311

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGEL 349
           + D+V F+ +++       + LG +     VH   L+ G +      + L+++ C+  + 
Sbjct: 312 ECDQVTFILMLATAVKVDSLALGQQ-----VHCMALKLGLDLMLTVSNSLINMYCKLRKF 366

Query: 350 DKAWKLINEMLDR 362
             A  + + M +R
Sbjct: 367 GFARTVFDNMSER 379


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 225/399 (56%), Gaps = 16/399 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + ++ +I+ + +NG    A + F  MH  G     +     L A + +     GKQ 
Sbjct: 289 RNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQT 348

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI-PVKNSVCANALLSGYCEAKL 167
              + K G+ + V+V SAL+D+YAK   I DA+  F ++  V + V   A+++G+ +   
Sbjct: 349 HCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGE 408

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               L L   M   G+   + T++++LRACA L+A + G+Q+HA +++   +LG  V   
Sbjct: 409 HEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKCRFSLGGSV--G 466

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L  MY KCG +  ++ VF     R+    ++DV+ W S++ V+ ++G   + + ++E 
Sbjct: 467 TALSTMYSKCGNLEDSMVVFR----RMP---DRDVISWNSIISVFSQHGRGSDALDMFEE 519

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M + GT PD + F+ ++SACSH G V  G  YF  M  DY L P  +HY+C+VD+L RAG
Sbjct: 520 MKLEGTAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDILSRAG 579

Query: 348 ELDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           +L +A   I+ + +D G       +W  +L AC     F++G  A ++ +EL   +   Y
Sbjct: 580 QLKEAKDFIDSITIDHG-----TCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAY 634

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           ++LSN+YA    W+++ ++R LM+ +G+ KD+GCSW+E+
Sbjct: 635 ILLSNIYAAQRKWNDVERVRHLMRLRGVSKDLGCSWVEL 673



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 135/271 (49%), Gaps = 19/271 (7%)

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           ++VFV +AL+++Y KL  + DA+ +FD +  +N+V   A++SGY   K      EL RLM
Sbjct: 156 NNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLM 215

Query: 179 -PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
                L+ + F  +A+L A +       G Q+H  +++    L   V +++SL+ MY K 
Sbjct: 216 LQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKD--GLVGFVSVENSLVTMYAKA 273

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
             +  A++VF  +  R       + + W++M+  Y +NG      +++  M  +G  P E
Sbjct: 274 ECMDAAMRVFGSSKER-------NSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTE 326

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKL 355
             FV V++ACS  G + +G +    MV   KL    + Y  S LVD+  + G +  A   
Sbjct: 327 FTFVGVLNACSDMGALVVGKQTHCLMV---KLGFETQVYVKSALVDMYAKCGCIGDAKDG 383

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            +++ D       V +W A+++     G+ E
Sbjct: 384 FHQLYD----VDDVVLWTAMITGHVQNGEHE 410


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 139/405 (34%), Positives = 220/405 (54%), Gaps = 14/405 (3%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
            F+N     P+N +IS + ++G    AL+ +  M  +GI  D Y  CS   A  + K  +
Sbjct: 383 NFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQ 442

Query: 104 FGKQVQAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           FG+ V   V K G  L  V V +A+ D Y+K   + D   +FD +  ++ V    L++ Y
Sbjct: 443 FGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAY 502

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            ++ L    L    LM   G   + FT S++L +CA L   E+GRQVH  + +    L  
Sbjct: 503 SQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCK--AGLDT 560

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +  ++S+LI+MY KCG +T+A +VF+          N D+V WT+++  Y ++G  ++ +
Sbjct: 561 EKCIESALIDMYAKCGSITEAGKVFDKIS-------NPDIVSWTAIISGYAQHGLVEDAL 613

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L+  M ++G K + V  + V+ ACSH G V+ G+ YF+ M   Y + P  EHY+C++DL
Sbjct: 614 QLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDL 673

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L R G LD A + I +M        +  +W  LL  C   G  ELG++AA+K L + P  
Sbjct: 674 LGRVGRLDDAMEFIRKM----PMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEY 729

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
              YV+LSN Y +   +++   LR +MK++G+KK+ G SWI V G
Sbjct: 730 SATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKG 774



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 185/408 (45%), Gaps = 34/408 (8%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTN---CLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFS 75
           F + + +  +       LG++ +       +   N + +N +IS    NG  L A   F 
Sbjct: 252 FATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFV 311

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            M       + Y L S   A   + D   GK+VQ   ++ G   +V VG+ALID+Y+K  
Sbjct: 312 RMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCG 371

Query: 136 LIHDAELMFDEIPVKNSVCA--NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
            +HDA  +FD   +   V    NA++SGY ++      LEL   M   G+  D +T  ++
Sbjct: 372 SLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSV 431

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGND---VFMQSSLIEMYGKCGLVTKALQVFNLA 250
             A A   + +FGR VH  M+ KC   G D   V + +++ + Y KCG +    +VF+  
Sbjct: 432 FNAIAASKSLQFGRVVHG-MVLKC---GLDLMVVSVNNAIADAYSKCGFLEDVRKVFD-- 485

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
             R+E    +D+V WT+++  Y ++   +E +  +  M   G  P++  F +V+ +C+  
Sbjct: 486 --RME---ERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASL 540

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDRGHGS 366
             ++ G +     VH    + G +   C    L+D+  + G + +A K+ +++      +
Sbjct: 541 CFLEYGRQ-----VHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKI-----SN 590

Query: 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
             +  W A++S     G  E   L   + +EL         +L  L+A
Sbjct: 591 PDIVSWTAIISGYAQHGLVE-DALQLFRRMELSGIKANAVTLLCVLFA 637



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 153/338 (45%), Gaps = 28/338 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN   + V+I     +G      K F  M   GI  D +A  + + +   +     GK V
Sbjct: 184 RNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMV 243

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A +   G+ + +FV ++L+++YAKL  I D+  +F+ +   N V  NA++SG     L 
Sbjct: 244 HAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLH 303

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN---LGNDVF 225
               +L   M       + +TL ++ +A   L     G++V     + C +   +  +V 
Sbjct: 304 LEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV-----QNCASELGIEGNVL 358

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI+MY KCG +  A  VF+   + +   +N     W +M+  Y ++G  +E ++LY
Sbjct: 359 VGTALIDMYSKCGSLHDARSVFDT--NFINCGVNTP---WNAMISGYSQSGCSQEALELY 413

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-----SCLV 340
             M  NG   D   + +V +A + +  ++ G      +VH   L+ G +       + + 
Sbjct: 414 VQMCQNGITSDLYTYCSVFNAIAASKSLQFG-----RVVHGMVLKCGLDLMVVSVNNAIA 468

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           D   + G L+   K+ + M +R      +  W  L++A
Sbjct: 469 DAYSKCGFLEDVRKVFDRMEER-----DIVSWTTLVTA 501



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 116/274 (42%), Gaps = 30/274 (10%)

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y+K      A  +FDE+P +N      ++ G  E  L+  G +    M   G+  D F 
Sbjct: 164 VYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFA 223

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
            SA++++C GL + E G+ VHA ++ +       +F+ +SL+ MY K G +  +  VFN+
Sbjct: 224 YSAIIQSCIGLDSLELGKMVHAQIVMR--GFATHIFVSTSLLNMYAKLGSIEDSYWVFNM 281

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                      + V W +M+     NG   E   L+  M      P+    V+V  A   
Sbjct: 282 M-------TEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGK 334

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHG 365
              V +G E     V +   E G E      + L+D+  + G L  A      + D    
Sbjct: 335 LVDVNMGKE-----VQNCASELGIEGNVLVGTALIDMYSKCGSLHDA----RSVFDTNFI 385

Query: 366 SSSVSM-WGALLSACHDCGKFELGKLAAQKALEL 398
           +  V+  W A++S     G        +Q+ALEL
Sbjct: 386 NCGVNTPWNAMISGYSQSG-------CSQEALEL 412



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 21/195 (10%)

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +LR CA   +    + VH  +++      + + + +    +Y KC     A  VF+    
Sbjct: 124 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQ 183

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
           R       +V  WT M+     +G F +  K +  ML +G  PD+ A+  +I +C     
Sbjct: 184 R-------NVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDS 236

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
           ++LG      MVH   +  G   +    + L+++  + G ++ ++ + N M +    S  
Sbjct: 237 LELGK-----MVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVS-- 289

Query: 369 VSMWGALLSACHDCG 383
              W A++S C   G
Sbjct: 290 ---WNAMISGCTSNG 301


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 155/448 (34%), Positives = 232/448 (51%), Gaps = 23/448 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H     +G LL   I   S L+  Y  C H   L       + +  +  + +N +IS +
Sbjct: 229 IHEELINSGFLLDSFI--SSALVDMYGKCGH---LEMAIEIFEQMPKKTVVAWNSMISGY 283

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF--GKQVQAHVTKSGWLS 119
              G  +  ++ F  M+  G+   T    SSL    S + AR   GK V  +  ++    
Sbjct: 284 GLKGDIISCIQLFKRMYNEGV-KPTLTTLSSLIMVCS-RSARLLEGKFVHGYTIRNRIQP 341

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY-CEAKLWAGGLELVRLM 178
            VFV S+L+DLY K   +  AE +F  IP    V  N ++SGY  E KL+   L L   M
Sbjct: 342 DVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEA-LGLFSEM 400

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
               ++ D  T +++L AC+ L+A E G+++H  +I K   L N+  +  +L++MY KCG
Sbjct: 401 RKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEK--KLDNNEVVMGALLDMYAKCG 458

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            V +A  VF     R       D+V WTSM+  YG +G+    ++L+  ML +  KPD V
Sbjct: 459 AVDEAFSVFKCLPKR-------DLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRV 511

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           AF+ ++SAC H G V  G  YF  M++ Y + P  EHYSCL+DLL RAG L +A++++ +
Sbjct: 512 AFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
                     V +   L SAC      +LG   A+  ++ DP +   Y++LSN+YA    
Sbjct: 572 ---NPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHK 628

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           WDE+  +R  MKE GLKK+ GCSWIE+ 
Sbjct: 629 WDEVRVVRSKMKELGLKKNPGCSWIEIN 656



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 160/342 (46%), Gaps = 27/342 (7%)

Query: 45  FLNPRNPLP---FNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSSLTASTSVK 100
           F N  NP     +N +++ + +N   + AL+ F   +H   +  D+Y   S   A   + 
Sbjct: 61  FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLH 120

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
               GK +   + K+G +  + VGS+L+ +Y K      A  +F+E+P K+  C N ++S
Sbjct: 121 RYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVIS 180

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            Y ++  +   LE   LM   G + +  T++  + +CA L     G ++H  +I     L
Sbjct: 181 CYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLL 240

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             D F+ S+L++MYGKCG +  A+++F       E    K VV W SM+  YG  G    
Sbjct: 241 --DSFISSALVDMYGKCGHLEMAIEIF-------EQMPKKTVVAWNSMISGYGLKGDIIS 291

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY----KLEPGPEHY 336
            I+L++ M   G KP      ++I  CS + ++  G       VH Y    +++P     
Sbjct: 292 CIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEG-----KFVHGYTIRNRIQPDVFVN 346

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           S L+DL  + G+++ A K+   +       S V  W  ++S 
Sbjct: 347 SSLMDLYFKCGKVELAEKIFKLI-----PKSKVVSWNVMISG 383



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 25/233 (10%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           D   L  LLRAC    + + G+ +H  ++     L ND+F+  +LI  Y  C L   A  
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVV--TLGLQNDIFLCKTLINQYLSCHLYDHAKC 59

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVTVI 304
           VF+   +  E      + LW  ++  Y +N  + E ++L+E +L     KPD   + +V 
Sbjct: 60  VFDNMENPCE------ISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVF 113

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEML 360
            AC    +  LG      M+H   ++ G        S LV +  +    +KA  L NEM 
Sbjct: 114 KACGGLHRYVLG-----KMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMP 168

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYVMLSN 411
           ++      V+ W  ++S  +  G F+  L      +    +P++V I   +S+
Sbjct: 169 EK-----DVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISS 216


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 217/391 (55%), Gaps = 13/391 (3%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N +I  +  +   L+++  ++ M  +GIF D+    + L +   +     GK +   + +
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            G+ S+V+V +AL+++Y     + DA  +FDEIP +N V  NAL++GY   +++   +++
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M   G      T+  +L ACA L A   GR +  Y+      L  +VF+ ++LI+MY
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRL--NVFVGTALIDMY 288

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG+V +A ++F     R+     K+V  W  ++  Y  NG  +  ++ +  M+M   K
Sbjct: 289 AKCGVVDEAEKIFK--AMRV-----KNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFK 341

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           PDEV F+ V+ AC H G V  G  YF  M  ++ L P  EHY C+VDLL RAG LD+A +
Sbjct: 342 PDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQ 401

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
           LI  M           +W  LL AC   G  +LG+ A +K LEL+P+N   YV+L+NLYA
Sbjct: 402 LIQAM----SMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYA 457

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +   WD++G++RE+M  + ++K  GCS IE+
Sbjct: 458 RDQRWDKVGEVREMMDCRRVRKVPGCSSIEI 488



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 141/303 (46%), Gaps = 29/303 (9%)

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH--------- 138
            LC +    T  K +   K +  H   +  LS + +    ID    + LI          
Sbjct: 33  TLCENPPQITESKHSHLTKSISNHAHMNQMLSQMIMNYIPIDHLNLMKLIDFSVSSHGFA 92

Query: 139 DAELMFDEIP--VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
            + L+F +    + + +C N+++  Y ++      + +   M   G+  D  T   +L++
Sbjct: 93  ASALLFTQFYGFIDSDLC-NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKS 151

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            A L   E G+ +H  +I+      ++V++ ++L+ MYG C  V+ A QVF+        
Sbjct: 152 VAQLCRQELGKAIHCCIIQ--MGFESNVYVSTALVNMYGTCSSVSDARQVFD-------- 201

Query: 257 EI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
           EI ++++V W +++  Y  N  F++VI ++  M + G KP EV  V V+ AC+H G +  
Sbjct: 202 EIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQ 261

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G    +++ H+ +L       + L+D+  + G +D+A K+   M  +     +V  W  L
Sbjct: 262 GRWIDDYIDHN-RLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVK-----NVYTWNVL 315

Query: 376 LSA 378
           +S 
Sbjct: 316 ISG 318


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/431 (30%), Positives = 230/431 (53%), Gaps = 17/431 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I   S L+  Y  CR    +          N  + + F  +IS +  NG  + AL+ F +
Sbjct: 371 IFLTSALIDAYFKCR---GVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRW 427

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           +    I  +   L S L     +   + G+++   + K G+ +   +G A+ID+YAK   
Sbjct: 428 LVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 487

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           ++ A  +F  +  ++ V  N++++   ++   +  +++ R M   G+ +D  ++SA L A
Sbjct: 488 MNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSA 547

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA L +  FG+ +H +MI+   +L  DV+ +S+LI+MY KCG +  A+ VF+        
Sbjct: 548 CANLPSESFGKAIHGFMIKH--SLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKE---- 601

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKL 315
              K++V W S++  YG +G  K+ + L+  M+  +G +PD++ F+ +IS C H G V  
Sbjct: 602 ---KNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDE 658

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G+ +F  M  DY ++P  EHY+C+VDL  RAG L +A++ +  M           +WG L
Sbjct: 659 GVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSM----PFPPDAGVWGTL 714

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L A       EL K+A+ + ++LDP N G YV++SN +A    W+ + ++R LMKE+ ++
Sbjct: 715 LGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREVQ 774

Query: 436 KDVGCSWIEVT 446
           K  G SWIE+ 
Sbjct: 775 KIPGYSWIEIN 785



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 164/349 (46%), Gaps = 25/349 (7%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + ++  + + +N +IS + ++G    +L  F  M   G+  D     S L + +  ++ 
Sbjct: 293 FRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENL 352

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
            + +Q+  ++ +      +F+ SALID Y K   +  A+ +F +    + V   A++SGY
Sbjct: 353 EYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGY 412

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC----C 218
               L    LE+ R +  + +  +  TL ++L    GL A + GR++H ++I+K     C
Sbjct: 413 LHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRC 472

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           N+G       ++I+MY KCG +  A ++F     R       D+V W SM+    ++   
Sbjct: 473 NIG------CAVIDMYAKCGRMNLAYEIFGRLSKR-------DIVSWNSMITRCAQSDNP 519

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPEHYS 337
              I ++  M ++G   D V+    +SAC++      G     +M+ H   L+   E  S
Sbjct: 520 SAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSE--S 577

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            L+D+  + G L  A  + + M ++     ++  W ++++A  + GK +
Sbjct: 578 TLIDMYAKCGNLKAAMNVFDTMKEK-----NIVSWNSIIAAYGNHGKLK 621



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 159/330 (48%), Gaps = 23/330 (6%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +NV+++ + + G+    +K FS M +  I  +       L+   S      G Q+   V 
Sbjct: 203 WNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVV 262

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            SG      + ++L+ +Y+K     DA  +F  +   ++V  N ++SGY ++ L    L 
Sbjct: 263 VSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLI 322

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M + G+  D  T S+LL + +     E+ RQ+H Y++R   +L  D+F+ S+LI+ 
Sbjct: 323 FFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISL--DIFLTSALIDA 380

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KC  V+ A ++F+          + DVV++T+M+  Y  NG   + ++++  ++    
Sbjct: 381 YFKCRGVSMAQKIFSQCN-------SVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKI 433

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGEL 349
            P+E+  V+++        +KLG E     +H + ++ G ++       ++D+  + G +
Sbjct: 434 SPNEITLVSILPVIGGLLALKLGRE-----LHGFIIKKGFDNRCNIGCAVIDMYAKCGRM 488

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           + A+++   +  R      +  W ++++ C
Sbjct: 489 NLAYEIFGRLSKR-----DIVSWNSMITRC 513



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 130/292 (44%), Gaps = 20/292 (6%)

Query: 22  RLMLPYTTCRHKKNLGTLTNCLKF---LNPR--NPLPFNVVISDFCRNGSPLYALKTFSF 76
           R++  Y  C      G+ +NC K    L+ R  +  P+N +IS F R G    AL  +  
Sbjct: 71  RILGMYAMC------GSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFK 124

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D       + A  ++K+ +  + +   V+  G   + FV S+LI  Y +   
Sbjct: 125 MLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGK 184

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I  A  +FD +  K+ V  N +L+GY +       ++   LM    +  +  T   +L  
Sbjct: 185 IDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSV 244

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA     + G Q+H  ++    +    +  ++SL+ MY KCG    A+++F +       
Sbjct: 245 CASKLLIDLGVQLHGLVVVSGLDFEGSI--KNSLLSMYSKCGRFDDAIKLFRMMSR---- 298

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               D V W  M+  Y ++G  +E +  +  M+ +G  PD + F +++ + S
Sbjct: 299 ---ADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVS 347



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 15/223 (6%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           LS LL+ C+ L+    G+QVHA++I     +  D +    ++ MY  CG  +   ++F  
Sbjct: 34  LSLLLQDCSNLTLLRQGKQVHAFVIVN--RISGDSYTDERILGMYAMCGSFSNCGKMF-- 89

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
             +RL+  ++  +  W S++  + R G   + +  Y  ML  G  PD   F  ++ AC  
Sbjct: 90  --YRLDSRLSS-IRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVA 146

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
               K GIE+    V    ++      S L+      G++D A KL + +L +       
Sbjct: 147 LKNFK-GIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQK-----DC 200

Query: 370 SMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYVMLS 410
            +W  +L+    CG  +  +   +  +  ++ P+ V    +LS
Sbjct: 201 VIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLS 243



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 122/302 (40%), Gaps = 29/302 (9%)

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           CS+LT        R GKQV A V  +      +    ++ +YA      +   MF  +  
Sbjct: 41  CSNLTL------LRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDS 94

Query: 150 KNSVCA--NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS---AAE 204
           + S     N+++S +    L    L     M   G+  D  T   L++AC  L      E
Sbjct: 95  RLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIE 154

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
           F     + +   C     + F+ SSLI+ Y + G +       ++AG   +  + KD V+
Sbjct: 155 FLSDTVSSLGMDC-----NEFVASSLIKAYLEYGKI-------DVAGKLFDRVLQKDCVI 202

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W  ML  Y + G    VIK +  M M+   P+ V F  V+S C+    + LG++    +V
Sbjct: 203 WNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQ-LHGLV 261

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
               L+      + L+ +  + G  D A KL   M+ R    +    W  ++S     G 
Sbjct: 262 VVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLF-RMMSRADTVT----WNCMISGYVQSGL 316

Query: 385 FE 386
            E
Sbjct: 317 ME 318


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 135/397 (34%), Positives = 219/397 (55%), Gaps = 11/397 (2%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +   G    AL+ F+ M    +  D   + + L+  T   +   G+Q+
Sbjct: 173 KDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQI 232

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +   G+ S++ + +ALIDLY+K   +  A  +F+ +  K+ +  N L+ GY      
Sbjct: 233 HSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHH 292

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L + + M  LG   +  T+ ++L ACA L A + GR +H Y+ +K   +  +  +Q+
Sbjct: 293 KEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQT 352

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A QVF+         +NK +    +M+  +  +G       L   M
Sbjct: 353 SLIDMYAKCGNIEAANQVFDTI-------LNKSLSSCNAMIFGFAMHGRADAAFDLLSRM 405

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G +PD++ FV ++SACSH G   LG + F+ M  DY++EP  EHY C++DLL R+G 
Sbjct: 406 KKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGL 465

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +A +LIN M     G     +WG+LL AC      ELG+L AQK ++++P N G YV+
Sbjct: 466 FKEAEELINSMTMEPDG----VIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVL 521

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    WD++ ++R L+ +KGLKK  GCS IE+
Sbjct: 522 LSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEI 558



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 193/407 (47%), Gaps = 54/407 (13%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           +  K +   N L +N +I     +  P+ AL  + +M   G+  ++Y       +    K
Sbjct: 33  SVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSK 92

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA-------------------- 140
            A+ GKQ+ A + K G    + V ++LI +YA+  ++ DA                    
Sbjct: 93  AAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMIT 152

Query: 141 -----------ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
                      + MFDEIP+K+ V  NA++SGY E   +   LEL   M  + +  D  T
Sbjct: 153 GYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDEST 212

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           ++ +L  C      E GRQ+H+++       G+++ + ++LI++Y KCG + +A  +F  
Sbjct: 213 MATVLSTCTHSGNVELGRQIHSWIDNH--GFGSNLKLVNALIDLYSKCGEMERAHGLF-- 268

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                EG   KDV+ W +++G Y    + KE + +++ ML  G  P++V  ++++ AC+H
Sbjct: 269 -----EGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAH 323

Query: 310 TGQVKLGIEYFEWMVH---DYKLE---PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
            G + +G     W +H   D KL+         + L+D+  + G ++ A ++ + +L++ 
Sbjct: 324 LGAIDIG----RW-IHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKS 378

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
             S +  ++G  +    D   F+L  L+  K   ++P ++    +LS
Sbjct: 379 LSSCNAMIFGFAMHGRADAA-FDL--LSRMKKDGIEPDDITFVGLLS 422


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  234 bits (596), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 230/432 (53%), Gaps = 22/432 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I  QS L+  Y+         ++ + +K    R+ + +  VIS FC+N     AL  F  
Sbjct: 377 ITIQSALLTMYSKFGDSNYANSIFSTMK---ERDVVAWGSVISGFCQNRKYKEALDFFRA 433

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M    +  D+  + S ++A T ++    G  +   V KSG    VFV S+L+D+Y+K   
Sbjct: 434 MEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGF 493

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
              A  +F ++P+KN V  N+++S YC   L    + L   +    L  D  + +++L A
Sbjct: 494 PERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAA 553

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            + ++A   G+ VH Y++R       D+ ++++LI+MY KCGL+  A  +F       E 
Sbjct: 554 ISSVAALLKGKSVHGYLVRLWIPF--DLQVENTLIDMYIKCGLLKYAQHIF-------ER 604

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              K++V W SM+G YG +G   + I+L++ M  +G KPD+V F++++S+C+H+G ++ G
Sbjct: 605 ISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEG 664

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM---LDRGHGSSSVSMWG 373
           +  FE M   + +EP  EHY  +VDL  RAG L  A+  +  M    DR       S+W 
Sbjct: 665 LHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDR-------SIWL 717

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           +LL +C      ELG++ A K L ++P     YV L NLY +  +WD    LR  MKEKG
Sbjct: 718 SLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKG 777

Query: 434 LKKDVGCSWIEV 445
           LKK  GCSWIEV
Sbjct: 778 LKKTPGCSWIEV 789



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 168/371 (45%), Gaps = 52/371 (14%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +  NG    AL+ +  M +  +  D++ + + LT+S+       G+ +   + 
Sbjct: 310 WNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIV 369

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K    SS+ + SAL+ +Y+K    + A  +F  +  ++ V   +++SG+C+ + +   L+
Sbjct: 370 KRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALD 429

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
             R M A  +  D   +++++ AC GL   + G  +H ++I+    L  DVF+ SSL++M
Sbjct: 430 FFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQL--DVFVASSLLDM 487

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G   +A  +F+           K++V W S++  Y RN      I L+  +L N  
Sbjct: 488 YSKFGFPERAGNIFSDMPL-------KNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDL 540

Query: 294 KPDEVAFVTVISACSHT-----GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA-- 346
            PD V+F +V++A S       G+   G     W+  D ++E      + L+D+  +   
Sbjct: 541 YPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVE------NTLIDMYIKCGL 594

Query: 347 -----------------------------GELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
                                        GE  KA +L +EM   G     V+   +LLS
Sbjct: 595 LKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFL-SLLS 653

Query: 378 ACHDCGKFELG 388
           +C+  G  E G
Sbjct: 654 SCNHSGLIEEG 664



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 152/320 (47%), Gaps = 18/320 (5%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           K  +  N + +NV+I  F  NG    +L+ +       + + + +   +L+A    +   
Sbjct: 199 KLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVS 258

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           FGKQV     K G+    +V ++L+ +Y K  +I  AE +F+E+P K     NAL+S Y 
Sbjct: 259 FGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYV 318

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
                   L + + M    +  D FT+  +L + +     + GR +H  ++++   L + 
Sbjct: 319 GNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKR--PLQSS 376

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           + +QS+L+ MY K G    A  +F+    R       DVV W S++  + +N  +KE + 
Sbjct: 377 ITIQSALLTMYSKFGDSNYANSIFSTMKER-------DVVAWGSVISGFCQNRKYKEALD 429

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE----HYSCL 339
            + AM  +  KPD     ++ISAC+   +V LG       +H + ++ G +      S L
Sbjct: 430 FFRAMEADLVKPDSDIMASIISACTGLEKVDLGC-----TIHGFVIKSGLQLDVFVASSL 484

Query: 340 VDLLCRAGELDKAWKLINEM 359
           +D+  + G  ++A  + ++M
Sbjct: 485 LDMYSKFGFPERAGNIFSDM 504



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 138/307 (44%), Gaps = 49/307 (15%)

Query: 82  IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE 141
           ++   +   S L A  S+ + ++GK + + +  +G  S  ++ S+LI++Y K     DA 
Sbjct: 49  VYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAV 108

Query: 142 LMFDEIP-----VKNSVCANALLSGYCE-AKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
            +FD++P     V +    N+++ GY    +L  G ++  R+                  
Sbjct: 109 KVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQS---------------- 152

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
                S  + G+Q+H+Y++R   N   D F++++LI+ Y KCG  T+A  +F     R  
Sbjct: 153 -----SGYKEGKQIHSYIVRNMLNF--DPFLETALIDTYFKCGRPTEARYLFKKLKDR-- 203

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
                ++V W  M+G +G NG ++  ++ Y        K    +F   +SAC     V  
Sbjct: 204 ----SNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSF 259

Query: 316 GIEYFEWMVH----DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
           G +     VH        E  P  ++ L+ +  +   ++ A K+ NE+ D+      + +
Sbjct: 260 GKQ-----VHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDK-----EIEL 309

Query: 372 WGALLSA 378
           W AL+SA
Sbjct: 310 WNALISA 316


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  234 bits (596), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 143/406 (35%), Positives = 220/406 (54%), Gaps = 18/406 (4%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLY----ALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           +  +P + + +N ++  + R G        A + F  M   G+  DTY   S L A  S 
Sbjct: 92  RIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASA 151

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           +    G+Q      K+G     +V   LI++YA+   +  A +MFD +  +  V  NA++
Sbjct: 152 RAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMI 211

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           +    + L    L L R M A GL     TL ++L ACA L A E GR +H Y IRK   
Sbjct: 212 TASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDY-IRK-MR 269

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L + V + ++LI+MY KCG +  A+ VF       +   ++D   W+ M+  Y  +GY +
Sbjct: 270 LDSLVKVNTALIDMYAKCGSLEDAIGVF-------QDMESRDKQAWSVMMVAYANHGYGR 322

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E I ++E M   G KPD+V F+ V+ ACSH+G V  G++YF+ M  +Y +  G +HY C+
Sbjct: 323 EAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCV 381

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
            DLL R+G+L++A+K I+E+  +     +  +W  LLSAC   G  ++GK   ++ LELD
Sbjct: 382 TDLLARSGQLERAYKFIDELPIK----PTAILWRTLLSACAGHGDVDMGKRVFERILELD 437

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             + G YV+ SNL A    W+E+  +R+LM EKG+ K  GCS IE+
Sbjct: 438 DSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEI 483


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  234 bits (596), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 225/399 (56%), Gaps = 16/399 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +NV+IS +  +G   YA   F  +         +   + L+ +++  D   G+Q+
Sbjct: 314 QDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQI 373

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A    +   S + VG++L+D+YAK     +AE++F  +  +++V   A++S Y +   +
Sbjct: 374 HAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFY 433

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GL+L   M    +  D  T ++LLRA A +++   G+Q+H+++I+      ++VF  S
Sbjct: 434 EEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIK--SGFMSNVFSGS 491

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+++Y KCG +  A+Q F     R       ++V W +M+  Y +NG  +  +K ++ M
Sbjct: 492 ALLDVYAKCGSIKDAVQTFQEMPDR-------NIVSWNAMISAYAQNGEAEATLKSFKEM 544

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           +++G +PD V+F+ V+SACSH+G V+ G+ +F  M   YKL+P  EHY+ +VD+LCR+G 
Sbjct: 545 VLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGR 604

Query: 349 LDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIY 406
            ++A KL+ EM +D         MW ++L+AC      EL + AA +   ++   +   Y
Sbjct: 605 FNEAEKLMAEMPIDPDE-----IMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPY 659

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           V +SN+YA    W+ + ++ + M+++G+KK    SW+E+
Sbjct: 660 VNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEI 698



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 166/345 (48%), Gaps = 31/345 (8%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           + + +N +I+ + ++G    A+  F  M   G+    +   + L A+  + D   G+Q+ 
Sbjct: 214 DSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIH 273

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           + V K+ ++ +VFV +AL+D Y+K   + DA  +FDE+P ++ V  N ++SGY     W 
Sbjct: 274 SFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYA----WD 329

Query: 170 G----GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           G      +L R +     D   F  + +L   +     E GRQ+HA  I    +  +++ 
Sbjct: 330 GKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTAD--SEIL 387

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +SL++MY KCG   +A  +F    HR         V WT+M+  Y + G+++E ++L+
Sbjct: 388 VGNSLVDMYAKCGKFEEAEMIFTNLTHR-------SAVPWTAMISAYVQKGFYEEGLQLF 440

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
             M       D+  F +++ A +    + LG +     +H + ++ G        S L+D
Sbjct: 441 NKMRQASVIADQATFASLLRASASIASLSLGKQ-----LHSFIIKSGFMSNVFSGSALLD 495

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           +  + G +  A +   EM DR     ++  W A++SA    G+ E
Sbjct: 496 VYAKCGSIKDAVQTFQEMPDR-----NIVSWNAMISAYAQNGEAE 535



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 138/318 (43%), Gaps = 43/318 (13%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R+ +P+  +IS + + G     L+ F+ M    +  D     S L AS S+     G
Sbjct: 412 LTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLG 471

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ + + KSG++S+VF GSAL+D+YAK   I DA   F E+P +N V  NA++S Y + 
Sbjct: 472 KQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQN 531

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L+  + M   GL  D  +   +L AC+                           
Sbjct: 532 GEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS--------------------------- 564

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
                       GLV + L  FN      + +  ++   + S++ +  R+G F E  KL 
Sbjct: 565 ----------HSGLVEEGLWHFNSMTQIYKLDPRRE--HYASVVDMLCRSGRFNEAEKLM 612

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M ++   PDE+ + +V++AC      +L     + + +  +L      Y  + ++   
Sbjct: 613 AEMPID---PDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAP-YVNMSNIYAA 668

Query: 346 AGELDKAWKLINEMLDRG 363
           AG+ +   K+   M DRG
Sbjct: 669 AGQWENVSKVHKAMRDRG 686



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 156/357 (43%), Gaps = 21/357 (5%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           NLG        +  R  + + ++I  + +      A + F  M   G   D     + L+
Sbjct: 98  NLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLS 157

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
                +      QVQ  + K G+ S + VG+ L+D Y K   +  A  +F E+P  +SV 
Sbjct: 158 GCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVS 217

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            NA+++GY +  L    + L   M   GL    FT +A+L A  GL     G+Q+H+++I
Sbjct: 218 YNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVI 277

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           +   N   +VF+ ++L++ Y K   V  A ++F+           +D V +  ++  Y  
Sbjct: 278 K--TNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPE-------QDGVSYNVIISGYAW 328

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV---HDYKLEP 331
           +G  K    L+  +        +  F T++S  S+T   ++G +     +    D ++  
Sbjct: 329 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILV 388

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           G    + LVD+  + G+ ++A  +   +  R     S   W A++SA    G +E G
Sbjct: 389 G----NSLVDMYAKCGKFEEAEMIFTNLTHR-----SAVPWTAMISAYVQKGFYEEG 436



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 110/253 (43%), Gaps = 22/253 (8%)

Query: 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYD 186
           +I  Y K   + +A  +FD +  + +V    L+ GY +   +    EL   M   G + D
Sbjct: 89  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 148

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKAL 244
           + T   LL  C G        QV   +I+    LG D  + + ++L++ Y K   +  A 
Sbjct: 149 YVTFVTLLSGCNGHEMGNQITQVQTQIIK----LGYDSRLIVGNTLVDSYCKSNRLDLAC 204

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           Q+F     +   EI  D V + +M+  Y ++G  ++ + L+  M  +G KP E  F  V+
Sbjct: 205 QLF-----KEMPEI--DSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL 257

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEP----GPEHYSCLVDLLCRAGELDKAWKLINEML 360
            A      + LG +     +H + ++          + L+D   +   +  A KL +EM 
Sbjct: 258 CANIGLDDIVLGQQ-----IHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP 312

Query: 361 DRGHGSSSVSMWG 373
           ++   S +V + G
Sbjct: 313 EQDGVSYNVIISG 325


>gi|357117625|ref|XP_003560564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g16470-like [Brachypodium distachyon]
          Length = 435

 Score =  234 bits (596), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 137/378 (36%), Positives = 211/378 (55%), Gaps = 15/378 (3%)

Query: 72  KTFSFMHVHGI--FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           +  S +H   +  F  TYAL   L    + +DAR GK++ A +  +G+  + ++ + L+ 
Sbjct: 21  QAVSLLHRRTVCPFSRTYALL--LQECVNRRDARVGKRIHARMISTGFNCNDYMATKLLI 78

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
            YAK+  +  A  +FD +P +  V  NAL+SG     L +  LE+   M A GL  D FT
Sbjct: 79  FYAKIGELGVARNLFDGMPRRGVVAWNALISGCTRGGLESQALEMFGSMRAEGLRPDQFT 138

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
            S++L ACA L+A + G +VH  M+ K   +G +VF  S+L++MY KC     A + F  
Sbjct: 139 FSSVLCACARLAALQHGWRVHGVMV-KSDVVGGNVFANSALVDMYLKCSSTEDARRAFAA 197

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
           A  R       +V +WT+++  +G++G+  E + L++ M  +G +P++V F+ V+SAC+H
Sbjct: 198 APER-------NVTMWTAVISGHGQHGHVGEALALFDQMTRDGFRPNDVTFLAVLSACAH 250

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
            G V  G+ +F  M  DY L P  EHY+ +VD+L R G L  A++L+  + D    S   
Sbjct: 251 GGLVDEGLRHFSSMPLDYGLTPKSEHYAAVVDMLARVGRLHDAYELVKNLPDCQEHS--- 307

Query: 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
            +WGALL AC   G   L +LAA++   L P N G YV+L+N YA   MWD +    E M
Sbjct: 308 VVWGALLGACRKHGDVRLVELAARRFFRLQPGNAGKYVVLANTYAACEMWDSVASTHETM 367

Query: 430 KEKGLKKDVGCSWIEVTG 447
           K  G++KD   S +E+ G
Sbjct: 368 KSLGIRKDPAWSAVELQG 385


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  234 bits (596), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 225/399 (56%), Gaps = 16/399 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +NV+IS +  +G   YA   F  +         +   + L+ +++  D   G+Q+
Sbjct: 274 QDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQI 333

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A    +   S + VG++L+D+YAK     +AE++F  +  +++V   A++S Y +   +
Sbjct: 334 HAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFY 393

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GL+L   M    +  D  T ++LLRA A +++   G+Q+H+++I+      ++VF  S
Sbjct: 394 EEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIK--SGFMSNVFSGS 451

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+++Y KCG +  A+Q F     R       ++V W +M+  Y +NG  +  +K ++ M
Sbjct: 452 ALLDVYAKCGSIKDAVQTFQEMPDR-------NIVSWNAMISAYAQNGEAEATLKSFKEM 504

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           +++G +PD V+F+ V+SACSH+G V+ G+ +F  M   YKL+P  EHY+ +VD+LCR+G 
Sbjct: 505 VLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGR 564

Query: 349 LDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIY 406
            ++A KL+ EM +D         MW ++L+AC      EL + AA +   ++   +   Y
Sbjct: 565 FNEAEKLMAEMPIDPDE-----IMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPY 619

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           V +SN+YA    W+ + ++ + M+++G+KK    SW+E+
Sbjct: 620 VNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEI 658



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 163/340 (47%), Gaps = 35/340 (10%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N ++  +C++     A + F  M      +D++   + L A+  + D   G+Q+ + V K
Sbjct: 183 NTLVDSYCKSNRLDLACQLFKEMPE----IDSFTFAAVLCANIGLDDIVLGQQIHSFVIK 238

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG---- 170
           + ++ +VFV +AL+D Y+K   + DA  +FDE+P ++ V  N ++SGY     W G    
Sbjct: 239 TNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYA----WDGKHKY 294

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
             +L R +     D   F  + +L   +     E GRQ+HA  I    +  +++ + +SL
Sbjct: 295 AFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTAD--SEILVGNSL 352

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           ++MY KCG   +A  +F    HR         V WT+M+  Y + G+++E ++L+  M  
Sbjct: 353 VDMYAKCGKFEEAEMIFTNLTHR-------SAVPWTAMISAYVQKGFYEEGLQLFNKMRQ 405

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRA 346
                D+  F +++ A +    + LG +     +H + ++ G        S L+D+  + 
Sbjct: 406 ASVIADQATFASLLRASASIASLSLGKQ-----LHSFIIKSGFMSNVFSGSALLDVYAKC 460

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           G +  A +   EM DR     ++  W A++SA    G+ E
Sbjct: 461 GSIKDAVQTFQEMPDR-----NIVSWNAMISAYAQNGEAE 495



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 138/318 (43%), Gaps = 43/318 (13%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R+ +P+  +IS + + G     L+ F+ M    +  D     S L AS S+     G
Sbjct: 372 LTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLG 431

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ + + KSG++S+VF GSAL+D+YAK   I DA   F E+P +N V  NA++S Y + 
Sbjct: 432 KQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQN 491

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L+  + M   GL  D  +   +L AC+                           
Sbjct: 492 GEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS--------------------------- 524

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
                       GLV + L  FN      + +  ++   + S++ +  R+G F E  KL 
Sbjct: 525 ----------HSGLVEEGLWHFNSMTQIYKLDPRRE--HYASVVDMLCRSGRFNEAEKLM 572

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M ++   PDE+ + +V++AC      +L     + + +  +L      Y  + ++   
Sbjct: 573 AEMPID---PDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAP-YVNMSNIYAA 628

Query: 346 AGELDKAWKLINEMLDRG 363
           AG+ +   K+   M DRG
Sbjct: 629 AGQWENVSKVHKAMRDRG 646



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 30/141 (21%)

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           +I  Y K G + +A ++F       +G + +  V WT ++G Y +   FKE  +L+  M 
Sbjct: 84  MISGYVKSGNLGEARKLF-------DGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 136

Query: 290 MNGTKPDEVAFVTVISACS-----------HTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
             GT+PD V FVT++S C+            T  +KLG        +D +L  G    + 
Sbjct: 137 RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLG--------YDSRLIVG----NT 184

Query: 339 LVDLLCRAGELDKAWKLINEM 359
           LVD  C++  LD A +L  EM
Sbjct: 185 LVDSYCKSNRLDLACQLFKEM 205



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 74/400 (18%), Positives = 138/400 (34%), Gaps = 118/400 (29%)

Query: 91  SSLTASTSVKDARFG----KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           +SLT+  S++  +        + A + K+G+       +  +  + K   +  A  +F++
Sbjct: 13  TSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEK 72

Query: 147 IPVKNSVCANALLSGYCEA-------KLWAG------------------------GLELV 175
           +P KN+V  N ++SGY ++       KL+ G                          EL 
Sbjct: 73  MPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELF 132

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR-------------------- 215
             M   G + D+ T   LL  C G        QV   +I+                    
Sbjct: 133 VQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKS 192

Query: 216 ------------------------KCCNLGND--------------------VFMQSSLI 231
                                    C N+G D                    VF+ ++L+
Sbjct: 193 NRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALL 252

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           + Y K   V  A ++F+           +D V +  ++  Y  +G  K    L+  +   
Sbjct: 253 DFYSKHDSVIDARKLFDEMPE-------QDGVSYNVIISGYAWDGKHKYAFDLFRELQFT 305

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV---HDYKLEPGPEHYSCLVDLLCRAGE 348
                +  F T++S  S+T   ++G +     +    D ++  G    + LVD+  + G+
Sbjct: 306 AFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVG----NSLVDMYAKCGK 361

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
            ++A  +   +  R     S   W A++SA    G +E G
Sbjct: 362 FEEAEMIFTNLTHR-----SAVPWTAMISAYVQKGFYEEG 396


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  234 bits (596), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 141/397 (35%), Positives = 213/397 (53%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I     +     AL     M   G   DT+ L + L       D + G  V
Sbjct: 133 RDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVV 192

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +  K+G+ + VFVGS+LID+YA    +  +  +FD     ++V  N++L+GY +    
Sbjct: 193 HGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSV 252

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L + R M   G+     T S+L+ A   LS    G+Q+HAY+IR      +++F+ S
Sbjct: 253 EEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIR--ARFNDNIFISS 310

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG V  A +VFN       G  + D+V WT+M+  Y  +G   E   L+E M
Sbjct: 311 SLIDMYCKCGNVDIARRVFN-------GIQSPDIVSWTAMIMGYALHGPTTEAFVLFERM 363

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            +   KP+ + F+ V++ACSH G V  G +YF  M + Y   P  EH + L D L RAG+
Sbjct: 364 ELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGD 423

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD+A+  I+EM  +     + S+W  LL AC       L +  A+K  EL+P ++G +V+
Sbjct: 424 LDEAYNFISEMKIK----PTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVI 479

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+Y+    W+E  QLR+ M+ KG+KK+  CSWIEV
Sbjct: 480 LSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEV 516



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 145/332 (43%), Gaps = 46/332 (13%)

Query: 76  FMHVHGIFLDTYA-----------LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG 124
           F+H   +FL   A           L ++L +   +        + A   +SG  +  F  
Sbjct: 28  FLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTA 87

Query: 125 SALIDLYAKLLLIHDA--------------------ELMFDEIPVKNSVCANALLSGYCE 164
           +AL++L  KL   H                        +FDE+  +++V  N L+ G  E
Sbjct: 88  NALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAE 147

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            K     L +VR M   G   D FTLS +L   A  +  + G  VH Y I+      NDV
Sbjct: 148 HKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKN--GFDNDV 205

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ SSLI+MY  C  +  +++VF+          + D VLW SML  Y +NG  +E + +
Sbjct: 206 FVGSSLIDMYANCTQMDYSMKVFDSFS-------DCDAVLWNSMLAGYAQNGSVEEALGI 258

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  ML  G +P  V F ++I A  +   ++LG +   +++   +        S L+D+ C
Sbjct: 259 FRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIR-ARFNDNIFISSSLIDMYC 317

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           + G +D A ++ N     G  S  +  W A++
Sbjct: 318 KCGNVDIARRVFN-----GIQSPDIVSWTAMI 344


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  234 bits (596), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 129/408 (31%), Positives = 219/408 (53%), Gaps = 13/408 (3%)

Query: 38  TLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAST 97
           ++    + +  ++ + +N +I+   RNG     L+    M    +  D++ L S L    
Sbjct: 191 SVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA 250

Query: 98  SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANA 157
              D   GK++     + G  + ++V S+LID+YAK   + D+  +F  +  ++ +  N+
Sbjct: 251 ENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNS 310

Query: 158 LLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           +++G  +  L+  GL   R M    +    ++ S+++ ACA L+    G+Q+H Y+ R  
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN- 369

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
                ++F+ SSL++MY KCG +  A Q+F+    RL     +D+V WT+M+     +G 
Sbjct: 370 -GFDENIFIASSLVDMYAKCGNIRTAKQIFDRM--RL-----RDMVSWTAMIMGCALHGQ 421

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
             + I+L+E M   G KP+ VAF+ V++ACSH G V    +YF  M  D+ + PG EHY+
Sbjct: 422 APDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYA 481

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397
            + DLL RAG L++A+  I  M    H   + S+W  LLSAC      ++ +  A + LE
Sbjct: 482 AVSDLLGRAGRLEEAYDFICGM----HIGPTGSIWATLLSACRVHXNIDMAEKVANRILE 537

Query: 398 LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +DP+N G Y++L+N+Y+    W E  + R  M+  G++K   CSWIEV
Sbjct: 538 VDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEV 585



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 162/364 (44%), Gaps = 55/364 (15%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           L +  VI  +  +G P  +L +F  M   G++ D     S L +   + D   G+ +  +
Sbjct: 72  LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGY 131

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHD-------AELMFDE------------------ 146
           + + G    ++ G+AL+++Y+KL  + +       A  +FDE                  
Sbjct: 132 IIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDS 191

Query: 147 -------IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
                  +P K+ V  N +++G     L+   L ++R M    L  D FTLS++L   A 
Sbjct: 192 VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE 251

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
                 G+++H   IR+   L  D+++ SSLI+MY KC  V  + +VF L   R      
Sbjct: 252 NVDISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAKCTRVADSCRVFTLLTER------ 303

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
            D + W S++    +NG F E ++ +  MLM   KP   +F +++ AC+H   + LG + 
Sbjct: 304 -DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ- 361

Query: 320 FEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
               +H Y    G +      S LVD+  + G +  A ++ + M  R   S     W A+
Sbjct: 362 ----LHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-----WTAM 412

Query: 376 LSAC 379
           +  C
Sbjct: 413 IMGC 416


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  234 bits (596), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 140/421 (33%), Positives = 223/421 (52%), Gaps = 16/421 (3%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  C   K+   +  CL     R+ + +N +I     +G    A   F  M    +  D 
Sbjct: 291 YIKCGAVKDAREVFECLP---NRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDR 347

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
               + L+A         GK++ A   K G +S V  G+ALI++Y+K   + DA  +FD 
Sbjct: 348 VTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDR 407

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +P ++ V   AL+ GY +           + M   G++ +  T   +L+AC+   A ++G
Sbjct: 408 MPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWG 467

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           +++HA +++    +  D+ + ++L+ MY KCG V  A++V        EG   +DVV W 
Sbjct: 468 KEIHAEVVK--AGIFADLAVANALMSMYFKCGSVEDAIRVS-------EGMSTRDVVTWN 518

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +++G   +NG   E ++ +E M     +P+   FV V+SAC     V+ G   F  M  D
Sbjct: 519 TLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKD 578

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           Y + P  +HY+C+VD+L RAG L +A  +I  M  +     S +MWGALL+AC   G  E
Sbjct: 579 YGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFK----PSAAMWGALLAACRAHGNVE 634

Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +G+ AA++ L+L+P N G YV LS +YA   MW ++ +LR+LMKE+G+KK+ G SWIEV 
Sbjct: 635 IGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVA 694

Query: 447 G 447
           G
Sbjct: 695 G 695



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 184/405 (45%), Gaps = 46/405 (11%)

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
             ++H  G  +D+Y     L +    KD   GKQV  H+ + G   +V++ + L+ LY  
Sbjct: 32  LQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVH 91

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +++A  +FD+   K+ V  N ++SGY    L      L  LM   GL+ D FT  ++
Sbjct: 92  CGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSI 151

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L AC+  +A  +GR+VH  ++     L N+  + ++LI MY KCG V  A +VF+    R
Sbjct: 152 LSACSSPAALNWGREVHVRVME--AGLANNATVGNALISMYAKCGSVRDARRVFDAMASR 209

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC------ 307
                  D V WT++ G Y  +GY +E +K Y AML  G +P  + ++ V+SAC      
Sbjct: 210 -------DEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAAL 262

Query: 308 -------------SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL-----------L 343
                         H   V++     +  +    ++   E + CL +            L
Sbjct: 263 EKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGL 322

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD-PHN 402
             +G+L++A  + + ML        V+ + A+LSAC   G    GK    +A++     +
Sbjct: 323 VDSGQLEEAHGMFHRMLKECVAPDRVT-YLAILSACARPGGLACGKEIHARAVKDGLVSD 381

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           V     L N+Y+K     +  Q+ + M     K+DV  SW  + G
Sbjct: 382 VRFGNALINMYSKAGSMKDARQVFDRMP----KRDV-VSWTALVG 421



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 178/384 (46%), Gaps = 20/384 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VH H    G+     II  + L+  Y  C        L +  KF N ++ + +NV+IS 
Sbjct: 65  QVHEHILRFGMKPNVYII--NTLLKLYVHCGSVNEARRLFD--KFSN-KSVVSWNVMISG 119

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           +   G    A   F+ M   G+  D +   S L+A +S     +G++V   V ++G  ++
Sbjct: 120 YAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANN 179

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
             VG+ALI +YAK   + DA  +FD +  ++ V    L   Y E+      L+    M  
Sbjct: 180 ATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ 239

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+     T   +L AC  L+A E G+Q+HA ++       +DV + ++L +MY KCG V
Sbjct: 240 EGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVES--EHHSDVRVSTALTKMYIKCGAV 297

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A +VF       E   N+DV+ W +M+G    +G  +E   ++  ML     PD V +
Sbjct: 298 KDAREVF-------ECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTY 350

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + ++SAC+  G +  G E     V D  L       + L+++  +AG +  A ++ + M 
Sbjct: 351 LAILSACARPGGLACGKEIHARAVKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP 409

Query: 361 DRGHGSSSVSMWGALLSACHDCGK 384
            R      V  W AL+    DCG+
Sbjct: 410 KR-----DVVSWTALVGGYADCGQ 428



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 49/283 (17%)

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           W    ++++ +   G   D +    LL++C        G+QVH +++R    +  +V++ 
Sbjct: 25  WYAPADVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILR--FGMKPNVYII 82

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L+++Y  CG V +A ++F+          NK VV W  M+  Y   G  +E   L+  
Sbjct: 83  NTLLKLYVHCGSVNEARRLFDKFS-------NKSVVSWNVMISGYAHRGLGQEAFNLFTL 135

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLL 343
           M   G +PD+  FV+++SACS    +  G E     VH   +E G  + +     L+ + 
Sbjct: 136 MQQEGLEPDKFTFVSILSACSSPAALNWGRE-----VHVRVMEAGLANNATVGNALISMY 190

Query: 344 CRAGELDKAWKLINEMLDR---------------GHGSSSVSMWGAL------------- 375
            + G +  A ++ + M  R               G+   S+  + A+             
Sbjct: 191 AKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYM 250

Query: 376 --LSACHDCGKFELGKLAAQKALELDPH-NVGIYVMLSNLYAK 415
             LSAC      E GK    + +E + H +V +   L+ +Y K
Sbjct: 251 NVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIK 293


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  234 bits (596), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 216/397 (54%), Gaps = 11/397 (2%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +   GS   AL+ F  M    +  D   + + L+A    +    G+QV
Sbjct: 161 KDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQV 220

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +   G+ S++ + +ALIDLY+K   +  A  +F+ +  K+ V  N L+ GY    L+
Sbjct: 221 HSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLY 280

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M   G   +  T+ ++L ACA L A + GR +H Y+ +K  ++ N   +++
Sbjct: 281 KEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRT 340

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A QVFN   H       K +  W +M+  +  +G       L+  M
Sbjct: 341 SLIDMYAKCGDIEAAHQVFNSMLH-------KSLSSWNAMIFGFAMHGRANAGFDLFSRM 393

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             NG +PD++ FV ++SACSH+G++ LG   F+ M  DY + P  EHY C++DLL  +G 
Sbjct: 394 RKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGL 453

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +A ++I  M     G     +W +LL AC   G  EL +  A+  ++++P N G YV+
Sbjct: 454 FKEAKEMIKTMPMEPDG----VIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVL 509

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    WDE+ ++R L+  KG+KK  GCS IE+
Sbjct: 510 LSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEI 546



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 212/466 (45%), Gaps = 95/466 (20%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N L +N ++  +  +  P+ ALK +  M   G+  ++Y     L +    K    G+Q+ 
Sbjct: 30  NQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIH 89

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDA----------------------------- 140
            HV K G+   ++V ++LI +YA+   + DA                             
Sbjct: 90  GHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIR 149

Query: 141 --ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
             + MFDEIPVK+ V  NA++SGY E   +   LEL + M    +  D  T+  +L ACA
Sbjct: 150 SAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACA 209

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
              + E GRQVH+++       G+++ + ++LI++Y KCG V  A  +F       EG  
Sbjct: 210 QSRSVELGRQVHSWIDDH--GFGSNLKIVNALIDLYSKCGQVETACGLF-------EGLS 260

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            KDVV W +++G Y     +KE + L++ ML +G  P++V  V+++ AC+H G + +G  
Sbjct: 261 CKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIG-- 318

Query: 319 YFEWMVH---DYKLEP---GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
              W +H   D KL+     P   + L+D+  + G+++ A ++ N ML +   S +  ++
Sbjct: 319 --RW-IHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIF 375

Query: 373 G------------------------------ALLSACHDCGKFELGKLAAQKALELDPHN 402
           G                               LLSAC   GK +LG+    K++  D   
Sbjct: 376 GFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGR-HIFKSMTQD--- 431

Query: 403 VGIYVMLSNLYAKFCMWDEIG------QLRELMKEKGLKKDVGCSW 442
              Y +   L    CM D +G      + +E++K   ++ D G  W
Sbjct: 432 ---YDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPD-GVIW 473



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 149/331 (45%), Gaps = 62/331 (18%)

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F  I   N +  N +L GY  +      L+L  +M +LGL  + +T   LL++CA   A
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR--------- 253
            E G+Q+H ++++       D+++ +SLI MY + G +  A +VF+ + HR         
Sbjct: 82  FEEGQQIHGHVLK--LGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALI 139

Query: 254 ----LEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
                 G I            KDVV W +M+  Y   G +KE ++L++ M+    +PDE 
Sbjct: 140 TGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEG 199

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA------ 352
             VTV+SAC+ +  V+LG +   W + D+      +  + L+DL  + G+++ A      
Sbjct: 200 TMVTVLSACAQSRSVELGRQVHSW-IDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEG 258

Query: 353 --------WK-----------------LINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
                   W                  L  EML  G   + V++  ++L AC   G  ++
Sbjct: 259 LSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIV-SILPACAHLGAIDI 317

Query: 388 GK---LAAQKALELDPHNVGIYVMLSNLYAK 415
           G+   +   K L+   +   +   L ++YAK
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSLRTSLIDMYAK 348


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  234 bits (596), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 130/399 (32%), Positives = 227/399 (56%), Gaps = 13/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I+ + R        + F  M    +F +   + S + +   V   + GK++
Sbjct: 195 RSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRL 254

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A++ ++G+  S+ + +AL+D+Y K   I  A  +FD +  K+ +   A++S Y +A   
Sbjct: 255 HAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCI 314

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
               +L   M   G+  +  T+ +LL  CA   A + G+  HAY+ ++   +  DV +++
Sbjct: 315 DYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEV--DVILKT 372

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG ++ A ++F+ A       I++D+  W  M+  YG +GY ++ +KL+  M
Sbjct: 373 ALIDMYAKCGDISGAQRLFSEA-------IDRDICTWNVMMAGYGMHGYGEKALKLFTEM 425

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G KP+++ F+  + ACSH G V  G   FE M+HD+ L P  EHY C+VDLL RAG 
Sbjct: 426 ETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGL 485

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD+A+K+I  M      + ++++WGA+L+AC       +G+LAA++ L L+P N G  V+
Sbjct: 486 LDEAYKMIESM----PVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVL 541

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +SN+YA    W+++  +R+ +K+ G+KK+ G S IEV G
Sbjct: 542 MSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNG 580



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 177/361 (49%), Gaps = 39/361 (10%)

Query: 67  PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSA 126
           P YAL T+++M    I +D++ + S L A + +  AR GK++     K+G +S VFV +A
Sbjct: 90  PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNA 149

Query: 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCAN----------------------ALLSGYCE 164
           L+ +Y++   +  A L+FD++  ++ V  +                      A+++GY  
Sbjct: 150 LMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIR 209

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                 G  L   M    +  +  T+ +L+ +C  + A + G+++HAY++R     G  +
Sbjct: 210 CNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRN--GFGMSL 267

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + ++L++MYGKCG +  A  +F       +   NKDV+ WT+M+  Y +        +L
Sbjct: 268 ALATALVDMYGKCGEIRSARAIF-------DSMKNKDVMTWTAMISAYAQANCIDYAFQL 320

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M  NG +P+E+  V+++S C+  G + +G ++F   +    +E      + L+D+  
Sbjct: 321 FVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTALIDMYA 379

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHN 402
           + G++  A +L +E +DR      +  W  +++    H  G+  L      + L + P++
Sbjct: 380 KCGDISGAQRLFSEAIDR-----DICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPND 434

Query: 403 V 403
           +
Sbjct: 435 I 435


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 240/451 (53%), Gaps = 28/451 (6%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVV 57
            +H++  + GL        +S L +           G L +C K  +    R+ + +N +
Sbjct: 268 TIHSYSIKHGL--------ESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSI 319

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I  +  N  PL A+  F  M +  I  D   L S  +  + + D R  + VQ    + GW
Sbjct: 320 IKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGW 379

Query: 118 -LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
            L  + +G+A++ +YAKL L+  A  +F+ +P  + +  N ++SGY +    +  +E+  
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYN 439

Query: 177 LMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           +M   G +  +  T  ++L AC+   A   G ++H  +++    L  DVF+ +SL +MYG
Sbjct: 440 IMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL--DVFVVTSLADMYG 497

Query: 236 KCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
           KCG +  AL +F         +I + + V W +++  +G +G+ ++ + L++ ML  G K
Sbjct: 498 KCGRLEDALSLFY--------QIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVK 549

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           PD + FVT++SACSH+G V  G   FE M  DY + P  +HY C+VD+  RAG+L+ A K
Sbjct: 550 PDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALK 609

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
            I  M          S+WGALLSAC   G  +LGK+A++   E++P +VG +V+LSN+YA
Sbjct: 610 FIKSM----SLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYA 665

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
               W+ + ++R +   KGL+K  G S +EV
Sbjct: 666 SAGKWEGVDEIRSIAHGKGLRKTPGWSSMEV 696



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 188/417 (45%), Gaps = 55/417 (13%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSSL 93
           N+    +    +  R+   +N++IS + R G+    ++ FS FM   G+  D     S L
Sbjct: 101 NVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVL 160

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A  +V D   G ++     K G++  V+V ++LI LY++   + +A ++FDE+PV++  
Sbjct: 161 KACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             NA++SGYC++      L L   + A+    D  T+ +LL AC        G  +H+Y 
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYS 273

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           I+    L +++F+ + LI++Y + G +    +VF+    R       D++ W S++  Y 
Sbjct: 274 IKH--GLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR-------DLISWNSIIKAYE 324

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL--GIEYFE----WMVHD- 326
            N      I L++ M ++  +PD +  +++ S  S  G ++    ++ F     W + D 
Sbjct: 325 LNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDI 384

Query: 327 ----------------------YKLEPGPE--HYSCLVDLLCRAGELDKAWKLINEMLDR 362
                                 +   P  +   ++ ++    + G   +A ++ N M + 
Sbjct: 385 TIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEE 444

Query: 363 GHGSSSVSMWGALLSACHDCGKFELG-KLAAQ---KALELDPHNVGIYVMLSNLYAK 415
           G  +++   W ++L AC   G    G KL  +     L LD   V +   L+++Y K
Sbjct: 445 GEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLD---VFVVTSLADMYGK 498



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 120/267 (44%), Gaps = 34/267 (12%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            K + A +  S  + +V + + L++LY  L  +  A   FD I  ++    N ++SGY  
Sbjct: 70  AKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGR 129

Query: 165 AKLWAGGLELVR----LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           A       E++R     M + GL  D+ T  ++L+AC  +     G ++H   ++     
Sbjct: 130 A---GNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALK--FGF 181

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             DV++ +SLI +Y +   V  A  +F+    R       D+  W +M+  Y ++G  KE
Sbjct: 182 MWDVYVAASLIHLYSRYKAVGNARILFDEMPVR-------DMGSWNAMISGYCQSGNAKE 234

Query: 281 VIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---- 335
            +      L NG +  D V  V+++SAC+  G    G+      +H Y ++ G E     
Sbjct: 235 ALT-----LSNGLRAMDSVTVVSLLSACTEAGDFNRGV-----TIHSYSIKHGLESELFV 284

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDR 362
            + L+DL    G L    K+ + M  R
Sbjct: 285 SNKLIDLYAEFGRLRDCQKVFDRMYVR 311


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 145/425 (34%), Positives = 224/425 (52%), Gaps = 28/425 (6%)

Query: 24  MLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF 83
           M  Y++C    NL  +      L  ++ + +N++I ++ +      A+  F  M   GI 
Sbjct: 326 MTMYSSC---GNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIE 382

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
            D + + S L +S S++     K  QA V+K+G  S + V +AL+  ++K   I  A  +
Sbjct: 383 PDEFTIGSLLASSESLE---IVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQV 439

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           F+ +   N +  N ++SG+        GLE    +    L  + +TLS +L  CA +SA 
Sbjct: 440 FNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISAL 499

Query: 204 EFGRQVHAYMIRK----CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
             G+Q+H Y++R       +LGN      +LI MY KCG +  +L++FN+   R      
Sbjct: 500 RHGKQIHGYILRSGVFSVTSLGN------ALITMYAKCGDLDWSLRIFNVMNGR------ 547

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            D+V W +M+  Y ++G  KE +  ++AM    G KPD+  F  V+SACSH G V  G  
Sbjct: 548 -DIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDGTR 606

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            F  MV+DY  EPG +H SC+VDLL RAG L++A +LIN      H     S+W  L SA
Sbjct: 607 IFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEAERLINS----KHLKIVSSIWWTLFSA 662

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           C   G   LG++ A   LE++ ++  +YV+LSN+YA    W+E    R+LM++  + K  
Sbjct: 663 CAAHGNLRLGRIVAGFLLEIEQNDPAVYVLLSNIYAAAGQWEEAANTRDLMQKTRVAKQP 722

Query: 439 GCSWI 443
           GCSWI
Sbjct: 723 GCSWI 727



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 149/337 (44%), Gaps = 33/337 (9%)

Query: 48  PRN-PLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PR  P+ +N +I+    N     AL  F  MH  G+  D Y   S L+   S++   FG+
Sbjct: 146 PRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSL-CSLELLDFGR 204

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI--PVKNSVCANALLSGYCE 164
           +V   V K+G+L    V +AL+ +Y     + DA  +F+E    V + +  N ++ G   
Sbjct: 205 EVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLAS 264

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR----KCCNL 220
                  L + + M    L     T  +++ +C   S+A    QVHA  I+     C  +
Sbjct: 265 VGRDEEALIMFKEMQEACLRPTELTFVSVMSSC---SSARVSHQVHAQAIKMGFEACTPV 321

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            N      + + MY  CG +     VF+    RLE    KD++ W  ++  Y +  +++ 
Sbjct: 322 SN------AAMTMYSSCGNLHAVHMVFD----RLE---EKDLISWNIIIMNYAQGNFYRL 368

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            I  +  M   G +PDE    +++++      VK+    F+ +V    L    E  + LV
Sbjct: 369 AILAFLQMQRAGIEPDEFTIGSLLASSESLEIVKM----FQALVSKNGLNSKIEVSNALV 424

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
               + G++++A+++ N M      S ++  W  ++S
Sbjct: 425 SAFSKHGQIEQAYQVFNNM-----SSPNLISWNTIIS 456



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 139/307 (45%), Gaps = 48/307 (15%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCSSLTASTSVKDARFGKQVQA 110
           +  N ++++  R+     +++ F  +H       D + L S+LTA  +++ A  G Q+ A
Sbjct: 18  IKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLHA 77

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI----------------------- 147
           +  ++G  +   VG+ L+  YAK   +   + +F+EI                       
Sbjct: 78  YSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIGY 137

Query: 148 --------PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
                   P    V  NA+++G  E K     L L R M  LG+ +D +T +++L  C+ 
Sbjct: 138 ACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCS- 196

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L   +FGR+VH  +I+    +   V   ++L+ MY   G V  A +VF  A    E  ++
Sbjct: 197 LELLDFGREVHTLVIKTGFLVRASVI--NALLTMYFNSGKVADAYEVFEEA----ESTVH 250

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS--------HTG 311
            D+  +  M+G     G  +E + +++ M     +P E+ FV+V+S+CS        H  
Sbjct: 251 DDIT-FNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCSSARVSHQVHAQ 309

Query: 312 QVKLGIE 318
            +K+G E
Sbjct: 310 AIKMGFE 316



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 18/171 (10%)

Query: 156 NALLSGYCEAKLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
           N LL+    +   +  ++L V++  +  L  DHFTLS+ L ACA L  A  G Q+HAY I
Sbjct: 21  NQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLHAYSI 80

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYG 273
           +    L     + ++L+  Y K   +    +VFN        EI N DV  WT++L    
Sbjct: 81  Q--TGLKAYTHVGNTLLSFYAKSKDLVSVQRVFN--------EIENPDVYSWTTLLSACT 130

Query: 274 RNGYFKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
           + G        Y   L N T +   V +  +I+ C+     ++ +  F  M
Sbjct: 131 KLGQIG-----YACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREM 176


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 148/414 (35%), Positives = 225/414 (54%), Gaps = 20/414 (4%)

Query: 37  GTLTNCLKFLN--PR-NPLPFNVVISDFCRN-GSPLYALKTFSFMHVHGIFLDTYALCSS 92
           G  T CLK  +  P  + + +N VI     +  S   A+K F  M   G  L      + 
Sbjct: 537 GCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINI 596

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKN 151
           L+A +S+       Q+ A V K        +G+AL+  Y K   +++ E +F  +   ++
Sbjct: 597 LSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRD 656

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N+++SGY   +L    ++LV  M   G   D FT + +L ACA ++  E G +VHA
Sbjct: 657 EVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHA 716

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
             IR C  L +DV + S+L++MY KCG +  A + F L   R       +V  W SM+  
Sbjct: 717 CGIRAC--LESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-------NVYSWNSMISG 767

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           Y R+G+ ++ +KL+  M+++G  PD V FV V+SACSH G V+ G E+F+ M   Y+L P
Sbjct: 768 YARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSP 827

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGK 389
             EH+SC+VDLL RAG+LD+    IN M  +     +V +W  +L AC   +    ELG+
Sbjct: 828 RVEHFSCMVDLLGRAGKLDEVGDFINSMPMK----PNVLIWRTVLGACCRANGRNTELGR 883

Query: 390 LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
            AA+  LEL+P N   YV+L+N+YA    W+++ + R  MKE  +KK+ GCSW+
Sbjct: 884 RAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWV 937



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 25/281 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL----DTYALCSSLTASTSVKDARF 104
           RN + +N +IS + R G  + A   FS M   G+      + Y   S +T + S  D  F
Sbjct: 239 RNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVD--F 296

Query: 105 G----KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           G    +Q+ A V KSG+L  ++V SAL+  +A+  L  DA+ +F+++ V+N V  N L+ 
Sbjct: 297 GLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMV 356

Query: 161 GYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAE----FGRQVHAYMIR 215
           G  + K      ++   M  L G++ D + +  LL A +  S  E     GR+VHA++IR
Sbjct: 357 GLVKQKQGEAAAKVFHEMKDLVGINSDSYVV--LLSAFSEFSVLEEGRRKGREVHAHVIR 414

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
              N  N V + + L+ MY K G +  A  VF L        + KD V W S++    +N
Sbjct: 415 TGLN-DNKVAIGNGLVNMYAKSGAIADACSVFELM-------VEKDSVSWNSLISGLDQN 466

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              ++  + +  M   G+ P     ++ +S+C+  G + LG
Sbjct: 467 ECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLG 507



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 14/273 (5%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH-VHGIFLDTYALCSSLTASTSV 99
           N  + +  RN +  N ++    +      A K F  M  + GI  D+Y +  S  +  SV
Sbjct: 338 NIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSV 397

Query: 100 --KDARFGKQVQAHVTKSGWLSS-VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
             +  R G++V AHV ++G   + V +G+ L+++YAK   I DA  +F+ +  K+SV  N
Sbjct: 398 LEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWN 457

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           +L+SG  + +      E    M   G    +FTL + L +CA L     G Q+H   ++ 
Sbjct: 458 SLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLK- 516

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN- 275
              L  DV + ++L+ +Y + G  T+ L+VF+L           D V W S++G    + 
Sbjct: 517 -LGLDTDVSVSNALLALYAETGCFTECLKVFSLMPE-------YDQVSWNSVIGALSDSE 568

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               + +K +  M+  G     V F+ ++SA S
Sbjct: 569 ASVSQAVKYFLQMMRGGWGLSRVTFINILSAVS 601



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 150/331 (45%), Gaps = 34/331 (10%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            +++     K G++ ++F+ + LI++Y ++  +  A+ +FDE+  +N V    L+SGY +
Sbjct: 90  ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 149

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRAC--AGLSAAEFGRQVHAYMIRKCCNLGN 222
                      R M   G   +H+   + LRAC  +G S  + G Q+H  + +     G+
Sbjct: 150 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISK--TRYGS 207

Query: 223 DVFMQSSLIEMYGKC-GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           DV + + LI MYG C      A  VF+  G R       + + W S++ VY R G     
Sbjct: 208 DVVVCNVLISMYGSCLDSANDARSVFDGIGIR-------NSISWNSIISVYSRRGDAVSA 260

Query: 282 IKLYEAMLMNGT----KPDEVAFVTVI-SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
             L+ +M   G     KP+E  F ++I +ACS    V  G+   E M+   +     +  
Sbjct: 261 YDLFSSMQKEGLGFSFKPNEYTFGSLITTACS---SVDFGLCVLEQMLARVEKSGFLQDL 317

Query: 337 ---SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
              S LV    R G  D A  +  +M  R    + VSM G ++       K + G+ AA+
Sbjct: 318 YVSSALVSGFARFGLTDDAKNIFEQMGVR----NVVSMNGLMVGLV----KQKQGEAAAK 369

Query: 394 KALELDP---HNVGIYVMLSNLYAKFCMWDE 421
              E+      N   YV+L + +++F + +E
Sbjct: 370 VFHEMKDLVGINSDSYVVLLSAFSEFSVLEE 400



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 13/229 (5%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +LG+       ++ RN + +  +IS + +NG P  A   F  M   G   + YA  S+L 
Sbjct: 121 DLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALR 180

Query: 95  A--STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL-LIHDAELMFDEIPVKN 151
           A   +     + G Q+   ++K+ + S V V + LI +Y   L   +DA  +FD I ++N
Sbjct: 181 ACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRN 240

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDY----DHFTLSALL-RACAGLSAAEFG 206
           S+  N+++S Y          +L   M   GL +    + +T  +L+  AC   S+ +FG
Sbjct: 241 SISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTAC---SSVDFG 297

Query: 207 RQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
             V   M+ +    G   D+++ S+L+  + + GL   A  +F   G R
Sbjct: 298 LCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVR 346


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/447 (30%), Positives = 236/447 (52%), Gaps = 50/447 (11%)

Query: 35  NLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
            LG + N  K  +    ++ + +N ++  + + G    A+  +       +  + ++   
Sbjct: 141 KLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAG 200

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE----- 146
            L     +K+ +  KQV   V  +G+LS++ + S+++D Y+K   +  A  +FDE     
Sbjct: 201 VLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKD 260

Query: 147 --------------------------IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
                                     +P KN V  +AL+SGY    L    L+    M  
Sbjct: 261 IHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMK 320

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC--CNLGNDVFMQSSLIEMYGKCG 238
            G++ + +T S+ L ACA ++A + G+QVH Y+IR    CN      + SSLI+MY KCG
Sbjct: 321 FGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCN----TIVVSSLIDMYSKCG 376

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
           ++  +  VF+L G++      +DVV+W +M+    +NG+ ++ ++++  M+ +G KPD +
Sbjct: 377 MLEASCCVFHLMGNK------QDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRI 430

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            F+ ++SACSH+G V+ G+ +F+ M +D+ + P  EHY+CL+DLL RAG      +L+NE
Sbjct: 431 TFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCF---VELVNE 487

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
            L+         +W ALL  C      ELG+  A++ +EL P +   YV L++LYA    
Sbjct: 488 -LENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGK 546

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEV 445
           W+ + ++RELM EK ++K+ G SWI+V
Sbjct: 547 WESVEKVRELMDEKFIRKERGISWIDV 573



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 135/306 (44%), Gaps = 33/306 (10%)

Query: 131 YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
           YAKL  +++A  +FD +  K+ V  N ++  Y +   +   + L R    L + ++ F+ 
Sbjct: 139 YAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSF 198

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-- 248
           + +L  C  L   +  +QVH  ++       +++ + SS+++ Y KCG +  A  +F+  
Sbjct: 199 AGVLILCVKLKELQLAKQVHGQVL--VAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEM 256

Query: 249 -----------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYE 286
                      ++G+   G++N           K+ V W++++  Y RN    E +  + 
Sbjct: 257 LVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFT 316

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M+  G  P++  F + + AC+    +K G +   +++  Y         S L+D+  + 
Sbjct: 317 KMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTY-FRCNTIVVSSLIDMYSKC 375

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVG 404
           G L+ +  + + M ++      V +W  ++SA    G  E         +E  L P  + 
Sbjct: 376 GMLEASCCVFHLMGNK----QDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRIT 431

Query: 405 IYVMLS 410
             V+LS
Sbjct: 432 FIVILS 437


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/412 (33%), Positives = 221/412 (53%), Gaps = 16/412 (3%)

Query: 37  GTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTA 95
           G        +  ++ + +N ++S + + G    A++ F  +    G   D  +L S L A
Sbjct: 169 GVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGA 228

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
              + D   G+ V+  V + G   + ++GSALI +Y+K   +  +  +FD +P ++ +  
Sbjct: 229 CGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITW 288

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           NA +S Y +  +    + L   M   G+D +  TL+A+L ACA + A + G+Q+  Y   
Sbjct: 289 NAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATH 348

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
           +   L +D+F+ ++LI+MY KCG +  A +VFN           K+   W +M+     +
Sbjct: 349 R--GLQHDIFVATALIDMYAKCGSLESAQRVFN-------DMPRKNDASWNAMISALASH 399

Query: 276 GYFKEVIKLYEAMLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           G  KE + L+E M   G   +P+++ FV+++SAC H G V  G   F+ M   + L P  
Sbjct: 400 GKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKI 459

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHYSC+VDLL RAG L +AW +I +M ++     +V++ GAL SAC      ++G+   Q
Sbjct: 460 EHYSCMVDLLSRAGHLYEAWDVIEKMPEK---PDNVTL-GALHSACQRKKNVDIGERVIQ 515

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             LELDP N G Y++ S +Y    MWD+  ++R LM+E G+ K  GCSWIEV
Sbjct: 516 MLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEV 567



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 150/309 (48%), Gaps = 31/309 (10%)

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A  ++++ R  +     V K G  +     ++++ +Y +      A  +FDEI  K+ V 
Sbjct: 126 ACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVS 185

Query: 155 ANALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
            N+LLSGY +       +E+  RL    G + D  +L ++L AC  L   E GR V  ++
Sbjct: 186 WNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFV 245

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           + +   + +  ++ S+LI MY KCG +  + ++F       +G  ++D + W + +  Y 
Sbjct: 246 VERGMKVNS--YIGSALISMYSKCGELVSSRRIF-------DGMPSRDFITWNAAISAYA 296

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           +NG   E I L+ +M  NG  P++V    V+SAC+  G + LG +  E+  H      G 
Sbjct: 297 QNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHR-----GL 351

Query: 334 EH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           +H     + L+D+  + G L+ A ++ N+M  +   S     W A++SA    GK     
Sbjct: 352 QHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDAS-----WNAMISALASHGK----- 401

Query: 390 LAAQKALEL 398
             A++AL L
Sbjct: 402 --AKEALSL 408



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 21/271 (7%)

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L L   M  L +  ++FT   +  ACA L      R  H  + +    L ND    +S++
Sbjct: 102 LHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFK--LGLDNDHHTVNSMV 159

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAML- 289
            MY +CG    A +VF+        EI  KD+V W S+L  Y + G+ +E ++++  +  
Sbjct: 160 TMYFRCGENGVARKVFD--------EITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLRE 211

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
            +G +PDE++ V+V+ AC   G ++LG  + E  V +  ++      S L+ +  + GEL
Sbjct: 212 ESGFEPDEMSLVSVLGACGELGDLELG-RWVEGFVVERGMKVNSYIGSALISMYSKCGEL 270

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYV 407
             + ++ + M  R         W A +SA    G  +  +    + K   +DP+ V +  
Sbjct: 271 VSSRRIFDGMPSR-----DFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTA 325

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           +LS   A     D   Q+ E    +GL+ D+
Sbjct: 326 VLSAC-ASIGALDLGKQMDEYATHRGLQHDI 355


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/446 (32%), Positives = 240/446 (53%), Gaps = 20/446 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHA    TG+  I  +I  ++L+  Y   +HK +L T       +  R+P+ ++V+I  
Sbjct: 21  QVHAQVTTTGI--IHDLIVANKLL--YMCAKHK-DLVTAHLLFNKMEERDPVSWSVMIGG 75

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F +NG      +TF  +   G   D ++L   + A         G+ + + V K+G    
Sbjct: 76  FVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLD 135

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            FV S L+D+YAK  +I +A+ +FD +P K+ V    +++GY E         L   M  
Sbjct: 136 NFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRR 195

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G   D   +  ++ ACA L A    R VH Y+  +  +L  DV + +++I+MY KCG +
Sbjct: 196 DGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL--DVELGTAMIDMYAKCGSI 253

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             + ++F+    R+E    K+V+ W++M+G YG +G  +E ++L+  ML +G  P+ + F
Sbjct: 254 DSSREIFD----RME---QKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITF 306

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM- 359
           ++++ ACSH G V  G++ F  M   Y + P  +HY+C+VDLL RAG LD+A +LI  M 
Sbjct: 307 ISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENME 366

Query: 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419
           +++  G     +W A L AC    + +L + AA+  L L   N G Y++LSN+YA    W
Sbjct: 367 VEKDEG-----IWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRW 421

Query: 420 DEIGQLRELMKEKGLKKDVGCSWIEV 445
            ++ ++R LM ++ LKK  G +WIEV
Sbjct: 422 KDVAKIRNLMAKRRLKKIPGYTWIEV 447



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 142/277 (51%), Gaps = 23/277 (8%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQV A VT +G +  + V + L+ + AK   +  A L+F+++  ++ V  + ++ G+ + 
Sbjct: 20  KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN 79

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +    +  R +   G   D+F+L  +++AC        GR +H+ +++   +L N  F
Sbjct: 80  GDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDN--F 137

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L++MY KCG++  A Q+F+    R+     KD+V  T M+  Y   G   E   L+
Sbjct: 138 VCSTLVDMYAKCGMIDNAKQLFD----RMP---KKDLVTRTVMIAGYAECGKPNESWVLF 190

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY----KLEPGPEHYSCLVD 341
           + M  +G  PD+VA VT+++AC+     KLG      +VHDY    +     E  + ++D
Sbjct: 191 DQMRRDGFVPDKVAMVTIVNACA-----KLGAMNKARLVHDYVCARRYSLDVELGTAMID 245

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +  + G +D +     E+ DR    + +S W A++ A
Sbjct: 246 MYAKCGSIDSS----REIFDRMEQKNVIS-WSAMIGA 277


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 214/397 (53%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I     +     AL     M   G   DT+ L + L       D + G  V
Sbjct: 450 RDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVV 509

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +  K+G+ + VFVGS+LID+YA    +  +  +FD     ++V  N++L+GY +    
Sbjct: 510 HGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSV 569

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L + R M   G+     T S+L+ A   LS    G+Q+HAY+IR   N  +++F+ S
Sbjct: 570 EEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFN--DNIFISS 627

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG V  A +VFN       G  + D+V WT+M+  Y  +G   E   L+E M
Sbjct: 628 SLIDMYCKCGNVDIARRVFN-------GIQSPDIVSWTAMIMGYALHGPTTEAFVLFERM 680

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            +   KP+ + F+ V++ACSH G V  G +YF  M + Y   P  EH + L D L RAG+
Sbjct: 681 ELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGD 740

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD+A+  I+EM  +     + S+W  LL AC       L +  A+K  EL+P ++G +V+
Sbjct: 741 LDEAYNFISEMKIK----PTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVI 796

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+Y+    W+E  QLR+ M+ KG+KK+  CSWIEV
Sbjct: 797 LSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEV 833



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 145/332 (43%), Gaps = 46/332 (13%)

Query: 76  FMHVHGIFLDTYA-----------LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG 124
           F+H   +FL   A           L ++L +   +        + A   +SG  +  F  
Sbjct: 345 FLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTA 404

Query: 125 SALIDLYAKLLLIHDA--------------------ELMFDEIPVKNSVCANALLSGYCE 164
           +AL++L  KL   H                        +FDE+  +++V  N L+ G  E
Sbjct: 405 NALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAE 464

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            K     L +VR M   G   D FTLS +L   A  +  + G  VH Y I+      NDV
Sbjct: 465 HKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKN--GFDNDV 522

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ SSLI+MY  C  +  +++VF+          + D VLW SML  Y +NG  +E + +
Sbjct: 523 FVGSSLIDMYANCTQMDYSMKVFDSFS-------DCDAVLWNSMLAGYAQNGSVEEALGI 575

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  ML  G +P  V F ++I A  +   ++LG +   +++   +        S L+D+ C
Sbjct: 576 FRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIR-ARFNDNIFISSSLIDMYC 634

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           + G +D A ++ N     G  S  +  W A++
Sbjct: 635 KCGNVDIARRVFN-----GIQSPDIVSWTAMI 661


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/412 (33%), Positives = 221/412 (53%), Gaps = 16/412 (3%)

Query: 37  GTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTA 95
           G        +  ++ + +N ++S + + G    A++ F  +    G   D  +L S L A
Sbjct: 169 GVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGA 228

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
              + D   G+ V+  V + G   + ++GSALI +Y+K   +  +  +FD +P ++ +  
Sbjct: 229 CGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITW 288

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           NA +S Y +  +    + L   M   G+D +  TL+A+L ACA + A + G+Q+  Y   
Sbjct: 289 NAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATH 348

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
           +   L +D+F+ ++LI+MY KCG +  A +VFN           K+   W +M+     +
Sbjct: 349 R--GLQHDIFVATALIDMYAKCGSLESAQRVFN-------DMPRKNDASWNAMISALASH 399

Query: 276 GYFKEVIKLYEAMLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           G  KE + L+E M   G   +P+++ FV+++SAC H G V  G   F+ M   + L P  
Sbjct: 400 GKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKI 459

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHYSC+VDLL RAG L +AW +I +M ++     +V++ GAL SAC      ++G+   Q
Sbjct: 460 EHYSCMVDLLSRAGHLYEAWDVIEKMPEK---PDNVTL-GALHSACQRKKNVDIGERVIQ 515

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             LELDP N G Y++ S +Y    MWD+  ++R LM+E G+ K  GCSWIEV
Sbjct: 516 MLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEV 567



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 150/309 (48%), Gaps = 31/309 (10%)

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A  ++++ R  +     V K G  +     ++++ +Y +      A  +FDEI  K+ V 
Sbjct: 126 ACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVS 185

Query: 155 ANALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
            N+LLSGY +       +E+  RL    G + D  +L ++L AC  L   E GR V  ++
Sbjct: 186 WNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFV 245

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           + +   + +  ++ S+LI MY KCG +  + ++F       +G  ++D + W + +  Y 
Sbjct: 246 VERGMKVNS--YIGSALISMYSKCGELVSSRRIF-------DGMPSRDFITWNAAISAYA 296

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           +NG   E I L+ +M  NG  P++V    V+SAC+  G + LG +  E+  H      G 
Sbjct: 297 QNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHR-----GL 351

Query: 334 EH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           +H     + L+D+  + G L+ A ++ N+M  +   S     W A++SA    GK     
Sbjct: 352 QHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDAS-----WNAMISALASHGK----- 401

Query: 390 LAAQKALEL 398
             A++AL L
Sbjct: 402 --AKEALSL 408



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 21/271 (7%)

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L L   M  L +  ++FT   +  ACA L      R  H  + +    L ND    +S++
Sbjct: 102 LHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFK--LGLDNDHHTVNSMV 159

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAML- 289
            MY +CG    A +VF+        EI  KD+V W S+L  Y + G+ +E ++++  +  
Sbjct: 160 TMYFRCGENGVARKVFD--------EITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLRE 211

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
            +G +PDE++ V+V+ AC   G ++LG  + E  V +  ++      S L+ +  + GEL
Sbjct: 212 ESGFEPDEMSLVSVLGACGELGDLELG-RWVEGFVVERGMKVNSYIGSALISMYSKCGEL 270

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYV 407
             + ++ + M  R         W A +SA    G  +  +    + K   +DP+ V +  
Sbjct: 271 VSSRRIFDGMPSR-----DFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTA 325

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           +LS   A     D   Q+ E    +GL+ D+
Sbjct: 326 VLSAC-ASIGALDLGKQMDEYATHRGLQHDI 355


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/402 (33%), Positives = 223/402 (55%), Gaps = 13/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  +N + + ++I+ + + G    AL+    M    +  +     S L   T+      G
Sbjct: 258 LPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHG 317

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K+V  ++ +SG+   ++V +ALI +Y K   + +A  +F ++P ++ V   A+++GY + 
Sbjct: 318 KKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQL 377

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 ++L R M   G+  D  T ++ L +C+  +  + G+ +H  ++    +L  DV+
Sbjct: 378 GFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSL--DVY 435

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +QS+L+ MY KCG +  A  VFN    R       +VV WT+M+    ++G  +E ++ +
Sbjct: 436 LQSALVSMYAKCGSMDDARLVFNQMSER-------NVVAWTAMITGCAQHGRCREALEYF 488

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M   G KPD+V F +V+SAC+H G V+ G ++F  M  DY ++P  EHYSC VDLL R
Sbjct: 489 EQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGR 548

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L++A  +I  M          S+WGALLSAC      E G+ AA+  L+LDP + G 
Sbjct: 549 AGHLEEAENVILTM----PFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGA 604

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           YV LSN+YA    +++  ++R++M+++ + K+ G SWIEV G
Sbjct: 605 YVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDG 646



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 179/352 (50%), Gaps = 20/352 (5%)

Query: 37  GTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G+LT+  +  +    RN + +  +I  F      L A K +  M + G   D     S L
Sbjct: 145 GSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLL 204

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A T+ +  + G++V   + K+G      VG++L+ +YAK   I  A+++FD++P KN V
Sbjct: 205 NAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVV 264

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
               L++GY +       LEL+  M    +  +  T +++L+ C    A E G++VH Y+
Sbjct: 265 TWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYI 324

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           I+     G ++++ ++LI MY KCG + +A ++F    HR       DVV WT+M+  Y 
Sbjct: 325 IQS--GYGREIWVVNALITMYCKCGGLKEARKLFGDLPHR-------DVVTWTAMVTGYA 375

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPG 332
           + G+  E I L+  M   G KPD++ F + +++CS    ++ G    + +VH  Y L+  
Sbjct: 376 QLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVY 435

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            +  S LV +  + G +D A  + N+M +R     +V  W A+++ C   G+
Sbjct: 436 LQ--SALVSMYAKCGSMDDARLVFNQMSER-----NVVAWTAMITGCAQHGR 480



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 142/325 (43%), Gaps = 23/325 (7%)

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           +S  C+ G    AL   + M + G  + +      L     ++    G++V A + KSG 
Sbjct: 68  VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 127

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
             + ++ + L+ +YAK   + DA  +FD I  +N V   A++  +          +    
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G   D  T  +LL A       + G++VH  + +    L   V   +SL+ MY KC
Sbjct: 188 MKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRV--GTSLVGMYAKC 245

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G ++KA  +F+           K+VV WT ++  Y + G     ++L E M      P++
Sbjct: 246 GDISKAQVIFDKLP-------EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNK 298

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAW 353
           + + +++  C+      L +E+ +  VH Y ++ G        + L+ + C+ G L +A 
Sbjct: 299 ITYTSILQGCT----TPLALEHGK-KVHRYIIQSGYGREIWVVNALITMYCKCGGLKEAR 353

Query: 354 KLINEMLDRGHGSSSVSMWGALLSA 378
           KL  ++  R      V  W A+++ 
Sbjct: 354 KLFGDLPHR-----DVVTWTAMVTG 373


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 212/385 (55%), Gaps = 13/385 (3%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + RNG P  AL  +  M      L  +A   +L A + + D + G+ V A V K+     
Sbjct: 153 YSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPD 212

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
             V +AL+ LY++     +A  +FD +P +N V  N+L++G  +       +E  R+M  
Sbjct: 213 QVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQG 272

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+ +   TL+ +L  CA ++A   G+++HA +++       D  + +SL++MY KCG +
Sbjct: 273 KGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAK--PDAPVLNSLVDMYAKCGAM 330

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
               +VFN       G   KD+  W +++  Y  NG   E ++ ++ M+ +G  PD + F
Sbjct: 331 DYCRRVFN-------GMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITF 383

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + ++S CSH G    G   FE M  DY + P  EHY+CLVD+L RAG + +A +++  M 
Sbjct: 384 IALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMP 443

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +  G    S+WG+LL++C   G   L +  A++  EL+P+N G YVMLSN+YA   MW+
Sbjct: 444 FKPTG----SIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWE 499

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
            +  +RE M+++G+ K+ GCSW+++
Sbjct: 500 SVKVVREFMEKRGMTKEAGCSWLQI 524



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I+   +      A++ F  M   G+      L + L     V     GK++
Sbjct: 242 RNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEI 301

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + KS       V ++L+D+YAK   +     +F+ +  K+    N L++GY      
Sbjct: 302 HAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRM 361

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +E  + M   G   D  T  ALL  C+    A+ G ++   M++    +   V   +
Sbjct: 362 TEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFE-MMKMDYGISPTVEHYA 420

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
            L+++ G+ G + +AL++      +  G I      W S+L
Sbjct: 421 CLVDVLGRAGRIKEALEIVKNMPFKPTGSI------WGSLL 455



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           NL N+  ++  LI ++  C  V +A +VF   G     +++    +W +M   Y RNGY 
Sbjct: 104 NLLNNPTLKGKLITLFSVCRRVDEARRVFEDGGE----DVDLPESVWVAMGIGYSRNGYP 159

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           KE + LY  M+    +    AF   + ACS  G ++ G       V     +P     + 
Sbjct: 160 KEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTG-RAVHAQVLKATEDPDQVVNNA 218

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           L+ L    G  D+A ++ + M  R     +V  W +L++ 
Sbjct: 219 LLRLYSEDGCFDEALRVFDGMPHR-----NVVSWNSLIAG 253


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 205/387 (52%), Gaps = 15/387 (3%)

Query: 64  NGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFV 123
            G     +  F  M  HG+  D +     L +  S      G+ V A + + G     FV
Sbjct: 42  TGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFV 101

Query: 124 GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL 183
            ++LI +Y+   L+  A  +F  +P +N +  + +++GY     +   L L R M  LG+
Sbjct: 102 QTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGV 161

Query: 184 D---YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
           +    + FT+S +L AC  L A E G+  HAY+ +  C +  DV + ++LI+MY KCG V
Sbjct: 162 NDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDK--CGMPVDVVLGTALIDMYAKCGSV 219

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            KA  VF+  G       NKDV+ W++M+     +G  +E + L+  M+  G +P+ V F
Sbjct: 220 EKATWVFSNLGP------NKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTF 273

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + V  AC H G V  G +Y   M  DY + P  +HY C+VDL  RAG + +AW ++  M 
Sbjct: 274 LAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSM- 332

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
                   V +WGALLS     G  E  +LA +K +EL+P N G YV+LSN+YAK   W+
Sbjct: 333 ---PMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWE 389

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVTG 447
           ++  +R+LM+  G+KK  GCS IEV G
Sbjct: 390 DVRHVRDLMETMGIKKVPGCSLIEVGG 416



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 117/275 (42%), Gaps = 20/275 (7%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           +VHA     GL +   +  Q+ L+  Y++      +    N    +  RN + ++ +I+ 
Sbjct: 85  SVHAQILRFGLAIDPFV--QTSLISMYSS---SGLVDMARNLFAVMPERNVISWSCMING 139

Query: 61  FCRNGSPLYALKTFSFMH---VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           + R G    AL  F  M    V+ +  + + +   L A   +     GK   A++ K G 
Sbjct: 140 YVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGM 199

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEI-PVKNSVCANALLSGYCEAKLWAGGLELVR 176
              V +G+ALID+YAK   +  A  +F  + P K+ +  +A++SG     L    + L  
Sbjct: 200 PVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFS 259

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMY 234
            M   G+  +  T  A+  AC        G+    Y+ R   +      +Q    ++++Y
Sbjct: 260 KMINQGVRPNAVTFLAVFCACVHGGLVSEGKD---YLRRMTEDYSIIPTIQHYGCMVDLY 316

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           G+ G + +A  V           +  DV++W ++L
Sbjct: 317 GRAGRIKEAWNVVK------SMPMEPDVLVWGALL 345


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 218/389 (56%), Gaps = 18/389 (4%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           V  +FC+      AL+TF  M   GI+ D   L S+++A   +K    G Q+ A V  SG
Sbjct: 422 VQHEFCKE-----ALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSG 476

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           + + V + + L+ LYA+  +  +A   F+ I  K  +  N L+SG+ ++ L+   L++  
Sbjct: 477 YSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFM 536

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M   G  Y+ FT  + + A A L+  + G+Q+HA +I+      ++  + ++LI +YGK
Sbjct: 537 KMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKT--GYTSETEISNALISLYGK 594

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG +  A   F     R E       V W +++    ++G   E + L++ M   G KP 
Sbjct: 595 CGSIEDAKMDFFEMTKRNE-------VSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPS 647

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
           +V FV V++ACSH G V+ G+ YF+ M +++ + P P+HY+C+VD+L RAG+LD+A + +
Sbjct: 648 DVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFV 707

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
            EM       +   +W  LLSAC      E+G+ AA+  LEL+PH+   YV+LSN YA  
Sbjct: 708 EEMPI----PADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVT 763

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             W    Q+R++MK++G++K+ G SWIEV
Sbjct: 764 GKWASRDQIRKIMKDRGVRKEPGRSWIEV 792



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 190/371 (51%), Gaps = 25/371 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+ + +  V+S + +NG    A++ +  MH  G+    Y L S L+A T  +  + G
Sbjct: 103 LSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLG 162

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + +   V K G+ S  FVG+ALI LY +      A+ +F ++   +SV  N L+SG+ + 
Sbjct: 163 RLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQC 222

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L +   M   GL  D  T+++LL AC+ +     G+Q+H+Y+++   +L  D  
Sbjct: 223 GHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSL--DYI 280

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           M+ SL+++Y K G + +ALQ+F+ +G R       +VVLW  ML  YG+     +   ++
Sbjct: 281 MEGSLLDLYVKSGDIEEALQIFD-SGDR------TNVVLWNLMLVAYGQIDDLAKSFDIF 333

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVD 341
             ML  G +P++  +  ++  C+HTG++ LG +     +H   ++ G +        L+D
Sbjct: 334 YRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQ-----IHSLTIKNGFQSDMYVSGVLID 388

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELD 399
           +  + G LDKA ++++ + ++      V  W ++++    H+  K  L      +A  + 
Sbjct: 389 MYSKYGWLDKAQRILDMIEEK-----DVVSWTSMIAGYVQHEFCKEALETFKEMQACGIW 443

Query: 400 PHNVGIYVMLS 410
           P N+G+   +S
Sbjct: 444 PDNIGLASAIS 454



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 147/319 (46%), Gaps = 23/319 (7%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           +   F  M   G+  + +     L   T   +   G+Q+ +   K+G+ S ++V   LID
Sbjct: 329 SFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLID 388

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y+K   +  A+ + D I  K+ V   ++++GY + +     LE  + M A G+  D+  
Sbjct: 389 MYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIG 448

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L++ + ACAG+ A   G Q+HA +         DV + + L+ +Y +CG+  +A   F  
Sbjct: 449 LASAISACAGIKAVHQGSQIHARVY--VSGYSADVSIWNGLVYLYARCGISKEAFSSFEA 506

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
             H       K+ + W  ++  + ++G ++E +K++  M   G K +   FV+ ISA ++
Sbjct: 507 IEH-------KEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASAN 559

Query: 310 TGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
              +K G +     +H   ++ G     E  + L+ L  + G ++ A     EM  R   
Sbjct: 560 LADIKQGKQ-----IHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEV 614

Query: 366 SSSVSMWGALLSACHDCGK 384
           S     W  +++ C   G+
Sbjct: 615 S-----WNTIITCCSQHGR 628



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 159/343 (46%), Gaps = 34/343 (9%)

Query: 46  LNPRNPLPFNVVISDFCRNGSP-----LYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           + PR    FN  ++ F     P     L+A K   +M +  +       C+      S +
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDF----ACALRACRGSGR 56

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
                 ++ A     G      +G+ LIDLYAK   +  A  +F+E+ V+++V   A+LS
Sbjct: 57  RWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLS 116

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY +  L    + L R M   G+    + LS++L AC      + GR +H  + ++    
Sbjct: 117 GYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQ--GF 174

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            ++ F+ ++LI +Y +C       + F LA       +  D V + +++  + + G+   
Sbjct: 175 FSETFVGNALISLYLRC-------RSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDR 227

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-----DYKLEPGPEH 335
            + +++ M ++G  PD V   ++++ACS  G ++ G +   +++      DY +E     
Sbjct: 228 ALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIME----- 282

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
              L+DL  ++G++++A ++ +   DR    ++V +W  +L A
Sbjct: 283 -GSLLDLYVKSGDIEEALQIFDSG-DR----TNVVLWNLMLVA 319



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 79/158 (50%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +  + +N +IS F ++G    ALK F  M   G   + +   SS++AS ++ D + GKQ+
Sbjct: 510 KEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQI 569

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V K+G+ S   + +ALI LY K   I DA++ F E+  +N V  N +++   +    
Sbjct: 570 HARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRG 629

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
              L+L   M   GL     T   +L AC+ +   E G
Sbjct: 630 LEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEG 667


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/397 (32%), Positives = 215/397 (54%), Gaps = 11/397 (2%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +   G+   AL+ F  M    +  D   + + L+A         G+QV
Sbjct: 198 KDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQV 257

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +   G+ S++ + +ALIDLY K   +  A  +F+ +  K+ +  N L+ GY    L+
Sbjct: 258 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLY 317

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M   G   +  T+ ++L ACA L A + GR +H Y+ ++   + N   +++
Sbjct: 318 KEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRT 377

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A QVF       +  +N+ +  W +M+  +  +G       ++  M
Sbjct: 378 SLIDMYAKCGDIEAAQQVF-------DSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRM 430

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G +PD++ FV ++SACSH+G + LG   F  M  DYK+ P  EHY C++DLL  +G 
Sbjct: 431 RKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGL 490

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +A ++IN M     G     +W +LL AC   G  ELG+  AQ  ++++P N G YV+
Sbjct: 491 FKEAEEMINSMEMDPDG----VIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVL 546

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W+E+ + R L+ +KG+KK  GCS IE+
Sbjct: 547 LSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEI 583



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 189/407 (46%), Gaps = 48/407 (11%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA   +TGL      +  S+L+       H   L    +    +   N L +N +    
Sbjct: 21  IHAKMIKTGLHNTNYAL--SKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGH 78

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +  P+ AL  +  M   G+  ++Y     L A    K  R G+Q+  HV K G    +
Sbjct: 79  ALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDL 138

Query: 122 FVGSALIDLYAKLLLIHDA-------------------------------ELMFDEIPVK 150
           +V ++LI +Y K     DA                               + MFDEIPVK
Sbjct: 139 YVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVK 198

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V  NAL+SGY E   +   LEL + M    +  D  T+  +L ACA  ++ E GRQVH
Sbjct: 199 DVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVH 258

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           +++       G+++ + ++LI++Y KCG V  A  +F       EG   KDV+ W +++G
Sbjct: 259 SWIDDH--GFGSNLKIVNALIDLYIKCGEVETASGLF-------EGLSYKDVISWNTLIG 309

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y     +KE + L++ ML +G  P+EV  ++++ AC+H G + +G     ++    K  
Sbjct: 310 GYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGV 369

Query: 331 PGPEH-YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             P    + L+D+  + G+++ A ++ + ML+R     S+S W A++
Sbjct: 370 SNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNR-----SLSSWNAMI 411



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 166/371 (44%), Gaps = 69/371 (18%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL-----MFDEIPVKNSVCANALLSGY 162
           + A + K+G  ++ +  S LI+    +L  H   L     +FD I   N +  N +  G+
Sbjct: 21  IHAKMIKTGLHNTNYALSKLIEF--SVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGH 78

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
             +      L L   M +LGL  + +T   LL+ACA   A   G+Q+H ++++  C+L  
Sbjct: 79  ALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDL-- 136

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHR-----------------------LEGEIN 259
           D+++ +SLI MY K G    A +VF+ + HR                       +  EI 
Sbjct: 137 DLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIP 196

Query: 260 -KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            KDVV W +++  Y   G +KE ++L++ M+    KPDE   VTV+SAC+ +  ++LG +
Sbjct: 197 VKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQ 256

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA--------------WK---------- 354
              W + D+      +  + L+DL  + GE++ A              W           
Sbjct: 257 VHSW-IDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMN 315

Query: 355 -------LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK---LAAQKALELDPHNVG 404
                  L  EML  G   + V+M  ++L AC   G  ++G+   +   K L+   +   
Sbjct: 316 LYKEALLLFQEMLRSGESPNEVTML-SILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSS 374

Query: 405 IYVMLSNLYAK 415
           +   L ++YAK
Sbjct: 375 LRTSLIDMYAK 385


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 150/465 (32%), Positives = 234/465 (50%), Gaps = 50/465 (10%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +  +S L+  Y  C   ++   + + +     RN + +N +I+ + +NG    AL  F  
Sbjct: 186 VHIRSALVDMYAKCERPEDARRVFDAMP---ERNVVSWNSLITCYEQNGPVGEALMLFVE 242

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFV-GSALIDLYAKLL 135
           M   G   D   L S ++A   +   R G+QV AH+ K   L    V  +AL+D+YAK  
Sbjct: 243 MMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCG 302

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYC----------------EAKLWAGGL------- 172
              +A  +FD +P ++ V   ++L+GY                 E  + A  +       
Sbjct: 303 RTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 362

Query: 173 -----ELVRLMPALGLDY---DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--- 221
                E +RL   L  D     H+T   +L AC  ++  + G+Q H +++++        
Sbjct: 363 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGP 422

Query: 222 -NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            +DVF+ +SL++MY K G +    +VF       E    +D V W +M+  Y +NG  K+
Sbjct: 423 ESDVFVGNSLVDMYLKTGSIDDGAKVF-------ERMAARDNVSWNAMIVGYAQNGRAKD 475

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            + L+E ML +   PD V  + V+SAC H+G V  G  YF  M  D+ + P  +HY+C+V
Sbjct: 476 ALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMV 535

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RAG L +A +LIN+M        SV +W +LL AC      ELG+  A +  ELDP
Sbjct: 536 DLLGRAGHLKEAEELINDM---PMEPDSV-LWASLLGACRLHKNVELGEWTAGRLFELDP 591

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            N G YV+LSN+YA+   W E+ ++R  MK++G+ K  GCSWIE+
Sbjct: 592 QNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEI 636



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 176/354 (49%), Gaps = 37/354 (10%)

Query: 54  FNVVISDFCRNGS--PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           +N V++   R+G      AL+  + MH     L+ Y+  S+L+A  + KD+R G+QV   
Sbjct: 117 YNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGL 176

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V +S     V + SAL+D+YAK     DA  +FD +P +N V  N+L++ Y +       
Sbjct: 177 VARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEA 236

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L L   M A G   D  TLS+++ ACAGL+A   GRQVHA+M+ KC  L +D+ + ++L+
Sbjct: 237 LMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMV-KCDRLRDDMVLNNALV 295

Query: 232 EMYGKCGLVTKALQVFN-------------LAGHRLEGE-----------INKDVVLWTS 267
           +MY KCG   +A  +F+             L G+                + K+V+ W  
Sbjct: 296 DMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNV 355

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHD 326
           ++  Y +NG  +E I+L+  +  +   P    +  V++AC +   ++LG + +   +   
Sbjct: 356 LIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEG 415

Query: 327 YKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           ++ + GPE      + LVD+  + G +D   K+   M  R + S     W A++
Sbjct: 416 FRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVS-----WNAMI 464



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 142/336 (42%), Gaps = 44/336 (13%)

Query: 78  HVHGIFLDTYALCSSLTAS--TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
           H HG  L  +   SS  A    S  +    +   A + KS      F+ + L+  YA+L 
Sbjct: 7   HHHGQELVAHLRASSPLADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLG 66

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYC------EAKLW--------------------- 168
            + DA  +FDEIP++N+   NALLS Y       EA+                       
Sbjct: 67  RLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALAR 126

Query: 169 ------AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                 A  L  +  M A     + ++ ++ L ACA    +  G QVH  + R      +
Sbjct: 127 HGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARS--PHAD 184

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV ++S+L++MY KC     A +VF+    R       +VV W S++  Y +NG   E +
Sbjct: 185 DVHIRSALVDMYAKCERPEDARRVFDAMPER-------NVVSWNSLITCYEQNGPVGEAL 237

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L+  M+  G  PDEV   +V+SAC+     + G +    MV   +L       + LVD+
Sbjct: 238 MLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDM 297

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
             + G   +A  + + M  R   S +  + G   SA
Sbjct: 298 YAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSA 333


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/422 (34%), Positives = 220/422 (52%), Gaps = 44/422 (10%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +  N   L AL+ F+ M   G+  D     S L+A +++     G QV AHV 
Sbjct: 273 WNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVY 332

Query: 114 KSGWLSSVFVGSALIDLYAK-------------------LLL------------IHDAEL 142
           K G+ + + + SAL+D+Y+K                   +LL            I DA  
Sbjct: 333 KVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQ 392

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD +P K+ +  N+++ G+ +       L+L   M  LGL  D F+L+ ++ ACA +S+
Sbjct: 393 IFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISS 452

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            E G Q+ A        L  D  + +SL++ Y KCGLV    ++F+    R+   +  D 
Sbjct: 453 LELGEQIFARAT--IIGLEFDQIISTSLVDFYCKCGLVEHGRKLFD----RM---MKSDE 503

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V W SML  Y  NG+  E + +++ M   G +P ++ FV V+SAC H G V+ G ++F  
Sbjct: 504 VPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYA 563

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M  DY + PG EHYSC+VDL  RAG L+ A  LI +M  +    +  SMW ++L  C   
Sbjct: 564 MKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLK----ADTSMWSSVLRGCVAH 619

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
           G   LGK  A++ ++LDP N G YV LS +YA F  W    Q+R+LM +K + K  GCSW
Sbjct: 620 GNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKVPGCSW 679

Query: 443 IE 444
            +
Sbjct: 680 AD 681



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 132/294 (44%), Gaps = 39/294 (13%)

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC---EAKLWAGGLELVRLM 178
           F  + +I  +AK   +  A  +F+E+P KN +  N+++ GY      K   G  + + L 
Sbjct: 105 FSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLN 164

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
           P      D F L+ ++ AC  L A + G+Q+HA ++        D  + SSL+ +YGKCG
Sbjct: 165 PLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEF--DSVLGSSLVNLYGKCG 222

Query: 239 LVTKALQVFNL-------------AGHRLEGEINKD-----------VVLWTSMLGVYGR 274
            +  A  V NL             +G+   G +N             VVLW SM+  Y  
Sbjct: 223 DIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVA 282

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           N    E ++L+  M   G + D   F +V+SACS  G +  GI+      H YK+    +
Sbjct: 283 NNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVH---AHVYKVGFTND 339

Query: 335 HY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
               S LVD+  +    D A KL +++      +    +  ++++   +CG+ +
Sbjct: 340 IIIDSALVDMYSKCRRPDDACKLFSDL-----QAYDTILLNSMITVYSNCGRID 388



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 133/313 (42%), Gaps = 40/313 (12%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKN-------------------LGTLTNC 42
           VHAH ++ G      II  S L+  Y+ CR   +                   +   +NC
Sbjct: 327 VHAHVYKVGF--TNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNC 384

Query: 43  LKFLNPR---NPLP------FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
            +  + R   + +P      +N +I  F +N  P+ AL  F  M+  G+ +D ++L   +
Sbjct: 385 GRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVI 444

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           +A  S+     G+Q+ A  T  G      + ++L+D Y K  L+     +FD +   + V
Sbjct: 445 SACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEV 504

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N++L GY         L +   M ++G+     T   +L AC      E GR+   Y 
Sbjct: 505 PWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWF-YA 563

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG--- 270
           ++   ++   +   S ++++Y + GL+  A+ +        +  +  D  +W+S+L    
Sbjct: 564 MKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIE------QMPLKADTSMWSSVLRGCV 617

Query: 271 VYGRNGYFKEVIK 283
            +G N   K+V K
Sbjct: 618 AHGNNILGKKVAK 630


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 227/400 (56%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN   +NV+I  + R+G    A++ +  M  +G+  D +    +L A  ++ D   G++V
Sbjct: 126 RNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREV 185

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V  + W   +FV + L+D+YAK   + DA  +FD I V++SV  N++++ Y +    
Sbjct: 186 HERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRP 245

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L R M A G+     TL + + A A  +A   GR++H +  R+  +  +   +++
Sbjct: 246 MEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDK--LKT 303

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++MY K G V  A  +F       E  + +++V W +M+  YG +G+F E +KL+  M
Sbjct: 304 SLVDMYAKSGWVQVARVLF-------EQLMKRELVSWNAMICGYGMHGHFDEALKLFNKM 356

Query: 289 LMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
            +     PD + FV V+SAC+H G VK   E+F  MV  Y ++P  +H++CLVD+L  AG
Sbjct: 357 RVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAG 416

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
             ++A+ LI  M  +        +WGALL+ C      ELG+LA QK +EL+P + G YV
Sbjct: 417 RFEEAYDLIKGMPMQ----PDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYV 472

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+YA+   W++  ++R+LM  +GLKK +GCSWIE+ G
Sbjct: 473 LLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKG 512



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 148/325 (45%), Gaps = 22/325 (6%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S L +  + +    G+Q+   +  SG      + + L+DLYA   L+  A  +FD +P +
Sbjct: 67  SVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPKR 126

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N    N L+  Y         ++L R M   G++ D+FT    L+ACA L   E GR+VH
Sbjct: 127 NVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVH 186

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
             ++    + G D+F+ + L++MY KCG V  A  VF+    R       D V+W SM+ 
Sbjct: 187 ERVL--GTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVR-------DSVVWNSMIA 237

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY--FEWMVHDYK 328
            YG+NG   E + L   M  NG  P     V+ ISA +    +  G E   F W      
Sbjct: 238 AYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWR---RG 294

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF-EL 387
            +   +  + LVD+  ++G +  A  L  +++ R      +  W A++      G F E 
Sbjct: 295 FDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKR-----ELVSWNAMICGYGMHGHFDEA 349

Query: 388 GKLAAQKALE--LDPHNVGIYVMLS 410
            KL  +  +E  + P N+    +LS
Sbjct: 350 LKLFNKMRVEAQVTPDNITFVGVLS 374


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 221/398 (55%), Gaps = 15/398 (3%)

Query: 49   RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
            +NP+ ++++I  F + G  +   KTF  +  +G+  D Y L   + A         G+ +
Sbjct: 1144 KNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLI 1203

Query: 109  QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
               V K G     FV +AL+D+YAK  +I DA+L+FD +P K+ V    ++ GY E    
Sbjct: 1204 HCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNA 1263

Query: 169  AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
               L L   +   G   D   + +++ ACA L A    R VH Y+ R   +L  DV + +
Sbjct: 1264 KESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSL--DVILGT 1321

Query: 229  SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            ++I+MY KCG V  A ++F+   H       K+V+ W++M+  YG +G  K+ ++L+  M
Sbjct: 1322 AMIDMYAKCGDVDSAREIFDNMHH-------KNVISWSAMIAAYGYHGQGKKALELFPMM 1374

Query: 289  LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            L +G  P+ + FV+++ ACSH G V+ G+     M   + + P  +H++C+VDLL RAG+
Sbjct: 1375 LSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQ 1434

Query: 349  LDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L +A++ I  M +++  G     +W +LL AC    + +L + AA+  LEL P N G Y+
Sbjct: 1435 LTEAFRFIENMTVEKDEG-----LWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYI 1489

Query: 408  MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            +LSN+YA    W ++ ++R+LM ++ LKK  G +WIE+
Sbjct: 1490 LLSNIYANAGQWKDVAKIRDLMTKRKLKKIPGYTWIEL 1527



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 161/317 (50%), Gaps = 41/317 (12%)

Query: 106  KQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            KQ+ A +T +  L +++ V + L+ +Y     + DA  +FDE+P KN V  + ++ G+ +
Sbjct: 1099 KQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVK 1158

Query: 165  AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
               +    +  + +   G+  D++TL  +++AC    A + GR +H  +++   +L  D 
Sbjct: 1159 VGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHL--DH 1216

Query: 225  FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            F+ ++L++MY KC ++  A  +F++         +KD+V WT M+G Y   G  KE + L
Sbjct: 1217 FVCAALVDMYAKCKVIEDAKLLFDVMP-------SKDLVTWTVMIGGYAECGNAKESLVL 1269

Query: 285  YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS------- 337
            ++ +   G  PD++A V++++AC+     KLG       VH+Y        +S       
Sbjct: 1270 FDHLREEGFVPDKIAMVSIVNACA-----KLGAMNKARFVHEY---VNRNRFSLDVILGT 1321

Query: 338  CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCGKFELGKLAAQKA 395
             ++D+  + G++D A     E+ D  H  + +S W A+++A   H  GK         KA
Sbjct: 1322 AMIDMYAKCGDVDSA----REIFDNMHHKNVIS-WSAMIAAYGYHGQGK---------KA 1367

Query: 396  LELDPHNVGIYVMLSNL 412
            LEL P  +   ++ +N+
Sbjct: 1368 LELFPMMLSSGILPNNI 1384


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 252/447 (56%), Gaps = 20/447 (4%)

Query: 5   HQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRN 64
           H F    + +  +   + L+  Y+ C    ++ T       +  ++ + +N +IS F +N
Sbjct: 337 HAFVIKNVAVTQVCVMNALIAMYSRC---NSIDTSFKIFDNMPEKDVVSWNTMISAFVQN 393

Query: 65  GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG 124
           G    AL  F  M    + +D+  + + L+A++ +++   GKQ   ++ ++G +    + 
Sbjct: 394 GLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNG-IQFEGMD 452

Query: 125 SALIDLYAKLLLIHDAELMFDEI--PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           S LID+YAK  LI  A+ +F++     ++    N+++SGY +  L      ++R M    
Sbjct: 453 SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQK 512

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  +  TL+++L AC      ++G+Q+H + IR   +L  +VF+ ++LI+MY K G +  
Sbjct: 513 VMPNVVTLASILPACNPSGYIDWGKQLHGFSIRN--DLDQNVFVATALIDMYSKSGSIAH 570

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A  VF+ A         K +V +++M+  YG++G  +  + ++  M  +G +PD V  V 
Sbjct: 571 AENVFSKANE-------KSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVA 623

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           V+SACS+ G V  G++ FE M   Y ++P  EH+ C+ D+L RAG +DKA++ +  + ++
Sbjct: 624 VLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEK 683

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN--VGIYVMLSNLYAKFCMWD 420
           G+    + +WG+LL+AC    +FELGKL A+K LE++  N   G +V+LSN+YA+   W+
Sbjct: 684 GN---VMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWE 740

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVTG 447
            +  +R+ M+E+GLKK+ G SWIE+ G
Sbjct: 741 NVDIVRKQMRERGLKKETGSSWIEIAG 767



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 148/313 (47%), Gaps = 14/313 (4%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSV 99
           NCL+    RN   +N +IS F +N   L  ++ F   +      +D   L S+++A++ +
Sbjct: 272 NCLE----RNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHL 327

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           +     +Q+ A V K+  ++ V V +ALI +Y++   I  +  +FD +P K+ V  N ++
Sbjct: 328 QKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMI 387

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           S + +  L    L L   M    L  D  T++ALL A + L   + G+Q H Y++R    
Sbjct: 388 SAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ 447

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
                 M S LI+MY K GL+  A  VF  +         +D   W SM+  Y +NG   
Sbjct: 448 FEG---MDSYLIDMYAKSGLIEAAQNVFEKSFSH-----ERDQATWNSMMSGYTQNGLVD 499

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           +   +   ML     P+ V   +++ AC+ +G +  G +   + + +  L+      + L
Sbjct: 500 QAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRN-DLDQNVFVATAL 558

Query: 340 VDLLCRAGELDKA 352
           +D+  ++G +  A
Sbjct: 559 IDMYSKSGSIAHA 571



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 103/464 (22%), Positives = 196/464 (42%), Gaps = 67/464 (14%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTN----------CLKFLNPRNP 51
           VHAH F   L+    I++ S L + Y+ C      G + +              +  R  
Sbjct: 118 VHAH-FLRCLMNPSRIVYNSLLNM-YSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTV 175

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +I+ + R      A+K FS M   GI     +  +   A +S+ D +    V   
Sbjct: 176 VAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGM 235

Query: 112 VTKSG--WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           + K G  +++ ++V S+ I +YA+L  +  A+ +FD    +N+   N ++S + +     
Sbjct: 236 LVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSL 295

Query: 170 GGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G++L  + + +     D  TL + + A + L   E   Q+HA++I+        V + +
Sbjct: 296 EGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVA--VTQVCVMN 353

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI MY +C  +  + ++F       +    KDVV W +M+  + +NG   E + L+  M
Sbjct: 354 ALIAMYSRCNSIDTSFKIF-------DNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEM 406

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY---SCLVDLLCR 345
                  D V    ++SA S      +G +      H Y L  G +     S L+D+  +
Sbjct: 407 KKQDLMVDSVTVTALLSAASDLRNPDIGKQ-----THGYLLRNGIQFEGMDSYLIDMYAK 461

Query: 346 AGEL---------------------------------DKAWKLINEMLDRGHGSSSVSMW 372
           +G +                                 D+A+ ++ +MLD+    + V++ 
Sbjct: 462 SGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTL- 520

Query: 373 GALLSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNLYAK 415
            ++L AC+  G  + GK     ++  D   NV +   L ++Y+K
Sbjct: 521 ASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSK 564



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 152/348 (43%), Gaps = 33/348 (9%)

Query: 51  PLP----FNVVISDFCRNGSPLYALKTFSFMHVHG--IFLDTYALCSSLTASTSVKDARF 104
           P P    +N +I     N  P  AL  +S M      +  D+Y   S L A    ++   
Sbjct: 55  PRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRNLVV 114

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYA---------KLLLIHD----AELMFDEIPVKN 151
           GK V AH  +     S  V ++L+++Y+         K++  +        +FD +  + 
Sbjct: 115 GKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRT 174

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N L++ Y   + +A  ++   +M  +G+     +   +  A + L   +    VH 
Sbjct: 175 VVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHG 234

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            +++      ND+++ SS I MY + G +  A +VF       +  + ++  +W +M+  
Sbjct: 235 MLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVF-------DNCLERNTEVWNTMISA 287

Query: 272 YGRNGYFKEVIKL-YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
           + +N +  E I+L ++A+       DEV  ++ ISA SH  + +L  +   +++ +  + 
Sbjct: 288 FVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVT 347

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
                 + L+ +  R   +D ++K+ + M ++      V  W  ++SA
Sbjct: 348 QVCV-MNALIAMYSRCNSIDTSFKIFDNMPEK-----DVVSWNTMISA 389



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 115/265 (43%), Gaps = 44/265 (16%)

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYC------EAKLWAGGLELVRLMPALGLDYDHFTL 190
           +H A  +FD +P  ++V  N ++ G        EA L+   ++      +  +  D +T 
Sbjct: 44  LHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMK----SSSPQVKCDSYTY 99

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF--- 247
           S++L+ACA       G+ VHA+ +R  C +     + +SL+ MY  C   T   ++    
Sbjct: 100 SSVLKACADTRNLVVGKAVHAHFLR--CLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 157

Query: 248 ---NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
              +L     +    + VV W +++  Y R   + E +K +  M+  G KP  V+FV V 
Sbjct: 158 SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVF 217

Query: 305 SACSHTGQ-----------VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            A S  G            VKLG EY    V+D  +       S  + +    G L+ A 
Sbjct: 218 PAFSSLGDFKNANVVHGMLVKLGSEY----VNDLYV------VSSAIFMYAELGCLEFAK 267

Query: 354 KLINEMLDRGHGSSSVSMWGALLSA 378
           K+ +  L+R     +  +W  ++SA
Sbjct: 268 KVFDNCLER-----NTEVWNTMISA 287


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 231/451 (51%), Gaps = 26/451 (5%)

Query: 1   NVHAHQFETGLLL-----ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFN 55
            +H+     GL L      CLI   ++  +  + C  +K    + +        N   + 
Sbjct: 292 QLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD-------HNVFSWT 344

Query: 56  VVISDFCRNGS-PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
            +I+ + + G     AL  F  M +  +  + +   S+L A  ++   R G+QV  H  K
Sbjct: 345 AMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVK 404

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            G+ S   V ++LI +YA+   I DA   FD +  KN +  N ++  Y +       LEL
Sbjct: 405 LGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALEL 464

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              +   G+    FT ++LL   A +     G Q+HA +I+    L   V   ++LI MY
Sbjct: 465 FNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVC--NALISMY 522

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            +CG +  A QVF       E   +++V+ WTS++  + ++G+  + ++L+  ML  G +
Sbjct: 523 SRCGNIESAFQVF-------EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVR 575

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           P+ V ++ V+SACSH G V  G ++F+ M  ++ + P  EHY+C+VD+L R+G L +A +
Sbjct: 576 PNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQ 635

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
            IN M  +    +   +W   L AC   G  ELGK AA+  +E +PH+   Y++LSNLYA
Sbjct: 636 FINSMPYK----ADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYA 691

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
               WDE+  +R+ MKEK L K+ GCSW+EV
Sbjct: 692 STSKWDEVSNIRKAMKEKNLIKEAGCSWVEV 722



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 158/326 (48%), Gaps = 24/326 (7%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           + R+ + ++ ++S F  N     AL TF  M  +G + + Y   ++  A ++ +    G 
Sbjct: 129 SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGD 188

Query: 107 QVQAHVTKSGWLSS-VFVGSALIDLYAKLL-LIHDAELMFDEIPVKNSVCANALLSGYCE 164
            +   V K+G+L S V VG  LID++ K    +  A  +F+++P +N+V    +++   +
Sbjct: 189 SIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQ 248

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  ++L   M   G + D FTLS ++ ACA +     G+Q+H+  IR    L  D 
Sbjct: 249 FGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTL--DR 306

Query: 225 FMQSSLIEMYGKC---GLVTKALQVFNLAGHRLEGEINKDVVLWTSML-GVYGRNGYFKE 280
            +   LI MY KC   G +  A ++F+         ++ +V  WT+M+ G   + GY +E
Sbjct: 307 CVGCCLINMYAKCSVDGSMCAARKIFDQI-------LDHNVFSWTAMITGYVQKGGYDEE 359

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC-- 338
            + L+  M++    P+   F + + AC++   +++G + F    H  KL  G    +C  
Sbjct: 360 ALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF---THAVKL--GFSSVNCVA 414

Query: 339 --LVDLLCRAGELDKAWKLINEMLDR 362
             L+ +  R+G +D A K  + + ++
Sbjct: 415 NSLISMYARSGRIDDARKAFDILFEK 440



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T S  L+ C    + + G  VH  + +   +L  D    +SLI +Y KCG   KA  +F 
Sbjct: 68  TYSLFLKKCIRTRSFDIGTLVHEKLTQS--DLQLDSVTLNSLISLYSKCGQWEKATSIFQ 125

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           L G       ++D++ W++M+  +  N      +  +  M+ NG  P+E  F     ACS
Sbjct: 126 LMGS------SRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS 179

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA-GELDKAWKLINEMLDR 362
               V +G   F ++V    L+        L+D+  +  G+L  A+K+  +M +R
Sbjct: 180 TAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPER 234



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 23/351 (6%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+F    NP P    +     NG    A+ T   M   G   D       L      +  
Sbjct: 23  LQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 103 RFGKQVQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEI-PVKNSVCANALLS 160
             G  V   +T+S   L SV + S LI LY+K      A  +F  +   ++ +  +A++S
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNS-LISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVS 141

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            +    +    L     M   G   + +  +A  RAC+       G  +  +++ K   L
Sbjct: 142 CFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVV-KTGYL 200

Query: 221 GNDVFMQSSLIEMYGKC-GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
            +DV +   LI+M+ K  G +  A +VF       E    ++ V WT M+    + GY  
Sbjct: 201 QSDVCVGCGLIDMFVKGRGDLVSAFKVF-------EKMPERNAVTWTLMITRLMQFGYAG 253

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLEPGPEHYSC 338
           E I L+  M+++G +PD      VISAC++   + LG + + + + H   L+       C
Sbjct: 254 EAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG--CC 311

Query: 339 LVDLLCRA---GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           L+++  +    G +  A K+ +++LD      +V  W A+++     G ++
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDH-----NVFSWTAMITGYVQKGGYD 357


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/399 (34%), Positives = 218/399 (54%), Gaps = 14/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +  + +N +I+ +   G  +  ++ F  M+  G+      L S+L A +       GK V
Sbjct: 271 KTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFV 330

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC-EAKL 167
             ++ ++     +F+ S+L+DLY K   +  AE +F  +P   +V  N ++SGY  E KL
Sbjct: 331 HGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKL 390

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +   L L   M    ++ D  T +++L AC+ L+A E GR++H  ++ +  NLGN+  + 
Sbjct: 391 F-DALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVER--NLGNNEVVM 447

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
            +L++MY KCG V +A  VF     R       D+V WTSM+  YG +G   E ++L+  
Sbjct: 448 GALLDMYAKCGAVEEAFGVFKCLPER-------DLVSWTSMITAYGSHGRVYEALELFAE 500

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           ML +  KPD V F+ ++SACSH G V  G+ +F  M++ Y + P  EHYSCL+ LL RAG
Sbjct: 501 MLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAG 560

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L +A++++         S    +   L SAC      +LG   A+  ++ DP +   Y+
Sbjct: 561 RLHEAYEILQS---NPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYI 617

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +LSN+YA F  WDE+  +R  MK+ GLKK+ GCSWIE+ 
Sbjct: 618 ILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEIN 656



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 15/301 (4%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D+Y   S L A   ++    G+ +   + K G +  + VGS+L+ +YAK      A  +F
Sbjct: 105 DSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLF 164

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           DE+P K+  C N ++S Y ++  +   L    +M   G + D  T++  + +CA L   +
Sbjct: 165 DEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLD 224

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            GR++H  ++     +  D F+ ++L++MYGKCG +  A++VF       E   NK VV 
Sbjct: 225 RGREIHKELVNSGFRM--DSFVSAALVDMYGKCGQLEMAIEVF-------EQMPNKTVVA 275

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W SM+  YG  G     I+L++ M   G KP      + + ACS + Q+  G     +++
Sbjct: 276 WNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYII 335

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            + +++P     S L+DL  + G+++ A  +   M      +++VS W  ++S     GK
Sbjct: 336 RN-RIQPDIFLNSSLMDLYFKCGKVESAETIFKLM----PKTTTVS-WNVMISGYVTEGK 389

Query: 385 F 385
            
Sbjct: 390 L 390



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 174/359 (48%), Gaps = 17/359 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N VIS + ++G    AL+ F  M   G   D+  + +++++   + D   G+++   + 
Sbjct: 175 WNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELV 234

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            SG+    FV +AL+D+Y K   +  A  +F+++P K  V  N++++GY         ++
Sbjct: 235 NSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQ 294

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L + M + G+     TL++ L AC+  +    G+ VH Y+IR    +  D+F+ SSL+++
Sbjct: 295 LFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRN--RIQPDIFLNSSLMDL 352

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V  A  +F L             V W  M+  Y   G   + ++L+  M  +  
Sbjct: 353 YFKCGKVESAETIFKLMP-------KTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFV 405

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +PD + F +V++ACS    ++ G E    +V +  L         L+D+  + G +++A+
Sbjct: 406 EPDAITFTSVLAACSQLAALEKGREIHNLIV-ERNLGNNEVVMGALLDMYAKCGAVEEAF 464

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGK-FELGKLAAQK-ALELDPHNVGIYVMLS 410
            +   + +R   S     W ++++A    G+ +E  +L A+     + P  V    +LS
Sbjct: 465 GVFKCLPERDLVS-----WTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILS 518



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 150/299 (50%), Gaps = 21/299 (7%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           +D   L   L AS + K  + GK +   V   G  + V+V   LI LY    L   A+ +
Sbjct: 1   MDARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNV 60

Query: 144 FD--EIPVKNSVCANALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGL 200
           FD  E P + S+C N L++GY    ++   L L  +LM    L  D +T  ++L+AC GL
Sbjct: 61  FDVIENPFEISLC-NGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGL 119

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                G+ +H  ++++   L  D+ + SSL+ MY KC     A+++F+          +K
Sbjct: 120 RRVVLGQMIHTCLVKE--GLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMP-------DK 170

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           DV  W +++  Y ++G F+E ++ +  M   G +PD V   T IS+C+    +  G E  
Sbjct: 171 DVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIH 230

Query: 321 EWMVHD-YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + +V+  ++++      + LVD+  + G+L+ A ++  +M ++     +V  W ++++ 
Sbjct: 231 KELVNSGFRMDSFVS--AALVDMYGKCGQLEMAIEVFEQMPNK-----TVVAWNSMING 282



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 26/259 (10%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           D   L  LLRA     + + G+ +H  ++     L NDV++  +LI +Y  C L   A  
Sbjct: 2   DARKLIPLLRASVNSKSLKQGKVLHQKVVT--LGLQNDVYVCKNLISLYVSCNLFDYAKN 59

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVI 304
           VF++  +  E      + L   ++  Y RN  + E + L++ ++     KPD   + +V+
Sbjct: 60  VFDVIENPFE------ISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVL 113

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEML 360
            AC    +V LG      M+H   ++ G        S LV +  +  E + A KL +EM 
Sbjct: 114 KACGGLRRVVLG-----QMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMP 168

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           D+      V+ W  ++S  +  GKFE  L      +    +P +V I   +S+  A+   
Sbjct: 169 DK-----DVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSC-ARLLD 222

Query: 419 WDEIGQLRELMKEKGLKKD 437
            D   ++ + +   G + D
Sbjct: 223 LDRGREIHKELVNSGFRMD 241



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 139/357 (38%), Gaps = 48/357 (13%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I   S LM  Y  C   ++  T+    K +     + +NV+IS +   G    AL+ F  
Sbjct: 343 IFLNSSLMDLYFKCGKVESAETI---FKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGE 399

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M    +  D     S L A + +     G+++   + +    ++  V  AL+D+YAK   
Sbjct: 400 MSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGA 459

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + +A  +F  +P ++ V   ++++ Y         LEL   M    +  D  T  A+L A
Sbjct: 460 VEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSA 519

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+           HA ++       + ++  + +I +YG                     
Sbjct: 520 CS-----------HAGLV------DDGLYHFNQMINVYG--------------------- 541

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV-TVISACSHTGQVKL 315
            I   +  ++ ++ + GR G   E    YE +  N    D+   + T+ SAC     + L
Sbjct: 542 -IIPRIEHYSCLITLLGRAGRLHEA---YEILQSNPEISDDFQLLSTLFSACRLHKNLDL 597

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           G+E  E ++   K       Y  L ++    G+ D+   + ++M D G   +    W
Sbjct: 598 GVEIAENLID--KDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSW 652


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 250/447 (55%), Gaps = 20/447 (4%)

Query: 5   HQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRN 64
           H F    + +  +   + L+  Y+ C    ++ T       +  ++ + +N +IS F +N
Sbjct: 313 HAFVIKNVAVTQVCVMNALIAMYSRC---NSIDTSFKIFDNMPEKDVVSWNTMISAFVQN 369

Query: 65  GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG 124
           G    AL  F  M    + +D+  + + L+A++ +++   GKQ   ++ ++G +    + 
Sbjct: 370 GLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNG-IQFEGMD 428

Query: 125 SALIDLYAKLLLIHDAELMFDEI--PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           S LID+YAK  LI  A+ +F++     ++    N+++SGY +  L      ++R M    
Sbjct: 429 SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQK 488

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  +  TL+++L AC      ++G+Q+H + IR   +L  +VF+ ++LI+MY K G +  
Sbjct: 489 VMPNVVTLASILPACNPSGYIDWGKQLHGFSIRN--DLDQNVFVATALIDMYSKSGSIAH 546

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A  VF+ A         K +V +++M+  YG++G  +  + ++  M  +G +PD V  V 
Sbjct: 547 AENVFSKANE-------KSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVA 599

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           V+SACS+ G V  G++ FE M   Y ++P  EH+ C+ D+L RAG +DKA++ +   +  
Sbjct: 600 VLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFV---IGL 656

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN--VGIYVMLSNLYAKFCMWD 420
           G   + + +WG+LL+AC    +FELGKL A+K LE++  N   G +V+LSN+YA+   W+
Sbjct: 657 GEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWE 716

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVTG 447
            +  +R+ M+E+GLKK+ G SWIE+ G
Sbjct: 717 NVDIVRKQMRERGLKKETGSSWIEIAG 743



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 148/313 (47%), Gaps = 14/313 (4%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSV 99
           NCL+    RN   +N +IS F +N   L  ++ F   +      +D   L S+++A++ +
Sbjct: 248 NCLE----RNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHL 303

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           +     +Q+ A V K+  ++ V V +ALI +Y++   I  +  +FD +P K+ V  N ++
Sbjct: 304 QKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMI 363

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           S + +  L    L L   M    L  D  T++ALL A + L   + G+Q H Y++R    
Sbjct: 364 SAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ 423

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
                 M S LI+MY K GL+  A  VF  +         +D   W SM+  Y +NG   
Sbjct: 424 FEG---MDSYLIDMYAKSGLIEAAQNVFEKSFSH-----ERDQATWNSMMSGYTQNGLVD 475

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           +   +   ML     P+ V   +++ AC+ +G +  G +   + + +  L+      + L
Sbjct: 476 QAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRN-DLDQNVFVATAL 534

Query: 340 VDLLCRAGELDKA 352
           +D+  ++G +  A
Sbjct: 535 IDMYSKSGSIAHA 547



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 103/464 (22%), Positives = 196/464 (42%), Gaps = 67/464 (14%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTN----------CLKFLNPRNP 51
           VHAH F   L+    I++ S L + Y+ C      G + +              +  R  
Sbjct: 94  VHAH-FLRCLMNPSRIVYNSLLNM-YSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTV 151

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +I+ + R      A+K FS M   GI     +  +   A +S+ D +    V   
Sbjct: 152 VAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGM 211

Query: 112 VTKSG--WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           + K G  +++ ++V S+ I +YA+L  +  A+ +FD    +N+   N ++S + +     
Sbjct: 212 LVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSL 271

Query: 170 GGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G++L  + + +     D  TL + + A + L   E   Q+HA++I+        V + +
Sbjct: 272 EGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVA--VTQVCVMN 329

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI MY +C  +  + ++F       +    KDVV W +M+  + +NG   E + L+  M
Sbjct: 330 ALIAMYSRCNSIDTSFKIF-------DNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEM 382

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY---SCLVDLLCR 345
                  D V    ++SA S      +G +      H Y L  G +     S L+D+  +
Sbjct: 383 KKQDLMVDSVTVTALLSAASDLRNPDIGKQ-----THGYLLRNGIQFEGMDSYLIDMYAK 437

Query: 346 AGEL---------------------------------DKAWKLINEMLDRGHGSSSVSMW 372
           +G +                                 D+A+ ++ +MLD+    + V++ 
Sbjct: 438 SGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTL- 496

Query: 373 GALLSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNLYAK 415
            ++L AC+  G  + GK     ++  D   NV +   L ++Y+K
Sbjct: 497 ASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSK 540



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 154/348 (44%), Gaps = 30/348 (8%)

Query: 48  PR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHG--IFLDTYALCSSLTASTSVKDARF 104
           PR + + +N +I     N  P  AL  +S M      +  D+Y   S L A    ++   
Sbjct: 31  PRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRNLVV 90

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYA---------KLLLIHD----AELMFDEIPVKN 151
           GK V AH  +     S  V ++L+++Y+         K++  +        +FD +  + 
Sbjct: 91  GKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRT 150

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N L++ Y   + +A  ++   +M  +G+     +   +  A + L   +    VH 
Sbjct: 151 VVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHG 210

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            +++      ND+++ SS I MY + G +  A +VF       +  + ++  +W +M+  
Sbjct: 211 MLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVF-------DNCLERNTEVWNTMISA 263

Query: 272 YGRNGYFKEVIKL-YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
           + +N +  E I+L ++A+       DEV  ++ ISA SH  + +L  +   +++ +  + 
Sbjct: 264 FVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVT 323

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
                 + L+ +  R   +D ++K+ + M ++      V  W  ++SA
Sbjct: 324 QVCV-MNALIAMYSRCNSIDTSFKIFDNMPEK-----DVVSWNTMISA 365



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 115/265 (43%), Gaps = 44/265 (16%)

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYC------EAKLWAGGLELVRLMPALGLDYDHFTL 190
           +H A  +FD +P  ++V  N ++ G        EA L+   ++      +  +  D +T 
Sbjct: 20  LHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMK----SSSPQVKCDSYTY 75

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF--- 247
           S++L+ACA       G+ VHA+ +R  C +     + +SL+ MY  C   T   ++    
Sbjct: 76  SSVLKACADTRNLVVGKAVHAHFLR--CLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 133

Query: 248 ---NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
              +L     +    + VV W +++  Y R   + E +K +  M+  G KP  V+FV V 
Sbjct: 134 SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVF 193

Query: 305 SACSHTGQ-----------VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            A S  G            VKLG EY    V+D  +       S  + +    G L+ A 
Sbjct: 194 PAFSSLGDFKNANVVHGMLVKLGSEY----VNDLYV------VSSAIFMYAELGCLEFAK 243

Query: 354 KLINEMLDRGHGSSSVSMWGALLSA 378
           K+ +  L+R     +  +W  ++SA
Sbjct: 244 KVFDNCLER-----NTEVWNTMISA 263


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/453 (31%), Positives = 228/453 (50%), Gaps = 49/453 (10%)

Query: 29  TCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHG---IF 83
            C H           K +   N   +N +I  +  N   + A+  +  M  H HG   IF
Sbjct: 55  VCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIF 114

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
            D +     + +   +     GKQV  HV K G  S+  V ++L+++Y K   + DA  +
Sbjct: 115 PDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKV 174

Query: 144 FDEIPVKNSVCAN-------------------------------ALLSGYCEAKLWAGGL 172
           F+E+  +++V  N                               A++SGY     +A  L
Sbjct: 175 FEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADAL 234

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           E  R M  +G++ D  +L ++L ACA L A E G+ +H Y  +       ++ + ++LIE
Sbjct: 235 EFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADK--AGFLRNICVCNALIE 292

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY KCG + +  ++F+    R       DV+ W++M+     +G   E I+L++ M    
Sbjct: 293 MYAKCGSIDEGRRLFDQMNER-------DVISWSTMIVGLANHGRAHEAIELFQEMQKAK 345

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            +P+ + FV ++SAC+H G +  G+ YFE M  DY +EPG EHY CLV+LL  +G LD+A
Sbjct: 346 IEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQA 405

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
            +LI +M  +       ++WG+LLS+C      E+  +A +  LEL+P + G YV+LSNL
Sbjct: 406 LELIKKMPMK----PDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNL 461

Query: 413 YAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           YA    WD + ++R+LM+ K +KK  GCS IEV
Sbjct: 462 YADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEV 494



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 156/328 (47%), Gaps = 56/328 (17%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++ AH+ K     S F+ + ++D+         A L+F  +   N+   NA++  Y   
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHN 90

Query: 166 KLWAGGLELVRLMPALGLDY-------DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           K++   + + + M  LG  +       D FT   ++++CAGL   + G+QVH ++ +   
Sbjct: 91  KVYVLAITVYKQM--LGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFK--F 146

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI------- 258
              ++  +++SL+EMY KC  +  A +VF              ++GH   G++       
Sbjct: 147 GQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIF 206

Query: 259 ----NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
               +K +  WT+++  Y R G + + ++ +  M M G +PDE++ V+V+ AC+  G ++
Sbjct: 207 EEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALE 266

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
           LG    +W +H Y  + G     C    L+++  + G +D+  +L ++M +R      V 
Sbjct: 267 LG----KW-IHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNER-----DVI 316

Query: 371 MWGALLSACHDCGKFELGKLAAQKALEL 398
            W  ++    + G+       A +A+EL
Sbjct: 317 SWSTMIVGLANHGR-------AHEAIEL 337


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/459 (31%), Positives = 246/459 (53%), Gaps = 29/459 (6%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HAH F   L +   I   + L+  Y+ CR    +G      + L  R+ + +N +++ +
Sbjct: 349 IHAHIFRLSLEVDTSIT--NSLITFYSKCRE---VGKAREIFERLLLRDIISWNSMLAGY 403

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA----RFGKQVQAHV----T 113
            +N         F  M + GI  D+++L     A++         R GK++  ++    T
Sbjct: 404 EQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRIT 463

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
             G   S+ V +A++ +YAK   I DAE +F  +  ++S   NA++ GY     +   L 
Sbjct: 464 PGG--VSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLM 521

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR-----KCCNLGNDVFMQS 228
           +   +   G   DH +LS LL +C  L + + G+Q HA + +      C +  + + + +
Sbjct: 522 IFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINN 581

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI MY KCG +  A QVF      L+ E  KDV  WT+M+     +G   E ++L+E M
Sbjct: 582 ALISMYSKCGSIKDAAQVF------LKME-RKDVFSWTAMITGCAHHGLAVEALQLFERM 634

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G KP++V F+ ++ AC+H G V+ G  YF+ M +DY L P  EHY+C++DL  R+G+
Sbjct: 635 KTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQ 694

Query: 349 LDKAWKLIN--EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
            D+A  L+     L + +    +++W  LL ACH   + +LG  AA K LEL+P +   Y
Sbjct: 695 FDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATY 754

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           ++L+NLYA   +W++  ++R+ M++KGL+K+VGCSWI+ 
Sbjct: 755 ILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDT 793



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/409 (20%), Positives = 181/409 (44%), Gaps = 46/409 (11%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV--HGIFLDTYALCSS 92
           NL   +   + ++ ++ + +N +I+   + G    AL  F  M      +  +     S 
Sbjct: 274 NLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSL 333

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L+A + +   R G+++ AH+ +        + ++LI  Y+K   +  A  +F+ + +++ 
Sbjct: 334 LSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDI 393

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL----RACAGLSAAEFGRQ 208
           +  N++L+GY + +      ++ + M   G++ D  +L+ +     R  +GL     G++
Sbjct: 394 ISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKE 453

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +H Y++R+    G  + + +++++MY K   +  A ++F       +G  N+D   W +M
Sbjct: 454 IHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIF-------KGMKNRDSYSWNAM 506

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y RN  F++V+ ++  +L  G   D V+   ++++C     ++LG ++   +   + 
Sbjct: 507 MDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFN 566

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
            +  P                              H  S +S+  AL+S    CG     
Sbjct: 567 GQDCP------------------------------HQDSLLSINNALISMYSKCGSI--- 593

Query: 389 KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           K AAQ  L+++  +V  +  +    A   +  E  QL E MK  G+K +
Sbjct: 594 KDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPN 642



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 131/265 (49%), Gaps = 21/265 (7%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A+ +FD  P ++ +  +AL++ Y     +A    L + M   GL  + F+L++LL+    
Sbjct: 74  AQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCS 133

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
                  RQ+H + IR     G D  ++++ I MY +CG++  A +VF+         + 
Sbjct: 134 TGEIGLCRQLHGWSIRT--GFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSL-----LA 186

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIE 318
            D++LW S++  Y  +G + EV++L+  M+  G   P E+ + +V++AC  +G+ K G  
Sbjct: 187 LDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGA- 245

Query: 319 YFEWMVHDYKLEPGPEH---YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
               MVH   ++ G E    ++ LV    + G L  A +L  E + R      V  W A+
Sbjct: 246 ----MVHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLF-ERISR----KDVVSWNAM 296

Query: 376 LSACHDCGKFELGKLAAQKALELDP 400
           ++A    G+ E      ++ L+++P
Sbjct: 297 IAANEQRGEGENALGLFRRMLKVEP 321



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 165/366 (45%), Gaps = 25/366 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + ++ +I+ + R G+   A   F  M   G+  + ++L S L  S S  +    +Q+
Sbjct: 84  RDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQL 143

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGYCEAK 166
                ++G+     + +A I +Y++  ++ DA+ +FDE  +   + +  N++++ Y    
Sbjct: 144 HGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHG 203

Query: 167 LWAGGLELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            W   L L   M ++G +     T ++++ AC      ++G  VH  +I+      N   
Sbjct: 204 CWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATN--- 260

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +SL+  YGKCG +  A Q+F       E    KDVV W +M+    + G  +  + L+
Sbjct: 261 LWNSLVTFYGKCGNLQHASQLF-------ERISRKDVVSWNAMIAANEQRGEGENALGLF 313

Query: 286 EAMLM--NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
             ML      +P+ V F++++SA S    ++ G E     +    LE      + L+   
Sbjct: 314 RRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGRE-IHAHIFRLSLEVDTSITNSLITFY 372

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK----FELGKLAAQKALELD 399
            +  E+ KA ++   +L R      +  W ++L+      +    F++ K      +E D
Sbjct: 373 SKCREVGKAREIFERLLLR-----DIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPD 427

Query: 400 PHNVGI 405
            H++ I
Sbjct: 428 SHSLTI 433


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/433 (33%), Positives = 223/433 (51%), Gaps = 47/433 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I+ + +NG    AL  F  M   G F D   L S ++A   +   R G+QV
Sbjct: 215 RNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQV 274

Query: 109 QAHVTKSGWLSSVFV-GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC---- 163
            AH+ K   L    V  +AL+D+YAK     +A  +FD +P ++ V   ++L+GY     
Sbjct: 275 HAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSAN 334

Query: 164 ------------EAKLWAGGL------------ELVRLMPALGLDY---DHFTLSALLRA 196
                       E  + A  +            E +RL   L  D     H+T   +L A
Sbjct: 335 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNA 394

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLG----NDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           C  ++  + G+Q H +++++         +DVF+ +SL++MY K G +    +VF     
Sbjct: 395 CGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVF----- 449

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
             E    +D V W +M+  Y +NG  K+ + L+E ML +   PD V  + V+SAC H+G 
Sbjct: 450 --ERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGL 507

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           V  G  +F +M  D+ + P  +HY+C+VDLL RAG L +A +LI +M        SV +W
Sbjct: 508 VDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTE---PDSV-LW 563

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
            +LL AC      ELG+  A +  ELDP N G YV+LSN+YA+   W ++ ++R  MK++
Sbjct: 564 ASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDR 623

Query: 433 GLKKDVGCSWIEV 445
           G+ K  GCSWIE+
Sbjct: 624 GVSKQPGCSWIEI 636



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 177/354 (50%), Gaps = 37/354 (10%)

Query: 54  FNVVISDFCRNGSPLY--ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           +N V++   R+G      AL+  + MH     L+ Y+  S+L+A  + KD R G+QV   
Sbjct: 117 YNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGL 176

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V +S     V +G+AL+D+YAK     DA  +FD +P +N V  N+L++ Y +       
Sbjct: 177 VARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEA 236

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L L   M A G   D  TLS+++ ACAGL+A   GRQVHA+M+++   L +D+ + ++L+
Sbjct: 237 LVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKR-DRLRDDMVLNNALV 295

Query: 232 EMYGKCGLVTKALQVFN-------------LAGHRLEGE-----------INKDVVLWTS 267
           +MY KCG   +A  +F+             LAG+                + K+V+ W  
Sbjct: 296 DMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNV 355

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHD 326
           ++  Y +NG  +E I+L+  +  +   P    +  V++AC +   ++LG + +   +   
Sbjct: 356 LIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEG 415

Query: 327 YKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           ++ + GPE      + LVD+  + G +D   K+   M  R + S     W A++
Sbjct: 416 FRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVS-----WNAMI 464



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 143/326 (43%), Gaps = 20/326 (6%)

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKD-ARFGKQVQAHVTKSG 116
           ++D  R+   L   +       HG  L +     +   +T V   AR G+  +A     G
Sbjct: 23  LADLLRSAPSLPGARA-----AHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDG 77

Query: 117 W-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
             L + F  +AL+  YA+L    +A  +F+ IP  +    NA+++          G + +
Sbjct: 78  IPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAG-DAL 136

Query: 176 RLMPALGLD---YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           R + A+  D    + ++ ++ L ACA       G QVH  + R      +DV + ++L++
Sbjct: 137 RFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARS--PHADDVHIGTALVD 194

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY KC     A +VF+    R       +VV W S++  Y +NG   E + L+  M+  G
Sbjct: 195 MYAKCERPVDARRVFDAMPER-------NVVSWNSLITCYEQNGPVGEALVLFVEMMATG 247

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
             PDEV   +V+SAC+     + G +    MV   +L       + LVD+  + G   +A
Sbjct: 248 FFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEA 307

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSA 378
             + + M  R   S +  + G   SA
Sbjct: 308 RCIFDSMPSRSVVSETSILAGYAKSA 333


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 219/401 (54%), Gaps = 14/401 (3%)

Query: 48  PRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           P+  L P++++I+ + ++     AL  F  M    +  + +   S L A  S      GK
Sbjct: 299 PKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGK 358

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+ + V K G  S+VFV +A++D+YAK   I ++  +F+E+P +N V  N ++ GY +  
Sbjct: 359 QIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLG 418

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                + L   M    +     T S++LRA A L+A E G Q+H+  I+   N   D  +
Sbjct: 419 DGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYN--KDTVV 476

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +SLI+MY KCG +  A   F+    R       D V W +M+  Y  +G   E + L++
Sbjct: 477 ANSLIDMYAKCGRINDARLTFDKMNKR-------DEVSWNAMICGYSMHGMSMEALNLFD 529

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M     KP+++ FV V+SACS+ G +  G  +FE M  DY ++P  EHY+C+V LL R 
Sbjct: 530 MMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRL 589

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G  D+A KLI E+  +     SV +W ALL AC    K +LG++ AQ  LE++PH+   +
Sbjct: 590 GRFDEAMKLIGEIAYQ----PSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATH 645

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           V+LSN+YA    WD +  +R+ M++K ++K+ G SW+E  G
Sbjct: 646 VLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQG 686



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 165/363 (45%), Gaps = 15/363 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           ++H H  + G     L +F   ++L +       +L   +     +   N + F  +   
Sbjct: 56  HLHCHILKRG---TSLDLFAQNILLNFYV--QSNSLQDASKLFDEMPQTNTISFVTLAQG 110

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + R+     AL     +   G  ++ +   + L    S+  A     + A V K G  + 
Sbjct: 111 YSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHAD 170

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            FVG+ALID Y+    +  A  +FD+I  K+ V    +++ Y E   +   L+L   M  
Sbjct: 171 AFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRI 230

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
           +G   ++FT+S  L++C GL A   G+ VH   ++ C +  +D+F+  +L+E+Y K G +
Sbjct: 231 MGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYD--HDLFVGIALLELYAKSGEI 288

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A ++F       E     D++ W+ M+  Y ++   KE + L+  M      P+   F
Sbjct: 289 IDAQRLF-------EEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTF 341

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
            +V+ AC+ +  + LG +    ++  + L       + ++D+  + GE++ + KL  E+ 
Sbjct: 342 ASVLQACASSVSLDLGKQIHSCVL-KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP 400

Query: 361 DRG 363
           DR 
Sbjct: 401 DRN 403



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 157/307 (51%), Gaps = 15/307 (4%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           +L+ F+ M + G   + + +  +L +   ++    GK V     K  +   +FVG AL++
Sbjct: 221 SLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLE 280

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           LYAK   I DA+ +F+E+P  + +  + +++ Y ++      L+L   M    +  ++FT
Sbjct: 281 LYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFT 340

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
            +++L+ACA   + + G+Q+H+ +++    L ++VF+ ++++++Y KCG +  ++++F  
Sbjct: 341 FASVLQACASSVSLDLGKQIHSCVLK--FGLNSNVFVSNAIMDVYAKCGEIENSMKLF-- 396

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                E   +++ V W +++  Y + G  +  + L+  ML +  +P EV + +V+ A + 
Sbjct: 397 -----EELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASAS 451

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
              ++ G++     +     +      S L+D+  + G ++ A    ++M  R   S   
Sbjct: 452 LAALEPGLQIHSLTIKTMYNKDTVVANS-LIDMYAKCGRINDARLTFDKMNKRDEVS--- 507

Query: 370 SMWGALL 376
             W A++
Sbjct: 508 --WNAMI 512



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 26/267 (9%)

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           D   GK +  H+ K G    +F  + L++ Y +   + DA  +FDE+P  N++    L  
Sbjct: 50  DPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQ 109

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY     +   L  +  +   G + + F  + LL+    +  A     +HA + +    L
Sbjct: 110 GYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYK----L 165

Query: 221 GN--DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           G+  D F+ ++LI+ Y   G V       ++A H  +    KD+V WT M+  Y  N ++
Sbjct: 166 GHHADAFVGTALIDAYSVRGNV-------DVARHVFDDICCKDMVSWTGMVACYAENCFY 218

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW--MVHDYKLEPGPEHY 336
           +E ++L+  M + G KP+       + +C       LG+E F     VH   L+   +H 
Sbjct: 219 EESLQLFNQMRIMGYKPNNFTISGALKSC-------LGLEAFNVGKSVHGCALKGCYDHD 271

Query: 337 ----SCLVDLLCRAGELDKAWKLINEM 359
                 L++L  ++GE+  A +L  EM
Sbjct: 272 LFVGIALLELYAKSGEIIDAQRLFEEM 298



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 114/264 (43%), Gaps = 30/264 (11%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKT 73
           +   + +M  Y  C      G + N +K    L  RN + +N +I  + + G    A+  
Sbjct: 373 VFVSNAIMDVYAKC------GEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNL 426

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F+ M  H +        S L AS S+     G Q+ +   K+ +     V ++LID+YAK
Sbjct: 427 FTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAK 486

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              I+DA L FD++  ++ V  NA++ GY    +    L L  +M       +  T   +
Sbjct: 487 CGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGV 546

Query: 194 LRAC--AGL---SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           L AC  AGL     A F      Y I+ C      +   + ++ + G+ G   +A+    
Sbjct: 547 LSACSNAGLLYKGQAHFESMSKDYDIKPC------IEHYTCMVWLLGRLGRFDEAM---- 596

Query: 249 LAGHRLEGEI--NKDVVLWTSMLG 270
               +L GEI     V++W ++LG
Sbjct: 597 ----KLIGEIAYQPSVMVWRALLG 616


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 140/397 (35%), Positives = 221/397 (55%), Gaps = 15/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I  F +N   LY      F  V  +  D  ++ S L+A   + +  FGKQV
Sbjct: 264 RNLVSWNSMIVGFVKN--KLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQV 321

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G +  V+V ++L+D+Y K  L  DA  +F     ++ V  N ++ G    + +
Sbjct: 322 HGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNF 381

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                  + M   G++ D  + S+L  A A ++A   G  +H++++ K  ++ N   + S
Sbjct: 382 EQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVL-KTGHVKNSR-ISS 439

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL+ MYGKCG +  A QVF     R   E N  VV WT+M+ V+ ++G   E IKL+E M
Sbjct: 440 SLVTMYGKCGSMLDAYQVF-----RETKEHN--VVCWTAMITVFHQHGCANEAIKLFEEM 492

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  G  P+ + FV+V+SACSHTG++  G +YF  M + + ++PG EHY+C+VDLL R G 
Sbjct: 493 LNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGR 552

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A + I  M           +WGALL AC      E+G+  A++  +L+P N G Y++
Sbjct: 553 LEEACRFIESM----PFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYML 608

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+Y +  M +E  ++R LM   G++K+ GCSWI+V
Sbjct: 609 LSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDV 645



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 185/370 (50%), Gaps = 36/370 (9%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLN-----PRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           L+L Y  C      G++ + L   N       N + +  +I+   R+  P  AL  F+ M
Sbjct: 138 LLLLYAKC------GSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRM 191

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
              GI+ + +   + L A         G+Q+ A + K  +L+  FV +AL+D+YAK   +
Sbjct: 192 RTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSM 251

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
             AE +FDE+P +N V  N+++ G+ + KL+   + + R + +LG   D  ++S++L AC
Sbjct: 252 LLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSAC 309

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           AGL   +FG+QVH  ++++   L   V++++SL++MY KCGL   A ++F   G R    
Sbjct: 310 AGLVELDFGKQVHGSIVKR--GLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDR---- 363

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              DVV W  M+    R   F++    ++AM+  G +PDE ++ ++  A +    +  G 
Sbjct: 364 ---DVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGT 420

Query: 318 EYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
                M+H + L+ G        S LV +  + G +  A+++  E  +      +V  W 
Sbjct: 421 -----MIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEH-----NVVCWT 470

Query: 374 ALLSACHDCG 383
           A+++  H  G
Sbjct: 471 AMITVFHQHG 480



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 142/300 (47%), Gaps = 27/300 (9%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI--PVK 150
           L  +  +K  +   Q+ + +  +   +S+   + L+ LYAK   IH   L+F+    P  
Sbjct: 104 LNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPST 163

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N V    L++    +      L     M   G+  +HFT SA+L ACA  +    G+Q+H
Sbjct: 164 NVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIH 223

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           A +I K C L ND F+ ++L++MY KCG +  A  VF+   HR       ++V W SM+ 
Sbjct: 224 A-LIHKHCFL-NDPFVATALLDMYAKCGSMLLAENVFDEMPHR-------NLVSWNSMIV 274

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            + +N  +   I ++  +L  G  PD+V+  +V+SAC+  G V+L    F   VH   ++
Sbjct: 275 GFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACA--GLVELD---FGKQVHGSIVK 327

Query: 331 PGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            G        + LVD+ C+ G  + A KL       G G   V  W  ++  C  C  FE
Sbjct: 328 RGLVGLVYVKNSLVDMYCKCGLFEDATKLFC-----GGGDRDVVTWNVMIMGCFRCRNFE 382


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/394 (32%), Positives = 214/394 (54%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I  + ++  P  +L     M   G+  D + +CS L+A + +K  R GK+V   + 
Sbjct: 448 WNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFII 507

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           ++     +FV  +++ LY     +   +++FD +   + V  N +++G+ +       L 
Sbjct: 508 RNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALG 567

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R M   G+     ++  +  AC+ L +   GR+ HAY ++    L ++ F+  S+I+M
Sbjct: 568 LFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHL--LEDNAFIACSIIDM 625

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G +T++ +VFN       G   K    W +M+  YG +G  KE IKL+E M   G 
Sbjct: 626 YAKNGAITQSSKVFN-------GLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGR 678

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            PD++ F+ V++AC+H+G +  G+ Y + M   + L+P  +HY+C++D+L RAG+LD A 
Sbjct: 679 NPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNAL 738

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           ++  EM +       V +W +LLS C      E+G+  A K   L+P     YV+LSNLY
Sbjct: 739 RVAAEMSEE----PDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLY 794

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A    WD++ Q+R+ MKE  L+KD GCSWIE+ G
Sbjct: 795 AGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNG 828



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 128/286 (44%), Gaps = 29/286 (10%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSS-----LTASTSVK 100
           N  N   F   IS+FC  G    + +    F        D + L        L AS   K
Sbjct: 39  NSTNANHFLRRISNFCETGDLDKSFRVVQEFAGDDESSSDVFLLVREALGLLLQASGKRK 98

Query: 101 DARFGKQVQAHVTKSGWLSSVFV-GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           D   G+++   V+ S  L S  V  + +I +YA      D+   FD +  KN    NA++
Sbjct: 99  DIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVI 158

Query: 160 SGYCEAKLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           S Y   +L+   LE+ ++++    L  D+FT   +++ACAG+S    G  VH  +++   
Sbjct: 159 SSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVK--T 216

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
            L  D+F+ ++L+  YG  G V+ AL++F++   R       ++V W SM+ V+  NG  
Sbjct: 217 GLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPER-------NLVSWNSMIRVFSDNG-- 267

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
                  +   M    PD    VTV+  C+   ++ +G     W V
Sbjct: 268 ------DDGAFM----PDVATVVTVLPVCAREREIGVGKGVHGWAV 303



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 125/290 (43%), Gaps = 27/290 (9%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           +R++  Y  C    +  +  + L+    +N   +N VIS + RN      L+ F  M   
Sbjct: 124 TRIITMYAMCGSPDDSRSAFDALR---SKNLFQWNAVISSYSRNELYHEVLEMFIKMISK 180

Query: 81  GIFL-DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
              L D +     + A   + D   G  V   V K+G +  +FVG+AL+  Y     + D
Sbjct: 181 THLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSD 240

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD +P +N V  N+++      ++++   +    MP      D  T+  +L  CA 
Sbjct: 241 ALKLFDIMPERNLVSWNSMI------RVFSDNGDDGAFMP------DVATVVTVLPVCAR 288

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
                 G+ VH + ++   +L  ++ + ++L++MY K G +  +  +F L         N
Sbjct: 289 EREIGVGKGVHGWAVK--LSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNN-------N 339

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKPDEVAFVTVISAC 307
           K+VV W +M+G +   G       L   ML      K DEV  +  +  C
Sbjct: 340 KNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 151/348 (43%), Gaps = 34/348 (9%)

Query: 37  GTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCSS 92
           G +++ LK  +    RN + +N +I  F  NG               G F+ D   + + 
Sbjct: 236 GFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDD-------------GAFMPDVATVVTV 282

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L      ++   GK V     K      + V +AL+D+Y+K   I D++++F     KN 
Sbjct: 283 LPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNV 342

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAEFGRQVH 210
           V  N ++ G+       G  +L+R M A   D   D  T+   +  C   S     +++H
Sbjct: 343 VSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELH 402

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            Y +++      D  + ++ +  Y KCG ++ A +VF+       G  +K +  W +++G
Sbjct: 403 CYSLKQ--EFVYDELLANAFVASYAKCGSLSYAQRVFH-------GIRSKTLNSWNALIG 453

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y ++   +  +  +  M  +G  PD     +++SACS    ++LG E   +++ ++ LE
Sbjct: 454 GYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNW-LE 512

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
                Y  ++ L    GEL     L + M D     +S+  W  +++ 
Sbjct: 513 RDLFVYLSVLSLYIHCGELCTVQVLFDAMED-----NSLVSWNTVITG 555



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 7/218 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N VI+   +NG P  AL  F  M ++GI     ++ +   A + +   R G++  A+
Sbjct: 547 VSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAY 606

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
             K     + F+  ++ID+YAK   I  +  +F+ +  K++   NA++ GY         
Sbjct: 607 ALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEA 666

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           ++L   M   G + D  T   +L AC        G +    M +    L  ++   + +I
Sbjct: 667 IKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQM-KSSFGLKPNLKHYACVI 725

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           +M G+ G +  AL+V        E     DV +W S+L
Sbjct: 726 DMLGRAGQLDNALRV------AAEMSEEPDVGIWNSLL 757


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 220/400 (55%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ +  + +N ++  + +NG P  A+  F  M   GI      +  +L A   + D   G
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V   V +    S + V ++LI +Y+K   +  A  +F+ +  +  V  NA++ GY + 
Sbjct: 369 KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQN 428

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              +  L     M +LG+  D FT+ +++ A A LS     + +H  +IR C  L  ++F
Sbjct: 429 GRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC--LDKNIF 486

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L++MY KCG +  A ++F++   R        V+ W +M+  YG +G  +  + L+
Sbjct: 487 VTTALVDMYSKCGAIHMARKLFDMISDR-------HVITWNAMIDGYGTHGLGRAALDLF 539

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + M     +P+++ +++VISACSH+G V  G+ +F+ M  DY LEP  +HY  +VDLL R
Sbjct: 540 DKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGR 599

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG + +AW  I  M      S  ++++GA+L AC      E+G+ AA+K  EL+P   G 
Sbjct: 600 AGRIKEAWDFIENM----PISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGY 655

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +V+L+N+YA    W ++ ++R+ M++KGLKK  GCS +E+
Sbjct: 656 HVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVEL 695



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 172/386 (44%), Gaps = 20/386 (5%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  CR    +         +  R+ + +N +I+ F +NG    AL+    M   G   D+
Sbjct: 192 YAKCRQ---IDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDS 248

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
             L + L A+  V     GK +  +  ++G+   V + +AL D+Y+K   +  A L+FD 
Sbjct: 249 ITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDG 308

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +  K  V  N+++ GY +       + +   M   G+D    T+   L ACA L   E G
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           + VH ++ +   NLG+D+ + +SLI MY KC  V  A  +FN     L G  +   V W 
Sbjct: 369 KFVHKFVDQ--LNLGSDISVMNSLISMYSKCKRVDIASDIFN----NLNGRTH---VSWN 419

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +M+  Y +NG   E +  +  M   G KPD    V+VI A +    V    ++   ++  
Sbjct: 420 AMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAEL-SVTRHAKWIHGLIIR 478

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGK 384
             L+      + LVD+  + G +  A KL + + DR      V  W A++     H  G+
Sbjct: 479 SCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDR-----HVITWNAMIDGYGTHGLGR 533

Query: 385 FELGKLAAQKALELDPHNVGIYVMLS 410
             L      K   ++P+++    ++S
Sbjct: 534 AALDLFDKMKKGAVEPNDITYLSVIS 559



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 153/349 (43%), Gaps = 17/349 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           ++ ++  + +N S   AL     M    +    Y     L       D + GK++   + 
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            + + ++VF  + ++++YAK   I DA  MFD +P ++ V  N +++G+ +       LE
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE 234

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           LV  M   G   D  TL  +L A A +     G+ +H Y IR        V + ++L +M
Sbjct: 235 LVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIR--AGFAKLVNISTALADM 292

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V  A  +F       +G   K VV W SM+  Y +NG  ++ I ++E ML  G 
Sbjct: 293 YSKCGSVETARLIF-------DGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            P  V  +  + AC+  G ++ G ++    V    L       + L+ +  +   +D A 
Sbjct: 346 DPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIAS 404

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDP 400
            + N +  R H S     W A++      G+    L   +  K+L + P
Sbjct: 405 DIFNNLNGRTHVS-----WNAMILGYAQNGRVSEALNCFSEMKSLGMKP 448



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 5   HQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRN 64
           H+F   L L   I   + L+  Y+ C   K +   ++    LN R  + +N +I  + +N
Sbjct: 372 HKFVDQLNLGSDISVMNSLISMYSKC---KRVDIASDIFNNLNGRTHVSWNAMILGYAQN 428

Query: 65  GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG 124
           G    AL  FS M   G+  D++ + S + A   +   R  K +   + +S    ++FV 
Sbjct: 429 GRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVT 488

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           +AL+D+Y+K   IH A  +FD I  ++ +  NA++ GY    L    L+L   M    ++
Sbjct: 489 TALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVE 548

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
            +  T  +++ AC+     + G + H   +++   L   +    +++++ G+ G + +A
Sbjct: 549 PNDITYLSVISACSHSGLVDEGLR-HFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEA 606


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/407 (32%), Positives = 229/407 (56%), Gaps = 14/407 (3%)

Query: 39  LTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTS 98
           + +  +++  ++ + +  +I+ + +N   L AL     + +  + +D   + S L A + 
Sbjct: 406 MGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSG 465

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           +K  +  K++  +V K G L+ + + +A++++Y +L L+  A  +F+ I  K+ V   ++
Sbjct: 466 LKSEKLIKEIHGYVLKGG-LADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSM 524

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           ++      L    LEL   +    ++ D  TL ++L A A LS+ + G+++H ++IRK  
Sbjct: 525 ITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGF 584

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
            L  +  + +SL++MY +CG +  A  +FN    R       D++LWTSM+   G +G  
Sbjct: 585 FL--EGLIANSLVDMYARCGTMENARNIFNYVKQR-------DLILWTSMINANGMHGCG 635

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           K+ I L+  M      PD + F+ ++ ACSH+G V  G ++FE M ++YKLEP PEHY+C
Sbjct: 636 KDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYAC 695

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           LVDLL R+  L++A+  +  M        S  +W ALL AC      +LG++AA+K L+L
Sbjct: 696 LVDLLARSNSLEEAYHFVRNMPIE----PSAEVWCALLGACRIHSNNDLGEVAAKKLLQL 751

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +  N G YV++SN +A    W+++ ++R +MK   LKK  GCSWIEV
Sbjct: 752 NTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEV 798



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 162/337 (48%), Gaps = 26/337 (7%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVV 57
            +HAH  +T   L   +   ++ +  Y  C      G+  + +K    ++ R    +N +
Sbjct: 67  QLHAHFLKTQNYLDS-VFLDTKFVHMYGKC------GSFYDAVKVFDKMSERTIFTWNAM 119

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I      G  + A++ +  M V G+ LD +     L A  + K+ R G ++     K G+
Sbjct: 120 IGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGY 179

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDE--IPVKNSVCANALLSGYCEAKLWAGGLELV 175
              VFV +ALI +YAK   +  A ++FD   +   + V  N+++S +         L L 
Sbjct: 180 GGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLF 239

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           R M  +G++ + +T  + L+AC G +  + GR +HA +++   N   DV++ ++LI MY 
Sbjct: 240 RRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKS--NHFTDVYVSNALIAMYA 297

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
            CG +  A +VF       +  + KD V W ++L    +N  + + I  ++ M  +G KP
Sbjct: 298 NCGQMEDAERVF-------KSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKP 350

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           D+V+ + +I+A   +  +  G+E     VH Y ++ G
Sbjct: 351 DQVSVLNMIAASGRSANLLAGME-----VHAYAIKHG 382



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 14/283 (4%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           +P+ +N +IS     G  L AL  F  M   G+  +TY   S+L A       + G+ + 
Sbjct: 215 DPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIH 274

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           A + KS   + V+V +ALI +YA    + DAE +F  +  K+ V  N LLSG  +  +++
Sbjct: 275 AVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYS 334

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             +   + M   G   D  ++  ++ A    +    G +VHAY I+    + +++ + +S
Sbjct: 335 DAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKH--GIDSNMHIGNS 392

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           LI+MYGKC  V          G   E    KD++ WT+++  Y +N    + + L   + 
Sbjct: 393 LIDMYGKCCCV-------KYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQ 445

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           +     D +   +++ ACS     KL  E     +H Y L+ G
Sbjct: 446 LEKMDVDPMMIGSILLACSGLKSEKLIKE-----IHGYVLKGG 483



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 104/214 (48%), Gaps = 10/214 (4%)

Query: 105 GKQVQAHVTKS-GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           G+Q+ AH  K+  +L SVF+ +  + +Y K    +DA  +FD++  +     NA++    
Sbjct: 65  GQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACV 124

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
            A  +   +EL + M  LG+  D FT   +L+AC        G ++H   ++  C  G  
Sbjct: 125 SAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVK--CGYGGF 182

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVI 282
           VF+ ++LI MY KCG +  A  +F+       G + K D V W S++  +   G   E +
Sbjct: 183 VFVCNALIAMYAKCGDLGGARVLFD------SGLMEKDDPVSWNSIISAHVGEGESLEAL 236

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            L+  M   G + +   FV+ + AC     +K+G
Sbjct: 237 SLFRRMQEVGVESNTYTFVSALQACEGPTFIKIG 270


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/412 (31%), Positives = 218/412 (52%), Gaps = 14/412 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G      + ++ RN + +N ++S +  +G    A+  F+ M   G+ +D Y + S + A
Sbjct: 173 MGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPA 232

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
           S SV   + G  +   + ++G+ +   + +AL+D+Y     + DA  +F E+ VK+    
Sbjct: 233 SLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAW 292

Query: 156 NALLSGYCEAKLWAGGLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
             +L+G+   + W   ++   +++    L  D   L  +L +C+   A + GR+VHA  I
Sbjct: 293 TLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAI 352

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           + C    N++F+ S++I+MY  CG +  A + F   G        KDVV W +M+   G 
Sbjct: 353 KTC--FANNIFVGSAVIDMYANCGNLEDAKRFFYGMGE-------KDVVCWNAMIAGNGM 403

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           NGY  + I L+  M  +G  PDE  FV+V+ ACSH G V  G++ F  MV    + P  +
Sbjct: 404 NGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQ 463

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
           HY+C++D+L RAG+LD A+  IN M  +        ++  LL AC   G  +LG   +QK
Sbjct: 464 HYACVIDILGRAGQLDAAYSFINNMPFQ----PDFDVYSTLLGACRIHGNIKLGHEISQK 519

Query: 395 ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
             E++P++ G YV+LSN+YA    W+ +   R  ++ K +KKD G S IE+ 
Sbjct: 520 IFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEIN 571



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 158/336 (47%), Gaps = 26/336 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + + ++IS   +N   + A+  F  M +     +   + S L A  ++   R  K V
Sbjct: 85  KNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSV 144

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                + G+  +VFV +AL+D+Y+K   +  A  +F+ +  +N V  NA++SGY +    
Sbjct: 145 HCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFS 204

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              ++L  LM   GL  D +T+ +L+ A   +   + G  +H ++IR      ND  +++
Sbjct: 205 EEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIR--TGYENDKHIKT 262

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +L+++Y     V  A        HR+  E++ KDV  WT ML  +    ++   IK +  
Sbjct: 263 ALMDIYVSHNCVDDA--------HRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNK 314

Query: 288 ML-MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDL 342
           ML +   K D +A + ++S+CSH+G ++ G       VH   ++    +     S ++D+
Sbjct: 315 MLGIQNLKLDSIALMGILSSCSHSGALQQGRR-----VHALAIKTCFANNIFVGSAVIDM 369

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
               G L+ A +        G G   V  W A+++ 
Sbjct: 370 YANCGNLEDAKRFF-----YGMGEKDVVCWNAMIAG 400



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 134/284 (47%), Gaps = 23/284 (8%)

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           +KD +  +Q+ A +  SG   + F+ ++L++ Y    L+ DA+ +F   P KN V    L
Sbjct: 34  LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTIL 93

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           +SG  +   +   +++ R M       +  T+S++L A A L      + VH + +R   
Sbjct: 94  ISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRG-- 151

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
               +VF++++L++MY K G +  A Q+F       E    ++VV W +++  Y  +G+ 
Sbjct: 152 GFEGNVFVETALVDMYSKFGCMGVARQLF-------ESMSERNVVTWNAIVSGYSDHGFS 204

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH--- 335
           +E I L+  M   G   D    +++I A    G +++G       +H + +  G E+   
Sbjct: 205 EEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTG-----IHGFIIRTGYENDKH 259

Query: 336 -YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
             + L+D+      +D A ++ +EM         V+ W  +L+ 
Sbjct: 260 IKTALMDIYVSHNCVDDAHRVFSEM-----SVKDVAAWTLMLTG 298


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 146/447 (32%), Positives = 241/447 (53%), Gaps = 20/447 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VH H  +T  L    +  ++RL++ Y  C     LG        +  RN + +  +IS 
Sbjct: 83  RVHTHMIKTCYLPS--VYLRTRLIVLYNKC---DCLGDARGMFDEMPQRNVVSWTAMISA 137

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + + G    AL  F  M       + +   + LT+         G+Q+ +   K  + S 
Sbjct: 138 YSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESH 197

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +FVGS+L+D+YAK   I DA  +F  +P ++ V   A++SGY +  L    L+L R +  
Sbjct: 198 MFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQI 257

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G++ +  T +++L A +GL+A   G+QVH++++R      + V + +SLI+MY KCG V
Sbjct: 258 EGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRS--GQYSYVVLLNSLIDMYSKCGNV 315

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKPDEVA 299
             A ++F+    R         + W +ML  Y ++G  +EV++L++ M   N  KPD + 
Sbjct: 316 CYARRIFDSMPER-------TCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSIT 368

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYK-LEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           ++ V+S CSH     +G+E F  MV+    +EP   HY C+VDLL RAG +++A+  I +
Sbjct: 369 YLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKK 428

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M        + ++WG+LL +C      E+G +  QK LEL+P N G YV+LSNLYA    
Sbjct: 429 M----PFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGK 484

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEV 445
           W+++  +R+LM+EK + K+ G SW+E+
Sbjct: 485 WEDMRNIRDLMQEKAVTKEPGRSWVEL 511



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 144/290 (49%), Gaps = 23/290 (7%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S L    S +  R G++V  H+ K+ +L SV++ + LI LY K   + DA  MFDE+P +
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQR 126

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N V   A++S Y +       L L   M     + +HFT + +L +C G    E GRQ+H
Sbjct: 127 NVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIH 186

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           +  I++  N  + +F+ SSL++MY K G +  A  VF+    R       DVV  T+++ 
Sbjct: 187 SIAIKR--NYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPER-------DVVACTAIIS 237

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y + G  +E +KL+  + + G   + V + +V++A S    +  G +     VH + L 
Sbjct: 238 GYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQ-----VHSHVLR 292

Query: 331 PGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            G   Y    + L+D+  + G +  A ++ + M +R     +   W A+L
Sbjct: 293 SGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER-----TCISWNAML 337



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M  LG +       ++L  C    A   G++VH +MI+ C      V++++ LI +Y KC
Sbjct: 53  MAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTC--YLPSVYLRTRLIVLYNKC 110

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
             +  A  +F+    R       +VV WT+M+  Y + G+  E + L+  ML + T+P+ 
Sbjct: 111 DCLGDARGMFDEMPQR-------NVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNH 163

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGEL 349
             F T++++C  +    LG E     +H   ++   E +    S L+D+  ++G +
Sbjct: 164 FTFATILTSCYGS----LGFETGR-QIHSIAIKRNYESHMFVGSSLLDMYAKSGRI 214


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/400 (34%), Positives = 220/400 (55%), Gaps = 16/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I  + ++     AL  F  M   G+ +D + L S LTA T ++D   G Q 
Sbjct: 203 RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQF 262

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSGYCE-AK 166
              + K+G+  +  VGS LIDLY+K    + D   +F+EI   + V  N ++SGY +  +
Sbjct: 263 HGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEE 322

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                LE  R M  +G   +  +   ++ AC+ LS+   G+Q+H+  ++      N + +
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIP-SNRISV 381

Query: 227 QSSLIEMYGKCGLVTKALQVFN-LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
            ++LI MY KCG +  A ++F+ +A H        + V   SM+  Y ++G   E + L+
Sbjct: 382 DNALIAMYSKCGNLQDARRLFDRMAEH--------NTVSLNSMIAGYAQHGIEMESLHLF 433

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + ML     P  + F++V+SAC+HTG+V+ G  YF  M   + +EP  EHYSC++DLL R
Sbjct: 434 QWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGR 493

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG+L +A  LI  M        S+  W +LL AC   G  EL   AA + L+L+P N   
Sbjct: 494 AGKLSEAENLIARM---PFNPGSIG-WASLLGACRTHGNIELAVKAANQVLQLEPSNAAP 549

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           YV+LSN+YA    W+E+  +R+ M+++G+KK  GCSWIEV
Sbjct: 550 YVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEV 589



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 152/318 (47%), Gaps = 24/318 (7%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +IS +   G    AL  FS M   G+ +D + L + +TA     D     Q+ + 
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITAC--CDDVGLIGQLHSV 163

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVCANALLSGYCEAKLWAG 170
              SG+ S V V +AL+  Y K   + DA+ +F  +  +++ V  N+++  Y + +  + 
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSK 223

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            L L + M   GL+ D FTL+++L A   L     G Q H  +I+       +  + S L
Sbjct: 224 ALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT--GFHQNSHVGSGL 281

Query: 231 IEMYGKC-GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF-KEVIKLYEAM 288
           I++Y KC G ++   +VF       E     D+VLW +M+  Y +N  F ++ ++ +  M
Sbjct: 282 IDLYSKCGGGMSDCRKVF-------EEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQM 334

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHY----SCLVDLL 343
              G +P++ +FV VISACS+      G +     +H   L+   P +     + L+ + 
Sbjct: 335 QGIGYRPNDCSFVCVISACSNLSSPSQGKQ-----IHSLALKSDIPSNRISVDNALIAMY 389

Query: 344 CRAGELDKAWKLINEMLD 361
            + G L  A +L + M +
Sbjct: 390 SKCGNLQDARRLFDRMAE 407



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 18/204 (8%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           +VF  +A+I  YAK      A  +FD+IP  + V  N L+S Y +    A  L L   M 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 180 ALGLDYDHFTLSALLRAC---AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            +GLD D FTLSA++ AC    GL       Q+H+  +       + V + ++L+  YGK
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGLIG-----QLHSVAVSS--GFDSYVSVNNALLTYYGK 185

Query: 237 CGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
            G +  A +VF  + G R       D V W SM+  YG++    + + L++ M+  G   
Sbjct: 186 NGDLDDAKRVFYGMGGIR-------DEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 296 DEVAFVTVISACSHTGQVKLGIEY 319
           D     +V++A +    +  G+++
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQF 262


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 220/402 (54%), Gaps = 20/402 (4%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH-VHGIFLDTYALCSSLTASTSVKDA 102
           + L P +P+ +  VIS F RN     AL  F   H  H +  D Y   S LTA  ++   
Sbjct: 222 ELLEP-DPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRL 280

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G+++ A V   G+  +V   S+L+D+Y K   +  ++ +FD +  +NSV  +ALL+ Y
Sbjct: 281 RQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVY 340

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
           C    +   + L R M     + D ++   ++RACAGL+A   G+++H   IRK      
Sbjct: 341 CHNGDYEKAVNLFREMK----EVDLYSFGTVIRACAGLAAVTPGKEIHCQYIRK--GGWR 394

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV ++S+L+++Y KCG +  A +VF+    R       +++ W SM+  + +NG     I
Sbjct: 395 DVIVESALVDLYAKCGCINFAYRVFDRMPTR-------NLITWNSMIHGFAQNGSSGIAI 447

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +++EAM+  G KPD ++F+ ++ ACSHTG V     YF+ M   Y ++PG EHY+C+VDL
Sbjct: 448 QIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCMVDL 507

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC-HDCGKFELGKLAAQKALELDPH 401
           L RAG L++A  LI    +     +  S+W  LL AC   C      +  A+K +EL+P 
Sbjct: 508 LGRAGLLEEAENLI----ENAECRNDSSLWLVLLGACTTTCTNSATAERIAKKLMELEPQ 563

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
               YV L+N+Y     WD+  ++RELMK + LKK  G SW+
Sbjct: 564 CYLSYVHLANVYRAVGRWDDAVKVRELMKNRQLKKMPGQSWM 605



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 181/358 (50%), Gaps = 28/358 (7%)

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF--GKQVQAHVTKS 115
           I  FC++G    AL   + + ++   ++   L +SL   T +K   F  G+Q  AHV KS
Sbjct: 31  ILQFCKSGLLNDALHLLNSIDLYDSRINKPLLYASLL-QTCIKVDSFTRGRQFHAHVVKS 89

Query: 116 GWLSSVFVGSALIDLYAKL----LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           G  +  FVG++L+ LY KL    LL      +FD + VK+ V   ++++GY         
Sbjct: 90  GLETDRFVGNSLLSLYFKLGSDSLL---TRRVFDGLFVKDVVSWASMITGYVREGKSGIA 146

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           +EL   M   G++ + FTLSA+++AC+ +     G+  H  ++R+     ++  + SSLI
Sbjct: 147 IELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRR--GFDSNPVILSSLI 204

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK-LYEAMLM 290
           +MYG+  + + A Q+F+         +  D V WT+++  + RN  ++E +   Y     
Sbjct: 205 DMYGRNSVSSDARQLFDEL-------LEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRA 257

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           +   PD   F +V++AC + G+++ G E     V  Y         S LVD+  + G ++
Sbjct: 258 HRLCPDNYTFGSVLTACGNLGRLRQG-EEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVE 316

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSA-CHDCGKFELGKLAAQKALELDPHNVGIYV 407
           K+ +L + M +R    +SVS W ALL+  CH+ G +E      ++  E+D ++ G  +
Sbjct: 317 KSQRLFDRMSNR----NSVS-WSALLAVYCHN-GDYEKAVNLFREMKEVDLYSFGTVI 368



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 151/311 (48%), Gaps = 23/311 (7%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +I+ + R G    A++ F  M   GI  + + L + + A + + +   GK     V + G
Sbjct: 133 MITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRG 192

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           + S+  + S+LID+Y +  +  DA  +FDE+   + VC   ++S +    L+   L    
Sbjct: 193 FDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFY 252

Query: 177 LM-PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           L   A  L  D++T  ++L AC  L     G ++HA +I        +V  +SSL++MYG
Sbjct: 253 LKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVI--AYGFSGNVVTESSLVDMYG 310

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG V K+ ++F+          N++ V W+++L VY  NG +++ + L+  M     + 
Sbjct: 311 KCGAVEKSQRLFDRMS-------NRNSVSWSALLAVYCHNGDYEKAVNLFREM----KEV 359

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDK 351
           D  +F TVI AC+    V  G E     +H   +  G        S LVDL  + G ++ 
Sbjct: 360 DLYSFGTVIRACAGLAAVTPGKE-----IHCQYIRKGGWRDVIVESALVDLYAKCGCINF 414

Query: 352 AWKLINEMLDR 362
           A+++ + M  R
Sbjct: 415 AYRVFDRMPTR 425


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/416 (33%), Positives = 229/416 (55%), Gaps = 13/416 (3%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYAL 89
           R +  +  +      +  R+ + +N VI+ F +NG  + AL     M  +G +  D++ L
Sbjct: 171 RGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTL 230

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
            S L       D   GK++  +  ++G+   VF+GS+LID+YAK   +  +   F  +P 
Sbjct: 231 SSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPR 290

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
           K+++  N++++G  +   +  GL   R M    +     + S+++ ACA L+A   GRQ+
Sbjct: 291 KDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQL 350

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H  ++R      ++ F+ SSL++MY KCG +  A  VF+    R++    +D+V WT+++
Sbjct: 351 HGCIVR--LGFDDNEFIASSLVDMYAKCGNIKMARYVFD----RID---KRDMVAWTAII 401

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
                +G+  + + L+E ML +G +P  VAF+ V++ACSH G V  G  YF  M  D+ +
Sbjct: 402 MGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGI 461

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
            PG EHY+ + DLL RAG L++A+  I+ M  RG   +  S+W  LL+AC      EL +
Sbjct: 462 APGLEHYAAVADLLGRAGRLEEAYDFISNM--RGVQPTG-SVWSILLAACRAHKSVELAE 518

Query: 390 LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
               K L +D  N+G YV++SN+Y+    W +  +LR  M++KGLKK   CSWIEV
Sbjct: 519 KVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEV 574



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 152/329 (46%), Gaps = 37/329 (11%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           +  +F+ M    +  + +   S L AST +K  +    + A   + G  S +++ +ALI+
Sbjct: 94  SFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALIN 153

Query: 130 LYAKLLLIHDA------------------ELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
            YAK    H+A                  + +FD +PV++ V  N +++G+ +  ++   
Sbjct: 154 TYAKF---HNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEA 210

Query: 172 LELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
           L++VR M   G L  D FTLS++L   A       G+++H Y +R       DVF+ SSL
Sbjct: 211 LDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN--GFDGDVFIGSSL 268

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           I+MY KC  +  +L+ F +          KD + W S++    +NG F   +  +  ML 
Sbjct: 269 IDMYAKCNRLECSLRAFYILP-------RKDAISWNSIIAGCVQNGEFDRGLGFFRRMLK 321

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
              KP  V+F +VI AC+H   + LG +    +V     +      S LVD+  + G + 
Sbjct: 322 ENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVR-LGFDDNEFIASSLVDMYAKCGNI- 379

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSAC 379
              K+   + DR      V+ W A++  C
Sbjct: 380 ---KMARYVFDRIDKRDMVA-WTAIIMGC 404


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/400 (34%), Positives = 220/400 (55%), Gaps = 16/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I  + ++     AL  F  M   G+ +D + L S LTA T ++D   G Q 
Sbjct: 203 RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQF 262

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSGYCE-AK 166
              + K+G+  +  VGS LIDLY+K    + D   +F+EI   + V  N ++SGY +  +
Sbjct: 263 HGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEE 322

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                LE  R M  +G   +  +   ++ AC+ LS+   G+Q+H+  ++      N + +
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIP-SNRISV 381

Query: 227 QSSLIEMYGKCGLVTKALQVFN-LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
            ++LI MY KCG +  A ++F+ +A H        + V   SM+  Y ++G   E + L+
Sbjct: 382 DNALIAMYSKCGNLQDARRLFDRMAEH--------NTVSLNSMIAGYAQHGIEMESLHLF 433

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + ML     P  + F++V+SAC+HTG+V+ G  YF  M   + +EP  EHYSC++DLL R
Sbjct: 434 QWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGR 493

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG+L +A  LI  M        S+  W +LL AC   G  EL   AA + L+L+P N   
Sbjct: 494 AGKLSEAENLIARM---PFNPGSIG-WASLLGACRTHGNIELAVKAANQVLQLEPSNAAP 549

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           YV+LSN+YA    W+E+  +R+ M+++G+KK  GCSWIEV
Sbjct: 550 YVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEV 589



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 152/318 (47%), Gaps = 24/318 (7%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +IS +   G    AL  FS M   G+ +D + L + +TA     D     Q+ + 
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITAC--CDDVGLIGQLHSV 163

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVCANALLSGYCEAKLWAG 170
              SG+ S V V +AL+  Y K   + DA+ +F  +  +++ V  N+++  Y + +  + 
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSK 223

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            L L + M   GL+ D FTL+++L A   L     G Q H  +I+       +  + S L
Sbjct: 224 ALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT--GFHQNSHVGSGL 281

Query: 231 IEMYGKC-GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF-KEVIKLYEAM 288
           I++Y KC G ++   +VF       E     D+VLW +M+  Y +N  F ++ ++ +  M
Sbjct: 282 IDLYSKCGGGMSDCRKVF-------EEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQM 334

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-PEHY----SCLVDLL 343
              G +P++ +FV VISACS+      G +     +H   L+   P +     + L+ + 
Sbjct: 335 QGIGYRPNDCSFVCVISACSNLSSPSQGKQ-----IHSLALKSDIPSNRISVDNALIAMY 389

Query: 344 CRAGELDKAWKLINEMLD 361
            + G L  A +L + M +
Sbjct: 390 SKCGNLQDARRLFDRMAE 407



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 18/204 (8%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           +VF  +A+I  YAK      A  +FD+IP  + V  N L+S Y +    A  L L   M 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 180 ALGLDYDHFTLSALLRAC---AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            +GLD D FTLSA++ AC    GL       Q+H+  +       + V + ++L+  YGK
Sbjct: 133 EMGLDMDXFTLSAVITACCDDVGLIG-----QLHSVAVSS--GFDSYVSVNNALLTYYGK 185

Query: 237 CGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
            G +  A +VF  + G R       D V W SM+  YG++    + + L++ M+  G   
Sbjct: 186 NGDLDDAKRVFYGMGGIR-------DEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 296 DEVAFVTVISACSHTGQVKLGIEY 319
           D     +V++A +    +  G+++
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQF 262


>gi|242089513|ref|XP_002440589.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
 gi|241945874|gb|EES19019.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
          Length = 613

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/423 (32%), Positives = 219/423 (51%), Gaps = 17/423 (4%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           L+  Y  C    + G+       +  RN + +  ++S   R      +L  F  M  H +
Sbjct: 170 LITAYFEC---SSPGSAERVFDAMADRNVVTWTAMVSGMARAERYRESLSLFRQMR-HAV 225

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             +  +  SSL A      A  G+Q+   V K+G+ + + V S L+D+Y+K  L+ DA  
Sbjct: 226 DANRASYSSSLLACAGSLAASEGQQIHGLVVKAGFETDLHVESELMDMYSKCGLMEDALR 285

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F      + V    +L G+ +  L     EL   M   G+D D   +SA+L A    + 
Sbjct: 286 VFRSCQDPDEVFLTVILVGFAQNGLEEKAFELFAEMVGKGIDIDANMVSAVLGAFGASAP 345

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G+Q+HA +I+KC   G + ++ + LI MY KCG + ++++VF+       G  +K+ 
Sbjct: 346 FALGKQIHALVIKKC--FGGNTYVCNGLINMYSKCGELQESIEVFD-------GTPSKNT 396

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V W S++  + R+G+  EV  L+E+M  +G KP  V F++++  CSH G    G+E    
Sbjct: 397 VTWNSIIAAFARHGHGSEVFGLFESMKADGVKPTNVTFLSLLHGCSHVGSASKGLEILNS 456

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M   Y + P  EHY+C+VD+L RA +LD A   I +    G    S  +W AL+ AC   
Sbjct: 457 MSSQYGIHPKVEHYACVVDMLGRASQLDDAKAFIED----GPFKDSALLWQALMGACSFH 512

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
              E+GK AA+K L LDP     YV+LSN+Y+    WD+  ++ + M+EKGL+KD G SW
Sbjct: 513 KDSEVGKYAAEKLLLLDPDCTAAYVLLSNIYSSEGRWDDRARILKRMREKGLRKDTGKSW 572

Query: 443 IEV 445
           IE+
Sbjct: 573 IEL 575



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 22/298 (7%)

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G  + V VG+ALI  Y +      AE +FD +  +N V   A++SG   A+ +   L L 
Sbjct: 159 GLDAEVSVGNALITAYFECSSPGSAERVFDAMADRNVVTWTAMVSGMARAERYRESLSLF 218

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           R M    +D +  + S+ L ACAG  AA  G+Q+H  +++       D+ ++S L++MY 
Sbjct: 219 RQMRH-AVDANRASYSSSLLACAGSLAASEGQQIHGLVVK--AGFETDLHVESELMDMYS 275

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCGL+  AL+VF           + D V  T +L  + +NG  ++  +L+  M+  G   
Sbjct: 276 KCGLMEDALRVFRSCQ-------DPDEVFLTVILVGFAQNGLEEKAFELFAEMVGKGIDI 328

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVDLLCRAGELDKAW 353
           D      V+ A   +    LG +    ++   K   G   Y C  L+++  + GEL ++ 
Sbjct: 329 DANMVSAVLGAFGASAPFALGKQIHALVI---KKCFGGNTYVCNGLINMYSKCGELQESI 385

Query: 354 KLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNVGIYVML 409
           ++ +     G  S +   W ++++A   H  G    G   + KA  + P NV    +L
Sbjct: 386 EVFD-----GTPSKNTVTWNSIIAAFARHGHGSEVFGLFESMKADGVKPTNVTFLSLL 438



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 130/309 (42%), Gaps = 19/309 (6%)

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL-ELVRLMPAL 181
           V ++L+ +YA+     DA   FDE+P+++SV  N+LL+    A      L  ++R  P  
Sbjct: 60  VWNSLVAMYARCGRRGDAARAFDEMPLRDSVSWNSLLAASASAADALALLRRMLRAAPGA 119

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQ-----VHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
               DH TL+ +L ACA               VH   +   C L  +V + ++LI  Y +
Sbjct: 120 AA-CDHATLTTVLSACARADGGGGTGAASLPVVHGLAV--SCGLDAEVSVGNALITAYFE 176

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           C     A +VF+    R       +VV WT+M+    R   ++E + L+  M  +    +
Sbjct: 177 CSSPGSAERVFDAMADR-------NVVTWTAMVSGMARAERYRESLSLFRQM-RHAVDAN 228

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
             ++ + + AC+ +     G +    +V     E      S L+D+  + G ++ A ++ 
Sbjct: 229 RASYSSSLLACAGSLAASEG-QQIHGLVVKAGFETDLHVESELMDMYSKCGLMEDALRVF 287

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
               D      +V + G   +   +   FEL      K +++D + V   +      A F
Sbjct: 288 RSCQDPDEVFLTVILVGFAQNGLEE-KAFELFAEMVGKGIDIDANMVSAVLGAFGASAPF 346

Query: 417 CMWDEIGQL 425
            +  +I  L
Sbjct: 347 ALGKQIHAL 355


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/400 (35%), Positives = 218/400 (54%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI-FLDTYALCSSLTASTSVKDARFGKQ 107
           RN + ++ +I  F        A   F  M V G+ FL   ++ S+L    S+ D   G Q
Sbjct: 269 RNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ 328

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + A + KSG  + +   ++L+ +YAK  LI++A + FDEI VK+++   ALLSG  +   
Sbjct: 329 LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGK 388

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                 + + M A  ++ D  T+ +L+ AC+ L+A + G+  H  +I +   L  +  + 
Sbjct: 389 AEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIR--GLALETSIC 446

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +SLI+MY KCG +  + QVF+    R       DVV W +M+  YG +G  KE   L+  
Sbjct: 447 NSLIDMYAKCGKIDLSRQVFDKMPAR-------DVVSWNTMIAGYGIHGLGKEATTLFLG 499

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G  PD+V F+ +I+ACSH+G V  G  +F+ M H Y + P  EHY C+VDLL R G
Sbjct: 500 MKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGG 559

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            LD+A++ I  M  +    + V +WGALL AC      +LGK  ++   +L P   G +V
Sbjct: 560 LLDEAYQFIQSMPLK----ADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFV 615

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+++    +DE  ++R + K KG KK  G SWIE+ G
Sbjct: 616 LLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEING 655



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 167/361 (46%), Gaps = 22/361 (6%)

Query: 49  RNPLP----FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           R P P    +N +I  +   G    A+  +  M    +  + Y     L A +++ D R 
Sbjct: 59  RIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRA 118

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+ + AH   +G  + +FV +ALIDLY +      A  +F ++P+++ V  NA+L+GY  
Sbjct: 119 GRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYAN 178

Query: 165 AKLWAGGL-ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
             ++   +  L+ +    GL  +  TL +LL   A   A   G  +HAY +R C     +
Sbjct: 179 HGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEE 238

Query: 224 -VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            V + ++L++MY KC  +  A +VF+       G   ++ V W++++G +       E  
Sbjct: 239 QVLIGTALLDMYAKCKQLVYACRVFH-------GMPVRNDVTWSALIGGFVLCDRMTEAF 291

Query: 283 KLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
            L++ ML+ G       +  + +  C+    + +G +    ++    +       + L+ 
Sbjct: 292 NLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLS 350

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK--ALELD 399
           +  +AG +++A    +E+  +     ++S +GALLS C   GK E   L  +K  A  ++
Sbjct: 351 MYAKAGLINEATMFFDEIAVK----DTIS-YGALLSGCVQNGKAEEAFLVFKKMQACNME 405

Query: 400 P 400
           P
Sbjct: 406 P 406



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 10/173 (5%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD IP  ++   NAL+  Y     +   ++L R M    +  + +T   +L+AC+ 
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSA 112

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L     GR +HA+       L  D+F+ ++LI++Y +C     A  VF     R      
Sbjct: 113 LVDLRAGRTIHAHAAAA--GLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR------ 164

Query: 260 KDVVLWTSMLGVYGRNG-YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
            DVV W +ML  Y  +G Y   +  L +     G +P+    V+++   +  G
Sbjct: 165 -DVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHG 216


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/404 (34%), Positives = 227/404 (56%), Gaps = 15/404 (3%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDA 102
           K   P N   +N +I  +   G+ + A   +  M V G+   DT+     + A T++ D 
Sbjct: 78  KIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADV 137

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G+ + + V +SG+ S ++V ++L+ LYA    +  A  +FD++P K+ V  N++++G+
Sbjct: 138 RLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGF 197

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            E       L L   M + G+  D FT+ +LL ACA + A   G++VH YMI+    L  
Sbjct: 198 AENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK--VGLTR 255

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           ++   + L+++Y +CG V +A  +F+         ++K+ V WTS++     NG+ KE I
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEM-------VDKNSVSWTSLIVGLAVNGFGKEAI 308

Query: 283 KLYEAM-LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           +L++ M    G  P E+ FV ++ ACSH G VK G EYF  M  +YK+EP  EH+ C+VD
Sbjct: 309 ELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVD 368

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           LL RAG++ KA++ I  M  +     +V +W  LL AC   G  +L + A  + L+L+P+
Sbjct: 369 LLARAGQVKKAYEYIKSMPMQ----PNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPN 424

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           + G YV+LSN+YA    W ++ ++R+ M   G+KK  G S +EV
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/400 (35%), Positives = 217/400 (54%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI-FLDTYALCSSLTASTSVKDARFGKQ 107
           RN + ++ +I  F        A   F  M V G+ FL   ++ S+L    S+ D   G Q
Sbjct: 269 RNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ 328

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + A + KSG  + +   ++L+ +YAK  LI++A + FDEI VK+++   ALLSG  +   
Sbjct: 329 LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGK 388

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                 + + M A  ++ D  T+ +L+ AC+ L+A + G+  H  +I +   L   +   
Sbjct: 389 AEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSIC-- 446

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +SLI+MY KCG +  + QVF+    R       DVV W +M+  YG +G  KE   L+  
Sbjct: 447 NSLIDMYAKCGKIDLSRQVFDKMPAR-------DVVSWNTMIAGYGIHGLGKEATTLFLG 499

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G  PD+V F+ +I+ACSH+G V  G  +F+ M H Y + P  EHY C+VDLL R G
Sbjct: 500 MKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGG 559

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            LD+A++ I  M  +    + V +WGALL AC      +LGK  ++   +L P   G +V
Sbjct: 560 LLDEAYQFIQSMPLK----ADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFV 615

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+++    +DE  ++R + K KG KK  G SWIE+ G
Sbjct: 616 LLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEING 655



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 165/361 (45%), Gaps = 22/361 (6%)

Query: 49  RNPLP----FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           R P P    +N +I  +   G    A+  +  M    +  + Y     L A +++ D R 
Sbjct: 59  RIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVDLRA 118

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+ + AH   +G  + +FV +ALIDLY +      A  +F ++P+++ V  NA+L+GY  
Sbjct: 119 GRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYAN 178

Query: 165 AKLWAGGL-ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
             ++   +  L+ +    GL  +  TL +LL   A   A   G  +HAY +R C     +
Sbjct: 179 HGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEE 238

Query: 224 -VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            V + ++L++MY KC  +  A +VF+       G   ++ V W++++G +       E  
Sbjct: 239 QVLIGTALLDMYAKCKQLVYACRVFH-------GMPVRNDVTWSALIGGFVLCDRMTEAF 291

Query: 283 KLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
            L++ ML+ G       +  + +  C+    + +G +    ++    +       + L+ 
Sbjct: 292 NLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ-LHALIAKSGIHADLTASNSLLS 350

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK--ALELD 399
           +  +AG +++A    +E+  +   S     +GALLS C   GK E   L  +K  A  ++
Sbjct: 351 MYAKAGLINEATMFFDEIAVKDTIS-----YGALLSGCVQNGKAEEAFLVFKKMQACNME 405

Query: 400 P 400
           P
Sbjct: 406 P 406



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 10/173 (5%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD IP  ++   NAL+  Y     +   ++L R M    +  + +T   +L+AC+ 
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSA 112

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L     GR +HA+       L  D+F+ ++LI++Y +C     A  VF     R      
Sbjct: 113 LVDLRAGRTIHAHAAAA--GLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMR------ 164

Query: 260 KDVVLWTSMLGVYGRNG-YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
            DVV W +ML  Y  +G Y   +  L +     G +P+    V+++   +  G
Sbjct: 165 -DVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHG 216


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/452 (31%), Positives = 242/452 (53%), Gaps = 29/452 (6%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVV 57
            +H++  + GL        +S L +           G+L +C K  +    R+ + +N +
Sbjct: 268 TIHSYSIKHGL--------ESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSI 319

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I  +  N  PL A+  F  M +  I  D   L S  +  + + + R  + VQ    + GW
Sbjct: 320 IKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGW 379

Query: 118 -LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
            L  + +G+A++ +YAKL L+  A  +F+ +P K+ +  N ++SGY +    +  +E+  
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYN 439

Query: 177 LMPALG--LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
           +M   G  +  +  T  ++L AC+   A   G ++H  +++    L  DVF+ +SL +MY
Sbjct: 440 IMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL--DVFVGTSLADMY 497

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           GKCG +  AL +F         +I + + V W +++  +G +G+ ++ + L++ ML  G 
Sbjct: 498 GKCGRLDDALSLFY--------QIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGV 549

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           KPD + FVT++SACSH+G V  G   FE M  DY + P  +HY C+VDL  RAG+L+ A 
Sbjct: 550 KPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIAL 609

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
             I  M  +       S+WGALLSAC   G  +LGK+A++   E++P +VG +V+LSN+Y
Sbjct: 610 NFIKSMPLQ----PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMY 665

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A    W+ + ++R +   KGL+K  G S +EV
Sbjct: 666 ASAGKWEGVDEIRSITSGKGLRKTPGWSSMEV 697



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 136/270 (50%), Gaps = 17/270 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSSLTASTSVKDARF 104
           ++ R+   +N++IS + R G     ++ FS FM   G+  D     S L A  +V D   
Sbjct: 112 IHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD--- 168

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G ++     K G++  V+V ++LI LY +   + +A ++FDE+P ++    NA++SGYC+
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQ 228

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           +      L L   + A+    D  T+ +LL AC        G  +H+Y I+    L +++
Sbjct: 229 SGNAKEALTLSDGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKH--GLESEL 282

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ + LI++Y + G +    +VF+    R       D++ W S++  Y  N      I L
Sbjct: 283 FVSNKLIDLYAEFGSLKDCQKVFDRMYVR-------DLISWNSIIKAYELNEQPLRAILL 335

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
           ++ M ++  +PD +  +++ S  S  G+++
Sbjct: 336 FQEMRLSRIQPDCLTLISLASILSQLGEIR 365



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 122/266 (45%), Gaps = 32/266 (12%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            K + A +  S  + +V + + L++LY  L  +  A   FD I  ++    N ++SGY  
Sbjct: 70  AKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGR 129

Query: 165 AKLWAGGLELVR----LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           A   +   E++R     M + GL  D+ T  ++L+AC  ++    G ++H   ++     
Sbjct: 130 AGYSS---EVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALK--FGF 181

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             DV++ +SLI +Y + G V  A  +F+    R       D+  W +M+  Y ++G  KE
Sbjct: 182 MWDVYVAASLIHLYCRYGAVVNARILFDEMPTR-------DMGSWNAMISGYCQSGNAKE 234

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----Y 336
            + L + +       D V  V+++SAC+  G    G+      +H Y ++ G E      
Sbjct: 235 ALTLSDGL----RAMDSVTVVSLLSACTEAGDFNRGV-----TIHSYSIKHGLESELFVS 285

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDR 362
           + L+DL    G L    K+ + M  R
Sbjct: 286 NKLIDLYAEFGSLKDCQKVFDRMYVR 311



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 38/196 (19%)

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
            L R C  L +A   + +HA ++    N   +V + + L+ +Y   G V        LA 
Sbjct: 59  TLFRYCTNLQSA---KCLHARLV--VSNAIQNVCISAKLVNLYCYLGNVA-------LAR 106

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA-MLMNGTKPDEVAFVTVISACS-- 308
           +  +   N+DV  W  M+  YGR GY  EVI+ +   ML +G +PD   F +V+ AC   
Sbjct: 107 YTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNV 166

Query: 309 ------HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
                 H   +K G   F W V+           + L+ L CR G +  A  L +EM  R
Sbjct: 167 TDGNKIHCLALKFG---FMWDVYV---------AASLIHLYCRYGAVVNARILFDEMPTR 214

Query: 363 GHGSSSVSMWGALLSA 378
             GS     W A++S 
Sbjct: 215 DMGS-----WNAMISG 225


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 213/385 (55%), Gaps = 13/385 (3%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +NG    AL  +  M  + +    +A  ++L A   +++   G+ V A V KS     
Sbjct: 5   YSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGPD 64

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
             V + L+ LY +    ++   +FD++P +N    N+L+SG+ +       L++ R M  
Sbjct: 65  QVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQR 124

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+ +   TL+ +L  CA ++A   G+++HA +++       DV + +SL++MY KCG+V
Sbjct: 125 EGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARR--PDVLVLNSLVDMYVKCGVV 182

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
               ++F       +G  +KD+  W +ML  Y  NGY +  + L+  M   G +PD+V F
Sbjct: 183 DYGRRLF-------DGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTF 235

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + ++S CSH G  + G + F  M  D+ + P  EHY+CLVD+L RAG +D A  ++  M 
Sbjct: 236 IALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMP 295

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +  G    S+WG+LL++C    +  L +  A +  EL+P+N G YVMLSN+YA   MWD
Sbjct: 296 MKTSG----SIWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWD 351

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
            +  +RE+M+ + ++K+ GCSWI+V
Sbjct: 352 SVNMVREMMQTRRIRKEAGCSWIQV 376



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN   +N +IS F +      AL  F  M   G+      L + L     V     GK++
Sbjct: 94  RNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTALLSGKEI 153

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + KS     V V ++L+D+Y K  ++     +FD +  K+    N +L+GY      
Sbjct: 154 HAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYM 213

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              ++L   M + G+  D  T  ALL  C+     E G+++   M      +   +   +
Sbjct: 214 RVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRM-EMDFGVSPSLEHYA 272

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
            L++M G+ G +  AL V      +  G I      W S+L
Sbjct: 273 CLVDMLGRAGRIDAALVVVKNMPMKTSGSI------WGSLL 307


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 140/413 (33%), Positives = 220/413 (53%), Gaps = 27/413 (6%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           P + + ++ VI+ + + G    AL TF  M ++G   ++  + S L+A  S+     G +
Sbjct: 357 PLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGME 416

Query: 108 VQAHVTKSGWLS------------SVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSV 153
             A+  K   LS             + V +ALID+Y+K      A  +F+ IP +  N V
Sbjct: 417 THAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVV 476

Query: 154 CANALLSGYCEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
               ++ GY +       L+L   M      +  + +T+S +L ACA LS+   G+Q+HA
Sbjct: 477 TWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHA 536

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           Y+ R      +  F+ + LI+MY KCG V  A  VF+    R E       V WTSM+  
Sbjct: 537 YVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNE-------VSWTSMMSG 589

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           YG +G  KE + +++ M   G  PD+++F+ ++ ACSH+G V  G++YF+ M  DY +  
Sbjct: 590 YGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIA 649

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
             +HY+C++DLL R+G LDKAWK I EM        S ++W ALLSAC      EL + A
Sbjct: 650 SAQHYACVIDLLARSGRLDKAWKTIQEM----PMEPSAAIWVALLSACRVHSNVELAEYA 705

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
             K + +   N G Y ++SN+YA    W ++ ++R+LMK+ G+KK  GCSW++
Sbjct: 706 LNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQ 758



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 177/414 (42%), Gaps = 66/414 (15%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMH--VHGIFL----DTYALCSSLTASTSVKDARFG 105
           + +N +++   +  +P  AL  FS M   VH        D  ++ + L A  S+K     
Sbjct: 219 ISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQT 278

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++ ++  ++G  +  FV +ALID YAK   + DA  +F+ +  K+ V  NA+++GY ++
Sbjct: 279 KEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQS 338

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSA--------------------------------- 192
             +    EL + M    +  D  T SA                                 
Sbjct: 339 GKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTI 398

Query: 193 --LLRACAGLSAAEFGRQVHAYMIRKC----------CNLGNDVFMQSSLIEMYGKCGLV 240
             LL ACA L A   G + HAY ++KC             G D+ + ++LI+MY KC   
Sbjct: 399 ISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSF 458

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN--GTKPDEV 298
             A  +FN    R      ++VV WT M+G Y + G   + +KL+  M+       P+  
Sbjct: 459 KAARTIFNSIPRR-----ERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAY 513

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS-CLVDLLCRAGELDKAWKLIN 357
               ++ AC+H   +++G +   ++   ++ E      + CL+D+  + G++D A  + +
Sbjct: 514 TISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFD 573

Query: 358 EMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            M  R   S     W +++S    H  GK  L      +     P ++   V+L
Sbjct: 574 SMPKRNEVS-----WTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 152/334 (45%), Gaps = 47/334 (14%)

Query: 37  GTLTNCLKFLNPRNPLP---FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G  ++ L  L    P P   +N+++      G    A+     M   G   D + L  +L
Sbjct: 97  GATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYAL 156

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK--- 150
            A   +   R G      +  +G+ S+VFV +AL+ +Y++   + DA L+FDEI  K   
Sbjct: 157 KACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGID 216

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMP------ALGLDYDHFTLSALLRACAGLSAAE 204
           + +  N++++ + +       L+L   M       A     D  ++  +L ACA L A  
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALP 276

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAG 251
             +++H+Y IR       D F+ ++LI+ Y KCG +  A+ VFN             + G
Sbjct: 277 QTKEIHSYAIRN--GTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTG 334

Query: 252 HRLEGE---------------INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           +   G+               I  DV+ W++++  Y + GY +E +  ++ M++ G++P+
Sbjct: 335 YTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPN 394

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            V  ++++SAC+  G +  G+E      H Y L+
Sbjct: 395 SVTIISLLSACASLGALSQGME-----THAYSLK 423


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/396 (33%), Positives = 223/396 (56%), Gaps = 15/396 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I++  +NG+   A      M  +G   +++ L + L A + V   + GKQ+
Sbjct: 378 RNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQI 437

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A       +S +FV +ALID+YAK   +  A+ +FD    K+ V  N L+ GY +++  
Sbjct: 438 HAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR-SEKDDVSYNTLIVGYSQSQCC 496

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M + G++YD  +    L ACA LSA + G+++H  ++R+  N     F+ +
Sbjct: 497 FESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLN--THPFLAN 554

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL+++Y K G++  A ++FN    R+     KDV  W +M+  YG +G      +L++ M
Sbjct: 555 SLLDLYTKGGMLATASKIFN----RI---TRKDVASWNTMILGYGMHGQIDVAFELFDLM 607

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G   D V+++ V+SACSH G V  G +YF  M+    ++P   HY+C+VDLL RAG+
Sbjct: 608 KDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAGQ 666

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L ++ ++I  M       ++  +WGALL +C   G  EL +LAA+   EL P + G Y +
Sbjct: 667 LSESVEIITNM----PFPANSDVWGALLGSCRIHGDIELARLAAEHLFELKPEHSGYYTL 722

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           L N+Y++  MW+E  +++ LMK + ++K+   SW++
Sbjct: 723 LRNMYSESGMWNEANEIKTLMKSRKVQKNPAYSWVQ 758



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 150/310 (48%), Gaps = 10/310 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++S    NG    A +    M   GI ++  +L S + A  + +D  FG  V
Sbjct: 176 RDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSV 235

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V KSG  S V +G+AL+D+Y K   +  +  +F+ +  KN V  N+ L  +  A   
Sbjct: 236 HGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFH 295

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LE+ R+M    +     TLS+LL A   L     G++VH Y IR+   + +D+F+ +
Sbjct: 296 EDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRA--MESDIFIAN 353

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++MY K G + KA  +F      +EG   ++VV W +M+    +NG   E   L   M
Sbjct: 354 SLMDMYAKFGCLEKASAIF----ENIEG---RNVVSWNAMIANLAQNGAETEAFSLVIEM 406

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             NG  P+    V ++ ACS    VK+G +   W +H   L       + L+D+  + G+
Sbjct: 407 QKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIH-RSLMSDLFVSNALIDVYAKCGQ 465

Query: 349 LDKAWKLINE 358
           L  A  + + 
Sbjct: 466 LSVAQDIFDR 475



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 173/367 (47%), Gaps = 15/367 (4%)

Query: 36  LGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
            G L + ++  N    +N + +N  +  F   G     L+ F  M  H +   +  L S 
Sbjct: 261 FGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSL 320

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L A   +     GK+V  +  +    S +F+ ++L+D+YAK   +  A  +F+ I  +N 
Sbjct: 321 LPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNV 380

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  NA+++   +         LV  M   G   + FTL  LL AC+ +++ + G+Q+HA+
Sbjct: 381 VSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAW 440

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            I +  +L +D+F+ ++LI++Y KCG ++ A  +F+ +         KD V + +++  Y
Sbjct: 441 SIHR--SLMSDLFVSNALIDVYAKCGQLSVAQDIFDRS--------EKDDVSYNTLIVGY 490

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            ++    E + L++ M   G + D V+F+  +SAC++    K G E    +V    L   
Sbjct: 491 SQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRL-LNTH 549

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
           P   + L+DL  + G L  A K+ N +  +   S +  + G  +    D   FEL  L  
Sbjct: 550 PFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMHGQIDVA-FELFDLMK 608

Query: 393 QKALELD 399
              ++ D
Sbjct: 609 DDGVDYD 615



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 147/358 (41%), Gaps = 64/358 (17%)

Query: 106 KQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSVCANALLSGY 162
           ++  A    SG L+ S+ +  AL+  YA L  I  A L+    P++  ++   N+L    
Sbjct: 22  RRAHAASLVSGALTASLPLAGALLLSYAALRDIPSARLILRHHPLRLRSAFLWNSLSRAL 81

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF-----GRQVHAYMIRKC 217
             A L +  L +   M   G+  D  T    L A A    AE      G ++HA  +R+ 
Sbjct: 82  ASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAEAEHPAKGAELHAAALRRG 141

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
             L  DVF  ++L+  Y   G    A +VF+    R       D+V W S++     NG 
Sbjct: 142 LLLA-DVFAGNTLVTFYAARGRAADARRVFDEMPAR-------DIVSWNSLVSALLTNGM 193

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY- 336
            ++  +    M+ +G   +  + V+V+ AC        G+      VH   L+ G +   
Sbjct: 194 LEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLS-----VHGLVLKSGLDSVV 248

Query: 337 ---SCLVDLLCRAGELDKAWKLINEMLDRGHGS--------------------------- 366
              + LVD+  + G+L+ + ++ N M ++   S                           
Sbjct: 249 NLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEH 308

Query: 367 ----SSVSMWGALLSACHDCGKFELGK----LAAQKALELDPHNVGIYVMLSNLYAKF 416
                SV++  +LL A  D G F LGK     + ++A+E D   + I   L ++YAKF
Sbjct: 309 EVTPGSVTL-SSLLPALVDLGYFHLGKEVHGYSIRRAMESD---IFIANSLMDMYAKF 362


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 224/431 (51%), Gaps = 48/431 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N +I+ F  +G    A+  F  MH+ G   D   + S L A   ++D   G  + 
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIH 273

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL-----SGYCE 164
            +V K G +S   V SALID+Y K     +   +FD++   +    NA +     +G  E
Sbjct: 274 GYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVE 333

Query: 165 AKL-----------------WAG-------------GLELVRLMPALGLDYDHFTLSALL 194
           + L                 W                LEL R M   G+  +  T+  LL
Sbjct: 334 SSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLL 393

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            AC  ++A   G+  H + +R+   +  DV++ S+LI+MY KCG +  +   F       
Sbjct: 394 PACGNIAALMHGKAAHCFSLRR--GISTDVYVGSALIDMYAKCGRIQASRICF------- 444

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
           +G   K++V W +++  Y  +G  KE +++++ M  +G KPD ++F  V+SACS +G  +
Sbjct: 445 DGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTE 504

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G  YF  M   Y +E   EHY+C+V LL RAG+L++A+ +I  M      +    +WGA
Sbjct: 505 EGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRM----PVNPDACVWGA 560

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LLS+C       LG++AA+K  EL+P N G Y++LSN+YA   MW+E+ ++R++MK KGL
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGL 620

Query: 435 KKDVGCSWIEV 445
           +K+ GCSWIEV
Sbjct: 621 RKNPGCSWIEV 631



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 14/221 (6%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           +S TAS S       +Q  AH+ K+G  +   + + L+  YA  +   DA L+ D +P  
Sbjct: 23  NSTTASLSQT-----RQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEP 77

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N    + L+  + +   +   L     M   GL  D+  L + ++ACAGLSA +  RQVH
Sbjct: 78  NVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVH 137

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
              I       +D F+QSSL+ MY KC  +  A +VF+    R+      DVV W++++ 
Sbjct: 138 G--IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFD----RM---FEPDVVSWSALVA 188

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
            Y R G   E  +L+  M  +G +P+ +++  +I+  +H+G
Sbjct: 189 AYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSG 229



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 167/421 (39%), Gaps = 83/421 (19%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNL--GTLTNCLKFLNPRNPLPFNVVI 58
             HAH  +TGL       F    +       +  N+     T  L  +   N   F+ +I
Sbjct: 34  QAHAHILKTGL-------FNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
             F +     +AL TFS M   G+  D   L S++ A   +   +  +QV    + SG+ 
Sbjct: 87  YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFD 146

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC------EAK------ 166
           S  FV S+L+ +Y K   I DA  +FD +   + V  +AL++ Y       EAK      
Sbjct: 147 SDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEM 206

Query: 167 -----------------------LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
                                  L++  + +   M   G + D  T+S++L A   L   
Sbjct: 207 GDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDL 266

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK--- 260
             G  +H Y+I++   L +D  + S+LI+MYGKC   ++  QVF+   H   G  N    
Sbjct: 267 VMGILIHGYVIKQ--GLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIF 324

Query: 261 -------------------------DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
                                    +VV WTSM+    +NG   E ++L+  M + G KP
Sbjct: 325 GLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKP 384

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY--SCLVDLLCRAGELDK 351
           + V    ++ AC +   +  G        H + L  G   + Y  S L+D+  + G +  
Sbjct: 385 NSVTIPCLLPACGNIAALMHG-----KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQA 439

Query: 352 A 352
           +
Sbjct: 440 S 440


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 224/431 (51%), Gaps = 48/431 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N +I+ F  +G    A+  F  MH+ G   D   + S L A   ++D   G  + 
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIH 273

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL-----SGYCE 164
            +V K G +S   V SALID+Y K     +   +FD++   +    NA +     +G  E
Sbjct: 274 GYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVE 333

Query: 165 AKL-----------------WAG-------------GLELVRLMPALGLDYDHFTLSALL 194
           + L                 W                LEL R M   G+  +  T+  LL
Sbjct: 334 SSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLL 393

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            AC  ++A   G+  H + +R+   +  DV++ S+LI+MY KCG +  +   F       
Sbjct: 394 PACGNIAALMHGKAAHCFSLRR--GISTDVYVGSALIDMYAKCGRIQASRICF------- 444

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
           +G   K++V W +++  Y  +G  KE +++++ M  +G KPD ++F  V+SACS +G  +
Sbjct: 445 DGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTE 504

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G  YF  M   Y +E   EHY+C+V LL RAG+L++A+ +I  M      +    +WGA
Sbjct: 505 EGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRM----PVNPDACVWGA 560

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LLS+C       LG++AA+K  EL+P N G Y++LSN+YA   MW+E+ ++R++MK KGL
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGL 620

Query: 435 KKDVGCSWIEV 445
           +K+ GCSWIEV
Sbjct: 621 RKNPGCSWIEV 631



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 14/221 (6%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           +S TAS S       +Q  AH+ K+G  +   + + L+  YA  +   DA L+ D +P  
Sbjct: 23  NSTTASLSQT-----RQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEP 77

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N    + L+  + +   +   L     M   GL  D+  L + ++ACAGLSA +  RQVH
Sbjct: 78  NVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVH 137

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
              I       +D F+QSSL+ MY KC  +  A +VF+    R+      DVV W++++ 
Sbjct: 138 G--IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFD----RM---FEPDVVSWSALVA 188

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
            Y R G   E  +L+  M  +G +P+ +++  +I+  +H+G
Sbjct: 189 AYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSG 229



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 167/421 (39%), Gaps = 83/421 (19%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNL--GTLTNCLKFLNPRNPLPFNVVI 58
             HAH  +TGL       F    +       +  N+     T  L  +   N   F+ +I
Sbjct: 34  QAHAHILKTGL-------FNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
             F +     +AL TFS M   G+  D   L S++ A   +   +  +QV    + SG+ 
Sbjct: 87  YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFD 146

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC------EAK------ 166
           S  FV S+L+ +Y K   I DA  +FD +   + V  +AL++ Y       EAK      
Sbjct: 147 SDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEM 206

Query: 167 -----------------------LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
                                  L++  + +   M   G + D  T+S++L A   L   
Sbjct: 207 GDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDL 266

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK--- 260
             G  +H Y+I++   L +D  + S+LI+MYGKC   ++  QVF+   H   G  N    
Sbjct: 267 VMGILIHGYVIKQ--GLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIF 324

Query: 261 -------------------------DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
                                    +VV WTSM+    +NG   E ++L+  M + G KP
Sbjct: 325 GLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKP 384

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY--SCLVDLLCRAGELDK 351
           + V    ++ AC +   +  G        H + L  G   + Y  S L+D+  + G +  
Sbjct: 385 NSVTIPCLLPACGNIAALMHG-----KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQA 439

Query: 352 A 352
           +
Sbjct: 440 S 440


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/450 (33%), Positives = 234/450 (52%), Gaps = 32/450 (7%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFN----- 55
            VH +  ++GL+L   +   S L   Y+ C      G+L    K       +PF      
Sbjct: 471 QVHGYTLKSGLVLDLTV--GSSLFTLYSKC------GSLEESYKLFQG---IPFKDNACW 519

Query: 56  -VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
             +IS F   G    A+  FS M   G   D   L + LT  +S      GK++  +  +
Sbjct: 520 ASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLR 579

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           +G    + +GSAL+++Y+K   +  A  ++D +P  + V  ++L+SGY +  L   G  L
Sbjct: 580 AGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLL 639

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M   G   D F +S++L+A A    +  G QVHAY+ +    L  +  + SSL+ MY
Sbjct: 640 FRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITK--IGLCTEPSVGSSLLTMY 697

Query: 235 GKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
            K G +    + F+        +IN  D++ WT+++  Y ++G   E +++Y  M   G 
Sbjct: 698 SKFGSIDDCCKAFS--------QINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGF 749

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           KPD+V FV V+SACSH G V+    +   MV DY +EP   HY C+VD L R+G L +A 
Sbjct: 750 KPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAE 809

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
             IN M    H      +WG LL+AC   G+ ELGK+AA+KA+EL+P + G Y+ LSN+ 
Sbjct: 810 SFINNM----HIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNIL 865

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           A+   WDE+ + R+LMK  G++K+ G S +
Sbjct: 866 AEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 171/350 (48%), Gaps = 22/350 (6%)

Query: 22  RLMLPYTTCRHKK------NLGTLTNCLKFLN--PR-NPLPFNVVISDFCRNGSPLYALK 72
           R +LP+     K       N G++ +  K  +  P+ + +  N++IS + ++     +L+
Sbjct: 77  RYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLR 136

Query: 73  TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
            FS MH  G   +  +  S ++A ++++   F + V  H  K G+     V SALID+++
Sbjct: 137 FFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFS 196

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
           K L   DA  +F +    N  C N +++G    + +    +L   M       D +T S+
Sbjct: 197 KNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSS 256

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L ACA L    FG+ V A +I KC     DVF+ ++++++Y KCG + +A++VF+    
Sbjct: 257 VLAACASLEKLRFGKVVQARVI-KCG--AEDVFVCTAIVDLYAKCGHMAEAMEVFS---- 309

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
           R+    N  VV WT ML  Y ++      +++++ M  +G + +     +VISAC     
Sbjct: 310 RIP---NPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSM 366

Query: 313 VKLGIEYFEWMVHD-YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           V    +   W+    + L+      + L+ +  ++G++D + ++  ++ D
Sbjct: 367 VCEASQVHAWVFKSGFYLDSSVA--AALISMYSKSGDIDLSEQVFEDLDD 414



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 160/336 (47%), Gaps = 30/336 (8%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I+   RN +       F  M V     D+Y   S L A  S++  RFGK VQA V 
Sbjct: 219 WNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVI 278

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G    VFV +A++DLYAK   + +A  +F  IP  + V    +LSGY ++      LE
Sbjct: 279 KCG-AEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALE 337

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           + + M   G++ ++ T+++++ AC   S      QVHA++ +    L + V   ++LI M
Sbjct: 338 IFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSV--AAALISM 395

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G +  + QVF      L+    +++V    M+  + ++    + I+L+  ML  G 
Sbjct: 396 YSKSGDIDLSEQVF----EDLDDIQRQNIV--NVMITSFSQSKKPGKAIRLFTRMLQEGL 449

Query: 294 KPDEVAFVTVISA--CSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAG 347
           + DE +  +++S   C + G+           VH Y L+ G        S L  L  + G
Sbjct: 450 RTDEFSVCSLLSVLDCLNLGK----------QVHGYTLKSGLVLDLTVGSSLFTLYSKCG 499

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
            L++++KL      +G      + W +++S  ++ G
Sbjct: 500 SLEESYKLF-----QGIPFKDNACWASMISGFNEYG 530



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 132/281 (46%), Gaps = 27/281 (9%)

Query: 103 RFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           R  K +QAH+ +   L   VF+  +L+  Y+    + DA  +FD IP  + V  N ++SG
Sbjct: 65  RTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISG 124

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           Y + +L+   L     M  LG + +  +  +++ AC+ L A  F   V  + I+    +G
Sbjct: 125 YKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIK----MG 180

Query: 222 NDVF--MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
              +  ++S+LI+++ K      A +VF          ++ +V  W +++    RN  + 
Sbjct: 181 YFFYEVVESALIDVFSKNLRFEDAYKVF-------RDSLSANVYCWNTIIAGALRNQNYG 233

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--- 336
            V  L+  M +   KPD   + +V++AC+   +++ G      +V    ++ G E     
Sbjct: 234 AVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFG-----KVVQARVIKCGAEDVFVC 288

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + +VDL  + G + +A ++ + + +      SV  W  +LS
Sbjct: 289 TAIVDLYAKCGHMAEAMEVFSRIPN-----PSVVSWTVMLS 324


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 216/397 (54%), Gaps = 12/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I+ + ++G    AL  F  M    +  +   + + L+A         G  V
Sbjct: 227 RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWV 286

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           ++ +   G  S++ + +ALID+Y+K   +  A  +F+ I  K+ +  N ++ GY     +
Sbjct: 287 RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSY 346

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L R M    ++ +  T  ++L ACA L A + G+ +HAY+ +K   L N   + +
Sbjct: 347 KEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTN-TSLWT 405

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A QVF        G   K +  W +M+     +G+    ++L+  M
Sbjct: 406 SLIDMYAKCGNIEAAKQVF-------AGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G +PD++ FV V+SACSH G V+LG + F  MV DY + P  +HY C++DLL RAG 
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGL 518

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            D+A  L+  M  +  G    ++WG+LL AC   G  ELG+ AA+   EL+P N G YV+
Sbjct: 519 FDEAEALMKNMEMKPDG----AIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVL 574

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    WD++ ++R  + +KG+KK  GCS IEV
Sbjct: 575 LSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEV 611



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 202/466 (43%), Gaps = 86/466 (18%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N   +N +I     + SP+ A+  +  M + G+  ++Y     L +   V   + GKQ+ 
Sbjct: 96  NQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIH 155

Query: 110 AHVTKSGWLSSVFVGSALIDLYAK--------LLL-----------------------IH 138
            HV K G  S  FV ++LI++YA+        L+                        + 
Sbjct: 156 GHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLD 215

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           DA  +F+EIPV+++V  NA+++GY ++  +   L   + M    +  +  T+  +L ACA
Sbjct: 216 DARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACA 275

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
              + E G  V +++  +   LG+++ + ++LI+MY KCG + KA  +F       EG  
Sbjct: 276 QSGSLELGNWVRSWI--EDHGLGSNLRLVNALIDMYSKCGDLDKARDLF-------EGIC 326

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            KD++ W  M+G Y     +KE + L+  M  +  +P++V FV+++ AC++ G + LG  
Sbjct: 327 EKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKW 386

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA--------------W----------- 353
              ++   +        ++ L+D+  + G ++ A              W           
Sbjct: 387 IHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHG 446

Query: 354 ------KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
                 +L  +M D G     ++  G +LSAC   G  ELG+      +E        Y 
Sbjct: 447 HANMALELFRQMRDEGFEPDDITFVG-VLSACSHAGLVELGRQCFSSMVE-------DYD 498

Query: 408 MLSNLYAKFCMWDEIG------QLRELMKEKGLKKDVGCSWIEVTG 447
           +   L    CM D +G      +   LMK   +K D G  W  + G
Sbjct: 499 ISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPD-GAIWGSLLG 543



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 180/403 (44%), Gaps = 65/403 (16%)

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA--KLLLIHDAELMFDEIPV 149
           SLT  ++ K  +  KQ+ + + K+G  ++ F  S LI+  A      +  A L+F+ I  
Sbjct: 35  SLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQ 94

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
            N    N ++ G   +    G ++    M   G++ + +T   LL++CA + A + G+Q+
Sbjct: 95  PNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQI 154

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEG 256
           H ++++    L +D F+ +SLI MY + G +  A  VF+             + G+ L G
Sbjct: 155 HGHVLK--LGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG 212

Query: 257 EIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
            ++           +D V W +M+  Y ++G F+E +  ++ M      P+E   VTV+S
Sbjct: 213 CLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLS 272

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
           AC+ +G ++LG     W + D+ L       + L+D+  + G+LDKA  L   + ++   
Sbjct: 273 ACAQSGSLELGNWVRSW-IEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDII 331

Query: 366 SSSVSMWG------------------------------ALLSACHDCGKFELGK----LA 391
           S +V + G                              ++L AC   G  +LGK      
Sbjct: 332 SWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYI 391

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
            +K L L   N  ++  L ++YAK    +   Q+   MK K L
Sbjct: 392 DKKFLGLT--NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSL 432


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 132/397 (33%), Positives = 214/397 (53%), Gaps = 11/397 (2%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +   G+   AL  F  M    +  D   + + ++A       + G+QV
Sbjct: 198 KDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQV 257

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +   G  S++ + +ALIDLY+K   +  A  +F  +  K+ +  N ++ GY    L+
Sbjct: 258 HSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLY 317

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M   G + +  T+ ++L ACA L A +FGR +H Y+ ++   + N   +++
Sbjct: 318 KEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRT 377

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A QVFN   HR     N       +M+  +  +G       ++  M
Sbjct: 378 SLIDMYAKCGDIEAAHQVFNSMHHRTLSACN-------AMIFGFAMHGRANAAFDIFSRM 430

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             NG +PD++ FV ++SACSH+G + LG   F  M  +YK+ P  EHY C++DLL   G 
Sbjct: 431 RKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGL 490

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +A ++IN M     G     +W +LL AC   G  ELG+  AQK ++++P N G YV+
Sbjct: 491 FKEAEEMINTMTMEPDG----VIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVL 546

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W+E+  +R L+ +KG+KK  GCS IE+
Sbjct: 547 LSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEI 583



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 193/409 (47%), Gaps = 53/409 (12%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA   +TGL      +  SRL+       +   L    +  + +   N L +N +    
Sbjct: 21  IHAQMIKTGLHNTNYAL--SRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGH 78

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +  P+ A+K +  M   G+  ++Y     L +   +K ++ G+Q+  HV K G+   +
Sbjct: 79  ALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDL 138

Query: 122 FVGSALIDLYAK------------------------LLL-------IHDAELMFDEIPVK 150
           +V ++LI +Y K                        L+        I  A+ MFDEIPVK
Sbjct: 139 YVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVK 198

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V  NA++SGY +       L+L + M    +  D  T+  ++ ACA   + + GRQVH
Sbjct: 199 DVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVH 258

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           +++      LG+++ + ++LI++Y KCG V  A  +F       +G  NKDV+ W +M+G
Sbjct: 259 SWIDDH--GLGSNLKIVNALIDLYSKCGEVETACGLF-------QGLSNKDVISWNTMIG 309

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--K 328
            Y     +KE + L++ ML +G  P++V  ++++ AC+  G +  G     W +H Y  K
Sbjct: 310 GYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFG----RW-IHVYIDK 364

Query: 329 LEPGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
              G  + S     L+D+  + G+++ A ++ N M  R   + +  ++G
Sbjct: 365 RIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFG 413


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 138/413 (33%), Positives = 228/413 (55%), Gaps = 20/413 (4%)

Query: 39  LTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           L +C K  +    R+ + +N +I  +  N  PL A+  F  M +  I  D   L S  + 
Sbjct: 216 LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASI 275

Query: 96  STSVKDARFGKQVQAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
            + + D R  + VQ    + GW L  + +G+A++ +YAKL L+  A  +F+ +P  + + 
Sbjct: 276 LSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVIS 335

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
            N ++SGY +    +  +E+  +M   G +  +  T  ++L AC+   A   G ++H  +
Sbjct: 336 WNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRL 395

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVY 272
           ++    L  DVF+ +SL +MYGKCG +  AL +F         +I + + V W +++  +
Sbjct: 396 LKNGLYL--DVFVVTSLADMYGKCGRLEDALSLFY--------QIPRVNSVPWNTLIACH 445

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           G +G+ ++ + L++ ML  G KPD + FVT++SACSH+G V  G   FE M  DY + P 
Sbjct: 446 GFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPS 505

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
            +HY C+VD+  RAG+L+ A K I  M          S+WGALLSAC   G  +LGK+A+
Sbjct: 506 LKHYGCMVDMYGRAGQLETALKFIKSM----SLQPDASIWGALLSACRVHGNVDLGKIAS 561

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +   E++P +VG +V+LSN+YA    W+ + ++R +   KGL+K  G S +EV
Sbjct: 562 EHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEV 614



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 186/438 (42%), Gaps = 74/438 (16%)

Query: 14  ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKT 73
           I LI  Q  +    +   +K  + T  +    +  R+   +N++IS + R G+    ++ 
Sbjct: 17  IALICNQPNVSTHVSLSPNKSKMHTFDH----IQNRDVYAWNLMISGYGRAGNSSEVIRC 72

Query: 74  FS-FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
           FS FM   G+  D     S L A  +V D   G ++     K G++  V+V ++LI LY+
Sbjct: 73  FSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYS 129

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
           +   + +A ++FDE+PV++    NA++SGYC++      L L   + A+    D  T+ +
Sbjct: 130 RYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVS 185

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           LL AC        G  +H+Y I+          ++S L+     C  V   + V      
Sbjct: 186 LLSACTEAGDFNRGVTIHSYSIKHG--------LESELLR---DCQKVFDRMYV------ 228

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
                  +D++ W S++  Y  N      I L++ M ++  +PD +  +++ S  S  G 
Sbjct: 229 -------RDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGD 281

Query: 313 VKL--GIEYFE----WMVHD-----------------------YKLEPGPE--HYSCLVD 341
           ++    ++ F     W + D                       +   P  +   ++ ++ 
Sbjct: 282 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIIS 341

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG-KLAA---QKALE 397
              + G   +A ++ N M + G  +++   W ++L AC   G    G KL     +  L 
Sbjct: 342 GYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY 401

Query: 398 LDPHNVGIYVMLSNLYAK 415
           LD   V +   L+++Y K
Sbjct: 402 LD---VFVVTSLADMYGK 416


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/487 (30%), Positives = 241/487 (49%), Gaps = 68/487 (13%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP-----------R 49
            VHAH F  GL   C ++               K L TLT     ++P            
Sbjct: 57  QVHAHIFRKGLEQCCFVL--------------AKLLRTLTKLDVPMDPYPRLVFQQVEYP 102

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           NP  +  +I  +   G  + ++  ++ M   GI   ++   + L A ++  D   G+QV 
Sbjct: 103 NPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVH 162

Query: 110 AH-VTKSGWLSSVFVGSALIDLY-------------------------------AKLLLI 137
              +   G+ S ++VG+ LID+Y                               AK+  +
Sbjct: 163 TQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNM 222

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
             A  +FD +P+K+ V   A+++GY +       LE+   M A G+  D  TL  ++ AC
Sbjct: 223 EAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISAC 282

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A L AA++   V     +      ++V + S+LI+MY KCG V  A +VF     R+E  
Sbjct: 283 AQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFE----RME-- 336

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
             ++V  ++SM+  +  +G     ++L++ ML    KP+ V F+ V++ACSH G V+ G 
Sbjct: 337 -ERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQ 395

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + F  M   + + P  +HY+C+VDLL RAG L++A  L+  M    HG     +WGALL 
Sbjct: 396 QLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGG----VWGALLG 451

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           AC   G  ++ ++AA    EL+P+ +G Y++LSN+YA    WD++ ++R+LM+ KGLKK+
Sbjct: 452 ACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKN 511

Query: 438 VGCSWIE 444
            GCSW+E
Sbjct: 512 PGCSWVE 518



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 131/289 (45%), Gaps = 38/289 (13%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA--ELMFDEIPVKNSVCANALLSGYC 163
           KQV AH+ + G     FV + L+    KL +  D    L+F ++   N     AL+ GY 
Sbjct: 56  KQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYA 115

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
               +   + L   M   G+    FT +ALL+AC+       GRQVH   I      G+D
Sbjct: 116 LQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTIL-IGGFGSD 174

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFN------------------------LAGHRLEGEIN 259
           +++ ++LI+MY KCG +    +VF+                         A    +G   
Sbjct: 175 LYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPM 234

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           KD+V WT+M+  Y +N   +E ++++E M   G K DEV  V VISAC+  G  K    Y
Sbjct: 235 KDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAK----Y 290

Query: 320 FEWMVHDYKLEP--GPEHY----SCLVDLLCRAGELDKAWKLINEMLDR 362
             W V D   +   GP       S L+D+  + G ++ A+K+   M +R
Sbjct: 291 ANW-VRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEER 338



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 38/258 (14%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRK----CCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           L ++L  C  ++     +QVHA++ RK    CC      F+ + L+    K  +      
Sbjct: 42  LVSVLHGCTHINQV---KQVHAHIFRKGLEQCC------FVLAKLLRTLTKLDVPMDPYP 92

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
              L   ++E     +  LWT+++  Y   G F E + LY +M   G  P    F  ++ 
Sbjct: 93  --RLVFQQVE---YPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLK 147

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKL---EPGPEHY--SCLVDLLCRAGELDKAWKLINEML 360
           ACS    V LG +     VH   +     G + Y  + L+D+  + G L    ++ +EML
Sbjct: 148 ACSAALDVNLGRQ-----VHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEML 202

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIYVMLSNLYAKFCMW 419
           DR      V  W +L+ A    G  E    AA +  +  P  ++  +  +   YA+    
Sbjct: 203 DR-----DVISWTSLIVAYAKVGNME----AASELFDGLPMKDMVAWTAMVTGYAQNARP 253

Query: 420 DEIGQLRELMKEKGLKKD 437
            E  ++ E M+  G+K D
Sbjct: 254 REALEVFERMQAAGVKTD 271


>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
 gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
          Length = 608

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/438 (31%), Positives = 229/438 (52%), Gaps = 50/438 (11%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-----GIFLDTYALCSSLTASTSVKD 101
           + RN + +N ++S    +G  + AL+  + +        G+ +D + + S  TA   +  
Sbjct: 128 DSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIGA 187

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           AR  +++   V  SG   +V + +A+++ Y+K   + DA  +FD++ ++++V   +++SG
Sbjct: 188 ARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISG 247

Query: 162 YCEAK------------------LWAG-------------GLELVRLMPALGLDYDHFTL 190
           YC+ K                   W                LEL   M A G+    F L
Sbjct: 248 YCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVL 307

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGN---DVFMQSSLIEMYGKCGLVTKALQVF 247
            + L ACA L     G+++H +++R+  N+G+   ++F+ ++L++MY KCG +  A+ VF
Sbjct: 308 VSALGACAKLGLVTRGKELHCFILRR--NIGSVPFNIFIHNALVDMYSKCGDMMAAMAVF 365

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
           +    R       D + W SM+  +  NG  K+ + ++E ML+ G +P  V F+ V++AC
Sbjct: 366 DWMPER-------DFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTAC 418

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           SH+G V  G    E M  D+ +EP  EHY+  +D L R  +L++A + I ++  R  G  
Sbjct: 419 SHSGLVSNGRLVLESM-EDHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRI-GPG 476

Query: 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRE 427
           +   WGALL AC   G  EL +  A+    L+P N G YVM+SN+YA    WD+  ++R 
Sbjct: 477 TAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRG 536

Query: 428 LMKEKGLKKDVGCSWIEV 445
           LMKEKGLKKD   SWIEV
Sbjct: 537 LMKEKGLKKDQAYSWIEV 554



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 127/325 (39%), Gaps = 69/325 (21%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL---------------------------- 135
            G+ V AH+ K+   S   + + L+ LY+ L                             
Sbjct: 50  LGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAALL 109

Query: 136 ----LIHDAELMFDEIPV--KNSVCANALLSGYCEAKLWAGGLELVRLMP-----ALGLD 184
                + DA  +FD +P   +N V  N L+S           L +V  +        GL 
Sbjct: 110 RRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLA 169

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D FT+ ++  ACAG+ AA   R++H  ++     +   V M ++++  Y K   V  A 
Sbjct: 170 MDRFTVVSVATACAGIGAARPLREMHGAVV--VSGMEFTVIMANAMLNAYSKARRVEDAR 227

Query: 245 QVFNLAGHR------------------------LEGEINKDVVLWTSMLGVYGRNGYFKE 280
            +F+    R                         +   +KD + WT+++  + +NG    
Sbjct: 228 HLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDT 287

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---YS 337
            ++L+E ML  G  P     V+ + AC+  G V  G E   +++    +   P +   ++
Sbjct: 288 ALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILR-RNIGSVPFNIFIHN 346

Query: 338 CLVDLLCRAGELDKAWKLINEMLDR 362
            LVD+  + G++  A  + + M +R
Sbjct: 347 ALVDMYSKCGDMMAAMAVFDWMPER 371


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 137/397 (34%), Positives = 217/397 (54%), Gaps = 14/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I+ + +N  P  A+     M       + +   S L A  +  D+  G Q+
Sbjct: 115 KDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQI 174

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K  W   V+VGSAL+D+YA+   +  A  +FD++  KN V  NAL+SG+      
Sbjct: 175 HALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDG 234

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L +   M   G +  HFT S++  A AG+ A E G+ VHA+MI+    L    F+ +
Sbjct: 235 ETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKL--TAFVGN 292

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           ++++MY K G +  A +VF       E  +NKD+V W SML  + + G  KE +  +E M
Sbjct: 293 TMLDMYAKSGSMIDARKVF-------ERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEM 345

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G   ++++F+ +++ACSH G VK G  YF+ M+ +Y LEP  EHY  +VDLL RAG 
Sbjct: 346 RKSGIYLNQISFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGL 404

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L+ A   I +M        + ++WGALL+AC      ++G+ AA    +LDP + G  V+
Sbjct: 405 LNYALVFIFKMP----MEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVL 460

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L N+YA    WD   ++R++MK  G+KK+  CSW+E+
Sbjct: 461 LYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEI 497



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 164/325 (50%), Gaps = 31/325 (9%)

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           +A  ++   S ++ DAR   ++ AH+  S +    F+ ++LI LY K   + +A  +FD+
Sbjct: 55  HAFITACAQSKNLDDAR---KIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDK 111

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +  K+ V   +L++GY +  + A  + L+  M       + FT ++LL+A    + +  G
Sbjct: 112 MRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIG 171

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
            Q+HA  ++  C+   DV++ S+L++MY +CG +  A  VF+    +L+   +K+ V W 
Sbjct: 172 GQIHALAVK--CDWHEDVYVGSALLDMYARCGKMDMATAVFD----KLD---SKNGVSWN 222

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +++  + R G  +  + ++  M  NG +     + ++ SA +  G ++ G    +W VH 
Sbjct: 223 ALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQG----KW-VHA 277

Query: 327 YKLEPGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           + ++   +  +     ++D+  ++G +  A K+   +L++      +  W ++L+A    
Sbjct: 278 HMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNK-----DLVTWNSMLTA---F 329

Query: 383 GKFELGKLAAQKALELDPHNVGIYV 407
            ++ LGK A     E+     GIY+
Sbjct: 330 AQYGLGKEAVSHFEEM--RKSGIYL 352



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S L+  Y  C     +   T     L+ +N + +N +IS F R G    AL  F+ M  +
Sbjct: 191 SALLDMYARC---GKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRN 247

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G     +   S  +A   +     GK V AH+ KS    + FVG+ ++D+YAK   + DA
Sbjct: 248 GFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDA 307

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +F+ +  K+ V  N++L+ + +  L    +     M   G+  +  +   +L AC+  
Sbjct: 308 RKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHG 367

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
              + G+  H + + K  NL  ++    +++++ G+ GL+  AL
Sbjct: 368 GLVKEGK--HYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYAL 409


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 155/448 (34%), Positives = 230/448 (51%), Gaps = 23/448 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H     +G LL   I   S L+  Y  C H   L       + +  +  + +N +IS +
Sbjct: 229 IHEELINSGFLLDSFI--SSALVDMYGKCGH---LEMAIEVFEQMPKKTVVAWNSMISGY 283

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF--GKQVQAHVTKSGWLS 119
              G  +  ++ F  M+  G+   T    SSL    S + AR   GK V  +  ++   S
Sbjct: 284 GLKGDSISCIQLFKRMYNEGV-KPTLTTLSSLIMVCS-RSARLLEGKFVHGYTIRNRIQS 341

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY-CEAKLWAGGLELVRLM 178
            VF+ S+L+DLY K   +  AE +F  IP    V  N ++SGY  E KL+   L L   M
Sbjct: 342 DVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEA-LGLFSEM 400

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
               ++ D  T +++L AC+ L+A E G ++H  +I K   L N+  +  +L++MY KCG
Sbjct: 401 RKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEK--KLDNNEVVMGALLDMYAKCG 458

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            V +A  VF     R       D+V WTSM+  YG +G     ++L+  ML +  KPD V
Sbjct: 459 AVDEAFSVFKCLPKR-------DLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRV 511

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            F+ ++SAC H G V  G  YF  MV+ Y + P  EHYSCL+DLL RAG L +A++++ +
Sbjct: 512 TFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
                     V +   L SAC      +LG   A+  ++ DP +   Y++LSN+YA    
Sbjct: 572 ---NPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHK 628

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           WDE+  +R  MKE GLKK+ GCSWIE+ 
Sbjct: 629 WDEVRVVRSKMKELGLKKNPGCSWIEIN 656



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 177/379 (46%), Gaps = 35/379 (9%)

Query: 45  FLNPRNPLP---FNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSSLTASTSVK 100
           F N  NP     +N +++ + +N   + AL+ F   +H   +  D+Y   S L A   + 
Sbjct: 61  FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLY 120

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
               GK +   + K+G +  + VGS+L+ +YAK      A  +F+E+P K+  C N ++S
Sbjct: 121 KYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVIS 180

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            Y ++  +   LE   LM   G + +  T++  + +CA L     G ++H  +I     L
Sbjct: 181 CYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLL 240

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             D F+ S+L++MYGKCG +  A++VF       E    K VV W SM+  YG  G    
Sbjct: 241 --DSFISSALVDMYGKCGHLEMAIEVF-------EQMPKKTVVAWNSMISGYGLKGDSIS 291

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----Y 336
            I+L++ M   G KP      ++I  CS + ++  G       VH Y +    +      
Sbjct: 292 CIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEG-----KFVHGYTIRNRIQSDVFIN 346

Query: 337 SCLVDLLCRAGELDKA---WKLINEMLDRGHGSSSVSMWGALLSACHDCGK-FE-LGKLA 391
           S L+DL  + G+++ A   +KLI +        S V  W  ++S     GK FE LG  +
Sbjct: 347 SSLMDLYFKCGKVELAENIFKLIPK--------SKVVSWNVMISGYVAEGKLFEALGLFS 398

Query: 392 AQKALELDPHNVGIYVMLS 410
             +   ++P  +    +L+
Sbjct: 399 EMRKSYVEPDAITFTSVLT 417



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 148/299 (49%), Gaps = 21/299 (7%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           +DT  L   L A  + K  + GK +   V   G  + +F+   LI+LY    L   A+ +
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCV 60

Query: 144 FD--EIPVKNSVCANALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGL 200
           FD  E P + S+  N L++GY +  ++   LEL  +L+    L  D +T  ++L+AC GL
Sbjct: 61  FDNMENPCEISL-WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGL 119

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                G+ +H  +++    L  D+ + SSL+ MY KC    KA+ +FN           K
Sbjct: 120 YKYVLGKMIHTCLVKT--GLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPE-------K 170

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           DV  W +++  Y ++G FKE ++ +  M   G +P+ V   T IS+C+    +  G+E  
Sbjct: 171 DVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIH 230

Query: 321 EWMVHD-YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           E +++  + L+      S LVD+  + G L+ A ++  +M  +     +V  W +++S 
Sbjct: 231 EELINSGFLLDSFIS--SALVDMYGKCGHLEMAIEVFEQMPKK-----TVVAWNSMISG 282


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 146/432 (33%), Positives = 226/432 (52%), Gaps = 47/432 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYALCSSLTASTSVKDARFGKQ 107
           R+ + +N +I  + R G P  AL+ F  M   G +  D   +   ++ S  ++D   G++
Sbjct: 184 RDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRR 243

Query: 108 VQAHVTKSGWLSSVFVGSALIDLY-------------------------------AKLLL 136
           +  +V   G   +V + + ++D+Y                               A+  L
Sbjct: 244 LHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGL 303

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DA  +FDE+P ++    NAL++GY + K     L L   M    ++ D  T+  LL A
Sbjct: 304 MDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSA 363

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+ L A E G  VH Y+ R+  +L   V + ++L++MY KCG + KA++VF         
Sbjct: 364 CSQLGALEMGMWVHHYIDRRRVSLS--VMLGTNLVDMYSKCGNIEKAIRVFK-------- 413

Query: 257 EI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
           EI  K+ + WT+M+     +G+    IK ++ M+  G +PDE+ F+ V+SAC H G VK 
Sbjct: 414 EIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKE 473

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G E+F  MV  Y LE   +HYSC+VDLL RAG LD+A  L+N M           +WGAL
Sbjct: 474 GQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTM----PMEPDAVVWGAL 529

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
             AC   G   LG+ AA K +ELDP + GIYV+L+N+YA+  M  +  ++R +M+  G++
Sbjct: 530 FFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVE 589

Query: 436 KDVGCSWIEVTG 447
           K  GCS IE+ G
Sbjct: 590 KVPGCSCIELNG 601



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 154/342 (45%), Gaps = 55/342 (16%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L A   +++  +G  V  +V   G+ + VFV +A +   A    + +A  +FD   V++ 
Sbjct: 127 LKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDL 186

Query: 153 VCANALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           V  N L+ GY    +    LE+  R++    +  D  T+  ++   A L   E GR++H 
Sbjct: 187 VSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHG 246

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           Y+  +   +   V + + +++MY KCG + +A  VF       EG   K +V WT+M+  
Sbjct: 247 YV--ESHGVRCTVRLMNVVMDMYIKCGDLERAKSVF-------EGIDKKTIVSWTTMIVG 297

Query: 272 YGRNGYFKEVIKLYEAM----------LMNG---------------------TKPDEVAF 300
           Y + G   +  K+++ M          LM G                      +PD++  
Sbjct: 298 YAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITM 357

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDY----KLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
           V ++SACS  G +++G+    W VH Y    ++       + LVD+  + G ++KA ++ 
Sbjct: 358 VNLLSACSQLGALEMGM----W-VHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVF 412

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
            E+ ++     +   W A++S   + G  ++     Q+ +EL
Sbjct: 413 KEIPEK-----NALTWTAMISGLANHGHADVAIKYFQRMIEL 449



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 90/180 (50%), Gaps = 16/180 (8%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKA 243
           DH T   LL+ACA L    +G  V    +    +LG   DVF+ ++ +     C  + +A
Sbjct: 119 DHLTFPFLLKACARLQERNYGNAV----LGNVLSLGFHADVFVVNAAMHFLAVCSSMAEA 174

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVT 302
            ++F+       G   +D+V W +++G Y R G  +E ++++  M+ +G   PDEV  + 
Sbjct: 175 RKLFD-------GSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIG 227

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           V+S  +    ++LG     + V  + +       + ++D+  + G+L++A K + E +D+
Sbjct: 228 VVSGSAQLRDLELGRRLHGY-VESHGVRCTVRLMNVVMDMYIKCGDLERA-KSVFEGIDK 285


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 223/431 (51%), Gaps = 48/431 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N ++S F R+G    A+  F  MH  G   D   + S L +    ++   G+Q+ 
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIH 275

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG-------- 161
            +V K G L    V SA++D+Y K   ++    +FDE  +  +   NA ++G        
Sbjct: 276 GYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVD 335

Query: 162 --------YCEAKL------WAG-------------GLELVRLMPALGLDYDHFTLSALL 194
                   + E K+      W                LEL R M   G+  +  T+ ++L
Sbjct: 336 KALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSML 395

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            AC  ++A   GR  H + +R   +L +DV + S+LI+MY KCG +  +  VFN+     
Sbjct: 396 PACGNIAALGHGRSTHGFAVR--VHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMP--- 450

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                K++V W S++  Y  +G  KEV+ ++E+++    KPD ++F +++SAC   G   
Sbjct: 451 ----TKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 506

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G +YF  M  +Y ++P  EHYSC+V+LL RAG+L +A+ LI E+           +WGA
Sbjct: 507 EGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEI----PFEPDSCVWGA 562

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL++C      +L ++AAQK   L+P N G YV++SN+YA   MW E+  +R  M+  GL
Sbjct: 563 LLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGL 622

Query: 435 KKDVGCSWIEV 445
           KK+ GCSWI+V
Sbjct: 623 KKNPGCSWIQV 633



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 9/219 (4%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q  A + KSG  +  ++ + LI  Y+     +DA+L+   IP       ++L+    +AK
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L++  + +   M + GL  D   L  L + CA LSA + G+Q+H   +     L  D F+
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHC--VACVSGLDMDAFV 153

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           Q SL  MY +CG +  A +VF+           KDVV  +++L  Y R G  +EV+++  
Sbjct: 154 QGSLFHMYMRCGRMGDARKVFDRMSE-------KDVVTCSALLCGYARKGCLEEVVRILS 206

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            M  +G +P+ V++  ++S  + +G  K  +  F+ M H
Sbjct: 207 EMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHH 245



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 146/356 (41%), Gaps = 72/356 (20%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           ++  FS M  HG+  DT+ L +       +   + GKQ+      SG     FV  +L  
Sbjct: 100 SIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFH 159

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE-----------AKLWAGGLE----- 173
           +Y +   + DA  +FD +  K+ V  +ALL GY             +++   G+E     
Sbjct: 160 MYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVS 219

Query: 174 -------------------LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
                              + + M  LG   D  T+S++L +         GRQ+H Y+I
Sbjct: 220 WNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVI 279

Query: 215 RKCCNLGNDVFMQSSLIEMYGKC-------------------------------GLVTKA 243
           ++   L  D  + S++++MYGK                                GLV KA
Sbjct: 280 KQ--GLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKA 337

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
           L++F L     E ++  +VV WTS++    +NG   E ++L+  M + G KP+ V   ++
Sbjct: 338 LEMFGLFK---EQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394

Query: 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           + AC +   +  G     + V  + L+      S L+D+  + G +  +  + N M
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLD-DVHVGSALIDMYAKCGRIKMSQIVFNMM 449


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/396 (35%), Positives = 212/396 (53%), Gaps = 44/396 (11%)

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G+  + + L + + A  S+     GKQ   ++ K G+ S V V +AL+ +YA+   + DA
Sbjct: 5   GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDA 64

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAK----------------------LWAG-------- 170
             +FD++  +++   NA+++G+ + +                      + AG        
Sbjct: 65  GHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGD 124

Query: 171 -GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             L +   M   G+  D F + ++L ACA L+A E GRQ HAY+++    L  D+ + S+
Sbjct: 125 ESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFAL--DIVVGSA 182

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L++MY K G +  A QVF+    R E       V W S++    ++G   + + L+E ML
Sbjct: 183 LVDMYAKSGSMEDACQVFDKMPQRNE-------VSWNSIITGCAQHGRGNDAVLLFEQML 235

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
             G KP+E++FV V+SACSHTG V  G  YF  M  +Y + P   HY+C++DLL RAG L
Sbjct: 236 QAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCL 295

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
           D+A   IN M         VS+WGALL AC   G  EL K  A+  L ++    GIYV+L
Sbjct: 296 DEAENFINGMPVE----PDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLL 351

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           SN+YA    WD+  ++R+LMK++G+ K  G SWIEV
Sbjct: 352 SNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEV 387



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 129/260 (49%), Gaps = 36/260 (13%)

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  + FTLS +++ACA +++ E G+Q H Y+I+      +DV +Q++L+ MY +C
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIK--MGFESDVVVQTALVHMYARC 58

Query: 238 GLVTKALQVFN-------------LAGHRLEGEINK-----------DVVLWTSMLGVYG 273
           G +  A  VF+             + GH    ++ K           DVV WT+++  Y 
Sbjct: 59  GSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYA 118

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD-YKLEPG 332
           +NGY  E + ++  M   G K D     +V+SAC+    ++LG ++  ++V   + L+  
Sbjct: 119 QNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIV 178

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
               S LVD+  ++G ++ A ++ ++M  R   S     W ++++ C   G+     L  
Sbjct: 179 VG--SALVDMYAKSGSMEDACQVFDKMPQRNEVS-----WNSIITGCAQHGRGNDAVLLF 231

Query: 393 QKALE--LDPHNVGIYVMLS 410
           ++ L+  + P+ +    +LS
Sbjct: 232 EQMLQAGIKPNEISFVGVLS 251



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 132/318 (41%), Gaps = 44/318 (13%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+ + +  VI+ + +NG    +L  F+ M   G+  D + + S L+A   +     G
Sbjct: 102 MSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG 161

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q  A+V +SG+   + VGSAL+D+YAK   + DA  +FD++P +N V  N++++G  + 
Sbjct: 162 RQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQH 221

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L   M   G+  +  +   +L AC+                           
Sbjct: 222 GRGNDAVLLFEQMLQAGIKPNEISFVGVLSACS--------------------------- 254

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
                       GLV +    FNL        I  DV  +T M+ + GR G   E     
Sbjct: 255 ----------HTGLVNEGRGYFNLMTQNY--GIVPDVSHYTCMIDLLGRAGCLDEAENFI 302

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M +   +PD   +  ++ AC   G  +L     E ++       G   Y  L ++   
Sbjct: 303 NGMPV---EPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGI--YVLLSNIYAA 357

Query: 346 AGELDKAWKLINEMLDRG 363
           AG+ D A K+   M DRG
Sbjct: 358 AGQWDDAAKVRKLMKDRG 375


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 133/397 (33%), Positives = 215/397 (54%), Gaps = 15/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +++   +NG    AL  F  M   G+ +D Y   S LTA  ++  +  GKQ+
Sbjct: 244 RDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQI 303

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A+  ++ +  ++FVGSAL+D+Y+K   I  AE +F  +  KN +   A++ GY +    
Sbjct: 304 HAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCG 363

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + +   M   G+  + FTL +++ +CA L++ E G Q H   +     L   + + S
Sbjct: 364 EEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMAL--VSGLRPYITVSS 421

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +L+ +YGKCG +  A        HRL  E+   D V +T+++  Y + G  KE I L+E 
Sbjct: 422 ALVTLYGKCGSIEDA--------HRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEK 473

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           ML+ G KP+ V F+ V+SACS +G V+ G  YF  M  D+ +    +HY+C++DL  R+G
Sbjct: 474 MLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSG 533

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L +A + I +M            W  LLSAC   G  E+GK AA+  L+ DP N   YV
Sbjct: 534 RLKEAEEFIRQMPR----CPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYV 589

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +L +++A    W E+  LR  M+++ +KK+ GCSWI+
Sbjct: 590 LLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIK 626



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 153/298 (51%), Gaps = 41/298 (13%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           + A++++ D   G+QV   + + G+ +  F  S L+D+YAK+ LI DA+ +FDE+ VKN 
Sbjct: 156 VMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNV 215

Query: 153 VCANALLSGYCEAK-------------------------------LWAGGLELVRLMPAL 181
           V  N +++G    K                               L +  L++ R M A 
Sbjct: 216 VMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAE 275

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G+  D +T  ++L AC  L+A+E G+Q+HAY IR   +   ++F+ S+L++MY KC  + 
Sbjct: 276 GVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYD--GNIFVGSALVDMYSKCRSIR 333

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A  VF            K+++ WT+M+  YG+NG  +E ++++  M  +G KP++    
Sbjct: 334 LAEAVFRRM-------TCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLG 386

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           +VIS+C++   ++ G + F  M     L P     S LV L  + G ++ A +L +EM
Sbjct: 387 SVISSCANLASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEM 443



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 113/299 (37%), Gaps = 73/299 (24%)

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            +V + L+  YA+   +  A  +FD +P  N    NALLS    A+L      L   MP 
Sbjct: 45  TYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQ 104

Query: 181 L-GLDYD-------------------------------------HFTLSALLRACAGLSA 202
              + Y+                                       T+S ++ A + L  
Sbjct: 105 RDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGD 164

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------- 248
              GRQVH  ++R     G   F  S L++MY K GL+  A +VF+              
Sbjct: 165 RALGRQVHCQIMR--LGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMI 222

Query: 249 ----------LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
                      A    E  +++D + WT+M+    +NG   E + ++  M   G   D+ 
Sbjct: 223 TGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQY 282

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMV---HDYKLEPGPEHYSCLVDLL--CRAGELDKA 352
            F ++++AC      + G +   + +   +D  +  G    S LVD+   CR+  L +A
Sbjct: 283 TFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVG----SALVDMYSKCRSIRLAEA 337


>gi|125597837|gb|EAZ37617.1| hypothetical protein OsJ_21952 [Oryza sativa Japonica Group]
          Length = 615

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 216/394 (54%), Gaps = 16/394 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  +IS F RN     A++ F S + ++G+  D     S +TA  + K    G+Q  A V
Sbjct: 212 YTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQV 271

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G   +V V S+ +D+YAK  L+ +A  +FD + V+N V   ALL GYC+   +   +
Sbjct: 272 VTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVI 331

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
            L R M     D D ++L  +LRACAGLS+ + G+++H   +R       DV ++S+L++
Sbjct: 332 ALFREMDKE--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAG--WRDVVVESALVD 387

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           +Y KCG V  A  VF       E    ++ + W +M+G + +NG+ +  I L+  M+  G
Sbjct: 388 LYAKCGAVDYAYSVF-------EASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREG 440

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            +PD ++F+ V+ ACSHTG V+ G  YF  M  DY + PG EHY+C+VDL  R   L++A
Sbjct: 441 PRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 500

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
             LIN+   R    +  S+W  +L A       ++ +  ++K +EL+P     Y++L N+
Sbjct: 501 EDLINKSPFR----NDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENV 556

Query: 413 YAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           Y     W++  ++R LM+ + +KK+ G SW++  
Sbjct: 557 YRTVGRWEDALEIRRLMESRKVKKEPGMSWVDAN 590



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 160/355 (45%), Gaps = 41/355 (11%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTYALCSSLTASTSVKDA 102
           L  R+ +  + +++ F R G P  AL +   M       +  + +AL +++ A   ++D 
Sbjct: 100 LPRRDVVAHSSILAAFLRAGMPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDR 159

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             G  +   V   G+     V S+L+D+Y  +    DA  +F+E+   + +C  +L+S +
Sbjct: 160 NAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAF 219

Query: 163 CEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
                +   +   R M  + G+  D  T  +++ A         GRQ HA ++ +   L 
Sbjct: 220 VRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTR--GLC 277

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            +V ++SS ++MY KCGL+ +A +VF+    R E       V   ++LG Y +NG +++V
Sbjct: 278 GNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNE-------VSRCALLGGYCQNGEYEKV 330

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE---YFEWMV--HDYKLEPGPEHY 336
           I L+    M+    D  +  TV+ AC+    VK G E    F  M    D  +E      
Sbjct: 331 IALFRE--MDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVE------ 382

Query: 337 SCLVDLLCRAGELDKAWK---------------LINEMLDRGHGSSSVSMWGALL 376
           S LVDL  + G +D A+                +I      GHG  +++++  ++
Sbjct: 383 SALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMV 437



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 18/220 (8%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL--LIHDAELMFDEIPVKNSVCANALLSG 161
            G   +    ++G L+  ++ +AL+  Y +L   L H A   FD++P ++ V  +++L+ 
Sbjct: 56  LGFSFKGRAARAGLLADRYLANALLAFYVRLPRHLPH-ALRAFDDLPRRDVVAHSSILAA 114

Query: 162 YCEAKLWAGGLELVRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           +  A +    L  +R M A G D D       LSA ++ACA L     G  +H  ++ + 
Sbjct: 115 FLRAGMPRRALASLRDMLA-GADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVR- 172

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
              G+D  + SSL++MYG       A +VF       E     D + +TS++  + RN +
Sbjct: 173 -GFGDDGVVLSSLVDMYGHVAAPGDARKVF-------EEMRAPDGICYTSLISAFVRNDW 224

Query: 278 FKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLG 316
           F+E ++ + +ML MNG +PD   F ++++A  ++ +   G
Sbjct: 225 FEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQG 264


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/418 (33%), Positives = 223/418 (53%), Gaps = 34/418 (8%)

Query: 36  LGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI-----FLDTY 87
           +G L    + LN    RN      +IS + +N     A + F+ + +  +      +  Y
Sbjct: 308 MGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGY 367

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           + C  +  +  +    F + V+  +    W       + ++  YA++  +  A  +F+E+
Sbjct: 368 SQCGRMDEALHL----FKQMVKKDIV--SW-------NTMVASYAQVGQMDAAIKIFEEM 414

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
             KN V  N+L+SG  +   +   L+   LM   G   D  T +  L +CA L+A + G+
Sbjct: 415 KEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGK 474

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q+H  +++       D+F+ ++LI MY KCG ++ A  +F    H        DVV W S
Sbjct: 475 QLHQLVMK--SGYATDLFVSNALITMYAKCGSISSAELLFKDIDHF-------DVVSWNS 525

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           ++  Y  NG  +E +KL+  M + G  PDEV FV ++SACSH G +  G++ F+ MV  Y
Sbjct: 526 LIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAY 585

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
            +EP  EHY+C+VDLL RAG L++A++L+  M      +++  +WGALL AC   G  EL
Sbjct: 586 NIEPLAEHYACMVDLLGRAGRLEEAFQLVRGM----KINANAGIWGALLGACRIHGNLEL 641

Query: 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            K AA+K LE +PH    YV+LSN+ A+   WDE+ ++R LMKEKG +K  G SWIE+
Sbjct: 642 AKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIEL 699



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 144/329 (43%), Gaps = 42/329 (12%)

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S VF  +  I    K   I +A  +F  +  KN+V  N+++S + +    +   +L   M
Sbjct: 13  SYVFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGM 72

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
           P   +     + ++++ A       E  RQ+   M  +      D++  + +I  Y + G
Sbjct: 73  PQRNI----VSWNSMIAAYLHNDRVEEARQLFDKMPTR------DLYSWTLMITCYTRNG 122

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            + KA  +FNL  ++       + V   +M+  Y +N  F E  +L++AM       D V
Sbjct: 123 ELAKARNLFNLLPYKW------NPVCCNAMVAGYAKNRQFDEARRLFDAM----PAKDLV 172

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           ++ ++++  +  G+++LG+++FE M      E     ++ +VD     G+L+ +W    E
Sbjct: 173 SWNSMLTGYTRNGEMRLGLQFFEEMA-----ERDVVSWNLMVDGFVEVGDLNSSW----E 223

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL--ELDPHNVGIYVMLSNLYAKF 416
             ++    ++VS W  +L     CG    GK+A  + L  ++   NV  +  +   Y + 
Sbjct: 224 FFEKIPNPNTVS-WVTML-----CGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQN 277

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           C  DE   L   M EK        SW  V
Sbjct: 278 CHVDEAISLFMEMPEKN-----SISWTTV 301



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 114/259 (44%), Gaps = 27/259 (10%)

Query: 131 YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
           +A+   I +A  +FD++P++N V  NA+++ Y +       + L   MP    + +  + 
Sbjct: 243 FARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMP----EKNSISW 298

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           + ++     +   +  RQ+   M  +      +V  Q+++I  Y +   +  A Q+FN  
Sbjct: 299 TTVINGYVRMGKLDEARQLLNQMPYR------NVAAQTAMISGYVQNKRMDDARQIFNQI 352

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
             R       DVV W +M+  Y + G   E + L++ M+    K D V++ T++++ +  
Sbjct: 353 SIR-------DVVCWNTMIAGYSQCGRMDEALHLFKQMV----KKDIVSWNTMVASYAQV 401

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
           GQ+   I+ FE M      E     ++ L+  L + G    A K    M   G      S
Sbjct: 402 GQMDAAIKIFEEMK-----EKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQ-S 455

Query: 371 MWGALLSACHDCGKFELGK 389
            +   LS+C      ++GK
Sbjct: 456 TFACGLSSCAHLAALQVGK 474



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 128/290 (44%), Gaps = 24/290 (8%)

Query: 102 ARFGKQVQAH-VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           ARFGK  +A  +     + +V   +A+I  Y +   + +A  +F E+P KNS+    +++
Sbjct: 244 ARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVIN 303

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY          +L+  MP   +      +S  ++      A +   Q+    IR     
Sbjct: 304 GYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQIS---IR----- 355

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             DV   +++I  Y +CG + +AL +F       +  + KD+V W +M+  Y + G    
Sbjct: 356 --DVVCWNTMIAGYSQCGRMDEALHLF-------KQMVKKDIVSWNTMVASYAQVGQMDA 406

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            IK++E M     + + V++ ++IS  +  G     ++ F  M H+ + +P    ++C +
Sbjct: 407 AIKIFEEM----KEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQ-KPDQSTFACGL 461

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
                   L    +L   ++  G+ ++ + +  AL++    CG     +L
Sbjct: 462 SSCAHLAALQVGKQLHQLVMKSGY-ATDLFVSNALITMYAKCGSISSAEL 510



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 20/139 (14%)

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
           G+ VF  +  I   GK G + +A++VF    H       K+ V   SM+  + +NG   +
Sbjct: 12  GSYVFRHNLKITQLGKSGQIDEAIKVFQHMTH-------KNTVTHNSMISAFAKNGRISD 64

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
             +L++ M     + + V++ ++I+A  H  +V+   + F+ M       P  + YS  +
Sbjct: 65  ARQLFDGM----PQRNIVSWNSMIAAYLHNDRVEEARQLFDKM-------PTRDLYSWTL 113

Query: 341 DLLC--RAGELDKAWKLIN 357
            + C  R GEL KA  L N
Sbjct: 114 MITCYTRNGELAKARNLFN 132


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 206/376 (54%), Gaps = 14/376 (3%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           A + F  M   G+  DTY   S L A  + +    G+Q      K G     +V   LI+
Sbjct: 126 AARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLIN 185

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +YA+      A  MF  +  +  V  NA+++    +      L L R M A GL     T
Sbjct: 186 MYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVT 245

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L ++L ACA L A E GR +H Y +RK   L + V + ++LI+MYGKCG +  A+ VF  
Sbjct: 246 LISVLSACALLGALELGRWIHEY-VRKV-QLDSLVKVNTALIDMYGKCGSLEDAISVF-- 301

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                +G  ++D   W+ M+  Y  + Y +E I L+E M   G KPD+V F+ V+ ACSH
Sbjct: 302 -----QGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSH 356

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
           +G V  G++YF+ M  ++ L PG +HY C+ DLL R+G+LD+A++ I+E+  +     + 
Sbjct: 357 SGLVSEGLQYFDSM-REFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIK----PTA 411

Query: 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
            +W  LLSAC   G  +LGK   ++ LELD  + G YV+ SNL A    W+E+ ++R+LM
Sbjct: 412 ILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLM 471

Query: 430 KEKGLKKDVGCSWIEV 445
            EKG+ K  GCS IEV
Sbjct: 472 NEKGVVKVPGCSSIEV 487



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 121/312 (38%), Gaps = 56/312 (17%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I+   R+  P  AL  F  M   G+ L +  L S L+A   +     G+ +  +V 
Sbjct: 211 YNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVR 270

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K    S V V +ALID+Y K   + DA  +F  +  ++    + ++  Y         + 
Sbjct: 271 KVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAIS 330

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M   G+  D  T   +L AC+                                   
Sbjct: 331 LFEEMKKQGIKPDDVTFLGVLYACS----------------------------------- 355

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
               GLV++ LQ F+      E  +   +  +  +  +  R+G   ++ + YE +     
Sbjct: 356 --HSGLVSEGLQYFD---SMREFGLVPGIKHYGCVADLLARSG---QLDRAYEFIDELPI 407

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-------DYKLEPGPEHYSCLVDLLCRA 346
           KP  + + T++SAC   G   LG + FE ++        DY +      +S L     R 
Sbjct: 408 KPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVI------FSNLCANTGRW 461

Query: 347 GELDKAWKLINE 358
            E+++  KL+NE
Sbjct: 462 EEMNRVRKLMNE 473


>gi|125556039|gb|EAZ01645.1| hypothetical protein OsI_23682 [Oryza sativa Indica Group]
          Length = 615

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 216/394 (54%), Gaps = 16/394 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  +IS F RN     A++ F S + ++G+  D     S +TA  + K    G+Q  A V
Sbjct: 212 YTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQV 271

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G   +V V S+ +D+YAK  L+ +A  +FD + V+N V   ALL GYC+   +   +
Sbjct: 272 VTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVI 331

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
            L R M     D D ++L  +LRACAGLS+ + G+++H   +R       DV ++S+L++
Sbjct: 332 ALFREMDKE--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAG--WRDVVVESALVD 387

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           +Y KCG V  A  VF       E    ++ + W +M+G + +NG+ +  I L+  M+  G
Sbjct: 388 LYAKCGAVDYAYSVF-------EASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREG 440

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            +PD ++F+ V+ ACSHTG V+ G  YF  M  DY + PG EHY+C+VDL  R   L++A
Sbjct: 441 PRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 500

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
             LIN+   R    +  S+W  +L A       ++ +  ++K +EL+P     Y++L N+
Sbjct: 501 EDLINKSPFR----NDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENV 556

Query: 413 YAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           Y     W++  ++R LM+ + +KK+ G SW++  
Sbjct: 557 YRTVGRWEDALEIRRLMESRKVKKEPGMSWVDAN 590



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 41/370 (11%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTY 87
           R  ++L         L  R+ +  + +++ F R G P  AL +   M       +  + +
Sbjct: 85  RLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRDMLAGADDDVSPNAH 144

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           AL +++ A   ++D   G  +   V   G+     V S+L+D+Y  +    DA  +F+E+
Sbjct: 145 ALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEM 204

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFG 206
              + +C  +L+S +     +   +   R M  + G+  D  T  +++ A         G
Sbjct: 205 RAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQG 264

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           RQ HA ++ +   L  +V ++SS ++MY KCGL+ +A +VF+    R E       V   
Sbjct: 265 RQAHAQVVTR--GLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNE-------VSRC 315

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE---YFEWM 323
           ++LG Y +NG +++VI L+    M+    D  +  TV+ AC+    VK G E    F  M
Sbjct: 316 ALLGGYCQNGEYEKVIALFRE--MDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRM 373

Query: 324 V--HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI-----------NEML----DRGHGS 366
               D  +E      S LVDL  + G +D A+ +            N M+      GHG 
Sbjct: 374 AGWRDVVVE------SALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGE 427

Query: 367 SSVSMWGALL 376
            +++++  ++
Sbjct: 428 RAINLFNRMV 437



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 16/220 (7%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSG 161
           R G  +     ++G L+  ++ +AL+  Y +L   +  A   FD++P ++ V  +++L+ 
Sbjct: 55  RLGCCLHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 114

Query: 162 YCEAKLWAGGLELVRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           +  A +    L  +R M A G D D       LSA ++ACA L     G  +H  ++ + 
Sbjct: 115 FLRAGMPRRALASLRDMLA-GADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVR- 172

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
              G+D  + SSL++MYG       A +VF       E     D + +TS++  + RN +
Sbjct: 173 -GFGDDGVVLSSLVDMYGHVAAPGDARKVF-------EEMRAPDGICYTSLISAFVRNDW 224

Query: 278 FKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLG 316
           F+E ++ + +ML MNG +PD   F ++++A  ++ +   G
Sbjct: 225 FEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQG 264


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 219/403 (54%), Gaps = 13/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            K ++ RN + +N +I  + +NG    A  TF  M   G+     ++  +L A  ++ D 
Sbjct: 301 FKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDL 360

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             G+ V   + +      V V ++LI +Y+K   +  A  +F  +  K  V  NA++ GY
Sbjct: 361 ERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGY 420

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       L L   M +  +  D FTL +++ A A LS     + +H   IR    +  
Sbjct: 421 AQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTL--MDK 478

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +VF+ ++LI+ + KCG +  A ++F+L   R        V+ W +M+  YG NG+ +E +
Sbjct: 479 NVFVCTALIDTHAKCGAIQTARKLFDLMQER-------HVITWNAMIDGYGTNGHGREAL 531

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L+  M     KP+E+ F++VI+ACSH+G V+ G+ YFE M  +Y LEP  +HY  +VDL
Sbjct: 532 DLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDL 591

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG LD AWK I +M  +      +++ GA+L AC      ELG+  A +  +LDP +
Sbjct: 592 LGRAGRLDDAWKFIQDMPVK----PGITVLGAMLGACRIHKNVELGEKTADELFDLDPDD 647

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G +V+L+N+YA   MWD++ ++R  M++KG++K  GCS +E+
Sbjct: 648 GGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVEL 690



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 170/362 (46%), Gaps = 24/362 (6%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTF 74
           +FQ++L+  +  C+      ++T   +   P   +  + ++ ++  + +N +   A++ +
Sbjct: 77  LFQTKLISLF--CK----FNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFY 130

Query: 75  SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
             M    +    Y     L  S    D R G+++   V  +G+ S++F  +A+++LYAK 
Sbjct: 131 ERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKC 190

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
             I DA  MF+ +P ++ V  N +++GY +       +++V  M   G   D  TL ++L
Sbjct: 191 RQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVL 250

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            A A L A   GR +H Y  R        V + +++++ Y KCG V  A  VF       
Sbjct: 251 PAVADLKALRIGRSIHGYAFR--AGFEYMVNVATAMLDTYFKCGSVRSARLVF------- 301

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
           +G  +++VV W +M+  Y +NG  +E    +  ML  G +P  V+ +  + AC++ G ++
Sbjct: 302 KGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLE 361

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G  Y   ++ + K+       + L+ +  +   +D A  +   +  +     +V  W A
Sbjct: 362 RG-RYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHK-----TVVTWNA 415

Query: 375 LL 376
           ++
Sbjct: 416 MI 417



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 155/351 (44%), Gaps = 18/351 (5%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  CR  ++   +    + +  R+ + +N V++ + +NG    A++    M   G   D+
Sbjct: 187 YAKCRQIEDAYKM---FERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDS 243

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
             L S L A   +K  R G+ +  +  ++G+   V V +A++D Y K   +  A L+F  
Sbjct: 244 ITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKG 303

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +  +N V  N ++ GY +             M   G++  + ++   L ACA L   E G
Sbjct: 304 MSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG 363

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           R VH  +  K   +G DV + +SLI MY KC  V  A  VF    H       K VV W 
Sbjct: 364 RYVHRLLDEK--KIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKH-------KTVVTWN 414

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +M+  Y +NG   E + L+  M  +  KPD    V+VI+A +    V    ++   +   
Sbjct: 415 AMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLS-VTRQAKWIHGLAIR 473

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             ++      + L+D   + G +  A KL + M +R      V  W A++ 
Sbjct: 474 TLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQER-----HVITWNAMID 519



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           N+   Q+ LI ++ K   +T+A +VF    H+L+       VL+ +ML  Y +N   ++ 
Sbjct: 74  NEHLFQTKLISLFCKFNSITEAARVFEPVEHKLD-------VLYHTMLKGYAKNSTLRDA 126

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           ++ YE M  +   P    F  ++        ++ G E    MV     +      + +V+
Sbjct: 127 VRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGRE-IHGMVITNGFQSNLFAMTAVVN 185

Query: 342 LLCRAGELDKAWKLINEMLDR 362
           L  +  +++ A+K+   M  R
Sbjct: 186 LYAKCRQIEDAYKMFERMPQR 206


>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
 gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
 gi|223946951|gb|ACN27559.1| unknown [Zea mays]
          Length = 616

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 139/438 (31%), Positives = 229/438 (52%), Gaps = 50/438 (11%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-----GIFLDTYALCSSLTASTSVKD 101
           + RN + +N ++S    +G  + AL+  + +        G+ +D + + S  TA   +  
Sbjct: 136 DSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIGA 195

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           AR  +++   V  SG   +V + +A+++ Y+K   + DA  +FD++ ++++V   +++SG
Sbjct: 196 ARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISG 255

Query: 162 YCEAK------------------LWAG-------------GLELVRLMPALGLDYDHFTL 190
           YC+ K                   W                LEL   M A G+    F L
Sbjct: 256 YCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVL 315

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGN---DVFMQSSLIEMYGKCGLVTKALQVF 247
            + L ACA L     G+++H +++R+  N+G+   ++F+ ++L++MY KCG +  A+ VF
Sbjct: 316 VSALGACAKLGLVTRGKELHCFILRR--NIGSVPFNIFIHNALVDMYSKCGDMMAAMAVF 373

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
           +    R       D + W SM+  +  NG  K+ + ++E ML+ G +P  V F+ V++AC
Sbjct: 374 DWMPER-------DFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTAC 426

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           SH+G V  G    E M  D+ +EP  EHY+  +D L R  +L++A + I ++  R  G  
Sbjct: 427 SHSGLVSNGRLVLESM-EDHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRI-GPG 484

Query: 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRE 427
           +   WGALL AC   G  EL +  A+    L+P N G YVM+SN+YA    WD+  ++R 
Sbjct: 485 TAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRG 544

Query: 428 LMKEKGLKKDVGCSWIEV 445
           LMKEKGLKKD   SWIEV
Sbjct: 545 LMKEKGLKKDQAYSWIEV 562



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 127/325 (39%), Gaps = 69/325 (21%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL---------------------------- 135
            G+ V AH+ K+   S   + + L+ LY+ L                             
Sbjct: 58  LGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAALL 117

Query: 136 ----LIHDAELMFDEIPV--KNSVCANALLSGYCEAKLWAGGLELVRLMP-----ALGLD 184
                + DA  +FD +P   +N V  N L+S           L +V  +        GL 
Sbjct: 118 RRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLA 177

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D FT+ ++  ACAG+ AA   R++H  ++     +   V M ++++  Y K   V  A 
Sbjct: 178 MDRFTVVSVATACAGIGAARPLREMHGAVV--VSGMEFTVIMANAMLNAYSKARRVEDAR 235

Query: 245 QVFNLAGHR------------------------LEGEINKDVVLWTSMLGVYGRNGYFKE 280
            +F+    R                         +   +KD + WT+++  + +NG    
Sbjct: 236 HLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDT 295

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---YS 337
            ++L+E ML  G  P     V+ + AC+  G V  G E   +++    +   P +   ++
Sbjct: 296 ALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILR-RNIGSVPFNIFIHN 354

Query: 338 CLVDLLCRAGELDKAWKLINEMLDR 362
            LVD+  + G++  A  + + M +R
Sbjct: 355 ALVDMYSKCGDMMAAMAVFDWMPER 379


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/449 (32%), Positives = 242/449 (53%), Gaps = 26/449 (5%)

Query: 2   VHAHQFETGL---LLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVI 58
           +H +  + GL   L +C     + L+  Y      ++  T+ N +K    R+ + +N ++
Sbjct: 262 IHVYAIKLGLEFDLFVC-----NALINMYAKFGELRSAETIFNQMKV---RDIVSWNSLL 313

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW- 117
           + F +N  P+ AL  ++ MH  G+  D   L S  + +  + +    + +   VT+  W 
Sbjct: 314 AAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWF 373

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           L  + +G+A+ID+YAKL  I  A  +F+ +PVK+ +  N+L++GY +  L    +++   
Sbjct: 374 LHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSS 433

Query: 178 MPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
           M    G   +  T  ++L A + L A + G + H  +I+    L  D+F+ + L++MYGK
Sbjct: 434 MRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF--LYFDIFVSTCLVDMYGK 491

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG +  AL +F    H       +  V W +++  +G +GY  + +KL++ M   G KPD
Sbjct: 492 CGKLADALSLFYEVPH-------QSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPD 544

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
            + FV+++SACSH+G V  G   F+ M   Y + P  +HY C+VDL  RAG L+KA+  +
Sbjct: 545 HITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFV 604

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
             M  R      VS+WGALL AC      EL +  +   L+++  NVG YV+LSN+YAK 
Sbjct: 605 KNMPVR----PDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKL 660

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             W+ + ++R L +++GLKK  G S IEV
Sbjct: 661 GHWEGVDEVRSLARDRGLKKTPGWSSIEV 689



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 185/366 (50%), Gaps = 19/366 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +N +IS F  NG    AL+ F  M    + +D+  + S L     + D   G  +
Sbjct: 203 RDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLI 262

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +  K G    +FV +ALI++YAK   +  AE +F+++ V++ V  N+LL+ + + K  
Sbjct: 263 HVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKP 322

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L +   M ++G+  D  TL +L    A L      R +H ++ R+C  L +D+ + +
Sbjct: 323 VIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFL-HDIALGN 381

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           ++I+MY K G +  A +VF       EG   KDV+ W S++  Y +NG   E I +Y +M
Sbjct: 382 AIIDMYAKLGFIDSARKVF-------EGLPVKDVISWNSLITGYSQNGLANEAIDVYSSM 434

Query: 289 -LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
              +G  P++  +V++++A S  G +K G++    ++ ++ L       +CLVD+  + G
Sbjct: 435 RYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCG 493

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE---LDPHNVG 404
           +L  A  L  E+  +    SSVS W A++S CH    + L  +   K ++   + P ++ 
Sbjct: 494 KLADALSLFYEVPHQ----SSVS-WNAIIS-CHGLHGYGLKAVKLFKEMQSEGVKPDHIT 547

Query: 405 IYVMLS 410
              +LS
Sbjct: 548 FVSLLS 553



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 130/279 (46%), Gaps = 27/279 (9%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            KQ+ A +  SG   S+F+ + LI+ YA L  I  A L FD+I  K+    N+++S Y  
Sbjct: 59  AKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYAR 118

Query: 165 AKLWAGGLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
              +   ++     +    L  DH+T   ++RAC  L     GR+VH  +++       D
Sbjct: 119 IGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLK--LGFECD 173

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V++ +S I  Y + G V+ A  +F       +  + +D+  W +M+  +  NG   E ++
Sbjct: 174 VYIAASFIHFYSRFGFVSLACNLF-------DNMMIRDIGTWNAMISGFYLNGKVAEALE 226

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH--YSC--L 339
           +++ M       D V   +++  C     +  G+     ++H Y ++ G E   + C  L
Sbjct: 227 VFDEMRFKSVSMDSVTISSLLPICVQLDDIISGV-----LIHVYAIKLGLEFDLFVCNAL 281

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +++  + GEL  A  + N+M  R      +  W +LL+A
Sbjct: 282 INMYAKFGELRSAETIFNQMKVR-----DIVSWNSLLAA 315



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 151/347 (43%), Gaps = 34/347 (9%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSSLTASTSVKDARF 104
           +  ++   +N +IS + R G    A+  F+ F+    +  D Y     + A  ++ D   
Sbjct: 101 IQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD--- 157

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G++V   V K G+   V++ ++ I  Y++   +  A  +FD + +++    NA++SG+  
Sbjct: 158 GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYL 217

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
               A  LE+   M    +  D  T+S+LL  C  L     G  +H Y I+    L  D+
Sbjct: 218 NGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIK--LGLEFDL 275

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++LI MY K G +  A  +FN    R       D+V W S+L  + +N   K VI L
Sbjct: 276 FVCNALINMYAKFGELRSAETIFNQMKVR-------DIVSWNSLLAAFEQNK--KPVIAL 326

Query: 285 --YEAMLMNGTKPDEVAFVTVISACSHTGQV--KLGIEYFE----WMVHDYKLEPGPEHY 336
             Y  M   G  PD +  V++ S  +  G       I  F     W +HD  L       
Sbjct: 327 GVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALG------ 380

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           + ++D+  + G +D A K+       G     V  W +L++     G
Sbjct: 381 NAIIDMYAKLGFIDSARKVF-----EGLPVKDVISWNSLITGYSQNG 422


>gi|51091970|dbj|BAD35499.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 665

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 216/394 (54%), Gaps = 16/394 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  +IS F RN     A++ F S + ++G+  D     S +TA  + K    G+Q  A V
Sbjct: 262 YTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQV 321

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G   +V V S+ +D+YAK  L+ +A  +FD + V+N V   ALL GYC+   +   +
Sbjct: 322 VTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVI 381

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
            L R M     D D ++L  +LRACAGLS+ + G+++H   +R       DV ++S+L++
Sbjct: 382 ALFREMDKE--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAG--WRDVVVESALVD 437

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           +Y KCG V  A  VF       E    ++ + W +M+G + +NG+ +  I L+  M+  G
Sbjct: 438 LYAKCGAVDYAYSVF-------EASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREG 490

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            +PD ++F+ V+ ACSHTG V+ G  YF  M  DY + PG EHY+C+VDL  R   L++A
Sbjct: 491 PRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 550

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
             LIN+   R    +  S+W  +L A       ++ +  ++K +EL+P     Y++L N+
Sbjct: 551 EDLINKSPFR----NDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENV 606

Query: 413 YAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           Y     W++  ++R LM+ + +KK+ G SW++  
Sbjct: 607 YRTVGRWEDALEIRRLMESRKVKKEPGMSWVDAN 640



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 41/370 (11%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTY 87
           R  ++L         L  R+ +  + +++ F R G P  AL +   M       +  + +
Sbjct: 135 RLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRDMLAGADDDVSPNAH 194

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           AL +++ A   ++D   G  +   V   G+     V S+L+D+Y  +    DA  +F+E+
Sbjct: 195 ALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEM 254

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFG 206
              + +C  +L+S +     +   +   R M  + G+  D  T  +++ A         G
Sbjct: 255 RAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQG 314

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           RQ HA ++ +   L  +V ++SS ++MY KCGL+ +A +VF+    R E       V   
Sbjct: 315 RQAHAQVVTR--GLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNE-------VSRC 365

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE---YFEWM 323
           ++LG Y +NG +++VI L+    M+    D  +  TV+ AC+    VK G E    F  M
Sbjct: 366 ALLGGYCQNGEYEKVIALFRE--MDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRM 423

Query: 324 V--HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI-----------NEML----DRGHGS 366
               D  +E      S LVDL  + G +D A+ +            N M+      GHG 
Sbjct: 424 AGWRDVVVE------SALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGE 477

Query: 367 SSVSMWGALL 376
            +++++  ++
Sbjct: 478 RAINLFNRMV 487



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 18/229 (7%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL--LIHDAELMFDEIPVKNSVCANALLS 160
           R G  +     ++G L+  ++ +AL+  Y +L   L H A   FD++P ++ V  +++L+
Sbjct: 105 RLGCCLHGRAARAGLLADRYLANALLAFYVRLPRHLPH-ALRAFDDLPRRDVVAHSSILA 163

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
            +  A +    L  +R M A G D D       LSA ++ACA L     G  +H  ++ +
Sbjct: 164 AFLRAGMPRRALASLRDMLA-GADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVR 222

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
               G+D  + SSL++MYG       A +VF       E     D + +TS++  + RN 
Sbjct: 223 --GFGDDGVVLSSLVDMYGHVAAPGDARKVF-------EEMRAPDGICYTSLISAFVRND 273

Query: 277 YFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           +F+E ++ + +ML MNG +PD   F ++++A  ++ +   G +    +V
Sbjct: 274 WFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVV 322


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 135/400 (33%), Positives = 217/400 (54%), Gaps = 14/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +  +I+ + +N  P  A+     M       + +   S L A+ +  D+  G
Sbjct: 112 MRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIG 171

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            Q+ A   K  W   V+VGSAL+D+YA+   +  A  +FD++  KN V  NAL+SG+   
Sbjct: 172 GQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARK 231

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L +   M   G +  HFT S++    AG+ A E G+ VHA+M++    L    F
Sbjct: 232 GDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKL--TAF 289

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +++++MY K G +  A +VF       E  +NKD+V W SML  + + G  KE +  +
Sbjct: 290 VGNTMLDMYAKSGSMIDARKVF-------ERVLNKDLVTWNSMLTAFAQYGLGKEAVSHF 342

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M  +G   +++ F+ +++ACSH G VK G  YF+ M+ +Y LEP  EHY  +VDLL R
Sbjct: 343 EEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGR 401

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L+ A   I +M        + ++WGALL+AC      ++G+ AA    +LDP + G 
Sbjct: 402 AGLLNYALVFIFKMP----MEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGP 457

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            V+L N+YA    WD   ++R++MK  G+KK+  CSW+E+
Sbjct: 458 PVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEI 497



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 162/325 (49%), Gaps = 31/325 (9%)

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           +A  ++   S ++ DAR   ++  H+  S +    F+ ++LI LY K   + +A  +FD+
Sbjct: 55  HAFITACAQSKNLDDAR---KIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDK 111

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +  K+ V   +L++GY +  + A  + L+  M       + FT ++LL+A    + +  G
Sbjct: 112 MRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIG 171

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
            Q+HA  ++  C+   DV++ S+L++MY +CG +  A  VF+    +L+   +K+ V W 
Sbjct: 172 GQIHALAVK--CDWHEDVYVGSALLDMYARCGKMDMATAVFD----KLD---SKNGVSWN 222

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +++  + R G  +  + ++  M  NG +     + ++ S  +  G ++ G    +W VH 
Sbjct: 223 ALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQG----KW-VHA 277

Query: 327 YKLEPGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           + ++   +  +     ++D+  ++G +  A K+   +L++      +  W ++L+A    
Sbjct: 278 HMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNK-----DLVTWNSMLTA---F 329

Query: 383 GKFELGKLAAQKALELDPHNVGIYV 407
            ++ LGK A     E+     GIY+
Sbjct: 330 AQYGLGKEAVSHFEEM--RKSGIYL 352


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/408 (32%), Positives = 223/408 (54%), Gaps = 18/408 (4%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH-VHGIFLDTYALCSSLTASTSV 99
           N    +  R+   +  +++ + +   P  AL  +S M  V     + + + S++ A+ ++
Sbjct: 174 NLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAI 233

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           K  R GK++  H+ ++G  S   + S+L+D+Y K   I +A  +FD+I  K+ V   +++
Sbjct: 234 KCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMI 293

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
             Y ++  W  G  L   +       + +T S +L ACA L+  E GRQVH YM R    
Sbjct: 294 DRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTR---- 349

Query: 220 LGND--VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
           +G D   F  SSLI+MY KCG +  A        H ++G    D+V  TS++G Y +NG 
Sbjct: 350 VGFDPYSFASSSLIDMYTKCGNIESAR-------HVVDGCPKPDLVSLTSLIGGYAQNGK 402

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
             E +K ++ +L +GTKPD V FV V+SAC+H G V+ G+E+F  +   + L    +HY+
Sbjct: 403 PDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYT 462

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397
           CLVDLL R+G  ++   +++EM  +     S  +W ++L  C   G  +L + AAQ+  +
Sbjct: 463 CLVDLLARSGRFEQLKSVLSEMPMK----PSKFLWASVLGGCSTYGNIDLAEEAAQELFK 518

Query: 398 LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           ++P N   YV ++N+YA    W+E G++R+ M+E G+ K  G SW E+
Sbjct: 519 IEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEI 566



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 141/308 (45%), Gaps = 58/308 (18%)

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           C+ +   +  +    GK+V  H+  SG++  + + + ++ +YAK   + DA  +FDE+P 
Sbjct: 91  CNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPE 150

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE----- 204
           ++    N +++GY E  L      L   MP    + D ++ +A++         E     
Sbjct: 151 RDVCSWNVMVNGYAEVGLLEEARNLFDEMP----ERDSYSWTAMVTGYVKKDQPEEALVL 206

Query: 205 -------------------------------FGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
                                           G+++H +++R    L +D  + SSL++M
Sbjct: 207 YSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVR--AGLDSDEVLWSSLMDM 264

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           YGKCG + +A  +F+         I+KDVV WTSM+  Y ++  ++E   L+  ++ +  
Sbjct: 265 YGKCGCIDEARNIFDKI-------IDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCE 317

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGEL 349
           +P+E  F  V++AC+     +LG +     VH Y    G + Y    S L+D+  + G +
Sbjct: 318 RPNEYTFSGVLNACADLTTEELGRQ-----VHGYMTRVGFDPYSFASSSLIDMYTKCGNI 372

Query: 350 DKAWKLIN 357
           + A  +++
Sbjct: 373 ESARHVVD 380


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 206/372 (55%), Gaps = 14/372 (3%)

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M   G+  DTY   S L A  S +    G+Q      K+G     +V   LI++YA+
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAE 185

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A +MFD +  +  V  NA+++    + L    L L R M A GL     TL ++
Sbjct: 186 CGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISV 245

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA L A E GR +H Y IRK   L + V + ++LI+MY KCG +  A+ VF      
Sbjct: 246 LSACALLGALELGRWIHDY-IRK-MRLDSLVKVNTALIDMYAKCGSLEDAIGVF------ 297

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
            +   ++D   W+ M+  Y  +GY +E I ++E M   G KPD+V F+ V+ ACSH+G V
Sbjct: 298 -QDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMV 356

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G++YF+ M  +Y +  G +HY C+ DLL R+G+L++A+K I+E+  +     +  +W 
Sbjct: 357 SEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIK----PTAILWR 411

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
            LLSAC   G  ++GK   ++ LELD  + G YV+ SNL A    W+E+  +R+LM EKG
Sbjct: 412 TLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKG 471

Query: 434 LKKDVGCSWIEV 445
           + K  GCS IE+
Sbjct: 472 VVKVPGCSSIEI 483


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/447 (32%), Positives = 241/447 (53%), Gaps = 20/447 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VH H  +T  L    +  ++RL++ Y  C     LG        +  +N + +  +IS 
Sbjct: 111 RVHTHMIKTCYLPS--VYLRTRLIVLYNKC---DCLGDAREMFDEMPQKNVVSWTAMISA 165

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + + G    AL  F  M       + +   + LT+         G+Q+ +   K  + S 
Sbjct: 166 YSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESH 225

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +FVGS+L+D+YAK   I DA  +F  +P ++ V   A++SGY +  L    L+L R +  
Sbjct: 226 MFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQI 285

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G++ +  T +++L A +GL+A   G+QVH++++R      + V + +SLI+MY KCG V
Sbjct: 286 EGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRS--GQYSYVVLLNSLIDMYSKCGNV 343

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKPDEVA 299
             A ++F+    R         + W +ML  Y ++G  +EV++L++ M   N  KPD + 
Sbjct: 344 CYARRIFDSMPERT-------CISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSIT 396

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYK-LEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           ++ V+S CSH     +G+E F  MV+    +EP   HY C+VDLL RAG +++A+  I +
Sbjct: 397 YLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKK 456

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M        + ++WG+LL +C      E+G +  QK LEL+P N G YV+LSNLYA    
Sbjct: 457 M----PFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGK 512

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEV 445
           W+++  +R+LM+EK + K+ G SW+E+
Sbjct: 513 WEDMRNIRDLMQEKAVTKEPGRSWVEL 539



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 143/288 (49%), Gaps = 23/288 (7%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L    S +  R G++V  H+ K+ +L SV++ + LI LY K   + DA  MFDE+P KN 
Sbjct: 97  LNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNV 156

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V   A++S Y +       L L   M     + +HFT + +L +C G    E GRQ+H+ 
Sbjct: 157 VSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSI 216

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            I++  N  + +F+ SSL++MY K G +  A  VF+    R       DVV  T+++  Y
Sbjct: 217 AIKR--NYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPER-------DVVACTAIISGY 267

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            + G  +E +KL+  + + G   + V + +V++A S    +  G +     VH + L  G
Sbjct: 268 AQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQ-----VHSHVLRSG 322

Query: 333 PEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
              Y    + L+D+  + G +  A ++ + M +R     +   W A+L
Sbjct: 323 QYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER-----TCISWNAML 365



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M  LG +        +L  C    A   G++VH +MI+ C      V++++ LI +Y KC
Sbjct: 81  MAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTC--YLPSVYLRTRLIVLYNKC 138

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
             +  A ++F+           K+VV WT+M+  Y + G+  E + L+  ML + T+P+ 
Sbjct: 139 DCLGDAREMFDEMPQ-------KNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNH 191

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGEL 349
             F T++++C  +    LG E     +H   ++   E +    S L+D+  ++G +
Sbjct: 192 FTFATILTSCYGS----LGFETGR-QIHSIAIKRNYESHMFVGSSLLDMYAKSGRI 242


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 142/414 (34%), Positives = 221/414 (53%), Gaps = 22/414 (5%)

Query: 37  GTLTNCLKFL----NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           G L N L         +N + +  +I+   +NG    A   FS M   G+  + +   + 
Sbjct: 355 GQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTI 414

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           LTAS     A    Q+ A V K+ +  +  VG+AL+  Y+KL    +A  +F  I  K+ 
Sbjct: 415 LTASV----ASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDV 470

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHA 211
           V  +A+L+ Y +A    G   +   M   GL  + FT+S+++ ACA  +A  + GRQ HA
Sbjct: 471 VSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHA 530

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
             I+  C+  + + + S+L+ MY + G +  A  +F       E + ++D+V W SML  
Sbjct: 531 ISIKHRCH--DALCVSSALVSMYARKGSIESAQCIF-------ERQTDRDLVSWNSMLSG 581

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           Y ++GY ++ + ++  M   G + D V F++VI  C+H G V+ G  YF+ M  DY + P
Sbjct: 582 YAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITP 641

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
             EHY+C+VDL  RAG+LD+A  LI  M       +   +W  LL AC      ELGKLA
Sbjct: 642 TMEHYACMVDLYSRAGKLDEAMSLIEGM----SFPAGPMVWRTLLGACKVHKNVELGKLA 697

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A+K L L+P +   YV+LSN+Y+    W E  ++R+LM  K +KK+ GCSWI++
Sbjct: 698 AEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQI 751



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 158/336 (47%), Gaps = 26/336 (7%)

Query: 60  DFCRNGSPLYALKTFSFMH-VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW- 117
           D  R GS   AL  F  +H  HG  +   AL   L    SV D   GKQ+     + G  
Sbjct: 76  DHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHD 135

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
              V VG++L+D+Y K   + D   +F+ +P +N V   +LL+GY +    +  +EL   
Sbjct: 136 RGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFR 195

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR-KCCNLGNDVFMQSSLIEMYGK 236
           M A G+  +  T +++L   A     + GR+VHA  ++  CC+    VF+ +SL+ MY K
Sbjct: 196 MRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCST---VFVCNSLMNMYAK 252

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CGLV +A  VF        G   +D+V W +++     NG+  E ++L+     + T   
Sbjct: 253 CGLVEEARVVFC-------GMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLT 305

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKA 352
           +  + TVI  C++  Q+ L  +     +H   L+ G   Y    + L+D   +AG+L  A
Sbjct: 306 QSTYATVIKLCANIKQLGLARQ-----LHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNA 360

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
             +   M     GS +V  W A+++ C   G   L 
Sbjct: 361 LDIFLLM----SGSQNVVSWTAMINGCIQNGDVPLA 392



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 129/258 (50%), Gaps = 8/258 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +++ + ++G+    ++ F  M   G++ ++    S L+   S      G++V
Sbjct: 168 RNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRV 227

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K G  S+VFV ++L+++YAK  L+ +A ++F  +  ++ V  N L++G       
Sbjct: 228 HAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHD 287

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L     +        T + +++ CA +      RQ+H+ ++++  +   +V   +
Sbjct: 288 LEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVM--T 345

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++ Y K G +  AL +F L    + G  +++VV WT+M+    +NG       L+  M
Sbjct: 346 ALMDAYSKAGQLGNALDIFLL----MSG--SQNVVSWTAMINGCIQNGDVPLAAALFSRM 399

Query: 289 LMNGTKPDEVAFVTVISA 306
             +G  P++  + T+++A
Sbjct: 400 REDGVAPNDFTYSTILTA 417


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/448 (31%), Positives = 243/448 (54%), Gaps = 24/448 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVV 57
            VH+   + GL  +C++   + L+  Y  C      G+L + LK       +N + ++ +
Sbjct: 240 QVHSLAMKNGL--VCIVSVANALVTMYVKC------GSLEDALKTFELSGNKNSITWSAM 291

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           ++ F + G    ALK F  MH  G     + L   + A +       G+Q+  +  K G+
Sbjct: 292 VTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGY 351

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
              ++V SAL+D+YAK   I DA   F+ I   + V   ++++GY +   + G L L   
Sbjct: 352 ELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGK 411

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  +  T++++L+AC+ L+A + G+Q+HA +I+   N   ++ + S+L  MY KC
Sbjct: 412 MQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKY--NFSLEIPIGSALSAMYAKC 469

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G +    ++F     R+     +DV+ W +M+    +NG   E ++L+E M + GTKPD 
Sbjct: 470 GSLDDGYRIF----WRMPA---RDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDN 522

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           V FV ++SACSH G V  G  YF+ M  ++ + P  EHY+C+VD+L RAG+L +A + I 
Sbjct: 523 VTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFI- 581

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
           E     HG   + +W  LL+A  +   ++LG  A +K +EL       YV+LS++Y    
Sbjct: 582 ESATVDHG---LCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALG 638

Query: 418 MWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            W+++ ++R +MK +G+ K+ GCSWIE+
Sbjct: 639 KWEDVERVRGMMKARGVTKEPGCSWIEL 666



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 165/341 (48%), Gaps = 32/341 (9%)

Query: 27  YTTCRH--KKNLGTLTNCLKFLNPRNPLPFNVVISDFCR---NGSPLYALKTFS--FMHV 79
           Y  C H  K NL         +N ++ + +N +I+ F +   +   L+ +  F    M  
Sbjct: 55  YAKCSHFSKANL-----VFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAH 109

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
             I  + + L    TA++++ D+R G+Q  A   K+     VF  S+L+++Y K  L+ +
Sbjct: 110 KTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFE 169

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRAC 197
           A  +FDE+P +N+V    ++SGY   +L     EL +LM     G + + F  +++L A 
Sbjct: 170 ARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSAL 229

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
                   GRQVH+  ++    L   V + ++L+ MY KCG +  AL+ F L+G      
Sbjct: 230 TCYMLVNTGRQVHSLAMKN--GLVCIVSVANALVTMYVKCGSLEDALKTFELSG------ 281

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
            NK+ + W++M+  + + G   + +KL+  M  +G  P E   V VI+ACS    +  G 
Sbjct: 282 -NKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGR 340

Query: 318 EYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWK 354
           +     +H Y L+ G E      S LVD+  + G +  A K
Sbjct: 341 Q-----MHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARK 376



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 164/363 (45%), Gaps = 50/363 (13%)

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           +L   T  K  R G+ + A +  +G  SS  + ++LI+LYAK      A L+FD I  K+
Sbjct: 16  ALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKD 75

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDY-----DHFTLSALLRACAGLSAAEFG 206
            V  N L++ + + +  A  L ++ L   L + +     +  TL+ +  A + LS +  G
Sbjct: 76  VVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAG 135

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           RQ HA  ++  C+  +DVF  SSL+ MY K GLV +A  +F+    R       + V W 
Sbjct: 136 RQAHALAVKTACS--HDVFAASSLLNMYCKTGLVFEARDLFDEMPER-------NAVSWA 186

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLM--NGTKPDEVAFVTVISACS-----------HTGQV 313
           +M+  Y       E  +L++ M     G   +E  F +V+SA +           H+  +
Sbjct: 187 TMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAM 246

Query: 314 KLGI-----------------EYFEWMVHDYKLEPGPEH--YSCLVDLLCRAGELDKAWK 354
           K G+                    E  +  ++L        +S +V    + G+ DKA K
Sbjct: 247 KNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALK 306

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM--LSNL 412
           L  +M   G   S  ++ G +++AC D      G+     +L+L  + + +YV+  L ++
Sbjct: 307 LFYDMHQSGELPSEFTLVG-VINACSDACAIVEGRQMHGYSLKLG-YELQLYVLSALVDM 364

Query: 413 YAK 415
           YAK
Sbjct: 365 YAK 367



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 28/209 (13%)

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           MP L L + H  +   L  C        GR +HA ++       +   + +SLI +Y KC
Sbjct: 1   MPLLPLSHQHLQVLRALVHCTRHKQLRKGRALHARIL--VTGSFSSTQIANSLINLYAKC 58

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK---EVIKLYEAMLM--NG 292
              +KA  VF+          NKDVV W  ++  + +         V+ L+  ++M    
Sbjct: 59  SHFSKANLVFDSIN-------NKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKT 111

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGE 348
             P+      V +A S     + G +      H   ++    H     S L+++ C+ G 
Sbjct: 112 IVPNAHTLTGVFTAASTLSDSRAGRQ-----AHALAVKTACSHDVFAASSLLNMYCKTGL 166

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + +A  L +EM +R   S     W  ++S
Sbjct: 167 VFEARDLFDEMPERNAVS-----WATMIS 190


>gi|115468918|ref|NP_001058058.1| Os06g0611200 [Oryza sativa Japonica Group]
 gi|113596098|dbj|BAF19972.1| Os06g0611200 [Oryza sativa Japonica Group]
          Length = 615

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 216/394 (54%), Gaps = 16/394 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  +IS F RN     A++ F S + ++G+  D     S +TA  + K    G+Q  A V
Sbjct: 212 YTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQV 271

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G   +V V S+ +D+YAK  L+ +A  +FD + V+N V   ALL GYC+   +   +
Sbjct: 272 VTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVI 331

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
            L R M     D D ++L  +LRACAGLS+ + G+++H   +R       DV ++S+L++
Sbjct: 332 ALFREMDKE--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAG--WRDVVVESALVD 387

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           +Y KCG V  A  VF       E    ++ + W +M+G + +NG+ +  I L+  M+  G
Sbjct: 388 LYAKCGAVDYAYSVF-------EASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREG 440

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            +PD ++F+ V+ ACSHTG V+ G  YF  M  DY + PG EHY+C+VDL  R   L++A
Sbjct: 441 PRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 500

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
             LIN+   R    +  S+W  +L A       ++ +  ++K +EL+P     Y++L N+
Sbjct: 501 EDLINKSPFR----NDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENV 556

Query: 413 YAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           Y     W++  ++R LM+ + +KK+ G SW++  
Sbjct: 557 YRTVGRWEDALEIRRLMESRKVKKEPGMSWVDAN 590



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 41/370 (11%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTY 87
           R  ++L         L  R+ +  + +++ F R G P  AL +   M       +  + +
Sbjct: 85  RLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRDMLAGADDDVSPNAH 144

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           AL +++ A   ++D   G  +   V   G+     V S+L+D+Y  +    DA  +F+E+
Sbjct: 145 ALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEM 204

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFG 206
              + +C  +L+S +     +   +   R M  + G+  D  T  +++ A         G
Sbjct: 205 RAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQG 264

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           RQ HA ++ +   L  +V ++SS ++MY KCGL+ +A +VF+    R E       V   
Sbjct: 265 RQAHAQVVTR--GLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNE-------VSRC 315

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE---YFEWM 323
           ++LG Y +NG +++VI L+    M+    D  +  TV+ AC+    VK G E    F  M
Sbjct: 316 ALLGGYCQNGEYEKVIALFRE--MDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRM 373

Query: 324 V--HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI-----------NEML----DRGHGS 366
               D  +E      S LVDL  + G +D A+ +            N M+      GHG 
Sbjct: 374 AGWRDVVVE------SALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGE 427

Query: 367 SSVSMWGALL 376
            +++++  ++
Sbjct: 428 RAINLFNRMV 437



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 16/220 (7%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSG 161
           R G  +     ++G L+  ++ +AL+  Y +L   +  A   FD++P ++ V  +++L+ 
Sbjct: 55  RLGCCLHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 114

Query: 162 YCEAKLWAGGLELVRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           +  A +    L  +R M A G D D       LSA ++ACA L     G  +H  ++ + 
Sbjct: 115 FLRAGMPRRALASLRDMLA-GADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVR- 172

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
              G+D  + SSL++MYG       A +VF       E     D + +TS++  + RN +
Sbjct: 173 -GFGDDGVVLSSLVDMYGHVAAPGDARKVF-------EEMRAPDGICYTSLISAFVRNDW 224

Query: 278 FKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLG 316
           F+E ++ + +ML MNG +PD   F ++++A  ++ +   G
Sbjct: 225 FEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQG 264


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 235/434 (54%), Gaps = 25/434 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKT 73
           ++ Q+ L+  Y  C      G L    K    ++ R+ + +  +I+ + ++  P  AL  
Sbjct: 50  LVMQNTLLNLYAKC------GDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLL 103

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSV--KDARFGKQVQAHVTKSGWLSSVFVGSALIDLY 131
              M   G+  + + L S L A++ V   D   G+Q+     + G+ S+V+V  A++D+Y
Sbjct: 104 LPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMY 163

Query: 132 AKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191
           A+   + +A+L+FD +  KN V  NAL++GY           L   M    +   HFT S
Sbjct: 164 ARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYS 223

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           ++L ACA + + E G+ VHA MI+    L    F+ ++L++MY K G +  A +VF+   
Sbjct: 224 SVLCACASMGSLEQGKWVHALMIKWGEKLV--AFVGNTLLDMYAKSGSIEDAKKVFDRLA 281

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
            R       DVV W SML  Y ++G  K  ++ +E ML     P+++ F+ V++ACSH G
Sbjct: 282 KR-------DVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAG 334

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            +  G  YF+ M+  Y +EP   HY  +VDLL RAG LD+A + I+EM  +     + ++
Sbjct: 335 LLDEGRHYFD-MMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIK----PTAAV 389

Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           WGALL AC      ELG  AA+   ELD H  G +V+L N+YA    W++  ++R++MKE
Sbjct: 390 WGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKE 449

Query: 432 KGLKKDVGCSWIEV 445
            G+KK+  CSW+E+
Sbjct: 450 SGVKKEPACSWVEM 463



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 153/300 (51%), Gaps = 28/300 (9%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK + A +  S +   + + + L++LYAK   +  A  +FDE+  ++ V   AL++GY +
Sbjct: 34  GKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQ 93

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF--GRQVHAYMIRKCCNLGN 222
                  L L+  M  +GL  + FTL++LL+A +G+ + +   GRQ+H   +R      +
Sbjct: 94  HDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRY--GYDS 151

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +V++  ++++MY +C  + +A  +F++        ++K+ V W +++  Y R G   +  
Sbjct: 152 NVYVSCAILDMYARCHHLEEAQLIFDVM-------VSKNEVSWNALIAGYARKGQGDKAF 204

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----C 338
            L+  ML    KP    + +V+ AC+  G ++ G    +W VH   ++ G +  +     
Sbjct: 205 CLFSNMLRENVKPTHFTYSSVLCACASMGSLEQG----KW-VHALMIKWGEKLVAFVGNT 259

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           L+D+  ++G ++ A K+ + +  R      V  W ++L+     G   LGK+A Q+  E+
Sbjct: 260 LLDMYAKSGSIEDAKKVFDRLAKR-----DVVSWNSMLTGYSQHG---LGKVALQRFEEM 311


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 218/430 (50%), Gaps = 45/430 (10%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA-STSVKDARFGKQV 108
            P+ +N +IS   R      A  +F  M   G         S L+A      D   G QV
Sbjct: 108 TPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQV 167

Query: 109 QAHVTKSGWLSSVFVGSALIDLYA-------------------------------KLLLI 137
              V  SG L  + V +AL+D+YA                               +L  +
Sbjct: 168 HGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRV 227

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
            +A  +F  +P +++V   A++ GY +A  +   LE+ R M    +  D FT+ +++ AC
Sbjct: 228 DEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITAC 287

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A L A E G  V  YM R+   +  D F+ ++LI+MY KCG + +AL VF    HR    
Sbjct: 288 AQLGALEMGEWVRVYMSRQGIKM--DAFVGNALIDMYSKCGSIERALDVFKDMHHR---- 341

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              D   WT+++     NGY +E I+++  M+     PDEV F+ V++AC+H G V  G 
Sbjct: 342 ---DKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGR 398

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           E+F  M   Y + P   HY C++DL  RAG++ +A   I++M      + + ++WG LL+
Sbjct: 399 EFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQM----PMTPNSTIWGTLLA 454

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           AC   G  E+G+L  ++ L++DP N  +Y +LSN+YAK   W+++ +LR  + EKG+KK+
Sbjct: 455 ACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKE 514

Query: 438 VGCSWIEVTG 447
            GCS IE+ G
Sbjct: 515 PGCSLIEMNG 524



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 135/322 (41%), Gaps = 36/322 (11%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           A+  ++ M   G   D Y     L A      A   + V AHV K G   +  V ++L+ 
Sbjct: 27  AVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVT 86

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
            YA       A  +  E      V  NAL+SG+   + +         M   G      T
Sbjct: 87  AYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVT 146

Query: 190 LSALLRACA-GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
             ++L AC  G      G QVH  ++     +  D+ ++++L++MY +C  +  A ++F+
Sbjct: 147 YVSVLSACGKGTGDVLLGMQVHGRVVGS--GVLPDLRVENALVDMYAECADMESAWKLFD 204

Query: 249 -------------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKL 284
                        L+G    G ++           +D V WT+M+  Y +   F+E +++
Sbjct: 205 GMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEM 264

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLV 340
           +  M  +    DE   V+VI+AC+  G +++G    EW V  Y    G +  +     L+
Sbjct: 265 FREMQCSNVSADEFTMVSVITACAQLGALEMG----EW-VRVYMSRQGIKMDAFVGNALI 319

Query: 341 DLLCRAGELDKAWKLINEMLDR 362
           D+  + G +++A  +  +M  R
Sbjct: 320 DMYSKCGSIERALDVFKDMHHR 341



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I  + +      AL+ F  M    +  D + + S +TA   +     G+ V
Sbjct: 240 RDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWV 299

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           + ++++ G     FVG+ALID+Y+K   I  A  +F ++  ++     A++ G       
Sbjct: 300 RVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYG 359

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +E+   M  +    D  T   +L AC      + GR+    M R+  N+  +V    
Sbjct: 360 EEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSM-RETYNIAPNVVHYG 418

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            +I+++G+ G +T+AL   +      +  +  +  +W ++L 
Sbjct: 419 CIIDLFGRAGKITEALDAID------QMPMTPNSTIWGTLLA 454


>gi|357152605|ref|XP_003576175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Brachypodium distachyon]
          Length = 500

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 213/383 (55%), Gaps = 14/383 (3%)

Query: 67  PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSA 126
           P  AL+  S +   G   D YA+ ++L A   ++D   G  +     + G+L +V V SA
Sbjct: 84  PRAALELLSGLIAAGFRPDRYAVPAALRACAELQDPLLGAVLHGFAVQFGFLGNVVVSSA 143

Query: 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL--MPALGLD 184
           L+D+YAK  L+ +A  +FDE+P K+SV  N +++ Y  A + A  LE+ R   +  + + 
Sbjct: 144 LLDMYAKSGLLDNAARVFDEMPEKDSVVWNCMVTAYARAGMAAETLEIFRRAQVEVVNMA 203

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D  ++ ++L AC        GR++H  M+R C    +DV + ++LI+MY KCG V  + 
Sbjct: 204 RDLRSVPSVLNACGKEGELMKGREIHGRMVR-CLAFDSDVPIGNALIDMYAKCGHVDASR 262

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            VF        G + ++VV W++++  YG +G  KE +++Y+ ML    KP+ + F++V+
Sbjct: 263 AVF-------AGMLERNVVSWSTLISCYGVHGKGKEALRIYKEMLSQRVKPNGITFMSVL 315

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           S+CSH+G V  G   FE M   + +EP  EHY+ +VD+L RAG +++A  LI +M     
Sbjct: 316 SSCSHSGLVTDGRMIFESMSKVHGVEPTAEHYASMVDILGRAGAIEEAVGLIRKM----P 371

Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQ 424
                S WGA+LSAC      ++G++AA +  EL+  N   YV L  +Y      D +  
Sbjct: 372 MGPCASAWGAVLSACATHNNVDVGEIAAYRLFELEEDNASNYVTLCGIYDAVGQLDGVAG 431

Query: 425 LRELMKEKGLKKDVGCSWIEVTG 447
           LR  M+E G+ K  GCSW++V G
Sbjct: 432 LRSRMRELGMVKTPGCSWVDVKG 454



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 138/310 (44%), Gaps = 24/310 (7%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+       G L    + + L+ LY +   +  A  +FD +P  +    N LL+    A 
Sbjct: 27  QLHVQAIVRGHLPQATLETDLVLLYCRCAALPCARKVFDAMPSPSMHAYNILLA----AS 82

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                LEL+  + A G   D + + A LRACA L     G  +H + + +   LGN V +
Sbjct: 83  PPRAALELLSGLIAAGFRPDRYAVPAALRACAELQDPLLGAVLHGFAV-QFGFLGN-VVV 140

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY- 285
            S+L++MY K GL+  A +VF+           KD V+W  M+  Y R G   E ++++ 
Sbjct: 141 SSALLDMYAKSGLLDNAARVFDEMPE-------KDSVVWNCMVTAYARAGMAAETLEIFR 193

Query: 286 --EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
             +  ++N  + D  +  +V++AC   G++  G E    MV     +      + L+D+ 
Sbjct: 194 RAQVEVVNMAR-DLRSVPSVLNACGKEGELMKGREIHGRMVRCLAFDSDVPIGNALIDMY 252

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPH 401
            + G +D +  +   ML+R     +V  W  L+S    H  GK  L       +  + P+
Sbjct: 253 AKCGHVDASRAVFAGMLER-----NVVSWSTLISCYGVHGKGKEALRIYKEMLSQRVKPN 307

Query: 402 NVGIYVMLSN 411
            +    +LS+
Sbjct: 308 GITFMSVLSS 317


>gi|225216882|gb|ACN85180.1| EMB2261 putative [Oryza nivara]
 gi|225216899|gb|ACN85196.1| EMB2261 putative [Oryza rufipogon]
          Length = 615

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 216/394 (54%), Gaps = 16/394 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  +IS F RN     A++ F S + ++G+  D     S +TA  + K    G+Q  A V
Sbjct: 212 YTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQV 271

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G   +V V S+ +D+YAK  L+ +A  +FD + V+N V   ALL GYC+   +   +
Sbjct: 272 VTRGLCGNVIVESSTLDMYAKCGLMVEAHKVFDRMQVRNEVSRCALLGGYCQNGEYEKVI 331

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
            L R M     D D ++L  +LRACAGLS+ + G+++H   +R       DV ++S+L++
Sbjct: 332 ALFREMDKE--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAG--WRDVVVESALVD 387

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           +Y KCG V  A  VF       E    ++ + W +M+G + +NG+ +  I L+  M+  G
Sbjct: 388 LYAKCGAVDYAYSVF-------EASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREG 440

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            +PD ++F+ V+ ACSHTG V+ G  YF  M  DY + PG EHY+C+VDL  R   L++A
Sbjct: 441 PRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 500

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
             LIN+   R    +  S+W  +L A       ++ +  ++K +EL+P     Y++L N+
Sbjct: 501 EDLINKSPFR----NDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENV 556

Query: 413 YAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           Y     W++  ++R LM+ + +KK+ G SW++  
Sbjct: 557 YRTVGRWEDALEIRRLMESRKVKKEPGMSWVDAN 590



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 41/370 (11%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTY 87
           R  ++L         L  R+ +  + +++ F R G P  AL +   M       +  + +
Sbjct: 85  RLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRDMLAGADDDVSPNAH 144

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           AL +++ A   ++D   G  +   V   G+     V S+L+D+Y  +    DA  +F+E+
Sbjct: 145 ALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEM 204

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFG 206
              + +C  +L+S +     +   +   R M  + G+  D  T  +++ A         G
Sbjct: 205 RAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQG 264

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           RQ HA ++ +   L  +V ++SS ++MY KCGL+ +A +VF+    R E       V   
Sbjct: 265 RQAHAQVVTR--GLCGNVIVESSTLDMYAKCGLMVEAHKVFDRMQVRNE-------VSRC 315

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE---YFEWM 323
           ++LG Y +NG +++VI L+    M+    D  +  TV+ AC+    VK G E    F  M
Sbjct: 316 ALLGGYCQNGEYEKVIALFRE--MDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRM 373

Query: 324 V--HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI-----------NEML----DRGHGS 366
               D  +E      S LVDL  + G +D A+ +            N M+      GHG 
Sbjct: 374 AGWRDVVVE------SALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGE 427

Query: 367 SSVSMWGALL 376
            +++++  ++
Sbjct: 428 RAINLFNRMV 437



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 16/220 (7%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSG 161
           R G  +     ++G L+  ++ +AL+  Y +L   +  A   FD++P ++ V  +++L+ 
Sbjct: 55  RLGCCLHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 114

Query: 162 YCEAKLWAGGLELVRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           +  A +    L  +R M A G D D       LSA ++ACA L     G  +H  ++ + 
Sbjct: 115 FLRAGMPRRALASLRDMLA-GADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVR- 172

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
              G+D  + SSL++MYG       A +VF       E     D + +TS++  + RN +
Sbjct: 173 -GFGDDGVVLSSLVDMYGHVAAPGDARKVF-------EEMRAPDGICYTSLISAFVRNDW 224

Query: 278 FKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLG 316
           F+E ++ + +ML MNG +PD   F ++++A  ++ +   G
Sbjct: 225 FEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQG 264


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 137/399 (34%), Positives = 216/399 (54%), Gaps = 14/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R    +N +I+ +   G    AL  F  M   G   +   + +  +      D   G++ 
Sbjct: 269 RTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRA 328

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           +A + +   L +V V +AL+++Y K   I +A   FD +P ++ V  + +++GY +    
Sbjct: 329 RAWIREED-LQNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRP 387

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL   M A     +  TL  +L ACA L + E G Q+  Y+  +   L +  ++ S
Sbjct: 388 HESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTS--YLGS 445

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG V +A  VFN    R+E ++   VV W SM+     NG+ ++ I LY  M
Sbjct: 446 ALIDMYTKCGHVARARSVFN----RMEQKV---VVTWNSMIRGLALNGFAEDAIALYRKM 498

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           + +G +P+EV FV +++AC+H G V  GI +FE M     + P  EH +C+VDLLC++G 
Sbjct: 499 VGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGR 558

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A+K I +M        +  +W  LLSAC      EL KLAA K + L+P+N  IYV+
Sbjct: 559 LWEAYKFICDM----EVEPNAVIWSTLLSACRAHADVELAKLAAGKLVALEPNNSSIYVL 614

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSN+YA   +W ++ ++R+LM+ K L+K    SWIE+ G
Sbjct: 615 LSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDG 653



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 125/286 (43%), Gaps = 42/286 (14%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAK------------------------LLL---- 136
           G Q   H    G L  VFV +AL+D YAK                        L+     
Sbjct: 193 GSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSK 252

Query: 137 ---IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              + +A  +FD +P + S   N++++ Y     +   L L   M   G   +  T++ +
Sbjct: 253 SGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTV 312

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
              CA     + GR+  A++  +  +L N V + ++L+EMY KC  + +A   F+    R
Sbjct: 313 FSICAKTGDLDTGRRARAWIREE--DLQN-VIVHTALMEMYVKCRAIDEARHEFDRMPRR 369

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  DVV W++M+  Y +NG   E ++L+E M     KP+EV  V V+SAC+  G  
Sbjct: 370 -------DVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 422

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           +LG E     +    L       S L+D+  + G + +A  + N M
Sbjct: 423 ELG-EQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRM 467



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 145/373 (38%), Gaps = 41/373 (10%)

Query: 64  NGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFV 123
            G+P Y                 +  CSS   + S    R     + H+     L+ +  
Sbjct: 57  RGAPCYNADAEPVPEASNTAAADHYRCSSKLPTAS----RLPSPTEPHLPAD--LARLLK 110

Query: 124 GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL 183
              L  L +       A  +FD +P   +    A LSG  +  L    +E+V  +   G 
Sbjct: 111 TRPLHALLSNASTYRAARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGG 170

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
                 +  +L++CA  +A+  G Q H + + +   +  DVF+Q++L++ Y K G +  A
Sbjct: 171 AIPSGCIPLVLKSCAQSAASCQGSQTHCHALVR--GMLGDVFVQTALVDFYAKNGDMDSA 228

Query: 244 LQVFN-------------LAGHRLEGEINKDVVL-----------WTSMLGVYGRNGYFK 279
           L  F              + G+   G++ +   L           W SM+  Y   G F+
Sbjct: 229 LMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFR 288

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E + L++ ML  G  P+ +   TV S C+ TG +  G     W + +  L+    H + L
Sbjct: 289 EALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAW-IREEDLQNVIVH-TAL 346

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF--ELGKLAAQKALE 397
           +++  +   +D+A    + M  R      V  W  +++     G+    L      KA  
Sbjct: 347 MEMYVKCRAIDEARHEFDRMPRR-----DVVAWSTMIAGYSQNGRPHESLELFERMKATN 401

Query: 398 LDPHNVGIYVMLS 410
             P+ V +  +LS
Sbjct: 402 CKPNEVTLVGVLS 414


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 228/430 (53%), Gaps = 44/430 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I+ + R G    AL  +  M V GI  D   +   +++   ++D   G++ 
Sbjct: 171 RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRES 230

Query: 109 QAHVTKSGWLSSVFVGSALIDLY-------------------------------AKLLLI 137
             ++ ++G   +V + +AL+D+Y                               A+  L+
Sbjct: 231 HCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLL 290

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
             A  +FDE+P K+ V  NA++ GY  A      L L   M A+ ++ D  T+ + L AC
Sbjct: 291 DMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSAC 350

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           + L A + G  +H Y+ +    L  +V + ++LI+MY KCG +TKA+QVF      L G 
Sbjct: 351 SQLGALDVGIWIHHYIEKH--ELSLNVALGTALIDMYAKCGKITKAIQVF----QELPG- 403

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
             ++ + WT+++     +G     I  +  M+ N   PDEV F+ ++SAC H G V+ G 
Sbjct: 404 --RNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGR 461

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           +YF  M   + L P  +HYSC+VDLL RAG L++A +LI  M       +   +WGAL  
Sbjct: 462 KYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSM----PIEADAVVWGALFF 517

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           AC   G   +G+ AA K L++DPH+ GIYV+L+N+Y +  MW E G+ R+LM+++G++K 
Sbjct: 518 ACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKT 577

Query: 438 VGCSWIEVTG 447
            GCS IEV G
Sbjct: 578 PGCSSIEVNG 587



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 182/402 (45%), Gaps = 39/402 (9%)

Query: 6   QFETGLLLICLII--FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPF--NVVISDF 61
           Q ++ ++L  LI   F S  ++ +      ++L   TN L   N RNP  F  NV I  F
Sbjct: 24  QIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNIL--FNTRNPNTFSWNVAIRGF 81

Query: 62  CRNGSPLYALKTFS-FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
             + +P  A+  +   +   G   D Y       A   +   R G ++  HV   G+ S 
Sbjct: 82  LDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSD 141

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +FV +A+I L      +  A  MFD+  V++ V  N++++GY         L   R M  
Sbjct: 142 IFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKV 201

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  D  T+  ++ +CA L   + GR+ H Y+      L   V + ++L++MY KCG +
Sbjct: 202 EGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL--TVPLANALMDMYMKCGNL 259

Query: 241 TKALQVFN-------------LAGHRLEGEI-----------NKDVVLWTSMLGVYGRNG 276
             A ++F+             + G+   G +           +KDVV W +M+G Y    
Sbjct: 260 ESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHAN 319

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
             KE + L+  M      PDEV  V+ +SACS  G + +GI +    +  ++L       
Sbjct: 320 RGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGI-WIHHYIEKHELSLNVALG 378

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + L+D+  + G++ KA ++  E+     G +S++ W A++S 
Sbjct: 379 TALIDMYAKCGKITKAIQVFQEL----PGRNSLT-WTAIISG 415


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 134/400 (33%), Positives = 210/400 (52%), Gaps = 13/400 (3%)

Query: 46   LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
            L  RN + +  +I  F   G    A + F  M   G         S L A  S      G
Sbjct: 648  LRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEG 707

Query: 106  KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            K+V AH+  SG+     VG+ALI  Y+K   + DA  +FD++P ++ +  N +++GY + 
Sbjct: 708  KKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQN 767

Query: 166  KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             L    L+    M   G+  + F+  ++L AC+  SA E G++VHA ++++   +  DV 
Sbjct: 768  GLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKR--KMQGDVR 825

Query: 226  MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
            + ++LI MY KCG + +A +VF       +    K+VV W +M+  Y ++G   + +  +
Sbjct: 826  VGAALISMYAKCGSLEEAQEVF-------DNFTEKNVVTWNAMINAYAQHGLASKALDFF 878

Query: 286  EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
              M   G KPD   F +++SAC+H+G V  G   F  +   + L P  EHY CLV LL R
Sbjct: 879  NCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGR 938

Query: 346  AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
            AG   +A  LIN+M          ++W  LL AC   G   L + AA  AL+L+  N  +
Sbjct: 939  AGRFQEAETLINQM----PFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAV 994

Query: 406  YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            YV+LSN+YA    WD++ ++R +M+ +G++K+ G SWIEV
Sbjct: 995  YVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEV 1034



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 175/351 (49%), Gaps = 19/351 (5%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
             L+    R+ + +N +I+   ++G    A + +  M   G+ ++     S L A ++ K
Sbjct: 340 QALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSK 399

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
               G+ + +H+++ G  S V +G++LI +YA+   +  A  +F+ +P ++ +  NA+++
Sbjct: 400 ALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIA 459

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY   +     ++L + M + G+     T   LL AC   SA   G+ +H  ++R    +
Sbjct: 460 GYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS--GI 517

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            ++  + ++L+ MY +CG + +A  VF       EG   +D++ W SM+  + ++G ++ 
Sbjct: 518 KSNGHLANALMNMYRRCGSIMEAQNVF-------EGTRARDIISWNSMIAGHAQHGSYEA 570

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
             KL+  M   G +PD++ F +V+  C +   ++LG +    ++ +  L+      + L+
Sbjct: 571 AYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ-IHMLIIESGLQLDVNLGNALI 629

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK----FEL 387
           ++  R G L  A+++ + +  R     +V  W A++    D G+    FEL
Sbjct: 630 NMYIRCGSLQDAYEVFHSLRHR-----NVMSWTAMIGGFADQGEDRKAFEL 675



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           L  + T   S+ +A   K++ A + ++G    +F+ + LI++Y K   + DA  +F ++P
Sbjct: 88  LVQNCTRKRSLAEA---KRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMP 144

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
            ++ +  N+L+S Y +        +L   M   G      T  ++L AC   +  E+G++
Sbjct: 145 RRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKK 204

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +H+ +I        D  +Q+SL+ MYGKC  +  A QVF+       G   +DVV + +M
Sbjct: 205 IHSKIIE--AGYQRDPRVQNSLLNMYGKCEDLPSARQVFS-------GIYRRDVVSYNTM 255

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           LG+Y +  Y +E I L+  M   G  PD+V ++ ++ A +    +  G    +  V++  
Sbjct: 256 LGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNE-G 314

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           L       + L  +  R G++  A + +    DR      V ++ AL++A    G +E
Sbjct: 315 LNSDIRVGTALATMFVRCGDVAGAKQALEAFADR-----DVVVYNALIAALAQHGHYE 367



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 168/368 (45%), Gaps = 29/368 (7%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLP-YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           +HA   E G   +   IF S L++  Y  CR   ++         +  R+ + +N +IS 
Sbjct: 104 IHAQMVEAG---VGPDIFLSNLLINMYVKCR---SVSDAHQVFLKMPRRDVISWNSLISC 157

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + + G    A + F  M   G         S LTA  S  +  +GK++ + + ++G+   
Sbjct: 158 YAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRD 217

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
             V ++L+++Y K   +  A  +F  I  ++ V  N +L  Y +       + L   M +
Sbjct: 218 PRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSS 277

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  D  T   LL A    S  + G+++H   + +   L +D+ + ++L  M+ +CG V
Sbjct: 278 EGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNE--GLNSDIRVGTALATMFVRCGDV 335

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A Q        LE   ++DVV++ +++    ++G+++E  + Y  M  +G   +   +
Sbjct: 336 AGAKQA-------LEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTY 388

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS------CLVDLLCRAGELDKAWK 354
           ++V++ACS +  +  G      ++H +  E G  H S       L+ +  R G+L +A +
Sbjct: 389 LSVLNACSTSKALGAG-----ELIHSHISEVG--HSSDVQIGNSLISMYARCGDLPRARE 441

Query: 355 LINEMLDR 362
           L N M  R
Sbjct: 442 LFNTMPKR 449



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 157/338 (46%), Gaps = 15/338 (4%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N  +    R+ + +N +I+   ++GS   A K F  M   G+  D     S L    + +
Sbjct: 542 NVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPE 601

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
               G+Q+   + +SG    V +G+ALI++Y +   + DA  +F  +  +N +   A++ 
Sbjct: 602 ALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIG 661

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           G+ +        EL   M   G      T S++L+AC   +  + G++V A+++     L
Sbjct: 662 GFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYEL 721

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             D  + ++LI  Y K G +T A +VF+          N+D++ W  M+  Y +NG    
Sbjct: 722 --DTGVGNALISAYSKSGSMTDARKVFDKMP-------NRDIMSWNKMIAGYAQNGLGGT 772

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            ++    M   G   ++ +FV++++ACS    ++ G      +V   K++      + L+
Sbjct: 773 ALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIV-KRKMQGDVRVGAALI 831

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            +  + G L++A ++ +   ++     +V  W A+++A
Sbjct: 832 SMYAKCGSLEEAQEVFDNFTEK-----NVVTWNAMINA 864


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 153/482 (31%), Positives = 239/482 (49%), Gaps = 58/482 (12%)

Query: 1   NVHAHQFETGLL---LICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPF--N 55
            +HA    TG+     +   I     + P+ +  + + L        F   R P  F  N
Sbjct: 53  QIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFL--------FYRIRKPDIFIAN 104

Query: 56  VVISDFCRNGSPLYALKTFSFMHVHGI-FLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
            +I  +  + +P+ A+  +S M    + F D +     L A + +   R G+ + +HV K
Sbjct: 105 TLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFK 164

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            GW S V V + L+ +YA   LI  A L+FD  P  +    N ++ GY +  ++     +
Sbjct: 165 LGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRM 224

Query: 175 VRLMP----------------------ALGLDYDHF---------TLSALLRACAGLSAA 203
              MP                       LGL  D            L   L ACA L A 
Sbjct: 225 FEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAM 284

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           E G+ +  YM RK  N+   V + ++LI+MY KCG V +AL+VF    H+++    K+V+
Sbjct: 285 EQGQWIERYMERK--NVRLTVRLGTALIDMYSKCGSVERALEVF----HKMK---EKNVL 335

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W++M+     NG  K+ + L+  M M G KP+EV F+ +++ACSH+  V  G  +F  M
Sbjct: 336 AWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSM 395

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
              Y L+P   H+ C+VDL  RAG LD+A  +I  M  + +     ++WGALL+AC   G
Sbjct: 396 TSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNS----AIWGALLNACRIHG 451

Query: 384 KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
             ELG+   ++ LELDP++ G YV+LSN+YA    WD + +LR +M+E+ + K  GCS+I
Sbjct: 452 DTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFI 511

Query: 444 EV 445
           ++
Sbjct: 512 DL 513


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 206/372 (55%), Gaps = 14/372 (3%)

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M   G+  DTY   S L A  S +    G+Q      K+G     +V   LI++YA+
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAE 185

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A +MFD +  +  V  NA+++    + L    L L R M A GL     TL ++
Sbjct: 186 CGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISV 245

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA L A E GR +H Y IRK   L + V + ++LI+MY KCG +  A+ VF      
Sbjct: 246 LSACALLGALELGRWIHDY-IRK-MRLDSLVKVNTALIDMYAKCGSLEDAIGVF------ 297

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
            +   ++D   W+ M+  Y  +GY +E I ++E M   G KPD+V F+ V+ ACSH+G V
Sbjct: 298 -QDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMV 356

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G++YF+ M  +Y +  G +HY C+ DLL R+G+L++A+K I+E+  +     +  +W 
Sbjct: 357 SEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIK----PTAILWR 411

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
            LLSAC   G  ++GK   ++ LELD  + G YV+ SNL A    W+E+  +R+LM EKG
Sbjct: 412 TLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKG 471

Query: 434 LKKDVGCSWIEV 445
           + K  GCS IE+
Sbjct: 472 VVKVPGCSSIEI 483


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 149/404 (36%), Positives = 214/404 (52%), Gaps = 23/404 (5%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + ++  IS + + G    AL     M   GI  +   L S L+   SV     GK++  +
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 112 -------VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSVCANALLSGY 162
                  + K+G      V + LID+YAK   +  A  MFD +  K  + V    ++ GY
Sbjct: 391 AIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 163 CEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            +       LEL+  M         + FT+S  L ACA L+A   G+Q+HAY +R   N 
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQN- 509

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
              +F+ + LI+MY KCG +  A  VF       +  + K+ V WTS++  YG +GY +E
Sbjct: 510 AVPLFVSNCLIDMYAKCGDIGDARLVF-------DNMMEKNEVTWTSLMTGYGMHGYGEE 562

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            + ++E M   G K D V  + V+ ACSH+G +  G+EYF  M  D+ + PGPEHY+CLV
Sbjct: 563 ALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLV 622

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RAG L+ A +LI EM           +W ALLS C   GK ELG+ AA+K  EL  
Sbjct: 623 DLLGRAGRLNAALRLIEEM----PMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELAS 678

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +N G Y +LSN+YA    W ++ ++R LM+ KG+KK  GCSW+E
Sbjct: 679 NNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVE 722



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 187/421 (44%), Gaps = 58/421 (13%)

Query: 37  GTLTNCLKFLNPR---NPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALCSS 92
           G+L++  K  +     + + +N +I  + + G P  AL+ FS M +  G   D   L + 
Sbjct: 176 GSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNV 235

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L    SV     GKQ       S  + ++FVG+ L+D+YAK  ++ +A  +F  +PVK+ 
Sbjct: 236 LPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDV 295

Query: 153 VCANALLSGYC----------------EAKL------WAGGLE-------------LVRL 177
           V  NA+++GY                 E K+      W+  +              + R 
Sbjct: 296 VSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQ 355

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL-----GNDVFMQSSLIE 232
           M + G+  +  TL ++L  CA + A   G+++H Y I+   +L     G++  + + LI+
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLID 415

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY KC  V  A  +F+    +      +DVV WT M+G Y ++G   + ++L   M    
Sbjct: 416 MYAKCKKVDIARAMFDSLSPK-----ERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470

Query: 293 --TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
             T+P+       + AC+    + +G +   + + + +        +CL+D+  + G++ 
Sbjct: 471 CQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIG 530

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            A  + + M+++   +     W +L++    H  G+  LG     + +      V + V+
Sbjct: 531 DARLVFDNMMEKNEVT-----WTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVV 585

Query: 409 L 409
           L
Sbjct: 586 L 586



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 179/405 (44%), Gaps = 54/405 (13%)

Query: 35  NLGTLTNCLKFLNPRNP-----LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYAL 89
           +LG L++ +  L    P       +N +I  +  NG     L +F  MH      D Y  
Sbjct: 71  SLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTF 130

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
                A   +   R G    A    +G++S+VFVG+AL+ +Y++   + DA  +FDE+PV
Sbjct: 131 PFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPV 190

Query: 150 KNSVCANALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
            + V  N+++  Y +       LE+  ++    G   D  TL  +L  CA +     G+Q
Sbjct: 191 WDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQ 250

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGH--- 252
            H + +     +  ++F+ + L++MY K G++ +A  VF+             +AG+   
Sbjct: 251 FHGFAVTS--EMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQI 308

Query: 253 -------RL-----EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
                  RL     E +I  DVV W++ +  Y + G   E + +   ML +G KP+EV  
Sbjct: 309 GRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL 368

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLE-----PGPEH--YSCLVDLLCRAGELDKAW 353
           ++V+S C+  G +  G E   + +  Y ++      G E+   + L+D+  +  ++D A 
Sbjct: 369 ISVLSGCASVGALMHGKEIHCYAI-KYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIAR 427

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
            + + +  +      V  W  ++      G        A KALEL
Sbjct: 428 AMFDSLSPK---ERDVVTWTVMIGGYSQHGD-------ANKALEL 462


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 141/403 (34%), Positives = 224/403 (55%), Gaps = 16/403 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RN + +N +I+ F  NG  L A + F  M + G+ L      + +    ++K+  F 
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI-PVKNSVCANALLSGYCE 164
           KQ+   V K+G    + + +AL+  Y+K   I DA  +F  +  V+N V   A++SGY +
Sbjct: 314 KQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQ 373

Query: 165 AKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGN 222
                  + L  ++    G++ + FT S++L ACA  +A+ E G+Q H+  I+      N
Sbjct: 374 NGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS--GFSN 431

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            + + S+L+ MY K G +  A +VF       + ++++D+V W SM+  Y ++G  K+ +
Sbjct: 432 ALCVSSALVTMYAKRGNIESANEVF-------KRQVDRDLVSWNSMISGYAQHGCGKKSL 484

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           K++E M     + D + F+ VISAC+H G V  G  YF+ MV DY + P  EHYSC+VDL
Sbjct: 485 KIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDL 544

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
             RAG L+KA  LIN+M       +  ++W  LL+AC      +LG+LAA+K + L P +
Sbjct: 545 YSRAGMLEKAMDLINKM----PFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQD 600

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              YV+LSN+YA    W E  ++R+LM  K +KK+ G SWIEV
Sbjct: 601 SAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEV 643



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 183/361 (50%), Gaps = 28/361 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +  +++ + +NG    ALK FS M + GI  + +   + L    +      G QV
Sbjct: 156 KNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQV 215

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V KSG  S++FVG++++++Y+K L++ DA+ +FD +  +N+V  N++++G+    L 
Sbjct: 216 HTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLD 275

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
               EL   M   G+       + +++ CA +    F +Q+H  +I+   +   D+ +++
Sbjct: 276 LEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF--DLNIKT 333

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+  Y KC  +  A ++F +  H ++     +VV WT+++  Y +NG     + L+  M
Sbjct: 334 ALMVAYSKCSEIDDAFKLFCMM-HGVQ-----NVVSWTAIISGYVQNGRTDRAMNLFCQM 387

Query: 289 LM-NGTKPDEVAFVTVISACSH-TGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDL 342
               G +P+E  F +V++AC+  T  V+ G ++     H   ++ G  +  C    LV +
Sbjct: 388 RREEGVEPNEFTFSSVLNACAAPTASVEQGKQF-----HSCSIKSGFSNALCVSSALVTM 442

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGK--FELGKLAAQKALEL 398
             + G ++ A ++    +DR      +  W +++S  A H CGK   ++ +    K LEL
Sbjct: 443 YAKRGNIESANEVFKRQVDR-----DLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLEL 497

Query: 399 D 399
           D
Sbjct: 498 D 498



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 160/334 (47%), Gaps = 22/334 (6%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N ++ +F RN     AL  F  +   G   D  +L   L     + D   GKQV     K
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIK 120

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            G++  V VG++L+D+Y K   + D E +FDE+ VKN V   +LL+GY +  L    L+L
Sbjct: 121 CGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKL 180

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              M   G+  + FT +A+L   A   A E G QVH  +I+    L + +F+ +S++ MY
Sbjct: 181 FSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS--GLDSTIFVGNSMVNMY 238

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            K  +V+ A  VF+     +E   N++ V W SM+  +  NG   E  +L+  M + G K
Sbjct: 239 SKSLMVSDAKAVFD----SME---NRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELD 350
             +  F TVI  C++  ++      F   +H   ++ G +      + L+    +  E+D
Sbjct: 292 LTQTIFATVIKLCANIKEMS-----FAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEID 346

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            A+KL   M    HG  +V  W A++S     G+
Sbjct: 347 DAFKLFCMM----HGVQNVVSWTAIISGYVQNGR 376


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 146/425 (34%), Positives = 229/425 (53%), Gaps = 19/425 (4%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           +RL++ Y  C     L    N L  +  RN + +  +IS + +N  P  A   F  M   
Sbjct: 74  TRLVIMYARC---GALEDAHNVLDGMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRA 130

Query: 81  GIFLDTYALCSSLTASTSVKDARFG--KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
           G   + + L S LT+ T  +       KQV A   K  +   +FVGS+L+D+YA+   I 
Sbjct: 131 GCEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQ 190

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           +A  +FD +P ++ V    +LSGY    L    L L R +   G+  +  T S LL A +
Sbjct: 191 EARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALS 250

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
           GLS+ ++G+QVH  ++R+   L   + +Q+SLI+MY KCG +  + +VF+    R     
Sbjct: 251 GLSSMDYGKQVHGLILRR--ELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPER----- 303

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
              VV W +ML  YGR+G   EV++L+  M  +  KPD V  + V+   SH G V  G++
Sbjct: 304 --SVVSWNAMLMGYGRHGMAYEVVQLFRFMC-DKVKPDSVTLLAVLLGYSHGGLVDEGLD 360

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            F+ +V +       +HY C++DLL R+G+L+KA  LI +M        + ++WG+LL A
Sbjct: 361 MFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKM----PFQPTRAIWGSLLGA 416

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           C       +G+  AQK  +++P N G YV+LSN+YA   MW ++ +LR+LM +K + K+ 
Sbjct: 417 CRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAARMWKDVFRLRKLMLKKTVIKEP 476

Query: 439 GCSWI 443
           G SW+
Sbjct: 477 GRSWM 481



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           +++T     +  R G+QV A +  +G+  ++++ + L+ +YA+   + DA  + D +P +
Sbjct: 40  AAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPER 99

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG--RQ 208
           N V   A++SGY + +  A   +L  +M   G + + FTL+++L +C G         +Q
Sbjct: 100 NVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQ 159

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           VHA+ I+K  N    +F+ SSL++MY +   + +A +VF++   R       DVV +T++
Sbjct: 160 VHAFAIKK--NFELHMFVGSSLLDMYARSENIQEARRVFDMLPAR-------DVVSYTTI 210

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           L  Y R G  +E + L+  +   G + ++V F  +++A S    +  G +     VH   
Sbjct: 211 LSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQ-----VHGLI 265

Query: 329 LEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           L      +    + L+D+  + G+L  + ++ + M +R     SV  W A+L
Sbjct: 266 LRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPER-----SVVSWNAML 312


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 139/424 (32%), Positives = 231/424 (54%), Gaps = 20/424 (4%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           LM+  T C+   +  +L + +  +  ++ + +  +IS + +NG    A+  FS M   G+
Sbjct: 345 LMVALTKCKEIDDAFSLFSLMHGV--QSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGV 402

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             + +   + LT    V+ A F  ++ A V K+ +  S  VG+AL+D + K+  I DA  
Sbjct: 403 KPNHFTYSTILT----VQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVK 458

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F+ I  K+ +  +A+L+GY +A       ++   +   G+  + FT  +++ AC   +A
Sbjct: 459 VFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTA 518

Query: 203 A-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
           + E G+Q HAY I+    L N + + SSL+ +Y K G +  A ++F     R       D
Sbjct: 519 SVEQGKQFHAYAIK--LRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKER-------D 569

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           +V W SM+  Y ++G  K+ ++++E M     + D + F+ VISAC+H G V  G  YF 
Sbjct: 570 LVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFN 629

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            M++D+ + P  EHYSC++DL  RAG L KA  +IN M        + ++W  +L+A   
Sbjct: 630 IMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGM----PFPPAATVWRIVLAASRV 685

Query: 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCS 441
               ELGKLAA+K + L+P +   YV+LSN+YA    W E   +R+LM ++ +KK+ G S
Sbjct: 686 HRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYS 745

Query: 442 WIEV 445
           WIEV
Sbjct: 746 WIEV 749



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 165/367 (44%), Gaps = 20/367 (5%)

Query: 11  LLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYA 70
           LL   ++   +R +L  +  R  + L   T  L+ L   N L F      + R      A
Sbjct: 33  LLQSHVVALNARTLLRDSDPRFAQQLFDQTP-LRDLKQHNQLLFR-----YSRCDQTQEA 86

Query: 71  LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL 130
           L  F  ++  G+  D+Y +   L+      +   G+QV     K G +  + VG++L+D+
Sbjct: 87  LHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDM 146

Query: 131 YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
           Y K   + D   +FDE+  ++ V  N+LL+GY   +      EL  LM   G   D++T+
Sbjct: 147 YTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTV 206

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           S ++ A A   A   G Q+HA +++       +  + +SLI M  K G++  A  VF+  
Sbjct: 207 STVIAALANQGAVAIGMQIHALVVK--LGFETERLVCNSLISMLSKSGMLRDARVVFD-- 262

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
              +E   NKD V W SM+  +  NG   E  + +  M + G KP    F +VI +C+  
Sbjct: 263 --NME---NKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASL 317

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
            ++ L +           L       + L+  L +  E+D A+ L + M    HG  SV 
Sbjct: 318 KELGL-VRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLM----HGVQSVV 372

Query: 371 MWGALLS 377
            W A++S
Sbjct: 373 SWTAMIS 379



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 167/355 (47%), Gaps = 28/355 (7%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +N +I+    NG  L A +TF+ M + G         S + +  S+K+    
Sbjct: 264 MENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLV 323

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVCANALLSGYCE 164
           + +     KSG  ++  V +AL+    K   I DA  +F  +  V++ V   A++SGY +
Sbjct: 324 RVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQ 383

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  + L  LM   G+  +HFT S +L     +  A F  ++HA +I+   N     
Sbjct: 384 NGDTDQAVNLFSLMRREGVKPNHFTYSTIL----TVQHAVFISEIHAEVIK--TNYEKSS 437

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + ++L++ + K G ++ A++VF L          KDV+ W++ML  Y + G  +E  K+
Sbjct: 438 SVGTALLDAFVKIGNISDAVKVFELIE-------TKDVIAWSAMLAGYAQAGETEEAAKI 490

Query: 285 YEAMLMNGTKPDEVAFVTVISACSH-TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           +  +   G KP+E  F ++I+AC+  T  V+ G ++  + +   +L       S LV L 
Sbjct: 491 FHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAI-KLRLNNALCVSSSLVTLY 549

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
            + G ++ A ++     +R      +  W +++S     G+       A+KALE+
Sbjct: 550 AKRGNIESAHEIFKRQKER-----DLVSWNSMISGYAQHGQ-------AKKALEV 592


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 141/414 (34%), Positives = 233/414 (56%), Gaps = 18/414 (4%)

Query: 35  NLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           + G L +C K    +  +  L +N +IS F RNG P  AL  F  M   G+  D+Y+L S
Sbjct: 547 DTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLAS 606

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           SL+A  ++  ++ G Q+  ++ K+G  +  FV +ALID+YAK   +H A  MF++I  K+
Sbjct: 607 SLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKS 665

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N+++ G+ +       + L   M    +  D  T  ++++AC+ L   E G+ VH 
Sbjct: 666 LVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHH 725

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            +I     L  D ++ ++L +MY KCG +  A  VF+    R        +V W+ M+  
Sbjct: 726 KLI--MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSER-------SIVSWSVMIAG 776

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           YG +G     I L+  ML +G KP+++ F+ ++SACSH G V+ G  YF  M  ++ +EP
Sbjct: 777 YGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGVEP 835

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
             +H++C+VDLL RAG+L+ A+++I  +       ++ S+WGALL+ C    + ++ K  
Sbjct: 836 KHDHFACMVDLLSRAGDLNGAYQIITSL----PFPANSSIWGALLNGCRIHKRIDIIKSI 891

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            +  L++D  + G Y +LSN+YA+   WD+ G++R +MK KGL+K  G S IE+
Sbjct: 892 EKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEI 945



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 168/370 (45%), Gaps = 56/370 (15%)

Query: 63  RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK--------QVQAHVTK 114
           +NG     L  FS M    +  D+  + S   A + +   R G+         V   V +
Sbjct: 468 KNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIR 527

Query: 115 SGWLSSV-FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
                 + F+G AL++LYA    + D   +F+ I  K  +  N L+S +         L 
Sbjct: 528 RAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALL 587

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M   GL  D ++L++ L AC  +S ++ G Q+H Y+I K  N  ND F+Q++LI+M
Sbjct: 588 LFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYII-KTGNF-ND-FVQNALIDM 644

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V  A ++F       E    K +V W SM+  + +NGY  E I L++ M MN  
Sbjct: 645 YAKCGFVHSANKMF-------EKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCV 697

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD---YKLEPGPEHYSCLVDLLCRAGELD 350
           K D++ F++VI ACSH G ++ G    +W+ H    Y L       + L D+  + GEL 
Sbjct: 698 KMDKLTFLSVIQACSHLGYLEKG----KWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQ 753

Query: 351 KAWKLINEMLDR---------------GHGSSSVSMWGAL---------------LSACH 380
            A  + + M +R               G  ++++S++  +               LSAC 
Sbjct: 754 MAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACS 813

Query: 381 DCGKFELGKL 390
             G  E GKL
Sbjct: 814 HAGAVEEGKL 823



 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT-------SMLGVYGRN 275
           D FM   LI+ Y   G   +A+ +++   ++ + +I+  V             L V G+N
Sbjct: 410 DSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKN 469

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           G   E + ++  M+    +PD V  ++V  ACS  G ++LG
Sbjct: 470 GQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLG 510


>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 466

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 211/398 (53%), Gaps = 13/398 (3%)

Query: 51  PLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           P+ F  N ++  + R+ SPL +++ +  M    +  D Y L   + A+  + D   GKQ+
Sbjct: 79  PIAFLWNNIMRSYIRHDSPLDSVQVYLGMVRSNVLPDRYTLPIVIKAAVQIHDFPLGKQL 138

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +   + G++   F  S  I LY K   + +A  +FDE P +     NA++ G   A   
Sbjct: 139 HSVAVRLGFVGDEFCESGFITLYCKAGELENARNVFDENPERKLGSWNAIIGGLNHAGRA 198

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +E+   M   G + D FT+ ++  AC GL       Q+H  +++      +DV M +
Sbjct: 199 NEAVEMFMEMRRSGFEPDDFTMVSVTSACGGLGDLNLAFQLHKCVLQAKTEEKSDVMMMN 258

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MYGKCG +  A+QVF     R       +VV W+SM+  Y  NG   E ++ +  M
Sbjct: 259 SLIDMYGKCGRMDFAIQVFEEMPQR-------NVVSWSSMITGYAANGNTLEALECFRQM 311

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G +P+++ FV V+SAC H G V+ G  YF  M  ++ LEPG  HY C+VDLL R G+
Sbjct: 312 REFGVRPNKITFVGVLSACVHGGLVEEGKAYFAMMKSEFNLEPGLSHYGCIVDLLSRDGQ 371

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A K++ EM  +     +V +WG L+  C   G  E+ +  A   +EL+P N G+YV+
Sbjct: 372 LKEAKKVVEEMPMK----PNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVV 427

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           L+N+YA   MW ++ ++R++MKEK + K    S+   T
Sbjct: 428 LANVYALKGMWKDVERVRKVMKEKKVAKIPAYSYASTT 465



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 24/146 (16%)

Query: 252 HRLEGEINKDVVL--------WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
            R+ G+I +  +L        W +++  Y R+    + +++Y  M+ +   PD      V
Sbjct: 63  RRIHGDIFRSCILDQYPIAFLWNNIMRSYIRHDSPLDSVQVYLGMVRSNVLPDRYTLPIV 122

Query: 304 ISACSHTGQVKLGIEYFEWMVH-----DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           I A        LG +     V      D   E G       + L C+AGEL+ A  + +E
Sbjct: 123 IKAAVQIHDFPLGKQLHSVAVRLGFVGDEFCESG------FITLYCKAGELENARNVFDE 176

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGK 384
             +R  GS     W A++   +  G+
Sbjct: 177 NPERKLGS-----WNAIIGGLNHAGR 197


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 148/444 (33%), Positives = 234/444 (52%), Gaps = 18/444 (4%)

Query: 3   HAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFC 62
            AH F     L  L+   + ++  Y  C    ++        ++  +N + +N +I  + 
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKC---GDIRAARVVFDWMPTKNSVSWNAMIDGYA 238

Query: 63  RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF 122
           +NG    AL  F+ M   G+ +   ++ ++L A   +     G +V   + + G  S+V 
Sbjct: 239 QNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVS 298

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           V +ALI +Y+K   +  A  +FDE+  +  V  NA++ G  +       + L   M    
Sbjct: 299 VMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLEN 358

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D FTL +++ A A +S     R +H Y IR   +L  DV++ ++LI+MY KCG V  
Sbjct: 359 VKPDSFTLVSVIPALADISDPLQARWIHGYSIR--LHLDQDVYVLTALIDMYAKCGRVNI 416

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A  +FN A  R        V+ W +M+  YG +G+ K  ++L+E M   G  P+E  F++
Sbjct: 417 ARILFNSARER-------HVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLS 469

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM-LD 361
           V+SACSH G V  G EYF  M  DY LEPG EHY  +VDLL RAG+LD+AW  I +M +D
Sbjct: 470 VLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMD 529

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
            G     +S++GA+L AC      EL + +AQK  EL P     +V+L+N+YA   MW +
Sbjct: 530 PG-----LSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKD 584

Query: 422 IGQLRELMKEKGLKKDVGCSWIEV 445
           + ++R  M++ GL+K  G S I++
Sbjct: 585 VARVRTAMEKNGLQKTPGWSIIQL 608



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 175/394 (44%), Gaps = 35/394 (8%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLD 85
           Y  CR   +   + + +     R+ + +N +++ + RNG    A++    M    G   D
Sbjct: 104 YAKCRRPADARRVFDRMPV---RDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPD 160

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           +  L S L A  + +     ++  A   +SG    V V +A++D Y K   I  A ++FD
Sbjct: 161 SITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFD 220

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
            +P KNSV  NA++ GY +       L L   M   G+D    ++ A L+AC  L   + 
Sbjct: 221 WMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE 280

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G +VH  ++R    L ++V + ++LI MY KC  V  A  VF+    R +       V W
Sbjct: 281 GMRVHELLVR--IGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ-------VSW 331

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            +M+    +NG  ++ ++L+  M +   KPD    V+VI A +             W +H
Sbjct: 332 NAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQA----RW-IH 386

Query: 326 DY--KLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            Y  +L    + Y  + L+D+  + G ++ A  L N   +R      V  W A++   H 
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARER-----HVITWNAMI---HG 438

Query: 382 CGKFELGKLAAQ-----KALELDPHNVGIYVMLS 410
            G    GK A +     K++ + P+      +LS
Sbjct: 439 YGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLS 472



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 142/315 (45%), Gaps = 16/315 (5%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           AL  F  M   G         S L    +  D   G+ V A +   G  S     +AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMPALGLDYDHF 188
           +YAK     DA  +FD +PV++ V  NAL++GY    L    +E+ VR+    G   D  
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           TL ++L ACA   A    R+ HA+ IR    L   V + +++++ Y KCG +  A  VF+
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRS--GLEELVNVATAILDAYCKCGDIRAARVVFD 220

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                      K+ V W +M+  Y +NG  +E + L+  M+  G    +V+ +  + AC 
Sbjct: 221 WMP-------TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACG 273

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
             G +  G+   E +V    L+      + L+ +  +   +D A  + +E LDR    + 
Sbjct: 274 ELGCLDEGMRVHELLVR-IGLDSNVSVMNALITMYSKCKRVDLASHVFDE-LDR---RTQ 328

Query: 369 VSMWGALLSACHDCG 383
           VS W A++  C   G
Sbjct: 329 VS-WNAMILGCAQNG 342



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 108/264 (40%), Gaps = 52/264 (19%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T ++LL+ CA       GR VHA +  +   + ++    ++L  MY KC     A +VF+
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAAR--GIDSEALAATALANMYAKCRRPADARRVFD 118

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISAC 307
               R       D V W +++  Y RNG  +  +++   M    G +PD +  V+V+ AC
Sbjct: 119 RMPVR-------DRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPAC 171

Query: 308 -----------SHTGQVKLGIE------------------------YFEWMVHDYKLEPG 332
                      +H   ++ G+E                         F+WM     +   
Sbjct: 172 ANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVS-- 229

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
              ++ ++D   + G+  +A  L N M++ G   + VS+  A L AC + G  + G    
Sbjct: 230 ---WNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAA-LQACGELGCLDEGMRVH 285

Query: 393 QKALELD-PHNVGIYVMLSNLYAK 415
           +  + +    NV +   L  +Y+K
Sbjct: 286 ELLVRIGLDSNVSVMNALITMYSK 309


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 216/431 (50%), Gaps = 48/431 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N ++S   R+G    A+     MH  G   D   +  +L+A   V D   G+Q+ 
Sbjct: 120 NVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLH 179

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL-- 167
            +V K+G      V +ALID+Y K     +   +FDE    +    NAL++G        
Sbjct: 180 GYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVS 239

Query: 168 --------------------WAG-------------GLELVRLMPALGLDYDHFTLSALL 194
                               W                ++L R M + G++ +  T+  +L
Sbjct: 240 EALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVL 299

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            A A ++A   GR  H + +RK     +D+++ S+L++MY KCG V  A  +F    +R 
Sbjct: 300 PAFANIAALMHGRSAHCFSLRK--GFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR- 356

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                 +VV W +M+G Y  +G  +  ++L+ +M  +  KPD V F  V+ ACS  G  +
Sbjct: 357 ------NVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTE 410

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G  YF  M H + + P  EHY+C+V LL RAG+LD A+ +IN+M     G     +WG+
Sbjct: 411 EGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDG----CIWGS 466

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL +C   G   L ++AA+   +L+P N G YV+LSN+YA   MWD + +LR++MK  GL
Sbjct: 467 LLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGL 526

Query: 435 KKDVGCSWIEV 445
           KK+ GCSWIE+
Sbjct: 527 KKEKGCSWIEI 537



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           +  D F+ SSL+  Y + G    A  V       L+G  ++ VV W++++  +  +G  +
Sbjct: 51  VSRDAFVASSLLHAYLRFGATADARSV-------LDGMPHRTVVGWSALIAAHASHGDAE 103

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
               L E M  +G +P+ + +  ++S  + +G+ +  +     M H     P     SC 
Sbjct: 104 GAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRM-HGEGFLPDATGVSCA 162

Query: 340 VDLLCRAGEL 349
           +  +   G++
Sbjct: 163 LSAVGDVGDV 172


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 148/444 (33%), Positives = 234/444 (52%), Gaps = 18/444 (4%)

Query: 3   HAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFC 62
            AH F     L  L+   + ++  Y  C    ++        ++  +N + +N +I  + 
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKC---GDIRAARVVFDWMPTKNSVSWNAMIDGYA 238

Query: 63  RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF 122
           +NG    AL  F+ M   G+ +   ++ ++L A   +     G +V   + + G  S+V 
Sbjct: 239 QNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVS 298

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           V +ALI +Y+K   +  A  +FDE+  +  V  NA++ G  +       + L   M    
Sbjct: 299 VMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLEN 358

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D FTL +++ A A +S     R +H Y IR   +L  DV++ ++LI+MY KCG V  
Sbjct: 359 VKPDSFTLVSVIPALADISDPLQARWIHGYSIR--LHLDQDVYVLTALIDMYAKCGRVNI 416

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A  +FN A  R        V+ W +M+  YG +G+ K  ++L+E M   G  P+E  F++
Sbjct: 417 ARILFNSARER-------HVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLS 469

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM-LD 361
           V+SACSH G V  G EYF  M  DY LEPG EHY  +VDLL RAG+LD+AW  I +M +D
Sbjct: 470 VLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMD 529

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
            G     +S++GA+L AC      EL + +AQK  EL P     +V+L+N+YA   MW +
Sbjct: 530 PG-----LSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKD 584

Query: 422 IGQLRELMKEKGLKKDVGCSWIEV 445
           + ++R  M++ GL+K  G S I++
Sbjct: 585 VARVRTAMEKNGLQKTPGWSIIQL 608



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 175/394 (44%), Gaps = 35/394 (8%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLD 85
           Y  CR   +   + + +     R+ + +N +++ + RNG    A++    M    G   D
Sbjct: 104 YAKCRRPADARRVFDRMPV---RDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPD 160

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           +  L S L A  + +     ++  A   +SG    V V +A++D Y K   I  A ++FD
Sbjct: 161 SITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFD 220

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
            +P KNSV  NA++ GY +       L L   M   G+D    ++ A L+AC  L   + 
Sbjct: 221 WMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDE 280

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G +VH  ++R    L ++V + ++LI MY KC  V  A  VF+    R +       V W
Sbjct: 281 GMRVHELLVR--IGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ-------VSW 331

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            +M+    +NG  ++ ++L+  M +   KPD    V+VI A +             W +H
Sbjct: 332 NAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQA----RW-IH 386

Query: 326 DY--KLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            Y  +L    + Y  + L+D+  + G ++ A  L N   +R      V  W A++   H 
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARER-----HVITWNAMI---HG 438

Query: 382 CGKFELGKLAAQ-----KALELDPHNVGIYVMLS 410
            G    GK A +     K++ + P+      +LS
Sbjct: 439 YGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLS 472



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 142/315 (45%), Gaps = 16/315 (5%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           AL  F  M   G         S L    +  D   G+ V A +   G  S     +AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMPALGLDYDHF 188
           +YAK     DA  +FD +PV++ V  NAL++GY    L    +E+ VR+    G   D  
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           TL ++L ACA   A    R+ HA+ IR    L   V + +++++ Y KCG +  A  VF+
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRS--GLEELVNVATAILDAYCKCGDIRAARVVFD 220

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                      K+ V W +M+  Y +NG  +E + L+  M+  G    +V+ +  + AC 
Sbjct: 221 WMP-------TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACG 273

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
             G +  G+   E +V    L+      + L+ +  +   +D A  + +E LDR    + 
Sbjct: 274 ELGCLDEGMRVHELLVR-IGLDSNVSVMNALITMYSKCKRVDLASHVFDE-LDR---RTQ 328

Query: 369 VSMWGALLSACHDCG 383
           VS W A++  C   G
Sbjct: 329 VS-WNAMILGCAQNG 342



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 108/264 (40%), Gaps = 52/264 (19%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T ++LL+ CA       GR VHA +  +   + ++    ++L  MY KC     A +VF+
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAAR--GIDSEALAATALANMYAKCRRPADARRVFD 118

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISAC 307
               R       D V W +++  Y RNG  +  +++   M    G +PD +  V+V+ AC
Sbjct: 119 RMPVR-------DRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPAC 171

Query: 308 -----------SHTGQVKLGIE------------------------YFEWMVHDYKLEPG 332
                      +H   ++ G+E                         F+WM     +   
Sbjct: 172 ANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVS-- 229

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
              ++ ++D   + G+  +A  L N M++ G   + VS+  A L AC + G  + G    
Sbjct: 230 ---WNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAA-LQACGELGCLDEGMRVH 285

Query: 393 QKALELD-PHNVGIYVMLSNLYAK 415
           +  + +    NV +   L  +Y+K
Sbjct: 286 ELLVRIGLDSNVSVMNALITMYSK 309


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 137/411 (33%), Positives = 216/411 (52%), Gaps = 25/411 (6%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           P + + +  VI+ + + G    AL  F  M   G   +   + S L+A  S+     G +
Sbjct: 370 PLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTE 429

Query: 108 VQAHVTKSGWLS----------SVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCA 155
           + A+  K+  L+           + V +ALID+Y+K      A  +FD+IP+  +N V  
Sbjct: 430 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 489

Query: 156 NALLSGYCEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             ++ G+ +       L+L   M     G+  + +T+S +L ACA L+A   G+Q+HAY+
Sbjct: 490 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 549

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           +R      +  F+ + LI+MY KCG V  A  VF+           K  + WTSM+  YG
Sbjct: 550 LRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ-------KSAISWTSMMTGYG 602

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +G   E + +++ M   G  PD++ F+ V+ ACSH G V  G+ YF+ M  DY L P  
Sbjct: 603 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 662

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHY+C +DLL R+G LDKAW+ + +M        +  +W ALLSAC      EL + A  
Sbjct: 663 EHYACAIDLLARSGRLDKAWRTVKDM----PMEPTAVVWVALLSACRVHSNVELAEHALN 718

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           K +E++  N G Y ++SN+YA    W ++ ++R LMK+ G+KK  GCSW++
Sbjct: 719 KLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 769



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 185/419 (44%), Gaps = 63/419 (15%)

Query: 13  LICLIIFQSR------LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS 66
           LIC   F+S       L+  Y+ C   +    + + +      + + +N ++S   ++ +
Sbjct: 187 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 246

Query: 67  PLYALKTFSFMH--VH----GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
              AL  FS M   VH        D  ++ + L A  S+K     K+V  +  ++G    
Sbjct: 247 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 306

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           VFVG+ALID YAK  L+ +A  +F+ +  K+ V  NA+++GY ++  +    EL + M  
Sbjct: 307 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 366

Query: 181 LGLDYDHFTLSA-----------------------------------LLRACAGLSAAEF 205
             +  D  T +A                                   +L ACA L A   
Sbjct: 367 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 426

Query: 206 GRQVHAYMIRKC-CNLGN-------DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           G ++HAY ++ C   L N       D+ + ++LI+MY KC     A  +F+     LE  
Sbjct: 427 GTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFD--DIPLE-- 482

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN--GTKPDEVAFVTVISACSHTGQVKL 315
             ++VV WT M+G + + G   + +KL+  M+    G  P+      ++ AC+H   +++
Sbjct: 483 -ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 541

Query: 316 GIEYFEWMVHDYKLEPGPEHYS-CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           G +   +++  ++ E      + CL+D+  + G++D A  + + M  +   S +  M G
Sbjct: 542 GKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 600



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 161/356 (45%), Gaps = 50/356 (14%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+ + P   + +N++I +  + G    A+     M   G   D + L   L A   +   
Sbjct: 119 LERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSY 178

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCANALL 159
           R G      +  +G+ S+VF+ +AL+ +Y++   + +A ++FDEI    + + +  N+++
Sbjct: 179 RCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIV 238

Query: 160 SGYCEAKLWAGGLELVRLMPAL------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
           S + ++      L+L   M  +          D  ++  +L AC  L A    ++VH   
Sbjct: 239 SAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNA 298

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL-------------AGHRLEG---- 256
           IR       DVF+ ++LI+ Y KCGL+  A++VFN+             AG+   G    
Sbjct: 299 IRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEA 356

Query: 257 -----------EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
                       I  DVV WT+++  Y + G   E + L+  M+ +G+ P+ V  ++V+S
Sbjct: 357 AFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLS 416

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           AC+  G    G E     +H Y L+      +CL+ L    G  D+   + N ++D
Sbjct: 417 ACASLGAFSQGTE-----IHAYSLK------NCLLTLDNDFGGEDEDLMVYNALID 461



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 120/281 (42%), Gaps = 28/281 (9%)

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           ++S   +G+ ++  Y        A L+ + +    +V  N L+  + +       + +  
Sbjct: 92  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 151

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN-LGNDVFMQSSLIEMYG 235
            M   G   DHFTL  +L+AC  L +   G   H  +   CCN   ++VF+ ++L+ MY 
Sbjct: 152 RMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLI---CCNGFESNVFICNALVAMYS 208

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM----- 290
           +CG + +A  +F+    R       DV+ W S++  + ++      + L+  M +     
Sbjct: 209 RCGSLEEASMIFDEITQRGI----DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 264

Query: 291 -NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY--SCLVDLLCR 345
               + D ++ V ++ AC     V    E     VH   +  G  P+ +  + L+D   +
Sbjct: 265 PTNERSDIISIVNILPACGSLKAVPQTKE-----VHGNAIRNGTFPDVFVGNALIDAYAK 319

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            G ++ A K+ N M  +      V  W A+++     G FE
Sbjct: 320 CGLMENAVKVFNMMEFK-----DVVSWNAMVAGYSQSGNFE 355


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 233/431 (54%), Gaps = 46/431 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           R+ + +N +IS + + G  L AL  FS M +   +  D + L S L+A  +++    GKQ
Sbjct: 237 RDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ 296

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAK--------LLLIHD-------------------- 139
           + A++ ++   +S  VG+ALI +YAK        L++ H+                    
Sbjct: 297 IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKL 356

Query: 140 -----AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
                A  +F+++  ++ V   A++ GY +  LW   LEL RLM   G + + +TL+A+L
Sbjct: 357 GNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAML 416

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
              + L+  E G+Q+HA  I+   +    V   ++LI MY K G +  A +VF+L   + 
Sbjct: 417 SVSSSLTILEHGKQIHASAIKAGESSTPSV--TNALIAMYAKTGNINVAKRVFDLPNGK- 473

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                K++V WTSM+    ++G  KE I L+E ML  G KPD + +V V+SAC+H G V+
Sbjct: 474 -----KEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVE 528

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G +Y+  M   +++EP   HY+C++DL  RAG L +A+  I  M       +    WG+
Sbjct: 529 QGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIA----WGS 584

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL++C      +L K+AA++ L +DP N G Y+ L+N+Y+    W+   Q R+LMK++G+
Sbjct: 585 LLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGV 644

Query: 435 KKDVGCSWIEV 445
           +K+ G SWI +
Sbjct: 645 RKEKGISWIHI 655



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 175/401 (43%), Gaps = 73/401 (18%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L  S  +KD   G+ V   + K G    V++ + L+  YAK   +  A  +FDE+P+K++
Sbjct: 17  LQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKST 76

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMP--------ALGLDYD------------------ 186
              N L+SGY +   +     L+  MP        A+ + Y+                  
Sbjct: 77  FSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136

Query: 187 -----HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG--- 238
                 FT+S +L +CA     + GR++H+++++    LG+ V + +SL+ MY KCG   
Sbjct: 137 RVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVK--LGLGSCVPVATSLLNMYAKCGDPV 194

Query: 239 -------------------LVTKALQV--FNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
                              L++  +Q   F LA  + E   ++D+V W SM+  Y + GY
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254

Query: 278 FKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
             E + ++  ML   + KPD     +++SAC++  ++ +G +     +H Y L    E  
Sbjct: 255 NLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ-----IHAYILRAETETS 309

Query: 337 ----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
               + L+ +  ++G ++ A +LI E     H  +S     A  S      K    K A 
Sbjct: 310 GAVGNALISMYAKSGGVEIA-RLIVE-----HNRTSNLNIIAFTSLLDGYTKLGNVKPAR 363

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           +   +L   +V  +  +   Y +  +W++  +L  LM  +G
Sbjct: 364 EIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEG 404


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 134/428 (31%), Positives = 225/428 (52%), Gaps = 43/428 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N ++  + ++G    AL+ +  +   GI  + Y+    L     VK+    KQ 
Sbjct: 146 KDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQA 205

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI--------------------- 147
              V  +G+LS++ + S+++D YAK   + DA  +FDE+                     
Sbjct: 206 HGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDV 265

Query: 148 ----------PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
                     P KN V   +L++GY    L    LEL   M AL +  D FT S+ L A 
Sbjct: 266 EAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCAS 325

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A +++   G+Q+H Y+IR   N+  +  + SSLI+MY KCG +     VF+L G +    
Sbjct: 326 ASIASLNHGKQIHGYLIR--TNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKW--- 380

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              DVVLW +++    ++G  +E I++++ M+  G KPD +  + +++ACSH+G V+ G+
Sbjct: 381 ---DVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGL 437

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             +E +   + + P  EHY+CL+DLL RAG  D    L+N+ L++     +  +W ALL 
Sbjct: 438 RLYESITSCHGVIPNQEHYACLIDLLGRAGHFD---TLMNQ-LEKMPCKPNDEIWNALLG 493

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
            C   G  E G+  A+K +ELDP +   YV+LS+++A    W+ +  +R+LM E+ ++KD
Sbjct: 494 VCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRKD 553

Query: 438 VGCSWIEV 445
              SWIE+
Sbjct: 554 RAISWIEI 561



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/405 (20%), Positives = 166/405 (40%), Gaps = 65/405 (16%)

Query: 64  NGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW-LSSVF 122
            G    A+ +   +  +GI L +  L   L    + K  + GK V  H+  +G    + F
Sbjct: 28  QGQLFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTF 87

Query: 123 VGSALIDLY-------------------------------AKLLLIHDAELMFDEIPVKN 151
           + + LI++Y                               AKL  I  A  +FD++P K+
Sbjct: 88  LANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKD 147

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N ++  Y ++      L   R +  LG+ Y+ ++ + LL  C  +   E  +Q H 
Sbjct: 148 VVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHG 207

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI 258
            ++       +++ + SS+++ Y KC  +  A ++F+             ++G+   G++
Sbjct: 208 QVL--VAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDV 265

Query: 259 -----------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
                       K+ V WTS++  Y R+    + ++L+  M+    +PD+  F + + A 
Sbjct: 266 EAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCAS 325

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           +    +  G +   +++    + P     S L+D+  + G L+    + + M D+     
Sbjct: 326 ASIASLNHGKQIHGYLIRT-NIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKW---- 380

Query: 368 SVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            V +W  ++S  A H  G+  +        L + P  + + V+L+
Sbjct: 381 DVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLN 425


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 137/411 (33%), Positives = 216/411 (52%), Gaps = 25/411 (6%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           P + + +  VI+ + + G    AL  F  M   G   +   + S L+A  S+     G +
Sbjct: 363 PLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTE 422

Query: 108 VQAHVTKSGWLS----------SVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCA 155
           + A+  K+  L+           + V +ALID+Y+K      A  +FD+IP+  +N V  
Sbjct: 423 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 482

Query: 156 NALLSGYCEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             ++ G+ +       L+L   M     G+  + +T+S +L ACA L+A   G+Q+HAY+
Sbjct: 483 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 542

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           +R      +  F+ + LI+MY KCG V  A  VF+           K  + WTSM+  YG
Sbjct: 543 LRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ-------KSAISWTSMMTGYG 595

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +G   E + +++ M   G  PD++ F+ V+ ACSH G V  G+ YF+ M  DY L P  
Sbjct: 596 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 655

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHY+C +DLL R+G LDKAW+ + +M        +  +W ALLSAC      EL + A  
Sbjct: 656 EHYACAIDLLARSGRLDKAWRTVKDM----PMEPTAVVWVALLSACRVHSNVELAEHALN 711

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           K +E++  N G Y ++SN+YA    W ++ ++R LMK+ G+KK  GCSW++
Sbjct: 712 KLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 762



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 185/419 (44%), Gaps = 63/419 (15%)

Query: 13  LICLIIFQSR------LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS 66
           LIC   F+S       L+  Y+ C   +    + + +      + + +N ++S   ++ +
Sbjct: 180 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 239

Query: 67  PLYALKTFSFMH--VH----GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
              AL  FS M   VH        D  ++ + L A  S+K     K+V  +  ++G    
Sbjct: 240 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 299

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           VFVG+ALID YAK  L+ +A  +F+ +  K+ V  NA+++GY ++  +    EL + M  
Sbjct: 300 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 359

Query: 181 LGLDYDHFTLSA-----------------------------------LLRACAGLSAAEF 205
             +  D  T +A                                   +L ACA L A   
Sbjct: 360 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 419

Query: 206 GRQVHAYMIRKC-CNLGN-------DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           G ++HAY ++ C   L N       D+ + ++LI+MY KC     A  +F+     LE  
Sbjct: 420 GTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFD--DIPLE-- 475

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN--GTKPDEVAFVTVISACSHTGQVKL 315
             ++VV WT M+G + + G   + +KL+  M+    G  P+      ++ AC+H   +++
Sbjct: 476 -ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 534

Query: 316 GIEYFEWMVHDYKLEPGPEHYS-CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           G +   +++  ++ E      + CL+D+  + G++D A  + + M  +   S +  M G
Sbjct: 535 GKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 593



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 161/356 (45%), Gaps = 50/356 (14%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+ + P   + +N++I +  + G    A+     M   G   D + L   L A   +   
Sbjct: 112 LERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSY 171

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCANALL 159
           R G      +  +G+ S+VF+ +AL+ +Y++   + +A ++FDEI    + + +  N+++
Sbjct: 172 RCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIV 231

Query: 160 SGYCEAKLWAGGLELVRLMPAL------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
           S + ++      L+L   M  +          D  ++  +L AC  L A    ++VH   
Sbjct: 232 SAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNA 291

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL-------------AGHRLEG---- 256
           IR       DVF+ ++LI+ Y KCGL+  A++VFN+             AG+   G    
Sbjct: 292 IRN--GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEA 349

Query: 257 -----------EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
                       I  DVV WT+++  Y + G   E + L+  M+ +G+ P+ V  ++V+S
Sbjct: 350 AFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLS 409

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           AC+  G    G E     +H Y L+      +CL+ L    G  D+   + N ++D
Sbjct: 410 ACASLGAFSQGTE-----IHAYSLK------NCLLTLDNDFGGEDEDLMVYNALID 454



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 120/281 (42%), Gaps = 28/281 (9%)

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           ++S   +G+ ++  Y        A L+ + +    +V  N L+  + +       + +  
Sbjct: 85  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 144

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN-LGNDVFMQSSLIEMYG 235
            M   G   DHFTL  +L+AC  L +   G   H  +   CCN   ++VF+ ++L+ MY 
Sbjct: 145 RMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLI---CCNGFESNVFICNALVAMYS 201

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM----- 290
           +CG + +A  +F+    R       DV+ W S++  + ++      + L+  M +     
Sbjct: 202 RCGSLEEASMIFDEITQRGI----DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 257

Query: 291 -NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY--SCLVDLLCR 345
               + D ++ V ++ AC     V    E     VH   +  G  P+ +  + L+D   +
Sbjct: 258 PTNERSDIISIVNILPACGSLKAVPQTKE-----VHGNAIRNGTFPDVFVGNALIDAYAK 312

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            G ++ A K+ N M  +      V  W A+++     G FE
Sbjct: 313 CGLMENAVKVFNMMEFK-----DVVSWNAMVAGYSQSGNFE 348


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 140/413 (33%), Positives = 216/413 (52%), Gaps = 27/413 (6%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           P + + ++ VI+ + + G    AL  F  M + G   ++  + S L+A  S+     G +
Sbjct: 357 PLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGME 416

Query: 108 VQAHVTKSGWLS------------SVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSV 153
           + A+  K   LS             + V +ALID+Y+K      A  +FD IP +  N V
Sbjct: 417 IHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVV 476

Query: 154 CANALLSGYCEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
               ++ GY +       L++   M      +  + +T+S +L ACA L+A   G+Q+HA
Sbjct: 477 TWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHA 536

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           Y+ R      +  F+ + LI+MY KCG V  A  VF+    R E       V WTSM+  
Sbjct: 537 YVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNE-------VSWTSMMSG 589

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           YG +G  KE + +++ M   G  PD+++F+ ++ ACSH+G V  G+ YF+ M  DY +  
Sbjct: 590 YGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVA 649

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
             EHY+C++DLL R G LDKAWK I EM        S  +W ALLSAC      EL + A
Sbjct: 650 SAEHYACVIDLLARCGRLDKAWKTIQEM----PMEPSAVIWVALLSACRVHSNVELAEYA 705

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
             K + +   N G Y ++SN+YA    W ++ ++R+LMK+ G+KK  GCSW++
Sbjct: 706 LNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQ 758



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 197/459 (42%), Gaps = 72/459 (15%)

Query: 13  LICLIIFQSR------LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS 66
           LIC   F+S       L+  Y+ C   ++   + + +      + + +N +++   +  +
Sbjct: 174 LICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSN 233

Query: 67  PLYALKTFSFMH--VHGIFL----DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           P  AL+ FS M   VH        D  ++ + L A  S+K     K++ ++  ++G  + 
Sbjct: 234 PRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFAD 293

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            FV +ALID YAK   ++DA  +F+ +  K+ V  NA+++GY ++  +    EL   M  
Sbjct: 294 AFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRK 353

Query: 181 LGLDYDHFTLSA-----------------------------------LLRACAGLSAAEF 205
             +  D  T SA                                   LL ACA L A   
Sbjct: 354 ENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQ 413

Query: 206 GRQVHAYMIRKC----------CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           G ++HAY ++KC             G D+ + ++LI+MY KC     A  +F+    R  
Sbjct: 414 GMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRR-- 471

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN--GTKPDEVAFVTVISACSHTGQV 313
               ++VV WT M+G Y + G   + +K++  M+       P+      ++ AC+H   +
Sbjct: 472 ---ERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAAL 528

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYS-CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           ++G +   ++   ++ EP     + CL+D+  + G++D A  + + M  R   S     W
Sbjct: 529 RMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVS-----W 583

Query: 373 GALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            +++S    H  GK  L      +     P ++   V+L
Sbjct: 584 TSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 155/334 (46%), Gaps = 47/334 (14%)

Query: 37  GTLTNCLKFLNPRNPLP---FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G   + L  L    P P   +N+++ +  + G    A+     M   G   D + L  +L
Sbjct: 97  GATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYAL 156

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK--- 150
            A   +     G+ +   +  +G+ S+VFV +AL+ +Y++   + DA L+FDEI  K   
Sbjct: 157 KACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGID 216

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMP------ALGLDYDHFTLSALLRACAGLSAAE 204
           + +  N++++ + +       LEL   M       A     D  ++  +L ACA L A  
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALP 276

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAG 251
             +++H+Y IR       D F+ ++LI+ Y KCG +  A++VFN             + G
Sbjct: 277 QIKEIHSYAIRN--GTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTG 334

Query: 252 HRLEG---------------EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           +   G                I  DV+ W++++  Y + G  +E +  ++ M+++G++P+
Sbjct: 335 YTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPN 394

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            V  ++++SAC+  G +  G+E     +H Y L+
Sbjct: 395 SVTIISLLSACASLGALSQGME-----IHAYSLK 423


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 140/413 (33%), Positives = 220/413 (53%), Gaps = 17/413 (4%)

Query: 38  TLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +LT+  K  N     + + +N +I  + R      AL  F  M +           S L 
Sbjct: 393 SLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLG 452

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
            S S+       Q+   + K G     F GSALID+Y+K   + DA L+F+EI  K+ V 
Sbjct: 453 VSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVV 512

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
             A+ SGY +       L+L + +    L  + FT +A++ A + +++   G+Q H  +I
Sbjct: 513 WTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVI 572

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           +      +D F+ ++L++MY K G + +A + F            KD   W SM+  Y +
Sbjct: 573 K--MGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNW-------KDTACWNSMIATYAQ 623

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +G  ++ ++++E M+M G KP+ V FV V+SACSHTG + LG ++F+ M   + +EPG E
Sbjct: 624 HGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQ-FGIEPGIE 682

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
           HY C+V LL RAG+L +A + I +M  +     +  +W +LLSAC   G  ELG  AA+ 
Sbjct: 683 HYVCMVSLLGRAGKLYEAKEFIEKMPIK----QAAVVWRSLLSACRVSGNVELGTYAAEM 738

Query: 395 ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A+  +P + G YV+LSN++A   MW  + +LRE M   G+ K+ GCSWIEV  
Sbjct: 739 AISCNPADSGSYVLLSNIFASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNN 791



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 156/332 (46%), Gaps = 15/332 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  +    +  +I+ + + G    +LK F  M    +  D Y L S L+A   +K    G
Sbjct: 202 LQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGG 261

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+  +V +SG +  V + +  ID Y K   +     +FD +  KN V    +++G  + 
Sbjct: 262 KQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQN 321

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L+L   M  +G + D F  +++L +C  L A E GRQVHAY I+   N+ ND F
Sbjct: 322 SFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIK--VNIDNDDF 379

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +++ LI+MY KC  +T A +VFNL           D+V + +M+  Y R     E + L+
Sbjct: 380 VKNGLIDMYAKCDSLTDARKVFNLMA-------AIDLVSYNAMIEGYSRQDKLCEALDLF 432

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M ++ + P  + FV+++   +    ++L  +    ++  Y +       S L+D+  +
Sbjct: 433 REMRLSLSSPTLLIFVSLLGVSASLYHLELSNQ-IHGLIIKYGVSLDEFAGSALIDVYSK 491

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
              +  A  +  E+ D+      + +W A+ S
Sbjct: 492 CSRVGDARLVFEEIQDK-----DIVVWTAMFS 518



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 153/319 (47%), Gaps = 19/319 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           ++ +N + ++ ++S +  +   L AL  F  FM       + Y L S + A T       
Sbjct: 100 MSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNP 159

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
             Q+   V K G++  V+V ++LID Y K   I DA L+FD + VK S     +++GY +
Sbjct: 160 ALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSK 219

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L+L   M    +  D + LS++L AC  L   E G+Q+H Y++R    +  DV
Sbjct: 220 QGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRS--GIVMDV 277

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            M +  I+ Y KC  V    ++F+    R+   ++K+VV WT+++    +N + ++ + L
Sbjct: 278 SMVNGFIDFYFKCHKVQLGRKLFD----RM---VDKNVVSWTTVIAGCMQNSFHRDALDL 330

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLV 340
           +  M   G  PD     +V+++C     ++ G +     VH Y ++   ++     + L+
Sbjct: 331 FVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQ-----VHAYAIKVNIDNDDFVKNGLI 385

Query: 341 DLLCRAGELDKAWKLINEM 359
           D+  +   L  A K+ N M
Sbjct: 386 DMYAKCDSLTDARKVFNLM 404



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 121/266 (45%), Gaps = 28/266 (10%)

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMP 179
           +F+ + L+  Y+KL L++ A  +FD +  KN V  ++++S Y         L L V+ M 
Sbjct: 74  IFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMR 133

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
           +     + + L++++RAC          Q+H  +++       DV++ +SLI+ Y K   
Sbjct: 134 SCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKG--GYVQDVYVCTSLIDFYTKHAC 191

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           +  A  +F       +G   K    WT+++  Y + G  +  +KL++ M      PD+  
Sbjct: 192 IDDARLLF-------DGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYV 244

Query: 300 FVTVISACSHTGQVKLGIEYFEW--MVHDYKLEPG----PEHYSCLVDLLCRAGELDKAW 353
             +V+SAC       L +++ E    +H Y L  G        +  +D   +  ++    
Sbjct: 245 LSSVLSAC-------LMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGR 297

Query: 354 KLINEMLDRGHGSSSVSMWGALLSAC 379
           KL + M+D+     +V  W  +++ C
Sbjct: 298 KLFDRMVDK-----NVVSWTTVIAGC 318



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 8/91 (8%)

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           +D+F+ ++L+  Y K  LV  A ++F+   H       K++V W+SM+ +Y  + +  E 
Sbjct: 72  HDIFLVNTLLHAYSKLNLVNHANKLFDTMSH-------KNLVTWSSMVSMYTHHSHCLEA 124

Query: 282 IKLYEAMLMN-GTKPDEVAFVTVISACSHTG 311
           + L+   + +   KP+E    +V+ AC+  G
Sbjct: 125 LMLFVQFMRSCNEKPNEYILASVVRACTQFG 155


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 143/429 (33%), Positives = 223/429 (51%), Gaps = 46/429 (10%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N +IS F R+GS L A+  F  MH+ G+  D  ++ S L A   +     G Q+ 
Sbjct: 174 NLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIH 233

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL-- 167
            +V K G     FV SALID+Y K     +   +F+E+   +    NAL++G     L  
Sbjct: 234 CYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVD 293

Query: 168 ------------------WAG-------------GLELVRLMPALGLDYDHFTLSALLRA 196
                             W                LEL R M   G+  +  T+  LL A
Sbjct: 294 NALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPA 353

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C  ++A   G+  H + +R    + NDV++ S+LI+MY KCG +  +   F++       
Sbjct: 354 CGNIAALLHGKAAHCFSLRN--GIFNDVYVGSALIDMYAKCGRMLASRLCFDMMP----- 406

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
             N+++V W S++  Y  +G   E I ++E M   G KPD V+F  V+SAC+  G  + G
Sbjct: 407 --NRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEG 464

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             YF+ M  ++ +E   EHYSC+V LL R+G L++A+ +I +M           +WGALL
Sbjct: 465 WFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQM----PFEPDSCVWGALL 520

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           S+C    + +LG++AA++  EL+P N G Y++LSN+YA   MW E+  +R++M+ +GLKK
Sbjct: 521 SSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKK 580

Query: 437 DVGCSWIEV 445
           + G SWIE+
Sbjct: 581 NPGYSWIEI 589



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 174/419 (41%), Gaps = 99/419 (23%)

Query: 69  YALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
           + ++ FS+M   GI  D+  L + +    ++   + GKQ+      SG      V S+L+
Sbjct: 57  HVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLL 116

Query: 129 DLYAKLLLIHDAELMFDEIP-------------------VK----------------NSV 153
            +Y +   + DA  +FD++P                   VK                N V
Sbjct: 117 HMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLV 176

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N ++SG+  +  +   + + + M   GL  D  ++S++L A   L     G Q+H Y+
Sbjct: 177 SWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYV 236

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKC-------------------------------GLVTK 242
           I++   LG D F+ S+LI+MYGKC                               GLV  
Sbjct: 237 IKQ--GLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDN 294

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           AL+VF     + +G ++ +VV WTSM+    +NG   E ++L+  M + G KP+ V    
Sbjct: 295 ALEVFK----QFKG-MDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPC 349

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY--SCLVDLLCRAGELDKAWKLINE 358
           ++ AC +   +  G        H + L  G   + Y  S L+D+  + G +  +    + 
Sbjct: 350 LLPACGNIAALLHG-----KAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDM 404

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGK-------FELGKLAAQKALELDPHNVGIYVMLS 410
           M +R     ++  W +L++     GK       FEL +   QK     P +V    +LS
Sbjct: 405 MPNR-----NLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQK-----PDHVSFTCVLS 453



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 10/214 (4%)

Query: 37  GTLTNCLKFLNPRNPLPFNVV-----ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           G + N L+       +  NVV     I+   +NG  + AL+ F  M + G+  ++  +  
Sbjct: 290 GLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPC 349

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L A  ++     GK       ++G  + V+VGSALID+YAK   +  + L FD +P +N
Sbjct: 350 LLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRN 409

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N+L++GY         + +  LM   G   DH + + +L AC      E G     
Sbjct: 410 LVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFD 469

Query: 212 YMIRKCCNLGNDVFMQ--SSLIEMYGKCGLVTKA 243
            M R   N G +  M+  S ++ + G+ G + +A
Sbjct: 470 SMSR---NHGVEARMEHYSCMVTLLGRSGRLEEA 500


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 143/428 (33%), Positives = 221/428 (51%), Gaps = 44/428 (10%)

Query: 51  PLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110
           P+ +N +IS   R+G    +  +F  M             S L+A    KD   G QV  
Sbjct: 126 PVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHK 185

Query: 111 HVTKSGWLSSVFVGSALIDLYAK--------LLL-----------------------IHD 139
            V +SG L    V +AL+D+YA+        +L                        +  
Sbjct: 186 RVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDR 245

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD +P ++++   A++ GY +   +   LE  R M    +  D FT+ +++ ACA 
Sbjct: 246 ARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQ 305

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L A E G     YM R    +  DVF+ ++LI+MY KCG + +AL VF       +   N
Sbjct: 306 LGALETGEWARIYMGR--LGIKMDVFVGNALIDMYSKCGSIERALDVF-------KDMHN 356

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           +D   WT+++     NG  +E I ++  ML     PDEV FV V++AC+H G V  G E+
Sbjct: 357 RDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREF 416

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           F  M   Y + P   HY CL+D+L RAG+L +A   I++M  + + +    +WG LL++C
Sbjct: 417 FLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNST----IWGTLLASC 472

Query: 380 HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439
              G  E+G+LAA++ LELDP N   Y++LSN+YAK   W ++ ++R+++ EKG+KK+ G
Sbjct: 473 RVYGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPG 532

Query: 440 CSWIEVTG 447
           CS IE+ G
Sbjct: 533 CSMIEMNG 540



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 116/269 (43%), Gaps = 44/269 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I  + + G    AL+TF +M +  +  D + + S +TA   +     G+  
Sbjct: 256 RDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWA 315

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           + ++ + G    VFVG+ALID+Y+K   I  A  +F ++  ++     A++ G       
Sbjct: 316 RIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRG 375

Query: 169 AGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              +++  R++ AL    D  T   +L AC            HA ++ K    G + F+ 
Sbjct: 376 EEAIDMFYRMLRALQTP-DEVTFVGVLTAC-----------THAGLVDK----GREFFL- 418

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
            S+ E Y                       I+  VV +  ++ V GR G  KE +   + 
Sbjct: 419 -SMTEAY----------------------NISPTVVHYGCLIDVLGRAGKLKEALDTIDK 455

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           M M   KP+   + T++++C   G  ++G
Sbjct: 456 MPM---KPNSTIWGTLLASCRVYGNSEIG 481



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 140/322 (43%), Gaps = 62/322 (19%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS----VCANALLSGYC 163
           + AHV K G  S+    S+LI +YA       A  + +   +       V  NAL+SG+ 
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137

Query: 164 EAKLWAGGLEL-----VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
                +G  EL     V ++ A  +     T  ++L AC        G QVH  ++    
Sbjct: 138 R----SGRFELSCCSFVDMVRASAM-ATAVTYVSVLSACGKGKDLLLGMQVHKRVLES-- 190

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEIN------ 259
            +  D  ++++L++MY +CG +  A  +F              ++G    G+++      
Sbjct: 191 GVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLF 250

Query: 260 -----KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                +D + WT+M+  Y + G F++ ++ +  M +   + DE   V+V++AC+  G ++
Sbjct: 251 DHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALE 310

Query: 315 LGIEYFEW-MVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDR--------- 362
            G    EW  ++  +L    + +  + L+D+  + G +++A  +  +M +R         
Sbjct: 311 TG----EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAII 366

Query: 363 ------GHGSSSVSMWGALLSA 378
                 G G  ++ M+  +L A
Sbjct: 367 LGLAVNGRGEEAIDMFYRMLRA 388


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 131/412 (31%), Positives = 217/412 (52%), Gaps = 14/412 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G      + ++ RN + +N ++S +  +G    A+  F+ M   G+ +D Y + S + A
Sbjct: 173 MGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPA 232

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
           S SV   + G  +   + ++G+ +   + +AL+D+Y     + DA  +F E+ VK+    
Sbjct: 233 SLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAW 292

Query: 156 NALLSGYCEAKLWAGGLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
             +L+G+   + W   ++   +++    L  D   L  +L +C+   A + GR+VHA  I
Sbjct: 293 TLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAI 352

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           + C    N++F+ S++I+MY  CG +  A + F   G        KDVV W +M+   G 
Sbjct: 353 KTC--FANNIFVGSAVIDMYANCGNLEDAKRFFYGMGE-------KDVVCWNAMIAGNGM 403

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           NGY  + I L+  M  +G  PDE  FV+V+ ACSH G V  G++ F  MV      P  +
Sbjct: 404 NGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQ 463

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
           HY+C++D+L RAG+LD A+  IN M  +        ++  LL AC   G  +LG   +QK
Sbjct: 464 HYACVIDILGRAGQLDAAYSFINNMPFQ----PDFDVYSTLLGACRIHGNIKLGHEISQK 519

Query: 395 ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
             E++P++ G YV+LSN+YA    W+ +   R  ++ K LKKD G S IE+ 
Sbjct: 520 IFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEIN 571



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 155/335 (46%), Gaps = 24/335 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + + ++IS   +N   + A+  F  M +     +   + S L A  ++   R  K V
Sbjct: 85  KNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSV 144

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                + G+  +VFV +AL+D+Y+K   +  A  +F+ +  +N V  NA++SGY +    
Sbjct: 145 HCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFS 204

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              ++L  LM   GL  D +T+ +L+ A   +   + G  +H ++IR      ND  +++
Sbjct: 205 EEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIR--TGYENDKHIKT 262

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+++Y     V  A +VF+           KDV  WT ML  +    ++   IK +  M
Sbjct: 263 ALMDIYVSHNCVDDAHRVFSEM-------FVKDVAAWTLMLTGFSSGRHWDRAIKHFNKM 315

Query: 289 L-MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLL 343
           L +   K D +  + ++S+CSH+G ++ G       VH   ++    +     S ++D+ 
Sbjct: 316 LGIQNLKLDSIVLMGILSSCSHSGALQQGRR-----VHALAIKTCFANNIFVGSAVIDMY 370

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
              G L+ A +        G G   V  W A+++ 
Sbjct: 371 ANCGNLEDAKRFF-----YGMGEKDVVCWNAMIAG 400



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 140/301 (46%), Gaps = 27/301 (8%)

Query: 86  TYALCSSLTASTSV----KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE 141
           T  LC    +  S+    KD +  +Q+ A +  SG   + F+ ++L++ Y    L+ DA+
Sbjct: 17  TQRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAK 76

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            +F   P KN V    L+SG  +   +   +++ R M       +  T+S++L A A L 
Sbjct: 77  QIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLG 136

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
                + VH + +R       +VF++++L++MY K G +  A Q+F       E    ++
Sbjct: 137 LIRIAKSVHCFWVRG--GFEGNVFVETALVDMYSKFGCMGVARQLF-------ESMSERN 187

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           VV W +++  Y  +G+ +E I L+  M   G   D    +++I A    G +++G     
Sbjct: 188 VVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTG--- 244

Query: 322 WMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             +H + +  G E+     + L+D+      +D A ++ +EM  +      V+ W  +L+
Sbjct: 245 --IHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVK-----DVAAWTLMLT 297

Query: 378 A 378
            
Sbjct: 298 G 298


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 226/422 (53%), Gaps = 20/422 (4%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTY 87
           R  ++L +       +  R+   ++ ++S + R+G P  AL  +  M     +    + +
Sbjct: 106 RSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEF 165

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS---VFVGSALIDLYAKLLLIHDAELMF 144
              S+L A+ + +  R G+++  HV + G  ++     + SAL D+YAK   + DA  +F
Sbjct: 166 TASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVF 225

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAA 203
           D +PV+++V   A++  Y +      G  L + ++   G+  + FT + +LRACA  +  
Sbjct: 226 DRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVE 285

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
            FGRQVH  M +     G+  F +S+L+ MY KCG +  A++VF       E     D+V
Sbjct: 286 SFGRQVHGRMAKS--GTGDSCFAESALLRMYSKCGDMGSAVRVF-------EAMAKPDLV 336

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            WT+++  Y +NG  +E ++ ++  L +G KPD V FV V+SAC+H G V  G+E F  +
Sbjct: 337 SWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSI 396

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
              Y +E   +HY+C++DLL R+G+ ++A K+I  M  +     +  +W +LL  C    
Sbjct: 397 KEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVK----PNKFLWASLLGGCRIHK 452

Query: 384 KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
              L + AA+   E++P N   YV L+N+YA   ++DE+  +R +M+ KG+ K    SWI
Sbjct: 453 NVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWI 512

Query: 444 EV 445
           EV
Sbjct: 513 EV 514


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 137/406 (33%), Positives = 223/406 (54%), Gaps = 15/406 (3%)

Query: 40  TNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           +N    L+ +N + +N +I++F +N   L A+     M  +G   ++    + L A   +
Sbjct: 198 SNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARM 257

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
              R GK++ A     G    +FV +AL D+YAK   +  A  +FD   +++ V  N L+
Sbjct: 258 GLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFD-TSLRDEVSYNILI 316

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
            G+ +    +  L L   M  +GL  D+ +    L ACA L+A + G+++H +++RK  +
Sbjct: 317 VGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFH 376

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           +   +F+ +SL++ Y KCG +  A  +F+    R+    NKDV  W +M+  YG  G   
Sbjct: 377 I--HLFVANSLLDFYTKCGRIGLARNIFD----RM---TNKDVASWNTMILGYGMLGELD 427

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
             I L+E M  +  + D V+F+ V+SACSH G ++ G +YF+ +     +EP   HY+C+
Sbjct: 428 TAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDEL-KARGIEPTQMHYACM 486

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL RAG +++A +LI  +          ++WGALL AC   G  EL   AA+   EL 
Sbjct: 487 VDLLGRAGLMEEAAELIKGLPI----VPDANIWGALLGACRIYGNLELAAWAAEHLFELK 542

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           P + G Y +LSN+YA+   WDE  ++RELMK +G+KK  GCSW+++
Sbjct: 543 PEHSGYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWVQI 588



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 126/258 (48%), Gaps = 12/258 (4%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
            L+ ++ M   G+  D +     L A     + R G++V   V K G+ S VFVG+ L+ 
Sbjct: 25  GLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVVKLGFESDVFVGNTLLS 84

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW--AGGLELVRLMPALGLDYDH 187
            Y     + DA  +FDE+P K+ V  N ++ G      W     L++ RLM   GL  + 
Sbjct: 85  FYGNCGGLRDAGRVFDEMPEKDLVSWNTMI-GVFSVNGWHYRDALDMFRLMIDEGLKPNS 143

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
            T+S+ L     L   + GR+VH   IR    L +D+F+ +SLI+MY K G  T+A  VF
Sbjct: 144 ITISSFLPVLVELEFFKAGREVHGSSIR--MGLESDIFIANSLIDMYAKSGHSTEASNVF 201

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
               ++L+    K+VV W +M+  + +N +    + L   M   G  P+ V F  V+ AC
Sbjct: 202 ----YKLDA---KNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPAC 254

Query: 308 SHTGQVKLGIEYFEWMVH 325
           +  G V+ G E     +H
Sbjct: 255 ARMGLVRPGKEIHARSIH 272



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 167/366 (45%), Gaps = 28/366 (7%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLY-ALKTF 74
           F+S + +  T      N G L +  +  +    ++ + +N +I  F  NG     AL  F
Sbjct: 72  FESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMF 131

Query: 75  SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
             M   G+  ++  + S L     ++  + G++V     + G  S +F+ ++LID+YAK 
Sbjct: 132 RLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKS 191

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
               +A  +F ++  KN V  NA+++ + + +     + LVR M   G   +  T + +L
Sbjct: 192 GHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVL 251

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            ACA +     G+++HA  I   C    D+F+ ++L +MY K G +  A  VF+ +    
Sbjct: 252 PACARMGLVRPGKEIHARSIHMGCAF--DLFVSNALTDMYAKSGHLKLARNVFDTS---- 305

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                +D V +  ++  + +     E + L+  M + G K D V+F+  +SAC++   +K
Sbjct: 306 ----LRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIK 361

Query: 315 LGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
            G E     +H + L      +    + L+D   + G +  A  + + M ++      V+
Sbjct: 362 QGKE-----IHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNK-----DVA 411

Query: 371 MWGALL 376
            W  ++
Sbjct: 412 SWNTMI 417



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 113/237 (47%), Gaps = 26/237 (10%)

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           N L+ GY  A +  GGLE+   M  +G+  D  T   +L+ACA       GR+VH  +++
Sbjct: 11  NTLIRGYSIAGV-GGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVVK 69

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
                 +DVF+ ++L+  YG CG +  A +VF+           KD+V W +M+GV+  N
Sbjct: 70  --LGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPE-------KDLVSWNTMIGVFSVN 120

Query: 276 GY-FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           G+ +++ + ++  M+  G KP+ +   + +         K G E     VH   +  G E
Sbjct: 121 GWHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGRE-----VHGSSIRMGLE 175

Query: 335 H----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
                 + L+D+  ++G   +A  +  ++      + +V  W A++ A     +FEL
Sbjct: 176 SDIFIANSLIDMYAKSGHSTEASNVFYKL-----DAKNVVSWNAMI-ANFAQNRFEL 226


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 142/405 (35%), Positives = 215/405 (53%), Gaps = 18/405 (4%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           NP N   +  +I  F  +G+ L A++ +S M    I  D Y + S L A  S    R G+
Sbjct: 99  NP-NVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGR 157

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP----VKNSVCANALLSGY 162
           +V +   K G+ S+  V   +++LY K   + DA  +F+E+P     K++VC  A++ G+
Sbjct: 158 EVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGF 217

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
              +     LE  R M    +  + FT+  +L AC+ L A E GR VH+YM +    L  
Sbjct: 218 VRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIEL-- 275

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           ++F+ ++LI MY +CG + +A  VF+    R       DV+ + +M+     NG  ++ I
Sbjct: 276 NLFVGNALINMYSRCGSIDEAQTVFDEMKDR-------DVITYNTMISGLSMNGKSRQAI 328

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L+  M+    +P  V FV V++ACSH G V  G E F  M  DY++EP  EHY C+VDL
Sbjct: 329 ELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDL 388

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L R G L++A+ LI  M      +    M G LLSAC      ELG+  A++  +    +
Sbjct: 389 LGRVGRLEEAYDLIRTM----KMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQAD 444

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            G YV+LS++YA    W E  Q+R  MKE G++K+ GCS IEV  
Sbjct: 445 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 489



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 123/255 (48%), Gaps = 6/255 (2%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + A + ++G     F+   L+   +K   I  A  +F      N     AL+ G+  +  
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +   ++L   M    +  D++ ++++L+AC    A   GR+VH+  ++      ++  ++
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALK--LGFSSNRLVR 175

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
             ++E+YGKCG +  A +VF       E  + KD V WT+M+  + RN      ++ +  
Sbjct: 176 LRIMELYGKCGELGDARRVFE---EMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRG 232

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M     +P+E   V V+SACS  G +++G     +M   +++E      + L+++  R G
Sbjct: 233 MQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM-RKFEIELNLFVGNALINMYSRCG 291

Query: 348 ELDKAWKLINEMLDR 362
            +D+A  + +EM DR
Sbjct: 292 SIDEAQTVFDEMKDR 306


>gi|357518009|ref|XP_003629293.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355523315|gb|AET03769.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 672

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 145/444 (32%), Positives = 229/444 (51%), Gaps = 47/444 (10%)

Query: 35  NLGTLTNCLK-FLNPRNP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           N G +++  K F N  +P  + +N +IS +  NG  + AL  F+ M  +G++ D  A+ +
Sbjct: 241 NAGRMSDARKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDFSAVAN 300

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L+ S+S+ +    KQ+  H  K G    + V S L+D Y+K    HD+  +F E+ V +
Sbjct: 301 ILSISSSLLNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKVYD 360

Query: 152 SVCANALLSGYC------EAK------------LW-------------AGGLELVRLMPA 180
           ++  N +++ YC      +AK             W             +  L+   +M  
Sbjct: 361 AILLNTMITVYCNCGRVEDAKEVFNSMPNKTLISWNSILVGLTQNACPSEALDTFSMMNK 420

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
           L +  D F+ ++++ ACA  S+ E G Q+    I     L +D  + +SL++ Y KCGLV
Sbjct: 421 LDVKMDKFSFASVISACAIKSSLELGEQLFGKAI--TLGLESDQIICTSLVDFYCKCGLV 478

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
               +VF       +G I  D V W +ML  Y  NGY  E + L+  M  +G +P  + F
Sbjct: 479 EMGRKVF-------DGMIKTDEVSWNTMLMGYATNGYGIEALTLFNEMGYSGVRPSAITF 531

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
             ++SAC H G V+ G + F  M HDY + PG EHYSC+VDL  R G   +A  LI EM 
Sbjct: 532 TGILSACDHCGLVEEGRDLFRTMKHDYDINPGIEHYSCMVDLFARVGCFGEAMYLIEEMP 591

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +    +  +MW ++L  C   G   +GK+AA+K ++LDP N G Y+ LSN+ A    W+
Sbjct: 592 FQ----ADANMWLSVLRGCVSHGNKTIGKMAAEKIIQLDPGNSGAYIQLSNILATSEDWE 647

Query: 421 EIGQLRELMKEKGLKKDVGCSWIE 444
              ++RELM+ K ++K  GCSW++
Sbjct: 648 GSAEVRELMRNKNVQKIPGCSWMD 671



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 187/495 (37%), Gaps = 111/495 (22%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTYALCSSLTASTSVKDARFG 105
           +NPL +N +I  + R+G P  +L  F  M++     +  D + L +   A   +     G
Sbjct: 121 KNPLVWNSMIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDAFVLSTVFGACADLFALDCG 180

Query: 106 KQVQAHV---------------------TKSGWLSSV------------FVGSALIDLYA 132
           KQV A V                      K G L S             F  SAL+  YA
Sbjct: 181 KQVHARVFIDGFEFEQDKVLCSSIVNFYGKCGDLDSAARVVGFVKEVDDFSLSALVSGYA 240

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
               + DA  +FD      SV  N+++SGY         L L   M   G+  D   ++ 
Sbjct: 241 NAGRMSDARKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDFSAVAN 300

Query: 193 LLRACAGLSAAEFGRQVHAYMIR------------------KC------CNLGN-----D 223
           +L   + L   E  +Q+H +  +                  KC      C L +     D
Sbjct: 301 ILSISSSLLNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKVYD 360

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
             + +++I +Y  CG V  A +VFN          NK ++ W S+L    +N    E + 
Sbjct: 361 AILLNTMITVYCNCGRVEDAKEVFN-------SMPNKTLISWNSILVGLTQNACPSEALD 413

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
            +  M     K D+ +F +VISAC+    ++LG + F   +    LE      + LVD  
Sbjct: 414 TFSMMNKLDVKMDKFSFASVISACAIKSSLELGEQLFGKAI-TLGLESDQIICTSLVDFY 472

Query: 344 CRAGELD-------------------------------KAWKLINEMLDRGHGSSSVSMW 372
           C+ G ++                               +A  L NEM   G   S+++  
Sbjct: 473 CKCGLVEMGRKVFDGMIKTDEVSWNTMLMGYATNGYGIEALTLFNEMGYSGVRPSAITFT 532

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGI--YVMLSNLYAKFCMWDEIGQLRELMK 430
           G +LSAC  CG  E G+   +        N GI  Y  + +L+A+   +   G+   L++
Sbjct: 533 G-ILSACDHCGLVEEGRDLFRTMKHDYDINPGIEHYSCMVDLFARVGCF---GEAMYLIE 588

Query: 431 EKGLKKDVGCSWIEV 445
           E   + D    W+ V
Sbjct: 589 EMPFQADANM-WLSV 602



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 36/254 (14%)

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM---PALGLDYDHFTLSAL 193
           +  A+ +F+ +P+KN +  N+++ GY         L L + M   P   +  D F LS +
Sbjct: 108 LQQAQALFNAMPMKNPLVWNSMIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDAFVLSTV 167

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV------- 246
             ACA L A + G+QVHA +         D  + SS++  YGKCG +  A +V       
Sbjct: 168 FGACADLFALDCGKQVHARVFIDGFEFEQDKVLCSSIVNFYGKCGDLDSAARVVGFVKEV 227

Query: 247 --FNL---------------AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
             F+L               A    + +++   VLW S++  Y  NG   E + L+  M 
Sbjct: 228 DDFSLSALVSGYANAGRMSDARKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMR 287

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCR 345
            NG   D  A   ++S  S      L +E  + M HD+  + G  H     S L+D   +
Sbjct: 288 RNGVWGDFSAVANILSISSSL----LNVELVKQM-HDHAFKIGATHDIVVASTLLDAYSK 342

Query: 346 AGELDKAWKLINEM 359
                 + KL +E+
Sbjct: 343 CQHPHDSCKLFHEL 356



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 103/262 (39%), Gaps = 53/262 (20%)

Query: 100 KDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           +  R  +Q+   + K+G L SSV   + L+ LY++   +HDA  +FDE+P  N    N L
Sbjct: 8   RTIREARQLHLSLLKTGNLHSSVITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTL 67

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           +  +         LEL   MP                            + H        
Sbjct: 68  IEAHINLGHRNKSLELFHAMP---------------------------HKTH-------- 92

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
                 +  + ++    K G + +A  +FN           K+ ++W SM+  Y R+GY 
Sbjct: 93  ------YSWNLIVSTLSKSGDLQQAQALFNAMPM-------KNPLVWNSMIHGYSRHGYP 139

Query: 279 KEVIKLYEAMLMNGTKP---DEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLEPGPE 334
           +  + L++ M ++  +    D     TV  AC+    +  G + +    +  ++ E    
Sbjct: 140 RNSLLLFKEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQVHARVFIDGFEFEQDKV 199

Query: 335 HYSCLVDLLCRAGELDKAWKLI 356
             S +V+   + G+LD A +++
Sbjct: 200 LCSSIVNFYGKCGDLDSAARVV 221



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 15/131 (11%)

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           +E++  C  + +A Q+ +L+  +  G ++  V+    +L +Y R G   +  KL++ M  
Sbjct: 1   MELHSVCRTIREARQL-HLSLLK-TGNLHSSVITTNRLLQLYSRRGSLHDASKLFDEM-- 56

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS--CLVDLLCRAGE 348
              +P+  ++ T+I A  + G     +E F  M       P   HYS   +V  L ++G+
Sbjct: 57  --PQPNPFSWNTLIEAHINLGHRNKSLELFHAM-------PHKTHYSWNLIVSTLSKSGD 107

Query: 349 LDKAWKLINEM 359
           L +A  L N M
Sbjct: 108 LQQAQALFNAM 118


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 141/414 (34%), Positives = 233/414 (56%), Gaps = 18/414 (4%)

Query: 35  NLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           + G L +C K    +  +  L +N +IS F RNG P  AL  F  M   G+  D+Y+L S
Sbjct: 350 DTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLAS 409

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           SL+A  ++  ++ G Q+  ++ K+G  +  FV +ALID+YAK   +H A  MF++I  K+
Sbjct: 410 SLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKS 468

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N+++ G+ +       + L   M    +  D  T  ++++AC+ L   E G+ VH 
Sbjct: 469 LVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHH 528

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            +I     L  D ++ ++L +MY KCG +  A  VF+    R        +V W+ M+  
Sbjct: 529 KLIMY--GLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSER-------SIVSWSVMIAG 579

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           YG +G     I L+  ML +G KP+++ F+ ++SACSH G V+ G  YF  M  ++ +EP
Sbjct: 580 YGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGVEP 638

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
             +H++C+VDLL RAG+L+ A+++I  +       ++ S+WGALL+ C    + ++ K  
Sbjct: 639 KHDHFACMVDLLSRAGDLNGAYQIITSL----PFPANSSIWGALLNGCRIHKRIDIIKSI 694

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            +  L++D  + G Y +LSN+YA+   WD+ G++R +MK KGL+K  G S IE+
Sbjct: 695 EKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEI 748



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 148/308 (48%), Gaps = 24/308 (7%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           +  +   S L A +   D   G +V   V K G+ S   V ++L+ +Y ++  + DA   
Sbjct: 98  ISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKA 157

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           FD +P+++ V  ++++  + +    + GL++   M +  ++ D  T+ ++  AC+ L + 
Sbjct: 158 FDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSL 217

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
             GR VH Y++R+   + ++  + +SLI MYGK G +  A ++F     R+         
Sbjct: 218 RLGRSVHGYVVRR--EIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAP------ 269

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            WT M+  Y ++G F+E + ++  M     +P++V  V V+ AC+  G+VK G     ++
Sbjct: 270 -WTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFV 328

Query: 324 VHDYKLEP-----GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +    ++P     GP     L++L    G L    K+   + ++     ++  W  L+S 
Sbjct: 329 IRR-AMDPELDFLGP----ALMELYADTGNLRDCHKVFETIKEK-----TILSWNTLISI 378

Query: 379 CHDCGKFE 386
               G+ E
Sbjct: 379 FTRNGQPE 386



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 159/331 (48%), Gaps = 21/331 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + ++ ++ +F +NG     L  FS M    +  D+  + S   A + +   R G+ V
Sbjct: 164 RDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSV 223

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +V +    S+  + ++LI +Y KL  ++ AE +F+ +P + +     ++S Y ++  +
Sbjct: 224 HGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCF 283

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L +   M    ++ +  T+  +L ACA L   + GR VH ++IR+  +   D F+  
Sbjct: 284 QEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELD-FLGP 342

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+E+Y   G +    +VF       E    K ++ W +++ ++ RNG  +E + L+  M
Sbjct: 343 ALMELYADTGNLRDCHKVF-------ETIKEKTILSWNTLISIFTRNGQPEEALLLFVQM 395

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---YSCLVDLLCR 345
              G  PD  +  + +SAC      +LG +     +H Y ++ G  +    + L+D+  +
Sbjct: 396 QTQGLMPDSYSLASSLSACGTISFSQLGAQ-----IHGYIIKTGNFNDFVQNALIDMYAK 450

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            G +  A K+  ++ ++     S+  W +++
Sbjct: 451 CGFVHSANKMFEKIKEK-----SLVTWNSMI 476



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 149/328 (45%), Gaps = 33/328 (10%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+ AH+  +G        + LI+ YA++ +   ++ +FD  P  +S     L+  Y    
Sbjct: 19  QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCY---- 74

Query: 167 LWAGGLELV-----RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           +W G  E        ++        +F   ++L+AC+G      G +VH  +I+  C   
Sbjct: 75  VWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIK--CGFE 132

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           +D  +++SL+ MYG+   +  A + F+    R       DVV W+S++  + +NG   E 
Sbjct: 133 SDAVVETSLLCMYGEMSCLDDACKAFDTMPIR-------DVVAWSSIVLNFVQNGQASEG 185

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           + ++  M+    +PD V  ++V  ACS  G ++LG     ++V   ++E      + L+ 
Sbjct: 186 LDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRR-EIESNASLNNSLIV 244

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELD 399
           +  + G+L  A +L   +  R       + W  ++S  +  G F+  L   A  +  +++
Sbjct: 245 MYGKLGDLYSAERLFENVPCR-----MTAPWTPMISCYNQSGCFQEALNVFAKMQEFKME 299

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRE 427
           P+ V +  +L       C    +G+++E
Sbjct: 300 PNQVTMVGVL-------CACARLGRVKE 320


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 210/377 (55%), Gaps = 16/377 (4%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           A+K F  M   G  L      + L+A +S+       Q+ A V K        +G+AL+ 
Sbjct: 422 AVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLS 481

Query: 130 LYAKLLLIHDAELMFDEIP-VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
            Y K   +++ E +F  +   ++ V  N+++SGY   +L    ++LV  M   G   D F
Sbjct: 482 CYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSF 541

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T + +L ACA ++  E G +VHA  IR C  L +DV + S+L++MY KCG +  A + F 
Sbjct: 542 TFATILSACASVATLERGMEVHACGIRAC--LESDVVVGSALVDMYSKCGRIDYASRFFE 599

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           L   R       +V  W SM+  Y R+G+ ++ +KL+  M+++G  PD V FV V+SACS
Sbjct: 600 LMPLR-------NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACS 652

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
           H G V+ G E+F+ M   Y+L P  EH+SC+VDLL RAG+LD+    IN M  +     +
Sbjct: 653 HVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMK----PN 708

Query: 369 VSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLR 426
           V +W  +L AC   +    ELG+ AA+  LEL+P N   YV+L+N+YA    W+++ + R
Sbjct: 709 VLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKAR 768

Query: 427 ELMKEKGLKKDVGCSWI 443
             MKE  +KK+ GCSW+
Sbjct: 769 TAMKEAAVKKEAGCSWV 785



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 170/394 (43%), Gaps = 50/394 (12%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +IS + R G  + A   FS M   G+        +    S   +  R G++V
Sbjct: 267 RNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREV 326

Query: 109 QAHVTKSGWLSS-VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
            AHV ++G   + V +G+ L+++YAK   I DA  +F+ +  K+SV  N+L+SG  + + 
Sbjct: 327 HAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNEC 386

Query: 168 WAGGLELVRLMPAL--------------------------------GLDYDHFTLSALLR 195
                E+  LMP                                  G      T   +L 
Sbjct: 387 SEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILS 446

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           A + LS  E   Q+HA +++ C  L +D  + ++L+  YGKCG + +  ++F        
Sbjct: 447 AVSSLSLHEVSHQIHALVLKYC--LSDDTAIGNALLSCYGKCGEMNECEKIFARMSE--- 501

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
               +D V W SM+  Y  N    + + L   M+  G + D   F T++SAC+    ++ 
Sbjct: 502 ---TRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLER 558

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G+E     +    LE      S LVD+  + G +D A +    M  R     +V  W ++
Sbjct: 559 GMEVHACGIRAC-LESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-----NVYSWNSM 612

Query: 376 LS--ACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           +S  A H  G+  L KL  +  L+  P +   +V
Sbjct: 613 ISGYARHGHGEKAL-KLFTRMMLDGQPPDHVTFV 645



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 134/295 (45%), Gaps = 16/295 (5%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +LG+       ++ RN + +  +IS + +NG P  A   F  M   G   + YA  S+L 
Sbjct: 149 DLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALR 208

Query: 95  A--STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL-LIHDAELMFDEIPVKN 151
           A   +     + G Q+   ++K+ + S V V + LI +Y   L   +DA  +FD I ++N
Sbjct: 209 ACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRN 268

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           S+  N+++S Y          +L   M   GL +      A             GR+VHA
Sbjct: 269 SISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHA 328

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           ++IR   N  N V + + L+ MY K G +  A  VF L        + KD V W S++  
Sbjct: 329 HVIRTGLN-DNKVAIGNGLVNMYAKSGAIADACSVFELM-------VEKDSVSWNSLISG 380

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT-GQVKLGIEYFEWMVH 325
             +N   ++  +++  M     + D+V++ +VI A S +   V   ++YF  M+ 
Sbjct: 381 LDQNECSEDAAEMFSLM----PEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMR 431



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 132/306 (43%), Gaps = 21/306 (6%)

Query: 4   AHQFETGLLLICL---IIFQSRLMLPYTTCRHKKNLGTLTNCLKFL----NPRNPLPFNV 56
           +HQ    +L  CL       + L+  Y  C      G +  C K        R+ + +N 
Sbjct: 457 SHQIHALVLKYCLSDDTAIGNALLSCYGKC------GEMNECEKIFARMSETRDEVSWNS 510

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS +  N     A+    FM   G  LD++   + L+A  SV     G +V A   ++ 
Sbjct: 511 MISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRAC 570

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
             S V VGSAL+D+Y+K   I  A   F+ +P++N    N+++SGY         L+L  
Sbjct: 571 LESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFT 630

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M   G   DH T   +L AC+ +   E G + H   + +   L   V   S ++++ G+
Sbjct: 631 RMMLDGQPPDHVTFVGVLSACSHVGFVEEGFE-HFKSMSEVYRLSPRVEHFSCMVDLLGR 689

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR-NGYFKEVIKLYEAMLMNGTKP 295
            G + +     N         +  +V++W ++LG   R NG   E+ +    ML+     
Sbjct: 690 AGKLDEVGDFIN------SMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQ 743

Query: 296 DEVAFV 301
           + V +V
Sbjct: 744 NAVNYV 749



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 130/281 (46%), Gaps = 25/281 (8%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            +++     K G++ ++F+ + LI++Y ++  +  A+ +FDE+  +N V    L+SGY +
Sbjct: 118 ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 177

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRAC--AGLSAAEFGRQVHAYMIRKCCNLGN 222
                      R M   G   +H+   + LRAC  +G S  + G Q+H  + +     G+
Sbjct: 178 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKT--RYGS 235

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV + + LI MYG C      L   N A    +G   ++ + W S++ VY R G      
Sbjct: 236 DVVVCNVLISMYGSC------LDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAY 289

Query: 283 KLYEAMLMNGT----KP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
            L+ +M   G     KP D  +  +V+      G+ ++        ++D K+  G    +
Sbjct: 290 DLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGR-EVHAHVIRTGLNDNKVAIG----N 344

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            LV++  ++G +  A  +   M+++     SVS W +L+S 
Sbjct: 345 GLVNMYAKSGAIADACSVFELMVEK----DSVS-WNSLISG 380


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  231 bits (588), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 147/427 (34%), Positives = 226/427 (52%), Gaps = 49/427 (11%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +IS +   G    AL+    M   GI LD +   S + A  + +  + GKQV A+
Sbjct: 252 VAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAY 311

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC------EA 165
           V +    S  F  S L+ LY K    ++A  +F+++P K+ V  NALLSGY       EA
Sbjct: 312 VLRREDFSFHFDNS-LVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEA 370

Query: 166 KL------------W-------------AGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
           KL            W               GL+L   M   G +   +  S  +++CA L
Sbjct: 371 KLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVL 430

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQS--SLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            A   G+Q HA +++    +G D  + +  +LI MY KCG+V +A QVF           
Sbjct: 431 GAYCNGQQFHAQLVK----IGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMP------- 479

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
             D V W +++   G++G+  E + +YE ML  G +PD + F+TV++ACSH G V  G +
Sbjct: 480 CLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRK 539

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           YF  M   Y++ PG +HY+ L+DLLCR+G+  +A  +I  +  +     +  +W ALLS 
Sbjct: 540 YFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFK----PTAEIWEALLSG 595

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           C   G  ELG +AA K   L P + G Y++LSN+YA    W+E+ ++R+LM+++G+KK+V
Sbjct: 596 CRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEV 655

Query: 439 GCSWIEV 445
            CSWIE+
Sbjct: 656 ACSWIEM 662



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 137/349 (39%), Gaps = 50/349 (14%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           ++G      K +  +N L + ++IS    NG     LK FS M   G     YA   ++ 
Sbjct: 366 HIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIK 425

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           +   +     G+Q  A + K G+ SS+  G+ALI +YAK  ++ +A+ +F  +P  +SV 
Sbjct: 426 SCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVS 485

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            NAL++   +       +++   M   G+  D  T   +L AC+           HA   
Sbjct: 486 WNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACS-----------HA--- 531

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
                                  GLV +  + FN         I      +  ++ +  R
Sbjct: 532 -----------------------GLVDQGRKYFN--SMETVYRIPPGADHYARLIDLLCR 566

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +G F E   + E++     KP    +  ++S C   G ++LGI     +  D      PE
Sbjct: 567 SGKFSEAESIIESLPF---KPTAEIWEALLSGCRVHGNMELGI-----IAADKLFGLIPE 618

Query: 335 H---YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           H   Y  L ++    G+ ++  ++   M DRG        W  + +  H
Sbjct: 619 HDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVH 667



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 145/331 (43%), Gaps = 50/331 (15%)

Query: 140 AELMFDEIPV--KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
           A  +F+E PV  +++V  NA+++G+         + L   M   G   D FT +++L   
Sbjct: 99  ARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGL 158

Query: 198 AGLSAAEFG-RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG----LVTKALQVFN---- 248
           A +   E    Q HA  ++     G    + ++L+ +Y +C     L+  A +VF+    
Sbjct: 159 ALVVDDEKQCVQFHAAALKS--GAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPE 216

Query: 249 ---------LAGHRLEG------------EINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
                    + G+   G            + N  +V + +M+  Y   G ++E +++   
Sbjct: 217 KDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRR 276

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL--EPGPEHY-SCLVDLLC 344
           M+ +G + DE  + +VI AC++   ++LG +     VH Y L  E    H+ + LV L  
Sbjct: 277 MVSSGIELDEFTYPSVIRACANARLLQLGKQ-----VHAYVLRREDFSFHFDNSLVTLYY 331

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           + G+ ++A  +  +M      +  +  W ALLS     G     KL  +   E+   N+ 
Sbjct: 332 KCGKFNEARAIFEKM-----PAKDLVSWNALLSGYVSSGHIGEAKLIFK---EMKEKNIL 383

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
            ++++ +  A+    +E  +L   MK +G +
Sbjct: 384 SWMIMISGLAENGFGEEGLKLFSCMKREGFE 414


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  230 bits (587), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 213/399 (53%), Gaps = 13/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N  +S     G     L  F  M   G   + Y   S L + + + D  +G+QV
Sbjct: 479 RDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQV 538

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            AH+ K+    + FV +ALID+YAK + + DA++ F+ + V++      +++ Y +    
Sbjct: 539 HAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQG 598

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L   R M   G+  + FTL+  L  C+ L++ E G+Q+H+ M+ K  ++ +D+F+ S
Sbjct: 599 EKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHS-MVFKSGHV-SDMFVGS 656

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG + +A  +F       E  I +D + W +++  Y +NG   + +  +  M
Sbjct: 657 ALVDMYAKCGCMEEAEALF-------EALIRRDTIAWNTIICGYAQNGQGNKALTAFRMM 709

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  G  PD V F  ++SACSH G V+ G E+F  M  D+ + P  +H +C+VD+L R G+
Sbjct: 710 LDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGK 769

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            D+    I +M      S +  +W  +L A        LG+ AA K  EL P     Y++
Sbjct: 770 FDELEDFIQKM----QLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYIL 825

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSN++A    WD++ ++R LM  KG+KK+ GCSW+E  G
Sbjct: 826 LSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANG 864



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 172/360 (47%), Gaps = 18/360 (5%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  CR+      +   L  +  R+ + +  +I      G    ++  F  M   GI  + 
Sbjct: 157 YAKCRYSAYARLV---LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNE 213

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           + L + L A +       GKQ+ A   K G L  +FVGSAL+DLYAK   I  A  MF  
Sbjct: 214 FTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIG 273

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +P +N V  N LL+GY +     G L+L   M  L +  + FTL+ +L+ CA     + G
Sbjct: 274 MPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG 333

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           + +H+ +I KC   GN+ F+   L++MY KCGL   A+ VF             D+V+W+
Sbjct: 334 QVIHSLII-KCGYEGNE-FIGCGLVDMYSKCGLAIDAIGVFKTIK-------KPDIVVWS 384

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +++    + G  +E IKL+  M +  T P++    +++SA ++TG ++ G +     V  
Sbjct: 385 ALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACVWK 443

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           Y  E      + LV +  + G +    KL   M+DR      +  W A LS  HDCG ++
Sbjct: 444 YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDR-----DLISWNAYLSGLHDCGMYD 498



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 156/324 (48%), Gaps = 18/324 (5%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            K +   + + ++ +I+   + G    ++K F  M +     + Y +CS L+A+T+  + 
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           ++G+ + A V K G+ + V V +AL+ +Y K   +HD   +++ +  ++ +  NA LSG 
Sbjct: 432 QYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGL 491

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +  ++   L +   M   G   + +T  ++L +C+ L    +GRQVHA++I+    L +
Sbjct: 492 HDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKN--QLDD 549

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           + F+ ++LI+MY KC  +  A   FN    R       D+  WT ++  Y +    ++ +
Sbjct: 550 NNFVCTALIDMYAKCMYLEDADVAFNRLSVR-------DLFTWTVIITNYAQTNQGEKAL 602

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
             +  M   G KP+E      +S CS    ++ G +     +H    + G        S 
Sbjct: 603 NYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQ-----LHSMVFKSGHVSDMFVGSA 657

Query: 339 LVDLLCRAGELDKAWKLINEMLDR 362
           LVD+  + G +++A  L   ++ R
Sbjct: 658 LVDMYAKCGCMEEAEALFEALIRR 681



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+   + V+I+++ +      AL  F  M   G+  + + L   L+  +S+     G
Sbjct: 577 LSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ + V KSG +S +FVGSAL+D+YAK   + +AE +F+ +  ++++  N ++ GY + 
Sbjct: 637 QQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQN 696

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L   R+M   G+  D  T + +L AC+     E G++    M R    +   V 
Sbjct: 697 GQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRD-FGISPTVD 755

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
             + ++++ G+ G   +      L     + +++++ ++W ++LG
Sbjct: 756 HCACMVDILGRVGKFDE------LEDFIQKMQLSQNALIWETVLG 794



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 124/265 (46%), Gaps = 23/265 (8%)

Query: 126 ALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY 185
           +L+++YAK      A L+  ++P ++ V   AL+ G          + L + M   G+  
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           + FTL+  L+AC+   A + G+Q+HA   +    L  D+F+ S+L+++Y KCG +  A +
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFK--LGLLLDLFVGSALVDLYAKCGEIELASK 269

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
           +F        G   ++ V W  +L  Y + G    V+KL+ +M+    K +E    TV+ 
Sbjct: 270 MF-------IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLE---PGPEHYSC-LVDLLCRAGELDKAWKLINEMLD 361
            C+++  +K G      ++H   ++    G E   C LVD+  + G    A  +   +  
Sbjct: 323 GCANSKNLKQG-----QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI-- 375

Query: 362 RGHGSSSVSMWGALLSACHDCGKFE 386
                  + +W AL++     G+ E
Sbjct: 376 ---KKPDIVVWSALITCLDQQGQSE 397



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 19/190 (10%)

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           S++LR CA   +    + +H  +++   N   D  +  SL+ +Y KC     A  V    
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVIN--PDSHLWVSLVNVYAKCRYSAYARLV---- 169

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
              L    ++DVV WT+++      G+  + I L++ M   G  P+E    T + ACS  
Sbjct: 170 ---LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLC 226

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
             + LG +        +KL    + +  S LVDL  + GE++ A K+   M ++   +  
Sbjct: 227 MALDLGKQMH---AQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVT-- 281

Query: 369 VSMWGALLSA 378
              W  LL+ 
Sbjct: 282 ---WNVLLNG 288


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  230 bits (587), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 213/399 (53%), Gaps = 13/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N  +S     G     L  F  M   G   + Y   S L + + + D  +G+QV
Sbjct: 479 RDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQV 538

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            AH+ K+    + FV +ALID+YAK + + DA++ F+ + V++      +++ Y +    
Sbjct: 539 HAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQG 598

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L   R M   G+  + FTL+  L  C+ L++ E G+Q+H+ M+ K  ++ +D+F+ S
Sbjct: 599 EKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHS-MVFKSGHV-SDMFVGS 656

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG + +A  +F       E  I +D + W +++  Y +NG   + +  +  M
Sbjct: 657 ALVDMYAKCGCMEEAEALF-------EALIRRDTIAWNTIICGYAQNGQGNKALTAFRMM 709

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  G  PD V F  ++SACSH G V+ G E+F  M  D+ + P  +H +C+VD+L R G+
Sbjct: 710 LDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGK 769

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            D+    I +M      S +  +W  +L A        LG+ AA K  EL P     Y++
Sbjct: 770 FDELEDFIQKM----QLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYIL 825

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSN++A    WD++ ++R LM  KG+KK+ GCSW+E  G
Sbjct: 826 LSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANG 864



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 172/360 (47%), Gaps = 18/360 (5%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  CR+      +   L  +  R+ + +  +I      G    ++  F  M   GI  + 
Sbjct: 157 YAKCRYSAYARLV---LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNE 213

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           + L + L A +       GKQ+ A   K G L  +FVGSAL+DLYAK   I  A  MF  
Sbjct: 214 FTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIG 273

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +P +N V  N LL+GY +     G L+L   M  L +  + FTL+ +L+ CA     + G
Sbjct: 274 MPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQG 333

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           + +H+ +I KC   GN+ F+   L++MY KCGL   A+ VF             D+V+W+
Sbjct: 334 QVIHSLII-KCGYEGNE-FIGCGLVDMYSKCGLAIDAIGVFKTIK-------KPDIVVWS 384

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +++    + G  +E IKL+  M +  T P++    +++SA ++TG ++ G +     V  
Sbjct: 385 ALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACVWK 443

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           Y  E      + LV +  + G +    KL   M+DR      +  W A LS  HDCG ++
Sbjct: 444 YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDR-----DLISWNAYLSGLHDCGMYD 498



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 156/324 (48%), Gaps = 18/324 (5%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            K +   + + ++ +I+   + G    ++K F  M +     + Y +CS L+A+T+  + 
Sbjct: 372 FKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNL 431

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           ++G+ + A V K G+ + V V +AL+ +Y K   +HD   +++ +  ++ +  NA LSG 
Sbjct: 432 QYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGL 491

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +  ++   L +   M   G   + +T  ++L +C+ L    +GRQVHA++I+    L +
Sbjct: 492 HDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKN--QLDD 549

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           + F+ ++LI+MY KC  +  A   FN    R       D+  WT ++  Y +    ++ +
Sbjct: 550 NNFVCTALIDMYAKCMYLEDADVAFNRLSVR-------DLFTWTVIITNYAQTNQGEKAL 602

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
             +  M   G KP+E      +S CS    ++ G +     +H    + G        S 
Sbjct: 603 NYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQ-----LHSMVFKSGHVSDMFVGSA 657

Query: 339 LVDLLCRAGELDKAWKLINEMLDR 362
           LVD+  + G +++A  L   ++ R
Sbjct: 658 LVDMYAKCGCMEEAEALFEALIRR 681



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+   + V+I+++ +      AL  F  M   G+  + + L   L+  +S+     G
Sbjct: 577 LSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ + V KSG +S +FVGSAL+D+YAK   + +AE +F+ +  ++++  N ++ GY + 
Sbjct: 637 QQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQN 696

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L   R+M   G+  D  T + +L AC+     E G++    M R    +   V 
Sbjct: 697 GQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRD-FGISPTVD 755

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
             + ++++ G+ G   +      L     + +++++ ++W ++LG
Sbjct: 756 HCACMVDILGRVGKFDE------LEDFIQKMQLSQNALIWETVLG 794



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 124/265 (46%), Gaps = 23/265 (8%)

Query: 126 ALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY 185
           +L+++YAK      A L+  ++P ++ V   AL+ G          + L + M   G+  
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           + FTL+  L+AC+   A + G+Q+HA   +    L  D+F+ S+L+++Y KCG +  A +
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFK--LGLLLDLFVGSALVDLYAKCGEIELASK 269

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
           +F        G   ++ V W  +L  Y + G    V+KL+ +M+    K +E    TV+ 
Sbjct: 270 MF-------IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLE---PGPEHYSC-LVDLLCRAGELDKAWKLINEMLD 361
            C+++  +K G      ++H   ++    G E   C LVD+  + G    A  +   +  
Sbjct: 323 GCANSKNLKQG-----QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI-- 375

Query: 362 RGHGSSSVSMWGALLSACHDCGKFE 386
                  + +W AL++     G+ E
Sbjct: 376 ---KKPDIVVWSALITCLDQQGQSE 397



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 19/190 (10%)

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           S++LR CA   +    + +H  +++   N   D  +  SL+ +Y KC     A  V    
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVIN--PDSHLWVSLVNVYAKCRYSAYARLV---- 169

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
              L    ++DVV WT+++      G+  + I L++ M   G  P+E    T + ACS  
Sbjct: 170 ---LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLC 226

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
             + LG +        +KL    + +  S LVDL  + GE++ A K+   M ++   +  
Sbjct: 227 MALDLGKQMH---AQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVT-- 281

Query: 369 VSMWGALLSA 378
              W  LL+ 
Sbjct: 282 ---WNVLLNG 288


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  230 bits (587), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 144/403 (35%), Positives = 216/403 (53%), Gaps = 32/403 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGI----FLDTYALCSSLTASTSVKDAR 103
           ++   +N +I+ + R G    A + F S M  + +     +  Y  C  L  ++      
Sbjct: 153 KDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKAS------ 206

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV-KNSVCANALLSGY 162
                  H  K   +  V   +A+I  Y K   +  AE MF ++ V KN V  NA++SGY
Sbjct: 207 -------HFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGY 259

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            E      GL+L R M   G+  +   LS+ L  C+ LSA + GRQ+H  + +    L N
Sbjct: 260 VENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSK--STLCN 317

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV   +SLI MY KCG +  A ++F +          KDVV W +M+  Y ++G   + +
Sbjct: 318 DVTALTSLISMYCKCGELGDAWKLFEVMK-------KKDVVAWNAMISGYAQHGNADKAL 370

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L+  M+ N  +PD + FV V+ AC+H G V +G+ YFE MV DYK+EP P+HY+C+VDL
Sbjct: 371 CLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDL 430

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG+L++A KLI  M  R H     +++G LL AC      EL + AA+K L+L+  N
Sbjct: 431 LGRAGKLEEALKLIRSMPFRPHA----AVFGTLLGACRVHKNVELAEFAAEKLLQLNSQN 486

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              YV L+N+YA    W+++ ++R+ MKE  + K  G SWIE+
Sbjct: 487 AAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEI 529



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 138/327 (42%), Gaps = 31/327 (9%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
            P N +I+   R+G    AL+ F     HG+        +SL    S   +R    ++AH
Sbjct: 62  FPLNKIIARCVRSGDIDGALRVF-----HGMRAKNTITWNSLLIGISKDPSRM---MEAH 113

Query: 112 -VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            +         F  + ++  Y + +    A+  FD +P K++   N +++GY       G
Sbjct: 114 QLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYAR----RG 169

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            +E  R +    ++ +  + +A++     +   +  +  H + +         V   +++
Sbjct: 170 EMEKARELFYSMMEKNEVSWNAMI--SGYIECGDLEKASHFFKVAPV----RGVVAWTAM 223

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           I  Y K   V  A  +F       +  +NK++V W +M+  Y  N   ++ +KL+ AML 
Sbjct: 224 ITGYMKAKKVELAEAMFK------DMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLE 277

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G +P+     + +  CS    ++LG +  + +V    L       + L+ + C+ GEL 
Sbjct: 278 EGIRPNSSGLSSALLGCSELSALQLGRQIHQ-IVSKSTLCNDVTALTSLISMYCKCGELG 336

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLS 377
            AWKL   M  +      V  W A++S
Sbjct: 337 DAWKLFEVMKKK-----DVVAWNAMIS 358


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  230 bits (587), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 131/397 (32%), Positives = 214/397 (53%), Gaps = 11/397 (2%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +   G+   AL+ F  M    +  D   + S ++A         G+QV
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +   G+ S++ + +ALIDLY K   +  A  +F+ +  K+ +  N L+ GY    L+
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M   G   +  T+ ++L ACA L A E GR +H Y+ ++   + N    ++
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 362

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A QVF       +  +N+ +  W +M+  +  +G       ++  M
Sbjct: 363 SLIDMYAKCGDIEAAQQVF-------DSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 415

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             N  +PD++ FV ++SACSH+G + LG   F  M  DYK+ P  EHY C++DLL  +G 
Sbjct: 416 RKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGL 475

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +A ++IN M     G     +W +LL AC   G  ELG+  AQ  ++++P N G YV+
Sbjct: 476 FKEAEEMINTMEMEPDG----VIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVL 531

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W+E+ ++R L+ +KG+KK  GCS IE+
Sbjct: 532 LSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEI 568



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 207/448 (46%), Gaps = 60/448 (13%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA   +TGL      +  S+L+       H   L    +  + +   N L +N +    
Sbjct: 6   IHAQMIKTGLHNTNYAL--SKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +  P+ AL  +  M   G+  + Y     L +    K  R G+Q+  HV K G+   +
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 122 FVGSALIDLYAKLLLIHDA-------------------------------ELMFDEIPVK 150
           +V ++LI +Y +   + DA                               + MFDEIP+K
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 183

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V  NA++SGY E       LEL + M    +  D  T+ +++ ACA  ++ E GRQVH
Sbjct: 184 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVH 243

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           +++       G+++ + ++LI++Y KCG V  A  +F       EG   KDV+ W +++G
Sbjct: 244 SWIDDH--GFGSNLKIVNALIDLYIKCGEVETACGLF-------EGLSYKDVISWNTLIG 294

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--- 327
            Y     +KE + L++ ML +G  P++V  ++++ AC+H G +++G     W +H Y   
Sbjct: 295 GYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIG----RW-IHVYINK 349

Query: 328 ---KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL--SACHDC 382
               +     H + L+D+  + G+++ A ++ + +L+R     S+S W A++   A H  
Sbjct: 350 RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNR-----SLSSWNAMIFGFAMHGR 404

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLS 410
                   +  +  E++P ++    +LS
Sbjct: 405 ANAAFDIFSRMRKNEIEPDDITFVGLLS 432


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  230 bits (587), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 222/403 (55%), Gaps = 18/403 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH-VHGIFLDTYALCSSLTASTSVKDARF 104
           +  ++   +  +++ + +   P  AL  +S M  V     + + +  ++ A+ +VK  R 
Sbjct: 177 MTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRR 236

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK++  H+ ++G  S   + S+L+D+Y K   I +A  +FD+I  K+ V   +++  Y +
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND- 223
           +  W  G  L   +       + +T + +L ACA L+  E G+QVH YM R    +G D 
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTR----VGFDP 352

Query: 224 -VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
             F  SSL++MY KCG +  A        H ++G    D+V WTS++G   +NG   E +
Sbjct: 353 YSFASSSLVDMYTKCGNIESA-------KHVVDGCPKPDLVSWTSLIGGCAQNGQPDEAL 405

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           K ++ +L +GTKPD V FV V+SAC+H G V+ G+E+F  +   ++L    +HY+CLVDL
Sbjct: 406 KYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDL 465

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L R+G  ++   +I+EM  +     S  +W ++L  C   G  +L + AAQ+  +++P N
Sbjct: 466 LARSGRFEQLKSVISEMPMK----PSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPEN 521

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              YV ++N+YA    W+E G++R+ M+E G+ K  G SW E+
Sbjct: 522 PVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEI 564



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 152/331 (45%), Gaps = 55/331 (16%)

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           C+ +   +  +    GK+V  H+  SG++  + + + L+ +YAK   + DA  +FDE+P 
Sbjct: 89  CNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPN 148

Query: 150 KNSVCANALLSGYCEAKL------------------WAG-------------GLELVRLM 178
           ++    N +++GY E  L                  W                L L  LM
Sbjct: 149 RDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLM 208

Query: 179 PALGLDYDH-FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
             +     + FT+S  + A A +     G+++H +++R    L +D  + SSL++MYGKC
Sbjct: 209 QRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVR--AGLDSDEVLWSSLMDMYGKC 266

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G + +A  +F+         + KDVV WTSM+  Y ++  ++E   L+  ++ +  +P+E
Sbjct: 267 GCIDEARNIFDKI-------VEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNE 319

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAW 353
             F  V++AC+     +LG +     VH Y    G + Y    S LVD+  + G ++ A 
Sbjct: 320 YTFAGVLNACADLTTEELGKQ-----VHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAK 374

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            +++     G     +  W +L+  C   G+
Sbjct: 375 HVVD-----GCPKPDLVSWTSLIGGCAQNGQ 400


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  230 bits (587), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 226/422 (53%), Gaps = 20/422 (4%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTY 87
           R  ++L +       +  R+   ++ ++S + R+G P  AL  +  M     +    + +
Sbjct: 106 RSPRHLPSARELFDRMPQRDHFAWSALVSGYARHGQPEAALALYRRMQEEPGNDGADNEF 165

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS---VFVGSALIDLYAKLLLIHDAELMF 144
              S+L A+ + +  R G+++  HV + G  ++     + SAL D+YAK   + DA  +F
Sbjct: 166 TASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVF 225

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAA 203
           D +PV+++V   A++  Y +      G  L + ++   G+  + FT + +LRACA  +  
Sbjct: 226 DRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVE 285

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
            FGRQVH  M +     G+  F +S+L+ MY KCG +  A++VF       E     D+V
Sbjct: 286 SFGRQVHGRMAKS--GTGDSCFAESALLRMYSKCGDMGSAVRVF-------EAMAKPDLV 336

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            WT+++  Y +NG  +E ++ ++  L +G KPD V FV V+SAC+H G V  G+E F  +
Sbjct: 337 SWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSI 396

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
              Y +E   +HY+C++DLL R+G+ ++A K+I  M  +     +  +W +LL  C    
Sbjct: 397 KEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVK----PNKFLWASLLGGCRIHK 452

Query: 384 KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
              L + AA+   E++P N   YV L+N+YA   ++DE+  +R +M+ KG+ K    SWI
Sbjct: 453 NVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWI 512

Query: 444 EV 445
           EV
Sbjct: 513 EV 514


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  230 bits (587), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 230/442 (52%), Gaps = 18/442 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA   + G      ++  + L   Y+ CR    +  L    K   P + + +  +I  +
Sbjct: 274 IHAQTIKQGFNETAYVV--NTLGTMYSKCRKPDYVMRLFG--KMSTP-DVVSWTNLIMTY 328

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            + G    AL  F  M    +  + Y   S ++A  ++   ++G+Q+  H  + G + ++
Sbjct: 329 VQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDAL 388

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            V +++I LY+K  L+ +A L+FD +  K+ +  + ++S YC+          +  M   
Sbjct: 389 SVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSRE 448

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G   + F L+++L  C  ++  E G+QVHAY +  C  L ++  + S+LI MY + G + 
Sbjct: 449 GPKPNEFALASVLSVCGSMALLEPGKQVHAYAL--CIGLDHETMVHSALISMYSRSGNLQ 506

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           +A ++F+          N D+V WT+M+  Y  +GY +E I L+E +   G  PD V F+
Sbjct: 507 EASKIFDSIK-------NNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFI 559

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            +++AC+H G V LG  Y++ M ++Y++ P  EHY C++DLLCRAG L +A  ++  M  
Sbjct: 560 GILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNM-- 617

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
                    +W  LL AC D G  +    AA++ L L P++ G ++ L+N+Y+     +E
Sbjct: 618 --PFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREE 675

Query: 422 IGQLRELMKEKGLKKDVGCSWI 443
              +R+LMK KG+ K+ G SWI
Sbjct: 676 AAHVRKLMKSKGVIKEPGWSWI 697



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 124/269 (46%), Gaps = 10/269 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQ 107
           R+ + +  +I+ +    +   AL  FS M V  G+  D + +  +L A     +  FG+ 
Sbjct: 113 RDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSVALKACALGMNVYFGEL 172

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +     KSG ++SVFV SAL+D+Y K+        +F+ +  +N V   A++ G   A  
Sbjct: 173 LHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGC 232

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              GL     M    + YD  T +  L+A A      +G+ +HA  I++  N     ++ 
Sbjct: 233 SLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFN--ETAYVV 290

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L  MY KC      +++F             DVV WT+++  Y + G  +  +  ++ 
Sbjct: 291 NTLGTMYSKCRKPDYVMRLFGKMS-------TPDVVSWTNLIMTYVQMGDEERALDAFKR 343

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           M  +   P+E  F +VISAC++    K G
Sbjct: 344 MRKSDVSPNEYTFASVISACANLAITKWG 372


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  230 bits (587), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 147/450 (32%), Positives = 234/450 (52%), Gaps = 24/450 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVV 57
            +H H  + G      I  Q+ LM  Y+ C      G L +  K  +    ++ + +  +
Sbjct: 158 QLHCHSTKLGFASDAYI--QNTLMNMYSNC------GCLVSARKVFDKMVNKSVVSWATM 209

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I  + +   P  A+K F  M +  +  +   L + LTA    +D    KQV  ++ ++G 
Sbjct: 210 IGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGI 269

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
                + SAL+D+Y K      A  +F+++P KN  C N +++G+ E   +   L L   
Sbjct: 270 GFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNE 329

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  D  T+++LL AC  L A E G+ +H Y+ ++   +  DV + ++L++MY KC
Sbjct: 330 MQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE--KIEVDVALGTALVDMYAKC 387

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G +  A++VF       +    KDV+ WT+++      G   + ++L+  M M+  KPD 
Sbjct: 388 GSIESAMRVF-------QEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDA 440

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           + FV V++ACSH G V  GI YF  M + Y ++P  EHY C+VD+L RAG + +A  LI 
Sbjct: 441 ITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQ 500

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
            M      +    +   LLSAC   G   + + AAQ+ +ELDP N G YV+LSN+Y+   
Sbjct: 501 NM----PMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMK 556

Query: 418 MWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            W+   ++RELM E+ +KK  GCS IEV G
Sbjct: 557 NWEAAKKMRELMVERNIKKPPGCSAIEVGG 586



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 166/374 (44%), Gaps = 70/374 (18%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD------AELMFDEIPVKNSVCANALL 159
           KQ+ A + ++      F  S ++   A    +HD      A L+F++IP   +   N+++
Sbjct: 57  KQIHAQMLRTCLFVDPFSASKIVAFCA----LHDSGSLPYARLVFNQIPNPTTFTCNSII 112

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
            GY    L    +   +LM   GLD D FT  +L ++C  L     G+Q+H +  +    
Sbjct: 113 RGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTK--LG 167

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
             +D ++Q++L+ MY  CG +  A +VF       +  +NK VV W +M+G Y +     
Sbjct: 168 FASDAYIQNTLMNMYSNCGCLVSARKVF-------DKMVNKSVVSWATMIGAYAQWDLPH 220

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--- 336
           E IKL+  M +   KP+E+  V V++AC+ +  ++   +     VH Y  E G   +   
Sbjct: 221 EAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQ-----VHKYIDETGIGFHTVL 275

Query: 337 -SCLVDLLCRAG-------------------------------ELDKAWKLINEMLDRGH 364
            S L+D+ C+ G                               + ++A  L NEM   G 
Sbjct: 276 TSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGV 335

Query: 365 GSSSVSMWGALLSACHDCGKFELGK----LAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
               V+M  +LL AC   G  ELGK       ++ +E+D   V +   L ++YAK    +
Sbjct: 336 KGDKVTM-ASLLIACTHLGALELGKWLHVYIEKEKIEVD---VALGTALVDMYAKCGSIE 391

Query: 421 EIGQLRELMKEKGL 434
              ++ + M EK +
Sbjct: 392 SAMRVFQEMPEKDV 405



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 164/358 (45%), Gaps = 27/358 (7%)

Query: 43  LKFLNPRNPLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           L F    NP  F  N +I  +     P  A+  +  M + G+  D +   S   +   + 
Sbjct: 95  LVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLC 154

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           +   GKQ+  H TK G+ S  ++ + L+++Y+    +  A  +FD++  K+ V    ++ 
Sbjct: 155 E---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIG 211

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            Y +  L    ++L R M    +  +  TL  +L ACA     E  +QVH Y+      +
Sbjct: 212 AYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDET--GI 269

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
           G    + S+L+++Y KCG    A  +FN           K++  W  M+  +  +  ++E
Sbjct: 270 GFHTVLTSALMDVYCKCGCYPLARDLFNKMPE-------KNLFCWNIMINGHVEDSDYEE 322

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            + L+  M ++G K D+V   +++ AC+H G ++LG ++    +   K+E      + LV
Sbjct: 323 ALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALV 381

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           D+  + G ++ A ++  EM ++      V  W AL+     CG+         KALEL
Sbjct: 382 DMYAKCGSIESAMRVFQEMPEK-----DVMTWTALIVGLAMCGQ-------GLKALEL 427


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 245/450 (54%), Gaps = 31/450 (6%)

Query: 7    FETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS 66
            FET L +       S L+  Y+ C   K+   L + +     RN + +  +I+ + +N  
Sbjct: 1173 FETDLFV------SSALIDMYSKCGQLKDARALFDEIPL---RNVVSWTSMITGYVQNEQ 1223

Query: 67   PLYALKTF-SFMHV-------HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
               AL  F  F+         + + LD+  + S L+A + V      + V   V K G+ 
Sbjct: 1224 ADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFD 1283

Query: 119  SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-L 177
             S+ VG+ L+D YAK      ++ +FD +  K+ +  N++++ Y ++ L    LE+   +
Sbjct: 1284 GSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGM 1343

Query: 178  MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
            +  +G+ Y+  TLSA+L ACA   A   G+ +H  +I+   +L  +V + +S+I+MY KC
Sbjct: 1344 VRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIK--MDLEYNVCVGTSIIDMYCKC 1401

Query: 238  GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
            G V  A + F+    R++    K+V  WT+M+  YG +G  KE + ++  M+  G KP+ 
Sbjct: 1402 GRVEMAKKTFD----RMK---EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 1454

Query: 298  VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
            + FV+V++ACSH G V+ G  +F  M H Y +EPG EHY C+VDL  RAG L++A+ LI 
Sbjct: 1455 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 1514

Query: 358  EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
             M  +        +WG+LL AC      +LG++AAQK  ELDP N G YV+LSNLYA   
Sbjct: 1515 RMKMK----PDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAG 1570

Query: 418  MWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             W ++ ++R LMK + L K  G S +E+ G
Sbjct: 1571 RWADVERMRMLMKNRQLVKPPGFSLVELKG 1600



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 162/350 (46%), Gaps = 42/350 (12%)

Query: 43  LKFLNPRNPLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           L F   +NP  F  N++I     NG    AL  +  M   GI  D +     + A T+  
Sbjct: 80  LLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFL 139

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL-------------------------- 134
               GK V   + K G+   VFV + LID Y K                           
Sbjct: 140 SIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVIS 199

Query: 135 -LL----IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
            L+    + +A  +FDEIP KN V   A+++GY   +     LEL + M A  +  + +T
Sbjct: 200 GLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYT 259

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           + +L++AC  +     GR +H Y I+ C  +G  V++ ++LI+MY KCG +  A++VF  
Sbjct: 260 MVSLIKACTEMGILTLGRGIHDYAIKNCIEIG--VYLGTALIDMYSKCGSIKDAIEVF-- 315

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                E    K +  W SM+   G +G  +E + L+  M     KPD + F+ V+ AC H
Sbjct: 316 -----ETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVH 370

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
              VK G  YF  M   Y + P PEHY C+ +L  R+  LD+A+K   E+
Sbjct: 371 IKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 183/382 (47%), Gaps = 39/382 (10%)

Query: 14   ICLIIFQSRLMLPYTTCRHK-----KNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPL 68
            + L + + + +L + + R +      NL T     K+++  N   +N VI+D  R G  +
Sbjct: 1067 VFLRVAEDQFLLGFPSSRRRPVSLSSNLATW--FYKYVDKSNVHSWNSVIADLARGGDSV 1124

Query: 69   YALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
             AL+ FS +   G+     +   ++ + +++ D   G+         G+ + +FV SALI
Sbjct: 1125 EALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALI 1184

Query: 129  DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL--------ELVRLMPA 180
            D+Y+K   + DA  +FDEIP++N V   ++++GY + +     L        E   +   
Sbjct: 1185 DMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDG 1244

Query: 181  LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
              +  D   + ++L AC+ +S       VH ++++K       + + ++L++ Y KCG  
Sbjct: 1245 NNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKK--GFDGSIGVGNTLMDAYAKCGQP 1302

Query: 241  TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN-GTKPDEVA 299
              + +VF+           KD + W SM+ VY ++G   E ++++  M+ + G + + V 
Sbjct: 1303 LVSKKVFDWMEE-------KDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 1355

Query: 300  FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKL 355
               V+ AC+H G ++ G       +HD  ++   E+  C    ++D+ C+ G ++ A K 
Sbjct: 1356 LSAVLLACAHAGALRAG-----KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 1410

Query: 356  INEMLDRGHGSSSVSMWGALLS 377
             + M ++     +V  W A+++
Sbjct: 1411 FDRMKEK-----NVKSWTAMVA 1427



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 152/334 (45%), Gaps = 42/334 (12%)

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           K+ +  +Q+ A + +SG  +   +   LI LY+    I  A L+F +I    +   N ++
Sbjct: 38  KNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLII 97

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
                  L    L L + M   G+  D FT   +++AC    + + G+ VH  +I+    
Sbjct: 98  RANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKY--G 155

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAG----------HRLEG 256
              DVF+Q++LI+ Y KCG    AL+VF              ++G           R+  
Sbjct: 156 FSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFD 215

Query: 257 EI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
           EI +K+VV WT+M+  Y RN   +E ++L++ M      P+E   V++I AC+  G + L
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTL 275

Query: 316 GIEYFEWMVHDYK----LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
           G       +HDY     +E G    + L+D+  + G +  A ++   M  +     S+  
Sbjct: 276 G-----RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-----SLPT 325

Query: 372 WGALLSA--CHDCGKFELGKLAAQKALELDPHNV 403
           W +++++   H  G+  L   +  + + + P  +
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 359



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 18/228 (7%)

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           RQ+HA +IR    L ND  +   LI +Y   G +  A+ +F    ++++   N     W 
Sbjct: 44  RQIHAKIIRS--GLSNDQLLTRKLIHLYSTHGRIAYAILLF----YQIQ---NPCTFTWN 94

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
            ++     NG  ++ + LY+ M+  G   D+  F  VI AC++   + LG +     +  
Sbjct: 95  LIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVHGSLIK 153

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           Y         + L+D   + G    A K+  +M  R     +V  W  ++S    CG  +
Sbjct: 154 YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-----NVVSWTTVISGLISCGDLQ 208

Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
             +       E+   NV  +  + N Y +    +E  +L + M+ + +
Sbjct: 209 EARRIFD---EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 233/431 (54%), Gaps = 46/431 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           R+ + +N +IS + + G  L AL  FS M +   +  D + L S L+A  +++    GKQ
Sbjct: 237 RDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ 296

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAK--------LLLIHD-------------------- 139
           + A++ ++   +S  VG+ALI +YAK        L++ H+                    
Sbjct: 297 IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKL 356

Query: 140 -----AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
                A  +F+++  ++ V   A++ GY +  LW   LEL RLM   G + + +TL+A+L
Sbjct: 357 GNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAML 416

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
              + L+  E G+Q+HA  I+   +    V   ++LI MY K G +  A +VF+L   + 
Sbjct: 417 SVSSSLTILEHGKQIHASAIKAGESSTPSV--TNALIAMYAKTGNINVAKRVFDLPNGK- 473

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                K++V WTSM+    ++G  KE I L+E ML  G KPD + +V V+SAC+H G V+
Sbjct: 474 -----KEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVE 528

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G +Y+  M   +++EP   HY+C++DL  RAG L +A+  I  M       +    WG+
Sbjct: 529 QGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIA----WGS 584

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL++C      +L K+AA++ L +DP N G Y+ L+N+Y+    W+   Q R+LMK++G+
Sbjct: 585 LLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGV 644

Query: 435 KKDVGCSWIEV 445
           +K+ G SWI +
Sbjct: 645 RKEKGISWIHI 655



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 175/401 (43%), Gaps = 73/401 (18%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L  S  +KD   G+ V   + K G    V++ + L+  YAK   +  A  +FDE+P+K++
Sbjct: 17  LQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKST 76

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMP--------ALGLDYD------------------ 186
              N L+SGY +   +     L+  MP        A+ + Y+                  
Sbjct: 77  FSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136

Query: 187 -----HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG--- 238
                 FT+S +L +CA     + GR++H+++++    LG+ V + +SL+ MY KCG   
Sbjct: 137 RVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVK--LGLGSCVPVATSLLNMYAKCGDPV 194

Query: 239 -------------------LVTKALQV--FNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
                              L++  +Q   F LA  + E   ++D+V W SM+  Y + GY
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254

Query: 278 FKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
             E + ++  ML   + KPD     +++SAC++  ++ +G +     +H Y L    E  
Sbjct: 255 NLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQ-----IHAYILRAETETS 309

Query: 337 ----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
               + L+ +  ++G ++ A +LI E     H  +S     A  S      K    K A 
Sbjct: 310 GAVGNALISMYAKSGGVEIA-RLIVE-----HNRTSNLNIIAFTSLLDGYTKLGNVKPAR 363

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           +   +L   +V  +  +   Y +  +W++  +L  LM  +G
Sbjct: 364 EIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEG 404


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 214/398 (53%), Gaps = 18/398 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS   +NG    A+  FS M    +  + +   + L AS S+       Q+
Sbjct: 367 RNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQI 422

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V K+ +    FVG+AL+  Y+K     DA  +F  I  K+ V  +A+LS + +A   
Sbjct: 423 HAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDC 482

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQ 227
            G   L   M   G+  + FT+S+++ ACA  SA  + GRQ HA  I+      + + + 
Sbjct: 483 EGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKY--RYHDAICVS 540

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+L+ MY + G +  A  VF       E + ++D+V W SM+  Y ++GY  + I+ +  
Sbjct: 541 SALVSMYSRKGNIDSAQIVF-------ERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQ 593

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M  +G + D V F+ VI  C+H G V  G +YF+ MV D+K+ P  EHY+C+VDL  RAG
Sbjct: 594 MEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAG 653

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           +LD+   LI +M       +   +W  LL AC      ELGK +A K L L+PH+   YV
Sbjct: 654 KLDETMSLIRDM----PFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYV 709

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YA    W E  ++R+LM  + +KK+ GCSWI++
Sbjct: 710 LLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQI 747



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 156/336 (46%), Gaps = 17/336 (5%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N V+ D+ R G  L  L  FS     G+ +D+  L   L A  SV D   G+Q+     K
Sbjct: 68  NRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVK 127

Query: 115 SGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            G     V  G++L+D+Y K   + +   +F+ +P KN V   +LL+G   A++ +  + 
Sbjct: 128 CGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMA 187

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M A G+  + FT +++L A A   A + G++VHA  ++  C   + VF+ +SL+ M
Sbjct: 188 LFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCR--SSVFVCNSLMNM 245

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCGLV  A  VFN    R       D+V W +++     N    E ++L+        
Sbjct: 246 YAKCGLVEDAKSVFNWMETR-------DMVSWNTLMAGLQLNECELEALQLFHESRATMG 298

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPEHYSCLVDLLCRAGELDKA 352
           K  +  + TVI  C++  Q+ L  +    ++ H + L       + L D   + GEL  A
Sbjct: 299 KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNV--MTALADAYSKCGELADA 356

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
             + +       GS +V  W A++S C   G   L 
Sbjct: 357 LNIFSMTT----GSRNVVSWTAIISGCIQNGDIPLA 388



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M   GI+ + +   S L+A  S      G++V A   K G  SSVFV ++L+++YAK
Sbjct: 189 FFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAK 248

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
             L+ DA+ +F+ +  ++ V  N L++G    +     L+L     A        T + +
Sbjct: 249 CGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATV 308

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           ++ CA L      RQ+H+ +++   +L  +V   ++L + Y KCG +  AL +F++    
Sbjct: 309 IKLCANLKQLALARQLHSCVLKHGFHLTGNVM--TALADAYSKCGELADALNIFSMTTG- 365

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
                +++VV WT+++    +NG     + L+  M  +   P+E  +  ++ A
Sbjct: 366 -----SRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 225/435 (51%), Gaps = 56/435 (12%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA----RFGKQ 107
           + +N +IS + R G    A  TF  MH  GI  D Y   S ++A  S  +       G+Q
Sbjct: 249 VAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQ 308

Query: 108 VQAHVTKSGWLSS----VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           V  ++ ++    S    + V +ALI  Y K   + +A  +FD++PV++ +  NA+LSGY 
Sbjct: 309 VHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYV 368

Query: 164 EAK------------------LWA-------------GGLELVRLMPALGLDYDHFTLSA 192
            A+                   W               GL+L   M + GL+   +  + 
Sbjct: 369 NAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAG 428

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS--SLIEMYGKCGLVTKALQVFNLA 250
            + AC+ L + + G+Q+H+ +IR    LG+D  + +  +LI MY +CG+V  A  VF   
Sbjct: 429 AITACSVLGSLDNGQQIHSQVIR----LGHDSGLSAGNALITMYSRCGVVESAESVFLTM 484

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
            +        D V W +M+    ++G+  + I+L+E M+     PD + F+T+++AC+H 
Sbjct: 485 PY-------VDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHA 537

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
           G +K G  YF+ M   Y + PG +HY+ L+DLLCRAG   KA  +I  M       +   
Sbjct: 538 GLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSM----PFEAGAP 593

Query: 371 MWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430
           +W ALL+ C   G  ELG  AA + LEL P   G Y++LSN+YA    WDE+ ++R LM+
Sbjct: 594 IWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMR 653

Query: 431 EKGLKKDVGCSWIEV 445
           E+G+KK+ GCSW+EV
Sbjct: 654 ERGVKKEPGCSWVEV 668



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 183/451 (40%), Gaps = 96/451 (21%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I+ ++ L+  Y++  + K    L N    L  R+ + +N +I+ +        AL  F  
Sbjct: 71  IVARTTLLSAYSSSGNVKLAQQLFNATP-LTIRDTVSYNAMITAYSHGNDGHAALNLFVQ 129

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDA-RFGKQVQAHVTKSGWLSSVFVGSALIDLY---A 132
           M  +G   D +   S L+A + + D  R  + +   V K G L    V +AL+  Y   A
Sbjct: 130 MKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCA 189

Query: 133 KLLLIHDAELM------FDEIP----------------VKNS-----------------V 153
              L+  ++LM      FDE P                V+N                  V
Sbjct: 190 SSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDV 249

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG----LSAAEFGRQV 209
             NA++SGY    L+    +  R M ++G+  D +T ++L+ AC      +     GRQV
Sbjct: 250 AWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQV 309

Query: 210 HAYMIRKCCNLGNDVFM--QSSLIEMYGKCGLVTKALQVFNLAGHR--------LEGEIN 259
           H Y++R      +   +   ++LI  Y K   + +A +VF+    R        L G +N
Sbjct: 310 HGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVN 369

Query: 260 ----------------KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
                           ++V+ WT M+    +NG+ +E +KL+  M   G +P + AF   
Sbjct: 370 AQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGA 429

Query: 304 ISACSHTGQVKLGIEYFEWMV---HDYKLEPGPEHYSCLVDLLCRAGELDKA-------- 352
           I+ACS  G +  G +    ++   HD  L  G    + L+ +  R G ++ A        
Sbjct: 430 ITACSVLGSLDNGQQIHSQVIRLGHDSGLSAG----NALITMYSRCGVVESAESVFLTMP 485

Query: 353 ------WK-LINEMLDRGHGSSSVSMWGALL 376
                 W  +I  +   GHG  ++ ++  ++
Sbjct: 486 YVDSVSWNAMIAALAQHGHGVKAIELFEQMM 516



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 22/272 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN L + V+IS   +NG     LK F+ M   G+    YA   ++TA + +     G+Q+
Sbjct: 386 RNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQI 445

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + V + G  S +  G+ALI +Y++  ++  AE +F  +P  +SV  NA+++   +    
Sbjct: 446 HSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHG 505

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM-IRKCCNLGNDVFMQ 227
              +EL   M    +  D  T   +L AC      + GR     M  R     G D +  
Sbjct: 506 VKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHY-- 563

Query: 228 SSLIEMYGKCGLVTKALQVFN--------------LAGHRLEGEINKDVVLWTSMLG-VY 272
           + LI++  + G+  KA  V                LAG R+ G +   +     +L  + 
Sbjct: 564 ARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIP 623

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           G++G +  +  +Y A+     + DEVA V ++
Sbjct: 624 GQDGTYIILSNMYAAL----GQWDEVARVRLL 651



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 160/409 (39%), Gaps = 88/409 (21%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP--------------- 148
             + V AH+  SG+  + F+ + LI++Y K   I  A  +FD+IP               
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 149 ------------------VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
                             ++++V  NA+++ Y         L L   M   G   D FT 
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142

Query: 191 SALLRACAGLSAAEFGRQ-VHAYMIRKCCNLGNDVFMQSSLIEMYGKCG---------LV 240
           S++L A + ++  E   Q +H  +I+    L   V   ++L+  Y  C          L+
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSV--TNALLSCYVCCASSPLVKSSQLM 200

Query: 241 TKALQVFN---------------LAGHR-----------LEGEINKDVVLWTSMLGVYGR 274
             A +VF+               +AG+            L+G      V W +M+  Y R
Sbjct: 201 ASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVR 260

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP--G 332
            G ++E    +  M   G + DE  + ++ISAC    + K+G+      VH Y L     
Sbjct: 261 RGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNE-KMGMFNCGRQVHGYILRTVVE 319

Query: 333 PEHY------SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           P H+      + L+    +   + +A ++ ++M  R      +  W A+LS   +  + E
Sbjct: 320 PSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVR-----DIISWNAVLSGYVNAQRIE 374

Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
               A     E+   NV  + ++ +  A+    +E  +L   MK +GL+
Sbjct: 375 ---EANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLE 420


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/430 (31%), Positives = 224/430 (52%), Gaps = 24/430 (5%)

Query: 20  QSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++R++L +  C      G + +  +  +    RN + +N +IS     G  + A + F  
Sbjct: 13  RNRVLLMHVKC------GMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLN 66

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M        ++     + AS  ++    G+Q+ A   K G    +FV  ALID+Y+K   
Sbjct: 67  MWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGS 126

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I DA  +F+E+P K +V  N +++GY         L++   M   G+  DHFT S ++R 
Sbjct: 127 IEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRI 186

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA L++ E  +Q HA +IR     G+D+   ++L++ Y K G +  A  VF+        
Sbjct: 187 CARLASVEHAKQAHAALIRH--GFGSDIVANTALVDFYSKWGRIEDARHVFDKMA----- 239

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
             +K+V+ W +++G YG +G   E ++L+E M+     P+ + F+ V+SACSH+G  + G
Sbjct: 240 --SKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERG 297

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG-SSSVSMWGAL 375
            E F+ M  D +++P   HY+C+++L+ R G LD+A  LI     RG     + +MW AL
Sbjct: 298 WEIFQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALI-----RGAPFKPTANMWAAL 352

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L+AC     FELGK AA+K   ++P  +  Y++L N+Y       E   +   +K KGL+
Sbjct: 353 LTACRVNENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLR 412

Query: 436 KDVGCSWIEV 445
               CSWIEV
Sbjct: 413 MRPVCSWIEV 422



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 17/298 (5%)

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           +G+    ++ + ++ ++ K  ++ DA  +FDE+P +N V  N ++SG  +   +     L
Sbjct: 4   NGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRL 63

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              M     D   FT + ++RA AGL     GRQ+HA  ++    +G+D+F+  +LI+MY
Sbjct: 64  FLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLK--MGIGDDIFVSCALIDMY 121

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG +  A  VF       E    K  V W +++  Y  +GY +E + +Y  M  +G K
Sbjct: 122 SKCGSIEDARFVF-------EEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVK 174

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
            D   F  ++  C+    V+   +    ++  +         + LVD   + G ++ A  
Sbjct: 175 MDHFTFSMIVRICARLASVEHAKQAHAALIR-HGFGSDIVANTALVDFYSKWGRIEDARH 233

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGK-FELGKLAAQKALE-LDPHNVGIYVMLS 410
           + ++M      S +V  W AL+    + G+  E  +L  Q   E ++P+++    +LS
Sbjct: 234 VFDKM-----ASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLS 286


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/412 (34%), Positives = 220/412 (53%), Gaps = 20/412 (4%)

Query: 39  LTNCLKFLN---PRNPLPFNVVISDFCRNGSPLY-ALKTFSFMHVHGIFLDTYALCSSLT 94
           L  C K  +    R+ + +N VI     +G+ +  A++ F  M   G   +     + L 
Sbjct: 255 LAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLA 314

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSV 153
             +S+  ++   Q+ A + K        + +AL+  Y K   + + E +F  +   ++ V
Sbjct: 315 TVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEV 374

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N+++SGY   +L    ++LV LM   G   D FT + +L ACA ++  E G +VHA  
Sbjct: 375 SWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACA 434

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           IR C  L +DV + S+L++MY KCG +  A + FNL   R       ++  W SM+  Y 
Sbjct: 435 IRAC--LESDVVIGSALVDMYSKCGRIDYASRFFNLMPVR-------NLYSWNSMISGYA 485

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           R+G+    ++L+  M ++G  PD + FV V+SACSH G V  G EYF+ M   Y L P  
Sbjct: 486 RHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRV 545

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLA 391
           EHYSC+VDLL RAGELDK    IN+M  +     ++ +W  +L AC   +  K ELG+ A
Sbjct: 546 EHYSCMVDLLGRAGELDKIENFINKMPIK----PNILIWRTVLGACCRGNGRKTELGRRA 601

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           A+    +DP N   YV+LSN+YA    W+++ + R  M+E  +KK+ GCSW+
Sbjct: 602 AEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWV 653



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 23/278 (8%)

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
           +V K G+ S +F+ + LI++Y ++     A  +FDE+P +N V    L+SGY +  +   
Sbjct: 25  NVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPED 84

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACA-GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
              +++ M   G   + F   + +RAC   +     GRQVH Y IR   N    V + + 
Sbjct: 85  ACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAK-VAVGNG 143

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           LI MY KCG +  A  VF L        ++KD V W SM+    +N  F++ +K Y +M 
Sbjct: 144 LINMYAKCGDIDHARSVFGLM-------VDKDSVSWNSMITGLDQNKCFEDAVKSYNSMR 196

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCR 345
             G  P   A ++ +S+C+  G + LG +      H   ++ G +      + L+ L   
Sbjct: 197 KTGLMPSNFALISALSSCASLGCILLGQQ-----THGEGIKLGLDMDVSVSNTLLALYAE 251

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
              L +  K+ + ML+R   S     W  ++ A  D G
Sbjct: 252 TSRLAECQKVFSWMLERDQVS-----WNTVIGALADSG 284



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 173/387 (44%), Gaps = 16/387 (4%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFS 75
           F S L L  T       +G   +  K  +    RN + +  +IS + +NG P  A     
Sbjct: 31  FDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLK 90

Query: 76  FMHVHGIFLDTYALCSSLTA-STSVKDARFGKQVQAHVTKSGWLSS-VFVGSALIDLYAK 133
            M   G   + +A  S++ A   S+   R G+QV  +  ++G   + V VG+ LI++YAK
Sbjct: 91  EMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAK 150

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              I  A  +F  +  K+SV  N++++G  + K +   ++    M   GL   +F L + 
Sbjct: 151 CGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISA 210

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L +CA L     G+Q H   I+    L  DV + ++L+ +Y +   + +  +VF+     
Sbjct: 211 LSSCASLGCILLGQQTHGEGIK--LGLDMDVSVSNTLLALYAETSRLAECQKVFSWM--- 265

Query: 254 LEGEINKDVVLWTSMLGVYGRNG-YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
               + +D V W +++G    +G    E I+++  M+  G  P+ V F+ +++  S    
Sbjct: 266 ----LERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLST 321

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
            KL  +    ++  Y ++      + L+    ++GE++   ++ + M +R    S  SM 
Sbjct: 322 SKLSHQ-IHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMI 380

Query: 373 GALLSACHDCGKFELGKLAAQKALELD 399
              +     C   +L  L  Q+   LD
Sbjct: 381 SGYIHNELLCKAMDLVWLMMQRGQRLD 407


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 219/394 (55%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           ++ +IS + ++     A + F  M    +  + ++L   L A  +V     G+Q+   V 
Sbjct: 320 WSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVI 379

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+ S +FVG+AL+D+YAK   + ++  +F  +   N V  N ++ GYC++      L 
Sbjct: 380 KLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALS 439

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           + + M A  +     T S++LRACA  ++ +   Q+H+ + +   N  ND  + +SLI+ 
Sbjct: 440 VFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFN--NDTIVCNSLIDT 497

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  AL+VF       E  I  DVV W +++  Y  +G   + ++L+  M  + T
Sbjct: 498 YAKCGCIRDALKVF-------ESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDT 550

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           KP++V FV ++S C  TG V  G+  F  M  D++++P  +HY+C+V LL RAG L+ A 
Sbjct: 551 KPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDAL 610

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           K I ++      + S  +W ALLS+C       LGK +A+K LE++P +   YV+LSN+Y
Sbjct: 611 KFIGDI----PSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMY 666

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A   + D++  LR+ M+  G+KK+VG SW+E+ G
Sbjct: 667 AAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKG 700



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 175/366 (47%), Gaps = 21/366 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  ++S +  N  P  AL TFS M + G   + + L S L A+  +  A  GK +
Sbjct: 214 KDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGI 273

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K+   +   VG AL+D+YAK   I DA  +F+ IP  + +  + L+S Y ++   
Sbjct: 274 HGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQN 333

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFM 226
               E+   M    +  + F+LS +L+ACA ++  + G+Q+H  +I+    LG  +++F+
Sbjct: 334 EQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIK----LGYESELFV 389

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L+++Y KC  +  +L++F     R   + N+  V W +++  Y ++G+ ++ + +++
Sbjct: 390 GNALMDVYAKCRNMENSLEIF-----RSLRDANE--VSWNTIIVGYCQSGFAEDALSVFQ 442

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M        +V F +V+ AC++T  +K  ++    ++            + L+D   + 
Sbjct: 443 EMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHS-LIEKSTFNNDTIVCNSLIDTYAKC 501

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVG 404
           G +  A K+   ++        V  W A++S  A H      L         +  P++V 
Sbjct: 502 GCIRDALKVFESII-----QCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVT 556

Query: 405 IYVMLS 410
              +LS
Sbjct: 557 FVALLS 562



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 15/227 (6%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV--FVGSALIDLYAKLLLIHDAE 141
           LD+YA    L    +  DAR G+ V A V + G ++ +  F  + L++LYAKL  +  A 
Sbjct: 45  LDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAAR 104

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            +FD +P +N V    L+ GY     +     L R +   G + +HF L+ +L+    + 
Sbjct: 105 RLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMD 164

Query: 202 AAEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           A      +HA      C LG+D   F+ SSLI+ Y  CG V+ A  VF       +G I 
Sbjct: 165 APGLTCCIHAC----ACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVF-------DGIIW 213

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           KD V WT+M+  Y  N   ++ +  +  M M G KP+     +V+ A
Sbjct: 214 KDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKA 260



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 146/317 (46%), Gaps = 18/317 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + F  ++  +   G    A   F  +   G  ++ + L + L    ++        +
Sbjct: 113 RNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCI 172

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K G   + FVGS+LID Y+    +  A  +FD I  K++V   A++S Y E  + 
Sbjct: 173 HACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIP 232

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L     M   G   + F L+++L+A   LS+A  G+ +H   ++  C+   +  +  
Sbjct: 233 EDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCD--TEPHVGG 290

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  A  VF +  H        DV+LW+ ++  Y ++   ++  +++  M
Sbjct: 291 ALLDMYAKCGYIEDARTVFEIIPH-------DDVILWSFLISRYAQSYQNEQAFEMFLRM 343

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
           + +   P+E +   V+ AC++   + LG +     +H+  ++ G E      + L+D+  
Sbjct: 344 MRSSVVPNEFSLSGVLQACANVAFLDLGQQ-----IHNLVIKLGYESELFVGNALMDVYA 398

Query: 345 RAGELDKAWKLINEMLD 361
           +   ++ + ++   + D
Sbjct: 399 KCRNMENSLEIFRSLRD 415



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 135/344 (39%), Gaps = 53/344 (15%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           LM  Y  CR+ +N   +    + L   N + +N +I  +C++G    AL  F  M    +
Sbjct: 393 LMDVYAKCRNMENSLEI---FRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHV 449

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
                   S L A  +    +   Q+ + + KS + +   V ++LID YAK   I DA  
Sbjct: 450 LSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALK 509

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F+ I   + V  NA++SGY         LEL   M       +  T  ALL  C     
Sbjct: 510 VFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVC----- 564

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN--LAGHRLEGEINK 260
                                           G  GLV + L +FN     HR++  ++ 
Sbjct: 565 --------------------------------GSTGLVNQGLSLFNSMTMDHRIKPSMDH 592

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
               +T ++ + GR G   + +K    +    + P  + +  ++S+C     V LG    
Sbjct: 593 ----YTCIVRLLGRAGRLNDALKFIGDI---PSTPSPMVWRALLSSCVVHKNVALGKFSA 645

Query: 321 EWMVHDYKLEPGPE-HYSCLVDLLCRAGELDKAWKLINEMLDRG 363
           E ++   ++EP  E  Y  L ++   AG LD+   L   M + G
Sbjct: 646 EKVL---EIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIG 686


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/432 (31%), Positives = 223/432 (51%), Gaps = 48/432 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  + S + + G P   +  F  M   G+  +   + S L A   +KD + GK++
Sbjct: 228 RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEI 287

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                + G + ++FV SAL+ LYAK L + +A ++FD +P ++ V  N +L+ Y + K +
Sbjct: 288 HGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEY 347

Query: 169 AGG-----------------------------------LELVRLMPALGLDYDHFTLSAL 193
             G                                   +E+ R M  +G   +  T+S++
Sbjct: 348 EKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSI 407

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L AC+       G+++H Y+ R    +G D+   ++L+ MY KCG +  +  VF++    
Sbjct: 408 LPACSFSENLRMGKEIHCYVFRHW-KVG-DLTSTTALLYMYAKCGDLNLSRNVFDMMRR- 464

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                 KDVV W +M+     +G  KE + L++ ML++  +P+ V F  V+S CSH+  V
Sbjct: 465 ------KDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLV 518

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G++ F  M  D+ +EP   HYSC+VD+  RAG L++A+K I  M        + S WG
Sbjct: 519 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGM----PMEPTASAWG 574

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL+AC      EL K++A+K  E++P+N G YV L N+     MW E  Q+R LMKE+G
Sbjct: 575 ALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERG 634

Query: 434 LKKDVGCSWIEV 445
           + K  GCSW++V
Sbjct: 635 ITKTPGCSWLQV 646



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 137/274 (50%), Gaps = 9/274 (3%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           +P   + +IS    +G    A+K +S +   GI  D     ++  A     DA   K+V 
Sbjct: 128 DPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVH 187

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
              T+ G +S VFVG+ALI  Y K   +  A  +FD++ V++ V   +L S Y +     
Sbjct: 188 DDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPR 247

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
            G+++ R M   G+  +  T+S++L ACA L   + G+++H + +R    +  ++F+ S+
Sbjct: 248 KGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRH--GMVVNLFVCSA 305

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L+ +Y KC  V +A  VF+L  HR       DVV W  +L  Y +N  +++   L+  M 
Sbjct: 306 LVSLYAKCLSVREARMVFDLMPHR-------DVVSWNGVLTAYFKNKEYEKGFSLFLKMS 358

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            +G + DE  +  VI  C   G+ +  +E F  M
Sbjct: 359 RDGVRADEATWNAVIGGCMENGRSEEAVEMFRKM 392



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 23/270 (8%)

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           +G  LI +   +   + A  +FD IP  +    + L+S      L    +++   +   G
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D     A  +ACA    A   ++VH    R  C + +DVF+ ++LI  YGKC  V  
Sbjct: 160 IKPDMPVFLAAAKACAVSGDALRVKEVHDDATR--CGVMSDVFVGNALIHAYGKCKCVEG 217

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A +VF       +  + +DVV WTS+   Y + G+ ++ + ++  M  +G KP+ +   +
Sbjct: 218 ARRVF-------DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSS 270

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINE 358
           ++ AC+    +K G E     +H + +  G        S LV L  +   + +A  + + 
Sbjct: 271 ILPACAELKDLKSGKE-----IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDL 325

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           M  R      V  W  +L+A     ++E G
Sbjct: 326 MPHR-----DVVSWNGVLTAYFKNKEYEKG 350


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/427 (33%), Positives = 234/427 (54%), Gaps = 20/427 (4%)

Query: 20  QSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV 79
           ++ LM+ Y+ C    +   L     FL   N + +  +IS F +N     A+  FS M  
Sbjct: 337 RTALMVAYSKCMAMLDALRLFKETGFLG--NVVSWTAMISGFLQNDGKEEAVGLFSEMKR 394

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
            G+  + +     LTA   +  +    +V A V K+ +  S  VG+AL+D Y KL  + +
Sbjct: 395 KGVRPNEFTYSVILTALPVISPS----EVHAQVVKTNYERSSTVGTALLDAYVKLGKVDE 450

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +F  I  K+ V  +A+L+GY +A      +++   +   G+  + FT S++L  CA 
Sbjct: 451 AAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAA 510

Query: 200 LSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            +A+   G+Q H + I+    L + + + S+L+ MY K G +  A +VF       + + 
Sbjct: 511 TTASMGQGKQFHGFAIK--SRLDSSLCVSSALLTMYAKKGHIESAEEVF-------KRQR 561

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            KD+V W SM+  Y ++G   + + +++ M     K D V F+ V +AC+H G V+ G +
Sbjct: 562 EKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEK 621

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           YF+ MV D K+ P  EH SC+VDL  RAG+L+KA K+I+ M +   GS   ++W  +L+A
Sbjct: 622 YFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLA-GS---TIWRTILAA 677

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           C    K ELG+LAA+K + + P +   YV+LSN+YA+   W E  ++R+LM E+ +KK+ 
Sbjct: 678 CRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEP 737

Query: 439 GCSWIEV 445
           G SWIEV
Sbjct: 738 GYSWIEV 744



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 9/267 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +  ++  F R+G    A + F  +   G+ +D     S L  S ++ D  FG+Q+
Sbjct: 60  RDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQL 119

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G+L  V VG++L+D Y K     D   +FDE+  +N V    L+SGY    L 
Sbjct: 120 HCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLN 179

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M   G   + FT +A L   A       G QVH  +++    L   + + +
Sbjct: 180 EEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN--GLDKTIPVSN 237

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI +Y KCG V KA  +F+      + E+ K VV W SM+  Y  NG   E + ++ +M
Sbjct: 238 SLINLYLKCGNVRKARILFD------KTEV-KSVVTWNSMISGYAANGLDLEALGMFYSM 290

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKL 315
            +N  +  E +F ++I  C++  +++ 
Sbjct: 291 RLNHVRLSESSFASIIKLCANLKELRF 317



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 157/351 (44%), Gaps = 28/351 (7%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N    +  RN + +  +IS + RN      L  F  M   G   +++   ++L       
Sbjct: 153 NVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEG 212

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
               G QV   V K+G   ++ V ++LI+LY K   +  A ++FD+  VK+ V  N+++S
Sbjct: 213 VGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMIS 272

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLS-----ALLRACAGLSAAEFGRQVHAYMIR 215
           GY      A GL+L  L     +  +H  LS     ++++ CA L    F  Q+H  +++
Sbjct: 273 GYA-----ANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVK 327

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
                  ++  +++L+  Y KC  +  AL++F   G         +VV WT+M+  + +N
Sbjct: 328 YGFVFDQNI--RTALMVAYSKCMAMLDALRLFKETG------FLGNVVSWTAMISGFLQN 379

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
              +E + L+  M   G +P+E  +  +++A       ++  +     V     E     
Sbjct: 380 DGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQ-----VVKTNYERSSTV 434

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            + L+D   + G++D+A K+ +     G  +  +  W A+L+     G+ E
Sbjct: 435 GTALLDAYVKLGKVDEAAKVFS-----GIDNKDIVAWSAMLAGYAQAGETE 480



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 19/240 (7%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD+ P ++     +LL G+           L   +  LG++ D    S++L+  A 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 200 LSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           L    FGRQ+H     +C   G  +DV + +SL++ Y K         VF+    R    
Sbjct: 110 LCDELFGRQLHC----QCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKER---- 161

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              +VV WT+++  Y RN   +EV+ L+  M   GT+P+   F   +   +  G    G+
Sbjct: 162 ---NVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGL 218

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           +    +V +   +  P   S L++L  + G + KA  L ++   +     SV  W +++S
Sbjct: 219 QVHTVVVKNGLDKTIPVSNS-LINLYLKCGNVRKARILFDKTEVK-----SVVTWNSMIS 272


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 228/438 (52%), Gaps = 39/438 (8%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
            KK L    +    +  R+ + +N++I+ + +NG    A + F  + +  +F  T A+ S
Sbjct: 227 RKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWT-AMVS 285

Query: 92  SLTASTSVKDARF-------GKQVQAHVTKSGWLSSVFVGSA-----------------L 127
               +  + +A           +V  +   +G++ S  +  A                 +
Sbjct: 286 GFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTM 345

Query: 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
           +  YA+   I  A+++FDE+P ++ +   A++SGY ++      L L   M   G   + 
Sbjct: 346 VTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNR 405

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
             L+  L +CA ++A E G+Q+H  +++     G      ++L+ MYGKCG + +A  VF
Sbjct: 406 SALACALSSCAEIAALELGKQLHGRLVKAGFQTG--YIAGNALLAMYGKCGSIEEAFDVF 463

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
                  E    KD+V W +M+  Y R+G+ KE + L+E+M M   KPD+V  V V+SAC
Sbjct: 464 -------EDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSAC 515

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           SHTG V  G+EYF  M  +Y +    +HY+C++DLL RAG LD+A  L+  M        
Sbjct: 516 SHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSM----PFYP 571

Query: 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRE 427
             + WGALL A    G  ELG+ AA+K  E++P N G+YV+LSNLYA    W E+ ++R 
Sbjct: 572 DAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRS 631

Query: 428 LMKEKGLKKDVGCSWIEV 445
            M++KG+KK  G SW+E+
Sbjct: 632 KMRDKGVKKVPGYSWVEI 649



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/399 (18%), Positives = 166/399 (41%), Gaps = 45/399 (11%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           NL         +  ++ + +N ++S F +NG    A K F  M V    +    L S+  
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNE-ISWNGLLSAYV 195

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
            +  ++DAR     +   +K  W   +   + L+  Y +   + DA  +FD +PV++ + 
Sbjct: 196 QNGRIEDAR-----RLFDSKMDW--EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKIS 248

Query: 155 ANALLSGYCEAKLWAGGLELVRLMP-----ALGLDYDHFTLSALLRACAGL-------SA 202
            N +++GY +  L +    L   +P     A       F  + +L     +       + 
Sbjct: 249 WNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNE 308

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQ---------SSLIEMYGKCGLVTKALQVFNLAGHR 253
             +   +  Y+  +      ++F Q         ++++  Y +CG + +A  +F+    R
Sbjct: 309 VSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQR 368

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  D + W +M+  Y ++G  +E + L+  M  +G   +  A    +S+C+    +
Sbjct: 369 -------DCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAAL 421

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           +LG +    +V     + G    + L+ +  + G +++A+ +  ++ ++      +  W 
Sbjct: 422 ELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEK-----DIVSWN 475

Query: 374 ALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            +++  A H  GK  L    + K + + P +V +  +LS
Sbjct: 476 TMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLS 513



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 140/342 (40%), Gaps = 61/342 (17%)

Query: 86  TYALCSSLTASTSVKD--ARFGKQVQAHVTKSGWLS--SVFVG---------SALIDLYA 132
           T  L S  + ST V     ++ +++ A++ K    S  SVF G         +A+I  Y 
Sbjct: 43  TQKLESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYL 102

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
                  A  +F+++P ++ +  N +LSGY +    +    L   MP    + D  + +A
Sbjct: 103 SNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNA 158

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN---- 248
           +L   A     E  R++   M+ K     N++   + L+  Y + G +  A ++F+    
Sbjct: 159 MLSGFAQNGFVEEARKIFDQMLVK-----NEISW-NGLLSAYVQNGRIEDARRLFDSKMD 212

Query: 249 ---------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
                    + G+  +  ++           +D + W  M+  Y +NG   E  +L+E +
Sbjct: 213 WEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL 272

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            +     D  A+  ++S     G +      FE M      E     ++ ++    ++ +
Sbjct: 273 PIR----DVFAWTAMVSGFVQNGMLDEATRIFEEMP-----EKNEVSWNAMIAGYVQSQQ 323

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
           ++KA +L ++M  R     + S W  +++    CG  +  K+
Sbjct: 324 IEKARELFDQMPSR-----NTSSWNTMVTGYAQCGNIDQAKI 360



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 28/212 (13%)

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D+   + ++  Y K G ++ A  +FN           KDVV W +ML  + +NG+ +E  
Sbjct: 121 DLISWNVMLSGYVKNGNLSAARALFNQMPE-------KDVVSWNAMLSGFAQNGFVEEAR 173

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           K+++ ML+     +E+++  ++SA    G+++     F     D K++     ++CL+  
Sbjct: 174 KIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLF-----DSKMDWEIVSWNCLMGG 224

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL--ELDP 400
             R   LD A  L + M  R   S     W  +++     G  + G L+  + L  EL  
Sbjct: 225 YVRKKRLDDARSLFDRMPVRDKIS-----WNIMIT-----GYAQNGLLSEARRLFEELPI 274

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
            +V  +  + + + +  M DE  ++ E M EK
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK 306


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 226/409 (55%), Gaps = 14/409 (3%)

Query: 40  TNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
            N    +  ++ + ++ +I+ +  N +   AL  F  M       ++  + S+L A    
Sbjct: 261 ANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVS 320

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           ++   GK++       G+     V +ALID+Y K     +A  +F  +P K+ V   ALL
Sbjct: 321 RNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALL 380

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           SGY +  +    + + R M + G+  D   +  +L A + L   +    +H Y++R   N
Sbjct: 381 SGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFN 440

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
             ++VF+ +SLIE+Y KCG +  A+++F       +G I +DVV+W+SM+  YG +G   
Sbjct: 441 --SNVFVGASLIELYSKCGSLGDAVKLF-------KGMIVRDVVIWSSMIAAYGIHGRGG 491

Query: 280 EVIKLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           E +++++ M+ N T +P+ V F++++SACSH G V+ G++ F+ MVHDY+L P  EH+  
Sbjct: 492 EALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGI 551

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +VDLL R G+L KA  +IN M       +   +WGALL AC      E+G+ AA+    L
Sbjct: 552 MVDLLGRIGQLGKAMDIINRM----PIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWL 607

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           DP + G Y++LSN+YA    WD + +LR  +KE+GLKK  G S +EV G
Sbjct: 608 DPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRG 656



 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 218/402 (54%), Gaps = 15/402 (3%)

Query: 45   FLNPRNPLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            F +  NP  F  NV+I  F  +G  L +L+ +S M   G+  D +A   +L +   + D 
Sbjct: 775  FEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDL 834

Query: 103  RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
            + GK +  H+   G  + +FV +AL+D+YAK   I  A L+FD++ V++ V   +++SGY
Sbjct: 835  QRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGY 894

Query: 163  CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                  +  L    LM + G+  +  ++ ++L AC  L A   G   H+Y+I+       
Sbjct: 895  AHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEF-- 952

Query: 223  DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            D+ + +++++MY KCG +  A  +F+           KD+V W++M+  YG +G+ ++ I
Sbjct: 953  DILVATAIMDMYSKCGSLDLARCLFDETA-------GKDLVCWSAMIASYGIHGHGRKAI 1005

Query: 283  KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
             L++ M+  G +P  V F  V+SACSH+G ++ G  YF+ M  ++ +     +Y+C+VDL
Sbjct: 1006 DLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDL 1065

Query: 343  LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
            L RAG+L +A  LI  M          S+WG+LL AC      +L +  A     LDP +
Sbjct: 1066 LGRAGQLSEAVDLIENM----PVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVH 1121

Query: 403  VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
             G +V+LSN+YA    W+E+ ++R++M  +G  K  G S +E
Sbjct: 1122 AGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVE 1163



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 179/403 (44%), Gaps = 62/403 (15%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M    + +D +  C+         + R   Q+ + V K+G L   F  + L  LYAK   
Sbjct: 1   MRSRQVLVDLFQACN---------NGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCAS 51

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP-ALGLDYDHFTLSALLR 195
           +  A  +FDE P  N    N+ L  YC  K W   L L  LM    G   D+FT+   L+
Sbjct: 52  LQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALK 111

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           ACAGL   E G+ +H +  +K   +G+D+F+ S+L+E+Y KCG + +AL+VF       E
Sbjct: 112 ACAGLRMLELGKVIHGFA-KKNDEIGSDMFVGSALVELYSKCGQMGEALKVF-------E 163

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM-LMNGTKPDEVAFVTVISACSHTGQVK 314
                D VLWTSM+  Y +N   +E + L+  M +M+    D V  V+V+SAC+    VK
Sbjct: 164 EFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVK 223

Query: 315 LG---------------IEYFEWMVHDYK-----------LEPGPEH----YSCLVDLLC 344
            G               +     +++ Y                PE     +S ++    
Sbjct: 224 AGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYA 283

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG----KLAAQKALELDP 400
                ++A  L +EM+++    +SV++  A L AC      E G    K+A  K  ELD 
Sbjct: 284 NNEAANEALNLFHEMIEKRFEPNSVTVVSA-LQACAVSRNLEEGKKIHKIAVWKGFELD- 341

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
               +   L ++Y K    DE   L + +     KKDV  SW+
Sbjct: 342 --FSVSTALIDMYMKCSCPDEAVDLFQRLP----KKDV-VSWV 377



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 152/333 (45%), Gaps = 55/333 (16%)

Query: 130  LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
            +Y     I  A ++F++IP   S   N ++ G+     +   LEL   M   GL  D F 
Sbjct: 761  MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFA 820

Query: 190  LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
                L++CAGLS  + G+ +H +++  CC   ND+F+ ++L++MY KCG +  A  VF+ 
Sbjct: 821  FPFALKSCAGLSDLQRGKVIHQHLV--CCGCSNDLFVDAALVDMYAKCGDIEAARLVFDK 878

Query: 250  AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
               R       D+V WTSM+  Y  NGY  E +  ++ M  +G  P+ V+ ++V+ AC +
Sbjct: 879  MAVR-------DLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGN 931

Query: 310  TGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDR--- 362
             G ++ G    EW  H Y ++ G E      + ++D+  + G LD A  L +E   +   
Sbjct: 932  LGALRKG----EWF-HSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLV 986

Query: 363  ------------GHGSSSVSMWGAL---------------LSACHDCGKFELGKLAAQKA 395
                        GHG  ++ ++  +               LSAC   G  E GK+  Q  
Sbjct: 987  CWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLM 1046

Query: 396  LELDPHNVGIYVMLSNLYAKFCMWDEIGQLREL 428
             E        +V+   L    CM D +G+  +L
Sbjct: 1047 TEE-------FVIARKLSNYACMVDLLGRAGQL 1072



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 162/340 (47%), Gaps = 25/340 (7%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALCSSLTASTSVKDA 102
           +F  P   L +  +++ + +N  P  AL  FS M  +  + LD   L S ++A   + + 
Sbjct: 164 EFQRPDTVL-WTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNV 222

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           + G  V   V +  +   + + ++L++LYAK      A  +F ++P K+ +  + +++ Y
Sbjct: 223 KAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACY 282

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
              +     L L   M     + +  T+ + L+ACA     E G+++H   + K   L  
Sbjct: 283 ANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFEL-- 340

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D  + ++LI+MY KC    +A+ +F     RL     KDVV W ++L  Y +NG   + +
Sbjct: 341 DFSVSTALIDMYMKCSCPDEAVDLF----QRLP---KKDVVSWVALLSGYAQNGMAYKSM 393

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
            ++  ML +G +PD VA V +++A S     +LGI      +H Y +  G        + 
Sbjct: 394 GVFRNMLSDGIQPDAVAVVKILAASS-----ELGIFQQALCLHGYVVRSGFNSNVFVGAS 448

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           L++L  + G L  A KL   M+ R      V +W ++++A
Sbjct: 449 LIELYSKCGSLGDAVKLFKGMIVR-----DVVIWSSMIAA 483


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/400 (31%), Positives = 218/400 (54%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ +  + +N ++  + +NG P  A+  F  M   GI      +  +L A   + D   G
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V   V +    S + V ++LI +Y+K   +  A  +F+ +  +  V  NA++ GY + 
Sbjct: 369 KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQN 428

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              +  L     M +LG+  D FT+ +++ A A LS     + +H  +IR C  L  ++F
Sbjct: 429 GRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC--LDKNIF 486

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L++MY KCG +  A ++F++   R        V+ W +M+  YG +G  +  + L+
Sbjct: 487 VTTALVDMYSKCGAIHMARKLFDMISDR-------HVITWNAMIDGYGTHGLGRAALDLF 539

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + M     +P+++ +++VISACSH+G V  G+ +F+ M  DY LEP  +HY  +VDLL R
Sbjct: 540 DKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGR 599

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG + +AW  I  M      S  ++++GA   AC      E+G+ AA+K  EL+P   G 
Sbjct: 600 AGRIKEAWDFIENM----PISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGY 655

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +V+L+N+YA    W ++ ++R+ M++KGLKK  GCS +E+
Sbjct: 656 HVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVEL 695



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 172/386 (44%), Gaps = 20/386 (5%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  CR    +         +  R+ + +N +I+ F +NG    AL+    M   G   D+
Sbjct: 192 YAKCRQ---IDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDS 248

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
             L + L A+  V     GK +  +  ++G+   V + +AL D+Y+K   +  A L+FD 
Sbjct: 249 ITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDG 308

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +  K  V  N+++ GY +       + +   M   G+D    T+   L ACA L   E G
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           + VH ++ +   NLG+D+ + +SLI MY KC  V  A  +FN     L G  +   V W 
Sbjct: 369 KFVHKFVDQ--LNLGSDISVMNSLISMYSKCKRVDIASDIFN----NLNGRTH---VSWN 419

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +M+  Y +NG   E +  +  M   G KPD    V+VI A +    V    ++   ++  
Sbjct: 420 AMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAEL-SVTRHAKWIHGLIIR 478

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGK 384
             L+      + LVD+  + G +  A KL + + DR      V  W A++     H  G+
Sbjct: 479 SCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDR-----HVITWNAMIDGYGTHGLGR 533

Query: 385 FELGKLAAQKALELDPHNVGIYVMLS 410
             L      K   ++P+++    ++S
Sbjct: 534 AALDLFDKMKKGAVEPNDITYLSVIS 559



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 153/349 (43%), Gaps = 17/349 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           ++ ++  + +N S   AL     M    +    Y     L       D + GK++   + 
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            + + ++VF  + ++++YAK   I DA  MFD +P ++ V  N +++G+ +       LE
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE 234

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           LV  M   G   D  TL  +L A A +     G+ +H Y IR        V + ++L +M
Sbjct: 235 LVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIR--AGFAKLVNISTALADM 292

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V  A  +F       +G   K VV W SM+  Y +NG  ++ I ++E ML  G 
Sbjct: 293 YSKCGSVETARLIF-------DGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            P  V  +  + AC+  G ++ G ++    V    L       + L+ +  +   +D A 
Sbjct: 346 DPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIAS 404

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDP 400
            + N +  R H S     W A++      G+    L   +  K+L + P
Sbjct: 405 DIFNNLNGRTHVS-----WNAMILGYAQNGRVSEALNCFSEMKSLGMKP 448



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 5   HQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRN 64
           H+F   L L   I   + L+  Y+ C   K +   ++    LN R  + +N +I  + +N
Sbjct: 372 HKFVDQLNLGSDISVMNSLISMYSKC---KRVDIASDIFNNLNGRTHVSWNAMILGYAQN 428

Query: 65  GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG 124
           G    AL  FS M   G+  D++ + S + A   +   R  K +   + +S    ++FV 
Sbjct: 429 GRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVT 488

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           +AL+D+Y+K   IH A  +FD I  ++ +  NA++ GY    L    L+L   M    ++
Sbjct: 489 TALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVE 548

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
            +  T  +++ AC+     + G + H   +++   L   +    +++++ G+ G + +A
Sbjct: 549 PNDITYLSVISACSHSGLVDEGLR-HFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEA 606


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 235/429 (54%), Gaps = 25/429 (5%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPR-NPLPFNVVISDFCRNGSPLYALKTFSFMHV 79
           ++L+  Y+ C   +N   L + +    P+ N   +NV+I  +  NG    A+  +  M  
Sbjct: 97  TKLVNFYSVCNSLRNAHHLFDKI----PKGNLFLWNVLIRAYAWNGPHETAISLYHQMLE 152

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
           +G+  D + L   L A +++     G+ +   V +SGW   VFVG+AL+D+YAK   + D
Sbjct: 153 YGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVD 212

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD+I  +++V  N++L+ Y +       L L   M A G+     TL  ++ + A 
Sbjct: 213 ARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSAD 272

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           ++    GR++H +  R      + V  +++LI+MY KCG V  A  +F     RL     
Sbjct: 273 IACLPHGREIHGFGWRHGFQYNDKV--KTALIDMYAKCGSVKVACVLFE----RLR---E 323

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           K VV W +++  Y  +G   E + L+E M M   +PD + FV  ++ACS    +  G   
Sbjct: 324 KRVVSWNAIITGYAMHGLAVEALDLFERM-MKEAQPDHITFVGALAACSRGRLLDEGRAL 382

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM---LDRGHGSSSVSMWGALL 376
           +  MV D ++ P  EHY+C+VDLL   G+LD+A+ LI +M    D G       +WGALL
Sbjct: 383 YNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSG-------VWGALL 435

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           ++C   G  EL ++A +K +EL+P + G YV+L+N+YA+   W+ + +LR+LM +KG+KK
Sbjct: 436 NSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKK 495

Query: 437 DVGCSWIEV 445
           ++ CSWIEV
Sbjct: 496 NIACSWIEV 504



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 161/356 (45%), Gaps = 25/356 (7%)

Query: 25  LPYTTCRHKKNLGTLTNCLKF-LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF 83
           + +++ R  +    + + L F LN     P+  +   F     P + + +F         
Sbjct: 1   MSFSSIRKTQETSRILSILSFSLNLFPVSPYYFLHQSFATQLIPQHKVDSFPSSPS---- 56

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
            + Y   S L +  S K    GKQ+ A + + G   ++ + + L++ Y+    + +A  +
Sbjct: 57  -NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHL 115

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           FD+IP  N    N L+  Y         + L   M   GL  D+FTL  +L+AC+ LS  
Sbjct: 116 FDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTI 175

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
             GR +H  +IR       DVF+ ++L++MY KCG V  A  VF+         +++D V
Sbjct: 176 GEGRVIHERVIRS--GWERDVFVGAALVDMYAKCGCVVDARHVFDKI-------VDRDAV 226

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY--FE 321
           LW SML  Y +NG+  E + L   M   G +P E   VTVIS+ +    +  G E   F 
Sbjct: 227 LWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFG 286

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           W  H ++     +  + L+D+  + G +  A  L   + ++      V  W A+++
Sbjct: 287 WR-HGFQYNDKVK--TALIDMYAKCGSVKVACVLFERLREK-----RVVSWNAIIT 334



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 29/200 (14%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKA 243
           +H+  ++LL +C    A E G+Q+HA    + C LG   ++ + + L+  Y  C  +  A
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHA----RLCQLGIAYNLDLATKLVNFYSVCNSLRNA 112

Query: 244 LQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
                   H L  +I K ++ LW  ++  Y  NG  +  I LY  ML  G KPD      
Sbjct: 113 --------HHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPF 164

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINE 358
           V+ ACS    +  G      ++H+  +  G E      + LVD+  + G +  A  + ++
Sbjct: 165 VLKACSALSTIGEG-----RVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDK 219

Query: 359 MLDRGHGSSSVSMWGALLSA 378
           ++DR        +W ++L+A
Sbjct: 220 IVDR-----DAVLWNSMLAA 234


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/400 (32%), Positives = 216/400 (54%), Gaps = 18/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           R+   +  +IS + R+  P  AL+ F  M        + + + S+L A+ +V   R GK+
Sbjct: 165 RDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKE 224

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +  ++ ++G  S   V SAL D+Y K   I +A  +FD++  ++ V   A++  Y +   
Sbjct: 225 IHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGR 284

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND--VF 225
              G +L   +   G+  + FT S +L ACA  ++ E G++VH YM R    +G D   F
Sbjct: 285 RKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTR----VGFDPFSF 340

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
             S+L+ MY KCG +  A +VF             D+  WTS++  Y +NG   E I+ +
Sbjct: 341 AASALVHMYSKCGNMVSAERVFKETPQ-------PDLFSWTSLIAGYAQNGQPDEAIRYF 393

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E ++ +GT+PD + FV V+SAC+H G V  G++YF  +   Y L    +HY+C++DLL R
Sbjct: 394 ELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLAR 453

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           +G+ D+A  +I++M  +        +W +LL  C   G  +L + AA+   E++P N   
Sbjct: 454 SGQFDEAENIISKMSMK----PDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPAT 509

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           YV L+N+YA   MW E+ ++R+ M ++G+ K  G SWI +
Sbjct: 510 YVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAI 549



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 179/398 (44%), Gaps = 80/398 (20%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK+V  H+  SG++  +F+ + L+++YAK   + D++ +FDE+P ++    N L+SGY +
Sbjct: 89  GKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAK 148

Query: 165 AKL------------------WAG-------------GLELVRLMP-ALGLDYDHFTLSA 192
             L                  W                LEL R+M  +     + FT+S+
Sbjct: 149 MGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSS 208

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
            L A A +     G+++H Y++R    L +D  + S+L +MYGKCG + +A  +F+    
Sbjct: 209 ALAAAAAVPCLRIGKEIHGYIMR--TGLDSDEVVWSALSDMYGKCGSIEEARHIFDKM-- 264

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS---- 308
                +++D+V WT+M+  Y ++G  KE   L+  +L +G +P+E  F  V++AC+    
Sbjct: 265 -----VDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTS 319

Query: 309 -------HTGQVKLGIEYFEW----MVHDY-------------KLEPGPEHYS--CLVDL 342
                  H    ++G + F +    +VH Y             K  P P+ +S   L+  
Sbjct: 320 EELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAG 379

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG-----KLAAQKALE 397
             + G+ D+A +    ++  G     ++  G +LSAC   G  + G      +  Q  L 
Sbjct: 380 YAQNGQPDEAIRYFELLVKSGTQPDHITFVG-VLSACAHAGLVDKGLDYFHSIKEQYGLT 438

Query: 398 LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
              H    Y  + +L A+   +DE   +   M  K  K
Sbjct: 439 ---HTADHYACIIDLLARSGQFDEAENIISKMSMKPDK 473


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 225/431 (52%), Gaps = 22/431 (5%)

Query: 20  QSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++R++L +  C      G + +  +  +    RN + +  +IS +  +G+ + A + F  
Sbjct: 170 RNRVLLMHVKC------GMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFIL 223

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M             + + AS  ++    G+Q+ +   K+G    +FV  ALID+Y+K   
Sbjct: 224 MREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGS 283

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DA  +FDE+P K  V  N++++GY         L+L   M   G+  DHFT S ++R 
Sbjct: 284 LEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRI 343

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+ L++    +QVHA ++R     G DV   ++L++ Y K G V  A  VF+    R   
Sbjct: 344 CSRLASVARAKQVHASLVRN--GFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCR--- 398

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               +++ W +++  YG +G+ +E I ++E ML  G  P+ V F+ V+SACS +G  + G
Sbjct: 399 ----NIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERG 454

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            E F+ M  D+K++P   H++C+++LL R G LD+A+ LI     +     + +MW ALL
Sbjct: 455 WEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIR----KAPFQPTANMWAALL 510

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
            AC   G  ELGK AA+K   ++P  +  Y++L N+Y       E   + + +K KGL+ 
Sbjct: 511 RACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRM 570

Query: 437 DVGCSWIEVTG 447
              CSWIEV  
Sbjct: 571 LPACSWIEVNN 581



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 159/351 (45%), Gaps = 43/351 (12%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSL-TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
           AL+ F    +   F   Y+   +L  A   +K  R  K++  ++  +G+    ++ + ++
Sbjct: 115 ALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVL 174

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
            ++ K  ++ DA  +FDE+P +N+V    ++SGY ++  +     L  LM     D    
Sbjct: 175 LMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPR 234

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           T + ++RA AGL     GRQ+H+  I+    LG D+F+  +LI+MY KCG +  A  VF+
Sbjct: 235 TFATMIRASAGLEIIFPGRQLHSCAIK--AGLGQDIFVSCALIDMYSKCGSLEDAHCVFD 292

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                     +K +V W S++  Y  +GY +E + LY  M  +G K D   F  +I  CS
Sbjct: 293 EMP-------DKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICS 345

Query: 309 HTGQVKLGIEYFEWMVHD-YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR----- 362
               V    +    +V + + L+      + LVD   + G++D A  + + M  R     
Sbjct: 346 RLASVARAKQVHASLVRNGFGLDVVAN--TALVDFYSKWGKVDDARHVFDRMSCRNIISW 403

Query: 363 ----------GHGSSSVSMWG---------------ALLSACHDCGKFELG 388
                     GHG  ++ M+                A+LSAC   G FE G
Sbjct: 404 NALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERG 454


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 228/438 (52%), Gaps = 39/438 (8%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
            KK L    +    +  R+ + +N++I+ + +NG    A + F  + +  +F  T A+ S
Sbjct: 227 RKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWT-AMVS 285

Query: 92  SLTASTSVKDARF-------GKQVQAHVTKSGWLSSVFVGSA-----------------L 127
               +  + +A           +V  +   +G++ S  +  A                 +
Sbjct: 286 GFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTM 345

Query: 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
           +  YA+   I  A+++FDE+P ++ +   A++SGY ++      L L   M   G   + 
Sbjct: 346 VTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNR 405

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
             L+  L +CA ++A E G+Q+H  +++     G      ++L+ MYGKCG + +A  VF
Sbjct: 406 SALACALSSCAEIAALELGKQLHGRLVKAGFQTG--YIAGNALLAMYGKCGSIEEAFDVF 463

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
                  E    KD+V W +M+  Y R+G+ KE + L+E+M M   KPD+V  V V+SAC
Sbjct: 464 -------EDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSAC 515

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           SHTG V  G+EYF  M  +Y +    +HY+C++DLL RAG LD+A  L+  M        
Sbjct: 516 SHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSM----PFYP 571

Query: 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRE 427
             + WGALL A    G  ELG+ AA+K  E++P N G+YV+LSNLYA    W E+ ++R 
Sbjct: 572 DAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRS 631

Query: 428 LMKEKGLKKDVGCSWIEV 445
            M++KG+KK  G SW+E+
Sbjct: 632 KMRDKGVKKVPGYSWVEI 649



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/399 (18%), Positives = 166/399 (41%), Gaps = 45/399 (11%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           NL         +  ++ + +N ++S F +NG    A K F  M V    +    L S+  
Sbjct: 137 NLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNE-ISWNGLLSAYV 195

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
            +  ++DAR     +   +K  W   +   + L+  Y +   + DA  +FD +PV++ + 
Sbjct: 196 QNGRIEDAR-----RLFDSKMDW--EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKIS 248

Query: 155 ANALLSGYCEAKLWAGGLELVRLMP-----ALGLDYDHFTLSALLRACAGL-------SA 202
            N +++GY +  L +    L   +P     A       F  + +L     +       + 
Sbjct: 249 WNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNE 308

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQ---------SSLIEMYGKCGLVTKALQVFNLAGHR 253
             +   +  Y+  +      ++F Q         ++++  Y +CG + +A  +F+    R
Sbjct: 309 VSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQR 368

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  D + W +M+  Y ++G  +E + L+  M  +G   +  A    +S+C+    +
Sbjct: 369 -------DCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAAL 421

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           +LG +    +V     + G    + L+ +  + G +++A+ +  ++ ++      +  W 
Sbjct: 422 ELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEK-----DIVSWN 475

Query: 374 ALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            +++  A H  GK  L    + K + + P +V +  +LS
Sbjct: 476 TMIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLS 513



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 114/275 (41%), Gaps = 48/275 (17%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +F+++P ++ +  N +LSGY +    +    L   MP    + D  + +A+L   A 
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQ 165

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN----------- 248
               E  R++   M+ K     N++   + L+  Y + G +  A ++F+           
Sbjct: 166 NGFVEEARKIFDQMLVK-----NEISW-NGLLSAYVQNGRIEDARRLFDSKMDWEIVSWN 219

Query: 249 --LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
             + G+  +  ++           +D + W  M+  Y +NG   E  +L+E + +     
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIR---- 275

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           D  A+  ++S     G +      FE M      E     ++ ++    ++ +++KA +L
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMP-----EKNEVSWNAMIAGYVQSQQIEKAREL 330

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
            ++M  R     + S W  +++    CG  +  K+
Sbjct: 331 FDQMPSR-----NTSSWNTMVTGYAQCGNIDQAKI 360



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 28/212 (13%)

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D+   + ++  Y K G ++ A  +FN           KDVV W +ML  + +NG+ +E  
Sbjct: 121 DLISWNVMLSGYVKNGNLSAARALFNQMPE-------KDVVSWNAMLSGFAQNGFVEEAR 173

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           K+++ ML+     +E+++  ++SA    G+++     F     D K++     ++CL+  
Sbjct: 174 KIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRLF-----DSKMDWEIVSWNCLMGG 224

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL--ELDP 400
             R   LD A  L + M  R   S     W  +++     G  + G L+  + L  EL  
Sbjct: 225 YVRKKRLDDARSLFDRMPVRDKIS-----WNIMIT-----GYAQNGLLSEARRLFEELPI 274

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
            +V  +  + + + +  M DE  ++ E M EK
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK 306


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/414 (31%), Positives = 223/414 (53%), Gaps = 15/414 (3%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +L T       +  RN   +N +++    +G    +L  F  M   G+  D Y L S   
Sbjct: 15  DLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFR 74

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
               ++D   G+QV A+V +SG    + VGS+L  +Y +   + D E     +P  N V 
Sbjct: 75  CCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVS 134

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            N  +SG  +     G LE   LM   G++ +  T  + + +C+ L+A   G+Q+HA  I
Sbjct: 135 CNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAI 194

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV-FNLAGHRLEGEINKDVVLWTSMLGVYG 273
           +    +   V + +SL+ MY +CG +  + +V    +G         D+VL ++M+  YG
Sbjct: 195 KT--GVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSG--------TDLVLCSAMISAYG 244

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +G+ ++ + L++ M+  G +P+EV F+T++ ACSH+G    G+  FE M   Y L+P  
Sbjct: 245 FHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSV 304

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           +HY+C+VDLL R+G L++A  LI  M  +  G     +W  LLSAC    KF++ +  A+
Sbjct: 305 KHYTCIVDLLGRSGCLNEAEDLILSMPVQPDG----VIWKTLLSACKTQKKFDMAERIAE 360

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           + +ELDPH+   YV+LSN+ A    W+++ ++RE M+E+ ++K+ G SW+E+ G
Sbjct: 361 RVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKG 414



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYD 186
           LI  Y K   +  A  +FDE+P +N    NA+++G   + L    L     M   G+  D
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 65

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
            + L +L R CAGL     GRQVHAY++R    L  D+ + SSL  MY +CG +      
Sbjct: 66  EYGLGSLFRCCAGLRDVVSGRQVHAYVVRS--GLDRDMCVGSSLAHMYMRCGFLRDGEAA 123

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
                  L    + ++V   + +    +NG  +  ++ +  M   G + + V FV+ +++
Sbjct: 124 -------LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTS 176

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDR 362
           CS    +  G +     +H   ++ G +      + LV +  R G L  + ++  E    
Sbjct: 177 CSDLAALAQGQQ-----IHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLE---- 227

Query: 363 GHGSSSVSMWGALLSA--CHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            +  + + +  A++SA   H  G+  +G      A   +P+ V    +L
Sbjct: 228 -YSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLL 275


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/414 (31%), Positives = 223/414 (53%), Gaps = 15/414 (3%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +L T       +  RN   +N +++    +G    +L  F  M   G+  D Y L S   
Sbjct: 123 DLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFR 182

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
               ++D   G+QV A+V +SG    + VGS+L  +Y +   + D E     +P  N V 
Sbjct: 183 CCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVS 242

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            N  +SG  +     G LE   LM   G++ +  T  + + +C+ L+A   G+Q+HA  I
Sbjct: 243 CNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAI 302

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV-FNLAGHRLEGEINKDVVLWTSMLGVYG 273
           +    +   V + +SL+ MY +CG +  + +V    +G         D+VL ++M+  YG
Sbjct: 303 KT--GVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSG--------TDLVLCSAMISAYG 352

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +G+ ++ + L++ M+  G +P+EV F+T++ ACSH+G    G+  FE M   Y L+P  
Sbjct: 353 FHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSV 412

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           +HY+C+VDLL R+G L++A  LI  M  +  G     +W  LLSAC    KF++ +  A+
Sbjct: 413 KHYTCIVDLLGRSGCLNEAEDLILSMPVQPDG----VIWKTLLSACKTQKKFDMAERIAE 468

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           + +ELDPH+   YV+LSN+ A    W+++ ++RE M+E+ ++K+ G SW+E+ G
Sbjct: 469 RVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKG 522



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYD 186
           LI  Y K   +  A  +FDE+P +N    NA+++G   + L    L     M   G+  D
Sbjct: 114 LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 173

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
            + L +L R CAGL     GRQVHAY++R    L  D+ + SSL  MY +CG +      
Sbjct: 174 EYGLGSLFRCCAGLRDVVSGRQVHAYVVRS--GLDRDMCVGSSLAHMYMRCGFLRDGEAA 231

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
                  L    + ++V   + +    +NG  +  ++ +  M   G + + V FV+ +++
Sbjct: 232 -------LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTS 284

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDR 362
           CS    +  G +     +H   ++ G +      + LV +  R G L  + ++  E    
Sbjct: 285 CSDLAALAQGQQ-----IHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLE---- 335

Query: 363 GHGSSSVSMWGALLSA--CHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            +  + + +  A++SA   H  G+  +G      A   +P+ V    +L
Sbjct: 336 -YSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLL 383


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/405 (33%), Positives = 225/405 (55%), Gaps = 14/405 (3%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N    +  +N   +NV+I  +  NG    A+  +  M  +G+  D + L   L A +++ 
Sbjct: 103 NLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALS 162

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
               G+ +  +V KSGW   +FVG+ALID+YAK   + DA  +FD+I V+++V  N++L+
Sbjct: 163 AIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLA 222

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            Y +       + L R M A G+     TL  ++ + A ++   +GR++H +  R     
Sbjct: 223 AYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQS 282

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            + V  +++LI+MY KCG V  AL +F     RL     K VV W +++  Y  +G    
Sbjct: 283 NDKV--KTALIDMYAKCGSVKVALALFE----RLR---EKRVVSWNAIITGYAMHGLAVG 333

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            + L++ M     +PD + FV V++ACS    +  G   +  MV DY + P  +HY+C++
Sbjct: 334 ALDLFDKM-RKEDRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMI 392

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL   G+LD+A+ LI  M  +        +WGALL++C   G  EL +LA +K +EL+P
Sbjct: 393 DLLGHCGQLDEAYDLIRNMSVK----PDSGVWGALLNSCKIHGNVELAELALEKLIELEP 448

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            + G YV+L+N+YA+   W+ + +LR++M +K +KK++ CSWIEV
Sbjct: 449 DDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEV 493



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 139/293 (47%), Gaps = 19/293 (6%)

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           Y   S L +    K    GKQ+ A     G   +  + + L+ LYA    + +A  +FD+
Sbjct: 48  YGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDK 107

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           IP +N    N L+ GY         + L   M   GL  D+FTL  +L+AC+ LSA   G
Sbjct: 108 IPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEG 167

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           R +H Y+I+       D+F+ ++LI+MY KCG V  A +VF+         + +D VLW 
Sbjct: 168 RSIHEYVIKS--GWERDLFVGAALIDMYAKCGCVMDAGRVFDKI-------VVRDAVLWN 218

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY--FEWMV 324
           SML  Y +NG+  E I L   M  NG +P E   VTVIS+ +    +  G E   F W  
Sbjct: 219 SMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWR- 277

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             +  +   +  + L+D+  + G +  A  L   + ++      V  W A+++
Sbjct: 278 --HGFQSNDKVKTALIDMYAKCGSVKVALALFERLREK-----RVVSWNAIIT 323



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 23/196 (11%)

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
           H+  ++LL++C    A   G+Q+HA           D  + + L+ +Y     +  A  +
Sbjct: 47  HYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQD--LATKLVHLYAVSNSLLNARNL 104

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           F+           +++ LW  ++  Y  NG     I LY  ML  G +PD      V+ A
Sbjct: 105 FDKIP-------KQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKA 157

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDR 362
           CS    +  G       +H+Y ++ G E      + L+D+  + G +  A ++ ++++ R
Sbjct: 158 CSALSAIGEGRS-----IHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVR 212

Query: 363 GHGSSSVSMWGALLSA 378
                   +W ++L+A
Sbjct: 213 -----DAVLWNSMLAA 223


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 240/432 (55%), Gaps = 22/432 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +  QS L+  Y+ C +  +  ++ N +K    R+ + +  +IS FC+N   + AL+ ++ 
Sbjct: 392 VALQSALLTMYSKCGNSDDANSIFNTIK---GRDVVAWGSMISGFCQNRKYMEALEFYNS 448

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M V+G   D+  + S ++A T +K+   G  +     KSG    VFV S+L+D+Y+K   
Sbjct: 449 MTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNF 508

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
              +  +F ++P+KN V  N+++S YC   L    + L   M   GL  D  +++++L +
Sbjct: 509 PKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVS 568

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            + ++    G+ VH Y+IR+   + +D+ ++++LI+MY KCG +  A  +F       + 
Sbjct: 569 VSSVAVLRKGKAVHGYLIRQ--RIPSDLQLENALIDMYIKCGFLKYAQHIF-------QN 619

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            +  ++V W  M+   G +G + + + L++ M   G  PD++ F++++++C+H G ++ G
Sbjct: 620 MLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLLTSCNHCGFIEEG 679

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM---LDRGHGSSSVSMWG 373
           ++ F+ M  ++ +EP  EHY  +VDLL RAG LD A+  +  +    DR       S+W 
Sbjct: 680 LKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPDR-------SIWL 732

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           +LL +C      ELGKLAA K L+++P     YV L NLY +  + D    LR  MKEKG
Sbjct: 733 SLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQLLNLYGENELQDRAANLRASMKEKG 792

Query: 434 LKKDVGCSWIEV 445
           LKK  GCSWIEV
Sbjct: 793 LKKTPGCSWIEV 804



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 154/300 (51%), Gaps = 18/300 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +NV+I  F  NG    +L+ +       + L + +  S+L+A    +   FG QV 
Sbjct: 220 NVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVH 279

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
             + K G+ +  +V ++L+ +Y+K  L+ DAE +FD++ VK +   NA++S Y       
Sbjct: 280 CDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSY 339

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
            GL++ + M  L +  D  T + +L +C  + + +FGR +HA ++++   + ++V +QS+
Sbjct: 340 DGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKR--PIQSNVALQSA 397

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L+ MY KCG    A  +FN    R       DVV W SM+  + +N  + E ++ Y +M 
Sbjct: 398 LLTMYSKCGNSDDANSIFNTIKGR-------DVVAWGSMISGFCQNRKYMEALEFYNSMT 450

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCR 345
           + G KPD     +V+SAC+    V LG       +H   ++ G E      S LVD+  +
Sbjct: 451 VYGEKPDSDIMASVVSACTGLKNVNLGC-----TIHGLAIKSGLEQDVFVASSLVDMYSK 505



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 151/330 (45%), Gaps = 15/330 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +  NG     LK +  M V  I  D+    + L++   V    FG+ + A + 
Sbjct: 325 WNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELV 384

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K    S+V + SAL+ +Y+K     DA  +F+ I  ++ V   +++SG+C+ + +   LE
Sbjct: 385 KRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALE 444

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M   G   D   +++++ AC GL     G  +H   I+    L  DVF+ SSL++M
Sbjct: 445 FYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKS--GLEQDVFVASSLVDM 502

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K            ++G+       K++V W S++  Y RNG     I L+  M   G 
Sbjct: 503 YSK-------FNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGL 555

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            PD V+  +V+ + S    ++ G     +++   ++    +  + L+D+  + G L  A 
Sbjct: 556 FPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQ-RIPSDLQLENALIDMYIKCGFLKYAQ 614

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCG 383
            +   ML      +++  W  +++ C   G
Sbjct: 615 HIFQNML-----QTNLVTWNIMIAGCGSHG 639



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 142/328 (43%), Gaps = 22/328 (6%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG--KQVQAH 111
           +N +++ + R G     +  F  M + G+  D Y+LC  L AS    D   G  KQ+  +
Sbjct: 124 WNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGAS----DGHLGYAKQIHGY 179

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA-NALLSGYCEAKLWAG 170
             +  +    F+ S LI +Y       DA  +F E+  K +V A N ++ G+ E  LW  
Sbjct: 180 SVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWEN 239

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            LE+  L     +     + ++ L AC       FG QVH  +++      ND ++ +SL
Sbjct: 240 SLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVK--LGFENDPYVCTSL 297

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           + MY KC LV  A  VF+           K   LW +M+  Y  NG   + +K+Y+ M +
Sbjct: 298 LTMYSKCKLVEDAENVFDQVSV-------KKTELWNAMISAYVGNGRSYDGLKIYKQMKV 350

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
               PD +    V+S+C   G    G      +V    ++      S L+ +  + G  D
Sbjct: 351 LQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKR-PIQSNVALQSALLTMYSKCGNSD 409

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSA 378
            A  + N +  R      V  WG+++S 
Sbjct: 410 DANSIFNTIKGR-----DVVAWGSMISG 432



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 150/329 (45%), Gaps = 24/329 (7%)

Query: 91  SSLTASTSVKDARFGKQVQAHV-TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           S L A   + + ++GK + + + TK  + S  ++ ++LI+ Y K     +A  +FD++P 
Sbjct: 54  SLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKLPE 113

Query: 150 -----KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
                ++    N++++GY        G+     M   G+  D ++L  LL A  G     
Sbjct: 114 SEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDG--HLG 171

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
           + +Q+H Y +RK      D F++S LI MY  CG    A ++F       E E   +VV 
Sbjct: 172 YAKQIHGYSVRKV--FYGDPFLESGLIYMYFSCGRPLDAWRLFK------ELEDKGNVVA 223

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W  M+G +G NG ++  +++Y        K    +F + +SAC     V  G++    +V
Sbjct: 224 WNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLV 283

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
                E  P   + L+ +  +   ++ A  + +++           +W A++SA    G+
Sbjct: 284 K-LGFENDPYVCTSLLTMYSKCKLVEDAENVFDQV-----SVKKTELWNAMISAYVGNGR 337

Query: 385 FELG-KLAAQ-KALELDPHNVGIYVMLSN 411
              G K+  Q K L++ P ++    +LS+
Sbjct: 338 SYDGLKIYKQMKVLQIPPDSLTATNVLSS 366



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 22/210 (10%)

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           L+   FT  +LL+AC  LS  ++G+ +H+ +I K     +D ++ +SLI  Y KCG    
Sbjct: 45  LNATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGF-FYSDPYITTSLINFYFKCGSFGN 103

Query: 243 ALQVFN-LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           A++VF+ L    + G+   DV  W S++  Y R G+ KE I  +  M + G +PD  +  
Sbjct: 104 AVKVFDKLPESEVSGQ---DVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLC 160

Query: 302 TVISACS-HTGQVKLGIEYFEWMVHDYKLEP----GPEHYSCLVDLLCRAGELDKAWKLI 356
            ++ A   H G  K         +H Y +       P   S L+ +    G    AW+L 
Sbjct: 161 ILLGASDGHLGYAK--------QIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLF 212

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            E+ D+G+    V  W  ++    + G +E
Sbjct: 213 KELEDKGN----VVAWNVMIGGFGENGLWE 238


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/432 (31%), Positives = 223/432 (51%), Gaps = 48/432 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  + S + + G P   +  F  M   G+  +   + S L A   +KD + GK++
Sbjct: 142 RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEI 201

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                + G + ++FV SAL+ LYAK L + +A ++FD +P ++ V  N +L+ Y + K +
Sbjct: 202 HGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEY 261

Query: 169 AGG-----------------------------------LELVRLMPALGLDYDHFTLSAL 193
             G                                   +E+ R M  +G   +  T+S++
Sbjct: 262 EKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSI 321

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L AC+       G+++H Y+ R    +G D+   ++L+ MY KCG +  +  VF++    
Sbjct: 322 LPACSFSENLRMGKEIHCYVFRHW-KVG-DLTSTTALLYMYAKCGDLNLSRNVFDMMRR- 378

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                 KDVV W +M+     +G  KE + L++ ML++  +P+ V F  V+S CSH+  V
Sbjct: 379 ------KDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLV 432

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G++ F  M  D+ +EP   HYSC+VD+  RAG L++A+K I  M        + S WG
Sbjct: 433 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGM----PMEPTASAWG 488

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL+AC      EL K++A+K  E++P+N G YV L N+     MW E  Q+R LMKE+G
Sbjct: 489 ALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERG 548

Query: 434 LKKDVGCSWIEV 445
           + K  GCSW++V
Sbjct: 549 ITKTPGCSWLQV 560



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 137/274 (50%), Gaps = 9/274 (3%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           +P   + +IS    +G    A+K +S +   GI  D     ++  A     DA   K+V 
Sbjct: 42  DPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVH 101

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
              T+ G +S VFVG+ALI  Y K   +  A  +FD++ V++ V   +L S Y +     
Sbjct: 102 DDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPR 161

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
            G+++ R M   G+  +  T+S++L ACA L   + G+++H + +R    +  ++F+ S+
Sbjct: 162 KGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRH--GMVVNLFVCSA 219

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L+ +Y KC  V +A  VF+L  HR       DVV W  +L  Y +N  +++   L+  M 
Sbjct: 220 LVSLYAKCLSVREARMVFDLMPHR-------DVVSWNGVLTAYFKNKEYEKGFSLFLKMS 272

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            +G + DE  +  VI  C   G+ +  +E F  M
Sbjct: 273 RDGVRADEATWNAVIGGCMENGRSEEAVEMFRKM 306



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 23/270 (8%)

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           +G  LI +   +   + A  +FD IP  +    + L+S      L    +++   +   G
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D     A  +ACA    A   ++VH    R  C + +DVF+ ++LI  YGKC  V  
Sbjct: 74  IKPDMPVFLAAAKACAVSGDALRVKEVHDDATR--CGVMSDVFVGNALIHAYGKCKCVEG 131

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A +VF       +  + +DVV WTS+   Y + G+ ++ + ++  M  +G KP+ +   +
Sbjct: 132 ARRVF-------DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSS 184

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINE 358
           ++ AC+    +K G E     +H + +  G        S LV L  +   + +A  + + 
Sbjct: 185 ILPACAELKDLKSGKE-----IHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDL 239

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           M  R      V  W  +L+A     ++E G
Sbjct: 240 MPHR-----DVVSWNGVLTAYFKNKEYEKG 264


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 209/402 (51%), Gaps = 13/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ +N + +  ++  + +    + AL  F+ M   G+ LD Y     L A   +++  FG
Sbjct: 172 MSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFG 231

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+  H+ K G  S V VG+ L+D Y K   +  A   F+ I   N V  +AL++GYC+ 
Sbjct: 232 RQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQM 291

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +   L+    +    +D + FT +++ +AC+ L+    G Q HA  I+   +L     
Sbjct: 292 GEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKS--SLVAYQH 349

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
            +S++I MY +CG +  A +VF       E   + D V WT+++  Y   G   E +KL+
Sbjct: 350 GESAMITMYSRCGRLDYATRVF-------ESIDDPDAVAWTAIIAGYAYQGNAPEALKLF 402

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M   G +P+ V F+ V++ACSH+G V  G +Y E M  +Y +    +HY C+VD+  R
Sbjct: 403 RRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSR 462

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L +A +LI  M      S     W  LL  C      E+G+LAA+   +LDP +   
Sbjct: 463 AGFLQEALELIRSM----PFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAG 518

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           Y+++ NLYA F  W E   +R++M E+ L+K++ CSWI V G
Sbjct: 519 YILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKG 560



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 151/332 (45%), Gaps = 21/332 (6%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G+L +  K  +    RN + +N +IS +  NG        FS M       +       L
Sbjct: 59  GSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFL 118

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            +  +      GKQ+ +H  +SG  S+  V +A+ ++Y K   +  AEL+F+++  KN+V
Sbjct: 119 RSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAV 178

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
               ++ GY +A+     L L   M   G++ D +  S +L+ACAGL    FGRQ+H ++
Sbjct: 179 AWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHI 238

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           ++    L ++V + + L++ Y KC  +  A + F             + V W++++  Y 
Sbjct: 239 VK--LGLESEVSVGTPLVDFYVKCSNLESATKAFEWISE-------PNDVSWSALITGYC 289

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           + G F+E +K +E++       +   + ++  ACS       G +      H   ++   
Sbjct: 290 QMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQ-----AHADAIKSSL 344

Query: 334 EHY----SCLVDLLCRAGELDKAWKLINEMLD 361
             Y    S ++ +  R G LD A ++   + D
Sbjct: 345 VAYQHGESAMITMYSRCGRLDYATRVFESIDD 376



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 142/336 (42%), Gaps = 55/336 (16%)

Query: 98  SVKDAR-FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
           S+ D R F +Q+Q  V         F+ ++++ +Y K   + DA  +FDE+  +N V  N
Sbjct: 25  SLFDGRLFHEQMQRTVKNP----PEFLENSVLKMYCKCGSLADARKVFDEMRERNLVSWN 80

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
            ++S Y E  ++  G  +   M  L    +  T    LR+    S  E G+Q+H++ IR 
Sbjct: 81  TIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRS 140

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
              LG++  + +++  MY KCG +  A  VF       E    K+ V WT ++  Y +  
Sbjct: 141 --GLGSNASVNTAISNMYVKCGWLEGAELVF-------EKMSEKNAVAWTGIMVGYTQAE 191

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQVKLGIEY------ 319
              + + L+  M+  G + DE  F  V+ AC+           H   VKLG+E       
Sbjct: 192 RQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGT 251

Query: 320 ------------------FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
                             FEW+      EP    +S L+   C+ GE ++A K    +  
Sbjct: 252 PLVDFYVKCSNLESATKAFEWIS-----EPNDVSWSALITGYCQMGEFEEALKTFESLRT 306

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397
           R    +S + + ++  AC     F  G  A   A++
Sbjct: 307 RSVDINSFT-YTSIFQACSALADFNSGAQAHADAIK 341



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 121/272 (44%), Gaps = 16/272 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +H H  + GL     +   + L+  Y  C    NL + T   ++++  N + ++ +I+ 
Sbjct: 233 QIHGHIVKLGLE--SEVSVGTPLVDFYVKC---SNLESATKAFEWISEPNDVSWSALITG 287

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           +C+ G    ALKTF  +    + ++++   S   A +++ D   G Q  A   KS  ++ 
Sbjct: 288 YCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAY 347

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
               SA+I +Y++   +  A  +F+ I   ++V   A+++GY         L+L R M  
Sbjct: 348 QHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQD 407

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCG 238
            G+  +  T  A+L AC+       GRQ   Y+     N G    +     ++++Y + G
Sbjct: 408 CGVRPNAVTFIAVLTACSHSGLVIEGRQ---YLESMSSNYGVATTIDHYDCMVDIYSRAG 464

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            + +AL++            + D + W  +LG
Sbjct: 465 FLQEALELIR------SMPFSPDAMSWKCLLG 490


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 244/450 (54%), Gaps = 31/450 (6%)

Query: 7    FETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS 66
            FET L +       S L+  Y+ C   K+   L + +     RN + +  +I+ + +N  
Sbjct: 2046 FETDLFV------SSALIDMYSKCGQLKDARALFDEIPL---RNVVSWTSMITGYVQNEQ 2096

Query: 67   PLYALKTF-SFMHV-------HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
               AL  F  F+         + + LD+  + S L+A + V      + V   V K G+ 
Sbjct: 2097 ADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFD 2156

Query: 119  SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-L 177
             S+ VG+ L+D YAK      ++ +FD +  K+ +  N++++ Y ++ L    LE+   +
Sbjct: 2157 GSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGM 2216

Query: 178  MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
            +  +G+ Y+  TLSA+L ACA   A   G+ +H  +I+   +L  +V + +S+I+MY KC
Sbjct: 2217 VRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIK--MDLEYNVCVGTSIIDMYCKC 2274

Query: 238  GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
            G V  A + F+    R++    K+V  WT+M+  YG +G  KE + ++  M+  G KP+ 
Sbjct: 2275 GRVEMAKKTFD----RMK---EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 2327

Query: 298  VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
            + FV+V++ACSH G V+ G  +F  M H Y +EPG EHY C+VDL  RAG L++A+ LI 
Sbjct: 2328 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 2387

Query: 358  EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
             M           +WG+LL AC      +LG++AAQK  ELDP N G YV+LSNLYA   
Sbjct: 2388 RM----KMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAG 2443

Query: 418  MWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             W ++ ++R LMK + L K  G S +E+ G
Sbjct: 2444 RWADVERMRMLMKNRQLVKPPGFSLVELKG 2473



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 162/350 (46%), Gaps = 42/350 (12%)

Query: 43  LKFLNPRNPLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           L F   +NP  F  N++I     NG    AL  +  M   GI  D +     + A T+  
Sbjct: 80  LLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFL 139

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL-------------------------- 134
               GK V   + K G+   VFV + LID Y K                           
Sbjct: 140 SIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVIS 199

Query: 135 -LL----IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
            L+    + +A  +FDEIP KN V   A+++GY   +     LEL + M A  +  + +T
Sbjct: 200 GLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYT 259

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           + +L++AC  +     GR +H Y I+ C  +G  V++ ++LI+MY KCG +  A++VF  
Sbjct: 260 MVSLIKACTEMGILTLGRGIHDYAIKNCIEIG--VYLGTALIDMYSKCGSIKDAIEVF-- 315

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                E    K +  W SM+   G +G  +E + L+  M     KPD + F+ V+ AC H
Sbjct: 316 -----ETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVH 370

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
              VK G  YF  M   Y + P PEHY C+ +L  R+  LD+A+K   E+
Sbjct: 371 IKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 169/348 (48%), Gaps = 32/348 (9%)

Query: 44   KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
            K+++  N   +N VI+D  R G  + AL+ FS +   G+     +   ++ + +++ D  
Sbjct: 1973 KYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLV 2032

Query: 104  FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
             G+         G+ + +FV SALID+Y+K   + DA  +FDEIP++N V   ++++GY 
Sbjct: 2033 SGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYV 2092

Query: 164  EAKLWAGGL--------ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
            + +     L        E   +     +  D   + ++L AC+ +S       VH ++++
Sbjct: 2093 QNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVK 2152

Query: 216  KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
            K       + + ++L++ Y KCG    + +VF+           KD + W SM+ VY ++
Sbjct: 2153 K--GFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEE-------KDDISWNSMIAVYAQS 2203

Query: 276  GYFKEVIKLYEAMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
            G   E ++++  M+ + G + + V    V+ AC+H G ++ G       +HD  ++   E
Sbjct: 2204 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG-----KCIHDQVIKMDLE 2258

Query: 335  HYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            +  C    ++D+ C+ G ++ A K  + M ++     +V  W A+++ 
Sbjct: 2259 YNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK-----NVKSWTAMVAG 2301



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 149/334 (44%), Gaps = 42/334 (12%)

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           K+ +  +Q+ A + +SG  +   +   LI LY+    I  A L+F +I    +   N ++
Sbjct: 38  KNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLII 97

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
                  L    L L + M   G+  D FT   +++AC    + + G+ VH  +I+    
Sbjct: 98  RANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK--YG 155

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFN-----------------------LAGHRLEG 256
              DVF+Q++LI+ Y KCG    AL+VF                            R+  
Sbjct: 156 FSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFD 215

Query: 257 EI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
           EI +K+VV WT+M+  Y RN   +E ++L++ M      P+E   V++I AC+  G + L
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTL 275

Query: 316 GIEYFEWMVHDYK----LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
           G       +HDY     +E G    + L+D+  + G +  A ++   M  +     S+  
Sbjct: 276 G-----RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-----SLPT 325

Query: 372 WGALLSA--CHDCGKFELGKLAAQKALELDPHNV 403
           W +++++   H  G+  L   +  + + + P  +
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 359



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 18/228 (7%)

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           RQ+HA +IR    L ND  +   LI +Y   G +  A+ +F    ++++   N     W 
Sbjct: 44  RQIHAKIIR--SGLSNDQLLTRKLIHLYSTHGRIAYAILLF----YQIQ---NPCTFTWN 94

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
            ++     NG  ++ + LY+ M+  G   D+  F  VI AC++   + LG      ++  
Sbjct: 95  LIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK- 153

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           Y         + L+D   + G    A K+  +M  R     +V  W  ++S    CG  +
Sbjct: 154 YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-----NVVSWTTVISGLISCGDLQ 208

Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
             +       E+   NV  +  + N Y +    +E  +L + M+ + +
Sbjct: 209 EARRIFD---EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 236/444 (53%), Gaps = 47/444 (10%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G+L +  +F +    RN + +N +I+ + + G+   A   F  M   G+  D + L S L
Sbjct: 159 GSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLL 218

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK---LLLIHD----------- 139
            A ++  +  FGK V +H+   G    + + +AL+D+Y K   LL+ H            
Sbjct: 219 FACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAV 278

Query: 140 -----------------AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
                            A   F++IP K+ +  NA++S Y +   +   L+L   M  LG
Sbjct: 279 SWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLG 338

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           L  D FTL+A+L AC  L     G+ +H  +     N G  +F  +SL++MY +CG V  
Sbjct: 339 LAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALF--NSLLDMYARCGQVDT 396

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A+ +F+          +K+V+ W +++G    +G  ++ +  + +M+ +   PDE+ FV 
Sbjct: 397 AISLFSEMP-------SKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVA 449

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           ++SAC+H G ++ G  YF+ M H Y ++PG EHY+C+VDLL R G+L KA  LI +M  R
Sbjct: 450 LLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMR 509

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422
                 V +WGALL AC   G  ++GK   ++ LEL+  + G++V++SN+  +   W+++
Sbjct: 510 ----PDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDM 565

Query: 423 GQLRELMKEKGLKKDVGCSWIEVT 446
            +LR+LM+E G+KK++G S IE  
Sbjct: 566 KRLRKLMREWGMKKNMGVSSIETN 589



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 191/448 (42%), Gaps = 68/448 (15%)

Query: 49  RNPLP----FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           R P P    +N +I  +C +  P  AL     M   GI  + + L   L A   V+    
Sbjct: 69  RIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEH 128

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
                  V K G++  VFVG+AL+  YA    + D+   FDE+  +N V  N++++GY +
Sbjct: 129 VMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQ 188

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           A        L   M   GL  D FTL +LL AC+     EFG+ VH++++ + C +  D+
Sbjct: 189 AGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRI--DL 246

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHR------------------------LEGEINK 260
            + ++L++MYGKCG +  A   F++   +                         E    K
Sbjct: 247 ILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEK 306

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
            ++ W +M+  Y + G F E + LY  M + G  PDE     V+SAC   G +  G +  
Sbjct: 307 SIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASG-KMI 365

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG-------------HGSS 367
              + D    PG   ++ L+D+  R G++D A  L +EM  +              HG +
Sbjct: 366 HDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRA 425

Query: 368 SVSM-----------------WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
             ++                 + ALLSAC+  G  E G+   Q           +Y +  
Sbjct: 426 QDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRH-------VYNVKP 478

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDV 438
            +    CM D +G+  +L K   L KD+
Sbjct: 479 GVEHYACMVDLLGRGGQLAKAVDLIKDM 506



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 19/204 (9%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD IP  +    N+L+  YC +      L L+R M   G+  + FTL  LL+ACA 
Sbjct: 63  ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           + A E     H  +++        VF+ ++L+  Y   G +  + + F       +  ++
Sbjct: 123 VQAWEHVMVTHGVVVK--LGFVGQVFVGNALLHSYASAGSLGDSRRFF-------DEMVD 173

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           ++VV W SM+  Y + G  +E   L+E M   G   DE   V+++ ACS  G ++ G   
Sbjct: 174 RNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGK-- 231

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLL 343
              +VH + L  G     C +DL+
Sbjct: 232 ---LVHSHLLVRG-----CRIDLI 247


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/398 (32%), Positives = 215/398 (54%), Gaps = 13/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + FN++   + R+ SP  A   F  +   G+  D Y   S L A  S K  R G  +
Sbjct: 93  KDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGL 152

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G   ++++   LI++YA+   ++ A  +FDE+     V  NA+++GY  +   
Sbjct: 153 HCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQP 212

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L R + A  ++    T+ +++ +CA L A + G+ +H Y+ +K       V + +
Sbjct: 213 NEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKK--GFDKYVKVNT 270

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+M+ KCG +T A+ +F       EG   +D   W++M+  +  +G   + I ++E M
Sbjct: 271 ALIDMFAKCGSLTDAISIF-------EGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEM 323

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G +PDE+ F+ ++ ACSH G V+ G  YF  M   Y + PG +HY C+VDLL RAG 
Sbjct: 324 KREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGH 383

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD+A+  +    D+    ++  +W  LLSAC   G  E+ K   ++  ELD  + G YV+
Sbjct: 384 LDEAYNFV----DKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVI 439

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           LSNLYA+   W+++  LR+LMK++G+ K  GCS +EV 
Sbjct: 440 LSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVN 477



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 40/228 (17%)

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           +LL  C  L+     +Q+ AY I+   NL +D+ + + LI     C L        + A 
Sbjct: 34  SLLSKCTSLNEL---KQIQAYTIKT--NLQSDISVLTKLINF---CTL-NPTTSYMDHAH 84

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS--- 308
           H  +  ++KD++L+  M   Y R+        L+  +L +G  PD+  F +++ AC+   
Sbjct: 85  HLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSK 144

Query: 309 --------HTGQVKLGIEYFEWM-------------------VHDYKLEPGPEHYSCLVD 341
                   H   VKLG+ +  ++                   V D   +P    Y+ ++ 
Sbjct: 145 ALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIIT 204

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
              R+ + ++A  L  E+       + V+M   ++S C   G  +LGK
Sbjct: 205 GYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMS-CALLGALDLGK 251


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/397 (32%), Positives = 212/397 (53%), Gaps = 11/397 (2%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N  IS +   G+   AL+ F  M    +  D   + + L+A         G+QV
Sbjct: 198 KDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQV 257

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +   G+  ++ + +ALIDLY+K   +  A  +F  +  K+ +  N L+ GY    L+
Sbjct: 258 HSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLY 317

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M   G   +  T+ ++L ACA L A + GR +H Y+ ++   + N   +++
Sbjct: 318 KEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT 377

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A QVF       +  +N+ +  W +M+  +  +G       ++  M
Sbjct: 378 SLIDMYAKCGDIEAAQQVF-------DSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 430

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             NG +PD++ FV ++SACSH+G + LG   F  M  DYKL P  EHY C++DL   +G 
Sbjct: 431 RKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGL 490

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +A K+IN M     G     +W +LL AC   G  ELG+  AQ  ++++P N G YV+
Sbjct: 491 FKEAEKMINTMEMEPDG----VIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVL 546

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W+E+ + R L+ +KG+KK  GCS IE+
Sbjct: 547 LSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEI 583



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 192/412 (46%), Gaps = 58/412 (14%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA   +TGL      +  S+L+       H   L    +    +     L +N +    
Sbjct: 21  IHAQMIKTGLHNTNYAL--SKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGH 78

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +  P+ ALK +  M   G+  ++Y     L +       + G+Q+   V K G+   +
Sbjct: 79  ALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDL 138

Query: 122 FVGSALIDLYAKLLLIHDAEL-------------------------------MFDEIPVK 150
           ++ ++LI +Y +   + DA+                                MFDEIPVK
Sbjct: 139 YIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVK 198

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V  NA +SGY E   +   LEL + M    +  D  T+  +L ACA   + E GRQVH
Sbjct: 199 DVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVH 258

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           +++       G ++ + ++LI++Y KCG +  A  +F       +G  NKDV+ W +++G
Sbjct: 259 SWINDH--GFGXNLKIVNALIDLYSKCGELETACGLF-------QGLSNKDVISWNTLIG 309

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--K 328
            Y     +KE + L++ ML +G KP++V  ++++SAC+H G + +G     W +H Y  K
Sbjct: 310 GYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIG----RW-IHVYIDK 364

Query: 329 LEPGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
              G  + S     L+D+  + G+++ A ++ + ML+R     S+S W A++
Sbjct: 365 RLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNR-----SLSSWNAMI 411


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 217/393 (55%), Gaps = 19/393 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHV-HGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  V+S F +N     AL  F  MH   G+  D     + LTA  +++  + GK++   +
Sbjct: 231 WTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKL 290

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
             +G  S+V V S+L+D+Y K   + +A  +F+ +P KN V  +ALL GYC+       +
Sbjct: 291 ITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAI 350

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           E+ R M     + D +    +L+ACAGL+A   G+++H   +R+ C  GN V ++S+LI+
Sbjct: 351 EMFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGC-FGN-VIVESALID 404

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           +YGK G +  A +V++    R       +++ W +ML    +NG  +E +  +  M+  G
Sbjct: 405 LYGKSGCIDYASRVYSKMSVR-------NMITWNAMLSALAQNGRGEEAVSFFNDMVKKG 457

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            KPD ++F+ V++AC HTG V+ G  YF  M   Y ++PG EHYSC++DLL RAG  ++A
Sbjct: 458 IKPDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEA 517

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSAC-HDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
             L    LDR    +  S+WG LL  C  +     + +  A++ +EL+P     YV+LSN
Sbjct: 518 ENL----LDRAECRNDASLWGVLLGPCAANTDASSIAERIAKRMMELEPKYHMSYVLLSN 573

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +Y       +  ++R+LM  +G+ K VG SWI+
Sbjct: 574 MYKAIGRHGDALKIRKLMVRRGVAKTVGQSWID 606



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 17/347 (4%)

Query: 42  CLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKD 101
           CL   N  +       I + C+ G    A++  +  H   I   +    S L     V  
Sbjct: 16  CLTPSNSSSAPTKQSRILELCKLGQLTDAIRILNSTHSSEISAKSNLYASLLQTCRKVFS 75

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL-LLIHDAELMFDEIPVKNSVCANALLS 160
              G Q  AHV KSG  +   VG++L+ LY KL   + +   +FD + VK+++   +++S
Sbjct: 76  FIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMS 135

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY  +K     LE+   M + GL  + FTLS+ ++AC  L     GR  H  +I      
Sbjct: 136 GYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEW 195

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            +   + S+L  MYG       A +VF+            DV+ WT++L  + +N  ++E
Sbjct: 196 NH--VISSTLAYMYGVNKEPVDARRVFDEMPE-------PDVICWTAVLSAFSKNDLYEE 246

Query: 281 VIKLYEAMLM-NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
            + L+ AM    G  PD   F TV++AC +  ++K G E    ++ +  +       S L
Sbjct: 247 ALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN-GIGSNVVVESSL 305

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           +D+  ++G + +A ++ N M  +     ++  W ALL      G+ E
Sbjct: 306 LDMYGKSGSVREARQVFNGMPRK-----NIVSWSALLGGYCQNGEHE 347



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 14/237 (5%)

Query: 37  GTLTNCLKFLN--PR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G++    +  N  PR N + ++ ++  +C+NG    A++ F  M       D Y   + L
Sbjct: 313 GSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREMEEK----DLYCFGTVL 368

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A   +   R GK++     + G   +V V SALIDLY K   I  A  ++ ++ V+N +
Sbjct: 369 KACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNMI 428

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             NA+LS   +       +     M   G+  D+ +  A+L AC      E GR   A M
Sbjct: 429 TWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVLTACGHTGLVEEGRNYFALM 488

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
             K   +       S +I++ G+ GL  +A  + + A      E   D  LW  +LG
Sbjct: 489 A-KSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRA------ECRNDASLWGVLLG 538



 Score = 38.9 bits (89), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 17/178 (9%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN + +N ++S   +NG    A+  F+ M   GI  D  +  + LTA         G
Sbjct: 422 MSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVLTACGHTGLVEEG 481

Query: 106 KQVQAHVTKS-GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           +   A + KS G        S +IDL  +  L  +AE + D    +N      +L G C 
Sbjct: 482 RNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRAECRNDASLWGVLLGPCA 541

Query: 165 AKLWAGGL------ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           A   A  +       ++ L P   + Y    LS + +A         GR   A  IRK
Sbjct: 542 ANTDASSIAERIAKRMMELEPKYHMSY--VLLSNMYKA--------IGRHGDALKIRK 589


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 239/477 (50%), Gaps = 46/477 (9%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHAH  + G+ L   +   S L+L Y          TL +         P+ +N +IS  
Sbjct: 41  VHAHVVKFGMELNAHV--ASSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGH 98

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            R+     +  +F  M   G+        + L+A    K    G QV   V  SG L  +
Sbjct: 99  RRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDL 158

Query: 122 FVGSALIDLYA-------------------------------KLLLIHDAELMFDEIPVK 150
            VG+ALID+YA                               +L  +  A  +FD +P +
Sbjct: 159 KVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPER 218

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           ++V   A++ GY +A  +   LE+ R M    +  D FT+ +++ ACA L A E G    
Sbjct: 219 DTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWAR 278

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            YM R    +  D F+ ++L++MY KCG + +AL VF       E  I +D   WT+++ 
Sbjct: 279 IYMSRHGIKM--DTFVGNALVDMYSKCGSIQQALGVFK------EMYI-RDKFTWTAVIL 329

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
               NG+ +E I ++  ML     PDEV F+ V++AC+H G V  G ++F  M   Y + 
Sbjct: 330 GLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIA 389

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
           P   H+ CL+DLL RAG+L +A + I  M  R + +    +WG LL+AC   G  E+G+L
Sbjct: 390 PNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSA----IWGTLLAACRVHGNSEIGQL 445

Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           AA+  LELD  N  +Y++LSNLYAK   W+++ +LR+++ EKG+KK+ GCS IE+ G
Sbjct: 446 AAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNG 502



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 152/353 (43%), Gaps = 54/353 (15%)

Query: 71  LKTFSFMHVHGIFLDTYALCSSLTASTSVKD-ARFGKQVQAHVTKSGWLSSVFVGSALID 129
           L+ +  M   G   D Y     L A T+  +    G  V AHV K G   +  V S+L+ 
Sbjct: 3   LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVL 62

Query: 130 LYAKLLLIHDAELMFDEIPVK---NSVCANALLSGYCEAKLWA----GGLELVRLMPALG 182
           +YA       A  + D  P +     V  NAL+SG+  ++ +       +++VR     G
Sbjct: 63  MYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVR----TG 118

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +     T   +L AC        G QVH  ++     +  D+ + ++LI+MY +C  +  
Sbjct: 119 VVPTPVTYITVLSACGKDKYIWLGMQVHKCVV--ASGVLPDLKVGNALIDMYAECSEMDA 176

Query: 243 ALQVFN-------------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYF 278
           A ++F              ++G    G+++           +D V WT+M+  Y + G F
Sbjct: 177 AWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQF 236

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           +E ++++  M  +  + DE   V+V++AC+  G ++ G E+    +  + ++      + 
Sbjct: 237 REALEMFREMQFSKVRADEFTMVSVVTACAQLGALETG-EWARIYMSRHGIKMDTFVGNA 295

Query: 339 LVDLLCRAGELDKAWKLINEMLDR---------------GHGSSSVSMWGALL 376
           LVD+  + G + +A  +  EM  R               GHG  +++M+  +L
Sbjct: 296 LVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRML 348


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 238/443 (53%), Gaps = 51/443 (11%)

Query: 39  LTNCLKFLN-PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTAS 96
           L +C+  L   R  + +N +IS + RN     A   F  M +  GI  D++ L S LTA 
Sbjct: 385 LFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTAC 444

Query: 97  TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
                 R GK++ A     G  S  FVG AL+++Y+K   +  A++ FDE+  K+    N
Sbjct: 445 ADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWN 504

Query: 157 ALLSGYCEA-----------KLWAGG------------------------LELVRLMPAL 181
           AL+SGY  +           K+   G                        ++L   M   
Sbjct: 505 ALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQIS 564

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            L  D +T+  +L AC+ L+  E G+Q HA+ I+  C    DV + ++L++MY KCG   
Sbjct: 565 KLRPDIYTVGIILPACSRLATLERGKQAHAHSIK--CGYDTDVHIGAALVDMYAKCG--- 619

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            +L+   LA  R+    N ++V   +ML     +G+ +E I L++ ML  G  PD V F+
Sbjct: 620 -SLKYAQLAYDRIS---NPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFL 675

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           +V+S+C H G V+ G E+F+ M + Y ++P  +HY+ +VDLL R+G+L +A++LI +M  
Sbjct: 676 SVLSSCVHVGSVETGCEFFDLMGY-YNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPV 734

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
                 SV +WGALL  C   G  ELG++AA++ +EL+P+N G YV+L+NL+A    W +
Sbjct: 735 E---CDSV-LWGALLGGCVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYARRWTD 790

Query: 422 IGQLRELMKEKGLKKDVGCSWIE 444
           + ++R +MK++G+ K  GCSWIE
Sbjct: 791 LARVRGMMKDRGMHKSPGCSWIE 813



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 40/307 (13%)

Query: 83  FLDTYALCSSLTAST--SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
            LD   L +S  AS   S K  + GKQV AH  K+G+ +  F+ + L+ +YA+  L+ DA
Sbjct: 54  LLDNKPLNTSKYASVLDSCKCPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDA 113

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
           + +F+ +P++N     A+LS Y +  L+     L +++   G++ D F    + +AC+GL
Sbjct: 114 DFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGL 173

Query: 201 SAAEFGRQVHAYMI--RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            + E GRQ+H  +I  R C N    +++ ++LI+MYGKCG +  A +V      R     
Sbjct: 174 GSVELGRQLHGLVIKFRFCLN----IYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTW 229

Query: 259 NK-----------------------------DVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           N                              +VV W++++G + +NGY +E I++   M 
Sbjct: 230 NSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQ 289

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPEHYSCLVDLLCRAGE 348
           + G  P+      V+ AC+   ++ LG +   ++  HD+     P   + LVD+  R G+
Sbjct: 290 VEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFI--SNPVVVNALVDVYRRCGD 347

Query: 349 LDKAWKL 355
           +  A K+
Sbjct: 348 MGGAAKI 354



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/476 (22%), Positives = 203/476 (42%), Gaps = 87/476 (18%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHAH  +TG      I   ++L+  Y  C   K+   L   +     RN   +  ++S 
Sbjct: 80  QVHAHTIKTGFDADGFI--DTKLLQMYARCGLLKDADFLFETMPM---RNLHSWKAILSV 134

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           +  +G    A   F  +   G+ LD +       A + +     G+Q+   V K  +  +
Sbjct: 135 YLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLN 194

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV--------CA----------------- 155
           ++V +ALID+Y K   + DA+ +  ++P ++SV        CA                 
Sbjct: 195 IYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKS 254

Query: 156 -----------NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
                      +A++ G+ +       +E++  M   GL  +  TL+ +L ACA L   +
Sbjct: 255 LDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLD 314

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF-------------NLAG 251
            G+Q+H Y+ R   +  ++  + ++L+++Y +CG +  A ++F              + G
Sbjct: 315 LGKQLHGYITRH--DFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVG 372

Query: 252 HRLEGEINK--------DV-------VLWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKP 295
           +   G+++K        DV       + W S++  Y RN  F E   +++ MLM  G +P
Sbjct: 373 YCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEP 432

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLLCRAGELDK 351
           D     +V++AC+ T  ++ G E     +H   +  G +  +     LV++  +  +L  
Sbjct: 433 DSFTLGSVLTACADTISLRQGKE-----IHAQAIVKGLQSDTFVGGALVEMYSKCQDLTA 487

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           A    +E++++      V  W AL+S      + E  +   +K ++ D ++  IY 
Sbjct: 488 AQVAFDEVMEK-----DVPTWNALISGYTRSNQIERIQYLLEK-MKGDGYHPNIYT 537


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 215/397 (54%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +NV+I+ +  N      L+ F  M   G         + L+ + S+ D   GKQ+
Sbjct: 300 RDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQI 359

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A +   G  S   +G+ALID+Y+K  ++  A+  F     K+++   AL++GY +    
Sbjct: 360 HAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQH 419

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M   GL  D  T S++++A + L+    GRQ+H+Y+IR      + VF  S
Sbjct: 420 EEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS--GYKSSVFSGS 477

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            L++MY KCG + +AL+ F+    R       + + W +++  Y   G  K  IK++E M
Sbjct: 478 VLVDMYAKCGCLDEALRTFDEMPER-------NSISWNAVISAYAHYGEAKNAIKMFEGM 530

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  G  PD V F++V++ACSH G     ++YF  M H Y + P  EHY+C++D L R G 
Sbjct: 531 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGC 590

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +  K++ EM  +    +   +W ++L +C   G  EL ++AA K   ++P +   YV+
Sbjct: 591 FSQVQKMLVEMPFK----ADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVI 646

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA+   W++   ++++M+++G++K+ G SW+E+
Sbjct: 647 LSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEI 683



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 170/337 (50%), Gaps = 23/337 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ ++ + +N ++    + G    AL+ F+ M   GI    +   S LT +  +     G
Sbjct: 196 MHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLG 255

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            QV A V +S  + +VFV ++L+D Y+K   + D   +FDE+P +++V  N +++ Y   
Sbjct: 256 HQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWN 315

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +  A  L L R M  LG D      + +L     L     G+Q+HA ++     L ++  
Sbjct: 316 QCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV--LLGLASEDL 373

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI+MY KCG++  A   F+   +R E    K  + WT+++  Y +NG  +E ++L+
Sbjct: 374 LGNALIDMYSKCGMLDAAKSNFS---NRSE----KSAISWTALITGYVQNGQHEEALQLF 426

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
             M   G +PD   F ++I A S    + LG +     +H Y +  G +      S LVD
Sbjct: 427 SDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQ-----LHSYLIRSGYKSSVFSGSVLVD 481

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +  + G LD+A +  +EM +R    +S+S W A++SA
Sbjct: 482 MYAKCGCLDEALRTFDEMPER----NSIS-WNAVISA 513



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 146/340 (42%), Gaps = 24/340 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN   + +++      G    AL  F  M   G+  D   + + L        +     +
Sbjct: 103 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS-----L 157

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G  + VFV + L+D Y K  L+  A  +F E+  K++V  NA++ G  +  L 
Sbjct: 158 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 217

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M   G+   HFT S++L   AG++    G QVHA ++R    L  +VF+ +
Sbjct: 218 TQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL--NVFVNN 275

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++ Y KC  +    ++F+    R       D V +  ++  Y  N     V++L+  M
Sbjct: 276 SLLDFYSKCDCLDDMRRLFDEMPER-------DNVSYNVIIAAYAWNQCAATVLRLFREM 328

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRA 346
              G     + + T++S       V +G +    +V    L    E    + L+D+  + 
Sbjct: 329 QKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV---LLGLASEDLLGNALIDMYSKC 385

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           G LD A    +   ++    S++S W AL++     G+ E
Sbjct: 386 GMLDAAKSNFSNRSEK----SAIS-WTALITGYVQNGQHE 420



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 25/157 (15%)

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           ++F  + ++  Y   G +  A  +F  + HR       +   WT M+  +   G   + +
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHR-------NATTWTIMMRAHAAAGRTSDAL 125

Query: 283 KLYEAMLMNGTKPDEVAFVTVIS--ACS----HTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
            L+ AML  G  PD V   TV++   C+    H   +K G++   ++             
Sbjct: 126 SLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVC------------ 173

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + L+D  C+ G L  A ++  EM D+   + +  M G
Sbjct: 174 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMG 210


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/414 (32%), Positives = 230/414 (55%), Gaps = 35/414 (8%)

Query: 54  FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +N +IS + RNG    AL  F   + V G+  +T  + S + A    +     + +  + 
Sbjct: 367 WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYA 426

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
            K G+    +V +AL+D+Y+++  +  +E +FD + V++ V  N +++GY  +  ++  L
Sbjct: 427 VKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNAL 486

Query: 173 ELVRLMPAL---------------GLDY--DHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
            L+  M  +               G  Y  +  TL  +L  CA L+A   G+++HAY IR
Sbjct: 487 VLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIR 546

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
               L +D+ + S+L++MY KCG +  + +VFN          NK+V+ W  ++   G +
Sbjct: 547 NM--LASDITVGSALVDMYAKCGCLNLSRRVFNEMP-------NKNVITWNVLIMACGMH 597

Query: 276 GYFKEVIKLYEAMLMNG-----TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
           G  +E ++L++ M+         KP+EV F+TV +ACSH+G +  G+  F  M HD+ +E
Sbjct: 598 GKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVE 657

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
           P  +HY+C+VDLL RAG+L++A++L+N M         V  W +LL AC      ELG++
Sbjct: 658 PTSDHYACVVDLLGRAGQLEEAYELVNTMPAE---FDKVGAWSSLLGACRIHQNVELGEV 714

Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           AA+  L L+P+    YV+LSN+Y+   +W++  ++R+ M++ G+KK+ GCSWIE
Sbjct: 715 AAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE 768



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 156/313 (49%), Gaps = 21/313 (6%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW-LSSVFVGSALI 128
           A+ T+  M V G   D +A  + L A + ++D + G+Q+ A   K G+  SSV V + L+
Sbjct: 76  AISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLV 135

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
           ++Y K   I D   +FD I  ++ V  N+ ++  C  + W   LE  R M    ++   F
Sbjct: 136 NMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSF 195

Query: 189 TLSALLRACAGLSAA---EFGRQVHAYMIRKCCNLGND-VFMQSSLIEMYGKCGLVTKAL 244
           TL ++  AC+ L        G+Q+H Y +R    +G+   F  ++L+ MY K G V  + 
Sbjct: 196 TLVSVALACSNLGVMHGLRLGKQLHGYSLR----VGDQKTFTNNALMAMYAKLGRVDDSK 251

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            +F       E  +++D+V W +M+  + ++  F E +  +  M++ G + D V   +V+
Sbjct: 252 ALF-------ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVL 304

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
            ACSH  ++ +G E   +++ +  L       S LVD+ C   +++   ++ + +L R  
Sbjct: 305 PACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR-- 362

Query: 365 GSSSVSMWGALLS 377
               + +W A++S
Sbjct: 363 ---RIELWNAMIS 372



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 177/353 (50%), Gaps = 28/353 (7%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G +      +  R+ + +N  I+  CR      AL+ F  M +  + L ++ L S   A
Sbjct: 144 IGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALA 203

Query: 96  STS---VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
            ++   +   R GKQ+  +  + G     F  +AL+ +YAKL  + D++ +F+    ++ 
Sbjct: 204 CSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDM 262

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  N ++S + ++  ++  L   RLM   G++ D  T++++L AC+ L   + G+++HAY
Sbjct: 263 VSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAY 322

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLEGEINKDVVLWTSMLGV 271
           ++R   +L  + F+ S+L++MY  C  V    +VF+ + G R+E        LW +M+  
Sbjct: 323 VLRN-NDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIE--------LWNAMISG 373

Query: 272 YGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLGIEYF--EWMVHDYK 328
           Y RNG  ++ + L+  M+ + G  P+     +V+ AC H        E F  +  +H Y 
Sbjct: 374 YARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH-------CEAFSNKESIHGYA 426

Query: 329 LEPG--PEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           ++ G   + Y  + L+D+  R G++D +  + + M  R   S +  + G +LS
Sbjct: 427 VKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLS 479



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 6/152 (3%)

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
           ++    W   L    R+  F+E I  Y  M ++G +PD  AF  V+ A S    +K G +
Sbjct: 54  SRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
                V            + LV++  + G +    K+ + + DR   S     W + ++A
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVS-----WNSFIAA 168

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
                K+E   L A +A++++   +  + ++S
Sbjct: 169 LCRFEKWEQA-LEAFRAMQMENMELSSFTLVS 199


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/403 (32%), Positives = 225/403 (55%), Gaps = 14/403 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  +N + + ++I+ + + G    AL+    M    +  +     S L   T+      G
Sbjct: 209 LPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHG 268

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K+V  ++ +SG+   ++V ++LI +Y K   + +A  +F ++P ++ V   A+++GY + 
Sbjct: 269 KKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQL 328

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L R M   G+  D  T +++L +C+  +  + G+++H  ++    NL  DV+
Sbjct: 329 GFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL--DVY 386

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML-GVYGRNGYFKEVIKL 284
           +QS+L+ MY KCG +  A  VFN    R       +VV WT+++ G   ++G  +E ++ 
Sbjct: 387 LQSALVSMYAKCGSMDDASLVFNQMSER-------NVVAWTAIITGCCAQHGRCREALEY 439

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           ++ M   G KPD+V F +V+SAC+H G V+ G ++F  M  DY ++P  EHYSC VDLL 
Sbjct: 440 FDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLG 499

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG L++A  +I  M          S+WGALLSAC      E G+ AA+  L+LDP + G
Sbjct: 500 RAGHLEEAENVILSM----PFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDG 555

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            YV LS++YA    +++  ++R++M+++ + K+ G SWIEV G
Sbjct: 556 AYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDG 598



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 178/347 (51%), Gaps = 20/347 (5%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G+LT+  +  +    RN + +  +I  F      L A K +  M + G   D     S L
Sbjct: 96  GSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLL 155

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A T+ +  + G++V   + ++G      VG++L+ +YAK   I  A ++FD +P KN V
Sbjct: 156 NAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVV 215

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
               L++GY +       LEL+  M    +  +  T +++L+ C   +A E G++VH Y+
Sbjct: 216 TWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYI 275

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           I+     G ++++ +SLI MY KCG + +A ++F+   HR       DVV WT+M+  Y 
Sbjct: 276 IQS--GYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHR-------DVVTWTAMVTGYA 326

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPG 332
           + G+  E I L+  M   G KPD++ F +V+++CS    ++ G    + +VH  Y L+  
Sbjct: 327 QLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVY 386

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
            +  S LV +  + G +D A  + N+M +R     +V  W A+++ C
Sbjct: 387 LQ--SALVSMYAKCGSMDDASLVFNQMSER-----NVVAWTAIITGC 426



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 145/325 (44%), Gaps = 23/325 (7%)

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           +S  C+ G    AL   + M + G  + +      L     ++    G++V A + KSG 
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
             + ++ + L+ +YAK   + DA  +FD I  +N V   A++  +          +    
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G   D  T  +LL A       + G++VH  ++     L   V   +SL+ MY KC
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRV--GTSLVGMYAKC 196

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G ++KA  +F+    RL     K+VV WT ++  Y + G     ++L E M      P++
Sbjct: 197 GDISKARVIFD----RLP---EKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNK 249

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAW 353
           + F +++  C+    ++ G +     VH Y ++ G        + L+ + C+ G L++A 
Sbjct: 250 ITFASILQGCTTPAALEHGKK-----VHRYIIQSGYGRELWVVNSLITMYCKCGGLEEAR 304

Query: 354 KLINEMLDRGHGSSSVSMWGALLSA 378
           KL +++  R      V  W A+++ 
Sbjct: 305 KLFSDLPHR-----DVVTWTAMVTG 324


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 215/397 (54%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +NV+I+ +  N      L+ F  M   G         + L+ + S+ D   GKQ+
Sbjct: 300 RDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQI 359

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A +   G  S   +G+ALID+Y+K  ++  A+  F     K+++   AL++GY +    
Sbjct: 360 HAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQH 419

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M   GL  D  T S++++A + L+    GRQ+H+Y+IR      + VF  S
Sbjct: 420 EEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS--GYKSSVFSGS 477

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            L++MY KCG + +AL+ F+    R       + + W +++  Y   G  K  IK++E M
Sbjct: 478 VLVDMYAKCGCLDEALRTFDEMPER-------NSISWNAVISAYAHYGEAKNAIKMFEGM 530

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  G  PD V F++V++ACSH G     ++YF  M H Y + P  EHY+C++D L R G 
Sbjct: 531 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGC 590

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +  K++ EM  +    +   +W ++L +C   G  EL ++AA K   ++P +   YV+
Sbjct: 591 FSQVQKMLVEMPFK----ADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVI 646

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA+   W++   ++++M+++G++K+ G SW+E+
Sbjct: 647 LSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEI 683



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 170/337 (50%), Gaps = 23/337 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ ++ + +N ++    + G    AL+ F+ M   GI    +   S LT +  +     G
Sbjct: 196 MHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLG 255

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            QV A V +S  + +VFV ++L+D Y+K   + D   +FDE+P +++V  N +++ Y   
Sbjct: 256 HQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWN 315

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +  A  L L R M  LG D      + +L     L     G+Q+HA ++     L ++  
Sbjct: 316 QCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV--LLGLASEDL 373

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI+MY KCG++  A   F+   +R E    K  + WT+++  Y +NG  +E ++L+
Sbjct: 374 LGNALIDMYSKCGMLDAAKSNFS---NRSE----KSAISWTALITGYVQNGQHEEALQLF 426

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
             M   G +PD   F ++I A S    + LG +     +H Y +  G +      S LVD
Sbjct: 427 SDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQ-----LHSYLIRSGYKSSVFSGSVLVD 481

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +  + G LD+A +  +EM +R    +S+S W A++SA
Sbjct: 482 MYAKCGCLDEALRTFDEMPER----NSIS-WNAVISA 513



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 146/340 (42%), Gaps = 24/340 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN   + +++      G    AL  F  M   G+  D   + + L        +     +
Sbjct: 103 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS-----L 157

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G  + VFV + L+D Y K  L+  A  +F E+  K++V  NA++ G  +  L 
Sbjct: 158 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 217

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M   G+   HFT S++L   AG++    G QVHA ++R    L  +VF+ +
Sbjct: 218 TQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL--NVFVNN 275

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++ Y KC  +    ++F+    R       D V +  ++  Y  N     V++L+  M
Sbjct: 276 SLLDFYSKCDCLDDMRRLFDEMPER-------DNVSYNVIIAAYAWNQCAATVLRLFREM 328

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRA 346
              G     + + T++S       V +G +    +V    L    E    + L+D+  + 
Sbjct: 329 QKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV---LLGLASEDLLGNALIDMYSKC 385

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           G LD A    +   ++    S++S W AL++     G+ E
Sbjct: 386 GMLDAAKSNFSNRSEK----SAIS-WTALITGYVQNGQHE 420



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 25/157 (15%)

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           ++F  + ++  Y   G +  A  +F  + HR       +   WT M+  +   G   + +
Sbjct: 73  NIFSLNLILSAYSSSGDLPAAQHLFLSSPHR-------NATTWTIMMRAHAAAGRTSDAL 125

Query: 283 KLYEAMLMNGTKPDEVAFVTVIS--ACS----HTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
            L+ AML  G  PD V   TV++   C+    H   +K G++   ++             
Sbjct: 126 SLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVC------------ 173

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + L+D  C+ G L  A ++  EM D+   + +  M G
Sbjct: 174 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMG 210


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 228/431 (52%), Gaps = 44/431 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L   N + +  +I    + G    AL  F+ M    +  D + L + L    S KD   G
Sbjct: 307 LTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIG 366

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAK------------LLLIHD-------------- 139
           +Q+ AH    G  SSV V +AL+ +YAK            L+ I D              
Sbjct: 367 EQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQA 426

Query: 140 -----AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
                A   FD++P +N +  N++L+ Y +   W  GL++   M   G+  D  T S  +
Sbjct: 427 GDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSI 486

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            ACA L+    G Q+ A   +      ++V + +S++ MY +CG + +A ++F+      
Sbjct: 487 SACADLAVLILGNQILAQAEK--LGFSSNVSVANSVVTMYSRCGQIEEAQKMFS------ 538

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
              + K++V W +M+  Y +NG  ++VI+++E ML  G  PD++++V+V+S CSH+G V 
Sbjct: 539 -SIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVS 597

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G  YF  M  D+ + P  EH+ C+VDLL RAG+L++A  LIN+M  +     + ++WGA
Sbjct: 598 EGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFK----PNAAIWGA 653

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL+AC   G  +L +LA +  LELD    G Y +L+N+Y++      +  +R+LM++KG+
Sbjct: 654 LLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGV 713

Query: 435 KKDVGCSWIEV 445
           +K+ GCSWIEV
Sbjct: 714 RKNPGCSWIEV 724



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 162/360 (45%), Gaps = 32/360 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS   ++G     L TF  M   G   ++    S L+A TS+ D  +G  +
Sbjct: 209 RDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHL 268

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + +      V+ G  LID+YAK   +  A  +FD +   N+V   +L+ G  +A   
Sbjct: 269 HARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQ 328

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M  + +  D FTL+ +L  C        G Q+HA+ I +   L + V + +
Sbjct: 329 EEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITR--GLDSSVPVAN 386

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHR-------------LEGEINK-----------DVVL 264
           +L+ MY KCG V KA   F L   R               G++ K           +V+ 
Sbjct: 387 ALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVIS 446

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W SML  Y + GY++E +K+Y  ML  G K D + F T ISAC+    + LG +      
Sbjct: 447 WNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILA-QA 505

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
                       + +V +  R G++++A K+ + ++ +     ++  W A+++     G+
Sbjct: 506 EKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMK-----NLVSWNAMMAGYAQNGQ 560



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 147/331 (44%), Gaps = 53/331 (16%)

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           S+    S++     +++ A +   G  SS+F+ + L+++Y+   LI DA  +F  I   N
Sbjct: 10  SMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPN 69

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMP--------ALGLDYDHF-TLSALLRACAGLSA 202
               N ++SG+ ++       +L   MP        ++   Y H   L A ++A   L  
Sbjct: 70  VYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGY 129

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF-------------NL 249
            +   Q+H +  +   + G D  +++S+++MY KCG +  A +VF              +
Sbjct: 130 LKLALQLHGFAEK--FDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMI 187

Query: 250 AGHRLEGEINK-----------DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            G+   G + K           D V W +M+ +  ++G+  E +  +  M   G +P+ +
Sbjct: 188 YGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSM 247

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDY----KLEPGPEHYS--CLVDLLCRAGELDKA 352
            + +V+SAC+        I   EW  H +    ++EP  + Y+   L+D+  + G L+ A
Sbjct: 248 TYASVLSACT-------SIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESA 300

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
            ++ + + +  H + S   W +L+      G
Sbjct: 301 RQVFDGLTE--HNAVS---WTSLIGGVAQAG 326


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/424 (32%), Positives = 235/424 (55%), Gaps = 16/424 (3%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           LM  Y TC        L    + +  +N + +  +I+ F   G  +  LK +  M +   
Sbjct: 152 LMNMYATCSVTMEAAFLI--FRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENA 209

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
            +  Y +  ++ AS S+     GKQ+ A V K G+ S++ V ++++D Y +   + +A+ 
Sbjct: 210 DVTPYCITIAVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKR 269

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
            F E+  K+ +  N L+S   E    +  L + +   + G   + +T ++L+ ACA ++A
Sbjct: 270 YFHEMEDKDLITWNTLISE-LERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAA 328

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G+Q+H  + R+  N   +V + ++LI+MY KCG +  + +VF       E E  +++
Sbjct: 329 LNCGQQLHGRIYRRGFN--KNVELANALIDMYAKCGDIPDSERVFG------EIEERRNL 380

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V WTSM+  YG +GY  E ++L++ M+ +G +PD + F+ V+SAC H G V+ G++YF  
Sbjct: 381 VSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNV 440

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M  +Y + P  + Y+C+VDLL RAG++ +A++L+  M  +   S+    WGA+L AC   
Sbjct: 441 MESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDEST----WGAILGACKAH 496

Query: 383 GKFEL-GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCS 441
               L  +LAA+K +EL P  VG YVMLS +YA    W E  ++R++M+  G KK+ G S
Sbjct: 497 KHTGLISRLAAKKVMELKPRMVGTYVMLSYIYAAEGKWVEFARVRKMMRMMGNKKEAGMS 556

Query: 442 WIEV 445
           WIEV
Sbjct: 557 WIEV 560



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 118/260 (45%), Gaps = 24/260 (9%)

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           + + LI  Y +  L+ +A  +FDE+P ++ V   A+++GY  +   +   E    M   G
Sbjct: 47  LATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQG 106

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
              + FTLS++L++C  +    +G  VH  +++    +   +++ ++L+ MY  C +  +
Sbjct: 107 RSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVK--LGMEGSLYVDNALMNMYATCSVTME 164

Query: 243 -ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A  +F       + ++  DV  WT+++  +   G     +K+Y+ ML+           
Sbjct: 165 AAFLIFR------DIKVKNDVT-WTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCIT 217

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLIN 357
             + A +    V  G +     +H   ++ G +      + ++D  CR G L +A +  +
Sbjct: 218 IAVRASASIDSVTTGKQ-----IHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFH 272

Query: 358 EMLDRGHGSSSVSMWGALLS 377
           EM D+      +  W  L+S
Sbjct: 273 EMEDK-----DLITWNTLIS 287


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/410 (32%), Positives = 225/410 (54%), Gaps = 12/410 (2%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           LG      + +  R+ + +N+VI+ + +N +   A++ F  +   GI  +       L  
Sbjct: 258 LGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNV 317

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
            TS+     GK +   V ++G+   V V +AL+ LY +      A  +F ++  K+ +  
Sbjct: 318 YTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITW 377

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
             +   Y +       L+L + M   G      TL A+L  CA L+A + GRQ+H+++I 
Sbjct: 378 TVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIE 437

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
               +  ++ ++++LI MYGKCG + +A  VF       E    +D+++W SMLG Y ++
Sbjct: 438 NGFRM--EMVVETALINMYGKCGKMAEARSVF-------EKMAKRDILVWNSMLGAYAQH 488

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           GY+ E ++L+  M ++G K D V+FV+V+SA SH+G V  G +YF  M+ D+ + P PE 
Sbjct: 489 GYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPEL 548

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
           Y C+VDLL RAG + +A  ++ ++   G     + +W  LL AC    K +  K AA++ 
Sbjct: 549 YGCVVDLLGRAGRIQEAVDIVLKL--SGCLPDGI-LWMTLLGACRTHNKTDQAKAAAEQV 605

Query: 396 LELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LE DP + G YV+LSN+YA    WD + ++R+LM+ +G+KK+ G S IE+
Sbjct: 606 LERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEI 655



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 157/355 (44%), Gaps = 16/355 (4%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           DT    + L   +S K+   G++V  HV   G+  +  V   LI +YA+   + +A+ +F
Sbjct: 4   DTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 63

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           + +  K+      ++  YC+   +   L +   M    +     T  A+L ACA   + +
Sbjct: 64  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 123

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G ++H  ++++      DVF+ ++LI MY KCG V  A   F    HR       DVV 
Sbjct: 124 DGMEIHGQILQQ--GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-------DVVS 174

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           WT+M+    ++  F     LY  M ++G  P+++   TV +A      +  G ++   +V
Sbjct: 175 WTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG-KFIYSLV 233

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
               +E      +  +++   AG L  A +L  +M+DR      V  W  +++       
Sbjct: 234 SSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDR-----DVVTWNIVITFYVQNEN 288

Query: 385 F-ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           F E  +L  +   +    N   +V++ N+Y       +   + EL+KE G  +DV
Sbjct: 289 FGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDV 343



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 149/342 (43%), Gaps = 23/342 (6%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
              + L  ++   +  +I  +C+ G    AL  F  M    +        + L A  S +
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
             + G ++   + + G+   VFVG+ALI++Y K   +  A   F  +  ++ V   A+++
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
              +   +A    L R M   G+  +  TL  +  A         G+ +++ +  +   +
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRV--M 238

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            +DV + +S + M+G  GL+  A ++F       E  +++DVV W  ++  Y +N  F E
Sbjct: 239 ESDVRVMNSAMNMFGNAGLLGDARRLF-------EDMVDRDVVTWNIVITFYVQNENFGE 291

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----Y 336
            ++L+  +  +G K +++ FV +++  +    +  G      ++H+   E G +      
Sbjct: 292 AVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGK-----VIHELVKEAGYDRDVVVA 346

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + L+ L  R     +AWK+  +M     GS  V  W  +  A
Sbjct: 347 TALMSLYGRCEAPGQAWKIFVDM-----GSKDVITWTVMCVA 383


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/400 (33%), Positives = 217/400 (54%), Gaps = 16/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           R+ + +N +I+ + + G    A++ F  M    G   D  +L S L A   + D   G+ 
Sbjct: 180 RDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRW 239

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V+  V + G   + ++GSALI +YAK   +  A  +FD +  ++ +  NA++SGY +  +
Sbjct: 240 VEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGM 299

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               + L   M    +  +  TL+A+L ACA + A + G+Q+  Y  ++     +D+F+ 
Sbjct: 300 ADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQR--GFQHDIFVA 357

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+MY KCG +  A +VF     + E         W +M+     +G  KE + L++ 
Sbjct: 358 TALIDMYAKCGSLASAQRVFKEMPQKNEAS-------WNAMISALASHGKAKEALSLFQC 410

Query: 288 MLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           M   G   +P+++ FV ++SAC H G V  G   F+ M   + L P  EHYSC+VDLL R
Sbjct: 411 MSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLAR 470

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L +AW LI +M ++      V++ GALL AC      ++G+   +  LE+DP N G 
Sbjct: 471 AGHLYEAWDLIEKMPEK---PDKVTL-GALLGACRSKKNVDIGERVIRMILEVDPSNSGN 526

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y++ S +YA   MW++  ++R LM++KG+ K  GCSWIEV
Sbjct: 527 YIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEV 566



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 133/264 (50%), Gaps = 24/264 (9%)

Query: 126 ALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLD 184
           +LI +Y++   +  A  +FDEIP ++ V  N++++GY +A      +E+   M    G +
Sbjct: 156 SLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFE 215

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D  +L ++L AC  L   E GR V  +++ +   L +  ++ S+LI MY KCG +  A 
Sbjct: 216 PDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNS--YIGSALISMYAKCGDLGSAR 273

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           ++F       +G   +DV+ W +++  Y +NG   E I L+ AM  +    +++    V+
Sbjct: 274 RIF-------DGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVL 326

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEML 360
           SAC+  G + LG +     + +Y  + G +H     + L+D+  + G L  A ++  EM 
Sbjct: 327 SACATIGALDLGKQ-----IDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMP 381

Query: 361 DRGHGSSSVSMWGALLSACHDCGK 384
            +   S     W A++SA    GK
Sbjct: 382 QKNEAS-----WNAMISALASHGK 400



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 124/299 (41%), Gaps = 49/299 (16%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S L+  Y  C    +LG+       +  R+ + +N VIS + +NG    A+  F  M   
Sbjct: 257 SALISMYAKC---GDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKED 313

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
            +  +   L + L+A  ++     GKQ+  + ++ G+   +FV +ALID+YAK   +  A
Sbjct: 314 CVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASA 373

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP--ALGLDYDHFTLSALLRACA 198
           + +F E+P KN    NA++S           L L + M     G   +  T   LL AC 
Sbjct: 374 QRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSAC- 432

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVF-MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
                     VHA ++    N G  +F M S+L       GLV K               
Sbjct: 433 ----------VHAGLV----NEGYRLFDMMSTLF------GLVPK--------------- 457

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               +  ++ M+ +  R G+  E   L E M     KPD+V    ++ AC     V +G
Sbjct: 458 ----IEHYSCMVDLLARAGHLYEAWDLIEKM---PEKPDKVTLGALLGACRSKKNVDIG 509



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 136/313 (43%), Gaps = 50/313 (15%)

Query: 140 AELMFDEI-PVKNSVCANALLSGYCEA-KLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
           A L+F  I P  N    N ++         +   L L   M +L L  ++FT      +C
Sbjct: 67  ASLLFSHIAPHPNDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSC 126

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A L+     R  H+ + +    L +D     SLI MY +CG V  A +VF+    R    
Sbjct: 127 ANLAVLSPARAAHSLVFK--LALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRR---- 180

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAM-LMNGTKPDEVAFVTVISACSHTGQVKLG 316
              D+V W SM+  Y + G  +E ++++  M   +G +PDE++ V+V+ AC   G ++LG
Sbjct: 181 ---DLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELG 237

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR-------------- 362
             + E  V +  +       S L+ +  + G+L  A ++ + M  R              
Sbjct: 238 -RWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQ 296

Query: 363 -GHGSSSVSMWGAL---------------LSACHDCGKFELGK----LAAQKALELDPHN 402
            G    ++S++ A+               LSAC   G  +LGK     A+Q+  +   H+
Sbjct: 297 NGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQ---HD 353

Query: 403 VGIYVMLSNLYAK 415
           + +   L ++YAK
Sbjct: 354 IFVATALIDMYAK 366


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/397 (32%), Positives = 218/397 (54%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I    ++G    AL  +  M   G+  +     S L A +S     +G+++
Sbjct: 392 KDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRI 451

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V ++G  +   VG+ L+++Y+    + DA  +FD +  ++ V  NA++ GY    L 
Sbjct: 452 HQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLG 511

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   +   GL  D  T   +L ACA   + E+ R++H  ++RK     +D  + +
Sbjct: 512 KEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHT-LVRKG-GFFSDTSVGN 569

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+  Y KCG  + A  VF       E    ++V+ W +++G   ++G  ++ ++L+E M
Sbjct: 570 ALVSTYAKCGSFSDASIVF-------EKMTKRNVISWNAIIGGSAQHGRGQDALQLFERM 622

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            M G KPD V FV+++SACSH G ++ G  YF  M  D+ + P  EHY C+VDLL RAG+
Sbjct: 623 KMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQ 682

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD+A  LI  M  +    ++  +WGALL AC   G   + + AA+ +L+LD  N  +YV 
Sbjct: 683 LDEAEALIKTMPFQ----ANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVA 738

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LS++YA   MWD   +LR+LM+++G+ K+ G SWI+V
Sbjct: 739 LSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQV 775



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 189/405 (46%), Gaps = 52/405 (12%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G+  +C +       R+ + +N +I      G    A + ++ M   G+  +       L
Sbjct: 276 GSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILL 335

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A  +     +GK++ + V K+G+ S + V +ALI +Y++   I DA L+FD++  K+ +
Sbjct: 336 NACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVI 395

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
              A++ G  ++   A  L + + M   G++ +  T +++L AC+  +A E+GR++H  +
Sbjct: 396 SWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQV 455

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           +     L  D  + ++L+ MY  CG V  A QVF+    R+   I +D+V + +M+G Y 
Sbjct: 456 VE--AGLATDAHVGNTLVNMYSMCGSVKDARQVFD----RM---IQRDIVAYNAMIGGYA 506

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +   KE +KL++ +   G KPD+V ++ +++AC+++G         EW           
Sbjct: 507 AHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS-------LEWA---------- 549

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
                               + I+ ++ +G   S  S+  AL+S    CG F    +  +
Sbjct: 550 --------------------REIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFE 589

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           K   +   NV  +  +    A+     +  QL E MK +G+K D+
Sbjct: 590 K---MTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDI 631



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 182/395 (46%), Gaps = 18/395 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + + + I  +   G    A + F  M   G+  +     S L A +S    ++G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V + +  +G  S   VG+AL+ +YAK     D   +F+++  ++ +  N ++ G  E 
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             W    E+   M   G+  +  T   LL AC   +A  +G+++H+ + +      +D+ 
Sbjct: 307 GYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK--AGFTSDIG 364

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q++LI MY +CG +  A  VF+         + KDV+ WT+M+G   ++G+  E + +Y
Sbjct: 365 VQNALISMYSRCGSIKDARLVFDKM-------VRKDVISWTAMIGGLAKSGFGAEALTVY 417

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + M   G +P+ V + ++++ACS    ++ G    + +V +  L       + LV++   
Sbjct: 418 QEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV-EAGLATDAHVGNTLVNMYSM 476

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNV 403
            G +  A ++ + M+ R      +  + A++   A H+ GK  L      +   L P  V
Sbjct: 477 CGSVKDARQVFDRMIQR-----DIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV 531

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
             Y+ + N  A     +   ++  L+++ G   D 
Sbjct: 532 -TYINMLNACANSGSLEWAREIHTLVRKGGFFSDT 565



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 160/341 (46%), Gaps = 27/341 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R    +N ++  + + G    ALK    M  HG+  D   + S L++  S     +G+++
Sbjct: 89  RTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREI 148

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                ++G L  V V + ++++YAK   I +A  +FD++  K+ V     + GY +    
Sbjct: 149 HFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRS 208

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFM 226
               E+ + M   G+  +  T  ++L A +  +A ++G+ VH+ ++    N G  +D  +
Sbjct: 209 ETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRIL----NAGHESDTAV 264

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L++MY KCG      QVF       E  +N+D++ W +M+G     GY++E  ++Y 
Sbjct: 265 GTALVKMYAKCGSYKDCRQVF-------EKLVNRDLIAWNTMIGGLAEGGYWEEASEVYN 317

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDL 342
            M   G  P+++ +V +++AC ++  +  G E     +H    + G        + L+ +
Sbjct: 318 QMQREGVMPNKITYVILLNACVNSAALHWGKE-----IHSRVAKAGFTSDIGVQNALISM 372

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
             R G +  A  + ++M+ +      V  W A++      G
Sbjct: 373 YSRCGSIKDARLVFDKMVRK-----DVISWTAMIGGLAKSG 408



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 151/323 (46%), Gaps = 25/323 (7%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           A+    ++   G  +++      L     VKD   G+QV  H+ +   +   +  +ALI+
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 130 LYAKLLLIHDAELMFDEIP-VKNSVCA-NALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
           +Y +   I +A  ++ ++  ++ +V + NA++ GY +       L+L+R M   GL  D 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
            T+ + L +C    A E+GR++H   ++    L  DV + + ++ MY KCG + +A +VF
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQ--AGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
           +    ++E    K VV WT  +G Y   G  +   ++++ M   G  P+ + +++V++A 
Sbjct: 185 D----KME---KKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAF 237

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRG 363
           S    +K G       VH   L  G E      + LV +  + G      ++  ++++R 
Sbjct: 238 SSPAALKWGK-----AVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNR- 291

Query: 364 HGSSSVSMWGALLSACHDCGKFE 386
                +  W  ++    + G +E
Sbjct: 292 ----DLIAWNTMIGGLAEGGYWE 310



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 108/222 (48%), Gaps = 23/222 (10%)

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
           G +++V+ +   G   +      +L+ C  +     GRQVH ++I+       D +  ++
Sbjct: 6   GAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQH--RTVPDQYTVNA 63

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           LI MY +CG + +A QV+    +     + + V  W +M+  Y + GY ++ +KL   M 
Sbjct: 64  LINMYIQCGSIEEARQVWKKLSY-----MERTVHSWNAMVVGYIQYGYIEKALKLLRQMQ 118

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWM----VHDYKLEPGPEHYSCLVDLLC 344
            +G  PD    ++ +S+C   G ++ G E +F+ M    + D K+       +C++++  
Sbjct: 119 QHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVA------NCILNMYA 172

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           + G +++A ++ ++M  +     SV  W   +    DCG+ E
Sbjct: 173 KCGSIEEAREVFDKMEKK-----SVVSWTITIGGYADCGRSE 209


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 236/444 (53%), Gaps = 47/444 (10%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G+L +  +F +    RN + +N +I+ + + G+   A   F  M   G+  D + L S L
Sbjct: 159 GSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLL 218

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK---LLLIHD----------- 139
            A ++  +  FGK V +H+   G    + + +AL+D+Y K   LL+ H            
Sbjct: 219 FACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAV 278

Query: 140 -----------------AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
                            A   F++IP K+ +  NA++S Y +   +   L+L   M  LG
Sbjct: 279 SWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLG 338

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           L  D FTL+A+L AC  L     G+ +H  +     N G  +F  +SL++MY +CG V  
Sbjct: 339 LAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALF--NSLLDMYARCGQVDT 396

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A+ +F+          +K+V+ W +++G    +G  ++ +  + +M+ +   PDE+ FV 
Sbjct: 397 AISLFSEMP-------SKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVA 449

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           ++SAC+H G ++ G  YF+ M H Y ++PG EHY+C+VDLL R G+L KA  LI +M  R
Sbjct: 450 LLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMR 509

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422
                 V +WGALL AC   G  ++GK   ++ LEL+  + G++V++SN+  +   W+++
Sbjct: 510 ----PDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDM 565

Query: 423 GQLRELMKEKGLKKDVGCSWIEVT 446
            +LR+LM+E G+KK++G S IE  
Sbjct: 566 KRLRKLMREWGMKKNMGVSSIETN 589



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 191/448 (42%), Gaps = 68/448 (15%)

Query: 49  RNPLP----FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           R P P    +N +I  +C +  P  AL     M   GI  + + L   L A   V+    
Sbjct: 69  RIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEH 128

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
                  V K G++  VFVG+AL+  YA    + D+   FDE+  +N V  N++++GY +
Sbjct: 129 VMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQ 188

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           A        L   M   GL  D FTL +LL AC+     EFG+ VH++++ + C +  D+
Sbjct: 189 AGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRI--DL 246

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNL------------------------AGHRLEGEINK 260
            + ++L++MYGKCG +  A   F++                        A    E    K
Sbjct: 247 ILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEK 306

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
            ++ W +M+  Y + G F E + LY  M + G  PDE     V+SAC   G +  G +  
Sbjct: 307 SIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASG-KMI 365

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG-------------HGSS 367
              + D    PG   ++ L+D+  R G++D A  L +EM  +              HG +
Sbjct: 366 HDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRA 425

Query: 368 SVSM-----------------WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
             ++                 + ALLSAC+  G  E G+   Q           +Y +  
Sbjct: 426 QDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRH-------VYNVKP 478

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDV 438
            +    CM D +G+  +L K   L KD+
Sbjct: 479 GVEHYACMVDLLGRGGQLAKAVDLIKDM 506



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 19/204 (9%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD IP  +    N+L+  YC +      L L+R M   G+  + FTL  LL+ACA 
Sbjct: 63  ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           + A E     H  +++        VF+ ++L+  Y   G +  + + F       +  ++
Sbjct: 123 VQAWEHVMVTHGVVVK--LGFVGQVFVGNALLHSYASAGSLGDSRRFF-------DEMVD 173

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           ++VV W SM+  Y + G  +E   L+E M   G   DE   V+++ ACS  G ++ G   
Sbjct: 174 RNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGK-- 231

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLL 343
              +VH + L  G     C +DL+
Sbjct: 232 ---LVHSHLLVRG-----CRIDLI 247


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/480 (30%), Positives = 232/480 (48%), Gaps = 49/480 (10%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHAH    GL    L+   S+++  Y +     ++ +  +    +   + L FN +I  
Sbjct: 91  QVHAHMLLRGLQPTALV--GSKMVAFYAS---SGDIDSSVSVFNGIGEPSSLLFNSMIRA 145

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + R G     + T+  MH  G   D +     L +S  +     GK V   + + G    
Sbjct: 146 YARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD 205

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP- 179
           ++V ++LI LY K   I+DA  +FD + +++    NALL+GY ++      L +   MP 
Sbjct: 206 LYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPW 265

Query: 180 ---------------------AL-----------GLDYDHFTLSALLRACAGLSAAEFGR 207
                                AL           G+  +  T+ ++L ACA LS  E GR
Sbjct: 266 RNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGR 325

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q+H    R   N    V +  +L  MY KCG +  A   F+           K+++ W +
Sbjct: 326 QIHELACRMGLNSNASVLI--ALTAMYAKCGSLVDARNCFDKLNRN-----EKNLIAWNT 378

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           M+  Y   G+  + +  +  M+  G +PD++ F  ++S CSH+G V +G++YF  M   Y
Sbjct: 379 MITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTY 438

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
            + P  EHY+C+ DLL RAG L +A KL+ EM       +  S+WG+LL+AC      E+
Sbjct: 439 SINPRVEHYACVADLLGRAGRLAEASKLVGEM----PMPAGPSIWGSLLAACRKHRNLEM 494

Query: 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            + AA+K   L+P N G YV+LSN+YA+   W E+ +LR ++K +G KK  GCSWIE+ G
Sbjct: 495 AETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEING 554



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 28/245 (11%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           + G QV AH+   G   +  VGS ++  YA    I  +  +F+ I   +S+  N+++  Y
Sbjct: 87  KLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAY 146

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                    +     M + G   D+FT   +L++   L +   G+ VH  ++R    L  
Sbjct: 147 ARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILR--IGLQF 204

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEIN---------- 259
           D+++ +SLI +YGKCG +  A +VF+             LAG+   G I+          
Sbjct: 205 DLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMP 264

Query: 260 -KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM--NGTKPDEVAFVTVISACSHTGQVKLG 316
            +++V WT+M+  Y ++G  ++ + L++ M+   +G +P+ V  ++V+ AC+    ++ G
Sbjct: 265 WRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERG 324

Query: 317 IEYFE 321
            +  E
Sbjct: 325 RQIHE 329



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 37/207 (17%)

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
            + + + +   GL+  + G QVHA+M+ +   L     + S ++  Y   G +  ++ VF
Sbjct: 71  LSYAPVFQFLTGLNMLKLGHQVHAHMLLR--GLQPTALVGSKMVAFYASSGDIDSSVSVF 128

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA- 306
           N  G           +L+ SM+  Y R G+ +  +  Y +M   G   D   F  V+ + 
Sbjct: 129 NGIGE-------PSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSS 181

Query: 307 ----------CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
                     C H   +++G+++  ++             + L+ L  + GE++ A K+ 
Sbjct: 182 VELLSVWMGKCVHGLILRIGLQFDLYVA------------TSLIILYGKCGEINDAGKVF 229

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCG 383
           + M  R      VS W ALL+     G
Sbjct: 230 DNMTIR-----DVSSWNALLAGYTKSG 251


>gi|242096754|ref|XP_002438867.1| hypothetical protein SORBIDRAFT_10g027503 [Sorghum bicolor]
 gi|241917090|gb|EER90234.1| hypothetical protein SORBIDRAFT_10g027503 [Sorghum bicolor]
          Length = 610

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/407 (34%), Positives = 221/407 (54%), Gaps = 18/407 (4%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALC 90
           H    G      + +   + + +  +IS F RN     AL+ F  M    G++ D     
Sbjct: 191 HSGAPGDARRAFEEMRAPDGICYTSLISAFVRNDWFDEALRWFQAMLATDGVYPDGCTFG 250

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S +TA  ++K AR G++  A V   G   +V V S+ +D+YAK  ++ DA+ +FD + V+
Sbjct: 251 SMMTALGNLKRARQGREAHAQVLTRGLCGNVIVESSTLDMYAKCGMMVDAQKVFDRMKVR 310

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N+V   ALL GYC++      L L R M     D D ++L  LLR+CAGLSA + G+++H
Sbjct: 311 NAVSWCALLGGYCQSGKHEMVLSLFRQM--YTEDDDWYSLGTLLRSCAGLSAVKLGKEIH 368

Query: 211 AYMIR-KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
              +R + C    DV ++S+L+++Y KCG V  A +VF  +  R       +++ W +M+
Sbjct: 369 CRFMRMRGCG---DVIVESALVDLYAKCGAVEYAYRVFRRSSVR-------NMITWNAMI 418

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
               +NG+ +  I L++ M+    KPD V+F+ V+ ACSHTG V+ G  YF  M  DY +
Sbjct: 419 CGCAQNGHGERAISLFDEMVREEVKPDYVSFIGVLFACSHTGMVEEGRNYFNSMSKDYGI 478

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
            PG EHY+C+VDLL R   L++A  L+N+   R       S+W A+L AC      ++  
Sbjct: 479 PPGIEHYNCIVDLLSRVELLEEAEDLVNKSQFR----DDSSLWAAILGACATHTNPDVAV 534

Query: 390 LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
             A+K +EL+P     YV+L N+Y     W++  ++R LMK + + K
Sbjct: 535 RVAKKMMELEPQYHLSYVLLENVYRTIGRWEDAVEVRRLMKSRKILK 581



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 156/353 (44%), Gaps = 34/353 (9%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLD------TYALCSSLTASTSV 99
           L  R+ +  + V++ F R G P  AL     M   G   D       +AL +S  A   +
Sbjct: 98  LPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMAAGGYGADDDVAPSAHALSASAKACAVL 157

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           +D R G  V       G+     V SAL+D+Y       DA   F+E+   + +C  +L+
Sbjct: 158 RDLRAGACVHGTTVVRGYADDGVVLSALVDMYGHSGAPGDARRAFEEMRAPDGICYTSLI 217

Query: 160 SGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           S +     +   L   + M A  G+  D  T  +++ A   L  A  GR+ HA ++ +  
Sbjct: 218 SAFVRNDWFDEALRWFQAMLATDGVYPDGCTFGSMMTALGNLKRARQGREAHAQVLTR-- 275

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
            L  +V ++SS ++MY KCG++  A +VF+    R       + V W ++LG Y ++G  
Sbjct: 276 GLCGNVIVESSTLDMYAKCGMMVDAQKVFDRMKVR-------NAVSWCALLGGYCQSGKH 328

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE---YFEWM--VHDYKLEPGP 333
           + V+ L+  M       D  +  T++ +C+    VKLG E    F  M    D  +E   
Sbjct: 329 EMVLSLFRQMYTEDD--DWYSLGTLLRSCAGLSAVKLGKEIHCRFMRMRGCGDVIVE--- 383

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
              S LVDL  + G ++ A+++      R     ++  W A++  C   G  E
Sbjct: 384 ---SALVDLYAKCGAVEYAYRVF-----RRSSVRNMITWNAMICGCAQNGHGE 428



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 127/279 (45%), Gaps = 33/279 (11%)

Query: 122 FVGSALIDLYAKLL--LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           ++ +AL+  Y +L   L H A   FD++P ++ V  +++L+ +  A L    L  +R M 
Sbjct: 72  YLANALLAFYVRLPDHLPH-ALRAFDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMA 130

Query: 180 ALGLDYDH------FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           A G   D         LSA  +ACA L     G  VH   + +     +D  + S+L++M
Sbjct: 131 AGGYGADDDVAPSAHALSASAKACAVLRDLRAGACVHGTTVVR--GYADDGVVLSALVDM 188

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNG 292
           YG  G    A + F       E     D + +TS++  + RN +F E ++ ++AML  +G
Sbjct: 189 YGHSGAPGDARRAF-------EEMRAPDGICYTSLISAFVRNDWFDEALRWFQAMLATDG 241

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGE 348
             PD   F ++++A  +  + + G E      H   L  G        S  +D+  + G 
Sbjct: 242 VYPDGCTFGSMMTALGNLKRARQGRE-----AHAQVLTRGLCGNVIVESSTLDMYAKCGM 296

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
           +  A K+ + M  R    ++VS W ALL      GK E+
Sbjct: 297 MVDAQKVFDRMKVR----NAVS-WCALLGGYCQSGKHEM 330


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/325 (38%), Positives = 196/325 (60%), Gaps = 13/325 (4%)

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            V +AL+D+YAK      A  +F+++  K+ +   +L++G      +   L L   M  +
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G+  D   ++A+L ACA L+  EFG+QVHA  ++    LG+ + + +SL+ MY KCG + 
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKS--GLGSSLSVDNSLVSMYAKCGCIE 120

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A +VF+        EI +DV+ WT+++  Y +NG  +E +  Y  M+ +G KPD + F+
Sbjct: 121 DANKVFD------SMEI-QDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFI 173

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            ++ ACSH G V+ G  YF+ M   Y ++PGPEHY+C++DLL R+G+L +A +L+N+M  
Sbjct: 174 GLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAV 233

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +       ++W ALL+AC   G  ELG+ AA    EL+P N   YV+LSNLY+    W+E
Sbjct: 234 Q----PDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEE 289

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVT 446
             + R LMK +G+ K+ GCSWIE++
Sbjct: 290 AAKTRRLMKLRGVSKEPGCSWIEMS 314



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 139/336 (41%), Gaps = 46/336 (13%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +  +++    NGS   AL+ F  M + GI  D   + + L+A   +    FG
Sbjct: 28  MTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFG 87

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQV A+  KSG  SS+ V ++L+ +YAK   I DA  +FD + +++ +   AL+ GY + 
Sbjct: 88  KQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQN 147

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L     M A G+  D  T   LL AC+     E GR                 +
Sbjct: 148 GRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRS----------------Y 191

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
            Q S+ E+YG                      I      +  M+ + GR+G   E  +L 
Sbjct: 192 FQ-SMEEVYG----------------------IKPGPEHYACMIDLLGRSGKLMEAKELL 228

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLC 344
             M     +PD   +  +++AC   G V+LG      +   ++LEP     Y  L +L  
Sbjct: 229 NQM---AVQPDATVWKALLAACRVHGNVELGERAANNL---FELEPKNAVPYVLLSNLYS 282

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
            AG+ ++A K    M  RG        W  + S  H
Sbjct: 283 AAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVH 318


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/482 (30%), Positives = 233/482 (48%), Gaps = 54/482 (11%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H+H  E GL     +I  + L+  Y  C    ++         ++ R+ + ++ +I+ +
Sbjct: 280 IHSHISERGLETD--MIVANALITMYCKC---NSVQEAREIFDRMSKRDVISWSAMIAGY 334

Query: 62  CRNG-----SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
            ++G     S     +    M   G+F +     S L A T+      G+Q+ A ++K G
Sbjct: 335 AQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVG 394

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFD------------------------------- 145
           +     + +A+ ++YAK   I++AE +F                                
Sbjct: 395 FELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFS 454

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
           E+P +N V  N +++GY +        EL+  M A G   D  T+  +L AC  L+  E 
Sbjct: 455 EMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLER 514

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G+ VHA  ++    L +D  + +SLI MY KCG V +A  VF+          N+D V W
Sbjct: 515 GKLVHAEAVK--LGLESDTVVATSLIGMYSKCGQVAEARTVFDKMS-------NRDTVAW 565

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            +ML  YG++G   E + L++ ML     P+E+    VISACS  G V+ G E F  M  
Sbjct: 566 NAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQE 625

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           D+K+ P  +HY C+VDLL RAG L +A + I  M         +S+W ALL AC      
Sbjct: 626 DFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSM----PCEPDISVWHALLGACKSHNNV 681

Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +L + AA   LEL+P    +Y+ LSN+YA+   WD+  ++R +M ++GLKKD G S IE+
Sbjct: 682 QLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEI 741

Query: 446 TG 447
            G
Sbjct: 742 DG 743



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 192/411 (46%), Gaps = 27/411 (6%)

Query: 34  KNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           +++ +     + +  R+ + ++ +I+ +  N  P  A  TF  M    I  +     S L
Sbjct: 105 EDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSIL 164

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A  +      G+++   V   G  + V V +ALI +Y+K   I  A  +F ++  +N V
Sbjct: 165 KACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVV 224

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
              A++    + +      EL   M   G+  +  T  +LL +C    A   GR++H+++
Sbjct: 225 SWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHI 284

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
             +   L  D+ + ++LI MY KC  V +A ++F+    R       DV+ W++M+  Y 
Sbjct: 285 SER--GLETDMIVANALITMYCKCNSVQEAREIFDRMSKR-------DVISWSAMIAGYA 335

Query: 274 RNGY-----FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDY 327
           ++GY       EV +L E M   G  P++V F++++ AC+  G ++ G + + E     +
Sbjct: 336 QSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGF 395

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
           +L+   +  + + ++  + G + +A ++ ++M ++     +V  W + LS    CG    
Sbjct: 396 ELDRSLQ--TAIFNMYAKCGSIYEAEQVFSKMANK-----NVVAWTSFLSMYIKCGDLS- 447

Query: 388 GKLAAQKAL-ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
              +A+K   E+   NV  + ++   YA+     ++ +L   MK +G + D
Sbjct: 448 ---SAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPD 495



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 152/327 (46%), Gaps = 23/327 (7%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
            C+ G    A++    +   G+ +++      +      +    GK V   + + G    
Sbjct: 31  LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEID 90

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +++G++LI+ Y+K   +  AE +F  + +++ V  +++++ Y      A   +    M  
Sbjct: 91  IYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD 150

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             ++ +  T  ++L+AC   S  E GR++H   I K   +  DV + ++LI MY KCG +
Sbjct: 151 ANIEPNRITFLSILKACNNYSILEKGRKIHT--IVKAMGMETDVAVATALITMYSKCGEI 208

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
           + A +VF    H++     ++VV WT+++    ++    E  +LYE ML  G  P+ V F
Sbjct: 209 SVACEVF----HKM---TERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTF 261

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLI 356
           V+++++C+    +  G       +H +  E G E      + L+ + C+   + +A ++ 
Sbjct: 262 VSLLNSCNTPEALNRG-----RRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIF 316

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCG 383
           + M  R      V  W A+++     G
Sbjct: 317 DRMSKR-----DVISWSAMIAGYAQSG 338


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 225/431 (52%), Gaps = 48/431 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N +++ F  NG    A+  F  M V G + D   +   L A   ++D   G QV 
Sbjct: 204 NLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVH 263

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG-------- 161
            +V K G  S  FV SA++D+Y K   + +   +FDE+        NA L+G        
Sbjct: 264 GYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVD 323

Query: 162 --------YCEAKL------WAG-------------GLELVRLMPALGLDYDHFTLSALL 194
                   + + K+      W                LEL R M A G++ +  T+ +L+
Sbjct: 324 TALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLI 383

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            AC  +SA   G+++H + +R+   + +DV++ S+LI+MY KCG +  A + F+      
Sbjct: 384 PACGNISALMHGKEIHCFSLRR--GIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSAL- 440

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                 ++V W +++  Y  +G  KE ++++  ML +G KPD V F  V+SAC+  G  +
Sbjct: 441 ------NLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTE 494

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G   +  M  ++ +EP  EHY+CLV LL R G+L++A+ +I EM           +WGA
Sbjct: 495 EGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEM----PFEPDACVWGA 550

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LLS+C       LG++AA+K   L+P N G Y++LSN+YA   +WDE  ++RE+MK KGL
Sbjct: 551 LLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGL 610

Query: 435 KKDVGCSWIEV 445
           +K+ G SWIEV
Sbjct: 611 RKNPGYSWIEV 621



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 170/373 (45%), Gaps = 74/373 (19%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           F+ +I  F R+    + L TFS +H   +  D + L S++ +  S++    G+Q+ A   
Sbjct: 72  FSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAA 131

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC------EAK- 166
            SG+L+   V S+L  +Y K   I DA  +FD +P ++ V  +A+++GY       EAK 
Sbjct: 132 ASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKE 191

Query: 167 ----LWAGGLE------------------------LVRLMPALGLDYDHFTLSALLRACA 198
               + +GG+E                        + R+M   G   D  T+S +L A  
Sbjct: 192 LFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVG 251

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN---------- 248
            L     G QVH Y+I++   LG+D F+ S++++MYGKCG V +  +VF+          
Sbjct: 252 CLEDVVVGAQVHGYVIKQ--GLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSL 309

Query: 249 ---LAGHRLEGEINK---------------DVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
              L G    G ++                +VV WTS++    +NG   E ++L+  M  
Sbjct: 310 NAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQA 369

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY--SCLVDLLCRA 346
            G +P+ V   ++I AC +   +  G E     +H + L  G   + Y  S L+D+  + 
Sbjct: 370 YGVEPNAVTIPSLIPACGNISALMHGKE-----IHCFSLRRGIFDDVYVGSALIDMYAKC 424

Query: 347 GELDKAWKLINEM 359
           G +  A +  ++M
Sbjct: 425 GRIQLARRCFDKM 437


>gi|255540655|ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550507|gb|EEF51994.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 441

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/408 (33%), Positives = 206/408 (50%), Gaps = 47/408 (11%)

Query: 70  ALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
           AL  F  M     + LD Y     L + ++V   + G  V AH+ K G+LS+ FV SAL+
Sbjct: 46  ALTLFYHMQTSLALSLDPYVFPLVLKSCSAVLCPQLGTSVHAHIVKMGFLSNPFVASALV 105

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP--------- 179
           D+Y K   I  A  +FDEIP +N V  NA++S Y  +      L++   M          
Sbjct: 106 DMYGKCACIFSARKLFDEIPQRNVVVWNAMISLYTHSNRVRDALDMFDAMEIEPNVSTFN 165

Query: 180 ------------------------ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
                                    LGL  +  TL ALL AC G++A    R++H Y IR
Sbjct: 166 ALIYGLSGVKDGSIKAIAFYWKMRQLGLKPNLITLLALLPACVGIAALNLIREIHGYSIR 225

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
              ++     + S L++ YG+CG +  A  VF        G   +DVV W+S++  Y  +
Sbjct: 226 N--DIDRHPQLGSGLLDAYGRCGCLINASNVFC-------GMKERDVVAWSSLISAYALH 276

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G  K  ++++  M +   +PD++ F+ V+ ACSH G     ++YF  M   Y+L+   +H
Sbjct: 277 GEAKNALEIFRQMELAKVQPDDITFLAVLKACSHAGLADEALDYFTKMQEGYRLQAVSDH 336

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
           YSCLVD+L RAG L +A+K+I EM  +     +   WGALL AC   G+ EL ++  +  
Sbjct: 337 YSCLVDVLSRAGRLYEAYKVIQEMPVK----VTAKAWGALLGACRTYGEIELAEIVGRAL 392

Query: 396 LELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
            E++P N   YV+L+ +YA    +DE  ++R  MKE+G+K   G SW+
Sbjct: 393 FEIEPDNPANYVLLARIYASVGRYDEAQRIRREMKERGVKVSPGSSWV 440


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/390 (34%), Positives = 222/390 (56%), Gaps = 26/390 (6%)

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           ++D  R G P+      S+ + HG+     A  S L AS  V++      + AH  + G+
Sbjct: 338 LADMGRLGVPVD-----SYSYAHGLKACIAASASHLPASARVRE------MHAHAIRRGY 386

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
                V + LID YAKL ++  AE +F  +P +N V  +A++  Y + +     +++ + 
Sbjct: 387 GLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQE 446

Query: 178 MPALGLDY--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           M A   D   +  T+ ++L ACAG++A   G+ +HAY++R+  +L   V   ++L+ MY 
Sbjct: 447 MMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVL--NALMAMYM 504

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG +     +FN  G R      ++VV W S++  YG +G+ +E ++++E M+  G  P
Sbjct: 505 KCGCLETGRYIFNWIGRR------RNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISP 558

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           + + FV+V+ ACSH G V+ G + FE MV +Y + P  EHY+C+VDLL RAG LD+A +L
Sbjct: 559 NIITFVSVLGACSHVGLVEQGKKLFESMV-EYNVTPRAEHYACMVDLLGRAGRLDEAVEL 617

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
           I  M        S  +WG+LL AC   G  E  ++A     +L+P N G YV+L+++YA+
Sbjct: 618 IQSM----RIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYAR 673

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             + +++  L+EL++E  L+K  GCSWIEV
Sbjct: 674 AKLQNQVDVLKELLEEHALEKVPGCSWIEV 703



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 118/250 (47%), Gaps = 22/250 (8%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           S L A+   +D      V   +     + S  F+ + LI+ YA L  +  A  +FDE PV
Sbjct: 253 SLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQVFDEAPV 312

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG--- 206
           KN    NA+L     A      L  +  M  LG+  D ++ +  L+AC   SA+      
Sbjct: 313 KNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLPASA 372

Query: 207 --RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
             R++HA+ IR+    G    + ++LI+ Y K G+V+ A +VF           ++++V 
Sbjct: 373 RVREMHAHAIRR--GYGLHTHVATTLIDCYAKLGIVSYAERVFT-------SMPDRNLVS 423

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTK--PDEVAFVTVISACSHTGQVKLGIEYFEW 322
           W++M+G Y +N    + I++++ M+ +     P+ +  V+V+ AC+    +  G      
Sbjct: 424 WSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQG-----K 478

Query: 323 MVHDYKLEPG 332
           ++H Y L  G
Sbjct: 479 VLHAYILRRG 488


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 215/397 (54%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +NV+I+ +  N      L+ F  M   G         + L+ + S+ D   GKQ+
Sbjct: 498 RDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQI 557

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A +   G  S   +G+ALID+Y+K  ++  A+  F     K+++   AL++GY +    
Sbjct: 558 HAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQH 617

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M   GL  D  T S++++A + L+    GRQ+H+Y+IR      + VF  S
Sbjct: 618 EEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS--GYKSSVFSGS 675

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            L++MY KCG + +AL+ F+    R       + + W +++  Y   G  K  IK++E M
Sbjct: 676 VLVDMYAKCGCLDEALRTFDEMPER-------NSISWNAVISAYAHYGEAKNAIKMFEGM 728

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  G  PD V F++V++ACSH G     ++YF  M H Y + P  EHY+C++D L R G 
Sbjct: 729 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGC 788

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +  K++ EM  +    +   +W ++L +C   G  EL ++AA K   ++P +   YV+
Sbjct: 789 FSQVQKMLVEMPFK----ADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVI 844

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA+   W++   ++++M+++G++K+ G SW+E+
Sbjct: 845 LSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEI 881



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 141/270 (52%), Gaps = 23/270 (8%)

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
           ++S  + +VFV ++L+D Y+K   + D   +FDE+P +++V  N +++ Y   +  A  L
Sbjct: 461 SRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVL 520

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
            L R M  LG D      + +L     L     G+Q+HA ++     L ++  + ++LI+
Sbjct: 521 RLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV--LLGLASEDLLGNALID 578

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY KCG++  A   F+   +R E    K  + WT+++  Y +NG  +E ++L+  M   G
Sbjct: 579 MYSKCGMLDAAKSNFS---NRSE----KSAISWTALITGYVQNGQHEEALQLFSDMRRAG 631

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGE 348
            +PD   F ++I A S    + LG +     +H Y +  G +      S LVD+  + G 
Sbjct: 632 LRPDRATFSSIIKASSSLAMIGLGRQ-----LHSYLIRSGYKSSVFSGSVLVDMYAKCGC 686

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           LD+A +  +EM +R    +S+S W A++SA
Sbjct: 687 LDEALRTFDEMPER----NSIS-WNAVISA 711



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 136/340 (40%), Gaps = 40/340 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN   + +++      G    AL  F  M   G+  D   + + L        +     +
Sbjct: 317 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS-----L 371

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G  + VFV + L+D Y K  L+  A  +F E+  K++V  NA++ G  +  L 
Sbjct: 372 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 431

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L                +A+ R  AG S        +++   +  ++ N VF+ +
Sbjct: 432 TQALQL---------------FAAMRR--AGYSRHPLHLLQYSHSRSRSTSVLN-VFVNN 473

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++ Y KC  +    ++F+    R       D V +  ++  Y  N     V++L+  M
Sbjct: 474 SLLDFYSKCDCLDDMRRLFDEMPER-------DNVSYNVIIAAYAWNQCAATVLRLFREM 526

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRA 346
              G     + + T++S       V +G +    +V    L    E    + L+D+  + 
Sbjct: 527 QKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLV---LLGLASEDLLGNALIDMYSKC 583

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           G LD A    +   ++    S++S W AL++     G+ E
Sbjct: 584 GMLDAAKSNFSNRSEK----SAIS-WTALITGYVQNGQHE 618



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 40/232 (17%)

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            ++F  + ++  Y   G +  A  +F  + HR       +   WT M+  +   G   + 
Sbjct: 286 KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHR-------NATTWTIMMRAHAAAGRTSDA 338

Query: 282 IKLYEAMLMNGTKPDEVAFVTVIS--ACS----HTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           + L+ AML  G  PD V   TV++   C+    H   +K G++   ++            
Sbjct: 339 LSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVC----------- 387

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDR---------------GHGSSSVSMWGALLSACH 380
            + L+D  C+ G L  A ++  EM D+               G  + ++ ++ A+  A +
Sbjct: 388 -NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGY 446

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
                 L + +  ++      NV +   L + Y+K    D++ +L + M E+
Sbjct: 447 SRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPER 498


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 225/396 (56%), Gaps = 15/396 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I++  +NG+   A +    M  +G   +++ L + L A + V   + GKQ+
Sbjct: 385 RNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQI 444

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   +   +S +FV +ALID+YAK   ++ A  +FD    K+ V  N L+ GY +++  
Sbjct: 445 HAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYNTLIVGYSQSQCC 503

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M   G+++D  +    L AC+ LSA + G+++H  ++++   L +  F+ +
Sbjct: 504 FESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRL--LDSHPFLAN 561

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL+++Y K G++  A ++FN    R+     KDV  W +M+  YG +G      +L++ M
Sbjct: 562 SLLDVYTKGGMLDTASKIFN----RI---TQKDVASWNTMILGYGMHGQIDVAFELFDLM 614

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G + D V+++ V+S CSH G V  G +YF  M+    ++P   HY+C+VDLL RAG+
Sbjct: 615 KDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAGQ 673

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L ++ ++I  M  R +      +WGALL +C   G  EL +LAA+   EL P N G Y +
Sbjct: 674 LSESAEIIRNMPFRANSD----VWGALLGSCRIHGDIELARLAAEHLFELKPENSGYYTL 729

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           L N+Y++  MW+E   +++LMK + ++K+   SW++
Sbjct: 730 LRNMYSESGMWNEANGVKKLMKSRKVQKNPAYSWVQ 765



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 171/354 (48%), Gaps = 12/354 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  +N + +N  I  F   G     L+ F  M  H +   +  L S L A   +     G
Sbjct: 281 MQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLG 340

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++  +  +    S +F+ + L+D+YAK      A  +F+ I V+N V  NA+++   + 
Sbjct: 341 KELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQN 400

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              A    LV  M   G   + FTL  LL AC+ +++ + G+Q+HA+ IR+  +L +D+F
Sbjct: 401 GAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRR--SLMSDLF 458

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI++Y KCG +  A  +F+ +         KD V + +++  Y ++    E + L+
Sbjct: 459 VSNALIDVYAKCGQLNLARYIFDRS--------EKDGVSYNTLIVGYSQSQCCFESLHLF 510

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + M + G + D V+F+  +SACS+    K G E    +V    L+  P   + L+D+  +
Sbjct: 511 QQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRL-LDSHPFLANSLLDVYTK 569

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
            G LD A K+ N +  +   S +  + G  +    D   FEL  L     +E D
Sbjct: 570 GGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVA-FELFDLMKDDGIEYD 622



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 159/351 (45%), Gaps = 14/351 (3%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA     GLLL   +   + L+  Y  C    +          +  R+ + +N ++S  
Sbjct: 140 LHAAALRRGLLL-ADVFAGNTLVTFYAVCGRAADA---RRVFDEMPARDVVSWNSLVSAL 195

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             NG    A +    M   G+ ++  +L S L A  + +D  FG  V   V K G  S V
Sbjct: 196 LTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVV 255

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            +G+AL+D+Y K   +  +  +F+ +  KN V  N+ +  +  A      LE+ RLM   
Sbjct: 256 NLGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEH 315

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            +     TLS+LL A   L     G+++H Y IR+     +D+F+ ++L++MY K G   
Sbjct: 316 DVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVE--SDIFIANTLMDMYAKFGCSE 373

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           KA  +F       E    ++VV W +M+    +NG   E  +L   M  NG  P+    V
Sbjct: 374 KASAIF-------ENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLV 426

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            ++ ACS    VK+G +   W +    L       + L+D+  + G+L+ A
Sbjct: 427 NLLPACSRVASVKMGKQIHAWSIR-RSLMSDLFVSNALIDVYAKCGQLNLA 476



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 32/282 (11%)

Query: 105 GKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           G ++ A   + G L + VF G+ L+  YA      DA  +FDE+P ++ V  N+L+S   
Sbjct: 137 GAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALL 196

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR----KCCN 219
              +       V  M   G+  +  +L ++L AC       FG  VH  +++       N
Sbjct: 197 TNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVN 256

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           LGN      +L++MYGK G +  ++ VFN       G   K+ V W S +G +   G+ +
Sbjct: 257 LGN------ALVDMYGKFGDLESSMHVFN-------GMQEKNEVSWNSAIGCFAHAGFHE 303

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---- 335
           +V++++  M  +   P  V   +++ A    G   LG E     +H Y +    E     
Sbjct: 304 DVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKE-----LHGYSIRRAVESDIFI 358

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            + L+D+  + G  +KA  +   +  R     +V  W A+++
Sbjct: 359 ANTLMDMYAKFGCSEKASAIFENIEVR-----NVVSWNAMIA 395


>gi|356564808|ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37320-like [Glycine max]
          Length = 501

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 217/383 (56%), Gaps = 15/383 (3%)

Query: 64  NGSPLYALKTFSFMHV-HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF 122
           NG+        S +H+  G  +D + L  ++++  S +D   G Q       +G+++SV+
Sbjct: 84  NGTTAEITIESSVLHMEQGFGVDVFFLSQAVSSCGSKRDLWGGIQYHCLAITTGFVASVY 143

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           VGS+LI LY++   + DA  +F+E+PV+N V   A+++G+ +       LEL + M    
Sbjct: 144 VGSSLISLYSRCAFLGDACRVFEEMPVRNVVSWTAIIAGFAQEWHVDMCLELFQQMRGSD 203

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           L  ++FT ++LL AC G  A   GR  H  +IR      + + ++++LI MY KCG +  
Sbjct: 204 LRPNYFTYTSLLSACMGSGALGHGRCAHCQIIRM--GFHSYLHIENALISMYSKCGAIDD 261

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           AL +F       E  +++DVV W +M+  Y ++G  +E I L+E M+  G  PD V ++ 
Sbjct: 262 ALHIF-------ENMVSRDVVTWNTMISGYAQHGLAQEAINLFEEMIKQGVNPDAVTYLG 314

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           V+S+C H G VK G  YF  MV ++ ++PG +HYSC+VDLL RAG L +A   I  M   
Sbjct: 315 VLSSCRHGGLVKEGQVYFNSMV-EHGVQPGLDHYSCIVDLLGRAGLLLEARDFIQNMPI- 372

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422
                +  +WG+LLS+    G   +G  AA+  L ++P        L+NLYA+   W+++
Sbjct: 373 ---FPNAVVWGSLLSSSRLHGSVPIGIEAAENRLLMEPGCSATLQQLANLYARVGWWNKV 429

Query: 423 GQLRELMKEKGLKKDVGCSWIEV 445
            ++R+ MK+KGLK + GCSW+EV
Sbjct: 430 ARVRKSMKDKGLKPNPGCSWVEV 452



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 125/304 (41%), Gaps = 33/304 (10%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S L+  Y+ C     LG      + +  RN + +  +I+ F +       L+ F  M   
Sbjct: 146 SSLISLYSRCAF---LGDACRVFEEMPVRNVVSWTAIIAGFAQEWHVDMCLELFQQMRGS 202

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
            +  + +   S L+A         G+     + + G+ S + + +ALI +Y+K   I DA
Sbjct: 203 DLRPNYFTYTSLLSACMGSGALGHGRCAHCQIIRMGFHSYLHIENALISMYSKCGAIDDA 262

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +F+ +  ++ V  N ++SGY +  L    + L   M   G++ D  T   +L +C   
Sbjct: 263 LHIFENMVSRDVVTWNTMISGYAQHGLAQEAINLFEEMIKQGVNPDAVTYLGVLSSCRHG 322

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA------LQVFN------ 248
              + G+     M+      G D +  S ++++ G+ GL+ +A      + +F       
Sbjct: 323 GLVKEGQVYFNSMVEHGVQPGLDHY--SCIVDLLGRAGLLLEARDFIQNMPIFPNAVVWG 380

Query: 249 --LAGHRLEGEINKDV--------------VLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
             L+  RL G +   +                   +  +Y R G++ +V ++ ++M   G
Sbjct: 381 SLLSSSRLHGSVPIGIEAAENRLLMEPGCSATLQQLANLYARVGWWNKVARVRKSMKDKG 440

Query: 293 TKPD 296
            KP+
Sbjct: 441 LKPN 444


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 232/445 (52%), Gaps = 18/445 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHAH  +  L     +  ++ L+  Y  C H   L       + L   + + +N +I  
Sbjct: 337 QVHAHAIKANLESDEYV--KNSLIDMYAKCEH---LTEARAVFEALAEDDAISYNAMIEG 391

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + R G    A+  FS M    +        S L  S+S       KQ+   + KSG    
Sbjct: 392 YSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLD 451

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           ++ GS+LID+Y+K  L+ DA+ +F+ +  ++ V  NA++ G  + +     ++L   +  
Sbjct: 452 LYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQV 511

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            GL  + FT  AL+   + L +   G+Q HA +I+   +  +D  + ++LI+MY KCG +
Sbjct: 512 SGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGAD--SDHHVSNALIDMYAKCGFI 569

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +   +F       E  + KDV+ W SM+  Y ++G  +E + ++  M   G +P+ V F
Sbjct: 570 KEGRLLF-------ESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTF 622

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V V+SAC+H G V  G+ +F++M   Y +EPG EHY+ +V+L  R+G+L  A     E +
Sbjct: 623 VGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAA----KEFI 678

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
           +R     + ++W +LLSACH  G  E+G+ A + AL  DP + G  V++SN+YA   +W 
Sbjct: 679 ERMPIEPAAAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWS 738

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
           +  +LR+ M   G+ K+ G SWIEV
Sbjct: 739 DAQKLRQGMDCAGVVKEPGYSWIEV 763



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 169/357 (47%), Gaps = 27/357 (7%)

Query: 3   HAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVIS 59
           HA    TG L     +F + L+L     R    LG + +  +  +    +N + +   IS
Sbjct: 34  HARAVVTGALPD---LFLANLLL-----RAYSKLGRVRDARRLFDRMPHKNLVSWGSAIS 85

Query: 60  DFCRNGSPLYALKTFSFMH--VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
              ++G    A+  F+       G   + + L S+L A    +   FG+QV     + G 
Sbjct: 86  MHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGL 145

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
             +V+VG+ALI+LYAK+  I  A L+FD +PVKN V   A+++GY +       LEL   
Sbjct: 146 DGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGK 205

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  D F L++ + AC+ L   E GRQ H Y  R       D  + ++LI++Y KC
Sbjct: 206 MGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVE--TDASVINALIDLYCKC 263

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
             ++ A ++F+     +E   N+++V WT+M+  Y +N    E + ++  +   G +PD 
Sbjct: 264 SRLSLARKLFDC----ME---NRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDV 316

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKA 352
            A  +++++C     +  G +      H  K     + Y  + L+D+  +   L +A
Sbjct: 317 FACASILNSCGSLAAIWQGRQVH---AHAIKANLESDEYVKNSLIDMYAKCEHLTEA 370



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 160/335 (47%), Gaps = 23/335 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  +NP+ +  VI+ + + G    AL+ F  M + G+  D + L S+++A +++     G
Sbjct: 175 LPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGG 234

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q   +  +    +   V +ALIDLY K   +  A  +FD +  +N V    +++GY + 
Sbjct: 235 RQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQN 294

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              A  + +   +   G   D F  +++L +C  L+A   GRQVHA+ I+   NL +D +
Sbjct: 295 SCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIK--ANLESDEY 352

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +++SLI+MY KC  +T+A  VF       E     D + + +M+  Y R G     I ++
Sbjct: 353 VKNSLIDMYAKCEHLTEARAVF-------EALAEDDAISYNAMIEGYSRLGDLAGAIDVF 405

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE----HYSCLVD 341
             M     KP  + FV+++   S    ++L  +     +H   ++ G        S L+D
Sbjct: 406 SKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQ-----IHGLIVKSGTSLDLYAGSSLID 460

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +  +   ++ A  + N M +R      + +W A++
Sbjct: 461 VYSKFSLVEDAKAVFNLMHNR-----DMVIWNAMI 490



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 133/275 (48%), Gaps = 16/275 (5%)

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY----CE 164
            A    +G L  +F+ + L+  Y+KL  + DA  +FD +P KN V   + +S +    CE
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
               A      R   + G   + F L++ LRACA   A  FG+QVH   +R    L  +V
Sbjct: 94  EDAVALFAAFQR--ASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVR--IGLDGNV 149

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           ++ ++LI +Y K G +  A+ VF       +    K+ V WT+++  Y + G     ++L
Sbjct: 150 YVGTALINLYAKVGCIDAAMLVF-------DALPVKNPVTWTAVITGYSQIGQGGVALEL 202

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M ++G +PD     + +SACS  G ++ G +   +  +   +E      + L+DL C
Sbjct: 203 FGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGY-AYRIAVETDASVINALIDLYC 261

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           +   L  A KL + M +R   S +  + G + ++C
Sbjct: 262 KCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSC 296


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/429 (32%), Positives = 233/429 (54%), Gaps = 16/429 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I   + LM  Y TC    +   L    + +  +N + +  +I+ +         L+ F  
Sbjct: 143 IYVDNALMDMYATCCDSMDNARLV--FEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQ 200

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M +    L  ++   +++A  S+  +  GKQV A V   G+ S++ V +A++D+Y +   
Sbjct: 201 MFMEEGELSPFSFSIAVSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRC 260

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
             +A+ +F E+  K+++  N L++G+ E       L +   M + G   + FT ++++ A
Sbjct: 261 ASEAKQLFGEMTQKDTITWNTLIAGF-ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAA 319

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA L+    G+Q+H  +I +   L N++ + ++LI+MY KCG V  + ++F+       G
Sbjct: 320 CANLAILYCGQQLHGGIIHR--GLDNNLELSNALIDMYAKCGNVADSHKIFS-------G 370

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
             + ++V WTSM+  YG +G+ KE + L+  M+ +G KPD++ F+ V+SACSH G V  G
Sbjct: 371 MRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEG 430

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           + YF  M   Y + P  + Y+C+VDLL RAG + +A++LI  M  +       S+W ALL
Sbjct: 431 LRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPFK----PDESIWVALL 486

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
            AC    +  + KLAA K LE+ P+  G YV+LSN  A    W +   LR+LM+    KK
Sbjct: 487 GACKKYKQPSIQKLAALKVLEMKPNKAGTYVLLSNFSAAEGNWADFASLRKLMRSTKSKK 546

Query: 437 DVGCSWIEV 445
           +VG SWIE+
Sbjct: 547 EVGRSWIEL 555



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 173/374 (46%), Gaps = 47/374 (12%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I+ +        A   F+ M   G+  + + + + L A  S+K    GK V
Sbjct: 70  RDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDGVKPNAFTVSAVLKACKSLKALLCGKLV 129

Query: 109 QAHVTKSGWL-SSVFVGSALIDLYAKLL-LIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
                K G   SS++V +AL+D+YA     + +A L+F++I  KN+V    L++GY   +
Sbjct: 130 HGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLVFEDIGTKNAVSWTTLITGYTHRR 189

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
              GGL + R M     +   F+ S  + ACA + ++  G+QVHA +I       +++ +
Sbjct: 190 DAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGSSNLGKQVHAAVINH--GFESNLPV 247

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSML-GVYGRNGYFKEVIKL 284
            +++++MY +C   ++A Q+F        GE+  KD + W +++ G    + Y  E + +
Sbjct: 248 MNAILDMYCRCRCASEAKQLF--------GEMTQKDTITWNTLIAGFETLDSY--ESLCI 297

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M+  G  P+   F +VI+AC++   +  G +    ++H   L+   E  + L+D+  
Sbjct: 298 FSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIH-RGLDNNLELSNALIDMYA 356

Query: 345 RAGELDKAWKLINEMLD---------------RGHGSSSVSMWG---------------A 374
           + G +  + K+ + M                  GHG  +V ++                A
Sbjct: 357 KCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMA 416

Query: 375 LLSACHDCGKFELG 388
           +LSAC   G  + G
Sbjct: 417 VLSACSHAGLVDEG 430



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 10/237 (4%)

Query: 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYD 186
           LI  Y       +A  +FDE+P ++ +   ++++GY      +    +   M   G+  +
Sbjct: 47  LIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDGVKPN 106

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK-CGLVTKALQ 245
            FT+SA+L+AC  L A   G+ VH   I K    G+ +++ ++L++MY   C  +  A  
Sbjct: 107 AFTVSAVLKACKSLKALLCGKLVHGLAI-KIGTQGSSIYVDNALMDMYATCCDSMDNARL 165

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
           VF   G        K+ V WT+++  Y         ++++  M M   +    +F   +S
Sbjct: 166 VFEDIG-------TKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVS 218

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           AC+  G   LG +    ++ ++  E      + ++D+ CR     +A +L  EM  +
Sbjct: 219 ACASIGSSNLGKQVHAAVI-NHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQK 274



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 12/116 (10%)

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + + LI+ Y   G   +A  +F+   HR       DV+ WTSM+  Y    +      ++
Sbjct: 43  LTTDLIKSYFDKGSFEEAHTLFDEMPHR-------DVIAWTSMITGYTSCNHHSRAWNVF 95

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
             ML +G KP+      V+ AC     +  G      +VH   ++ G +  S  VD
Sbjct: 96  TNMLRDGVKPNAFTVSAVLKACKSLKALLCGK-----LVHGLAIKIGTQGSSIYVD 146


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 134/392 (34%), Positives = 211/392 (53%), Gaps = 13/392 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N++I+    NG P  AL+    M    I  D     ++    + +KD R G QV   + 
Sbjct: 198 YNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMF 257

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           ++G     FV SA+ID+Y K   I +A  +F+ +  KN V   A+L+ Y +   +   L 
Sbjct: 258 RTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALN 317

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M   GL  + +T + LL +CAG+SA   G+ +H  +  K     + + + ++LI M
Sbjct: 318 FFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRI--KKSGFEDHIIVGNALINM 375

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G +  A +VF      LE  I +D + W++M+     +G  +E + +++ ML    
Sbjct: 376 YSKSGSIEAAHKVF------LE-MICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKE 428

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            P  V FV V+SAC+H G V+ G  Y   ++    +EPG EHY+C+V LLC+AG LD+A 
Sbjct: 429 CPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAE 488

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
             +     +      V  W  LLSACH    + LGK  A+  L++DP +VG Y++LSN+Y
Sbjct: 489 NFMKSTPVKW----DVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMY 544

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           AK   WD + ++R+LM+E+ +KK+ G SWIE+
Sbjct: 545 AKAKRWDGVVKIRKLMRERNVKKEPGASWIEI 576



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 203/444 (45%), Gaps = 29/444 (6%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HAH   T       I+  + L+  Y  C        L + ++    RN + +  +++ +
Sbjct: 47  IHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMR---KRNVVSWGALMAGY 103

Query: 62  CRNGSPLYALKTFSFM-HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
             NG  L  L+ F  M  V  +  + Y   + +++ +       G Q   +  KSG +  
Sbjct: 104 FHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFH 163

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            +V +ALI +Y++   +  A  ++ E+P  +    N +++G  E    +  LE++  M  
Sbjct: 164 QYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVD 223

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             + +D+ T       C+ L     G QVH  M R       D F+ S++I+MYGKCG +
Sbjct: 224 ECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEY--DSFVSSAIIDMYGKCGNI 281

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A +VFN    RL+    K+VV WT++L  Y +NG F+E +  +  M ++G  P+E  F
Sbjct: 282 LNARKVFN----RLQ---TKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTF 334

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLI 356
             ++++C+    +  G      ++H    + G E +    + L+++  ++G ++ A K+ 
Sbjct: 335 AVLLNSCAGISALGHGK-----LLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVF 389

Query: 357 NEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
            EM+ R     S++ W A++     H  G+  L       A +  PH V    +LS    
Sbjct: 390 LEMICR----DSIT-WSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAH 444

Query: 415 KFCMWDEIGQLRELMKEKGLKKDV 438
              + +    L +LMK+ G++  V
Sbjct: 445 LGSVQEGFYYLNQLMKQTGIEPGV 468



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 143/304 (47%), Gaps = 32/304 (10%)

Query: 93  LTASTSVKDARFGKQVQAH--VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           L  S   K+ +FGK + AH  +T      ++   ++LI+LYAK   I  A ++FD +  +
Sbjct: 32  LKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKR 91

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDY---DHFTLSALLRACAGLSAAEFG 206
           N V   AL++GY    L    LE++RL   +  +DY   + +  + ++ +C+       G
Sbjct: 92  NVVSWGALMAGYFHNGLV---LEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEG 148

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
            Q H Y ++    L    +++++LI MY +   V  A+ V+    + + G    DV  + 
Sbjct: 149 WQCHGYALKS--GLVFHQYVKNALICMYSRRSDVKGAMSVW----YEVPG---LDVFSYN 199

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
            ++     NGY  E +++ + M+      D V +VT    CSH   ++LG++     VH 
Sbjct: 200 IIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQ-----VHC 254

Query: 327 YKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
                G E+     S ++D+  + G +  A K+ N +      + +V  W A+L+A    
Sbjct: 255 RMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRL-----QTKNVVSWTAILAAYSQN 309

Query: 383 GKFE 386
           G FE
Sbjct: 310 GCFE 313



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 76/141 (53%), Gaps = 13/141 (9%)

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           LL+  A     +FG+ +HA++I       +++   +SLI +Y KC  +  A  +F     
Sbjct: 31  LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILF----- 85

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTG 311
             +G   ++VV W +++  Y  NG   EV++L++ M+ ++  +P+E  F T+IS+CS +G
Sbjct: 86  --DGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSG 143

Query: 312 QVKLGIEYFEWMVHDYKLEPG 332
           QV  G     W  H Y L+ G
Sbjct: 144 QVVEG-----WQCHGYALKSG 159



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 149/384 (38%), Gaps = 57/384 (14%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVV 57
            VH   F TG      +   S ++  Y  C      G + N  K  N    +N + +  +
Sbjct: 251 QVHCRMFRTGAEYDSFV--SSAIIDMYGKC------GNILNARKVFNRLQTKNVVSWTAI 302

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           ++ + +NG    AL  F  M V G+  + Y     L +   +     GK +   + KSG+
Sbjct: 303 LAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGF 362

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
              + VG+ALI++Y+K   I  A  +F E+  ++S+  +A++ G     L    L + + 
Sbjct: 363 EDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQE 422

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M A      + T   +L ACA L + + G                  +  + L++  G  
Sbjct: 423 MLAAKECPHYVTFVGVLSACAHLGSVQEG-----------------FYYLNQLMKQTG-- 463

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
                               I   V  +T ++G+  + G   E       M     K D 
Sbjct: 464 --------------------IEPGVEHYTCIVGLLCKAGRLDEAENF---MKSTPVKWDV 500

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP-EHYSCLVDLLCRAGELDKAWKLI 356
           VA+ T++SAC       LG +  E ++   +++PG    Y  L ++  +A   D   K+ 
Sbjct: 501 VAWRTLLSACHVHQNYGLGKKVAELVL---QMDPGDVGTYILLSNMYAKAKRWDGVVKIR 557

Query: 357 NEMLDRGHGSSSVSMWGALLSACH 380
             M +R       + W  + ++ H
Sbjct: 558 KLMRERNVKKEPGASWIEIRNSIH 581


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 217/397 (54%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ +  N +IS     G    AL  F  +   G+ ++   L + L ++ S++ A   +QV
Sbjct: 367 RDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQV 426

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K G++    V + LID Y K   + DA  +F+E    + +   ++++   +    
Sbjct: 427 HALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHG 486

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G ++L   M   GL+ D F LS+LL ACA LSA E G+QVHA++I++     +D F  +
Sbjct: 487 EGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR--QFMSDAFAGN 544

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+  Y KCG +  A   F+    R        VV W++M+G   ++G+ K  ++L+  M
Sbjct: 545 ALVYTYAKCGSIEDAELAFSSLPER-------GVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           +  G  P+ +   +V+ AC+H G V     YF  M   + ++   EHYSC++DLL RAG+
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGK 657

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD A +L+N M  +    ++ S+WGALL A       ELGKLAA+K   L+P   G +V+
Sbjct: 658 LDDAMELVNSMPFQ----ANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVL 713

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L+N YA   MW+E+ ++R+LMK+  +KK+   SWIEV
Sbjct: 714 LANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEV 750



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 179/393 (45%), Gaps = 38/393 (9%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNV---- 56
           ++HA   ++G     L  F++ L+  Y+ CR          C + +    P P +V    
Sbjct: 25  HLHASLLKSG----SLASFRNHLISFYSKCRR-------PCCARRVFDEIPDPCHVSWSS 73

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +++ +  NG P  A++ F  M   G+  + +AL   L     V DAR G QV A    +G
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATG 130

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV-KNSVCANALLSGYCEAKLWAGGLELV 175
           + S VFV +AL+ +Y     + DA  +F+E    +N+V  N L+S Y +       +++ 
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
             M   G+    F  S ++ AC G    E GRQVHA ++R       DVF  ++L++MY 
Sbjct: 191 GEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRM--GYDKDVFTANALVDMYM 248

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           K G V  A  +F       E   + DVV W +++     NG+    I+L   M  +G  P
Sbjct: 249 KMGRVDIASVIF-------EKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVP 301

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAW 353
           +     +++ ACS  G   LG +   +M+   K     + Y    LVD+  +   LD A 
Sbjct: 302 NVFTLSSILKACSGAGAFDLGRQIHGFMI---KANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           K+ + M  R      + +  AL+S C   G+ +
Sbjct: 359 KVFDWMFHR-----DLILCNALISGCSHGGRHD 386



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 167/370 (45%), Gaps = 38/370 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N ++S + +N     A++ F  M   GI    +     + A T  ++   G+QV
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V + G+   VF  +AL+D+Y K+  +  A ++F+++P  + V  NAL+SG       
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +EL+  M   GL  + FTLS++L+AC+G  A + GRQ+H +MI+   N  +D ++  
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK--ANADSDDYIGV 342

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            L++MY K   +  A +VF+   HR       D++L  +++      G   E + L+  +
Sbjct: 343 GLVDMYAKNHFLDDARKVFDWMFHR-------DLILCNALISGCSHGGRHDEALSLFYEL 395

Query: 289 LMNGTKPDEVAFVTV------ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY---SCL 339
              G   +      V      + A S T QV        ++   + +    + Y   SCL
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 340 VDL-----LCRAGELDKAWKLINEMLDRGHGSSSVSMW---------------GALLSAC 379
            D       C +G++     +I  +    HG  ++ ++                +LL+AC
Sbjct: 456 SDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 380 HDCGKFELGK 389
                +E GK
Sbjct: 516 ASLSAYEQGK 525



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 135/287 (47%), Gaps = 23/287 (8%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G  + A + KSG L+S    + LI  Y+K      A  +FDEIP    V  ++L++ Y  
Sbjct: 23  GAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             L    ++    M A G+  + F L  +L+    +  A  G QVHA  +      G+DV
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAM--ATGFGSDV 135

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++L+ MYG  G +  A +VFN      E +  ++ V W  ++  Y +N    + I++
Sbjct: 136 FVANALVAMYGGFGFMDDARRVFN------EADSERNAVSWNGLMSAYVKNDQCGDAIQV 189

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M+ +G +P E  F  V++AC+ +  ++ G +    MV     +      + LVD+  
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYM 248

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC----HDCGKFEL 387
           + G +D A  +  +M D     S V  W AL+S C    HD    EL
Sbjct: 249 KMGRVDIASVIFEKMPD-----SDVVSWNALISGCVLNGHDHRAIEL 290


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 217/397 (54%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ +  N +IS     G    AL  F  +   G+ ++   L + L ++ S++ A   +QV
Sbjct: 367 RDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQV 426

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K G++    V + LID Y K   + DA  +F+E    + +   ++++   +    
Sbjct: 427 HALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHG 486

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G ++L   M   GL+ D F LS+LL ACA LSA E G+QVHA++I++     +D F  +
Sbjct: 487 EGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR--QFMSDAFAGN 544

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+  Y KCG +  A   F+    R        VV W++M+G   ++G+ K  ++L+  M
Sbjct: 545 ALVYTYAKCGSIEDAELAFSSLPER-------GVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           +  G  P+ +   +V+ AC+H G V     YF  M   + ++   EHYSC++DLL RAG+
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGK 657

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD A +L+N M  +    ++ S+WGALL A       ELGKLAA+K   L+P   G +V+
Sbjct: 658 LDDAMELVNSMPFQ----ANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVL 713

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L+N YA   MW+E+ ++R+LMK+  +KK+   SWIEV
Sbjct: 714 LANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEV 750



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 178/393 (45%), Gaps = 38/393 (9%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNV---- 56
           ++HA   ++G     L  F++ L+  Y+ CR          C +      P P +V    
Sbjct: 25  HLHASLLKSG----SLASFRNHLISFYSKCRR-------PCCARRFFDEIPDPCHVSWSS 73

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +++ +  NG P  A++ F  M   G+  + +AL   L     V DAR G QV A    +G
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATG 130

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV-KNSVCANALLSGYCEAKLWAGGLELV 175
           + S VFV +AL+ +Y     + DA  +F+E    +N+V  N L+S Y +       +++ 
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
             M   G+    F  S ++ AC G    E GRQVHA ++R       DVF  ++L++MY 
Sbjct: 191 GEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRM--GYDKDVFTANALVDMYM 248

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           K G V  A  +F       E   + DVV W +++     NG+    I+L   M  +G  P
Sbjct: 249 KMGRVDIASVIF-------EKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVP 301

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAW 353
           +     +++ ACS  G   LG +   +M+   K     + Y    LVD+  +   LD A 
Sbjct: 302 NVFTLSSILKACSGAGAFDLGRQIHGFMI---KANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           K+ + M  R      + +  AL+S C   G+ +
Sbjct: 359 KVFDWMFHR-----DLILCNALISGCSHGGRHD 386



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 167/370 (45%), Gaps = 38/370 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N ++S + +N     A++ F  M   GI    +     + A T  ++   G+QV
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V + G+   VF  +AL+D+Y K+  +  A ++F+++P  + V  NAL+SG       
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +EL+  M   GL  + FTLS++L+AC+G  A + GRQ+H +MI+   N  +D ++  
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIK--ANADSDDYIGV 342

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            L++MY K   +  A +VF+   HR       D++L  +++      G   E + L+  +
Sbjct: 343 GLVDMYAKNHFLDDARKVFDWMFHR-------DLILCNALISGCSHGGRHDEALSLFYEL 395

Query: 289 LMNGTKPDEVAFVTV------ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY---SCL 339
              G   +      V      + A S T QV        ++   + +    + Y   SCL
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 340 VDL-----LCRAGELDKAWKLINEMLDRGHGSSSVSMW---------------GALLSAC 379
            D       C +G++     +I  +    HG  ++ ++                +LL+AC
Sbjct: 456 SDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 380 HDCGKFELGK 389
                +E GK
Sbjct: 516 ASLSAYEQGK 525



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 134/287 (46%), Gaps = 23/287 (8%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G  + A + KSG L+S    + LI  Y+K      A   FDEIP    V  ++L++ Y  
Sbjct: 23  GAHLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             L    ++    M A G+  + F L  +L+    +  A  G QVHA  +      G+DV
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAM--ATGFGSDV 135

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++L+ MYG  G +  A +VFN      E +  ++ V W  ++  Y +N    + I++
Sbjct: 136 FVANALVAMYGGFGFMDDARRVFN------EADSERNAVSWNGLMSAYVKNDQCGDAIQV 189

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M+ +G +P E  F  V++AC+ +  ++ G +    MV     +      + LVD+  
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYM 248

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC----HDCGKFEL 387
           + G +D A  +  +M D     S V  W AL+S C    HD    EL
Sbjct: 249 KMGRVDIASVIFEKMPD-----SDVVSWNALISGCVLNGHDHRAIEL 290


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 132/410 (32%), Positives = 225/410 (54%), Gaps = 12/410 (2%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           LG      + +  R+ + +N+VI+ + +N +   A++ F  +   G+  +       L  
Sbjct: 257 LGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNV 316

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
            TS+     GK +   V ++G+     V +AL+ LY +      A  +F ++  K+ +  
Sbjct: 317 YTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITW 376

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
             +   Y +       L+L + M   G      TL A+L  CA L+A + GRQ+H+++I 
Sbjct: 377 TVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIE 436

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
               +  ++ ++++LI MYGKCG + +A+ VF       E    +D+++W SMLG Y ++
Sbjct: 437 NRFRM--EMVVETALINMYGKCGKMAEAMSVF-------EKMAKRDILVWNSMLGAYAQH 487

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           GY+ E ++L+  M ++G K D V+FV+V+SA SH+G V  G +YF  M+ D+ + P PE 
Sbjct: 488 GYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPEL 547

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
           Y C+VDLL RAG + +A  ++ ++   G     + +W  LL AC    K +  K AA++ 
Sbjct: 548 YGCVVDLLGRAGRIQEAVDIVLKL--SGCLPDGI-LWMTLLGACRTHNKTDQAKAAAEQV 604

Query: 396 LELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LE DP + G YV+LSN+YA    WD + ++R+LM+ +G+KK+ G S IE+
Sbjct: 605 LERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEI 654



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 156/354 (44%), Gaps = 16/354 (4%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           DT    + L   +S K+   G++V  HV   G+  +  V   LI +YA+   + +A+ +F
Sbjct: 3   DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 62

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           + +  K+      ++  YC+   +   L +   M    +     T  A+L ACA   + +
Sbjct: 63  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 122

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G ++H  ++++      DVF+ ++LI MY KCG V  A   F    HR       DVV 
Sbjct: 123 DGMEIHGQILQQ--GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-------DVVS 173

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           WT+M+    ++  F     LY  M ++G  P+++   TV +A      +  G ++   +V
Sbjct: 174 WTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLV 232

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
               +E      +  V++   AG L  A +L  +M+DR      V  W  +++       
Sbjct: 233 SSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDR-----DVVTWNIVITLYVQNEN 287

Query: 385 F-ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           F E  +L  +   +    N   +V++ N+Y       +   + EL+KE G  +D
Sbjct: 288 FGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRD 341



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 149/342 (43%), Gaps = 23/342 (6%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
              + L  ++   +  +I  +C+ G    AL  F  M    +        + L A  S +
Sbjct: 60  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 119

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
             + G ++   + + G+   VFVG+ALI++Y K   +  A   F  +  ++ V   A+++
Sbjct: 120 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 179

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
              +   +A    L R M   G+  +  TL  +  A    +    G+ V  Y +     +
Sbjct: 180 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFV--YGLVSSGVM 237

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            +DV + +S + M+G  GL+  A ++F       E  +++DVV W  ++ +Y +N  F E
Sbjct: 238 ESDVRVMNSAVNMFGNAGLLGDARRLF-------EDMVDRDVVTWNIVITLYVQNENFGE 290

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----Y 336
            ++L+  +  +G K +++ FV +++  +    +  G      ++H+   E G +      
Sbjct: 291 AVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGK-----VIHELVKEAGYDRDAVVA 345

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + L+ L  R     +AWK+  +M     GS  V  W  +  A
Sbjct: 346 TALMSLYGRCEAPGQAWKIFVDM-----GSKDVITWTVMCVA 382


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 144/433 (33%), Positives = 223/433 (51%), Gaps = 48/433 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL--DTYALCSSLTASTSVKDARFGK 106
           R+ + +N +I  + R G+P  AL+ F  M      +  D   + ++++    ++D   G+
Sbjct: 189 RDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGR 248

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLY-------------------------------AKLL 135
           ++   V   G   +V + +AL+D+Y                               AK  
Sbjct: 249 RLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFG 308

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
           L+ DA  +FDE+P ++    NAL++GY + K     L L   M    +  D  T+  LL 
Sbjct: 309 LMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLT 368

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC+ L A E G  VH Y+ +    L   V + +SLI+MY KCG + KA+ +F        
Sbjct: 369 ACSQLGALEMGMWVHRYIEKH--RLVFSVALGTSLIDMYAKCGNIEKAIHIFK------- 419

Query: 256 GEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
            EI  K+ + WT+M+     +G+  E I+ +  M+  G KPDE+ F+ V+SAC H G VK
Sbjct: 420 -EIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVK 478

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G E+F  M   Y LE   +HYSC++DLL RAG LD+A +L+N M           +WGA
Sbjct: 479 EGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTM----PMEPDAVVWGA 534

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           +  AC   G   LG+ AA K +E+DP + GIYV+L+N+YA+  M  +  ++R +M+  G+
Sbjct: 535 IFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGV 594

Query: 435 KKDVGCSWIEVTG 447
           +K  GCS IE+ G
Sbjct: 595 EKVPGCSCIELNG 607



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 29/296 (9%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L A   +++  +G    AHV + G  S VFV +A     +    + DA  +FD  PV++ 
Sbjct: 132 LKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDL 191

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALG--LDYDHFTLSALLRACAGLSAAEFGRQVH 210
           V  N L+ GY      A  LEL   M A    +  D  T+ A +  C  +   E GR++H
Sbjct: 192 VSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLH 251

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR----------------- 253
            ++      +   V + ++L++MY KCG +  A  VF    HR                 
Sbjct: 252 GFV--DSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGL 309

Query: 254 -------LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
                   +    +DV  W +++  Y +    KE + L+  M      PDE+  V +++A
Sbjct: 310 MDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTA 369

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           CS  G +++G+ +    +  ++L       + L+D+  + G ++KA  +  E+ ++
Sbjct: 370 CSQLGALEMGM-WVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEK 424



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 11/133 (8%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           DH T   LL+ACA L    +G    A+++R    L +DVF+ ++        G +  A +
Sbjct: 124 DHLTFPFLLKACARLREWGYGDAALAHVLR--LGLDSDVFVVNAATHFLSIRGPMEDARR 181

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKPDEVAFVTV 303
           +F+ +  R       D+V W +++G Y R G   E ++L+  M+      +PDEV  +  
Sbjct: 182 LFDRSPVR-------DLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAA 234

Query: 304 ISACSHTGQVKLG 316
           +S C     ++LG
Sbjct: 235 VSGCGQMRDLELG 247


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/419 (33%), Positives = 225/419 (53%), Gaps = 17/419 (4%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  CR   ++    N    +  ++ + +  +I+ + +N  P+ A+     M       + 
Sbjct: 96  YCKCR---SVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNG 152

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           +   S L A+ +  D+  G+Q+ A   K GW   V+VGSAL+D+YA+   +  A  +FD+
Sbjct: 153 FTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDK 212

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +  KN V  NAL+SG+         L     M   G +  HFT S++  + A L A E G
Sbjct: 213 LDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG 272

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           + VHA++I+    L    F+ ++L++MY K G +  A +VF+    R++   NKD+V W 
Sbjct: 273 KWVHAHVIKSRQKL--TAFVGNTLLDMYAKSGSMIDARKVFD----RVD---NKDLVTWN 323

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           SML  + + G  KE +  +E M  +G   +++ F+ +++ACSH G VK G  YFE M+ +
Sbjct: 324 SMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFE-MMKE 382

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           Y LEP  +HY  +V LL RAG L+ A   I +M        + ++WGALL+AC      +
Sbjct: 383 YDLEPEIDHYVTVVALLGRAGLLNYALVFIFKM----PMEPTAAVWGALLAACRMHKNAK 438

Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +G+ AA    ELDP + G  V+L N+YA    WD   ++R +MK  G+KK+  CSW+E+
Sbjct: 439 VGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEM 497



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 163/324 (50%), Gaps = 34/324 (10%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S +TA    K+    +++ AH+  S +    F+ ++LI +Y K   + DA  +FD++  K
Sbjct: 56  SFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRK 115

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPAL---GLDYDHFTLSALLRACAGLSAAEFGR 207
           + V   +L++GY +  +    +E + L+P +       + FT ++LL+A    + +  GR
Sbjct: 116 DMVSWTSLIAGYAQNDM---PVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGR 172

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q+HA  ++  C    DV++ S+L++MY +CG +  A  VF+    +L+   +K+ V W +
Sbjct: 173 QIHALAVK--CGWHEDVYVGSALLDMYARCGKMDMATAVFD----KLD---SKNGVSWNA 223

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           ++  + R G  +  +  +  ML NG +     + +V S+ +  G ++ G    +W VH +
Sbjct: 224 LISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG----KW-VHAH 278

Query: 328 KLEPGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
            ++   +  +     L+D+  ++G +  A K+ + + ++      +  W ++L+A     
Sbjct: 279 VIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNK-----DLVTWNSMLTA---FA 330

Query: 384 KFELGKLAAQKALELDPHNVGIYV 407
           ++ LGK A     E+     G+Y+
Sbjct: 331 QYGLGKEAVSHFEEM--RKSGVYL 352


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 218/397 (54%), Gaps = 18/397 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHV-HGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +N  IS   R G    AL  F  M    G+  D Y     L ++  ++       + A +
Sbjct: 9   YNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAADALHALL 68

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
            ++G ++ + V +AL+D YAKL     A  +FDE+P ++ V   +LL+G   +      L
Sbjct: 69  LRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAAL 128

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSL 230
            + R M A G++ D + ++A L +CAG +  E G+ VHA  +R    LG + F+   +SL
Sbjct: 129 RVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVR----LGLEPFLSVGNSL 184

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           + MY K G + +A +VF+    R         V WT+++  Y +NG  +E +++Y  M+ 
Sbjct: 185 VSMYAKTGSLREARKVFDATRLRCP-------VTWTALIVGYAQNGRGEESLQVYAEMVH 237

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           +G +PD V F+ ++ ACSH G V  G  +F+ M  D+ + PGP+HY+C+VD+L RAG LD
Sbjct: 238 SGCRPDYVTFIGLLFACSHAGLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLD 297

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +A     E+LD+       ++W ALL AC      EL + AA+    LDP +   Y+MLS
Sbjct: 298 EAM----ELLDQSTMKLDATVWKALLGACRTHRNAELAERAAEMVWRLDPTDAVPYIMLS 353

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           NLY++   W ++ ++R LMK +G+ K+ GCSW+  +G
Sbjct: 354 NLYSRERRWSDVARIRTLMKSRGIAKEPGCSWVVASG 390



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +++   R+GS   AL+ +  M   G+  D Y + ++L++         G+ V
Sbjct: 106 RDVVTWTSLLTGLARSGSHDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSV 165

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   + G    + VG++L+ +YAK   + +A  +FD   ++  V   AL+ GY +    
Sbjct: 166 HATAVRLGLEPFLSVGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTALIVGYAQNGRG 225

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR-QVHAYMIRKCCNLGNDVFMQ 227
              L++   M   G   D+ T   LL AC+     + GR    +         G D +  
Sbjct: 226 EESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLVDAGRAHFKSMQADHGITPGPDHY-- 283

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           + ++++ G+ G + +A+++ + +  +L      D  +W ++LG
Sbjct: 284 ACMVDVLGRAGRLDEAMELLDQSTMKL------DATVWKALLG 320


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 237/448 (52%), Gaps = 20/448 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           +VHA  F+  +     I  +S L+  Y+ C    +   +    K +  ++ + +  +IS 
Sbjct: 394 SVHAELFKRPIQSTSTI--ESALLTLYSKCGCDPDAYLV---FKSMEEKDMVAWGSLISG 448

Query: 61  FCRNGSPLYALKTFSFMHVHGIFL--DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
            C+NG    ALK F  M      L  D+  + S   A   ++  RFG QV   + K+G +
Sbjct: 449 LCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLV 508

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
            +VFVGS+LIDLY+K  L   A  +F  +  +N V  N+++S Y    L    ++L  LM
Sbjct: 509 LNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLM 568

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
            + G+  D  +++++L A +  ++   G+ +H Y +R    + +D  ++++LI+MY KCG
Sbjct: 569 LSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR--LGIPSDTHLKNALIDMYVKCG 626

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
               A  +F    H       K ++ W  M+  YG +G     + L++ M   G  PD+V
Sbjct: 627 FSKYAENIFKKMQH-------KSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDV 679

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            F+++ISAC+H+G V+ G   FE+M  DY +EP  EHY+ +VDLL RAG L++A+  I  
Sbjct: 680 TFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKA 739

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M          S+W  LLSA       ELG L+A+K L ++P     YV L NLY +  +
Sbjct: 740 MPIEADS----SIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGL 795

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEVT 446
            +E  +L  LMKEKGL K  GCSWIEV+
Sbjct: 796 KNEAAKLLGLMKEKGLHKQPGCSWIEVS 823



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 161/337 (47%), Gaps = 25/337 (7%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +  N + +NV+I  F  +G    +L  +     + + L + +   +L A +  +++ FG+
Sbjct: 233 DKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGR 292

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+   V K G  +  +V ++L+ +Y+K  ++ +AE +F  +  K     NA+++ Y E  
Sbjct: 293 QIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAEND 352

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L+L   M    +  D FTLS ++  C+ L    +G+ VHA + ++     + +  
Sbjct: 353 YGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTI-- 410

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           +S+L+ +Y KCG    A  VF      +E    KD+V W S++    +NG FKE +K++ 
Sbjct: 411 ESALLTLYSKCGCDPDAYLVFK----SME---EKDMVAWGSLISGLCKNGKFKEALKVFG 463

Query: 287 AMLMNGT--KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLV 340
            M  +    KPD     +V +AC+    ++ G++     VH   ++ G        S L+
Sbjct: 464 DMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQ-----VHGSMIKTGLVLNVFVGSSLI 518

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           DL  + G  + A K+   M      + ++  W +++S
Sbjct: 519 DLYSKCGLPEMALKVFTSM-----STENMVAWNSMIS 550



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 153/339 (45%), Gaps = 24/339 (7%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQV 108
           +P   N  I    + G  L AL  +S       F    +   S L A +++ +  +GK +
Sbjct: 23  SPASINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTI 82

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD-------EIPVKNSVCANALLSG 161
              V   GW    F+ ++L+++Y K   +  A  +FD        +  ++    N+++ G
Sbjct: 83  HGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDG 142

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC--AGLSAAEFGRQVHAYMIRKCCN 219
           Y + + +  G+   R M   G+  D F+LS ++      G    E G+Q+H +M+R   +
Sbjct: 143 YFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRN--S 200

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L  D F++++LI+MY K GL   A +VF      +E E   +VVLW  M+  +G +G  +
Sbjct: 201 LDTDSFLKTALIDMYFKFGLSIDAWRVF------VEIEDKSNVVLWNVMIVGFGGSGICE 254

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
             + LY     N  K    +F   + ACS +     G +     V    L   P   + L
Sbjct: 255 SSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQ-IHCDVVKMGLHNDPYVCTSL 313

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + +  + G + +A  + + ++D+      + +W A+++A
Sbjct: 314 LSMYSKCGMVGEAETVFSCVVDK-----RLEIWNAMVAA 347



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 158/382 (41%), Gaps = 49/382 (12%)

Query: 6   QFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNG 65
           Q ++G+    + ++ S +   +   R K+ +G     L F    +    ++V+S  C+ G
Sbjct: 123 QSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEG 182

Query: 66  SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGS 125
                    +F                            GKQ+   + ++   +  F+ +
Sbjct: 183 ---------NFRREE------------------------GKQIHGFMLRNSLDTDSFLKT 209

Query: 126 ALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           ALID+Y K  L  DA  +F EI  K N V  N ++ G+  + +    L+L  L     + 
Sbjct: 210 ALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVK 269

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
               + +  L AC+    + FGRQ+H  +++    L ND ++ +SL+ MY KCG+V +A 
Sbjct: 270 LVSTSFTGALGACSQSENSGFGRQIHCDVVK--MGLHNDPYVCTSLLSMYSKCGMVGEAE 327

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            VF+         ++K + +W +M+  Y  N Y    + L+  M      PD      VI
Sbjct: 328 TVFSCV-------VDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVI 380

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           S CS  G    G +     +    ++      S L+ L  + G    A+ +   M ++  
Sbjct: 381 SCCSVLGLYNYG-KSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEK-- 437

Query: 365 GSSSVSMWGALLSACHDCGKFE 386
               +  WG+L+S     GKF+
Sbjct: 438 ---DMVAWGSLISGLCKNGKFK 456


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 234/447 (52%), Gaps = 48/447 (10%)

Query: 35  NLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           +LG L    + L+    RN + +  +I+   + G    ALK +S M   G   +     S
Sbjct: 325 DLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSS 384

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL----------------- 134
            L+A  +++D R G ++ A+  K G  +++FV S+LID+Y K                  
Sbjct: 385 VLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKN 444

Query: 135 -----LLIH---------DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
                 LI          +AE +F+++P +NSV  N ++SGY E + +   L     M A
Sbjct: 445 TVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLA 504

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G      TLS++L ACA L + E GR VHA +++    + +++FM ++L +MY K G +
Sbjct: 505 SGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVK--LGIEDNIFMGTALCDMYAKSGDL 562

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             + +VF    +++     K+ + WT+M+     NG+ +E I L+E M+ NG  P+E  F
Sbjct: 563 DSSRRVF----YQMP---EKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTF 615

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + ++ ACSH G V+  I YFE M   + + P  +HY+C+VD+L RAG L +A     E+L
Sbjct: 616 LAILFACSHCGLVEQAIHYFETM-QAHGIPPKSKHYTCMVDVLARAGCLPEA----EELL 670

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +       S W +LLSAC      E+G+ AA+K  EL+  N   YV+LSN+YA    W 
Sbjct: 671 MKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWK 730

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +  + R LM+   LKKD GCSW+++ G
Sbjct: 731 DAAETRILMQGASLKKDAGCSWLQLRG 757



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 129/268 (48%), Gaps = 35/268 (13%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           +AL+D+YA L  +  A  + D +P +N V    L++ + +    A  L+L   M A G  
Sbjct: 317 TALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCR 376

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            +    S++L ACA L     G ++HA  ++       ++F+ SSLI+MY KC   T A 
Sbjct: 377 PNISCFSSVLSACATLQDLRGGTRIHANALKM--GSSTNLFVSSSLIDMYCKCKQCTYAQ 434

Query: 245 QVFN-------------LAGH-------RLEGEINK----DVVLWTSMLGVYGRNGYFKE 280
           +VFN             ++G+         EG  NK    + V W +M+  Y  N  F +
Sbjct: 435 RVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGD 494

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY---- 336
            +  + AML +G  P E+   +V+ AC++   +++G      MVH   ++ G E      
Sbjct: 495 ALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMG-----RMVHAEIVKLGIEDNIFMG 549

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGH 364
           + L D+  ++G+LD + ++  +M ++ +
Sbjct: 550 TALCDMYAKSGDLDSSRRVFYQMPEKNN 577



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 126/294 (42%), Gaps = 55/294 (18%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           SV   + ++D   K   + DA  +++  P+ +     A++SG+   +L      + R M 
Sbjct: 179 SVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKML 238

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL-GNDVFMQSSLIEMYGKCG 238
              +  +  TL  +++AC G  A EF   +    +   CNL    + + +SLI +Y + G
Sbjct: 239 TCSVRPNVVTLICVIKACVG--AGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMG 296

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY-----------------GRN------ 275
               A +VF+      + E+ +DVV WT++L VY                  RN      
Sbjct: 297 DAAAARRVFD------DMEV-RDVVSWTALLDVYADLGDLDGARRVLDAMPARNEVSWGT 349

Query: 276 --------GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
                   G   E +KLY  ML +G +P+   F +V+SAC+    ++ G       +H  
Sbjct: 350 LIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTR-----IHAN 404

Query: 328 KLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            L+ G        S L+D+ C+  +   A ++ N + ++     +   W +L+S
Sbjct: 405 ALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEK-----NTVCWNSLIS 453



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 126/365 (34%), Gaps = 72/365 (19%)

Query: 50  NPLPFNVVISDF---CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +P P  + I  F     NG PL A     F            LC +++A+++   +    
Sbjct: 34  DPSPLTLPIKAFKLRLANGPPL-APTAKDFKTYSETCASLLRLCRAMSATSTTMPSYAPS 92

Query: 107 Q--------VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA--- 155
                    + AH  +SG  +   V S L+  YA      D +  F +    ++  +   
Sbjct: 93  SGCLPLVLSLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTY 152

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           + ++S + +A   A    L   MP                     S   +   V A M R
Sbjct: 153 DFMVSEHVKAGDIASARRLFYGMPEK-------------------SVVSYTTMVDALMKR 193

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
                          +E+Y +C L                      V  +T+M+  + RN
Sbjct: 194 GSVR---------DAVELYERCPL--------------------HSVAFFTAMISGFVRN 224

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
              K+   ++  ML    +P+ V  + VI AC   G+  L +      V     E   E 
Sbjct: 225 ELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEV 284

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
           ++ L+ L  R G+   A ++ ++M  R      V  W ALL    D G  +     A++ 
Sbjct: 285 HNSLITLYLRMGDAAAARRVFDDMEVR-----DVVSWTALLDVYADLGDLD----GARRV 335

Query: 396 LELDP 400
           L+  P
Sbjct: 336 LDAMP 340


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/397 (32%), Positives = 214/397 (53%), Gaps = 11/397 (2%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +   G+   AL+ F  M    +  D   + + ++AS        G+QV
Sbjct: 158 KDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQV 217

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +   G+ S++ + +ALID Y+K   +  A  +F  +  K+ +  N L+ GY    L+
Sbjct: 218 HSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLY 277

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M   G   +  T+ ++L ACA L A + GR +H Y+ ++   + N   +++
Sbjct: 278 KEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT 337

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A QVFN   H       K +  W +M+  +  +G       ++  M
Sbjct: 338 SLIDMYSKCGDIEAAHQVFNSMLH-------KSLPAWNAMIFGFAMHGRANAAFDIFSRM 390

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             N  KPD++ FV ++SACSH G + LG   F  M H+YK+ P  EHY C++DLL  +G 
Sbjct: 391 RKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGL 450

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +A ++I+ M     G     +W +LL AC   G  ELG+  AQ   +++P+N G YV+
Sbjct: 451 FKEAEEMISTMTMEPDG----VIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVL 506

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W+E+ ++R L+ +KG+KK  GCS IE+
Sbjct: 507 LSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEI 543



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 190/418 (45%), Gaps = 58/418 (13%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           H + L    +  + +   N L +N +      +  P+ ALK +  M   G+  ++Y    
Sbjct: 9   HFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPF 68

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL--------- 142
            L +   +K ++ G Q+  HV K G+   ++V ++LI +Y +   + DA           
Sbjct: 69  LLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRD 128

Query: 143 ----------------------MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
                                 MFDEIPVK+ V  NA++SGY E   +   LEL + M  
Sbjct: 129 VVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMK 188

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             +  D  T+  ++ A A   + E GRQVH+++       G+++ + ++LI+ Y KCG +
Sbjct: 189 TNVRPDESTMVTVISASARSGSIELGRQVHSWIADH--GFGSNLKIVNALIDFYSKCGEM 246

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A  +F        G   KDV+ W  ++G Y     +KE + L++ ML +G  P++V  
Sbjct: 247 ETACGLF-------LGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTM 299

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDY--KLEPGPEHYS----CLVDLLCRAGELDKAWK 354
           ++++ AC+H G + +G     W +H Y  K   G  + S     L+D+  + G+++ A +
Sbjct: 300 LSILHACAHLGAIDIG----RW-IHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQ 354

Query: 355 LINEMLDRGHGSSSVSMWGALL--SACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           + N ML +     S+  W A++   A H          +  +  E+ P ++    +LS
Sbjct: 355 VFNSMLHK-----SLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLS 407


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 135/397 (34%), Positives = 218/397 (54%), Gaps = 14/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +  +I+ + +N  P  AL     M       + +   S L A+ +   +  G+Q+
Sbjct: 128 RDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI 187

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K  W   V+VGSAL+D+YA+   +  A  +FD++  KN V  NAL++G+      
Sbjct: 188 HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDG 247

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L +   M   G +  HFT S++  A AG+ A E G+ VHA+MI+    L    F+ +
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLS--AFVGN 305

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           ++++MY K G +  A +VF+    R++    KDVV W SML  + + G  +E +  +E M
Sbjct: 306 TILDMYAKSGSMIDARKVFD----RVD---KKDVVTWNSMLTAFAQYGLGREAVTHFEEM 358

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G   +++ F+++++ACSH G VK G +YF+ M+ +Y LEP  +HY  +VDLL RAG 
Sbjct: 359 RKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGL 417

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L+ A   I +M  +     + ++WGALL +C      ++G+ AA    ELDP + G  V+
Sbjct: 418 LNDALVFIFKMPMK----PTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVL 473

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L N+YA    WD   ++R++MK  G+KK+  CSW+E+
Sbjct: 474 LYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEI 510



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 159/317 (50%), Gaps = 31/317 (9%)

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           ++L ++     S+ DAR    + AH+  S +  SVF+ ++LI LY K   + DA  +FD 
Sbjct: 68  HSLITACARYRSLDDAR---AIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDG 124

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +P ++     +L++GY +  +    L L+  M       + FT ++LL+A    +++  G
Sbjct: 125 MPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG 184

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
            Q+HA  ++   +  +DV++ S+L++MY +CG +  A+ VF+    +LE   +K+ V W 
Sbjct: 185 EQIHALTVK--YDWHDDVYVGSALLDMYARCGRMDMAIAVFD----QLE---SKNGVSWN 235

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +++  + R G  +  + ++  M  NG +     + +V SA +  G ++ G    +W VH 
Sbjct: 236 ALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG----KW-VHA 290

Query: 327 YKLEPGPEHYSCLV-----DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
           + ++ G E  S  V     D+  ++G +  A K+ + +         V  W ++L+A   
Sbjct: 291 HMIKSG-ERLSAFVGNTILDMYAKSGSMIDARKVFDRV-----DKKDVVTWNSMLTA--- 341

Query: 382 CGKFELGKLAAQKALEL 398
             ++ LG+ A     E+
Sbjct: 342 FAQYGLGREAVTHFEEM 358



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 10/226 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  +N + +N +I+ F R G     L  F+ M  +G     +   S  +A   +     G
Sbjct: 226 LESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 285

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V AH+ KSG   S FVG+ ++D+YAK   + DA  +FD +  K+ V  N++L+ + + 
Sbjct: 286 KWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQY 345

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    +     M   G+  +  T  ++L AC+     + G+Q    M  K  NL  ++ 
Sbjct: 346 GLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM--KEYNLEPEID 403

Query: 226 MQSSLIEMYGKCGLVTKALQ-VFNLAGHRLEGEINKDVVLWTSMLG 270
              +++++ G+ GL+  AL  +F +        +     +W ++LG
Sbjct: 404 HYVTVVDLLGRAGLLNDALVFIFKM-------PMKPTAAVWGALLG 442


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 231/431 (53%), Gaps = 17/431 (3%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           +  ++L+  Y  C     +G        +  RN   +NV+I  + R G    A++ +  M
Sbjct: 98  VLSTKLVDLYAAC---GQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGM 154

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
             HG+  D +     L A  ++ D   G++V   V+ + W   VFV + ++D+YAK   +
Sbjct: 155 VEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCV 214

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
            DA  +FD I V+++V  N++++ Y +       L L R M A G+     TL + + A 
Sbjct: 215 DDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAA 274

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A  +A   GR++H +  R+   L +   +++SL++MY K G V  A  +F       E  
Sbjct: 275 ADAAALPRGRELHGFGWRRGFGLQDK--LKTSLVDMYAKSGWVQVARVLF-------EQL 325

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLG 316
           + +++V W +M+  YG +G+  E + L+  M  +    PD + FV V+SAC+H G V+  
Sbjct: 326 MKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEA 385

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            E+F  MV+ Y ++P  +HY+C++D+L   G  ++A+ LI  M           +WGALL
Sbjct: 386 KEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGM----SIEPDSGIWGALL 441

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           + C      ELG+LA QK +EL+P + G YV LSN+YA+   W++  ++R+LM  +GLKK
Sbjct: 442 NGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKK 501

Query: 437 DVGCSWIEVTG 447
            + CSWIE+ G
Sbjct: 502 ILACSWIELKG 512



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 131/277 (47%), Gaps = 17/277 (6%)

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           ++  S  AS S+   R G+Q+   +  SG      + + L+DLYA    +  A  +FD +
Sbjct: 67  SILQSCVASGSL---RAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGM 123

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           P +N    N L+  Y         + L R M   G++ D+FT   +L+ACA L   E GR
Sbjct: 124 PKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGR 183

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           +VH  +       G DVF+ + +++MY KCG V  A  VF       +G   +D V+W S
Sbjct: 184 EVHQRV--SGTRWGQDVFVCAGVVDMYAKCGCVDDARAVF-------DGIAVRDAVVWNS 234

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY--FEWMVH 325
           M+  YG+NG   E + L   M  NG  P     V+ +SA +    +  G E   F W   
Sbjct: 235 MIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWR-R 293

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
            + L+   +  + LVD+  ++G +  A  L  +++ R
Sbjct: 294 GFGLQ--DKLKTSLVDMYAKSGWVQVARVLFEQLMKR 328



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 96/202 (47%), Gaps = 21/202 (10%)

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
           Y H T  ++L++C    +   GRQ+H  ++     LG D  + + L+++Y  CG V  A 
Sbjct: 62  YHHHT--SILQSCVASGSLRAGRQLHGRLL--VSGLGPDTVLSTKLVDLYAACGQVGHAR 117

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           ++F       +G   ++V LW  ++  Y R G  +  ++LY  M+ +G +PD   +  V+
Sbjct: 118 RLF-------DGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVL 170

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVDLLCRAGELDKAWKLINEMLDR 362
            AC+    ++ G E  + +        G + + C  +VD+  + G +D A  + + +  R
Sbjct: 171 KACAALLDLETGREVHQRV---SGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVR 227

Query: 363 GHGSSSVSMWGALLSACHDCGK 384
                   +W ++++A    G+
Sbjct: 228 -----DAVVWNSMIAAYGQNGR 244


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/404 (33%), Positives = 220/404 (54%), Gaps = 21/404 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS   + G    A++ F  M   G+  D   L S  +A     D    K V
Sbjct: 232 RDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSV 291

Query: 109 QAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
             +V + GW +  +  G+A++D+YAK+  I  A+ +FD +P ++ V  N L++GY +  L
Sbjct: 292 HCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGL 351

Query: 168 WAGGLELVRLMPAL----GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
                E +R+   +    GL     T  ++L A + L   + G ++HA  I+   NL  D
Sbjct: 352 ---ANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNL--D 406

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V++ + LI++Y KCG + +A+ +F     R  G        W +++   G +G+  + + 
Sbjct: 407 VYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP-------WNAIIAGLGVHGHGAKALS 459

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           L+  M     KPD V FV++++ACSH G V  G  +F+ M   Y + P  +HY+C+VD+L
Sbjct: 460 LFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDML 519

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            RAG+LD+A++ I  M  +       ++WGALL AC   G  E+GK+A+Q   ELDP NV
Sbjct: 520 GRAGQLDEAFEFIQSMPIK----PDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENV 575

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           G YV++SN+YAK   WD +  +R L++ + L+K  G S +EV G
Sbjct: 576 GYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKG 619



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 172/372 (46%), Gaps = 28/372 (7%)

Query: 48  PRNPLP-FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           P   +P +N ++S  CRN     A+     M   G+  D   L S L     + D     
Sbjct: 129 PERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALAL 188

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +  +  K G    +FV +ALID+Y KL ++ +A  +F  + +++ V  N+++S   +  
Sbjct: 189 VMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGG 248

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
             A  +EL   M   G+  D  TL +L  A A        + VH Y+ R+  ++G D+  
Sbjct: 249 KVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVG-DIIA 307

Query: 227 QSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
            +++++MY K   +  A +VF NL         ++DVV W +++  Y +NG   E I++Y
Sbjct: 308 GNAMVDMYAKMSKIDAAQKVFDNLP--------DRDVVSWNTLITGYMQNGLANEAIRIY 359

Query: 286 EAMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE----HYSCLV 340
             M  + G KP +  FV+V+ A S+ G ++ G+      +H   ++ G        +CL+
Sbjct: 360 NDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMR-----MHALSIKTGLNLDVYVTTCLI 414

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALEL 398
           DL  + G+L +A  L   M  R  G      W A+++    H  G   L   +  +  E+
Sbjct: 415 DLYAKCGKLVEAMFLFEHMPRRSTGP-----WNAIIAGLGVHGHGAKALSLFSQMQQEEI 469

Query: 399 DPHNVGIYVMLS 410
            P +V    +L+
Sbjct: 470 KPDHVTFVSLLA 481



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 164/365 (44%), Gaps = 30/365 (8%)

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIH 138
           H +  D++     + A+     A    Q+ A   + G L  +VF   +L+  Y +   + 
Sbjct: 63  HPLRPDSFTFPPLVRAAPGPASA---AQLHACALRLGLLHPNVFASGSLVHAYLRFGRVA 119

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           +A  +FDE+P ++    NA+LSG C     A  + L+  M   G+  D  TLS++L  C 
Sbjct: 120 EAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCV 179

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            L        +H Y ++    L  ++F+ ++LI++YGK G++T+A  VF        G  
Sbjct: 180 VLGDRALALVMHVYAVKH--GLSGELFVCNALIDVYGKLGMLTEAHWVFG-------GMA 230

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            +D+V W S++    + G     ++L+  M+ +G  PD +  V++ SA +  G  +LG +
Sbjct: 231 LRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGD-ELGAK 289

Query: 319 YFEWMVHDYKLEPGP-EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
                V     + G     + +VD+  +  ++D A K+ + + DR      V  W  L++
Sbjct: 290 SVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDR-----DVVSWNTLIT 344

Query: 378 ACHDCGKFELGKLAAQKALEL--DPHN-VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
                G        A +A+ +  D HN  G+  +     +    +  +G L++ M+   L
Sbjct: 345 GYMQNG-------LANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHAL 397

Query: 435 KKDVG 439
               G
Sbjct: 398 SIKTG 402



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 43/272 (15%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARF 104
           L  R+ + +N +I+ + +NG    A++ ++ MH H G+        S L A + +   + 
Sbjct: 331 LPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQ 390

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G ++ A   K+G    V+V + LIDLYAK   + +A  +F+ +P +++   NA+++G   
Sbjct: 391 GMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGV 450

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
               A  L L   M    +  DH T  +LL AC+     + GR                 
Sbjct: 451 HGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFD------------- 497

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            MQ+    +YG          +  +A H            +T M+ + GR G   E  + 
Sbjct: 498 LMQT----VYG----------IVPIAKH------------YTCMVDMLGRAGQLDEAFEF 531

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            ++M +   KPD   +  ++ AC   G V++G
Sbjct: 532 IQSMPI---KPDSAVWGALLGACRIHGNVEMG 560


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 129/414 (31%), Positives = 221/414 (53%), Gaps = 13/414 (3%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           H  ++ ++    + +  ++ + +N +I+   RNG     L     M    +  D++ L S
Sbjct: 246 HSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSS 305

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L       D   GK++     + G  + V+V S+LID+YAK   + D+  +F  +  ++
Sbjct: 306 VLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERD 365

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            +  N++++G  +  L+  GL+  R M    +    ++ S+++ ACA L+    G+Q+H 
Sbjct: 366 GISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHG 425

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           Y+ R       ++F+ SSL++MY KCG +  A Q+F+    RL     +D+V WT+M+  
Sbjct: 426 YITRN--GFDENIFIASSLVDMYAKCGNIRTARQIFDRM--RL-----RDMVSWTAMIMG 476

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
              +G+  + I+L+E M   G +P+ VAF+ V++ACSH G V    +YF  M  D+ + P
Sbjct: 477 CALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAP 536

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
           G EHY+ + DLL RAG L++A+  I  M     G    S+W  LLSAC      ++ +  
Sbjct: 537 GVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTG----SVWATLLSACRVHKNVDMAEKV 592

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A + LE+DP N G Y++L+N+Y+    W E  + R  ++  G++K   CSWIEV
Sbjct: 593 ANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEV 646



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/357 (20%), Positives = 137/357 (38%), Gaps = 65/357 (18%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           L +  VI  +  +G P  +L +F  M   G++ D     S L A   + D   G+ +  +
Sbjct: 74  LAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGY 133

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHD-------AELMFDEIPVKN-SVCANALLSGYC 163
           + + G    ++ G+AL+++Y+KL  +         A  + DE+  +  SV   ++L G  
Sbjct: 134 IIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQ 193

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV--------HAYMIR 215
             K+                D + F      R      + EF  QV          Y   
Sbjct: 194 GRKV---------------SDIEAFNYDVSCR------SREFEAQVLEIDYKPRSEYREM 232

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
           + CNLG  +   S  +        V    ++F +          KD+V W +++    RN
Sbjct: 233 EACNLGQQIKDISHSMS-------VDSVRKIFEMMPE-------KDLVSWNTIIAGNARN 278

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--P 333
           G + E + +   M     KPD     +V+   +    +  G E     +H   +  G   
Sbjct: 279 GLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKE-----IHGCSIRQGLDA 333

Query: 334 EHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           E Y  S L+D+  +   +  ++++   + +R   S     W ++++ C   G F+ G
Sbjct: 334 EVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGIS-----WNSIIAGCVQNGLFDEG 385



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 4/159 (2%)

Query: 86  TYALCSSLTAST-SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           T AL +SL  +  S+K     +Q+ A V K    SS+   S L+ +Y+ + L+HD+  +F
Sbjct: 7   TEALVNSLLRNPLSIKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINLLHDSLRLF 65

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           + +    ++   +++  Y    L    L     M A GL  DH    ++L+ACA L    
Sbjct: 66  NTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLN 125

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
            G  +H Y+IR    L  D++  ++L+ MY K   + K+
Sbjct: 126 LGESLHGYIIR--VGLDFDLYTGNALMNMYSKLRFLKKS 162


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/397 (32%), Positives = 213/397 (53%), Gaps = 11/397 (2%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +   G+   AL+ F  M    +  D   + S ++A         G+QV
Sbjct: 198 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 257

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +   G+ S++ + +ALIDLY K   +  A  +F+ +  K+ +  N L+ GY    L+
Sbjct: 258 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 317

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M   G   +  T+ ++L ACA L A E GR +H Y+ ++   + N    ++
Sbjct: 318 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 377

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A QVF       +  +N+ +  W +M+  +  +G       ++  M
Sbjct: 378 SLIDMYAKCGDIEAAQQVF-------DSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 430

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             N  +PD++ FV ++SACSH+G + LG   F  M  DYK+ P  EHY C++DLL  +G 
Sbjct: 431 RKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGL 490

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +A ++IN M     G     +W +LL AC      ELG+  AQ  ++++P N G YV+
Sbjct: 491 FKEAEEMINTMEMEPDG----VIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVL 546

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W+E+ ++R L+ +KG+KK  GCS IE+
Sbjct: 547 LSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEI 583



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 207/448 (46%), Gaps = 60/448 (13%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA   +TGL      +  S+L+       H   L    +  + +   N L +N +    
Sbjct: 21  IHAQMIKTGLHNTNYAL--SKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 78

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +  P+ AL  +  M   G+  + Y     L +    K  R G+Q+  HV K G+   +
Sbjct: 79  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 138

Query: 122 FVGSALIDLYAKLLLIHDA-------------------------------ELMFDEIPVK 150
           +V ++LI +Y +   + DA                               + MFDEIP+K
Sbjct: 139 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 198

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V  NA++SGY E       LEL + M    +  D  T+ +++ ACA  ++ E GRQVH
Sbjct: 199 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVH 258

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           +++       G+++ + ++LI++Y KCG V  A  +F       EG   KDV+ W +++G
Sbjct: 259 SWIDDH--GFGSNLKIVNALIDLYIKCGEVETACGLF-------EGLSYKDVISWNTLIG 309

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--- 327
            Y     +KE + L++ ML +G  P++V  ++++ AC+H G +++G     W +H Y   
Sbjct: 310 GYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIG----RW-IHVYINK 364

Query: 328 ---KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL--SACHDC 382
               +     H + L+D+  + G+++ A ++ + +L+R     S+S W A++   A H  
Sbjct: 365 RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNR-----SLSSWNAMIFGFAMHGR 419

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLS 410
                   +  +  E++P ++    +LS
Sbjct: 420 ANAAFDIFSRMRKNEIEPDDITFVGLLS 447


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/397 (34%), Positives = 218/397 (54%), Gaps = 14/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +  +I+ + +N  P  AL     M       + +   S L A+ +   +  G+Q+
Sbjct: 128 RDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQI 187

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K  W   V+VGSAL+D+YA+   +  A  +FD++  KN V  NAL++G+      
Sbjct: 188 HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDG 247

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L +   M   G +  HFT S++  A AG+ A E G+ VHA+MI+    L    F+ +
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLS--AFVGN 305

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           ++++MY K G +  A +VF+    R++    KDVV W SML  + + G  +E +  +E M
Sbjct: 306 TILDMYAKSGSMIDARKVFD----RVD---KKDVVTWNSMLTAFAQYGLGREAVTHFEEM 358

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G   +++ F+++++ACSH G VK G +YF+ M+ +Y LEP  +HY  +VDLL RAG 
Sbjct: 359 RKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGL 417

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L+ A   I +M  +     + ++WGALL +C      ++G+ AA    ELDP + G  V+
Sbjct: 418 LNDALVFIFKMPMK----PTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVL 473

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L N+YA    WD   ++R++MK  G+KK+  CSW+E+
Sbjct: 474 LYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEI 510



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 159/317 (50%), Gaps = 31/317 (9%)

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           ++L ++     S+ DAR    + AH+  S +  SVF+ ++LI LY K   + DA  +FD 
Sbjct: 68  HSLITACARYRSLDDAR---AIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDG 124

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +P ++     +L++GY +  +    L L+  M       + FT ++LL+A    +++  G
Sbjct: 125 MPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIG 184

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
            Q+HA  ++   +  +DV++ S+L++MY +CG +  A+ VF+    +LE   +K+ V W 
Sbjct: 185 EQIHALTVK--YDWHDDVYVGSALLDMYARCGRMDMAIAVFD----QLE---SKNGVSWN 235

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +++  + R G  +  + ++  M  NG +     + +V SA +  G ++ G    +W VH 
Sbjct: 236 ALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG----KW-VHA 290

Query: 327 YKLEPGPEHYSCLV-----DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
           + ++ G E  S  V     D+  ++G +  A K+ + +         V  W ++L+A   
Sbjct: 291 HMIKSG-ERLSAFVGNTILDMYAKSGSMIDARKVFDRV-----DKKDVVTWNSMLTA--- 341

Query: 382 CGKFELGKLAAQKALEL 398
             ++ LG+ A     E+
Sbjct: 342 FAQYGLGREAVTHFEEM 358



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 10/226 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  +N + +N +I+ F R G     L  F+ M  +G     +   S  +A   +     G
Sbjct: 226 LESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG 285

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V AH+ KSG   S FVG+ ++D+YAK   + DA  +FD +  K+ V  N++L+ + + 
Sbjct: 286 KWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQY 345

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    +     M   G+  +  T  ++L AC+     + G+Q    M  K  NL  ++ 
Sbjct: 346 GLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM--KEYNLEPEID 403

Query: 226 MQSSLIEMYGKCGLVTKALQ-VFNLAGHRLEGEINKDVVLWTSMLG 270
              +++++ G+ GL+  AL  +F +        +     +W ++LG
Sbjct: 404 HYVTVVDLLGRAGLLNDALVFIFKMP-------MKPTAAVWGALLG 442


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/445 (32%), Positives = 226/445 (50%), Gaps = 18/445 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +H    E+GL L   +   + L+  Y  C    +L    N    L  R+ + +  +I  
Sbjct: 553 QIHGRITESGLQLD--VNLGNALINMYIRC---GSLQDARNVFHSLQHRDVMSWTAMIGG 607

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
               G  + A++ F  M   G         S L   TS      GK+V A++  SG+   
Sbjct: 608 CADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELD 667

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
             VG+ALI  Y+K   + DA  +FD++P ++ V  N +++GY +  L    +E    M  
Sbjct: 668 TGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQE 727

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             +  + F+  +LL AC+  SA E G++VHA ++++   L  DV + ++LI MY KCG  
Sbjct: 728 QDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKR--KLQGDVRVGAALISMYAKCGSQ 785

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +A +VF       +  I K+VV W +M+  Y ++G   + +  +  M   G KPD   F
Sbjct: 786 GEAQEVF-------DNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTF 838

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
            +++SAC+H G V  G + F  M  +Y + P  EHY CLV LL RA    +A  LIN+M 
Sbjct: 839 TSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQM- 897

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
                    ++W  LL AC   G   L + AA  AL+L+  N  +Y++LSN+YA    WD
Sbjct: 898 ---PFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWD 954

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
           ++ ++R +M+ +G++K+ G SWIEV
Sbjct: 955 DVAKIRRVMEGRGIRKEPGRSWIEV 979



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 173/357 (48%), Gaps = 15/357 (4%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY 87
           T C    ++ +     K    R+ + +N +I+   ++G  + A + +  M   G+ L+  
Sbjct: 272 TMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRT 331

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
              S L A ++ K    GK + +H+++ G  S V +G+ALI +YA+   +  A  +F  +
Sbjct: 332 TYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTM 391

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           P ++ +  NA+++GY   +     + L + M + G+     T   LL ACA  SA   G+
Sbjct: 392 PKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
            +H  ++R    + ++  + ++L+ MY +CG + +A  VF       EG   +DV+ W S
Sbjct: 452 MIHEDILRS--GIKSNGHLANALMNMYRRCGSLMEAQNVF-------EGTQARDVISWNS 502

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           M+  + ++G ++   KL++ M     +PD + F +V+S C +   ++LG +     + + 
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELG-KQIHGRITES 561

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            L+      + L+++  R G L  A  + + +  R      V  W A++  C D G+
Sbjct: 562 GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-----DVMSWTAMIGGCADQGE 613



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 138/286 (48%), Gaps = 19/286 (6%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            K++ A + ++     +F+ + LI++Y K   + DA  +F E+P ++ +  N+L+S Y +
Sbjct: 46  AKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQ 105

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                   +L   M   G   +  T  ++L AC   +  E G+++H+ +I+       D 
Sbjct: 106 QGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIK--AGYQRDP 163

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            +Q+SL+ MYGKCG + +A QVF        G   +DVV + +MLG+Y +  Y KE + L
Sbjct: 164 RVQNSLLSMYGKCGDLPRARQVF-------AGISPRDVVSYNTMLGLYAQKAYVKECLGL 216

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M   G  PD+V ++ ++ A +    +  G    +  V +  L       + LV +  
Sbjct: 217 FGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE-GLNSDIRVGTALVTMCV 275

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC----HDCGKFE 386
           R G++D A +      DR      V ++ AL++A     H+   FE
Sbjct: 276 RCGDVDSAKQAFKGTADR-----DVVVYNALIAALAQHGHNVEAFE 316



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 163/356 (45%), Gaps = 18/356 (5%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           LM  Y  C    +L    N  +    R+ + +N +I+   ++GS   A K F  M    +
Sbjct: 472 LMNMYRRC---GSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEEL 528

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             D     S L+   + +    GKQ+   +T+SG    V +G+ALI++Y +   + DA  
Sbjct: 529 EPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARN 588

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F  +  ++ +   A++ G  +       +EL   M   G      T S++L+ C   + 
Sbjct: 589 VFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSAC 648

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            + G++V AY++     L  D  + ++LI  Y K G +T A +VF+    R       D+
Sbjct: 649 LDEGKKVIAYILNSGYEL--DTGVGNALISAYSKSGSMTDAREVFDKMPSR-------DI 699

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V W  ++  Y +NG  +  ++    M      P++ +FV++++ACS    ++ G      
Sbjct: 700 VSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAE 759

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +V   KL+      + L+ +  + G   +A ++ + ++++     +V  W A+++A
Sbjct: 760 IV-KRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEK-----NVVTWNAMINA 809



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 161/352 (45%), Gaps = 26/352 (7%)

Query: 18  IFQSRLMLP-YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           IF S L++  Y  CR   ++       K +  R+ + +N +IS + + G    A + F  
Sbjct: 62  IFLSNLLINMYVKCR---SVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEE 118

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G   +     S LTA  S  +   GK++ + + K+G+     V ++L+ +Y K   
Sbjct: 119 MQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD 178

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A  +F  I  ++ V  N +L  Y +       L L   M + G+  D  T   LL A
Sbjct: 179 LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDA 238

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
               S  + G+++H   + +   L +D+ + ++L+ M  +CG V  A Q F       +G
Sbjct: 239 FTTPSMLDEGKRIHKLTVEE--GLNSDIRVGTALVTMCVRCGDVDSAKQAF-------KG 289

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
             ++DVV++ +++    ++G+  E  + Y  M  +G   +   ++++++ACS +  ++ G
Sbjct: 290 TADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG 349

Query: 317 IEYFEWMVHDYKLEPGPEHYS------CLVDLLCRAGELDKAWKLINEMLDR 362
                 ++H +  E G  H S       L+ +  R G+L KA +L   M  R
Sbjct: 350 -----KLIHSHISEDG--HSSDVQIGNALISMYARCGDLPKARELFYTMPKR 394


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/429 (33%), Positives = 230/429 (53%), Gaps = 20/429 (4%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           I  + LM+  + C+   +  +L + ++    +N + +  +IS   +NG    A+  FS M
Sbjct: 331 IVITALMVALSKCKEMDDALSLFSLME--EGKNVVSWTAMISGCLQNGGNDQAVNLFSQM 388

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
              G+  + +   + LT    V    F  ++ A V K+ +  S  VG+AL+D Y KL   
Sbjct: 389 RREGVKPNHFTYSAILTVHYPV----FVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNT 444

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
            DA  +F+ I  K+ +  +A+L+GY +        +L   +   G+  + FT S+++ AC
Sbjct: 445 IDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINAC 504

Query: 198 AG-LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           A   +AAE G+Q HAY I+    L N + + S+L+ MY K G +  A +VF     R   
Sbjct: 505 ASPTAAAEQGKQFHAYAIK--MRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER--- 559

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               D+V W SM+  Y ++G  K+ +++++ M       D V F+ VI+AC+H G V+ G
Sbjct: 560 ----DLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKG 615

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            +YF  M++D+ + P  +HYSC++DL  RAG L+KA  +INEM          ++W  LL
Sbjct: 616 QKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEM----PFPPGATVWRTLL 671

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
            A       ELG+LAA+K + L P +   YV+LSN+YA    W E   +R+LM ++ +KK
Sbjct: 672 GAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKK 731

Query: 437 DVGCSWIEV 445
           + G SWIEV
Sbjct: 732 EPGYSWIEV 740



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 153/339 (45%), Gaps = 17/339 (5%)

Query: 48  PRNPLPF---NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           P  P      N ++  + R+     AL  F  +    +  D   L           D + 
Sbjct: 52  PHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKL 111

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+QV     K G +  V VG++L+D+Y K   ++D   +FDE+  +N V   +LL+GY  
Sbjct: 112 GRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSW 171

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             L+    EL   M   G+  + +T+S ++ A         G QVHA +++        V
Sbjct: 172 NGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPV 231

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F  +SLI +Y + G++  A  VF+      + EI +D V W SM+  Y RNG   EV ++
Sbjct: 232 F--NSLISLYSRLGMLRDARDVFD------KMEI-RDWVTWNSMIAGYVRNGQDLEVFEI 282

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M + G KP  + F +VI +C+   ++ L ++  +               + L+  L 
Sbjct: 283 FNKMQLAGVKPTHMTFASVIKSCASLRELAL-VKLMQCKALKSGFTTDQIVITALMVALS 341

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           +  E+D A  L + M +   G + VS W A++S C   G
Sbjct: 342 KCKEMDDALSLFSLMEE---GKNVVS-WTAMISGCLQNG 376



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 182/420 (43%), Gaps = 43/420 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RN + +  +++ +  NG   Y  + F  M   G+  + Y + + + A  +      G
Sbjct: 154 MGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIG 213

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            QV A V K G+  ++ V ++LI LY++L ++ DA  +FD++ +++ V  N++++GY   
Sbjct: 214 LQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRN 273

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN--- 222
                  E+   M   G+   H T ++++++CA L      R++    + +C  L +   
Sbjct: 274 GQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASL------RELALVKLMQCKALKSGFT 327

Query: 223 -DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            D  + ++L+    KC  +  AL +F+L       E  K+VV WT+M+    +NG   + 
Sbjct: 328 TDQIVITALMVALSKCKEMDDALSLFSLM------EEGKNVVSWTAMISGCLQNGGNDQA 381

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISA--------------------CSHTGQ------VKL 315
           + L+  M   G KP+   +  +++                      S  G       VKL
Sbjct: 382 VNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKL 441

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G       V +         +S ++    + GE ++A KL ++++  G   +  +    +
Sbjct: 442 GNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVI 501

Query: 376 LSACHDCGKFELGKLAAQKALELDPHN-VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
            +        E GK     A+++  +N + +   L  +YAK    D   ++ +  KE+ L
Sbjct: 502 NACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDL 561


>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
 gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
          Length = 648

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 134/396 (33%), Positives = 213/396 (53%), Gaps = 14/396 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N V+++   +G P+  ++ +  +   G   +  ++C+   A   +     G+Q 
Sbjct: 183 RNVVAWNAVMTNAVLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLGEQF 242

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K G+   V V ++++D Y K   +  A L+FD + V+NSV   +++  Y +    
Sbjct: 243 HGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAE 302

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                +       G +   F +S+LL  CAGL   + GR +HA   R C +   ++F+ S
Sbjct: 303 EEAFLVYLGARRAGEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAARSCIDA--NIFVAS 360

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MYGKCG +  A QVF     R       ++V W +M+G Y   G     + +++ M
Sbjct: 361 ALVDMYGKCGGIQDAEQVFFEMPQR-------NLVTWNAMIGGYAHIGDAWNALAVFDEM 413

Query: 289 LM-NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           +M   T P+ +  V V++ACS  G  K G E F+ M   + +EP  EHY+C+VDLL RAG
Sbjct: 414 IMGRETAPNYITIVNVLTACSRGGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLLGRAG 473

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
             ++A+++I  M  R     S+S+WGALL  C   GK ELG++AA+K  ELDP + G +V
Sbjct: 474 MEEQAYEIIQGMPMR----PSISVWGALLGGCKMHGKTELGRVAAEKLFELDPQDSGNHV 529

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           +LSN+ A    W E   +R+ MK  G+KKD G SWI
Sbjct: 530 LLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWI 565



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 161/367 (43%), Gaps = 34/367 (9%)

Query: 25  LPYTTCRHKKNLGT---LTNCLKFLNPRNPLP----FNVVISDFCRNGSPLYALKTFSFM 77
           LP   C H  NL +   L          +P P    +   IS   ++  PL AL  F+ M
Sbjct: 47  LPPFICAHLVNLYSKLDLPGAAAAALAADPSPTVVSYTAFISGAAQHARPLQALSAFAAM 106

Query: 78  HVHGIFLDTYALCSSLTASTSVKD---ARFGKQVQAHVTKSGWLSS-VFVGSALIDLYAK 133
              G+  + +   S+  A+ S      A  G QV A   + G+L    FV  A +D+Y K
Sbjct: 107 LRLGLRPNDFTFPSAFKAAASAPPRCAAAVGPQVHALALRFGYLPDDAFVSCAALDMYFK 166

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR----LMPALGLDYDHFT 189
              +  A  +FDE+P +N V  NA+++    A L    +E V     L  A G+  +  +
Sbjct: 167 TGRLALARRLFDEMPNRNVVAWNAVMT---NAVLDGRPIETVEAYFGLRGAGGMP-NVVS 222

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           + A   ACAG++    G Q H ++ +  C    DV + +S+++ YGKC  + KA  VF+ 
Sbjct: 223 VCAFFNACAGMTCLSLGEQFHGFVAK--CGFDKDVSVSNSMVDFYGKCRCMGKARLVFDG 280

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
            G R       + V W SM+  Y +NG  +E   +Y      G +P +    ++++ C+ 
Sbjct: 281 MGVR-------NSVSWCSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTCAG 333

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
              + LG      +     ++      S LVD+  + G +  A ++  EM  R     ++
Sbjct: 334 LLGLDLG-RALHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQR-----NL 387

Query: 370 SMWGALL 376
             W A++
Sbjct: 388 VTWNAMI 394


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 205/370 (55%), Gaps = 19/370 (5%)

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G+  D +   S +   +S     F +Q    +T+    S     +A+I   AK  +IH A
Sbjct: 90  GLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPS----WNAIIHANAKAGMIHIA 145

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL---GLDYDHFTLSALLRAC 197
             +FD++P KN +  + ++ GY     +   L L R +  L    L  + FT+S++L AC
Sbjct: 146 RKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSAC 205

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A L A + G+ VHAY+ +    +  DV + +SLI+MY KCG + +A  +F+  G      
Sbjct: 206 ARLGALQHGKWVHAYIDKTGMKI--DVVLGTSLIDMYAKCGSIERAKCIFDNLGPE---- 259

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
             KDV+ W++M+  +  +G  +E ++L+  M+ +G +P+ V FV V+ AC H G V  G 
Sbjct: 260 --KDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGN 317

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           EYF+ M+++Y + P  +HY C+VDL  RAG ++ AW ++  M         V +WGALL+
Sbjct: 318 EYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSM----PMEPDVMIWGALLN 373

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
                G  E  ++A  K LELDP N   YV+LSN+YAK   W E+  LR+LM+ +G+KK 
Sbjct: 374 GARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKL 433

Query: 438 VGCSWIEVTG 447
            GCS +EV G
Sbjct: 434 PGCSLVEVDG 443


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 142/438 (32%), Positives = 230/438 (52%), Gaps = 40/438 (9%)

Query: 33  KKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           KK +         +  R+ + +N +I+ + +NG    A + F    VH +F  T A+ S 
Sbjct: 227 KKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWT-AMVSG 285

Query: 93  LTASTSVKDAR--FGK-----QVQAHVTKSGWLS-----------------SVFVGSALI 128
              +  V++AR  F +     +V  +   +G++                  +V   + +I
Sbjct: 286 YIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMI 345

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
             YA+   I +A+ +FD++P ++ V   A+++GY ++      L L  LM   G   +  
Sbjct: 346 TGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRS 405

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF- 247
           + S+ L  CA + A E G+Q+H  +++     G   F+ ++L+ MY KCG + +A  +F 
Sbjct: 406 SFSSALSTCADVVALELGKQLHGRLVKGGYETG--CFVGNALLLMYCKCGSIEEANDLFK 463

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
            +AG        KD+V W +M+  Y R+G+ +E ++ +E+M   G KPD+   V V+SAC
Sbjct: 464 EMAG--------KDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSAC 515

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           SHTG V  G +YF  M  DY + P  +HY+C+VDLL RAG L++A  L+  M        
Sbjct: 516 SHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNM----PFEP 571

Query: 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRE 427
             ++WG LL A    G  EL + AA K   ++P N G+YV+LSNLYA    W ++G+LR 
Sbjct: 572 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 631

Query: 428 LMKEKGLKKDVGCSWIEV 445
            M++KG+KK  G SWIE+
Sbjct: 632 RMRDKGVKKVPGYSWIEI 649



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 159/416 (38%), Gaps = 82/416 (19%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLP---------FNVVISDFCRNGSPLYALKTFSFMH---- 78
           H     T T   K  +   PLP         +NV IS + R G    AL+ F  M     
Sbjct: 33  HSSKSSTQTQIQK--SQTKPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSS 90

Query: 79  -VHGIFLDTYALCSSLTASTSVKDARFGKQ-VQAHVTKSGWLSSVFVGSA---------- 126
             +   +  Y        +  + D    +  V  +V   G++ +  +G A          
Sbjct: 91  VSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPER 150

Query: 127 -------LIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
                  ++  YA+   + DA  +FD +P KN V  NALLS Y +         L     
Sbjct: 151 DVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRE 210

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
              L   +  L   ++    + A +F     +  +R       DV   +++I  Y + G 
Sbjct: 211 NWALVSWNCLLGGFVKKKKIVEARQF---FDSMKVR-------DVVSWNTIITGYAQNGE 260

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           + +A Q+F+      E  ++ DV  WT+M+  Y +N   +E  +L++ M     + +EV+
Sbjct: 261 IDEARQLFD------ESPVH-DVFTWTAMVSGYIQNRMVEEARELFDRM----PERNEVS 309

Query: 300 FVTVISACSHTGQVKLGIEYFEWM--------------------------VHDYKLEPGP 333
           +  +++      +V++  E F+ M                          + D   +  P
Sbjct: 310 WNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 369

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
             ++ ++    ++G   +A +L   +++R  G  + S + + LS C D    ELGK
Sbjct: 370 VSWAAMIAGYSQSGHSYEALRLF-VLMEREGGRLNRSSFSSALSTCADVVALELGK 424



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 121/303 (39%), Gaps = 54/303 (17%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           +A+I  Y +      A ++FDE+P ++ V  N ++ GY   +      EL   MP    +
Sbjct: 94  NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMP----E 149

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D  + + +L   A     +  R+V   M  K     NDV   ++L+  Y +   + +A 
Sbjct: 150 RDVCSWNTILSGYAQNGCVDDARRVFDRMPEK-----NDVSW-NALLSAYVQNSKLEEAC 203

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            +F   G R     N  +V W  +LG + +     E  + +++M +     D V++ T+I
Sbjct: 204 VLF---GSRE----NWALVSWNCLLGGFVKKKKIVEARQFFDSMKVR----DVVSWNTII 252

Query: 305 SACSHTGQVKLGIEYF-EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
           +  +  G++    + F E  VHD         ++ +V    +   +++A +L + M +R 
Sbjct: 253 TGYAQNGEIDEARQLFDESPVHDVFT------WTAMVSGYIQNRMVEEARELFDRMPERN 306

Query: 364 HGS--------------------------SSVSMWGALLSACHDCGKFELGKLAAQKALE 397
             S                           +VS W  +++    CGK    K    K  +
Sbjct: 307 EVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPK 366

Query: 398 LDP 400
            DP
Sbjct: 367 RDP 369


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/437 (31%), Positives = 235/437 (53%), Gaps = 46/437 (10%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSSLTASTSVKD 101
            + L+ R+ + +N +I+   ++G    AL+ FS  +    +  D ++L S+L+A  +++ 
Sbjct: 196 FELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEK 255

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK---------------------------- 133
             FGKQ+  ++ ++ + +S  VG+ALI +YAK                            
Sbjct: 256 LSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALL 315

Query: 134 -----LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
                L  I  A  +F+ +   + V   A++ GY +  L    +E+ + M + G   + F
Sbjct: 316 NGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSF 375

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           TL+A+L A + +++   G+Q+HA  IR    L   V   ++L  MY K G +  A +VFN
Sbjct: 376 TLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSV--GNALTTMYAKAGSINGARKVFN 433

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           L         N+D V WTSM+    ++G  +E I+L+E ML  G KPD + +V V+SAC+
Sbjct: 434 LLRQ------NRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACT 487

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
           H G V+ G  YF+ M + +K++P   HY+C+VDL  RAG L +A+K +  M         
Sbjct: 488 HGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENM----PMEPD 543

Query: 369 VSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLREL 428
           V  WG+LLS+C      +L K+AA++ L ++P+N G Y  L+N+Y+    WD+  ++R+L
Sbjct: 544 VIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKL 603

Query: 429 MKEKGLKKDVGCSWIEV 445
           MK +G+KK+ G SW+++
Sbjct: 604 MKARGVKKEQGLSWVQI 620



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 176/429 (41%), Gaps = 81/429 (18%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I  + + G    A+K F  M    +    + L + L +  +      GK+V
Sbjct: 70  RDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKV 129

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC---EA 165
            + V K G  + V V ++L+++YAK   +  A+++FD + ++N+   NA++S +      
Sbjct: 130 HSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRV 189

Query: 166 KLWAGGLELV-----------------------------RLMPALGLDYDHFTLSALLRA 196
            L     EL+                              ++    L  D F+L++ L A
Sbjct: 190 DLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSA 249

Query: 197 CAGLSAAEFGRQVHAYMIRKCCN----LGN---------------------------DVF 225
           CA L    FG+Q+H Y++R   +    +GN                           DV 
Sbjct: 250 CANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVI 309

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
             ++L+  Y K G +T A Q+FN          + DVV WT+M+  Y +NG   + I+++
Sbjct: 310 AFTALLNGYVKLGDITPARQIFNSLK-------DPDVVAWTAMIVGYVQNGLNNDAIEVF 362

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVD 341
           + M+  G +P+      ++SA S    +  G +     +H   +  G    P   + L  
Sbjct: 363 KTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQ-----IHASAIRSGEALSPSVGNALTT 417

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           +  +AG ++ A K+ N +       S  SM  AL  A H  G+  +        L + P 
Sbjct: 418 MYAKAGSINGARKVFNLLRQNRDTVSWTSMIMAL--AQHGLGEEAIELFEQMLTLGIKPD 475

Query: 402 NVGIYVMLS 410
           ++    +LS
Sbjct: 476 HITYVGVLS 484



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 160/395 (40%), Gaps = 66/395 (16%)

Query: 36  LGTLTNCLKFLNP-RNP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           LG +T   +  N  ++P  + +  +I  + +NG    A++ F  M   G   +++ L + 
Sbjct: 321 LGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAM 380

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV-KN 151
           L+AS+SV     GKQ+ A   +SG   S  VG+AL  +YAK   I+ A  +F+ +   ++
Sbjct: 381 LSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRD 440

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           +V   +++    +  L    +EL   M  LG+  DH T   +L AC      E GR    
Sbjct: 441 TVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFD 500

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            M +    +   +   + +++++G+ GL+                               
Sbjct: 501 LM-KNVHKIDPTLSHYACMVDLFGRAGLL------------------------------- 528

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
                  +E  K  E M M   +PD +A+ +++S+C     V L     E ++    +EP
Sbjct: 529 -------QEAYKFVENMPM---EPDVIAWGSLLSSCKVYKNVDLAKVAAERLL---LIEP 575

Query: 332 GPE-HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
                YS L ++    G+ D A K+   M  RG        W  + +  H  G  E G  
Sbjct: 576 NNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFG-VEDG-- 632

Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQL 425
                  L P    IY M+  +      W EI ++
Sbjct: 633 -------LHPQKDEIYKMMDKI------WKEIKKM 654



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 135/307 (43%), Gaps = 67/307 (21%)

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           + K G   SV++ + L++LYAK     DA  +F+E+PVK +   N +LSGY +       
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 172 LELVRLMP----------------------ALGLDYD---------HFTLSALLRACAGL 200
            ++  L+P                      A+ +  D          FTL+ +L +CA  
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 201 SAAEFGRQVHAYMIR----KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF--------- 247
            +   G++VH+++++     C  + N      SL+ MY K G +  A  VF         
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVAN------SLLNMYAKTGDLKMAKVVFDRMKLRNTS 174

Query: 248 ---------------NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
                          +LA  + E    +D+V W SM+    ++G+  E ++ + ++L + 
Sbjct: 175 SWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDT 234

Query: 293 T-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           + KPD  +  + +SAC++  ++  G +   ++V     +      + L+ +  ++G ++ 
Sbjct: 235 SLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTM-FDASGAVGNALISMYAKSGGVEI 293

Query: 352 AWKLINE 358
           A ++I +
Sbjct: 294 ARRIIEQ 300



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 90/193 (46%), Gaps = 38/193 (19%)

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEINK---------- 260
           V++ ++L+ +Y K G    A  +FN             L+G+  +G++ K          
Sbjct: 10  VYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPV 69

Query: 261 -DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
            D V WT+++  Y + G F++ IK++  M+ +   P +     V+++C+ TG   +G + 
Sbjct: 70  RDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKK- 128

Query: 320 FEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
               VH + ++ G        + L+++  + G+L  A  + + M  R     + S W A+
Sbjct: 129 ----VHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR-----NTSSWNAM 179

Query: 376 LSACHDCGKFELG 388
           +S   +CG+ +L 
Sbjct: 180 ISLHMNCGRVDLA 192


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 138/404 (34%), Positives = 211/404 (52%), Gaps = 13/404 (3%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           K+    N    N +I  +      L +L  F+ MH   I  D+    + L A+  + D  
Sbjct: 47  KYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTG 106

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            GK +   V + G++  V+  +AL+ LY   L I DA  +FDE+P +N+V  NAL++GY 
Sbjct: 107 VGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYT 166

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
             + +   ++  R M A G      T+  +L AC+ L A   G+ +H ++      L  +
Sbjct: 167 HNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRL--N 224

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           VF+ ++LI+MY KCG V +  +VF       E    K+V  W  ++  Y  NG     ++
Sbjct: 225 VFVGTALIDMYAKCGAVYEVEKVF-------EEIREKNVYTWNVLISGYAMNGQGDAALQ 277

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
            +  MLM   KPDEV F+ V+ AC H G V  G   F  M   + L+P  EHY C+VDLL
Sbjct: 278 AFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLL 337

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            RAG L++A +LI  M           +W ALL AC   G  +LG+   ++ +EL+P+N 
Sbjct: 338 GRAGLLEEALELIQSM----SIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNG 393

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             YV+LSN+Y++   W E+G+LR +M  +G++K  GCS IE+  
Sbjct: 394 ENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINN 437


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 221/396 (55%), Gaps = 15/396 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +N +IS +C+NG+   AL     M + G+ +D   + S L     V D   GK +
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +V K G    +FV +ALI++YAK   +  A+ +F  + +K+ V  N L++GY +  L 
Sbjct: 118 HLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFG-LLIKDVVSWNTLITGYAQNGLA 176

Query: 169 AGGLELVRLMPA-LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +  +E+  LM     +  +  T  ++L A + + A + G ++H  +I+ C  L +DVF+ 
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNC--LYSDVFVG 234

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           + LI+MYGKCG +  A+ +F            K+ V W +M+  YG +G  ++ ++L+  
Sbjct: 235 TCLIDMYGKCGKLDDAISLFYQVPR-------KNSVPWNAMISCYGVHGDGEKALELFRE 287

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M     KPD + FV+++SACSH+G V      F  M  +Y ++P  +HY C+VDL  RAG
Sbjct: 288 MKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAG 347

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           EL+ A+  I +M  +       S WGALL+AC   G  ELGK A+++  E+D  NVG YV
Sbjct: 348 ELEMAFNFIKKMPIQ----PDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYV 403

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           +LSN+YA    W+ +  +R L +++GL+K+ G S I
Sbjct: 404 LLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSI 439



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 163/311 (52%), Gaps = 23/311 (7%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK++   V K G+   VFV ++L+ +Y++  L+ DA  +FD++P ++    NA++SGYC+
Sbjct: 13  GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQ 72

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
               A  L++   M   G+  D  T++++L  CA +     G+ +H Y+I+    L  ++
Sbjct: 73  NGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKH--GLEFEL 130

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++LI MY K G +  A +VF L        + KDVV W +++  Y +NG   E I++
Sbjct: 131 FVSNALINMYAKFGSLGHAQKVFGL--------LIKDVVSWNTLITGYAQNGLASEAIEV 182

Query: 285 YEAMLMNGTK---PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           Y  +LM   +   P++  +V+++ A SH G ++ G+     ++ +  L       +CL+D
Sbjct: 183 Y--LLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNC-LYSDVFVGTCLID 239

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELD 399
           +  + G+LD A  L  ++  +    +SV  W A++S    H  G+  L      KA  + 
Sbjct: 240 MYGKCGKLDDAISLFYQVPRK----NSVP-WNAMISCYGVHGDGEKALELFREMKAERVK 294

Query: 400 PHNVGIYVMLS 410
           P ++    +LS
Sbjct: 295 PDHITFVSLLS 305


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 144/431 (33%), Positives = 218/431 (50%), Gaps = 48/431 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N ++S   R+G  L A+     MH  G F D   +  +L+A   VK+   GKQV 
Sbjct: 117 NVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVH 176

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG------YC 163
            +V K+G      V +ALID+Y K     +   +F E    +    NAL++G        
Sbjct: 177 GYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVS 236

Query: 164 EAKL----------------WAG-------------GLELVRLMPALGLDYDHFTLSALL 194
           EA L                W                ++L R M ++G++ +  T+  +L
Sbjct: 237 EALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVL 296

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            A A ++A   GR  H + +RK     +DV++ S+L++MY KCG    A  +F+    R 
Sbjct: 297 PAFANVAALMHGRSAHCFSLRK--GFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSR- 353

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                 +VV W +M+G Y  +G     ++L+ +M     KPD V F  V+ ACS  G  +
Sbjct: 354 ------NVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTE 407

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G  YF  M   + + P  EHY+C+V LL R+G+LD+A+ LINEM           +WG+
Sbjct: 408 EGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEM----PFEPDSCIWGS 463

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL +C   G   L ++AA+K  +L+P N G YV+LSN+YA   MWD + ++R+ MK  GL
Sbjct: 464 LLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGL 523

Query: 435 KKDVGCSWIEV 445
           KK+ GCSWIE+
Sbjct: 524 KKEKGCSWIEI 534



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 50/292 (17%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D + L S+L +  +   AR    + A    SG     FV S+L+  Y +L     A  +F
Sbjct: 19  DPHLLPSALKSCPAQPLAR---ALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVF 75

Query: 145 DEIPVKNSVCANALLSGY-----CEA------KLWAGGLE-------------------- 173
           D +P KN V  +AL++GY      EA      ++ + G+E                    
Sbjct: 76  DRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRAL 135

Query: 174 -----LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                LVR M + G   D   +S  L A   +     G+QVH Y+++  C L  D  + +
Sbjct: 136 DAVTALVR-MHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRL--DACVVT 192

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MYGKCG   + ++VF+ + H        DV    +++    RN    E + L+   
Sbjct: 193 ALIDMYGKCGRADEIVRVFHESSH-------MDVASCNALVAGLSRNAQVSEALLLFREF 245

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
           +  G + + V++ ++++ C   G+    ++ F  M     +EP      C++
Sbjct: 246 ICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTM-QSIGVEPNSVTIPCVL 296


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 138/412 (33%), Positives = 219/412 (53%), Gaps = 14/412 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G        L  RN + +N +I+ +    +   AL  F  M   G   D Y   SSL A
Sbjct: 55  VGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKA 114

Query: 96  STSVKDARFGKQVQAHVTKSG--WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            +    A  G Q+ A + + G  +L+   V  AL+DLY K   + +A  +FD I  K+ +
Sbjct: 115 CSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVM 174

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             + L+ GY +       ++L R +       D F LS+++   A  +  E G+Q+HAY 
Sbjct: 175 SWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYT 234

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           I+    L  ++ + +S+++MY KCGL  +A  +F          + ++VV WT M+  YG
Sbjct: 235 IKVPYGL-LEMSVANSVLDMYMKCGLTVEADALFREM-------LERNVVSWTVMITGYG 286

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           ++G   + ++L+  M  NG +PD V ++ V+SACSH+G +K G +YF  +  + K++P  
Sbjct: 287 KHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKV 346

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHY+C+VDLL R G L +A  LI +M  +     +V +W  LLS C   G  E+GK   +
Sbjct: 347 EHYACMVDLLGRGGRLKEAKNLIEKMPLK----PNVGIWQTLLSVCRMHGDVEMGKQVGE 402

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             L  + +N   YVM+SN+YA    W E  ++RE +K KGLKK+ G SW+E+
Sbjct: 403 ILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVEM 454



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 146/316 (46%), Gaps = 39/316 (12%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GKQV   V K G+     VG+++ID+Y+K  ++ +A  +F+ +PV+N +  NA+++GY  
Sbjct: 23  GKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTN 82

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            +     L L R M   G   D +T S+ L+AC+   AA  G Q+HA +IR         
Sbjct: 83  ERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQS 142

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            +  +L+++Y KC  + +A +VF+    R+E    K V+ W++++  Y +    KE + L
Sbjct: 143 AVAGALVDLYVKCRRMAEARKVFD----RIE---EKSVMSWSTLILGYAQEDNLKEAMDL 195

Query: 285 YEAMLMNGTKPDEVAFVTVISACS-----------HTGQVKLGIEYFEWMVHDY------ 327
           +  +  +  + D     ++I   +           H   +K+     E  V +       
Sbjct: 196 FRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYM 255

Query: 328 --------------KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
                          LE     ++ ++    + G  +KA +L NEM + G    SV+ + 
Sbjct: 256 KCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVT-YL 314

Query: 374 ALLSACHDCGKFELGK 389
           A+LSAC   G  + GK
Sbjct: 315 AVLSACSHSGLIKEGK 330


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 138/395 (34%), Positives = 219/395 (55%), Gaps = 15/395 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +IS +  N     +++ F  + V G  +++ ++   +            + +   
Sbjct: 274 VSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGF 333

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
            TKSG +S+  V +AL  +Y++L  I  A L+FDE   K+    NA++SGY +  L    
Sbjct: 334 CTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKA 393

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           + L + M    +  +  T++++L ACA L A   G+ VH  + R+  +  +++F+ ++LI
Sbjct: 394 ISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRE--SFESNIFVSTALI 451

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KCG +T+A ++F++          K+ V W +M+  YG +GY  E + L+  ML +
Sbjct: 452 DMYAKCGSITEAQRLFSMMPE-------KNAVTWNAMISGYGLHGYGHEALNLFNEMLHS 504

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
              P  V F++V+ ACSH G V+ G E F  MVHD+  EP PEHY+C+VDLL RAG LDK
Sbjct: 505 RVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDK 564

Query: 352 AWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           A   I +M ++ G       +WGALL AC       L +LA+ K  ELDP NVG YV+LS
Sbjct: 565 ALDFIRKMPVEPG-----PPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLS 619

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           N+Y+    + E   +R ++K + L K  GC+ IEV
Sbjct: 620 NIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEV 654



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 146/329 (44%), Gaps = 15/329 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++S   +N     A+  F  M   GI  D+  + + L     ++D   G  +
Sbjct: 170 RDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGI 229

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           Q    K G+ S  +V + L  LY+K   I  A L+F +I   + V  NA++SGY      
Sbjct: 230 QCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNET 289

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + L + +   G   +  ++  L+            R +H +  +    + ++  + +
Sbjct: 290 ESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKS--GVVSNSSVST 347

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L  +Y +   +  A  +F+ +         K +  W +M+  Y +NG  ++ I L++ M
Sbjct: 348 ALTTVYSRLNEIESARLLFDESSE-------KSLASWNAMISGYAQNGLTEKAISLFQEM 400

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                +P+ V   +++SAC+  G + LG ++   +++    E      + L+D+  + G 
Sbjct: 401 QKCEVRPNPVTVTSILSACAQLGALSLG-KWVHDLINRESFESNIFVSTALIDMYAKCGS 459

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + +A +L + M ++     +   W A++S
Sbjct: 460 ITEAQRLFSMMPEK-----NAVTWNAMIS 483



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 170/416 (40%), Gaps = 55/416 (13%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLD---TYALCSSLTASTSVKDARFGKQVQA 110
           +NV+I  F  N SP  A+  ++ +           TYA   S  +S  +        + A
Sbjct: 76  YNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVA 135

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
                G+ S +FVGSA++  Y K   +  A  +FD +  +++V  N ++SG  +   +  
Sbjct: 136 -----GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDE 190

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            + +   M   G+ +D  T++A+L   A L     G  +    ++      +  ++ + L
Sbjct: 191 AILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMK--VGFHSHAYVITGL 248

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
             +Y KCG +  A  +F   G         D+V + +M+  Y  N   +  ++L++ +L+
Sbjct: 249 ACLYSKCGEIETARLLFGQIGQ-------PDLVSYNAMISGYTCNNETESSVRLFKELLV 301

Query: 291 NGTKPDEVAFVTVI-----------SACSH-------------------TGQVKLGIEYF 320
           +G K +  + V +I           + C H                   T   +L     
Sbjct: 302 SGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIES 361

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
             ++ D   E     ++ ++    + G  +KA  L  EM       + V++  ++LSAC 
Sbjct: 362 ARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVT-SILSACA 420

Query: 381 DCGKFELGK----LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
             G   LGK    L  +++ E    N+ +   L ++YAK     E  +L  +M EK
Sbjct: 421 QLGALSLGKWVHDLINRESFE---SNIFVSTALIDMYAKCGSITEAQRLFSMMPEK 473


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 138/404 (34%), Positives = 211/404 (52%), Gaps = 13/404 (3%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           K+    N    N +I  +      L +L  F+ MH   I  D+    + L A+  + D  
Sbjct: 47  KYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTG 106

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            GK +   V + G++  V+  +AL+ LY   L I DA  +FDE+P +N+V  NAL++GY 
Sbjct: 107 VGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYT 166

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
             + +   ++  R M A G      T+  +L AC+ L A   G+ +H ++      L  +
Sbjct: 167 HNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRL--N 224

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           VF+ ++LI+MY KCG V +  +VF       E    K+V  W  ++  Y  NG     ++
Sbjct: 225 VFVGTALIDMYAKCGAVYEVEKVF-------EEIREKNVYTWNVLISGYAMNGQGDAALQ 277

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
            +  MLM   KPDEV F+ V+ AC H G V  G   F  M   + L+P  EHY C+VDLL
Sbjct: 278 AFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLL 337

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            RAG L++A +LI  M           +W ALL AC   G  +LG+   ++ +EL+P+N 
Sbjct: 338 GRAGLLEEALELIQSM----SIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNG 393

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             YV+LSN+Y++   W E+G+LR +M  +G++K  GCS IE+  
Sbjct: 394 ENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINN 437


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 143/440 (32%), Positives = 242/440 (55%), Gaps = 25/440 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +   S L+  Y+ C   ++  TL      ++ RN + +  +I+ + +N     AL  F  
Sbjct: 187 LFVSSALVDMYSKCGELRDARTL---FDEISHRNIVSWTSMITGYVQNDDAHRALLLFKE 243

Query: 77  MHVHG--------IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
             V          + +D  A+ S L+A + V +    + V   + K G+   + V + L+
Sbjct: 244 FLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLM 303

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG-LDYDH 187
           D YAK   +  +  +FD +  ++ +  N++++ Y +  +    +E+   M   G ++Y+ 
Sbjct: 304 DAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA 363

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
            TLSA+L ACA   +   G+ +H  +I+    L ++VF+ +S+I+MY KCG V  A + F
Sbjct: 364 VTLSAVLLACAHSGSQRLGKCIHDQVIK--MGLESNVFVGTSIIDMYCKCGKVEMARKAF 421

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
           +    R+     K+V  W++M+  YG +G+ KE ++++  M M G KP+ + FV+V++AC
Sbjct: 422 D----RMR---EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAAC 474

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           SH G ++ G  +F+ M H++ +EPG EHY C+VDLL RAG L +A+ LI  M  R     
Sbjct: 475 SHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLR----P 530

Query: 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRE 427
              +WGALL AC      +LG+++A+K  ELDP N G YV+LSN+YA    W+++ ++R 
Sbjct: 531 DFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRI 590

Query: 428 LMKEKGLKKDVGCSWIEVTG 447
           LMK  GL K  G S +++ G
Sbjct: 591 LMKNSGLVKPPGFSLVDIKG 610



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 180/357 (50%), Gaps = 34/357 (9%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           NL TL N  K+++  N   +N VI++  R+G  + AL+ FS M    +  +      ++ 
Sbjct: 103 NLTTLFN--KYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIK 160

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           + +++ D   G+Q        G+   +FV SAL+D+Y+K   + DA  +FDEI  +N V 
Sbjct: 161 SCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVS 220

Query: 155 ANALLSGYCEAKLWAGGLELVR--LMPALGLD------YDHFTLSALLRACAGLSAAEFG 206
             ++++GY +       L L +  L+   G +       D   + ++L AC+ +S     
Sbjct: 221 WTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSIT 280

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
             VH ++I++      D+ ++++L++ Y KCG +  + +VF+       G   +DV+ W 
Sbjct: 281 EGVHGFLIKR--GFEGDLGVENTLMDAYAKCGELGVSRRVFD-------GMAERDVISWN 331

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           S++ VY +NG   E ++++  M+ +G    + V    V+ AC+H+G  +LG       +H
Sbjct: 332 SIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGK-----CIH 386

Query: 326 DYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           D  ++ G E      + ++D+ C+ G+++ A K  + M ++     +V  W A+++ 
Sbjct: 387 DQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREK-----NVKSWSAMVAG 438


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 142/391 (36%), Positives = 215/391 (54%), Gaps = 13/391 (3%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS +  +G  + A+ TF ++   G+  ++  + S L A  ++   + GK++   + K  
Sbjct: 419 MISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQ 478

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
             + V VGSA+ D+YAK   +  A   F  +   +S+C N+++S + +       ++L R
Sbjct: 479 LENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFR 538

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M   G  +D  +LS+ L + A L A  +G+++H Y+IR      +D F+ S+LI+MY K
Sbjct: 539 QMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNA--FSSDTFVASALIDMYSK 596

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG +  A  VFNL          K+ V W S++  YG +G  +E + L+  ML  G  PD
Sbjct: 597 CGKLALARCVFNLMA-------GKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPD 649

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
            V F+ +ISAC H G V  GI YF  M  +Y +    EHY+C+VDL  RAG L +A+  I
Sbjct: 650 HVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAI 709

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
             M      +    +WG LL AC   G  EL KLA++  LELDP N G YV+LSN++A  
Sbjct: 710 KSM----PFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADA 765

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             W  + ++R LMKEKG++K  G SWI+V G
Sbjct: 766 GEWGSVLKVRRLMKEKGVQKIPGYSWIDVNG 796



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 155/358 (43%), Gaps = 15/358 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VH      G+  +C +   SR++  Y  C    + G L   L+  N    LP+N +I  
Sbjct: 65  QVHTQIIVGGMSDVCAL--SSRVLGLYVLCGRISDGGNLFFGLELCNA---LPWNWMIRG 119

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
               G   +AL  +  M    +  D Y     + A   + +      V       G+   
Sbjct: 120 LYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVD 179

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +FVGSALI LYA    I DA  +FDE+P ++++  N +L GY ++  +   +     M  
Sbjct: 180 LFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRT 239

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
                +  T + +L  CA       G QVH  +I        D  + ++L+ MY KCG +
Sbjct: 240 SYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEF--DPQVANTLVAMYSKCGNL 297

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A ++FN            D V W  ++  Y +NG+  E   L+ AM+  G KPD V F
Sbjct: 298 FDARKLFNTMPQ-------TDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTF 350

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            + + +   +G ++   E   ++V  +++       S L+D+  + G+++ A K+  +
Sbjct: 351 ASFLPSILESGSLRHCKEVHSYIVR-HRVPFDVYLKSALIDIYFKGGDVEMARKIFQQ 407



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 179/379 (47%), Gaps = 20/379 (5%)

Query: 37  GTLTNCLKFLN--PR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G L +  K  N  P+ + + +N +I+ + +NG    A   F+ M   G+  D+    S L
Sbjct: 295 GNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFL 354

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            +       R  K+V +++ +      V++ SALID+Y K   +  A  +F +  + +  
Sbjct: 355 PSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVA 414

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
              A++SGY    L    +   R +   G+  +  T++++L ACA L+A + G+++H  +
Sbjct: 415 VCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDI 474

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           ++K   L N V + S++ +MY KCG +  A + F     R+      D + W SM+  + 
Sbjct: 475 LKK--QLENIVNVGSAITDMYAKCGRLDLAYEFF----RRMS---ETDSICWNSMISSFS 525

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           +NG  +  + L+  M M+G K D V+  + +S+ ++   +  G E   +++ +       
Sbjct: 526 QNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRN-AFSSDT 584

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLA 391
              S L+D+  + G+L  A  + N M     G + VS W ++++A   H C +  L    
Sbjct: 585 FVASALIDMYSKCGKLALARCVFNLMA----GKNEVS-WNSIIAAYGNHGCARECLDLFH 639

Query: 392 AQKALELDPHNVGIYVMLS 410
                 + P +V   V++S
Sbjct: 640 EMLRAGVHPDHVTFLVIIS 658



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 138/324 (42%), Gaps = 50/324 (15%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + ++  + + +N +IS F +NG P  A+  F  M + G   D+ +L S+L+++ ++   
Sbjct: 506 FRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPAL 565

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
            +GK++  +V ++ + S  FV SALID+Y+K   +  A  +F+ +  KN V  N++++ Y
Sbjct: 566 YYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAY 625

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                    L+L   M   G+  DH T   ++ AC                         
Sbjct: 626 GNHGCARECLDLFHEMLRAGVHPDHVTFLVIISAC------------------------- 660

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
                       G  GLV + +  F+      E  I   +  +  M+ +YGR G   E  
Sbjct: 661 ------------GHAGLVGEGIHYFHCMTR--EYGIGARMEHYACMVDLYGRAGRLHEAF 706

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE---HYSCL 339
              ++M      PD   + T++ AC   G V+L       +   + LE  P+   +Y  L
Sbjct: 707 DAIKSMPFT---PDAGVWGTLLGACRLHGNVELAK-----LASRHLLELDPKNSGYYVLL 758

Query: 340 VDLLCRAGELDKAWKLINEMLDRG 363
            ++   AGE     K+   M ++G
Sbjct: 759 SNVHADAGEWGSVLKVRRLMKEKG 782



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 106/284 (37%), Gaps = 58/284 (20%)

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
           DY    L +L RAC+  S  +  RQVH  +I     + +   + S ++ +Y  CG ++  
Sbjct: 41  DYLTTQLESLFRACSDASVVQQARQVHTQII--VGGMSDVCALSSRVLGLYVLCGRISD- 97

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
                  G+   G    + + W  M+      G+F   +  Y  ML +   PD+  F  V
Sbjct: 98  ------GGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYV 151

Query: 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-----SCLVDLLCRAGELDKAWKLINE 358
           I AC     V L +     +VH+     G  H      S L+ L    G +  A ++ +E
Sbjct: 152 IKACGGLNNVPLCM-----VVHNTARSLG-FHVDLFVGSALIKLYADNGYICDARRVFDE 205

Query: 359 MLDRG--------HG-----------------SSSVSM-----WGALLSACHDCGKFELG 388
           +  R         HG                  +S SM     +  +LS C   GKF LG
Sbjct: 206 LPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLG 265

Query: 389 K----LAAQKALELDPHN----VGIYVMLSNLYAKFCMWDEIGQ 424
                L      E DP      V +Y    NL+    +++ + Q
Sbjct: 266 TQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQ 309


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I  + ++   L AL  +  M   G  +D + L S LT  + V+D   G Q 
Sbjct: 204 RDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQF 263

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSGYCEAK- 166
            A   K+G+  +  VGS LID+YAK    + ++  +F+EI   + V  N ++SGY + K 
Sbjct: 264 HAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKE 323

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L    LE  R M   G   D  +    + AC+ LS+   G+Q HA  ++      N + +
Sbjct: 324 LSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIP-SNQISV 382

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L+ MY KCG +  A ++F     R+      + V   S++  Y ++G   E + L+E
Sbjct: 383 NNALVTMYSKCGNLQDARKLF----QRMP---QHNTVTLNSIIAGYAQHGIGTESLNLFE 435

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML     P  +  V+++SAC+HTG+V+ G +YF  M   + +EP  EHYSC++DLL RA
Sbjct: 436 QMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRA 495

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G+L +A +LI+ M      S   + W ALL AC   G  EL + AA + L+L+P N   Y
Sbjct: 496 GKLSEAERLIDTM----PFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPY 551

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +ML+++Y+    W+E  ++R+LM+++G++K  GCSWIE+ 
Sbjct: 552 IMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELN 591



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 124/263 (47%), Gaps = 24/263 (9%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           +VF  +ALI  YAK  LIH A  +FD+IP  + V  N L++ Y +       L L   M 
Sbjct: 73  NVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMR 132

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
            +GL  D FT S ++ AC   +     RQ+H+          + V +++SL+  Y K G+
Sbjct: 133 EMGLVMDGFTFSGVITACC--NHVGLIRQLHSLAFSS--GFDSYVSVKNSLLTYYSKNGI 188

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           + +A  VFN  G  +     +D V W SM+  YG++    + + LY  M+  G + D   
Sbjct: 189 LEEAEMVFNGMGEEV-----RDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFT 243

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHY-SCLVDLLCRAGE-LDKAWK 354
             +V++  S    +  G+++     H   ++ G     H  S L+D+  + G  + ++ K
Sbjct: 244 LASVLTTFSCVEDLSGGLQF-----HAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRK 298

Query: 355 LINEMLDRGHGSSSVSMWGALLS 377
           +  E+       S + +W  ++S
Sbjct: 299 VFEEIC-----GSDLVVWNTMIS 316


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 148/444 (33%), Positives = 234/444 (52%), Gaps = 20/444 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VH++  ++GL+L   +   S L   Y+ C   +   +L   + F   ++   +  +IS 
Sbjct: 293 QVHSYTLKSGLILD--LTVGSSLFTMYSKCGSLEESYSLFQEIPF---KDNACWASMISG 347

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F   G    A+  FS M   G   D   L + LT  +S+      K++  +  ++G    
Sbjct: 348 FNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRG 407

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           + +GSAL++ Y+K   +  A  ++D +P  + V  ++L+SGY +  L   G  L R M  
Sbjct: 408 MPLGSALVNTYSKCGSLKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVM 467

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G   D + +S++L+A      +E G QVHAY+ +    L  +  + SSL+ MY K G +
Sbjct: 468 SGFSMDSYAISSILKAAVLSEESELGAQVHAYITK--IGLCTEPSVGSSLLTMYSKFGSI 525

Query: 241 TKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
               + F+        +IN  D++ WT+++  Y ++G   E +++Y  M   G KPD+V 
Sbjct: 526 EDCCKAFS--------QINGPDLIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVT 577

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           FV V+SACSH G V+ G  +   MV DY +EP   HY C+VD L R+G L +A   IN  
Sbjct: 578 FVGVLSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFINTR 637

Query: 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419
             +        +WG LL+AC   G  ELGKLAA+KA+EL+P + G YV LSN+ A+   W
Sbjct: 638 PIK----PDALVWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAYVSLSNILAEVGEW 693

Query: 420 DEIGQLRELMKEKGLKKDVGCSWI 443
           DE+ + R+LMK  G++K+ G S +
Sbjct: 694 DEVEETRKLMKGTGVQKEPGWSSV 717



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 185/388 (47%), Gaps = 62/388 (15%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA-RFGKQVQAHVT 113
           NV+++ F +N  P  A++ F+ M   G+  D +++CS L    SV D    GKQV ++  
Sbjct: 244 NVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLL----SVLDCLNLGKQVHSYTL 299

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           KSG +  + VGS+L  +Y+K   + ++  +F EIP K++ C  +++SG+ E       + 
Sbjct: 300 KSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIG 359

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M   G   D  TL+A+L  C+ L +    +++H Y +R   + G  + + S+L+  
Sbjct: 360 LFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRG--MPLGSALVNT 417

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A +V++    RL      D V  +S++  Y ++G  ++   L+  M+M+G 
Sbjct: 418 YSKCGSLKLARKVYD----RLP---EMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGF 470

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGEL 349
             D  A  +++ A   + + +LG +     VH Y  + G    P   S L+ +  + G +
Sbjct: 471 SMDSYAISSILKAAVLSEESELGAQ-----VHAYITKIGLCTEPSVGSSLLTMYSKFGSI 525

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
           +   K  +++    +G   ++ W AL+++    GK       A +AL++           
Sbjct: 526 EDCCKAFSQI----NGPDLIA-WTALIASYAQHGK-------ANEALQV----------- 562

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKD 437
                 +C          LMKEKG K D
Sbjct: 563 ------YC----------LMKEKGFKPD 574



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 166/351 (47%), Gaps = 45/351 (12%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF---------LDTYALCSSLTASTSV 99
           R+ L  NV    +C N     AL+  ++  V  +F          D+Y   S L A  S+
Sbjct: 31  RDTLSANV----YCWNTIIAGALRNQNYGAVFDLFHEMCNGFQKPDSYTYSSVLAACASL 86

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
           ++ RFGK VQA V K G    VFV ++++DLYAK   + +A  +F  I   + V    +L
Sbjct: 87  EELRFGKVVQARVIKCG-AEDVFVCTSIVDLYAKCGHMAEAREVFSRISNPSVVSWTVML 145

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           SGY ++      LE+ R M   G++ +  T+++++ AC   S      QVHA++ +    
Sbjct: 146 SGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMVCEASQVHAWVFKSGFY 205

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           L  D  + ++LI M  K G +  + +VF +L   R +  +N   V+ TS    + +N   
Sbjct: 206 L--DTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVN---VMVTS----FSQNKKP 256

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISA--CSHTGQVKLGIEYFEWMVHDYKLEPG---- 332
            + I+L+  ML  G  PDE +  +++S   C + G+           VH Y L+ G    
Sbjct: 257 GKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCLNLGK----------QVHSYTLKSGLILD 306

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
               S L  +  + G L++++ L  E+  + +     + W +++S  ++ G
Sbjct: 307 LTVGSSLFTMYSKCGSLEESYSLFQEIPFKDN-----ACWASMISGFNEYG 352



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 13/247 (5%)

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G+     V S+LID ++K L   DA  +F +    N  C N +++G    + +    +L 
Sbjct: 2   GYFFYEVVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLF 61

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
             M       D +T S++L ACA L    FG+ V A +I KC     DVF+ +S++++Y 
Sbjct: 62  HEMCNGFQKPDSYTYSSVLAACASLEELRFGKVVQARVI-KCG--AEDVFVCTSIVDLYA 118

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG + +A +VF+    R+    N  VV WT ML  Y ++      ++++  M  +G + 
Sbjct: 119 KCGHMAEAREVFS----RIS---NPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEI 171

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHD-YKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           +     +VISAC     V    +   W+    + L+      + L+ +  ++G+++ + +
Sbjct: 172 NSCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDTSVA--AALISMNSKSGDINLSER 229

Query: 355 LINEMLD 361
           +  ++ D
Sbjct: 230 VFEDLDD 236



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 20/155 (12%)

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +QSSLI+ + K      A +VF          ++ +V  W +++    RN  +  V  L+
Sbjct: 9   VQSSLIDAFSKNLRFEDAYKVF-------RDTLSANVYCWNTIIAGALRNQNYGAVFDLF 61

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY---SCLVDL 342
             M     KPD   + +V++AC+   +++ G      +V    ++ G E     + +VDL
Sbjct: 62  HEMCNGFQKPDSYTYSSVLAACASLEELRFG-----KVVQARVIKCGAEDVFVCTSIVDL 116

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             + G + +A ++ + +      + SV  W  +LS
Sbjct: 117 YAKCGHMAEAREVFSRI-----SNPSVVSWTVMLS 146


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 227/430 (52%), Gaps = 22/430 (5%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFS 75
            ++R++L +  C      G + +  +  +    +N L +N +I      G    A + F 
Sbjct: 168 LRNRVLLMHVKC------GMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFL 221

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            M        +    + + AS  +     G+Q+ +   K+G    VFV  ALID+Y+K  
Sbjct: 222 MMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCG 281

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
            I DA+ +FD++P K +V  N++++GY         L +   M   G+  D+FT S ++R
Sbjct: 282 SIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIR 341

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
            CA L++ E  +Q HA ++R     G D+   ++L+++Y K G +  A  VF++  H   
Sbjct: 342 ICARLASLEHAKQAHAGLVRH--GFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPH--- 396

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
               K+V+ W +++  YG +G   E ++++E ML  G  P+ V F+ V+SACS++G    
Sbjct: 397 ----KNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDR 452

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G E FE M  D+K++P   HY+C+++LL R G LD+A+ LI +         +V+MW AL
Sbjct: 453 GWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKD----APFKPTVNMWAAL 508

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L+AC     FELGK AA+K   + P  +  YV+L N+Y +    +E   + + +K +GL+
Sbjct: 509 LTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLR 568

Query: 436 KDVGCSWIEV 445
               CSWIE+
Sbjct: 569 MLPACSWIEI 578



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 18/317 (5%)

Query: 70  ALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
           AL+ F  + ++G + +D+    + ++A   +K  R  K+V  ++  SG     ++ + ++
Sbjct: 114 ALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVL 173

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
            ++ K  ++ DA  +FDE+P KN +  N ++ G  +A  +     L  +M     D    
Sbjct: 174 LMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSR 233

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
               ++RA AGL     GRQ+H+  ++    +G DVF+  +LI+MY KCG +  A  VF+
Sbjct: 234 MFVTMIRASAGLGLIFAGRQLHSCSLK--TGVGGDVFVACALIDMYSKCGSIEDAQCVFD 291

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                      K  V W S++  Y  +GY +E + +Y  M  +G K D   F  +I  C+
Sbjct: 292 QMP-------EKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICA 344

Query: 309 HTGQVKLGIEYFEWMV-HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
               ++   +    +V H + L+      + LVDL  + G ++ A  + + M  +     
Sbjct: 345 RLASLEHAKQAHAGLVRHGFGLDIVAN--TALVDLYSKWGRIEDAKHVFDMMPHK----- 397

Query: 368 SVSMWGALLSACHDCGK 384
           +V  W AL++   + G+
Sbjct: 398 NVISWNALIAGYGNHGR 414


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 240/446 (53%), Gaps = 18/446 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           + A+  + GL+    ++  S L+  Y +CR   ++         +     + +N +I+ +
Sbjct: 141 IQAYAVKRGLMADRFVL--SSLIHMYASCR---DVAAAQLLFDAVEENGVVMWNAIITAY 195

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +NG+ +  ++ F  M   G+  D   L S +TA   + DA+ GK V  +V + G + + 
Sbjct: 196 MKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNR 255

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            + +ALID+YAK   +  A  +FD +  ++ V  +A++SGY +A      L L   M   
Sbjct: 256 NLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLA 315

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            ++ +  T+ ++L ACA L A E G+ VH+Y+ RK   L   + + ++L++ Y KCG + 
Sbjct: 316 EVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRK--RLSLTIILGTALVDFYAKCGCID 373

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A++ F       E    K+   WT+++     NG  +E ++L+ +M     +P +V F+
Sbjct: 374 DAVEAF-------ESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFI 426

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            V+ ACSH+  V+ G  +F+ M  DY ++P  EHY C+VDLL RAG +D+A++ I  M  
Sbjct: 427 GVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTM-- 484

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
                 +  +W ALLS+C      E+G+ A ++ + L+P + G Y++LSN+YA    W  
Sbjct: 485 --PIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKN 542

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
              +R+ MK++G++K  GCS IE+ G
Sbjct: 543 AAMIRKEMKDRGIEKTPGCSLIELDG 568



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 182/368 (49%), Gaps = 29/368 (7%)

Query: 46  LNPRNPLP---FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKD 101
           L PR PL    +NV++      G P  AL  F   + V  +  D + +  +L + + +  
Sbjct: 75  LGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCT 134

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
              G+ +QA+  K G ++  FV S+LI +YA    +  A+L+FD +     V  NA+++ 
Sbjct: 135 LDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITA 194

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           Y +   W   +E+ + M  +G+ +D  TL +++ AC  +  A+ G+ V  Y+  K   L 
Sbjct: 195 YMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEK--GLV 252

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            +  + ++LI+MY KCG + KA ++F+       G  ++DVV W++M+  Y +    +E 
Sbjct: 253 RNRNLMTALIDMYAKCGELGKARRLFD-------GMQSRDVVAWSAMISGYTQADQCREA 305

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY----KLEPGPEHYS 337
           + L+  M +   +P++V  V+V+SAC+  G ++ G    +W VH Y    +L       +
Sbjct: 306 LALFSEMQLAEVEPNDVTMVSVLSACAVLGALETG----KW-VHSYIRRKRLSLTIILGT 360

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKA 395
            LVD   + G +D A +    M  +   +     W AL+   A +  G+  L   ++ + 
Sbjct: 361 ALVDFYAKCGCIDDAVEAFESMPVKNSWT-----WTALIKGMATNGRGREALELFSSMRK 415

Query: 396 LELDPHNV 403
             ++P +V
Sbjct: 416 ASIEPTDV 423


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 146/441 (33%), Positives = 237/441 (53%), Gaps = 20/441 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H +  + GL     I   S L   Y+ C   +   T+    + +  ++ + +  +I+ F
Sbjct: 470 IHCYILKIGLFTD--ISVGSSLFTMYSKCGSLEESYTV---FEQMPDKDNVSWASMITGF 524

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +     A++ F  M +  I  D   L ++LTA +++     GK+V  +  ++     V
Sbjct: 525 SEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEV 584

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            VG AL+++Y+K   I  A  +FD +P K+    ++L+SGY +       L L   +   
Sbjct: 585 LVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMA 644

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            L  D FT+S+++ A A L++ + G Q+HA + +    L  +V + SSL+ MY KCG + 
Sbjct: 645 DLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKM--GLNAEVSVGSSLVTMYSKCGSID 702

Query: 242 KALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
           +  +VF         +I K D++ WT+M+  Y ++G   E +K+Y+ M   GTKPD V F
Sbjct: 703 ECHKVFE--------QIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTF 754

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V V+SACSH G V+ G  +   M  +Y +EPG  HY+C+VDLL R+G L +A + IN M 
Sbjct: 755 VGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMP 814

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
                     +WG LL+AC   G  ELG+LAA++ +EL+P   G YV LSN+ A    W+
Sbjct: 815 IE----PDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWE 870

Query: 421 EIGQLRELMKEKGLKKDVGCS 441
           ++ ++R LM+  G+KK+ G S
Sbjct: 871 DVMKIRSLMEGTGVKKEPGWS 891



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 197/403 (48%), Gaps = 24/403 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HAH  +T +L     +  S LM  Y  C+    +  L    K  +P N + +N++IS  
Sbjct: 67  LHAHFLKTAILQSNTFMTNS-LMGWY--CKSNSMVHALRLFDKTPHP-NVISWNILISGC 122

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +N S   + + F  M   G   + +   S L+A T++    +G+ V +   K+G+ S+ 
Sbjct: 123 NQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNG 182

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
           +V + +IDL+AKL    DA  +F ++  +N VC NA++SG  + +     L+L   M   
Sbjct: 183 YVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCR 242

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
               + FT S++L ACA L   EFGR V  ++I+  C  G DVF+ +++I++Y KC  + 
Sbjct: 243 FFMPNSFTFSSILTACAALEELEFGRGVQGWVIK--CGAGEDVFVGTAIIDLYAKCRDMD 300

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           +A++ F      L   I ++VV WT+++  + +          ++ M   G K +     
Sbjct: 301 QAVKEF------LRMPI-RNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTIT 353

Query: 302 TVISACSHTGQVKLGIEYFEWMVHD-YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           +V++AC+    +K  ++   W+    + L+      S L+++  + G +D + ++  EM 
Sbjct: 354 SVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVS--SALINMYSKIGVVDLSERVFREM- 410

Query: 361 DRGHGSSSVSMWGALLSACHDCGK----FELGKLAAQKALELD 399
                + +++MW  ++SA    G      EL +   Q+ L  D
Sbjct: 411 ---ESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPD 450



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 162/333 (48%), Gaps = 25/333 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
            N + +N +IS   +N     AL  F  M       +++   S LTA  ++++  FG+ V
Sbjct: 211 ENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGV 270

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           Q  V K G    VFVG+A+IDLYAK   +  A   F  +P++N V    ++SG+ +    
Sbjct: 271 QGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDS 330

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                  + M  +G   +++T++++L AC      +   Q+H+++ +    L ++V   S
Sbjct: 331 ISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNV--SS 388

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI MY K G+V  + +VF       E E  K++ +W  M+  + ++G     ++L++ M
Sbjct: 389 ALINMYSKIGVVDLSERVFR------EMESTKNLAMWAVMISAFAQSGSTGRAVELFQRM 442

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLC 344
           L  G +PD+    +V+S       + LG      ++H Y L+ G        S L  +  
Sbjct: 443 LQEGLRPDKFCSSSVLSIID---SLSLG-----RLIHCYILKIGLFTDISVGSSLFTMYS 494

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + G L++++ +  +M D+ + S     W ++++
Sbjct: 495 KCGSLEESYTVFEQMPDKDNVS-----WASMIT 522



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 154/313 (49%), Gaps = 13/313 (4%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           + +N   + V+IS F ++GS   A++ F  M   G+  D +  CSS   S  +     G+
Sbjct: 412 STKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKF--CSSSVLSI-IDSLSLGR 468

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +  ++ K G  + + VGS+L  +Y+K   + ++  +F+++P K++V   ++++G+ E  
Sbjct: 469 LIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHD 528

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                ++L R M    +  D  TL+A L AC+ L + E G++VH Y +R    +G +V +
Sbjct: 529 HAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALR--ARVGKEVLV 586

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
             +L+ MY KCG +  A +VF++          KD    +S++  Y +NGY ++ + L+ 
Sbjct: 587 GGALVNMYSKCGAIVLARRVFDMLPQ-------KDQFSCSSLVSGYAQNGYIEDALLLFH 639

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            + M     D     +VI A +    + +G +     V    L       S LV +  + 
Sbjct: 640 EIRMADLWIDSFTVSSVIGAVAILNSLDIGTQ-LHACVTKMGLNAEVSVGSSLVTMYSKC 698

Query: 347 GELDKAWKLINEM 359
           G +D+  K+  ++
Sbjct: 699 GSIDECHKVFEQI 711


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 139/399 (34%), Positives = 220/399 (55%), Gaps = 14/399 (3%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           NP N   +N +I  +  + +P+ AL+ +  MHV  I  DT+     L A   + D R G+
Sbjct: 102 NP-NIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGE 160

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           +V +   ++G+ S VFV + L+ +YA       A  +F+ +  +N V  N++++GY    
Sbjct: 161 KVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNG 220

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L L R M   G++ D FT+ +LL ACA L A   GR+ H YM++    L  ++  
Sbjct: 221 RPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVK--VGLDGNLHA 278

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L+++Y KCG + +A +VF+      E E  K VV WTS++     NG+ KE ++L++
Sbjct: 279 GNALLDLYAKCGSIRQAHKVFD------EME-EKSVVSWTSLIVGLAVNGFGKEALELFK 331

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            +   G  P E+ FV V+ ACSH G V  G +YF+ M  +Y + P  EHY C+VDLL RA
Sbjct: 332 ELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRA 391

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G + +A + I  M  +     +  +W  LL AC   G   LG++A  + L+L+P + G Y
Sbjct: 392 GLVKQAHEFIQNMPMQ----PNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDY 447

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           V+LSNLYA    W ++ ++R  M  +G+KK  G S +E+
Sbjct: 448 VLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVEL 486



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 116/240 (48%), Gaps = 21/240 (8%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +F +I   N    N ++ GY E++     LEL R M    ++ D  T   LL+A A 
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L     G +VH+  IR      + VF+Q++L+ MY  CG    A ++F L   R      
Sbjct: 153 LMDVREGEKVHSIAIRN--GFESLVFVQNTLVHMYAACGHAESAHKLFELMAER------ 204

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
            ++V W S++  Y  NG   E + L+  M + G +PD    V+++SAC+  G + LG   
Sbjct: 205 -NLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRA 263

Query: 320 FEWMVH---DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             +MV    D  L  G    + L+DL  + G + +A K+ +EM ++     SV  W +L+
Sbjct: 264 HVYMVKVGLDGNLHAG----NALLDLYAKCGSIRQAHKVFDEMEEK-----SVVSWTSLI 314



 Score = 45.4 bits (106), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 40/230 (17%)

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           ALL +CA  S  +F RQ+HA+ IR    L N    +  +  +   C  ++ A Q+F+   
Sbjct: 44  ALLLSCAS-SKFKF-RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQ 101

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS--- 308
                  N ++  W +M+  Y  +      ++LY  M ++  +PD   +  ++ A +   
Sbjct: 102 -------NPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLM 154

Query: 309 --------HTGQVKLGIEYFEW----MVHDYKLEPGPEHYSCLVDLLCRA---------- 346
                   H+  ++ G E   +    +VH Y      E    L +L+             
Sbjct: 155 DVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVIN 214

Query: 347 -----GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
                G  ++A  L  EM  RG      +M  +LLSAC + G   LG+ A
Sbjct: 215 GYALNGRPNEALTLFREMGLRGVEPDGFTMV-SLLSACAELGALALGRRA 263


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 215/398 (54%), Gaps = 15/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + ++V++  F + G  +    TF  +   G   D Y L   + A   +K+ + G+ +
Sbjct: 123 RDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLI 182

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K G     FV +AL+D+Y K   I DA  +FD++  ++ V    ++ GY E    
Sbjct: 183 HHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKA 242

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M   G+  D   +  ++ ACA L A    R +  Y+ RK   L  DV + +
Sbjct: 243 NESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQL--DVILGT 300

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           ++I+MY KCG V  A ++F+    R+E    K+V+ W++M+  YG +G  ++ + L+  M
Sbjct: 301 AMIDMYAKCGCVESAREIFD----RME---EKNVISWSAMIAAYGYHGQGRKALDLFPMM 353

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L +G  PD++   +++ ACSH G V+ G+ +F  M  DY +    +HY+C+VDLL RAG 
Sbjct: 354 LSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGR 413

Query: 349 LDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           LD+A KLI  M +++  G     +WGA L AC       L + AA   LEL   N G YV
Sbjct: 414 LDEALKLIKSMTIEKDEG-----LWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYV 468

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YA    W+++ ++R+LM ++ LKK  G +WIEV
Sbjct: 469 LLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEV 506



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/397 (33%), Positives = 213/397 (53%), Gaps = 13/397 (3%)

Query: 49   RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
            R+ + ++V++  F + G  +    TF  +   G   D Y L   + A   +K+ + G+ +
Sbjct: 799  RDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLI 858

Query: 109  QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
               V K G     FV +AL+D+Y K   I DA  +FD++  ++ V    ++ GY E    
Sbjct: 859  HHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNA 918

Query: 169  AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
               L L   M   G+  D   +  ++ ACA L A    R +  Y+ RK   L  DV + +
Sbjct: 919  NESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL--DVILGT 976

Query: 229  SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            ++I+M+ KCG V  A ++F+    R+E    K+V+ W++M+  YG +G  ++ + L+  M
Sbjct: 977  AMIDMHAKCGCVESAREIFD----RME---EKNVISWSAMIAAYGYHGQGRKALDLFPMM 1029

Query: 289  LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            L +G  P+++  V+++ ACSH G V+ G+ +F  M  DY +    +HY+C+VDLL RAG 
Sbjct: 1030 LRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGR 1089

Query: 349  LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            LD+A KLI  M           +WGA L AC       L + AA   LEL P N G Y++
Sbjct: 1090 LDEALKLIXSMT----XEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYIL 1145

Query: 409  LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            LSN+YA    W+++ ++R+LM ++ LKK  G +WIEV
Sbjct: 1146 LSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEV 1182



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 146/299 (48%), Gaps = 30/299 (10%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +QV A  +  G L ++ V + LI  Y+    + DA  +FD + V++SV  + ++ G+ + 
Sbjct: 79  RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 138

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +       R +   G   D++TL  ++RAC  L   + GR +H  + +   +L  D F
Sbjct: 139 GDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL--DHF 196

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L++MY KC  +  A  +F+    R       D+V WT M+G Y   G   E + L+
Sbjct: 197 VCAALVDMYVKCREIEDARFLFDKMQER-------DLVTWTVMIGGYAECGKANESLVLF 249

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY----KLEPGPEHYSCLVD 341
           E M   G  PD+VA VTV+ AC+     KLG  +   ++ DY    K +      + ++D
Sbjct: 250 EKMREEGVVPDKVAMVTVVFACA-----KLGAMHKARIIDDYIQRKKFQLDVILGTAMID 304

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           +  + G ++ A     E+ DR    + +S W A+++A    G+        +KAL+L P
Sbjct: 305 MYAKCGCVESA----REIFDRMEEKNVIS-WSAMIAAYGYHGQ-------GRKALDLFP 351



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 145/299 (48%), Gaps = 30/299 (10%)

Query: 106  KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            +QV    +  G L ++ V + L+  Y+    + DA  +FD + V++SV  + ++ G+ + 
Sbjct: 755  RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814

Query: 166  KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              +       R +   G   D++TL  ++RAC  L   + GR +H  + +   +L  D F
Sbjct: 815  GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL--DHF 872

Query: 226  MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
            + ++L++MYGKC  +  A  +F+    R       D+V WT M+G Y   G   E + L+
Sbjct: 873  VCAALVDMYGKCREIEDARFLFDKMXER-------DLVTWTVMIGGYAECGNANESLVLF 925

Query: 286  EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY----KLEPGPEHYSCLVD 341
            + M   G  PD+VA VTV+ AC+     KLG  +    + DY    K +      + ++D
Sbjct: 926  DKMREEGVVPDKVAMVTVVFACA-----KLGAMHKARTIDDYIQRKKFQLDVILGTAMID 980

Query: 342  LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
            +  + G ++ A     E+ DR    + +S W A+++A    G+        +KAL+L P
Sbjct: 981  MHAKCGCVESA----REIFDRMEEKNVIS-WSAMIAAYGYHGQ-------GRKALDLFP 1027



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 158/390 (40%), Gaps = 57/390 (14%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  CR  ++   L + ++    R+ + + V+I  +   G    +L  F  M   G+  D 
Sbjct: 205 YVKCREIEDARFLFDKMQ---ERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDK 261

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
            A+ + + A   +      + +  ++ +  +   V +G+A+ID+YAK   +  A  +FD 
Sbjct: 262 VAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDR 321

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +  KN +  +A+++ Y         L+L  +M + G+  D  TL++LL AC+        
Sbjct: 322 MEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACS-------- 373

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
              HA                          GLV + L+ F+      +  +  DV  +T
Sbjct: 374 ---HA--------------------------GLVEEGLRFFSSMWE--DYSVRTDVKHYT 402

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
            ++ + GR G   E +KL ++M +   + DE  +   + AC     V L  +    ++  
Sbjct: 403 CVVDLLGRAGRLDEALKLIKSMTI---EKDEGLWGAFLGACRTHKDVVLAEKAATSLLEL 459

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
               PG  HY  L ++   AG  +   K+ + M  R    +    W  + +  H   +F 
Sbjct: 460 QSQNPG--HYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSH---QFS 514

Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
           +G     ++ E       IY ML +L  K 
Sbjct: 515 VGDTTHPRSKE-------IYEMLKSLSNKL 537


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 219/401 (54%), Gaps = 15/401 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RN + +N +I  +  NG    AL  F  M   G+ +   ++ ++L A   +     G
Sbjct: 388 MQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG 447

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           ++V   + + G  S+V V +ALI +Y K      A  +FDE+  K  V  NA++ G  + 
Sbjct: 448 RRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQN 507

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L   M    +  D FTL +++ A A +S     R +H Y IR   +L  DV+
Sbjct: 508 GSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIR--LHLDQDVY 565

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI+MY KCG V+ A  +FN A  R        V+ W +M+  YG +G  K  ++L+
Sbjct: 566 VLTALIDMYAKCGRVSIARSLFNSARDR-------HVITWNAMIHGYGSHGSGKVAVELF 618

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M  +G  P+E  F++V+SACSH G V  G EYF  M  DY LEPG EHY  +VDLL R
Sbjct: 619 EEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGR 678

Query: 346 AGELDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           AG+L +AW  I +M ++ G     +S++GA+L AC      EL + +AQ+  EL+P    
Sbjct: 679 AGKLHEAWSFIQKMPMEPG-----ISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGV 733

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            +V+L+N+YA   +W ++ ++R  M++KGL+K  G S +++
Sbjct: 734 YHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQL 774



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 163/372 (43%), Gaps = 30/372 (8%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLD 85
           Y  CR     G        +  R+ + +N +++ + RNG    A+     M    G   D
Sbjct: 270 YAKCRRP---GDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPD 326

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
              L S L A    +     ++V A   + G+   V V +A++D+Y K   +  A  +FD
Sbjct: 327 AVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFD 386

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
            +  +NSV  NA++ GY E       L L + M   G+D    ++ A L AC  L   + 
Sbjct: 387 GMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDE 446

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           GR+VH  ++R    L ++V + ++LI MY KC     A QVF+  G+       K  V W
Sbjct: 447 GRRVHELLVR--IGLESNVNVMNALITMYCKCKRTDLAAQVFDELGY-------KTRVSW 497

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            +M+    +NG  ++ ++L+  M +   KPD    V++I A +             W +H
Sbjct: 498 NAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQA----RW-IH 552

Query: 326 DY--KLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            Y  +L    + Y  + L+D+  + G +  A  L N   DR      V  W A++   H 
Sbjct: 553 GYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDR-----HVITWNAMI---HG 604

Query: 382 CGKFELGKLAAQ 393
            G    GK+A +
Sbjct: 605 YGSHGSGKVAVE 616



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 143/320 (44%), Gaps = 18/320 (5%)

Query: 68  LYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSAL 127
           L A    S     G  L T+     L A+ +  D   G+ V A +   G        +AL
Sbjct: 209 LAAFAAMSPASGSGPVLRTFTSLLKLCAARA--DLATGRAVHAQLAARGLSPEALAATAL 266

Query: 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMPALGLDYD 186
            ++YAK     DA  +FD +P ++ V  NAL++GY    L    + + VR+    G   D
Sbjct: 267 ANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPD 326

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
             TL ++L ACA   A    R+VHA+ +R        V + ++++++Y KCG V  A +V
Sbjct: 327 AVTLVSVLPACADAQALGACREVHAFAVRG--GFDEQVNVSTAILDVYCKCGAVDSARKV 384

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           F+       G  +++ V W +M+  Y  NG   E + L++ M+  G    +V+ +  + A
Sbjct: 385 FD-------GMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHA 437

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
           C   G +  G    E +V    LE      + L+ + C+    D A ++ +E+     G 
Sbjct: 438 CGELGFLDEGRRVHELLVR-IGLESNVNVMNALITMYCKCKRTDLAAQVFDEL-----GY 491

Query: 367 SSVSMWGALLSACHDCGKFE 386
            +   W A++  C   G  E
Sbjct: 492 KTRVSWNAMILGCTQNGSSE 511


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 212/391 (54%), Gaps = 15/391 (3%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           V+ DF R    L+       +    I L    L + +    ++ D   G  +  +  KSG
Sbjct: 298 VVCDFMREALELFC--QLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSG 355

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           ++  + VG+ L+ +YAK  +I+ A   F+E+ ++++V   A++SGY +      GL +  
Sbjct: 356 FVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFL 415

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M   G++ +  TL+++L ACA L+   +G   H Y I   C    D  + ++LI+MY K
Sbjct: 416 EMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAI--ICGFTADTMICNALIDMYAK 473

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG +  A +VF+    R        +V W +M+  YG +G   E + L++ M   G KPD
Sbjct: 474 CGKIDTARKVFDRMHKR-------GIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPD 526

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
           +V F+ +ISACSH+G V  G  +F  M  D+ + P  EHY+C+VDLL RAG     +K +
Sbjct: 527 DVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAG----LFKEV 582

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
           +  +++      V +WGALLSAC      ELG+  ++K  +L P + G +V+LSN+Y+  
Sbjct: 583 HSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAV 642

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             WD+  Q+R   KE+G +K  GCSWIE++G
Sbjct: 643 GRWDDAAQVRFTQKEQGFEKSPGCSWIEISG 673



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 166/325 (51%), Gaps = 30/325 (9%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
            P+N + +N++I  +  NG    A+  +  M  +GI  + +     L A +++K+A  G+
Sbjct: 80  RPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGR 139

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++   + +    S+V+V +AL+D YAK   + DA+ +FD++  ++ V  N+++SG+    
Sbjct: 140 EIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGF---S 196

Query: 167 LWAGGL-ELVRLMPALGLDY--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           L  G   E+ RL+  +  D   +  T+  +L A A +++   G+++H + +R+      D
Sbjct: 197 LHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRR--GFVGD 254

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V + + ++++YGKC  +  A ++F++ G      I K+ V W++M+G Y    + +E ++
Sbjct: 255 VVVGTGILDVYGKCQCIDYARRIFDMMG------IVKNEVTWSAMVGAYVVCDFMREALE 308

Query: 284 LYEAMLMNGTKPD-----EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PE 334
           L+  +LM   K D      V   TVI  C++   +  G       +H Y ++ G      
Sbjct: 309 LFCQLLM--LKDDVIVLSAVTLATVIRVCANLTDLSTGT-----CLHCYAIKSGFVLDLM 361

Query: 335 HYSCLVDLLCRAGELDKAWKLINEM 359
             + L+ +  + G ++ A +  NEM
Sbjct: 362 VGNTLLSMYAKCGIINGAMRFFNEM 386



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 119/317 (37%), Gaps = 48/317 (15%)

Query: 6   QFETGLLLICLII---FQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVIS 59
              TG  L C  I   F   LM+  T        G +   ++F N    R+ + F  +IS
Sbjct: 340 DLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIIS 399

Query: 60  DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS 119
            + +NG+    L+ F  M + GI  +   L S L A   +    +G     +    G+ +
Sbjct: 400 GYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTA 459

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
              + +ALID+YAK   I  A  +FD +  +  V  N ++  Y    +    L L   M 
Sbjct: 460 DTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQ 519

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
           + GL  D  T   L+ AC+                                       GL
Sbjct: 520 SEGLKPDDVTFICLISACS-------------------------------------HSGL 542

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           V +    FN       G I + +  +  M+ +  R G FKEV    E M +   +PD   
Sbjct: 543 VAEGKYWFNAMTQDF-GIIPR-MEHYACMVDLLSRAGLFKEVHSFIEKMPL---EPDVRV 597

Query: 300 FVTVISACSHTGQVKLG 316
           +  ++SAC     V+LG
Sbjct: 598 WGALLSACRVYKNVELG 614


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 144/431 (33%), Positives = 227/431 (52%), Gaps = 45/431 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I+ F + G P  AL+ F  M    +  +   +   L+A     D  FG+ V
Sbjct: 200 RDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWV 259

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +++ ++    S+ + +A++D+Y K   + DA+ +FD++P K+ V    +L GY +   +
Sbjct: 260 HSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEY 319

Query: 169 AGGLELVRLMP----------------------ALGLDY----------DHFTLSALLRA 196
                +   MP                      AL L +          D  TL + L A
Sbjct: 320 DAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSA 379

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA L A + G  +H Y+ ++   L  +  + +SLI+MY KCG + KAL VF    H +E 
Sbjct: 380 CAQLGAMDLGGWIHVYIKKQGMKL--NCHLTTSLIDMYCKCGDLQKALMVF----HSVE- 432

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              KDV +W++M+     +G+ K+ I L+  M  +  KP+ V F  ++ ACSH G V+ G
Sbjct: 433 --RKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEG 490

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             +F  M   Y + PG +HY+C+VD+L RAG L++A +LI +M      + + S+WGALL
Sbjct: 491 RTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKM----PMAPAASVWGALL 546

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
            AC       L + A  + +EL+P N G YV+LSN+YAK   WD +  LR+LM++ GLKK
Sbjct: 547 GACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKK 606

Query: 437 DVGCSWIEVTG 447
           + GCS IEV G
Sbjct: 607 EPGCSSIEVDG 617



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 197/435 (45%), Gaps = 47/435 (10%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA    TGL       F +  ++         +L         +   N   +N +I  
Sbjct: 53  QIHAQMLRTGLFFDP---FSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRA 109

Query: 61  FCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS 119
           +  + +P  +L  F   +H    F D +     + A++ +++   GK     V K    S
Sbjct: 110 YASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS 169

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
            VF+ ++LI  YAK   +     +F  IP ++ V  N++++ + +       LEL + M 
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
              +  +  T+  +L ACA  S  EFGR VH+Y+ R    +G  + + +++++MY KCG 
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERN--RIGESLTLSNAMLDMYTKCGS 287

Query: 240 VTKALQVFN-------------LAGHRLEGEI-----------NKDVVLWTSMLGVYGRN 275
           V  A ++F+             L G+   GE            N+D+  W +++  Y + 
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQC 347

Query: 276 GYFKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           G  KE ++L+  + ++ T KPDEV  V+ +SAC+  G + LG     W +H Y  + G +
Sbjct: 348 GKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG----GW-IHVYIKKQGMK 402

Query: 335 ---HYSC-LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELG 388
              H +  L+D+ C+ G+L KA  + + +  +      V +W A+++  A H  GK  + 
Sbjct: 403 LNCHLTTSLIDMYCKCGDLQKALMVFHSVERK-----DVFVWSAMIAGLAMHGHGKDAIA 457

Query: 389 KLAAQKALELDPHNV 403
             +  +  ++ P+ V
Sbjct: 458 LFSKMQEDKVKPNAV 472



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 158/373 (42%), Gaps = 65/373 (17%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYA--KLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           KQ+ A + ++G     F  S LI   A      +  A+ +FD+IP  N    N L+  Y 
Sbjct: 52  KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYA 111

Query: 164 EAKLWAGGLELVRLMPALGLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +      L +   M     D+ D FT   L++A + L     G+  H  +I+    LG+
Sbjct: 112 SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVL--LGS 169

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DVF+ +SLI  Y KCG +    +VF     R       DVV W SM+  + + G  +E +
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRR-------DVVSWNSMITAFVQGGCPEEAL 222

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY----KLEPGPEHYSC 338
           +L++ M     KP+ +  V V+SAC+     K   E+  W VH Y    ++       + 
Sbjct: 223 ELFQEMETQNVKPNGITMVGVLSACAK----KSDFEFGRW-VHSYIERNRIGESLTLSNA 277

Query: 339 LVDLLCRAGELDKAWKLINEM--------------------LDRGHG------SSSVSMW 372
           ++D+  + G ++ A +L ++M                     D   G      +  ++ W
Sbjct: 278 MLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAW 337

Query: 373 GALLSACHDCGKFELGKLAAQKALEL----------DPHNVGIYVMLSNLYAKFCMWDEI 422
            AL+SA   CGK        ++ALEL           P  V +   LS   A+    D  
Sbjct: 338 NALISAYEQCGK-------PKEALELFHELQLSKTAKPDEVTLVSTLSAC-AQLGAMDLG 389

Query: 423 GQLRELMKEKGLK 435
           G +   +K++G+K
Sbjct: 390 GWIHVYIKKQGMK 402


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 136/432 (31%), Positives = 223/432 (51%), Gaps = 49/432 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFM--HVHG---IFLDTYALCSSLTASTSVKDARF 104
           N   +N +I  +  N   + A+  +  M  + HG   IF D +     + +   +     
Sbjct: 76  NAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDL 135

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN-------- 156
           GKQV  HV K G  S+  V ++L+++Y K   + DA  +F+E+  +++V  N        
Sbjct: 136 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVR 195

Query: 157 -----------------------ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
                                  A++SGY     +A  LE  R M  +G++ D  +L ++
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L  CA L A E G+ +H Y  +       ++ + ++LIEMY KCG + +  ++F+    R
Sbjct: 256 LPDCAQLGALELGKWIHIYADK--AGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKER 313

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  DV+ W++M+     +G  +E I+L++ M     +P  + FV +++AC+H G +
Sbjct: 314 -------DVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLL 366

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G+ YFE M  DY +EPG EHY CLV+LL  +G LD+A +L+ +M  +        +WG
Sbjct: 367 NEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRK----PDSPIWG 422

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           +LLS+C   G  ++  +A +  LEL+P + G YV+LSNLYA    WD + ++R+LM+ K 
Sbjct: 423 SLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKS 482

Query: 434 LKKDVGCSWIEV 445
           +KK  GCS IEV
Sbjct: 483 MKKTPGCSSIEV 494



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 156/328 (47%), Gaps = 56/328 (17%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++ AH+ K     S F+ + ++D+         A L+F  +   N+   NA++  Y   
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 90

Query: 166 KLWAGGLELVRLMPALGLDY-------DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           K++   + + + M  LG  +       D FT   ++++CAGL   + G+QVH ++ +   
Sbjct: 91  KVYVLAITVYKQM--LGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFK--F 146

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI------- 258
              ++  +++SL+EMY KC  +  A +VF              ++GH   G++       
Sbjct: 147 GQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIF 206

Query: 259 ----NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
               +K +  WT+++  Y R G + + ++ +  M M G +PDE++ V+V+  C+  G ++
Sbjct: 207 EEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALE 266

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
           LG    +W +H Y  + G     C    L+++  + G +D+  +L ++M +R      V 
Sbjct: 267 LG----KW-IHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKER-----DVI 316

Query: 371 MWGALLSACHDCGKFELGKLAAQKALEL 398
            W  ++    + G+       A++A+EL
Sbjct: 317 SWSTMIVGLANHGR-------AREAIEL 337


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 131/397 (32%), Positives = 220/397 (55%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +I+ + + G    AL  F  M    +  +   + S L+A         G  +
Sbjct: 224 KDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSM 283

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           ++ +   G  S++ + +ALID+Y+K   +  A  +FD++  ++ +  N ++ GY     +
Sbjct: 284 RSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSY 343

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L R M A G++    T  ++L +CA L A + G+ +HAY I K  N  +   + +
Sbjct: 344 KEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAY-INKNFNSVS-TSLST 401

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI++Y KCG +  A QVF       +G   K +  W +M+     +G   +  +L+  M
Sbjct: 402 SLIDLYAKCGNIVAARQVF-------DGMKIKSLASWNAMICGLAMHGQADKAFELFSKM 454

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G +P+E+ FV ++SAC H G V LG ++F  MV DYK+ P  +HY C++DLL RAG 
Sbjct: 455 SSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGL 514

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            ++A  L+  M  +  G    ++WG+LL AC D G+ ELG+L A++  EL+P N G YV+
Sbjct: 515 FEEAESLLQNMEVKPDG----AIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVL 570

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    WD++ ++R  + ++G+KK  GC+ IEV
Sbjct: 571 LSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEV 607



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 201/452 (44%), Gaps = 78/452 (17%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HAH  +TGL      +F    ++ ++      ++    +    +   N   +N +I  
Sbjct: 47  QIHAHIIKTGL---HNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRG 103

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
              + SP  AL  F  M   G+  ++Y     L +   +  A  GKQ+ AHV K G++S 
Sbjct: 104 LSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSD 163

Query: 121 VFVGSALIDLYAKLLLIHDAEL-------------------------------MFDEIPV 149
           VF+ ++LI++YA+   +++A+L                               +FDE+PV
Sbjct: 164 VFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPV 223

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
           K+ V  NA+++GY +       L L   M    +  +  T+ ++L ACA  +A + G  +
Sbjct: 224 KDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSM 283

Query: 210 HAYMIRK--CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
            +++  +  C NL     + ++LI+MY KCG +  A ++F       +  + +DV+ W  
Sbjct: 284 RSWIEDRGLCSNLK----LVNALIDMYSKCGDLQTARELF-------DDMLERDVISWNV 332

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           M+G Y     +KE + L+  ML +G +P E+ F++++ +C+H G + LG     ++  ++
Sbjct: 333 MIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNF 392

Query: 328 KLE------------------------------PGPEHYSCLVDLLCRAGELDKAWKLIN 357
                                                 ++ ++  L   G+ DKA++L +
Sbjct: 393 NSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFS 452

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           +M   G   + ++  G +LSAC   G  +LG+
Sbjct: 453 KMSSDGIEPNEITFVG-ILSACKHAGLVDLGQ 483



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 148/297 (49%), Gaps = 29/297 (9%)

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA--KLLLIHDAELMFDEIPV 149
           SL   +  +  R  KQ+ AH+ K+G  +++F  S LI+  A  +   I  A  +F+ I  
Sbjct: 32  SLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEE 91

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
            N    N+++ G   +   A  L     M   G++ + +T   LL++CA L++A  G+Q+
Sbjct: 92  PNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQI 151

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEG 256
           HA++++      +DVF+ +SLI MY + G +  A  VF+             +AG+ L G
Sbjct: 152 HAHVLK--LGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWG 209

Query: 257 EIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
            ++           KDVV W +M+  Y + G  KE + L+E M      P+E   V+V+S
Sbjct: 210 YMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLS 269

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           AC+ +  + LG     W + D  L    +  + L+D+  + G+L  A +L ++ML+R
Sbjct: 270 ACAQSNALDLGNSMRSW-IEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLER 325


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 234/447 (52%), Gaps = 48/447 (10%)

Query: 35  NLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           +LG L    + L+    RN + +  +I+   + G    ALK +S M   G   +     S
Sbjct: 325 DLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSS 384

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL---------------- 135
            L+A  +++D R G ++ A+  K G  +++FV S+LID+Y K                  
Sbjct: 385 VLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKN 444

Query: 136 ------LIH---------DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
                 LI          +AE +F+++P +NSV  N ++SGY E + +   L     M A
Sbjct: 445 TVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLA 504

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G      TLS++L ACA L + E GR VHA +++    + +++FM ++L +MY K G +
Sbjct: 505 SGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVK--LGIEDNIFMGTALSDMYAKSGDL 562

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             + +VF    +++     K+ + WT+M+     NG+ +E I L+E M+ NG  P+E  F
Sbjct: 563 DSSRRVF----YQMP---EKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTF 615

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + ++ ACSH G V+  I YFE M   + + P  +HY+C+VD+L RAG L +A     E+L
Sbjct: 616 LAILFACSHCGLVEQAIHYFETM-QAHGIPPKSKHYTCMVDVLARAGCLPEA----EELL 670

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +       S W +LLSAC      E+G+ AA+K  EL+  N   YV+LSN+YA    W 
Sbjct: 671 MKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWK 730

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +  + R LM+   LKKD GCSW+++ G
Sbjct: 731 DAAETRILMQGASLKKDAGCSWLQLRG 757



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 36/291 (12%)

Query: 103 RFGKQVQAH-VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           R G    AH V     +  V   +AL+D+YA L  ++ A  + D +P +N V    L++ 
Sbjct: 294 RMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIAR 353

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           + +    A  L+L   M A G   +    S++L ACA L     G ++HA  ++      
Sbjct: 354 HEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKM--GSS 411

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGH-------RLEGEINK- 260
            ++F+ SSLI+MY KC   T A +VFN             ++G+         EG  NK 
Sbjct: 412 TNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKM 471

Query: 261 ---DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              + V W +M+  Y  N  F + +  + AML +G  P E+   +V+ AC++   +++G 
Sbjct: 472 PARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMG- 530

Query: 318 EYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGH 364
                MVH   ++ G E      + L D+  ++G+LD + ++  +M ++ +
Sbjct: 531 ----RMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNN 577



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 126/294 (42%), Gaps = 55/294 (18%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           SV   + ++D   K   + DA  +++  P+ +     A++SG+   +L      + R M 
Sbjct: 179 SVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKML 238

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL-GNDVFMQSSLIEMYGKCG 238
              +  +  TL  +++AC G  A EF   +    +   CNL    + + +SLI +Y + G
Sbjct: 239 TCSVRPNVVTLICVIKACVG--AGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMG 296

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY-----------------GRN------ 275
               A +VF+      + E+ +DVV WT++L VY                  RN      
Sbjct: 297 DAAAAHRVFD------DMEV-RDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGT 349

Query: 276 --------GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
                   G   E +KLY  ML +G +P+   F +V+SAC+    ++ G       +H  
Sbjct: 350 LIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTR-----IHAN 404

Query: 328 KLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            L+ G        S L+D+ C+  +   A ++ N + ++     +   W +L+S
Sbjct: 405 ALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEK-----NTVCWNSLIS 453



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 119/348 (34%), Gaps = 68/348 (19%)

Query: 50  NPLPFNVVISDF---CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +P P  + I  F     NG PL A     F            LC +++A+++   +    
Sbjct: 34  DPSPLTLPIKAFKLRLANGPPL-ASTAKDFKTYSETCASLLRLCRAMSATSTTMPSYAPS 92

Query: 107 Q--------VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA--- 155
                    + AH  +SG  +   V S L+  YA      D +  F +    ++  +   
Sbjct: 93  SGCLPLVLSLHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFRDCVAADAASSFTY 152

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           + ++S + +A   A    L   MP                     S   +   V A M R
Sbjct: 153 DFMVSEHVKAGDIASARRLFYGMPEK-------------------SVVSYTTMVDALMKR 193

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
                          +E+Y +C L                      V  +T+M+  + RN
Sbjct: 194 GSVR---------DAVELYERCPL--------------------HSVAFFTAMISGFVRN 224

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
              K+   ++  ML    +P+ V  + VI AC   G+  L +      V     E   E 
Sbjct: 225 ELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEV 284

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           ++ L+ L  R G+   A ++ ++M  R      V  W ALL    D G
Sbjct: 285 HNSLITLYLRMGDAAAAHRVFDDMEVR-----DVVSWTALLDVYADLG 327


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 138/400 (34%), Positives = 216/400 (54%), Gaps = 18/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTYALCSSLTASTSVKDARFG 105
           RN + +N +I  F +N   LY    F F  +   +   LD  +  S  +A  +  +  FG
Sbjct: 194 RNLVSWNTMIVGFLQNK--LYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFG 251

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQV     K G  + V++ ++L D+Y K  L +D   +F     ++ V  N ++  Y   
Sbjct: 252 KQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYN 311

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +        +M   G   D  + S++L +CA L+A   G  +H  +IR       ++ 
Sbjct: 312 HNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIR--SGFVKNLR 369

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + SSLI MY KCG +  A Q+F       E   +++VV WT+++    ++G+   V++L+
Sbjct: 370 VASSLITMYAKCGSLVDAFQIF-------EETEDRNVVCWTAIIAACQQHGHANWVVELF 422

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E ML  G KPD + FV+V+SACSHTG+V+ G  YF  M+  + + PG EHY+C+VDLL R
Sbjct: 423 EQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSR 482

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AGELD+A + I  M  +       S+WGALLSAC +     +GK  A K  +L+P N G 
Sbjct: 483 AGELDRAKRFIELMPIK----PDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGN 538

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           YV+L N+  +  M +E  ++R  M+  G++K+ GCSWI++
Sbjct: 539 YVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDI 578



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 192/395 (48%), Gaps = 40/395 (10%)

Query: 3   HAHQFETGLLLICLI----IFQSRLMLPYTTCRHKKNLGTLTNCLKFL-----NPRNPLP 53
           HA Q  + L+   L+    +F + L L Y  C      G++   L        + +N + 
Sbjct: 45  HATQIHSQLITTALLSLPFLFNNLLNL-YAKC------GSVDQTLLLFSSAPDDSKNVVS 97

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +  +I+   R   P  AL  F+ M   G++ + Y   + L+A T    +  G+Q+ + V 
Sbjct: 98  WTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVW 157

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+L+ VFV SAL+D+YAK   +  AE +F+E+PV+N V  N ++ G+ + KL+   + 
Sbjct: 158 KHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIF 217

Query: 174 LVRLMPALGLD-YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
             + +    L   D  + S++  ACA     EFG+QVH   ++    + N V++ +SL +
Sbjct: 218 FFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALK--LGVWNLVYINNSLSD 275

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MYGKCGL     ++F+  G R       DVV W  M+  Y  N  +++    +  M   G
Sbjct: 276 MYGKCGLFNDVAKLFSNTGAR-------DVVTWNIMIMAYVYNHNYEDACNSFWMMRRKG 328

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGE 348
           + PDE ++ +V+ +C++   +  G      ++H+  +  G        S L+ +  + G 
Sbjct: 329 SIPDEASYSSVLHSCANLAALYQGT-----LIHNQIIRSGFVKNLRVASSLITMYAKCGS 383

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           L  A+++  E  DR     +V  W A+++AC   G
Sbjct: 384 LVDAFQIFEETEDR-----NVVCWTAIIAACQQHG 413



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 150/320 (46%), Gaps = 29/320 (9%)

Query: 67  PLYALKTFSFMHVHGI-FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGS 125
           PL+   +F   H H   FL      +SL   +  + ++   Q+ + +  +  LS  F+ +
Sbjct: 9   PLHPNLSFFKSHYHQTPFLHPLTSLNSLLNCS--RTSKHATQIHSQLITTALLSLPFLFN 66

Query: 126 ALIDLYAKLLLIHDAELMFDEIP--VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL 183
            L++LYAK   +    L+F   P   KN V   +L++     K     L     M   G+
Sbjct: 67  NLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGV 126

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
             +H+T SA+L AC   +A+  G Q+H+ + +       +VF+ S+L++MY KC  +  A
Sbjct: 127 YPNHYTFSAVLSACTDTTASVHGEQMHSLVWKH--GFLAEVFVVSALVDMYAKCCDMLMA 184

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKPDEVAFVT 302
            +VF       E    +++V W +M+  + +N  + + I  ++ +L+ N T  DEV+F +
Sbjct: 185 EKVF-------EEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSS 237

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINE 358
           V SAC++ G ++ G +     VH   L+ G  +     + L D+  + G  +   KL + 
Sbjct: 238 VFSACANAGNLEFGKQ-----VHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSN 292

Query: 359 MLDRGHGSSSVSMWGALLSA 378
                 G+  V  W  ++ A
Sbjct: 293 T-----GARDVVTWNIMIMA 307



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 47/288 (16%)

Query: 177 LMPALGLDYDHFTLSALLRACAGLSA-------AEFGRQVHAYMIRKCCNLGNDVFMQSS 229
           L P L     H+  +  L     L++       ++   Q+H+ +I     L +  F+ ++
Sbjct: 10  LHPNLSFFKSHYHQTPFLHPLTSLNSLLNCSRTSKHATQIHSQLI--TTALLSLPFLFNN 67

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L+ +Y KCG V + L +F+ A      + +K+VV WTS++    R     + +  +  M 
Sbjct: 68  LLNLYAKCGSVDQTLLLFSSA-----PDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMR 122

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
            +G  P+   F  V+SAC+ T     G E    +V  +         S LVD+  +  ++
Sbjct: 123 RSGVYPNHYTFSAVLSACTDTTASVHG-EQMHSLVWKHGFLAEVFVVSALVDMYAKCCDM 181

Query: 350 DKAWKLINEMLDRGHGSSSVSMWG-------------------------------ALLSA 378
             A K+  EM  R   S +  + G                               ++ SA
Sbjct: 182 LMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSA 241

Query: 379 CHDCGKFELGKLAAQKALELDPHN-VGIYVMLSNLYAKFCMWDEIGQL 425
           C + G  E GK     AL+L   N V I   LS++Y K  +++++ +L
Sbjct: 242 CANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKL 289


>gi|357116286|ref|XP_003559913.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 692

 Score =  228 bits (580), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 117/399 (29%), Positives = 225/399 (56%), Gaps = 21/399 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + ++ +I+ + +NG    ++  F+ M   G+  ++  + S L + + +K  R GK++
Sbjct: 311 KDVVSWSTLIAGYSQNGKDHVSVNLFTEMVTAGLKPNSNTMASILPSLSEMKLFRHGKEI 370

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                ++G+  S F+GSA ID Y++   I +AE++ + +P ++ V  N++++GY      
Sbjct: 371 HGFSLRNGFDQSKFLGSAFIDFYSRQGSIREAEIVLELMPKRDLVIWNSMVAGYAVNGNT 430

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR----KCCNLGNDV 224
              L   R +  +G   DH T+ ++L  C   S    G+++HAY++R      C++ N  
Sbjct: 431 DSALCAFRALQKVGFRPDHVTVVSVLPVCNHHSRLIQGKELHAYVVRHYMSSVCSVSN-- 488

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
               +LI+MY KC  + K  ++F L         ++D   + +++  +G++G+  E I L
Sbjct: 489 ----ALIDMYCKCCCLEKGKEIFQLV-------TDRDTATYNTLISSFGKHGHEDEAIML 537

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           ++ M  +G  PD+V FV ++S+CSH G ++ G+ +++ M+ DY + PG EHYSC+VDL  
Sbjct: 538 FDLMKRDGIAPDKVTFVALLSSCSHAGLIEKGLHFYDIMLQDYNISPGKEHYSCVVDLYS 597

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           R+G+LD AWK ++ + D     + + + G LL AC    + ++ +L A++  E +P + G
Sbjct: 598 RSGKLDDAWKFVSSLQDE----AEIDVLGCLLGACRVHNRMDIAELVAKRIFEQNPSDPG 653

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
            +++LSN+YA   MW  + ++R +++ + LK   G S I
Sbjct: 654 YHILLSNIYANAGMWSHVTRIRTMIENRSLKNKTGNSLI 692



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 145/327 (44%), Gaps = 10/327 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           LG   +  + +  R+   +  +I      G  L A+  FS M   G   D+  + + + A
Sbjct: 197 LGEARSVFESMLERDLAAWTAMIGGAVHAGDWLDAMSLFSRMRSEGFLADSVIIATVIPA 256

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
               K+ R G  +     + G      V +AL+D+Y K   +  A+ +F  I  K+ V  
Sbjct: 257 CGRAKELRTGMVLHGCAVRCGVGDDTCVSNALVDMYCKCGCLGMADRVFWSIGFKDVVSW 316

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           + L++GY +       + L   M   GL  +  T++++L + + +     G+++H + +R
Sbjct: 317 STLIAGYSQNGKDHVSVNLFTEMVTAGLKPNSNTMASILPSLSEMKLFRHGKEIHGFSLR 376

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
                    F+ S+ I+ Y + G + +A  V  L   R       D+V+W SM+  Y  N
Sbjct: 377 N--GFDQSKFLGSAFIDFYSRQGSIREAEIVLELMPKR-------DLVIWNSMVAGYAVN 427

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G     +  + A+   G +PD V  V+V+  C+H  ++  G E   ++V  Y +      
Sbjct: 428 GNTDSALCAFRALQKVGFRPDHVTVVSVLPVCNHHSRLIQGKELHAYVVRHY-MSSVCSV 486

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDR 362
            + L+D+ C+   L+K  ++   + DR
Sbjct: 487 SNALIDMYCKCCCLEKGKEIFQLVTDR 513



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 23/335 (6%)

Query: 37  GTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYALCSSLTA 95
           G   + L  +  RN   +N  I     +G    AL+T+  M   G +  D +     + A
Sbjct: 92  GRALSVLDGMPMRNSFAWNAAIKGLVDSGQFAEALETYWAMVRDGSVAADGFTYPPVIKA 151

Query: 96  STS---VKDARFGKQ-VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
             +   V+  R  ++ V+A V +     SVFV  AL+D++AK   + +A  +F+ +  ++
Sbjct: 152 CAALGVVEQGRMVRENVEADVVRGVVAPSVFVQCALVDMFAKCGCLGEARSVFESMLERD 211

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
                A++ G   A  W   + L   M + G   D   ++ ++ AC        G  +H 
Sbjct: 212 LAAWTAMIGGAVHAGDWLDAMSLFSRMRSEGFLADSVIIATVIPACGRAKELRTGMVLHG 271

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
             +R  C +G+D  + ++L++MY KCG +  A +VF   G        KDVV W++++  
Sbjct: 272 CAVR--CGVGDDTCVSNALVDMYCKCGCLGMADRVFWSIGF-------KDVVSWSTLIAG 322

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           Y +NG     + L+  M+  G KP+     +++ + S     + G E     +H + L  
Sbjct: 323 YSQNGKDHVSVNLFTEMVTAGLKPNSNTMASILPSLSEMKLFRHGKE-----IHGFSLRN 377

Query: 332 GPEHY----SCLVDLLCRAGELDKAWKLINEMLDR 362
           G +      S  +D   R G + +A  ++  M  R
Sbjct: 378 GFDQSKFLGSAFIDFYSRQGSIREAEIVLELMPKR 412



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 125/271 (46%), Gaps = 28/271 (10%)

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           + + L+  YA+L     A  + D +P++NS   NA + G  ++  +A  LE    M   G
Sbjct: 77  LAAQLVHAYARLGEAGRALSVLDGMPMRNSFAWNAAIKGLVDSGQFAEALETYWAMVRDG 136

Query: 183 -LDYDHFTLSALLRACAGLSAAEFGR----QVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
            +  D FT   +++ACA L   E GR     V A ++R    +   VF+Q +L++M+ KC
Sbjct: 137 SVAADGFTYPPVIKACAALGVVEQGRMVRENVEADVVRGV--VAPSVFVQCALVDMFAKC 194

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G + +A  VF       E  + +D+  WT+M+G     G + + + L+  M   G   D 
Sbjct: 195 GCLGEARSVF-------ESMLERDLAAWTAMIGGAVHAGDWLDAMSLFSRMRSEGFLADS 247

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAW 353
           V   TVI AC    +++ G+     ++H   +  G    +C    LVD+ C+ G L  A 
Sbjct: 248 VIIATVIPACGRAKELRTGM-----VLHGCAVRCGVGDDTCVSNALVDMYCKCGCLGMAD 302

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           ++   +     G   V  W  L++     GK
Sbjct: 303 RVFWSI-----GFKDVVSWSTLIAGYSQNGK 328


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 137/445 (30%), Positives = 223/445 (50%), Gaps = 45/445 (10%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +L +       +  ++ + +N +I+ F + GSP  AL+ F  M    +      +   L+
Sbjct: 183 DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 242

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A   ++D  FG++V +++ ++    ++ + +A++D+Y K   I DA+ +FD +  K++V 
Sbjct: 243 ACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 302

Query: 155 ANALLSGYCEAKLWAGGLELVRLMP--------------------------------ALG 182
              +L GY  ++ +    E++  MP                                   
Sbjct: 303 WTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKN 362

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  +  TL + L ACA + A E GR +H+Y+ +    +  + ++ S+LI MY KCG + K
Sbjct: 363 IKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKM--NFYVTSALIHMYSKCGDLEK 420

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A +VFN    R       DV +W++M+G    +G   E + ++  M     KP+ V F  
Sbjct: 421 AREVFNSVEKR-------DVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTN 473

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           V  ACSHTG V      F  M   Y + P  +HY+C+VD+L R+G L+KA K I  M   
Sbjct: 474 VFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAM--- 530

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422
                S S+WGALL AC       L ++A  + LEL+P N G +V+LSN+YAK   WD +
Sbjct: 531 -PIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNV 589

Query: 423 GQLRELMKEKGLKKDVGCSWIEVTG 447
            +LR+ M+  GLKK+ GCS IE+ G
Sbjct: 590 SELRKHMRVTGLKKEPGCSSIEIDG 614



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 170/387 (43%), Gaps = 45/387 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           N   +N +I  +     P+ ++  F  M       + + Y     + A+  V     G+ 
Sbjct: 95  NSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQS 154

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +     KS   S VFV ++LI  Y     +  A  +F  I  K+ V  N++++G+ +   
Sbjct: 155 LHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS 214

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               LEL + M +  +   H T+  +L ACA +   EFGR+V +Y+     N+  ++ + 
Sbjct: 215 PDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNV--NLTLA 272

Query: 228 SSLIEMYGKCGLVTKALQVFN------------------------LAGHRLEGEINKDVV 263
           +++++MY KCG +  A ++F+                         A   L     KD+V
Sbjct: 273 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIV 332

Query: 264 LWTSMLGVYGRNGYFKEVIKLY-EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
            W +++  Y +NG   E + ++ E  L    K +++  V+ +SAC+  G ++LG     W
Sbjct: 333 AWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELG----RW 388

Query: 323 MVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS- 377
            +H Y  + G +      S L+ +  + G+L+KA ++ N +  R      V +W A++  
Sbjct: 389 -IHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKR-----DVFVWSAMIGG 442

Query: 378 -ACHDCGKFELGKLAAQKALELDPHNV 403
            A H CG   +      +   + P+ V
Sbjct: 443 LAMHGCGSEAVDMFYKMQEANVKPNGV 469



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 133/287 (46%), Gaps = 22/287 (7%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYA--KLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           KQ  AH+ ++G  S  +  S L  + A      +  A  +FDEIP  NS   N L+  Y 
Sbjct: 48  KQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYA 107

Query: 164 EA-----KLWAGGLELVRLMPALGLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
                   +WA     + ++ +    Y + +T   L++A A +S+   G+ +H   I+  
Sbjct: 108 SGPDPVCSIWA----FLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSA 163

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
             +G+DVF+ +SLI  Y  CG +  A +VF            KDVV W SM+  + + G 
Sbjct: 164 --VGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE-------KDVVSWNSMINGFVQKGS 214

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
             + ++L++ M     K   V  V V+SAC+    ++ G     + + + ++       +
Sbjct: 215 PDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSY-IEENRVNVNLTLAN 273

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            ++D+  + G ++ A +L + M ++ + + +  + G  +S  ++  +
Sbjct: 274 AMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAR 320


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 232/453 (51%), Gaps = 31/453 (6%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNP----LPFNV 56
            +HAH  +TGL         S L +  T  R     G +    K  + + P    + +  
Sbjct: 159 QIHAHSIKTGL--------SSNLFVKNTLMRFYAVSGFIEAVEKVFD-QGPHWDLISWTT 209

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +I  + + G P  A+  F  M+      D   L   L+A + + D   GK++ A++    
Sbjct: 210 LIQAYSKMGYPSEAIAAFFRMNCTA---DRMTLVVVLSACSQLGDFTLGKKILAYMDHHL 266

Query: 117 W--LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           +   S VF+G+AL+D+Y K    H A  +F  +PVKN V  N+++SG     L+   L +
Sbjct: 267 FDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHM 326

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M  +GL  D  TL  +L +CA L   E G+ VH+Y+ +   ++  D ++ ++L++MY
Sbjct: 327 FRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKN--HMKADGYVANALVDMY 384

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG + +A  VF       +    KDV  +T+M+  +  +G     + ++  M   G +
Sbjct: 385 AKCGSIDQAFMVF-------QAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVR 437

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           PD V  V V+SACSH G ++ G  +F+ M   Y L+P  EHY C+VDLL RAG + +A  
Sbjct: 438 PDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEA 497

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
             N+M          S+WG+LL AC    K ELG+   QK +E++P   G Y+++SN+Y+
Sbjct: 498 FTNKMPI----VPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYS 553

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
               W +  + R+ MK+  +KK  GCS IEV G
Sbjct: 554 SANRWRDALKWRKAMKQNNIKKTPGCSSIEVDG 586



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 152/317 (47%), Gaps = 21/317 (6%)

Query: 49  RNPL-PFNVVISDF-CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +NP+  FN +I      N +  +    +  M + G+  DTY L   L A +         
Sbjct: 99  QNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEAL 158

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+ AH  K+G  S++FV + L+  YA    I   E +FD+ P  + +    L+  Y +  
Sbjct: 159 QIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMG 218

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
             +   E +     +    D  TL  +L AC+ L     G+++ AYM     ++ +DVF+
Sbjct: 219 YPS---EAIAAFFRMNCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFL 275

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L++MY KCG    A Q+F+L          K++V W SM+      G FKE + ++ 
Sbjct: 276 GNALLDMYLKCGQPHLARQLFHLMP-------VKNLVSWNSMISGLAHQGLFKEALHMFR 328

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--KLEPGPEHY--SCLVDL 342
            M   G KPD V  V V+++C++ G ++LG    +W VH Y  K     + Y  + LVD+
Sbjct: 329 RMQTMGLKPDSVTLVGVLNSCANLGDLELG----KW-VHSYIDKNHMKADGYVANALVDM 383

Query: 343 LCRAGELDKAWKLINEM 359
             + G +D+A+ +   M
Sbjct: 384 YAKCGSIDQAFMVFQAM 400


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 219/400 (54%), Gaps = 17/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           RN   +N  IS+   +G P  A++ F  F  + G   ++   C+ L A +       G Q
Sbjct: 122 RNLETWNAFISNSVTDGRPREAIEAFIEFRRIDG-HPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +   V +SG+ + V V + LID Y K   I  +E++F E+  KN+V   +L++ Y +   
Sbjct: 181 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 240

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                 L        ++   F +S++L ACAG++  E GR +HA+ ++ C  +   +F+ 
Sbjct: 241 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC--VERTIFVG 298

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+L++MYGKCG +  + Q F+           K++V   S++G Y   G     + L+E 
Sbjct: 299 SALVDMYGKCGCIEDSEQAFDEMPE-------KNLVTRNSLIGGYAHQGQVDMALALFEE 351

Query: 288 MLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           M   G    P+ + FV+++SACS  G V+ G++ F+ M   Y +EPG EHYSC+VD+L R
Sbjct: 352 MAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGR 411

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG +++A++ I +M  +     ++S+WGAL +AC   GK +LG LAA+   +LDP + G 
Sbjct: 412 AGMVERAYEFIKKMPIQ----PTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGN 467

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +V+LSN +A    W E   +RE +K  G+KK  G SWI V
Sbjct: 468 HVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITV 507



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 149/377 (39%), Gaps = 40/377 (10%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+    RN + +  +IS   +NG    AL  F  M   G+  + +    +  A  S++  
Sbjct: 15  LRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLP 74

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GKQ+ A   K G +  VFVG +  D+Y K  L  DA  +FDEIP +N    NA +S  
Sbjct: 75  VTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNS 134

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                    +E       +    +  T  A L AC+       G Q+H  ++R       
Sbjct: 135 VTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRS--GFDT 192

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV + + LI+ YGKC  +  +  +F   G        K+ V W S++  Y +N   ++  
Sbjct: 193 DVSVCNGLIDFYGKCKQIRSSEIIFTEMG-------TKNAVSWCSLVAAYVQNHEDEKAS 245

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH----------------- 325
            LY     +  +  +    +V+SAC+    ++LG       V                  
Sbjct: 246 VLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMY 305

Query: 326 ---------DYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM- 371
                    +   +  PE      + L+      G++D A  L  EM  RG G +   M 
Sbjct: 306 GKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMT 365

Query: 372 WGALLSACHDCGKFELG 388
           + +LLSAC   G  E G
Sbjct: 366 FVSLLSACSRAGAVENG 382



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 9/189 (4%)

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y+KL     A L+    P +N V   +L+SG  +   ++  L     M   G+  + FT
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
                +A A L     G+Q+HA  ++  C    DVF+  S  +MY K  L   A ++F+ 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVK--CGRILDVFVGCSAFDMYCKTRLRDDARKLFDE 118

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
              R       ++  W + +     +G  +E I+ +         P+ + F   ++ACS 
Sbjct: 119 IPER-------NLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSD 171

Query: 310 TGQVKLGIE 318
              + LG++
Sbjct: 172 WLHLNLGMQ 180


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 236/423 (55%), Gaps = 17/423 (4%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           LM  Y  CR+ +    + + ++    ++ + +  +I+ + ++   + AL+ F      GI
Sbjct: 407 LMDMYMKCRYIEYSAHVFDRMRI---KDHISWTTIITCYAQSSRHIEALEIFREAQKEGI 463

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
            +D   + S L A + ++     KQ+  +  ++G L  V V + +ID+Y +   ++ +  
Sbjct: 464 KVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLV-VKNRIIDIYGECGEVYHSLK 522

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           MF+ +  K+ V   ++++ Y  + L    L L   M +  +  D   L ++L A  GLS+
Sbjct: 523 MFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSS 582

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G++VH ++IR+  N   +  + SSL++MY  CG ++ AL+VFN           KD+
Sbjct: 583 LAKGKEVHGFLIRR--NFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVK-------CKDM 633

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           VLWT+M+   G +G+ K+ I L++ ML  G  PD V+F+ ++ ACSH+  V  G  Y + 
Sbjct: 634 VLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDM 693

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M+  Y+LEP  EHY+C+VDLL R+G+ ++A++ I  M  +     SV +W +LL AC   
Sbjct: 694 MMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLK---PKSV-VWCSLLGACRVH 749

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
              EL  +AA + LEL+P N G YV++SN++A+   W+   ++R  + E+GL+KD  CSW
Sbjct: 750 KNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSW 809

Query: 443 IEV 445
           IE+
Sbjct: 810 IEI 812



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 193/410 (47%), Gaps = 23/410 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHAH   TG L        ++L+  Y  C    +   L      ++ R    +N +I  
Sbjct: 79  QVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLL---FDGMSSRTVFSWNALIGA 135

Query: 61  FCRNGSPLYALKTFSFMHVH---GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           +  +GS   AL  +  M +    G+  D   L S L AS    D R G +V     K G 
Sbjct: 136 YLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGL 195

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA-NALLSGYCEAKLWAGGLELVR 176
             S FV +ALI +YAK  ++  A  +F+ +     V + N+++SG  +  ++   L+L R
Sbjct: 196 DRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFR 255

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ-SSLIEMYG 235
            M    L  + +T   +L+ C  L+    GR++HA +++     G++V +Q ++L+ MY 
Sbjct: 256 GMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKS----GSEVNIQCNALLVMYT 311

Query: 236 KCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
           KCG V  AL+VF         EI+ KD + W SML  Y +NG + E I+    ML  G +
Sbjct: 312 KCGRVDSALRVFR--------EIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQ 363

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           PD    V++ SA  H G +  G E   + +   +L+   +  + L+D+  +   ++ +  
Sbjct: 364 PDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQ-RLDSDTQVGNTLMDMYMKCRYIEYSAH 422

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           + + M  + H S +  +     S+ H     E+ + A ++ +++DP  +G
Sbjct: 423 VFDRMRIKDHISWTTIITCYAQSSRH-IEALEIFREAQKEGIKVDPMMIG 471



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 180/390 (46%), Gaps = 23/390 (5%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           L++ YT C     + +     + ++ ++ + +N ++S + +NG    A++  S M   G 
Sbjct: 306 LLVMYTKC---GRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGF 362

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             D   + S  +A   +     GK+V A+  K    S   VG+ L+D+Y K   I  +  
Sbjct: 363 QPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAH 422

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD + +K+ +    +++ Y ++      LE+ R     G+  D   + ++L AC+GL  
Sbjct: 423 VFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLET 482

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
               +Q+H Y IR   N   D+ +++ +I++YG+CG V  +L++F       E    KD+
Sbjct: 483 ILLAKQLHCYAIR---NGLLDLVVKNRIIDIYGECGEVYHSLKMF-------ETVEQKDI 532

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V WTSM+  Y  +G   E + L+  M     +PD VA V+++ A      +  G E   +
Sbjct: 533 VTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGF 592

Query: 323 MV-HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC-- 379
           ++  ++ +E      S LVD+    G L  A K+ N +         + +W A+++A   
Sbjct: 593 LIRRNFHMEEAI--VSSLVDMYSGCGSLSGALKVFNAV-----KCKDMVLWTAMINATGM 645

Query: 380 HDCGKFELGKLAAQKALELDPHNVGIYVML 409
           H  GK  +          + P +V    +L
Sbjct: 646 HGHGKQAIDLFKRMLQTGVTPDHVSFLALL 675



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 171/364 (46%), Gaps = 21/364 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +N +IS   +NG  L AL  F  M    + +++Y     L   T +     G+++
Sbjct: 229 RDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGREL 288

Query: 109 QAHVTKSGWLSSVFVG-SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
            A + KSG  S V +  +AL+ +Y K   +  A  +F EI  K+ +  N++LS Y +  L
Sbjct: 289 HAALLKSG--SEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGL 346

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +A  +E +  M   G   DH  + +L  A   L     G++VHAY I++   L +D  + 
Sbjct: 347 YAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQ--RLDSDTQVG 404

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L++MY KC  +  +  VF+    R+     KD + WT+++  Y ++    E ++++  
Sbjct: 405 NTLMDMYMKCRYIEYSAHVFD----RMR---IKDHISWTTIITCYAQSSRHIEALEIFRE 457

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
               G K D +   +++ ACS    + L  +   + + +  L+   ++   ++D+    G
Sbjct: 458 AQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNR--IIDIYGECG 515

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGI 405
           E+  + K+   +  +      +  W ++++   + G     L   A  ++ ++ P +V +
Sbjct: 516 EVYHSLKMFETVEQK-----DIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVAL 570

Query: 406 YVML 409
             +L
Sbjct: 571 VSIL 574



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 23/200 (11%)

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L   A   A   G QVHA+ +      G+D F+ + L+ MYGKCG V  A  +F     
Sbjct: 64  VLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLF----- 118

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM---NGTKPDEVAFVTVISACSH 309
             +G  ++ V  W +++G Y  +G   E + +Y AM +   +G  PD     +V+ A   
Sbjct: 119 --DGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGV 176

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHG 365
            G  + G E     VH   ++ G +  +     L+ +  + G LD A ++   M    H 
Sbjct: 177 EGDGRCGCE-----VHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELM----HD 227

Query: 366 SSSVSMWGALLSACHDCGKF 385
              V+ W +++S C   G F
Sbjct: 228 GRDVASWNSMISGCLQNGMF 247


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 219/400 (54%), Gaps = 17/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           RN   +N  IS+   +G P  A++ F  F  + G   ++   C+ L A +       G Q
Sbjct: 172 RNLETWNAFISNSVTDGRPREAIEAFIEFRRIDG-HPNSITFCAFLNACSDWLHLNLGMQ 230

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +   V +SG+ + V V + LID Y K   I  +E++F E+  KN+V   +L++ Y +   
Sbjct: 231 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 290

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                 L        ++   F +S++L ACAG++  E GR +HA+ ++ C  +   +F+ 
Sbjct: 291 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC--VERTIFVG 348

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+L++MYGKCG +  + Q F+           K++V   S++G Y   G     + L+E 
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPE-------KNLVTRNSLIGGYAHQGQVDMALALFEE 401

Query: 288 MLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           M   G    P+ + FV+++SACS  G V+ G++ F+ M   Y +EPG EHYSC+VD+L R
Sbjct: 402 MAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGR 461

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG +++A++ I +M  +     ++S+WGAL +AC   GK +LG LAA+   +LDP + G 
Sbjct: 462 AGMVERAYEFIKKMPIQ----PTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGN 517

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +V+LSN +A    W E   +RE +K  G+KK  G SWI V
Sbjct: 518 HVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITV 557



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 149/377 (39%), Gaps = 40/377 (10%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+    RN + +  +IS   +NG    AL  F  M   G+  + +    +  A  S++  
Sbjct: 65  LRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLP 124

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GKQ+ A   K G +  VFVG +  D+Y K  L  DA  +FDEIP +N    NA +S  
Sbjct: 125 VTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNS 184

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                    +E       +    +  T  A L AC+       G Q+H  ++R       
Sbjct: 185 VTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRS--GFDT 242

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV + + LI+ YGKC  +  +  +F   G        K+ V W S++  Y +N   ++  
Sbjct: 243 DVSVCNGLIDFYGKCKQIRSSEIIFTEMG-------TKNAVSWCSLVAAYVQNHEDEKAS 295

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH----------------- 325
            LY     +  +  +    +V+SAC+    ++LG       V                  
Sbjct: 296 VLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMY 355

Query: 326 ---------DYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM- 371
                    +   +  PE      + L+      G++D A  L  EM  RG G +   M 
Sbjct: 356 GKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMT 415

Query: 372 WGALLSACHDCGKFELG 388
           + +LLSAC   G  E G
Sbjct: 416 FVSLLSACSRAGAVENG 432



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 93  LTASTSVKDARFGKQVQAHVTKS-GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           L  + S    R G+ V A + K+       F+ + LI++Y+KL     A L+    P +N
Sbjct: 13  LKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARN 72

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V   +L+SG  +   ++  L     M   G+  + FT     +A A L     G+Q+HA
Sbjct: 73  VVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHA 132

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
             ++  C    DVF+  S  +MY K  L   A ++F+    R       ++  W + +  
Sbjct: 133 LAVK--CGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPER-------NLETWNAFISN 183

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
              +G  +E I+ +         P+ + F   ++ACS    + LG++
Sbjct: 184 SVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 230


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 204/347 (58%), Gaps = 21/347 (6%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+ A   K+   S+ FV +AL+ +YAK   I DA  MF+ +P KN+V  +++++GY +  
Sbjct: 172 QLHAFSIKAAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNG 231

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L L      +G D D F +S+ + ACAGL+    G+QVHA   +     G+++++
Sbjct: 232 FHDEALLLFHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKS--GFGSNIYV 289

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLY 285
            SSLI+MY KCG + +A  VF       EG +  + +VLW +M+  + R+   +E + L+
Sbjct: 290 ASSLIDMYAKCGCIREAYLVF-------EGFVEVRSIVLWNAMISGFARHALAQEAMILF 342

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M   G  PD+V +V+V++ACSH G  + G +YF+ MV  + L P   HYSC++D+L R
Sbjct: 343 EKMQQRGFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGR 402

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGA-------LLSACHDCGKFELGKLAAQKALEL 398
           AG + KA+ LI  M      +++ SMWG+       + ++C   G  E  ++AA+   E+
Sbjct: 403 AGLVQKAYDLIGRM----SFNATSSMWGSVRGLSXLIKASCRIYGNIEFAEIAAKHLFEM 458

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +P+N G +++L+N+YA     DE+ + R+L++E  ++K+ G SWIE+
Sbjct: 459 EPNNAGNHILLANIYAANKKSDEVARARKLLRETDVRKERGTSWIEI 505



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 133/272 (48%), Gaps = 13/272 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA   +  +   C +   + L+  Y  C   K+   +    + +  +N + ++ +++ 
Sbjct: 172 QLHAFSIKAAIDSNCFV--XTALLHVYAKCSSIKDASQM---FESMPEKNAVTWSSMMAG 226

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +NG    AL  F    + G   D + + S+++A   +     GKQV A   KSG+ S+
Sbjct: 227 YVQNGFHDEALLLFHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSN 286

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDE-IPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           ++V S+LID+YAK   I +A L+F+  + V++ V  NA++SG+    L    + L   M 
Sbjct: 287 IYVASSLIDMYAKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQ 346

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
             G   D  T  ++L AC+ +   E G++    M+R+  NL   V   S +I++ G+ GL
Sbjct: 347 QRGFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQ-HNLSPSVLHYSCMIDILGRAGL 405

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           V KA   ++L G       N    +W S+ G+
Sbjct: 406 VQKA---YDLIGRM---SFNATSSMWGSVRGL 431



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 124/273 (45%), Gaps = 14/273 (5%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+   A + + G    +   + LI++Y+K  L+H      DE+ VK+ +  N  +    +
Sbjct: 69  GRACHAQIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXDEMLVKSLILXNTRIGALTQ 128

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L+L+  M      ++ FT+S++L  CA   A     Q+HA+ I+    + ++ 
Sbjct: 129 NAEDRKALKLLIRMQREVTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAA--IDSNC 186

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++L+ +Y KC  +  A Q+F       E    K+ V W+SM+  Y +NG+  E + L
Sbjct: 187 FVXTALLHVYAKCSSIKDASQMF-------ESMPEKNAVTWSSMMAGYVQNGFHDEALLL 239

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +    + G   D     + +SAC+    +  G +    M H           S L+D+  
Sbjct: 240 FHNAQLMGFDQDPFNISSAVSACAGLATLVEG-KQVHAMSHKSGFGSNIYVASSLIDMYA 298

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + G + +A+ +    ++      S+ +W A++S
Sbjct: 299 KCGCIREAYLVFEGFVE----VRSIVLWNAMIS 327



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 15/150 (10%)

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           LS   EAK  +  +E V  M  +        L  LL+ CA   ++  GR  HA +IR   
Sbjct: 28  LSVISEAKPESSKVENVVHMDRVS------NLHYLLQLCAKTGSSMGGRACHAQIIR--I 79

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
            L  D+   + LI MY KC LV    +       + +  + K ++L  + +G   +N   
Sbjct: 80  GLEMDILTSTMLINMYSKCSLVHSTRK-------KXDEMLVKSLILXNTRIGALTQNAED 132

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           ++ +KL   M    T  +E    +V+  C+
Sbjct: 133 RKALKLLIRMQREVTPFNEFTISSVLCNCA 162


>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 542

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 152/478 (31%), Positives = 235/478 (49%), Gaps = 50/478 (10%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA+  +TGL  I   +  SR++         +N   L      +N +NP  +N +I  
Sbjct: 43  QIHANLIKTGL--ISDTVAASRVLAFCCASPSDRNYAYLV--FTRINHKNPFVWNTIIRG 98

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALC--SSLTASTSVKDARFGKQVQAHVTKSGWL 118
           F R+  P  A+  F  M      +    L   S   A  S+  AR G+Q+   V K G  
Sbjct: 99  FSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLE 158

Query: 119 SSVFVGSALIDLY-------------------------------AKLLLIHDAELMFDEI 147
              F+ + ++ +Y                               AK  LI  A+ +FDE+
Sbjct: 159 DDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEM 218

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           P +N V  N+++SG+     +   LE+ R M    +  D FT+ +LL ACA L A+E GR
Sbjct: 219 PQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGR 278

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
            +H Y++R    L + V   ++LI+MY KCG   + L+VF  A         K +  W S
Sbjct: 279 WIHKYIVRNRFELNSIVI--TALIDMYCKCGCFEEGLKVFECAP-------TKQLSCWNS 329

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           M+     NG  +  + L+  +   G +PD V+F+ V++AC+H+G+V    E+F  M   Y
Sbjct: 330 MILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKY 389

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
            +EP  +HY+C+V++L  AG LD+A  LI +M   G       +W +LL+AC   G  E+
Sbjct: 390 MIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEG----DTIIWSSLLAACRKNGNVEM 445

Query: 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            K AA     LDP     YV++SN YA + +++E  + R LMKE+ ++K+VGCS IEV
Sbjct: 446 AKRAANCLKNLDPDETCGYVLMSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEV 503


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 132/400 (33%), Positives = 220/400 (55%), Gaps = 13/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           ++ + +N +IS +   G+   AL+ F   M +  +  D   + + ++A         G+ 
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRH 243

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V + +   G+ S++ + +ALIDLY+K   +  A  +FD +  K+ +  N L+ GY    L
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNL 303

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF-M 226
           +   L L + M   G   +  T+ ++L ACA L A + GR +H Y+ +K   +  +V  +
Sbjct: 304 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSL 363

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           Q+SLI+MY KCG +  A QVF+ +        N+ +  W +M+  +  +G       ++ 
Sbjct: 364 QTSLIDMYAKCGDIDAAQQVFDSSMS------NRSLSTWNAMISGFAMHGRANAAFDIFS 417

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M MNG +PD++ FV ++SACSH+G + LG   F  M   Y++ P  EHY C++DLL  +
Sbjct: 418 RMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHS 477

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G   +A ++IN M     G     +W +LL AC   G  ELG+  A+K ++++P N G Y
Sbjct: 478 GLFKEAEEMINTMPMEPDG----VIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSY 533

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV-GCSWIEV 445
           V+LSN+YA    W+E+ ++R L+ +KG+KK V GCS IE+
Sbjct: 534 VLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEI 573



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 204/450 (45%), Gaps = 61/450 (13%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA   +TGL      +  S+L+       H        +    +   N L +N +    
Sbjct: 7   IHAQMIKTGLHNTNYAL--SKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +  P+ ALK +  M   G+  D+Y     L +    K  + G+Q+  HV K G+   +
Sbjct: 65  ALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDI 124

Query: 122 FVGSALIDLYAKLLLIHDA-------------------------------ELMFDEIPVK 150
           +V ++LI +YA+   + DA                               + +FDEIP K
Sbjct: 125 YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGK 184

Query: 151 NSVCANALLSGYCEAKLWAGGLELVR-LMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
           + V  NA++SGY E   +   LEL + +M    +  D  T+  ++ ACA   + E GR V
Sbjct: 185 DVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHV 244

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H+++        +++ + ++LI++Y K G V  A ++F       +G  NKDV+ W +++
Sbjct: 245 HSWI--NDHGFASNLKIVNALIDLYSKFGEVETACELF-------DGLWNKDVISWNTLI 295

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY-- 327
           G Y     +KE + L++ ML +G  P++V  ++++ AC+H G + +G     W +H Y  
Sbjct: 296 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG----RW-IHVYIN 350

Query: 328 -KLEPGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACH 380
            KL+    + S     L+D+  + G++D A     ++ D    + S+S W A++S  A H
Sbjct: 351 KKLKGVVTNVSSLQTSLIDMYAKCGDIDAA----QQVFDSSMSNRSLSTWNAMISGFAMH 406

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLS 410
                     +  +   ++P ++    +LS
Sbjct: 407 GRANAAFDIFSRMRMNGIEPDDITFVGLLS 436


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 137/406 (33%), Positives = 220/406 (54%), Gaps = 15/406 (3%)

Query: 40  TNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           +N    +  +N + +N ++++F +N   L A+     M   G   ++    + L A   +
Sbjct: 265 SNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARI 324

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
              R GK++ A   ++G    +FV +AL D+YAK   ++ A  +F +I +++ V  N L+
Sbjct: 325 GFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILI 383

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
            GY +    +  L L   M   G+  D  +   ++ ACA L+A + G++VH   +RK  +
Sbjct: 384 IGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRK--H 441

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L   +F+ ++L++ Y KCG +  A +VF     R       D   W SM+  YG  G   
Sbjct: 442 LHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSR-------DTASWNSMILGYGMLGELT 494

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
             I L+EAM  +G + D V+++ V+SACSH G V+ G +YFE M     ++P   HY+C+
Sbjct: 495 IAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHM-QVQNIKPTQMHYACM 553

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL RAG +++A KLI  +          ++WGALL AC   G  EL   AA+   +L 
Sbjct: 554 VDLLGRAGLIEEAVKLIESLPIE----PDANVWGALLGACRIHGYIELAHWAAEHLFKLK 609

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           P + G Y +LSN+YA+   WDE  Q+R+LMK +G KK+ GCSW+++
Sbjct: 610 PQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQI 655



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 13/304 (4%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFS 75
           F S + +  T      N G L +  +  +    R+ + +N VI  F  +G    A+  F 
Sbjct: 38  FDSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFC 97

Query: 76  FMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
            M++  G   +  ++ S L     ++D   G+Q+  +V K+G  S V VG+AL+D+Y K 
Sbjct: 98  EMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKC 157

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
             + D+  +FDEI  +N V  NA+++     +     LE+ RLM   G+  +  T S++L
Sbjct: 158 GYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSML 217

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
                L   +FG+++H + +R    L +D+F+ ++LI+MY K G   +A  VFN  G   
Sbjct: 218 PVLVELKLFDFGKEIHGFSLR--FGLESDIFVANALIDMYAKSGRSLQASNVFNQIGE-- 273

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                K++V W +M+  + +N      + L   M  +G  P+ V F  V+ AC+  G ++
Sbjct: 274 -----KNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLR 328

Query: 315 LGIE 318
            G E
Sbjct: 329 PGKE 332



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 161/321 (50%), Gaps = 11/321 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN + +N +I+          AL+ F  M   G+  ++    S L     +K   FG
Sbjct: 170 ISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFG 229

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++     + G  S +FV +ALID+YAK      A  +F++I  KN V  NA+++ + + 
Sbjct: 230 KEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQN 289

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +L    ++LVR M A G   +  T + +L ACA +     G+++HA  IR   ++  D+F
Sbjct: 290 RLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSV--DLF 347

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L +MY KCG +  A +VF ++   L  E++ ++++       Y +     E ++L+
Sbjct: 348 VSNALTDMYAKCGCLNLARRVFKIS---LRDEVSYNILIIG-----YSQTTNCSESLRLF 399

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M + G K D V+++ VISAC++   +K G E     V  + L       + L+D   +
Sbjct: 400 LEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKH-LHTHLFIANALLDFYIK 458

Query: 346 AGELDKAWKLINEMLDRGHGS 366
            G +D A K+  ++  R   S
Sbjct: 459 CGRIDLAGKVFRQIPSRDTAS 479



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 156/331 (47%), Gaps = 28/331 (8%)

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G+ LD +     L A       + G+++   V K G+ S VFVG+ L+  Y     + D 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAG 199
           + +FDE+  ++ V  N+++  +     +A  + L   +    G   +  ++ ++L  CAG
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L     GRQ+H Y+++    L + V + ++L+++YGKCG V  + +VF+    R      
Sbjct: 122 LEDGVTGRQIHCYVVK--TGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISER------ 173

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
            + V W +++         ++ ++++  M+  G KP+ V F +++        V+L +  
Sbjct: 174 -NGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVL-----VELKLFD 227

Query: 320 FEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           F   +H + L  G E      + L+D+  ++G   +A  + N++     G  ++  W A+
Sbjct: 228 FGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQI-----GEKNIVSWNAM 282

Query: 376 LSACHDCGKFELGKLAAQKALELD---PHNV 403
           + A     + EL  +   + ++ D   P++V
Sbjct: 283 V-ANFAQNRLELAAVDLVRQMQADGEIPNSV 312



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 105/203 (51%), Gaps = 24/203 (11%)

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
           +G+  D  T   +L+ACA   + + GR++H  + +      +DVF+ ++L+  YG CG +
Sbjct: 1   MGVRLDDHTFPFVLKACADSLSVQKGREIHGVVFK--LGFDSDVFVGNTLLLFYGNCGGL 58

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY-EAMLMNGTKPDEVA 299
               +VF+         + +DVV W S++GV+  +G++ E I L+ E  L +G +P+ V+
Sbjct: 59  KDVKRVFDEM-------LERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVS 111

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKL 355
            V+V+  C+       G +     +H Y ++ G +      + LVD+  + G +  + ++
Sbjct: 112 IVSVLPVCAGLEDGVTGRQ-----IHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRV 166

Query: 356 INEMLDRGHGSSSVSMWGALLSA 378
            +E+ +R   S     W A++++
Sbjct: 167 FDEISERNGVS-----WNAIITS 184


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 132/433 (30%), Positives = 226/433 (52%), Gaps = 13/433 (3%)

Query: 13  LICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALK 72
           L+C    +S L+  Y+ C H +    + + +   +  +   +N V++    +G    A++
Sbjct: 148 LVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVE 207

Query: 73  TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
               M    +  D       +     ++D + G +V A + + G +   FVGS LID+Y 
Sbjct: 208 VLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYG 267

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
           K   + +A  +FD +  +N V   AL++ Y +   +   L L   M   G   + +T + 
Sbjct: 268 KCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAV 327

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           LL ACAG++A   G  +HA + +      N V ++++LI MY K G +  +  VF     
Sbjct: 328 LLNACAGIAALRHGDLLHARVEK--LGFKNHVIVRNALINMYSKSGSIDSSYNVFT---- 381

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
                I +D++ W +M+  Y  +G  K+ +++++ M+     P+ V F+ V+SA SH G 
Sbjct: 382 ---DMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGL 438

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           VK G  Y   ++ ++K+EPG EHY+C+V LL RAG LD+A       +        V  W
Sbjct: 439 VKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEA----ENFMKTTQVKWDVVAW 494

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
             LL+ACH    ++LG+  A+  L++DPH+VG Y +LSN+YAK   WD +  +R+LM+E+
Sbjct: 495 RTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRER 554

Query: 433 GLKKDVGCSWIEV 445
            +KK+ G SW+++
Sbjct: 555 NIKKEPGASWLDI 567



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 136/298 (45%), Gaps = 24/298 (8%)

Query: 97  TSVKDARFGKQVQAHV---TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
             VK   FGK + A      ++   S +   ++L+ LY K   +  A  +FD +P++N V
Sbjct: 23  ADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVV 82

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
             N L++GY         L L + M +L     + +  +  L AC+     + G Q H  
Sbjct: 83  SWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGL 142

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           + +    L    +++S+L+ MY +C  V  ALQV +     + GE   D+  + S+L   
Sbjct: 143 LFK--FGLVCHQYVKSALVHMYSRCSHVELALQVLD----TVPGEHVNDIFSYNSVLNAL 196

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
             +G  +E +++   M+      D V +V V+  C+    ++LG+      VH   L  G
Sbjct: 197 VESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLR-----VHARLLRGG 251

Query: 333 P--EHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
              + +  S L+D+  + GE+  A  + + + +R     +V +W AL++A    G FE
Sbjct: 252 LMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNR-----NVVVWTALMTAYLQNGYFE 304



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 24/198 (12%)

Query: 197 CAGLSAAEFGRQVHA-YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           CA +    FG+ +HA ++IR   +  + +   +SL+ +Y KCG +  A  +F+    R  
Sbjct: 22  CADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLR-- 79

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVK 314
                +VV W  ++  Y   G   EV+ L++ M+ +    P+E  F T +SACSH G+VK
Sbjct: 80  -----NVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVK 134

Query: 315 LGIE------YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
            G++       F  + H Y         S LV +  R   ++ A ++++ +   G   + 
Sbjct: 135 EGMQCHGLLFKFGLVCHQYV-------KSALVHMYSRCSHVELALQVLDTV--PGEHVND 185

Query: 369 VSMWGALLSACHDCGKFE 386
           +  + ++L+A  + G+ E
Sbjct: 186 IFSYNSVLNALVESGRGE 203


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 147/443 (33%), Positives = 225/443 (50%), Gaps = 47/443 (10%)

Query: 37  GTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G+L +  +F   +  RN + +N +I  + + G    A   F  M   G+  D + L S L
Sbjct: 163 GSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLL 222

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A +S  +   G+ V  H+  SG      +G+AL+D+Y K   +  A   FD +P+KN V
Sbjct: 223 FACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVV 282

Query: 154 ------CA-------------------------NALLSGYCEAKLWAGGLELVRLMPALG 182
                 CA                         NA++S Y +       L+L   M +LG
Sbjct: 283 TWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLG 342

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D FTL+ +L AC        G+ +H Y+     + G  V + +SL++MY +CG V  
Sbjct: 343 ITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPG--VTLLNSLLDMYARCGQVDT 400

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A+ +F           NK+V+ W  ++G    +G  +E +  +  M+ +   PDE+ FV 
Sbjct: 401 AIGLFTEMP-------NKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVG 453

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           ++SACSH G ++ G  YFE M   Y +EP  EHY C+VDLL R G L KA  LI +M  +
Sbjct: 454 LLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIK 513

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422
                 V +WGALL AC   G  E+GKL  ++ LEL+    G++V++ NL+ +   W+++
Sbjct: 514 ----PDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFVLICNLFYETNQWEDM 569

Query: 423 GQLRELMKEKGLKKDVGCSWIEV 445
            +LR+LMKE+G KKD+G S IEV
Sbjct: 570 KKLRKLMKEQGTKKDMGVSSIEV 592



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 175/406 (43%), Gaps = 39/406 (9%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLP----FNV 56
            +HAH    G   +  +   S+L+  Y T       G L +  +  + R P P    +N 
Sbjct: 28  QIHAHLVVHGFSDVSSV--ASQLIASYCTLSAGDRDGGLCHARRLFD-RIPEPDRFMYNT 84

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           ++  +  +  P  AL+    +   GI  + + L   L A T+V+           V K G
Sbjct: 85  LVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLG 144

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           ++  +FV +AL+  +A    + D+   F E+  +N V  N ++ GY +A   +    L  
Sbjct: 145 FVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFG 204

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M   GL  D FTL +LL AC+     E GR VH +M+     +  D  + ++L++MYGK
Sbjct: 205 EMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRV--DRILGNALLDMYGK 262

Query: 237 CGLVTKALQVFN-------------LAGHRLEGEIN-----------KDVVLWTSMLGVY 272
           CG +  A + F+             L      G ++           +++V W +M+  Y
Sbjct: 263 CGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCY 322

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            + G   E + LY  M   G  PDE     V+SAC   G +  G +     V D   +PG
Sbjct: 323 VQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASG-KMIHCYVRDNFNDPG 381

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
               + L+D+  R G++D A  L  EM ++     +V  W  ++ A
Sbjct: 382 VTLLNSLLDMYARCGQVDTAIGLFTEMPNK-----NVISWNVIIGA 422


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 140/433 (32%), Positives = 229/433 (52%), Gaps = 45/433 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ RN + + V+I+ F ++G    +++ F+ M    + LD +AL + ++   S  D   G
Sbjct: 331 LHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLG 390

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF--------------------- 144
           +Q+ +   KSG + +V V ++LI +YAK   +  AE +F                     
Sbjct: 391 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQV 450

Query: 145 ----------DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSAL 193
                     D +  KN +  NA+L  Y +      GL +  +M     +  D  T   L
Sbjct: 451 GNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTL 510

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
            + CA L A + G Q+    ++    L  D  + +++I MY KCG + +A +VF+     
Sbjct: 511 FKGCADLGANKLGDQIIGRTVK--VGLILDTSVANAVITMYSKCGRILEARKVFDFLN-- 566

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                 KD+V W +M+  Y ++G  K+ I++++ +L  G KPD +++V V+S CSH+G V
Sbjct: 567 -----VKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLV 621

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  YF+ M   + + PG EH+SC+VDLL RAG L +A  LI+EM  +     +  +WG
Sbjct: 622 QEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMK----PTAEVWG 677

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALLSAC   G  EL +LAA+   ELD  + G Y++++ +YA     D+  Q+R+LM++KG
Sbjct: 678 ALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKG 737

Query: 434 LKKDVGCSWIEVT 446
           +KK+ G SW+EV 
Sbjct: 738 IKKNPGYSWMEVN 750



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 155/330 (46%), Gaps = 39/330 (11%)

Query: 22  RLMLPYTTCRHKKNLG-----TLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKT 73
           R+  P   CR+   +G      + + L+  +    R+ + +N+++S   ++G    AL  
Sbjct: 198 RIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDM 257

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
              M   G+ LD+    SSLTA   +   R+GKQ+ A V ++      +V SAL++LYAK
Sbjct: 258 VVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAK 317

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
                +A+ +F+ +  +N+V    L++G+ +   +   +EL   M A  +  D F L+ L
Sbjct: 318 CGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATL 377

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKC-------------- 237
           +  C        GRQ+H+     C   G    V + +SLI MY KC              
Sbjct: 378 ISGCCSRMDLCLGRQLHSL----CLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMN 433

Query: 238 --------GLVTKALQVFNLAGHR--LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
                    ++T   QV N+A  R   +G   K+V+ W +MLG Y ++G  ++ +++Y  
Sbjct: 434 EKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNV 493

Query: 288 MLM-NGTKPDEVAFVTVISACSHTGQVKLG 316
           ML     +PD V +VT+   C+  G  KLG
Sbjct: 494 MLSEKDVRPDWVTYVTLFKGCADLGANKLG 523



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 143/309 (46%), Gaps = 48/309 (15%)

Query: 36  LGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-----IFLDTY 87
           LG L++ ++    +  R+   +N ++S + ++   L +L++F  MH  G      F   Y
Sbjct: 84  LGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAY 143

Query: 88  AL--CSSLTASTSVKD-----ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL---- 136
           A+  C +L   +          +FG Q  + V  +  L  +FV    +DL ++L +    
Sbjct: 144 AMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAA--LVDMFVRCGTVDLASRLFVRIKE 201

Query: 137 ------------------IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
                             +  A  +FD +P ++ V  N ++S   ++      L++V  M
Sbjct: 202 PTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDM 261

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
            + G+  D  T ++ L ACA LS+  +G+Q+HA +IR    +  D ++ S+L+E+Y KCG
Sbjct: 262 QSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCI--DPYVASALVELYAKCG 319

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
              +A  VFN    R       + V WT ++  + ++G F E ++L+  M       D+ 
Sbjct: 320 CFKEAKGVFNSLHDR-------NNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQF 372

Query: 299 AFVTVISAC 307
           A  T+IS C
Sbjct: 373 ALATLISGC 381



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 127/285 (44%), Gaps = 28/285 (9%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE-LVRLM 178
           +V   + +++ Y KL  + DA  +F  +P ++    N L+SGY +++ +   LE  V + 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
            +     + FT +  +++C  L       Q+   M++K  +  +D  + ++L++M+ +CG
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLG-MVQKFGS-QDDSDVAAALVDMFVRCG 187

Query: 239 LVTKALQVF-------------NLAG--------HRLE---GEINKDVVLWTSMLGVYGR 274
            V  A ++F              L G        H LE       +DVV W  M+    +
Sbjct: 188 TVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQ 247

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +G  +E + +   M   G + D   + + ++AC+    ++ G +    ++ +      P 
Sbjct: 248 SGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPC-IDPY 306

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
             S LV+L  + G   +A  + N + DR + + +V + G L   C
Sbjct: 307 VASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGC 351


>gi|357448257|ref|XP_003594404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483452|gb|AES64655.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 516

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 137/413 (33%), Positives = 227/413 (54%), Gaps = 22/413 (5%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G+L + LK  +    R+ + +N ++S F R G P  A++    M    + +  + LCS L
Sbjct: 107 GSLNSSLKVFDEMLHRDVVAWNTLLSCFLRCGKPDEAIRVLREMGRENVEMSEFTLCSVL 166

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV-KNS 152
               S+K   FG+QV   V   G    V + +ALID Y+ +  +H A  +F  +   K+ 
Sbjct: 167 KCCASLKALEFGRQVHGLVVAMG-RDLVVLSTALIDFYSSVGCVHHALNVFYGLKGWKDD 225

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           +  N+L+SG  +   +    +++ L+       +   L+++L  C+  S    G+QVH  
Sbjct: 226 MIHNSLVSGCIKNGRYREAFKVMSLVKP-----NAVALTSVLVCCSEESDLLTGKQVHCV 280

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            +R+      +  + + L++MY KCG + +A  VF       +G   KDV+ WT M+  Y
Sbjct: 281 AVRQ--GFTFETQLCNVLLDMYAKCGKILQAWSVF-------DGIFQKDVISWTCMIDGY 331

Query: 273 GRNGYFKEVIKLYEAMLMNGTK--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
           GRNG   E ++L+  M+ +G++  P+ V F++V+SAC H+G V+ G + F  M   Y ++
Sbjct: 332 GRNGCGYEAVELFWKMMEDGSEVLPNSVTFLSVLSACGHSGLVEEGKQCFNIMKEKYGID 391

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
           P PEHY+C +D+L RAG++++ W     M+D+G  S +  +W +LL+AC     FE G+ 
Sbjct: 392 PEPEHYACFIDILGRAGKIEEVWSAYQNMIDQG-TSPTAGVWISLLNACSLGQDFERGEF 450

Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           AA+  L+L+P+     V+ SN YA    WD +G+LR +M+EKGL K+ G SWI
Sbjct: 451 AAKSLLQLEPNKASNIVLASNFYAAIGRWDCVGELRSMMREKGLVKEAGNSWI 503



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 154/314 (49%), Gaps = 29/314 (9%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
            N +I+ + R G P+ A   F  +    I LD++     L  S +      GKQ+ + + 
Sbjct: 30  LNSLITSYIRRGHPISAFNLFLSLRRIRIDLDSHTFTPLLRPSPT----SLGKQLHSQMI 85

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K+G  S     +AL+D+Y++   ++ +  +FDE+  ++ V  N LLS +         + 
Sbjct: 86  KTGSDSGTVPKTALLDMYSRHGSLNSSLKVFDEMLHRDVVAWNTLLSCFLRCGKPDEAIR 145

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND-VFMQSSLIE 232
           ++R M    ++   FTL ++L+ CA L A EFGRQVH  ++     +G D V + ++LI+
Sbjct: 146 VLREMGRENVEMSEFTLCSVLKCCASLKALEFGRQVHGLVVA----MGRDLVVLSTALID 201

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
            Y   G V  AL VF    + L+G   KD ++  S++    +NG ++E  K     +M+ 
Sbjct: 202 FYSSVGCVHHALNVF----YGLKGW--KDDMIHNSLVSGCIKNGRYREAFK-----VMSL 250

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGE 348
            KP+ VA  +V+  CS    +  G +     VH   +  G     +  + L+D+  + G+
Sbjct: 251 VKPNAVALTSVLVCCSEESDLLTGKQ-----VHCVAVRQGFTFETQLCNVLLDMYAKCGK 305

Query: 349 LDKAWKLINEMLDR 362
           + +AW + + +  +
Sbjct: 306 ILQAWSVFDGIFQK 319


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 134/412 (32%), Positives = 217/412 (52%), Gaps = 29/412 (7%)

Query: 37  GTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G L + LK    L   + + +  +I+ + ++     AL  F  M   GI  D     S++
Sbjct: 487 GKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAI 546

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           +A   ++    G+Q+ A    SG+   + +G+AL+ LYA+   + +A   FD+I  K++V
Sbjct: 547 SACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNV 606

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N+L+SG+ ++  +   L +   M   GL+ + FT  + + A A ++    G+Q+H  M
Sbjct: 607 SWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHG-M 665

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           IRK     ++  + ++LI +Y KCG +                    D + W SM+  Y 
Sbjct: 666 IRKT-GYDSETEVSNALITLYAKCGTI--------------------DDISWNSMITGYS 704

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           ++G   E +KL+E M      P+ V FV V+SACSH G V  GI YF  M   + L P P
Sbjct: 705 QHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKP 764

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHY+C+VDLL R+G L +A + + EM  +        +W  LLSAC+     ++G+ AA 
Sbjct: 765 EHYACVVDLLGRSGLLSRAKRFVEEMPIQ----PDAMVWRTLLSACNVHKNIDIGEFAAS 820

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             LEL+P +   YV++SN+YA    WD   + R++MK++G+KK+ G SW+EV
Sbjct: 821 HLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEV 872



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 163/344 (47%), Gaps = 32/344 (9%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           + + F+ M + GI  + +   S L   T++     G+Q+   V K+G+  +V+V S LID
Sbjct: 422 SFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLID 481

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +YAK   +  A  +F  +   + V   A+++GY +   +   L L + M   G+  D+  
Sbjct: 482 MYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIG 541

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCN-LGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
            ++ + ACAG+ A + GRQ+HA   + C +   +D+ + ++L+ +Y +CG V +A   F+
Sbjct: 542 FASAISACAGIQALDQGRQIHA---QSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFD 598

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                      KD V W S++  + ++GYF+E + ++  M   G + +   F + +SA +
Sbjct: 599 QI-------YAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAA 651

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
           +   V++G +    M+     +   E  + L+ L  + G +D                  
Sbjct: 652 NIANVRIGKQ-IHGMIRKTGYDSETEVSNALITLYAKCGTIDDI---------------- 694

Query: 369 VSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
              W ++++  + H CG   L      K L++ P++V    +LS
Sbjct: 695 --SWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLS 736



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 158/356 (44%), Gaps = 38/356 (10%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           NL +       ++ R+ + +N +IS   + G    AL  F  M++     D   + S L+
Sbjct: 301 NLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLS 360

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A  SV     GKQ  ++  K+G  S + V  +L+DLY K   I  A   F        +C
Sbjct: 361 ACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF--------LC 412

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
                  Y +        ++   M   G+  + FT  ++L+ C  L A + G Q+H  ++
Sbjct: 413 -------YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVL 465

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           +       +V++ S LI+MY K G +  AL++F     RL+     DVV WT+M+  Y +
Sbjct: 466 KTGFQF--NVYVSSVLIDMYAKHGKLDHALKIF----RRLK---ENDVVSWTAMIAGYTQ 516

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +  F E + L++ M   G K D + F + ISAC+    +  G +     +H      G  
Sbjct: 517 HDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ-----IHAQSCLSGYS 571

Query: 335 HY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
                 + LV L  R G++ +A+   +++  + + S     W +L+S     G FE
Sbjct: 572 DDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVS-----WNSLVSGFAQSGYFE 622



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 137/297 (46%), Gaps = 38/297 (12%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L+A T V+   FGKQ+   V K G+ S  +V +AL+ LY++   +  AE +F  +  ++ 
Sbjct: 258 LSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDR 317

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  N+L+SG  +       L L + M       D  T+++LL ACA + A   G+Q H+Y
Sbjct: 318 VSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSY 377

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            I+    + +D+ ++ SL+++Y KC  +  A + F                        Y
Sbjct: 378 AIK--AGMTSDIVVEGSLLDLYVKCSDIKTAHEFF----------------------LCY 413

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           G+     +  +++  M + G  P++  + +++  C+  G   LG +     +H   L+ G
Sbjct: 414 GQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQ-----IHTQVLKTG 468

Query: 333 PEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
            +      S L+D+  + G+LD A K+   + +     + V  W A+++      KF
Sbjct: 469 FQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKE-----NDVVSWTAMIAGYTQHDKF 520



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 163/353 (46%), Gaps = 50/353 (14%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           RF +Q+ A    SG+ SS F+ + LIDLY K   +  A+ +F+ +  ++SV   A++SG 
Sbjct: 181 RFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISG- 239

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
               L   G E   ++              +L AC  +   EFG+Q+H  ++++     +
Sbjct: 240 ----LSQNGYEEEAML---------LFCQIVLSACTKVEFFEFGKQLHGLVLKQ--GFSS 284

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           + ++ ++L+ +Y + G ++ A Q+F+    R       D V + S++    + GY    +
Sbjct: 285 ETYVCNALVTLYSRSGNLSSAEQIFHCMSQR-------DRVSYNSLISGLAQQGYINRAL 337

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSC 338
            L++ M ++  KPD V   +++SAC+  G +  G ++     H Y ++ G          
Sbjct: 338 ALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQF-----HSYAIKAGMTSDIVVEGS 392

Query: 339 LVDLLCRA-------------GELD---KAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           L+DL  +              G+LD   K++++  +M   G   +  + + ++L  C   
Sbjct: 393 LLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFT-YPSILKTCTTL 451

Query: 383 GKFELGKLAAQKALELD-PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           G  +LG+    + L+     NV +  +L ++YAK    D   ++   +KE  +
Sbjct: 452 GATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDV 504



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 135/301 (44%), Gaps = 46/301 (15%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           S + G  LID Y     ++ A  +FDE+P+++  C N + + +   +L      L R M 
Sbjct: 96  SFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRML 155

Query: 180 ALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              +++D    + +LR C+G + +  F  Q+HA  I       +  F+ + LI++Y K G
Sbjct: 156 TKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITS--GFESSTFICNPLIDLYFKNG 213

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            ++ A +VF       E    +D V W +M+    +NGY +E + L+  +          
Sbjct: 214 FLSSAKKVF-------ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI---------- 256

Query: 299 AFVTVISACSHTGQVKLGIEYFEW--MVHDYKLEPG--PEHYSC--LVDLLCRAGELDKA 352
               V+SAC+        +E+FE+   +H   L+ G   E Y C  LV L  R+G L  A
Sbjct: 257 ----VLSACTK-------VEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSA 305

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD---PHNVGIYVML 409
            ++ + M  R   S     + +L+S     G      LA  K + LD   P  V +  +L
Sbjct: 306 EQIFHCMSQRDRVS-----YNSLISGLAQQGYINRA-LALFKKMNLDCQKPDCVTVASLL 359

Query: 410 S 410
           S
Sbjct: 360 S 360


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 220/398 (55%), Gaps = 14/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS + +N  P  AL  +  M   G   D   + + ++A   +KD   G ++
Sbjct: 143 RNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKL 202

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +H+ +        +GSAL+++YAK   +  A  +FD++  K+    +AL+ GY +    
Sbjct: 203 HSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRS 262

Query: 169 AGGLELVR-LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              L+L R +     +  +  T+ A++ ACA L   E GR VH Y+ R     G+ V + 
Sbjct: 263 TEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITR--TQKGHSVSLN 320

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +SLI+M+ KCG +  A ++F+   +       KD++ W SM+  +  +G  +E +  +  
Sbjct: 321 NSLIDMFSKCGDIDAAKRIFDSMSY-------KDLISWNSMVNGFALHGLGREALAQFRL 373

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M     +PDE+ F+ V++ACSH G V+ G + F  +   Y +    EHY C+VDLLCRAG
Sbjct: 374 MQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAG 433

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L +A + I  M  +  G+    +WG++L AC      ELG+ AA+  L+L+P N G+Y+
Sbjct: 434 LLAEAREFIRVMPLQPDGA----IWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYI 489

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YAK  MW+E+ ++RELM EKG++K  GCS + +
Sbjct: 490 LLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVI 527



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 170/364 (46%), Gaps = 35/364 (9%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCSSLTASTSVKDARFGKQVQA 110
           L +N ++  F  +  P  AL++++ M      + D +   S L     + + + GK +  
Sbjct: 44  LTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHG 103

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            V K    S +++ + L+++YA    +  A  +F+ +  +N V   +++SGY +      
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM----IRKCCNLGNDVFM 226
            L L + M   G   D  T++ L+ ACA L     G ++H+++    ++ C  LG     
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLG----- 218

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY- 285
            S+L+ MY KCG +  A QVF+          +KDV  W++++  Y +N    E ++L+ 
Sbjct: 219 -SALVNMYAKCGDLKTARQVFDKLS-------DKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
           E    +  +P+EV  + VISAC+  G ++ G     W VHDY       H     + L+D
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETG----RW-VHDYITRTQKGHSVSLNNSLID 325

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELD 399
           +  + G++D A ++ + M         +  W ++++  A H  G+  L +    +  +L 
Sbjct: 326 MFSKCGDIDAAKRIFDSM-----SYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQ 380

Query: 400 PHNV 403
           P  +
Sbjct: 381 PDEI 384


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 151/451 (33%), Positives = 239/451 (52%), Gaps = 26/451 (5%)

Query: 1    NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNC---LKFLNPRNPLPFNVV 57
            +VHA  F+  +     I  +S L+  Y+ C      G  T+     K +  ++ + +  +
Sbjct: 893  SVHAELFKRPIQSTPAI--ESALLTLYSKC------GCDTDAYLVFKSMEEKDMVAWGSL 944

Query: 58   ISDFCRNGSPLYALKTFSFMHVHGIFL--DTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
            IS  C+NG    ALK F  M      L  D+  + S + A   ++   FG QV   + K+
Sbjct: 945  ISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKT 1004

Query: 116  GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
            G + +VFVGS+LIDLY+K  L   A  +F  +  +N V  N+++S Y    L    +EL 
Sbjct: 1005 GQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELF 1064

Query: 176  RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
             LM + G+  D  +++++L A +  ++   G+ +H Y +R    + +D  ++++LI+MY 
Sbjct: 1065 NLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR--LGIPSDTHLKNALIDMYV 1122

Query: 236  KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
            KCG    A  +F    H       K ++ W  M+  YG +G  +  + L++ +   G  P
Sbjct: 1123 KCGFSKYAENIFKKMQH-------KSLITWNLMIYGYGSHGDCRTALSLFDELKKAGETP 1175

Query: 296  DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
            D+V F+++ISAC+H+G V+ G  +FE M  DY +EP  EHY+ +VDLL RAG L++A+  
Sbjct: 1176 DDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVDLLGRAGRLEEAYSF 1235

Query: 356  INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
            I  M          S+W  LLSA       ELG L+A+K L ++P     YV L NLY +
Sbjct: 1236 IKAMPTEADS----SIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYME 1291

Query: 416  FCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
              + +E  +L   MKE+GL+K  GCSWIEV+
Sbjct: 1292 AGLKNEAAKLLGEMKERGLQKQPGCSWIEVS 1322



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 147/318 (46%), Gaps = 22/318 (6%)

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARF----GKQVQAHVTKSGWLSSVFVGSALID 129
           F  M V G+  D ++L  S+  S   K+  F    GKQ+  ++ ++      F+ +ALID
Sbjct: 655 FRRMLVLGVRPDAFSL--SIVVSVLCKEGNFRREDGKQIHGYMLRNSLDGDSFLKTALID 712

Query: 130 LYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
           +Y K  L  DA  +F EI  K N V  N ++ G+  +++    LEL  L  +  +     
Sbjct: 713 MYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKLVST 772

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           + +  L AC+    + FGRQ+H  +++    L ND ++ +SL+ MY KCG+V +A  VF+
Sbjct: 773 SFTGALGACSQSENSAFGRQIHCDVVK--MGLDNDPYVSTSLLSMYSKCGMVGEAETVFS 830

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                    ++K + +W +M+  Y  N      ++L+  M      PD      VIS CS
Sbjct: 831 CV-------VDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCS 883

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
             G    G +     +    ++  P   S L+ L  + G    A+ +   M ++      
Sbjct: 884 MFGLYDYG-KSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEK-----D 937

Query: 369 VSMWGALLSACHDCGKFE 386
           +  WG+L+S     GKF+
Sbjct: 938 MVAWGSLISGLCKNGKFK 955



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 161/339 (47%), Gaps = 35/339 (10%)

Query: 50   NPLPFNVVI-----SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
            N + +NV+I     S+ C +   LY L        + + L + +   +L A +  +++ F
Sbjct: 735  NVVLWNVMIVGFGGSEICESSLELYMLA-----KSNSVKLVSTSFTGALGACSQSENSAF 789

Query: 105  GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            G+Q+   V K G  +  +V ++L+ +Y+K  ++ +AE +F  +  K     NA+++ Y E
Sbjct: 790  GRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVE 849

Query: 165  AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                   LEL   M    +  D FTLS ++  C+     ++G+ VHA + ++   + +  
Sbjct: 850  NDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKR--PIQSTP 907

Query: 225  FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
             ++S+L+ +Y KCG  T A  VF       +    KD+V W S++    +NG FKE +K+
Sbjct: 908  AIESALLTLYSKCGCDTDAYLVF-------KSMEEKDMVAWGSLISGLCKNGKFKEALKV 960

Query: 285  YEAMLMNGT--KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
            +  M  +    KPD     +VI+AC+    +  G++     VH   ++ G        S 
Sbjct: 961  FGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQ-----VHGSMIKTGQVLNVFVGSS 1015

Query: 339  LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            L+DL  + G  + A K+   M        ++  W +++S
Sbjct: 1016 LIDLYSKCGLPEMALKVFTSM-----RPENIVAWNSMIS 1049



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 156/337 (46%), Gaps = 22/337 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMH-VHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +P   N  I    + G  L AL  ++       ++   +   S L A +S+ +   GK +
Sbjct: 524 SPASVNSGIRALIQKGEYLQALHLYTKHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKTI 583

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD-----EIPVKNSVCANALLSGYC 163
              +   GW    F+ ++L+++Y K   +  A  +FD      +  ++    N+++ GY 
Sbjct: 584 HGSIIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYF 643

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC--AGLSAAEFGRQVHAYMIRKCCNLG 221
           + + +  G+   R M  LG+  D F+LS ++      G    E G+Q+H YM+R   +L 
Sbjct: 644 KFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRN--SLD 701

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            D F++++LI+MY K GL T A +VF      +E E   +VVLW  M+  +G +   +  
Sbjct: 702 GDSFLKTALIDMYFKFGLSTDAWRVF------VEIEDKSNVVLWNVMIVGFGGSEICESS 755

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           ++LY     N  K    +F   + ACS +     G +     V    L+  P   + L+ 
Sbjct: 756 LELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQ-IHCDVVKMGLDNDPYVSTSLLS 814

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +  + G + +A  + + ++D+      + +W A+++A
Sbjct: 815 MYSKCGMVGEAETVFSCVVDK-----RLEIWNAMVAA 846


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 219/397 (55%), Gaps = 18/397 (4%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +  +IS F +N     A+  FS M   G+  + +     LTA   +  +    +V 
Sbjct: 361 NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPS----EVH 416

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           A V K+ +  S  VG+AL+D Y KL  + +A  +F  I  K+ V  +A+L+GY +     
Sbjct: 417 AQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETE 476

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQS 228
             +++   +   G+  + FT S++L  CA  +A+   G+Q H + I+    L + + + S
Sbjct: 477 AAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK--SRLDSSLCVSS 534

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+ MY K G +  A +VF       + +  KD+V W SM+  Y ++G   + + +++ M
Sbjct: 535 ALLTMYAKKGNIESAEEVF-------KRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM 587

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                K D V F+ V +AC+H G V+ G +YF+ MV D K+ P  EH SC+VDL  RAG+
Sbjct: 588 KKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQ 647

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L+KA K+I  M +     +  ++W  +L+AC    K ELG+LAA+K + + P +   YV+
Sbjct: 648 LEKAMKVIENMPN----PAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVL 703

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA+   W E  ++R+LM E+ +KK+ G SWIEV
Sbjct: 704 LSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEV 740



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 123/255 (48%), Gaps = 9/255 (3%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F R+G    A + F  +H  G+ +D     S L  S ++ D  FG+Q+     K G+L  
Sbjct: 68  FSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDD 127

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           V VG++L+D Y K     D   +FDE+  +N V    L+SGY    +    L L   M  
Sbjct: 128 VSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQN 187

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G   + FT +A L   A       G QVH  +++    L   + + +SLI +Y KCG V
Sbjct: 188 EGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN--GLDKTIPVSNSLINLYLKCGNV 245

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            KA  +F+      + E+ K VV W SM+  Y  NG   E + ++ +M +N  +  E +F
Sbjct: 246 RKARILFD------KTEV-KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSF 298

Query: 301 VTVISACSHTGQVKL 315
            +VI  C++  +++ 
Sbjct: 299 ASVIKLCANLKELRF 313



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 167/351 (47%), Gaps = 26/351 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +  NG  L AL  F  M ++ + L   +  S +    ++K+ RF +Q+
Sbjct: 258 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQL 317

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVCANALLSGYCEAKL 167
              V K G+L    + +AL+  Y+K   + DA  +F EI  V N V   A++SG+ +   
Sbjct: 318 HCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDG 377

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               ++L   M   G+  + FT S +L A   +S +E    VHA +++   N      + 
Sbjct: 378 KEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VHAQVVK--TNYERSSTVG 431

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L++ Y K G V +A +VF+       G  +KD+V W++ML  Y + G  +  IK++  
Sbjct: 432 TALLDAYVKLGKVEEAAKVFS-------GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGE 484

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           +   G KP+E  F ++++ C+ T       + F       +L+      S L+ +  + G
Sbjct: 485 LTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKG 544

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
            ++ A     E+  R      VS W +++S     G+       A KAL++
Sbjct: 545 NIESA----EEVFKRQREKDLVS-WNSMISGYAQHGQ-------AMKALDV 583



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 19/243 (7%)

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +++A  +FD+ P ++     +LL G+           L   +  LG++ D    S++L+ 
Sbjct: 43  LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            A L    FGRQ+H     +C   G  +DV + +SL++ Y K        +VF+    R 
Sbjct: 103 SATLCDELFGRQLHC----QCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER- 157

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                 +VV WT+++  Y RN    EV+ L+  M   GT+P+   F   +   +  G   
Sbjct: 158 ------NVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGG 211

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G++    +V +   +  P   S L++L  + G + KA  L ++   +     SV  W +
Sbjct: 212 RGLQVHTVVVKNGLDKTIPVSNS-LINLYLKCGNVRKARILFDKTEVK-----SVVTWNS 265

Query: 375 LLS 377
           ++S
Sbjct: 266 MIS 268


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 142/416 (34%), Positives = 214/416 (51%), Gaps = 44/416 (10%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +  N   L AL+ F+ M   G+  D     S L+A +++     G QV AHV 
Sbjct: 273 WNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVY 332

Query: 114 KSGWLSSVFVGSALIDLYAK-------------------LLL------------IHDAEL 142
           K G+ + + + SAL+D+Y+K                   +LL            I DA  
Sbjct: 333 KVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQ 392

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD +P K+ +  N+++ G+ +       L+L   M  LGL  D F+L+ ++ ACA +S+
Sbjct: 393 IFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISS 452

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            E G Q+ A        L  D  + +SL++ Y KCGLV    ++F+         +  D 
Sbjct: 453 LELGEQIFARAT--IIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRM-------MKSDE 503

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V W SML  Y  NG+  E + +++ M   G +P ++ FV V+SAC H G V+ G ++F  
Sbjct: 504 VPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYA 563

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M  DY + PG EHYSC+VDL  RAG L+ A  LI +M  +    +  SMW ++L  C   
Sbjct: 564 MKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLK----ADTSMWSSVLRGCVAH 619

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           G   LGK  A++ ++LDP N G YV LS +YA F  W    Q+R+LM +K + KD 
Sbjct: 620 GNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKDT 675



 Score =  207 bits (527), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/394 (31%), Positives = 212/394 (53%), Gaps = 13/394 (3%)

Query: 52   LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
            + +N +I    ++G    AL+ F  M   G   D + + + +T  ++++D   G+Q+ A 
Sbjct: 907  ISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFAL 966

Query: 112  VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
              + G+LS+  V SA IDL++K   + D+  +F+EI   +SV  NA++S Y         
Sbjct: 967  CIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENA 1026

Query: 172  LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
            L+L  L     L    FTLS +L A + L   + G Q+H+ +++    L +DV + SSL+
Sbjct: 1027 LQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKS--GLESDVIVASSLV 1084

Query: 232  EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
            EMY K GL+  A++ F   G R       D++ W +M+     NG   + +++++ +L+ 
Sbjct: 1085 EMYAKFGLIDSAMKTFAKIGAR-------DLISWNTMIMGLAYNGRVSKALEIFKELLIG 1137

Query: 292  GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
            G  PDE+    V+ AC+  G V  G+  F  M  +Y + P  EHY+C+VD++ R G+L +
Sbjct: 1138 GPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKE 1197

Query: 352  AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
            A  ++  M    H  S + +WG+LL AC   G     +  A++ +EL+P +   Y++L+ 
Sbjct: 1198 AMDIVELM---PHEPSGL-IWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQ 1253

Query: 412  LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             Y     W+ + ++   MKEKG++K +GCSWI +
Sbjct: 1254 AYEMRGRWESLVRVXRAMKEKGVRKVIGCSWIGI 1287



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 132/294 (44%), Gaps = 39/294 (13%)

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC---EAKLWAGGLELVRLM 178
           F  + +I  +AK   +  A  +F+E+P KN +  N+++ GY      K   G  + + L 
Sbjct: 105 FSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLN 164

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
           P      D F L+ ++ AC  L A + G+Q+HA ++        D  + SSL+ +YGKCG
Sbjct: 165 PLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEF--DSVLGSSLVNLYGKCG 222

Query: 239 LVTKALQVFNL-------------AGHRLEGEINKD-----------VVLWTSMLGVYGR 274
            +  A  V NL             +G+   G +N             VVLW SM+  Y  
Sbjct: 223 DIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVA 282

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           N    E ++L+  M   G + D   F +V+SACS  G +  GI+      H YK+    +
Sbjct: 283 NNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVH---AHVYKVGFTND 339

Query: 335 HY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
               S LVD+  +    D A KL +++      +    +  ++++   +CG+ +
Sbjct: 340 IIIDSALVDMYSKCRRPDDACKLFSDL-----QAYDTILLNSMITVYSNCGRID 388



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 142/304 (46%), Gaps = 20/304 (6%)

Query: 137  IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
            +  A  +FDE+P ++ V  N ++SGY    L+         M   G+    FT S LL  
Sbjct: 792  LERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLL-- 849

Query: 197  CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
             + +S+A  G+Q+HA MIR   +L N V + +SLI MYGK G+V  A  VF +    L  
Sbjct: 850  -SFVSSACRGKQIHASMIRNGVDLSN-VVVGNSLIGMYGKFGVVDYAFGVF-ITMEEL-- 904

Query: 257  EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
                D++ W S++   G++GY    ++ +  M   G  PD+    TVI+ CS+   ++ G
Sbjct: 905  ----DIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKG 960

Query: 317  IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             + F   +    L       S  +DL  +   L+ + ++  E+    +   SV +  A++
Sbjct: 961  EQIFALCIRVGFLSNSIVS-SASIDLFSKCNRLEDSVRVFEEI----YQWDSV-LCNAMI 1014

Query: 377  S--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
            S  A H  G+  L          L P    + ++LS +     + D+  Q+  L+ + GL
Sbjct: 1015 SSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPV-DQGSQIHSLVVKSGL 1073

Query: 435  KKDV 438
            + DV
Sbjct: 1074 ESDV 1077



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 147/312 (47%), Gaps = 24/312 (7%)

Query: 49   RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
            R+ + +N +IS +   G    A + FS M   GI    +   + L+  +S   A  GKQ+
Sbjct: 805  RDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSS---ACRGKQI 861

Query: 109  QAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
             A + ++G  LS+V VG++LI +Y K  ++  A  +F  +   + +  N+L+    ++  
Sbjct: 862  HASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGY 921

Query: 168  WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                L    LM ++G   D FT+S ++  C+ L   E G Q+ A  IR      ++  + 
Sbjct: 922  QNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIR--VGFLSNSIVS 979

Query: 228  SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYE 286
            S+ I+++ KC  +  +++VF         EI + D VL  +M+  Y  +G+ +  ++L+ 
Sbjct: 980  SASIDLFSKCNRLEDSVRVFE--------EIYQWDSVLCNAMISSYAWHGFGENALQLFV 1031

Query: 287  AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDL 342
              L    +P E     V+SA S    V  G +     +H   ++ G E      S LV++
Sbjct: 1032 LTLRENLRPTEFTLSIVLSAVSILLPVDQGSQ-----IHSLVVKSGLESDVIVASSLVEM 1086

Query: 343  LCRAGELDKAWK 354
              + G +D A K
Sbjct: 1087 YAKFGLIDSAMK 1098



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 133/314 (42%), Gaps = 40/314 (12%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKN-------------------LGTLTN 41
            VHAH ++ G      II  S L+  Y+ CR   +                   +   +N
Sbjct: 326 QVHAHVYKVGF--TNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSN 383

Query: 42  CLKFLNPR---NPLP------FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           C +  + R   + +P      +N +I  F +N  P+ AL  F  M+  G+ +D ++L   
Sbjct: 384 CGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGV 443

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           ++A  S+     G+Q+ A  T  G      + ++L+D Y K  L+     +FD +   + 
Sbjct: 444 ISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDE 503

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  N++L GY         L +   M ++G+     T   +L AC      E GR+   Y
Sbjct: 504 VPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWF-Y 562

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG-- 270
            ++   ++   +   S ++++Y + GL+  A+ +        +  +  D  +W+S+L   
Sbjct: 563 AMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIE------QMPLKADTSMWSSVLRGC 616

Query: 271 -VYGRNGYFKEVIK 283
             +G N   K+V K
Sbjct: 617 VAHGNNILGKKVAK 630


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  227 bits (579), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 143/450 (31%), Positives = 232/450 (51%), Gaps = 33/450 (7%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H H F+        I   + L+  Y  C    ++ +       +  RN + +N +I  F
Sbjct: 271 IHKHGFDAN------IFVGTALVDMYAKC---ADMHSAVRVFDQMPERNLVSWNSMIVGF 321

Query: 62  CRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
             N     A+  F   +    +  +  ++ S L+A  ++    FG+QV   V K G +  
Sbjct: 322 FHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPL 381

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            +V ++L+D+Y K     +   +F  +  ++ V  N L+ G+ +   +        +M  
Sbjct: 382 TYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRR 441

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR-----KCCNLGNDVFMQSSLIEMYG 235
            G+  D  + S +L + A L+A   G  +H  +I+       C LG       SLI MY 
Sbjct: 442 EGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILG-------SLITMYA 494

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG +  A QVF       EG  + +V+ WT+M+  Y  +G   +VI+L+E ML  G +P
Sbjct: 495 KCGSLVDAYQVF-------EGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEP 547

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
             V FV V+SACSHTG+V+ G+ +F  M   + + PGPEHY+C+VDLL RAG LD+A + 
Sbjct: 548 SHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRF 607

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
           I  M  +     + S+WGALL AC   G  ++G+ AA++  E++P+N G YV+L+N+  +
Sbjct: 608 IESMPMK----PTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTR 663

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
               +E  ++R LM   G++K+ GCSWI+V
Sbjct: 664 SGRLEEANEVRRLMGVNGVRKEPGCSWIDV 693



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 171/350 (48%), Gaps = 26/350 (7%)

Query: 68  LYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSAL 127
           L AL  F+ M   G + + +   S L+AS +      G+Q+ + + K G+ +++FVG+AL
Sbjct: 227 LQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTAL 286

Query: 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-LMPALGLDYD 186
           +D+YAK   +H A  +FD++P +N V  N+++ G+    L+   + + + ++    +  +
Sbjct: 287 VDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPN 346

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
             ++S++L ACA +    FGRQVH  +++    L    ++ +SL++MY KC    + +++
Sbjct: 347 EVSVSSVLSACANMGGLNFGRQVHGVVVKY--GLVPLTYVMNSLMDMYFKCRFFDEGVKL 404

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           F   G R       DVV W  ++  + +N  F+E    +  M   G  PDE +F TV+ +
Sbjct: 405 FQCVGDR-------DVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHS 457

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDR 362
            +    +  G       +HD  ++ G     C    L+ +  + G L  A+++   + D 
Sbjct: 458 SASLAALHQGTA-----IHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDH 512

Query: 363 GHGSSSVSMWGALLSA--CHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
                +V  W A++SA   H C    +       +  ++P +V    +LS
Sbjct: 513 -----NVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLS 557



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 134/297 (45%), Gaps = 18/297 (6%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD--EIPVK 150
           L  +   +  +   Q+   +  + + S  F+ + LI+LYAK   ++ A L+F       K
Sbjct: 149 LNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFK 208

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
             V   +L++      +    L L   M   G   + FT S++L A A       G+Q+H
Sbjct: 209 TIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLH 268

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           + + +       ++F+ ++L++MY KC  +  A++VF+    R       ++V W SM+ 
Sbjct: 269 SLIHKH--GFDANIFVGTALVDMYAKCADMHSAVRVFDQMPER-------NLVSWNSMIV 319

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTK-PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
            +  N  +   + +++ +L   T  P+EV+  +V+SAC++ G +  G +    +V  Y L
Sbjct: 320 GFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQ-VHGVVVKYGL 378

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            P     + L+D+  +    D+  KL   + DR      V  W  L+       KFE
Sbjct: 379 VPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDR-----DVVTWNVLVMGFVQNDKFE 430



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L+ LL       + +   Q+H  +I    N  +  F+ ++LI +Y KCG + +AL +F++
Sbjct: 145 LNHLLNTAIQTRSLKHATQIHTQIIIN--NYTSLPFLFNNLINLYAKCGCLNQALLLFSI 202

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
             H       K +V WTS++          + + L+  M  +G  P++  F +++SA + 
Sbjct: 203 THHHF-----KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAA 257

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           T  V  G +    ++H +  +      + LVD+  +  ++  A ++ ++M +R
Sbjct: 258 TMMVLHG-QQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPER 309


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 139/407 (34%), Positives = 227/407 (55%), Gaps = 26/407 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I+ + +NG    AL+ F  M   G+  D   L S ++A  S+   + G Q+
Sbjct: 211 RNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQI 270

Query: 109 QAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
            A V K+  +   + +G+AL+D+YAK   +++A  +FD + ++N V   +++SGY  A  
Sbjct: 271 HARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARA-- 328

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC-----NLGN 222
               ++  R M +     +  + +AL+         E   ++   + R+         GN
Sbjct: 329 --ASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGN 386

Query: 223 ----DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
               D+F+ +SLI+MY KCG +    +VF       E    +D V W +++  Y +NGY 
Sbjct: 387 LLKSDIFVGNSLIDMYMKCGSIEDGSRVF-------EKMKERDCVSWNAIIVGYAQNGYG 439

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
            E ++++  ML+ G KPD V  + V+ ACSH G V+ G  YF + + ++ L P  +HY+C
Sbjct: 440 AEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYF-FSMEEHGLIPLKDHYTC 498

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +VDLL RAG L++A  LI  M      +    +WG+LL+AC   G  E+GK AA+K LE+
Sbjct: 499 MVDLLGRAGCLNEAKNLIEAM----PVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEI 554

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           DP N G YV+LSN+YA+   W ++ ++R+LM+++G+ K  GCSWIEV
Sbjct: 555 DPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEV 601



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 160/356 (44%), Gaps = 45/356 (12%)

Query: 77  MHVHGIFLDTYALCSS-----LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY 131
           M  HG+  D Y   SS     L +    + AR  + V A +  + +   +F+ + LID+Y
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVY 60

Query: 132 AKLLLIHDAELMFDEIPVKNSVCANALLS------------------------------- 160
            K   + DA  +FD +P +N+   N+L+S                               
Sbjct: 61  GKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVS 120

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           G+ +   +   LE    M       + ++  + L ACAGL     G QVHA + +     
Sbjct: 121 GFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKS--RY 178

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             DV+M S+LI+MY KCG V  A +VF+       G I +++V W S++  Y +NG   E
Sbjct: 179 STDVYMGSALIDMYSKCGSVACAEEVFS-------GMIERNLVTWNSLITCYEQNGPASE 231

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            ++++  M+ +G +PDEV   +V+SAC+    +K G++    +V   K        + LV
Sbjct: 232 ALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALV 291

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
           D+  +  ++++A ++ + M  R   S +  + G   +A     +F   K+  +  +
Sbjct: 292 DMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVV 347



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 166/323 (51%), Gaps = 30/323 (9%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++S F ++     +L+ F  MH     L+ Y+  S+L+A   + D   G QV A V+
Sbjct: 115 WNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVS 174

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           KS + + V++GSALID+Y+K   +  AE +F  +  +N V  N+L++ Y +    +  LE
Sbjct: 175 KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALE 234

Query: 174 L-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           + VR+M + GL+ D  TL++++ ACA L A + G Q+HA ++ K     +D+ + ++L++
Sbjct: 235 VFVRMMDS-GLEPDEVTLASVVSACASLCALKEGLQIHARVV-KTNKFRDDLVLGNALVD 292

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY KC  V +A +VF+    R       +VV  TSM+  Y R    K    ++  M    
Sbjct: 293 MYAKCSKVNEARRVFDRMSIR-------NVVSETSMVSGYARAASVKAARFMFSKM---- 341

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS-------------CL 339
           T+ + V++  +I+  +  G+ +  +  F  +  +      P HY+              L
Sbjct: 342 TQRNVVSWNALIAGYTQNGENEEALRLFRLLKRE---SIWPTHYTFGNLLKSDIFVGNSL 398

Query: 340 VDLLCRAGELDKAWKLINEMLDR 362
           +D+  + G ++   ++  +M +R
Sbjct: 399 IDMYMKCGSIEDGSRVFEKMKER 421


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 138/398 (34%), Positives = 213/398 (53%), Gaps = 18/398 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS   +NG    A+  FS M    +  + +   + L AS S+       Q+
Sbjct: 367 RNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQI 422

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V K+ +     VG+AL+  Y+K     DA  +F  I  K+ V  +A+LS + +A   
Sbjct: 423 HAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDC 482

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQ 227
            G   L   M   G+  + FT+S+++ ACA  SA  + GRQ HA  I+      + + + 
Sbjct: 483 EGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKY--RYHDAICVS 540

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+L+ MY + G +  A  VF       E + ++D+V W SM+  Y ++GY  + I+ +  
Sbjct: 541 SALVSMYSRKGNIDSAQIVF-------ERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQ 593

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M  +G + D V F+ VI  C+H G V  G +YF+ MV D+K+ P  EHY+C+VDL  RAG
Sbjct: 594 MEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAG 653

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           +LD+   LI +M       +   +W  LL AC      ELGK +A K L L+PH+   YV
Sbjct: 654 KLDETMSLIRDM----PFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYV 709

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YA    W E  ++R+LM  + +KK+ GCSWI++
Sbjct: 710 LLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQI 747



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 155/336 (46%), Gaps = 17/336 (5%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N V+ D+ R G     L  FS     G+ +D+  L   L A  SV D   G+Q+     K
Sbjct: 68  NRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVK 127

Query: 115 SGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            G     V  G++L+D+Y K   + +   +F+ +P KN V   +LL+G   A++ +  + 
Sbjct: 128 CGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMA 187

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M A G+  + FT +++L A A   A + G++VHA  ++  C   + VF+ +SL+ M
Sbjct: 188 LFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCR--SSVFVCNSLMNM 245

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCGLV  A  VFN    R       D+V W +++     N    E ++L+        
Sbjct: 246 YAKCGLVEDAKSVFNWMETR-------DMVSWNTLMAGLQLNECELEALQLFHESRATMG 298

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPEHYSCLVDLLCRAGELDKA 352
           K  +  + TVI  C++  Q+ L  +    ++ H + L       + L D   + GEL  A
Sbjct: 299 KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNV--MTALADAYSKCGELADA 356

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
             + +       GS +V  W A++S C   G   L 
Sbjct: 357 LNIFSMTT----GSRNVVSWTAIISGCIQNGDIPLA 388



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M   GI+ + +   S L+A  S      G++V A   K G  SSVFV ++L+++YAK
Sbjct: 189 FFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAK 248

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
             L+ DA+ +F+ +  ++ V  N L++G    +     L+L     A        T + +
Sbjct: 249 CGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATV 308

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           ++ CA L      RQ+H+ +++   +L  +V   ++L + Y KCG +  AL +F++    
Sbjct: 309 IKLCANLKQLALARQLHSCVLKHGFHLTGNVM--TALADAYSKCGELADALNIFSMTTG- 365

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
                +++VV WT+++    +NG     + L+  M  +   P+E  +  ++ A
Sbjct: 366 -----SRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 145/446 (32%), Positives = 227/446 (50%), Gaps = 48/446 (10%)

Query: 36  LGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           LG L    + L+    RN + +  +++   + G+   A+  +S M   G   +     S 
Sbjct: 325 LGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSV 384

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L A  S++D R G+++     K    ++VFV SALID+Y K   + DA+++F  +P KN 
Sbjct: 385 LGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNI 444

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPAL------------------------------- 181
           VC N+L+SGY          EL + MPA                                
Sbjct: 445 VCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLAS 504

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G      T S++L ACA L + E G+ VHA +I+    +   +F+ ++L +MY K G + 
Sbjct: 505 GQSPGEITFSSVLLACASLCSLEMGKMVHAKIIK--LGIKESIFVGTALSDMYAKSGDLD 562

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            + +VF     R       + V WT+M+     NG+ +E I L+E M+  G  P+E  F+
Sbjct: 563 SSKRVFYEMPKR-------NDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFL 615

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            ++ ACSH+G V+  + YFE M+    + P  +HY+C+VD+L RAG L +A  L+ ++  
Sbjct: 616 AILFACSHSGLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIES 674

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +   +S    W ALLSAC+     E+G+ AA++  ELD  N   YV+LSN+YA    W +
Sbjct: 675 KSEANS----WAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKD 730

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
             ++R LMK   LKKD GCSW+++ G
Sbjct: 731 AAEMRILMKGINLKKDGGCSWVQIRG 756



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 132/302 (43%), Gaps = 55/302 (18%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           SV   + ++D   K   + DA  ++ + P+ +     A+++G+   +L    L +   M 
Sbjct: 178 SVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEML 237

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL-GNDVFMQSSLIEMYGKCG 238
           + G+  +  TL ++++AC G  A EF   +    +    NL   ++ +++SLI +Y + G
Sbjct: 238 SCGVSPNEITLVSVIKACIG--AGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKG 295

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG-----------------RN------ 275
               A ++F+      E E+ +DVV WT++L VY                  RN      
Sbjct: 296 DADAARRMFD------EMEV-RDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGT 348

Query: 276 --------GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
                   G  KE + LY  ML +G +P+   F +V+ AC+    ++ G +     +H+ 
Sbjct: 349 LVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK-----IHNQ 403

Query: 328 KLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
            L+    +     S L+D+ C+  +L  A     +M+       ++  W +L+S   +  
Sbjct: 404 TLKMACSNNVFVSSALIDMYCKCKQLPDA-----QMIFYSLPQKNIVCWNSLISGYSNNS 458

Query: 384 KF 385
           K 
Sbjct: 459 KM 460


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 220/403 (54%), Gaps = 13/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
             +++ R+ + +N +IS     G    A   F  +   G+ ++   L + L ++ S++ A
Sbjct: 361 FDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAA 420

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
              +QV A   K G++    V + LID Y K   + DA  +F+E    + +   ++++  
Sbjct: 421 SATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITAL 480

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +     G ++L   M   GL+ D F LS+LL ACA LSA E G+QVHA++I++     +
Sbjct: 481 SQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR--QFMS 538

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D F  ++L+  Y KCG +  A   F+    R        VV W++M+G   ++G+ K  +
Sbjct: 539 DAFAGNALVYTYAKCGSIEDAELAFSSLPER-------GVVSWSAMIGGLAQHGHGKRAL 591

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L+  M+  G  P+ +   +V+ AC+H G V     YF  M   + ++   EHYSC++DL
Sbjct: 592 ELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDL 651

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG+LD A +L+N M  +    ++ S+WGALL A       ELGKLAA+K   L+P  
Sbjct: 652 LGRAGKLDDAMELVNSMPFQ----ANASVWGALLGASRVHKDPELGKLAAEKLFILEPEK 707

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G +V+L+N YA   MW+E+ ++R+LMK+  +KK+   SW+EV
Sbjct: 708 SGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEV 750



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 180/393 (45%), Gaps = 38/393 (9%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNV---- 56
           ++HA+  ++G L       ++ L+  Y+ CR          C + +    P P +V    
Sbjct: 25  HLHANLLKSGFL----ASLRNHLISFYSKCRR-------PCCARRVFDEIPDPCHVSWSS 73

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +++ +  NG P  A++ F  M   G+  + +AL   L     V DA+ G QV A    +G
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATG 130

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEI-PVKNSVCANALLSGYCEAKLWAGGLELV 175
           + S VFV +AL+ +Y     + DA  +FDE    +N+V  N L+S Y +       +++ 
Sbjct: 131 FGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVF 190

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
             M   G+    F  S ++ AC G    + GRQVHA ++R       DVF  ++L++MY 
Sbjct: 191 GEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVR--MGYEKDVFTANALVDMYV 248

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           K G V  A  +F       E   + DVV W +++     NG+    I+L   M  +G  P
Sbjct: 249 KMGRVDIASVIF-------EKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVP 301

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAW 353
           +     +++ AC+  G   LG +   +M+   K     + Y    LVD+  +   LD A 
Sbjct: 302 NVFMLSSILKACAGAGAFDLGRQIHGFMI---KANADSDDYIGVGLVDMYAKNHFLDDAM 358

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           K+ + M  R      + +W AL+S C   G+ +
Sbjct: 359 KVFDWMSHR-----DLILWNALISGCSHGGRHD 386



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 170/370 (45%), Gaps = 38/370 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N ++S + +N     A++ F  M   GI    +     + A T  ++   G+QV
Sbjct: 165 RNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV 224

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V + G+   VF  +AL+D+Y K+  +  A ++F+++P  + V  NAL+SG       
Sbjct: 225 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +EL+  M + GL  + F LS++L+ACAG  A + GRQ+H +MI+   N  +D ++  
Sbjct: 285 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIK--ANADSDDYIGV 342

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            L++MY K   +  A++VF+   HR       D++LW +++      G   E   ++  +
Sbjct: 343 GLVDMYAKNHFLDDAMKVFDWMSHR-------DLILWNALISGCSHGGRHDEAFSIFYGL 395

Query: 289 LMNGTKPDEVAFVTV------ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY---SCL 339
              G   +      V      + A S T QV    E   ++   + +    + Y   SCL
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 340 VDLL-----CRAGELDKAWKLINEMLDRGHGSSSVSMW---------------GALLSAC 379
            D +     C +G++     +I  +    HG  ++ ++                +LL+AC
Sbjct: 456 SDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 380 HDCGKFELGK 389
                +E GK
Sbjct: 516 ASLSAYEQGK 525


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 127/414 (30%), Positives = 227/414 (54%), Gaps = 17/414 (4%)

Query: 37  GTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G + + +K    +  R+ + ++ +++ F   G P+ A++ +  M   G+  D   +   +
Sbjct: 152 GAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVM 211

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A  +  DAR G  V  ++ +      V + ++L+D+YAK  L   A  +F+ +P +N V
Sbjct: 212 QACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDV 271

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             +AL+S   +       L L R+M   GL  +   +   L AC+ L   + G+ +H ++
Sbjct: 272 SWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFI 331

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           +R    L  D  + +++I+MY KCG ++ A  +F+         +++D++ W  M+   G
Sbjct: 332 LR---TLELDRMVGTAVIDMYSKCGSLSSAQMLFDKV-------VSRDLISWNVMIACCG 381

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +G  ++ + L++ M  N  +PD   F +++SA SH+G V+ G  +F  MV++Y +EPG 
Sbjct: 382 AHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGE 441

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           +H  C+VDLL R+G +++A  L+  +    H   ++S+  ALLS C +  K ELG+  A+
Sbjct: 442 KHLVCIVDLLARSGLVEEANGLVASL----HSKPTISILVALLSGCLNNNKLELGESTAE 497

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           K LEL P +VG+  ++SNLYA    W ++ ++R+LMK+ G KK  GCS IE+ G
Sbjct: 498 KILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRG 551



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 182/389 (46%), Gaps = 29/389 (7%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +P +   +N +++   R  SP  AL+ F  +       D+     +L+A   + D   G+
Sbjct: 65  SPSSIPAWNALLAAHSRGASPHEALRVFRALPP-AARPDSTTFTLALSACARLGDLATGE 123

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            V    + +G+ + +FV S++++LYAK   + DA  +FD +  ++ V  + +++G+  A 
Sbjct: 124 VVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAG 183

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                +E+   M   GL+ D   +  +++ACA    A  G  VH Y++R    +  DV +
Sbjct: 184 QPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQM--DVVI 241

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +SL++MY K GL  +A +VF L  HR +       V W++++    + G   E + L+ 
Sbjct: 242 STSLVDMYAKNGLFDQARRVFELMPHRND-------VSWSALISQLAQYGNADEALGLFR 294

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M ++G  P+    V  + ACS  G +KLG     +++   +L+      + ++D+  + 
Sbjct: 295 MMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRMVG--TAVIDMYSKC 352

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNVG 404
           G L  A  L ++++ R      +  W  +++ C  H  G+  L      K  E+ P +  
Sbjct: 353 GSLSSAQMLFDKVVSR-----DLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHAT 407

Query: 405 IYVMLSNLY-------AKF---CMWDEIG 423
              +LS L         KF   CM +E G
Sbjct: 408 FASLLSALSHSGLVEEGKFWFNCMVNEYG 436


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 234/446 (52%), Gaps = 18/446 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHA     GL  +  I   + L+  YTTC   +    + + +K    R+ + + V+I  +
Sbjct: 281 VHAQCMNAGL--VDDIRVATSLIRMYTTCGSIEGARRVFDNMKV---RDVVSWTVMIEGY 335

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             NG+   A   F+ M   GI  D       + A     +    +++ + V  +G+ + +
Sbjct: 336 AENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDL 395

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            V +AL+ +YAK   I DA  +FD +P ++ V  +A++  Y E        E   LM   
Sbjct: 396 LVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRS 455

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            ++ D  T   LL AC  L A + G +++   I+   +L + V + ++LI M  K G V 
Sbjct: 456 NIEPDGVTYINLLNACGHLGALDVGMEIYTQAIK--ADLVSHVPLGNALIIMNAKHGSVE 513

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           +A  +F+         + +DV+ W +M+G Y  +G  +E + L++ ML    +P+ V FV
Sbjct: 514 RARYIFDTM-------VRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFV 566

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            V+SACS  G V  G  +F +++    + P  + Y C+VDLL RAGELD+A  LI  M  
Sbjct: 567 GVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPV 626

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +     + S+W +LL AC   G  ++ + AA++ L +DP++  +YV LS++YA   MW+ 
Sbjct: 627 K----PTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWEN 682

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
           + ++R++M+ +G++K+ GC+WIEV G
Sbjct: 683 VAKVRKVMESRGIRKEQGCTWIEVAG 708



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 154/331 (46%), Gaps = 15/331 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+   FNV++  + ++G    A + F  M   G+  +  +  S L    + +   +G
Sbjct: 219 LHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWG 278

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V A    +G +  + V ++LI +Y     I  A  +FD + V++ V    ++ GY E 
Sbjct: 279 KAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAEN 338

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                   L   M   G+  D  T   ++ ACA  +     R++H+ +       G D+ 
Sbjct: 339 GNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV--DIAGFGTDLL 396

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L+ MY KCG +  A QVF+    R       DVV W++M+G Y  NGY  E  + +
Sbjct: 397 VSTALVHMYAKCGAIKDARQVFDAMPRR-------DVVSWSAMIGAYVENGYGTEAFETF 449

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M  +  +PD V ++ +++AC H G + +G+E +   +    +   P   + L+ +  +
Sbjct: 450 HLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLG-NALIIMNAK 508

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            G +++A  + + M+ R      V  W A++
Sbjct: 509 HGSVERARYIFDTMVRR-----DVITWNAMI 534



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 167/375 (44%), Gaps = 18/375 (4%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y+ C    N+         +  +  + +N +I+ + + G    A   F  M   G+    
Sbjct: 102 YSIC---GNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSI 158

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
               S L A +S     +GK+V A V  +G++S   +G+AL+ +Y K   + DA  +FD 
Sbjct: 159 ITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDG 218

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           + +++    N ++ GY ++  W    EL   M  +GL  +  +  ++L  C    A  +G
Sbjct: 219 LHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWG 278

Query: 207 RQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
           + VHA    +C N G  +D+ + +SLI MY  CG +  A +VF+    R       DVV 
Sbjct: 279 KAVHA----QCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVR-------DVVS 327

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           WT M+  Y  NG  ++   L+  M   G +PD + ++ +++AC+ +  +    E     V
Sbjct: 328 WTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHS-QV 386

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
                       + LV +  + G +  A ++ + M  R   S S +M GA +   +    
Sbjct: 387 DIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWS-AMIGAYVENGYGTEA 445

Query: 385 FELGKLAAQKALELD 399
           FE   L  +  +E D
Sbjct: 446 FETFHLMKRSNIEPD 460



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 125/257 (48%), Gaps = 12/257 (4%)

Query: 51  PLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110
           P+P     S F R    + A      +   G  +D+          T ++DA  GKQV+ 
Sbjct: 25  PVPSARFRSTFTRR---VGANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRD 81

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
           H+ + G   +++  + LI LY+    + +A  +FD +  K  V  NAL++GY +      
Sbjct: 82  HIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKE 141

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
              L R M   GL+    T  ++L AC+  +   +G++VHA ++       +D  + ++L
Sbjct: 142 AFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVV--TAGFVSDFRIGTAL 199

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           + MY K G +  A QVF       +G   +DV  +  M+G Y ++G +++  +L+  M  
Sbjct: 200 VSMYVKGGSMDDARQVF-------DGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQ 252

Query: 291 NGTKPDEVAFVTVISAC 307
            G KP++++F++++  C
Sbjct: 253 VGLKPNKISFLSILDGC 269


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 137/397 (34%), Positives = 218/397 (54%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I+ + +      AL TF  M   GI  D   L ++++A   ++  + G+Q+
Sbjct: 537 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 596

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A    SG+ S +   +AL+ LY+K   I +A L F++    +++  NAL+SG+ ++   
Sbjct: 597 HAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNN 656

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L +   M   G+D ++FT  + ++A +  +  + G+QVHA + +   +   +V   +
Sbjct: 657 EEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVC--N 714

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           ++I MY KCG ++ A + F      LE  + K+ V W +M+  Y ++G+  E +  ++ M
Sbjct: 715 AIISMYAKCGSISDAKKQF------LELSM-KNEVSWNAMINAYSKHGFGSEALDSFDQM 767

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           + +  +P+ V  V V+SACSH G V  GIEYFE M  +Y L P PEHY C+VD+L RAG 
Sbjct: 768 IHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGL 827

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A   I EM           +W  LLSAC      E+G+ AA   LEL+P +   YV+
Sbjct: 828 LSRAKDFILEM----PIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVL 883

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSNLYA    WD     R+ MKEKG+KK+ G SWIEV
Sbjct: 884 LSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEV 920



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 15/322 (4%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS   +N   + A++ F  M+V GI    YA  S L+A   ++    G+Q+   V K G
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           + S  +V +AL+ LY  L  +  AE +F  +  +++V  N L++G  +       +EL +
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M   GL+ D  TL++L+ AC+       G+Q+HAY  +      ++  ++ +L+ +Y K
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTK--LGFASNDKIEGALLNLYAK 419

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           C  +  AL  F      LE E+ ++VVLW  ML  YG     +   +++  M +    P+
Sbjct: 420 CSDIETALNYF------LETEV-ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 472

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
           +  + +++  C   G ++LG E     +     +      S L+D+  + G+LD AW   
Sbjct: 473 QYTYPSILKTCIRLGDLELG-EQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAW--- 528

Query: 357 NEMLDRGHGSSSVSMWGALLSA 378
            ++L R  G   VS W  +++ 
Sbjct: 529 -DILIRFAGKDVVS-WTTMIAG 548



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 157/346 (45%), Gaps = 25/346 (7%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+ + +N +I+   + G    A++ F  M + G+  D+  L S + A +S      G
Sbjct: 332 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSG 391

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ A+ TK G+ S+  +  AL++LYAK   I  A   F E  V+N V  N +L  Y   
Sbjct: 392 QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLL 451

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                   + R M    +  + +T  ++L+ C  L   E G Q+H+ +I+    L  + +
Sbjct: 452 DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQL--NAY 509

Query: 226 MQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           + S LI+MY K G +  A  +    AG        KDVV WT+M+  Y +  +  + +  
Sbjct: 510 VCSVLIDMYAKLGKLDTAWDILIRFAG--------KDVVSWTTMIAGYTQYNFDDKALTT 561

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLV 340
           +  ML  G + DEV     +SAC+    +K G +     +H      G        + LV
Sbjct: 562 FRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-----IHAQACVSGFSSDLPFQNALV 616

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            L  + G +++A+ L  E  + G   +    W AL+S     G  E
Sbjct: 617 TLYSKCGNIEEAY-LAFEQTEAGDNIA----WNALVSGFQQSGNNE 657



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 123/251 (49%), Gaps = 10/251 (3%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78
           FQ+ L+  Y+ C    N+       +     + + +N ++S F ++G+   AL+ F+ M+
Sbjct: 611 FQNALVTLYSKC---GNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMN 667

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
             GI  + +   S++ A++   + + GKQV A +TK+G+ S   V +A+I +YAK   I 
Sbjct: 668 REGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSIS 727

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           DA+  F E+ +KN V  NA+++ Y +    +  L+    M    +  +H TL  +L AC+
Sbjct: 728 DAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 787

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            +   + G +    M  +   L         +++M  + GL+++A          LE  I
Sbjct: 788 HIGLVDKGIEYFESMNTE-YGLAPKPEHYVCVVDMLTRAGLLSRAKDFI------LEMPI 840

Query: 259 NKDVVLWTSML 269
             D ++W ++L
Sbjct: 841 EPDALVWRTLL 851



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ A +   G   S  V + LIDLY++   +  A  +FD + +K+     A++SG  + 
Sbjct: 190 EQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKN 249

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +     + L   M  LG+    +  S++L AC  + + E G Q+H  +++      +D +
Sbjct: 250 ECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK--LGFSSDTY 307

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L+ +Y   G +  A  +F+    R       D V + +++    + GY ++ ++L+
Sbjct: 308 VCNALVSLYFHLGSLISAEHIFSNMSQR-------DAVTYNTLINGLSQCGYGEKAMELF 360

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTG 311
           + M ++G +PD     +++ ACS  G
Sbjct: 361 KRMQLDGLEPDSNTLASLVVACSSDG 386



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 17/199 (8%)

Query: 182 GLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
           G+  +H TL  LL  C   + + + GR++H+ +++      N+  +   L++ Y   G +
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK--LGFDNNACLSEKLLDFYLFKGDL 119

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             AL+VF+    R        +  W  M+          +V  L+  M+     P+E  F
Sbjct: 120 DGALKVFDEMPERT-------IFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTF 172

Query: 301 VTVISACSHTGQVKLG-IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
             V+ AC   G V    +E     +    L       + L+DL  R G +D+A ++ + +
Sbjct: 173 SGVLEAC-RGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGL 231

Query: 360 LDRGHGSSSVSMWGALLSA 378
             + H S     W A++S 
Sbjct: 232 YLKDHSS-----WVAMISG 245


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  227 bits (578), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 220/403 (54%), Gaps = 13/403 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
             +++ R+ + +N +IS     G    A   F  +   G+ ++   L + L ++ S++ A
Sbjct: 268 FDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAA 327

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
              +QV A   K G++    V + LID Y K   + DA  +F+E    + +   ++++  
Sbjct: 328 SATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITAL 387

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +     G ++L   M   GL+ D F LS+LL ACA LSA E G+QVHA++I++     +
Sbjct: 388 SQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR--QFMS 445

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D F  ++L+  Y KCG +  A   F+    R        VV W++M+G   ++G+ K  +
Sbjct: 446 DAFAGNALVYTYAKCGSIEDAELAFSSLPER-------GVVSWSAMIGGLAQHGHGKRAL 498

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L+  M+  G  P+ +   +V+ AC+H G V     YF  M   + ++   EHYSC++DL
Sbjct: 499 ELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDL 558

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG+LD A +L+N M  +    ++ S+WGALL A       ELGKLAA+K   L+P  
Sbjct: 559 LGRAGKLDDAMELVNSMPFQ----ANASVWGALLGASRVHKDPELGKLAAEKLFILEPEK 614

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G +V+L+N YA   MW+E+ ++R+LMK+  +KK+   SW+EV
Sbjct: 615 SGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEV 657



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 171/372 (45%), Gaps = 38/372 (10%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           + RN + +N ++S + +N     A++ F  M   GI    +     + A T  ++   G+
Sbjct: 70  SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGR 129

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           QV A V + G+   VF  +AL+D+Y K+  +  A ++F+++P  + V  NAL+SG     
Sbjct: 130 QVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 189

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                +EL+  M + GL  + F LS++L+ACAG  A + GRQ+H +MI+   N  +D ++
Sbjct: 190 HDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIK--ANADSDDYI 247

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
              L++MY K   +  A++VF+   HR       D++LW +++      G   E   ++ 
Sbjct: 248 GVGLVDMYAKNHFLDDAMKVFDWMSHR-------DLILWNALISGCSHGGRHDEAFSIFY 300

Query: 287 AMLMNGTKPDEVAFVTV------ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY---S 337
            +   G   +      V      + A S T QV    E   ++   + +    + Y   S
Sbjct: 301 GLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCS 360

Query: 338 CLVDLL-----CRAGELDKAWKLINEMLDRGHGSSSVSMW---------------GALLS 377
           CL D +     C +G++     +I  +    HG  ++ ++                +LL+
Sbjct: 361 CLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLN 420

Query: 378 ACHDCGKFELGK 389
           AC     +E GK
Sbjct: 421 ACASLSAYEQGK 432



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 145/313 (46%), Gaps = 23/313 (7%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  + +AL   L     V DA+ G QV A    +G+ S VFV +AL+ +Y     
Sbjct: 1   MRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 137 IHDAELMFDEI-PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
           + DA  +FDE    +N+V  N L+S Y +       +++   M   G+    F  S ++ 
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC G    + GRQVHA ++R       DVF  ++L++MY K G V  A  +F       E
Sbjct: 118 ACTGSRNIDAGRQVHAMVVR--MGYEKDVFTANALVDMYVKMGRVDIASVIF-------E 168

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
              + DVV W +++     NG+    I+L   M  +G  P+     +++ AC+  G   L
Sbjct: 169 KMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDL 228

Query: 316 GIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           G +   +M+   K     + Y    LVD+  +   LD A K+ + M  R      + +W 
Sbjct: 229 GRQIHGFMI---KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR-----DLILWN 280

Query: 374 ALLSACHDCGKFE 386
           AL+S C   G+ +
Sbjct: 281 ALISGCSHGGRHD 293


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 149/454 (32%), Positives = 236/454 (51%), Gaps = 32/454 (7%)

Query: 3   HAHQFETGLLLICLI---IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVIS 59
           H  Q  + ++ +CL       + L+  Y+ C     L         +   + + +N +I 
Sbjct: 362 HGRQIHSYVIKVCLEHDNFVTNALIDMYSKC---NALDDAKRVFDVVTCHSVVYYNAMIE 418

Query: 60  DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS 119
            + R G    AL+ F  M +  +        S L  S ++   +  KQ+   + K G+  
Sbjct: 419 GYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSL 478

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC------EAKLWAGGLE 173
             F  SALID+Y+K   I DA  +F+    K+ V  N+L SGY       EA      L+
Sbjct: 479 DKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQ 538

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R  P      + FT +AL  A + L++   G+Q H  +++    L +D F+ ++L++M
Sbjct: 539 LSRERP------NEFTFAALTTAASILASLPHGQQFHNQVMK--MGLESDPFITNALVDM 590

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V +A ++F+         + KD   W SM+ +Y ++G  +E ++++E M+ N  
Sbjct: 591 YAKCGSVEEAEKIFS-------SSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNI 643

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            P+ V FV+V+SACSH G V+ G++++  M   Y +EPG EHY+ +V LL RAG L +A 
Sbjct: 644 NPNYVTFVSVLSACSHVGFVEDGLQHYNSMAR-YGIEPGIEHYASVVTLLGRAGRLTEAR 702

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           + I +M  R     +  +W +LLSAC   G  EL K AA+ A+ +DP + G YVMLSN++
Sbjct: 703 EFIEKMTIR----PAALVWRSLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIF 758

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A   MW ++ +LR  M   G+ K+ G SWIEV G
Sbjct: 759 ASKGMWGDVKRLRLKMDVNGVVKEPGQSWIEVNG 792



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 161/314 (51%), Gaps = 19/314 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           RN + ++ V+S + + G    AL  F  F       L+ Y L S + A         G Q
Sbjct: 104 RNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQ 163

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V ++V KSG+   V+VG++L+ LYAK   I  A L+FD + +K  V   A+++GY ++  
Sbjct: 164 VHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGR 223

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               L+L  LM    +  D + LS++L AC+ L   + G+Q+HAY++R    +  DV   
Sbjct: 224 SEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKM--DVSTY 281

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           + LI+ Y KCG V     +F+    RL+    K+++ WT+M+  Y +N Y  E ++L   
Sbjct: 282 NVLIDFYTKCGRVKAGKALFD----RLDV---KNIISWTTMIAGYMQNSYDWEAVELVGE 334

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLL 343
           M   G KPDE A  +V+++C     ++ G +     +H Y ++   EH     + L+D+ 
Sbjct: 335 MFRMGWKPDEYACSSVLTSCGSVDALQHGRQ-----IHSYVIKVCLEHDNFVTNALIDMY 389

Query: 344 CRAGELDKAWKLIN 357
            +   LD A ++ +
Sbjct: 390 SKCNALDDAKRVFD 403



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 172/367 (46%), Gaps = 17/367 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ +N + +  +I+ + +N     A++    M   G   D YA  S LT+  SV   + G
Sbjct: 304 LDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHG 363

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ ++V K       FV +ALID+Y+K   + DA+ +FD +   + V  NA++ GY   
Sbjct: 364 RQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQ 423

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
               G LE+ + M    +     T  +LL   A L   +  +Q+H  +I+   +L  D F
Sbjct: 424 GYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSL--DKF 481

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
             S+LI++Y KC  +  A  VF       EG  NKD+V+W S+   Y      +E  KLY
Sbjct: 482 TSSALIDVYSKCSCIRDARYVF-------EGTTNKDIVVWNSLFSGYNLQLKSEEAFKLY 534

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             + ++  +P+E  F  + +A S    +  G + F   V    LE  P   + LVD+  +
Sbjct: 535 SDLQLSRERPNEFTFAALTTAASILASLPHG-QQFHNQVMKMGLESDPFITNALVDMYAK 593

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNV 403
            G +++A K+ +  + +       + W +++S     GK E  L       +  ++P+ V
Sbjct: 594 CGSVEEAEKIFSSSVWK-----DTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYV 648

Query: 404 GIYVMLS 410
               +LS
Sbjct: 649 TFVSVLS 655



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 130/253 (51%), Gaps = 9/253 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           + P+ +  +I+ + ++G    +L+ F+ M    +  D Y L S L A + +   + GKQ+
Sbjct: 206 KTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQI 265

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A+V +S     V   + LID Y K   +   + +FD + VKN +    +++GY +    
Sbjct: 266 HAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYD 325

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +ELV  M  +G   D +  S++L +C  + A + GRQ+H+Y+I+ C  L +D F+ +
Sbjct: 326 WEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVC--LEHDNFVTN 383

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KC  +  A +VF++            VV + +M+  Y R GY    +++++ M
Sbjct: 384 ALIDMYSKCNALDDAKRVFDVV-------TCHSVVYYNAMIEGYSRQGYLCGALEVFQEM 436

Query: 289 LMNGTKPDEVAFV 301
            +    P  + FV
Sbjct: 437 RLKHVSPSFLTFV 449



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 160/338 (47%), Gaps = 33/338 (9%)

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           S    N  P+  L +FS  +V    +   AL + L A  S K   + ++V   V   G  
Sbjct: 18  SSISPNVQPM--LPSFSSQNVK---VKGRALANLLLAPVSNKSILYYRKVHCQVVLWGLQ 72

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS-----GYCEAKLWAGGLE 173
             VF+ + L+  Y K+  + DA  +FD++P +N V  ++++S     GY E  L    L 
Sbjct: 73  YDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKAL----LY 128

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
            +          + + L++++RAC      E G QVH+Y+I+     G DV++ +SL+ +
Sbjct: 129 FLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKS--GFGEDVYVGTSLVVL 186

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G + KA  VF       +G + K  V WT+++  Y ++G  +  ++L+  M+ +  
Sbjct: 187 YAKHGEIDKARLVF-------DGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNV 239

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE----HYSCLVDLLCRAGEL 349
            PD+    ++++ACS  G +K G +     +H Y L    +     Y+ L+D   + G +
Sbjct: 240 IPDKYVLSSILNACSVLGYLKGGKQ-----IHAYVLRSETKMDVSTYNVLIDFYTKCGRV 294

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
            KA K + + LD  +  S  +M    +   +D    EL
Sbjct: 295 -KAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVEL 331


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/450 (31%), Positives = 233/450 (51%), Gaps = 33/450 (7%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H H F+  + +       + L+  Y  C    ++ +       +  RN + +N +I  F
Sbjct: 36  IHKHGFDANIFV------GTALVDMYAKC---ADMHSAVRVFDQMPERNLVSWNSMIVGF 86

Query: 62  CRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
             N     A+  F   +    +  +  ++ S L+A  ++    FG+QV   V K G +  
Sbjct: 87  FHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPL 146

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            +V ++L+D+Y K     +   +F  +  ++ V  N L+ G+ +   +        +M  
Sbjct: 147 TYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRR 206

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR-----KCCNLGNDVFMQSSLIEMYG 235
            G+  D  + S +L + A L+A   G  +H  +I+       C LG       SLI MY 
Sbjct: 207 EGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILG-------SLITMYA 259

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG +  A QVF       EG  + +V+ WT+M+  Y  +G   +VI+L+E ML  G +P
Sbjct: 260 KCGSLVDAYQVF-------EGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEP 312

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
             V FV V+SACSHTG+V+ G+ +F  M   + + PGPEHY+C+VDLL RAG LD+A + 
Sbjct: 313 SHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRF 372

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
           I  M  +     + S+WGALL AC   G  ++G+ AA++  E++P+N G YV+L+N+  +
Sbjct: 373 IESMPMK----PTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTR 428

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
               +E  ++R LM   G++K+ GCSWI+V
Sbjct: 429 SGRLEEANEVRRLMGVNGVRKEPGCSWIDV 458



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 166/341 (48%), Gaps = 26/341 (7%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G + + +   S L+AS +      G+Q+ + + K G+ +++FVG+AL+D+YAK   
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-LMPALGLDYDHFTLSALLR 195
           +H A  +FD++P +N V  N+++ G+    L+   + + + ++    +  +  ++S++L 
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           ACA +    FGRQVH  +++    L    ++ +SL++MY KC    + +++F   G R  
Sbjct: 121 ACANMGGLNFGRQVHGVVVK--FGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDR-- 176

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
                DVV W  ++  + +N  F+E    +  M   G  PDE +F TV+ + +    +  
Sbjct: 177 -----DVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQ 231

Query: 316 GIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
           G       +HD  ++ G     C    L+ +  + G L  A+++   + D      +V  
Sbjct: 232 GTA-----IHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDH-----NVIS 281

Query: 372 WGALLSA--CHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           W A++SA   H C    +       +  ++P +V    +LS
Sbjct: 282 WTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLS 322


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 210/400 (52%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           + P+ +  ++  + + G    ALK F  +   G+  D++     L A  S+++ RFGKQ+
Sbjct: 246 KKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQI 305

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V K G    V VG+ L+D Y K      A   F EI   N V  +A++SGYC+   +
Sbjct: 306 HACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQF 365

Query: 169 AGGLELVR-LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              ++  + L     +  + FT +++ +AC+ L+    G QVHA  I++  +L    + +
Sbjct: 366 EEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKR--SLIGSQYGE 423

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+LI MY KCG +  A +VF       E   N D+V WT+ +  +   G   E ++L+E 
Sbjct: 424 SALITMYSKCGCLDDAHEVF-------ESMDNPDIVAWTAFISGHAYYGNASEALRLFEK 476

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M+  G KP+ V F+ V++ACSH G V+ G  Y + M+  Y + P  +HY C++D+  R+G
Sbjct: 477 MVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSG 536

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            LD+A + +  M       S    W   LS C      ELGK+A ++  +LDP +   YV
Sbjct: 537 LLDEALRFMKNMPFEPDAMS----WKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAGYV 592

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +  NLY     W+E  ++ +LM E+ LKK++ CSWI+  G
Sbjct: 593 LPFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKG 632



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 192/444 (43%), Gaps = 58/444 (13%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPR---NPLPFNVVISDFCRNGSPLYALKT 73
           ++ Q+ ++  Y  C      G+L +  K  +     N +    +IS +   G    A+  
Sbjct: 116 VLLQNCVLQMYCEC------GSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGL 169

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           FS M   G    +    + L +  + +    G+Q+ AHV ++G  S+  + + ++++Y K
Sbjct: 170 FSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVK 229

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A+ +FD++ VK  V    L+ GY +A      L+L   +   G+++D F  S +
Sbjct: 230 CGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVV 289

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L+ACA L    FG+Q+HA + +    L  +V + + L++ Y KC     A + F      
Sbjct: 290 LKACASLEELRFGKQIHACVAK--LGLECEVSVGTPLVDFYIKCSSFESACRAFQ----- 342

Query: 254 LEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACS--- 308
              EI + + V W++++  Y +   F+E +K ++++   N    +   + ++  ACS   
Sbjct: 343 ---EIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLA 399

Query: 309 --------HTGQVK---LGIEYFEWM----------------VHDYKLEPGPEHYSCLVD 341
                   H   +K   +G +Y E                  V +    P    ++  + 
Sbjct: 400 DCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFIS 459

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
                G   +A +L  +M+  G   +SV+ + A+L+AC   G  E GK      L    +
Sbjct: 460 GHAYYGNASEALRLFEKMVSCGMKPNSVT-FIAVLTACSHAGLVEQGKHYLDTMLR--KY 516

Query: 402 NVGI----YVMLSNLYAKFCMWDE 421
           NV      Y  + ++YA+  + DE
Sbjct: 517 NVAPTIDHYDCMIDIYARSGLLDE 540



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 143/332 (43%), Gaps = 15/332 (4%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N+ +    ++G    A + F  M   G+ +  Y+      A   ++    G+ +   +  
Sbjct: 50  NLHLVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRM 109

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
                SV + + ++ +Y +   + DA+ +FDE+   N+V    ++S Y E  L    + L
Sbjct: 110 GIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGL 169

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              M   G        + LL++     A + GRQ+HA++IR    L ++  +++ ++ MY
Sbjct: 170 FSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIR--AGLCSNASIETGIVNMY 227

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG +  A +VF+           K  V WT ++  Y + G  ++ +KL+  ++  G +
Sbjct: 228 VKCGWLVGAKRVFDQMA-------VKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVE 280

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
            D   F  V+ AC+   +++ G +     V    LE      + LVD   +    + A +
Sbjct: 281 WDSFVFSVVLKACASLEELRFG-KQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACR 339

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
              E+ +    S     W A++S      +FE
Sbjct: 340 AFQEIREPNDVS-----WSAIISGYCQMSQFE 366


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/408 (33%), Positives = 226/408 (55%), Gaps = 21/408 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+ + +N +I+ + + G    AL+ F  MHV G+    + +   L+   S  D   G
Sbjct: 171 LSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNG 230

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V   V K G+ S V V +ALID+Y K   I DA ++F+ I  K+    N+++S + + 
Sbjct: 231 KTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQC 290

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND-- 223
               G L L   M   G+  D  T++ +L AC+ L+A   GR++H YMI     LG D  
Sbjct: 291 GDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIIN--GLGKDDE 348

Query: 224 ------VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
                 + + +++++MY KCG +  AL++F+           KDV  W  M+  YG +GY
Sbjct: 349 NGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMS-------KKDVASWNIMIMGYGMHGY 401

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
             E + ++  M     KP+EV  V V+SAC+H G V  G  +   M   + + P  EHY+
Sbjct: 402 ALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYT 461

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397
           C++D+L RAG L+ A++++ +M  +    ++  +W ALL AC   G  EL ++AA++ L+
Sbjct: 462 CVIDMLGRAGHLEDAYEIVQKMPIQ----ANPVVWRALLGACRLHGNAELAEIAARQVLQ 517

Query: 398 LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L+P + G YV++SN+Y     ++E+ ++R+ MKE+ +KK  GCSWIE+
Sbjct: 518 LEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIEL 565



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 176/379 (46%), Gaps = 27/379 (7%)

Query: 43  LKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           L F +P   RN   +N +IS F  NG      + +  M + G+  D Y     +     V
Sbjct: 67  LVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEV 126

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
            +    K++   + K G    VFVGSAL++ Y K   + DA+ +F E+ +++ V  NA++
Sbjct: 127 MEV---KKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMI 183

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           +GY +       LE+ R M   G+    FT++ +L   A     + G+ VH  +++   +
Sbjct: 184 NGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYD 243

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
            G  V + ++LI+MYGKC  +  AL +F +          KD+  W S++ V+ + G   
Sbjct: 244 SG--VSVSNALIDMYGKCKHIGDALIIFEMINE-------KDIFSWNSIISVHEQCGDHD 294

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---- 335
             ++L++ ML +G  PD V   TV+ ACSH   +  G E   +M+ +  L    E+    
Sbjct: 295 GTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIIN-GLGKDDENGAVD 353

Query: 336 ----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
                + ++D+  + G ++ A K+ + M  +   S ++ + G      H      LG  +
Sbjct: 354 NLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMG---YGMHGYALEALGMFS 410

Query: 392 AQKALELDPHNVGIYVMLS 410
                E  P+ V +  +LS
Sbjct: 411 QMCEAEFKPNEVTLVGVLS 429



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 134/284 (47%), Gaps = 21/284 (7%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF-DEIPVKNSVCANALLSGYC 163
           GKQ+ + +   G+  S    ++LI++Y+K   + +A L+F D    +N    NA++SG+ 
Sbjct: 30  GKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFV 89

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
              L + G +  + M   G+  D +T   ++R C  +      +++H  +++    L  D
Sbjct: 90  SNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV---KKIHGCLLKMGLEL--D 144

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVI 282
           VF+ S+L+  Y K G +  A +VF        GE++ +DVVLW +M+  Y + G   E +
Sbjct: 145 VFVGSALVNTYLKNGSMEDAQKVF--------GELSIRDVVLWNAMINGYAKIGCLDEAL 196

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +++  M + G  P       ++S  +  G +  G +    +V     + G    + L+D+
Sbjct: 197 EVFRRMHVKGVAPSRFTITGILSVFASRGDLDNG-KTVHGIVMKMGYDSGVSVSNALIDM 255

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
             +   +  A  +I EM++       +  W +++S    CG  +
Sbjct: 256 YGKCKHIGDAL-IIFEMINE----KDIFSWNSIISVHEQCGDHD 294



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 25/191 (13%)

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           A L++CA       G+Q+H+ MI    +        +SLI MY KCG + +A+ VF    
Sbjct: 16  AFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSI--TSLINMYSKCGQMGEAILVFYDPC 73

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
           H       ++V  + +++  +  NG   +  + Y+ M + G  PD+  F  V+  C    
Sbjct: 74  HE------RNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVM 127

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           +VK         +H   L+ G E      S LV+   + G ++ A K+  E+  R     
Sbjct: 128 EVK--------KIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIR----- 174

Query: 368 SVSMWGALLSA 378
            V +W A+++ 
Sbjct: 175 DVVLWNAMING 185


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/397 (32%), Positives = 218/397 (54%), Gaps = 14/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +I+ + ++G     L++F  M +     D+      L+  + + D   G+ +
Sbjct: 386 KDSVTWNSLINGYTQSGYYKEGLESFKMMKMERK-PDSVTFVLLLSIFSQLADINQGRGI 444

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K G+ + + +G++L+D+YAK   + D   +F  +   + +  N +++        
Sbjct: 445 HCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDC 504

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             G +++  M   GL  D  T+  +L  C+ L+    G+++H Y+ +      ++V + +
Sbjct: 505 TVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS--GFESNVPIGN 562

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LIEMY KCG +   ++VF            KDVV WT+++  +G  G  K+ +K ++ M
Sbjct: 563 ALIEMYSKCGSLENCIKVFKYMKE-------KDVVTWTALISAFGMYGEGKKALKAFQDM 615

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            ++G  PD VAF+  I ACSH+G VK G+ +F+ M  DY LEP  EHY+C+VDLL R+G 
Sbjct: 616 ELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGL 675

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A + I  M  +       S+WGALLSAC   G   + +  ++K LEL+  + G YV+
Sbjct: 676 LAQAEEFILSMPMK----PDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVL 731

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +SN+YA    WD++  +R  MK KGLKK+ G SWIE+
Sbjct: 732 VSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEI 768



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 218/445 (48%), Gaps = 43/445 (9%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLP-FNVVIS 59
            VH+    +GL L   +IF  +L+  Y      K+  +  +  + ++P N +  +N +I 
Sbjct: 40  TVHSLIITSGLSLS--VIFSGKLISKYAQV---KDPISSVSVFRSISPTNNVYLWNSIIR 94

Query: 60  DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS 119
               NG    AL  ++ M    +  D +   S + +   + D   G  V  H  + G+ S
Sbjct: 95  ALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFES 154

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
            +++G+ALID+Y++ + + +A  +F+E+  ++SV  N+L+SGYC    W   L++     
Sbjct: 155 DLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFR 214

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
             G+  D FT+S++L AC  L A + G  VH  + +    +  DV + + L+ MY K   
Sbjct: 215 MTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEK--IGIAGDVIIGNGLLSMYFKFER 272

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           + +A +VF+           KD V W +M+  Y + G  +  +KL+  M+ +G  PD ++
Sbjct: 273 LREARRVFSKMAV-------KDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLS 324

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE--HYSC--LVDLLCRAGELDKAWKL 355
             + I AC  +G +++G       VH Y +  G E    +C  L+D+  + G+L  A   
Sbjct: 325 ITSTIRACGQSGDLQVG-----KFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAA--- 376

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD--PHNVGIYVMLSNLY 413
             E+ D      SV+ W +L++     G ++ G L + K ++++  P +V  +V+L +++
Sbjct: 377 -QEVFDTTKCKDSVT-WNSLINGYTQSGYYKEG-LESFKMMKMERKPDSV-TFVLLLSIF 432

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDV 438
           +         QL ++ + +G+  DV
Sbjct: 433 S---------QLADINQGRGIHCDV 448



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/253 (20%), Positives = 107/253 (42%), Gaps = 10/253 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I  + L+  Y  C     +  L     +++  + + +N VI+            +  + 
Sbjct: 457 LIIGNSLLDVYAKC---GEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINE 513

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D   +   L   + +   R GK++  ++ KSG+ S+V +G+ALI++Y+K   
Sbjct: 514 MRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGS 573

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + +   +F  +  K+ V   AL+S +         L+  + M   G+  D     A + A
Sbjct: 574 LENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFA 633

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+     + G +    M +   NL   +   + ++++  + GL+ +A +        L  
Sbjct: 634 CSHSGMVKEGLRFFDRM-KTDYNLEPRMEHYACVVDLLARSGLLAQAEEFI------LSM 686

Query: 257 EINKDVVLWTSML 269
            +  D  LW ++L
Sbjct: 687 PMKPDASLWGALL 699


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/321 (35%), Positives = 192/321 (59%), Gaps = 13/321 (4%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           +A+I  Y K      A+++FD+IP ++    NA+++GY +       L+L   M  +G+ 
Sbjct: 237 TAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQ 296

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            DH TL ++L AC+ L++ + GR+ H  +++      + + + ++LI MY KCG +  + 
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRKTHVLVLKS--GYESRISICNALITMYCKCGSILDSE 354

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
             F    H        DVV W +M+  + R+G++   +  +  M  N  +PD + F++++
Sbjct: 355 LAFRQIDH-------PDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLL 407

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           SAC H G+V   + +F  M+  YK+ P PEH++CLVD+L R G+++KA+K+I EM     
Sbjct: 408 SACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEM----P 463

Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQ 424
             +   +WGALL+ACH     +LG+LAA+K +EL+P N G YV+LSN+YA   MW E+ +
Sbjct: 464 FEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTR 523

Query: 425 LRELMKEKGLKKDVGCSWIEV 445
           +R LM+E+G+KK    SW+E+
Sbjct: 524 VRGLMREQGVKKQPAYSWMEI 544



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 27/232 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +N +I+ + +NGS   ALK  S M   G+  D   L S LTA +S+   + G++ 
Sbjct: 262 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 321

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V KSG+ S + + +ALI +Y K   I D+EL F +I   + V  NA+++ +     +
Sbjct: 322 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFY 381

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ- 227
              L     M +  ++ D  T  +LL AC            HA  + +  N  N +    
Sbjct: 382 DRALASFGEMRSNRVEPDGITFLSLLSACG-----------HAGKVHESLNWFNSMIESY 430

Query: 228 ---------SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
                    + L+++  + G V KA ++        E     D  +W ++L 
Sbjct: 431 KIVPRPEHFACLVDILSRGGQVEKAYKIIQ------EMPFEADCGIWGALLA 476



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 142/349 (40%), Gaps = 49/349 (14%)

Query: 48  PRNP----LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           PR+P      F  +   F R   PL ++K FS   V+   +       +L  + ++  AR
Sbjct: 13  PRSPSIIRTIFLPIFHSFNRQFHPL-SIKLFSTQDVYAFNVQI----GNLARAGNIGAAR 67

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
                  H     W       +++I  Y K     +++ +F  +P KN V  N++++G  
Sbjct: 68  QLFDEMPHRDTVSW-------NSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCI 120

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           E +      +  + MP       +  +S L+R        E   ++   M R+      +
Sbjct: 121 EDERIDEAWQYFQAMPQRNTASWNAMISGLVR----YDRVEEASRLFEEMPRR------N 170

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V   +++++ Y K G + +A  +FN           K+VV WT M+  Y  NG F E   
Sbjct: 171 VISYTAMVDGYAKIGEIEQARALFNCMPQ-------KNVVSWTVMISGYVENGKFDEAEN 223

Query: 284 LYEAMLMNGTKPDE--VAFVTVISACSHTGQV-KLGIEYFEWMVHDYKLEPGPEHYSCLV 340
           L+E M      PD+  VA   +I+     G+  K  I + +    D         ++ ++
Sbjct: 224 LFEQM------PDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLA------SWNAMI 271

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
               + G  ++A KL ++ML  G      ++  ++L+AC      + G+
Sbjct: 272 TGYAQNGSGEEALKLHSQMLKMGMQPDHSTLI-SVLTACSSLASLQEGR 319


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/432 (31%), Positives = 232/432 (53%), Gaps = 17/432 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++ Q+ L+  Y  C     L         +N +N + ++ +I  +  + S   AL  +  
Sbjct: 245 VVLQTALLDMYAKCH---LLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDD 301

Query: 77  MH-VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
           M  ++G+      L + L A   + D + GK++  H+ KSG      VG++LI +YAK  
Sbjct: 302 MLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCG 361

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
           ++ +A    DE+  K++V  +A++SG  +       L + R M + G+     T+ ALL 
Sbjct: 362 IMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLP 421

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC+ L+A + G   H Y + +     ND  + +++I+MY KCG +T + ++F+    R++
Sbjct: 422 ACSHLAALQHGTCCHGYTVVR--GFTNDTSICNAIIDMYSKCGKITISREIFD----RMQ 475

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
              N+D++ W +M+  YG +G   E + L++ +   G KPD+V  + V+SACSH+G V  
Sbjct: 476 ---NRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTE 532

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G  +F  M  ++ ++P   HY C+VDLL RAG LD+A+  I  M        +V +WGAL
Sbjct: 533 GKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMP----FVPNVRIWGAL 588

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L+AC      E+G+  ++K   L P   G +V++SN+Y+    WD+   +R + +  G K
Sbjct: 589 LAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYK 648

Query: 436 KDVGCSWIEVTG 447
           K  GCSW+E++G
Sbjct: 649 KSPGCSWVEISG 660



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 194/416 (46%), Gaps = 29/416 (6%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H H    GL +   +   + L+  Y  C H     TL N +   + R+ + +N +I+ F
Sbjct: 129 IHTHAHILGLSMDLYV--STALLHMYAKCGHLYQAQTLFNSISHQD-RDIVAWNAMIAAF 185

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +      + + + M   G+  ++  L S L           GK + A+  ++ +  +V
Sbjct: 186 SFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNV 245

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            + +AL+D+YAK  L+  A  +F+ +  KN VC +A++ GY      +  L L   M  +
Sbjct: 246 VLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCI 305

Query: 182 -GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            GL+    TL+ +LRACA L+  + G+++H +MI+   +L  D  + +SLI MY KCG++
Sbjct: 306 YGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDL--DTTVGNSLISMYAKCGIM 363

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A+         L+  I KD V +++++    +NGY ++ + ++  M  +G  P     
Sbjct: 364 DNAVGF-------LDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETM 416

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLLCRAGELDKAWKLI 356
           + ++ ACSH   ++ G        H Y +  G  + +     ++D+  + G++  + ++ 
Sbjct: 417 IALLPACSHLAALQHGT-----CCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIF 471

Query: 357 NEMLDRGHGSSSVSMWGALL--SACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           + M +R      +  W  ++     H      L      +AL L P +V +  +LS
Sbjct: 472 DRMQNR-----DIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLS 522



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 7/191 (3%)

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I  A  +FD+IP  + V  N ++  Y  +  +   + L   M  LG+   +FT   LL+A
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+ L A + GR +H +       L  D+++ ++L+ MY KCG + +A  +FN   H+   
Sbjct: 117 CSSLQALQLGRLIHTHA--HILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQ--- 171

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
             ++D+V W +M+  +  +    + I     M   G  P+    V+++        +  G
Sbjct: 172 --DRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQG 229

Query: 317 IEYFEWMVHDY 327
                + + ++
Sbjct: 230 KAIHAYYIRNF 240



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
             LA H  +      VVLW  M+  Y  +G F++ I LY  ML  G  P    F  ++ A
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
           CS    ++LG        H   L       + L+ +  + G L +A  L N +    H  
Sbjct: 117 CSSLQALQLG-RLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSI---SHQD 172

Query: 367 SSVSMWGALLSA 378
             +  W A+++A
Sbjct: 173 RDIVAWNAMIAA 184


>gi|225216917|gb|ACN85213.1| EMB2261 putative [Oryza glaberrima]
          Length = 615

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 214/394 (54%), Gaps = 16/394 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  +IS F RN     A++ F S + ++G+  D     S +TA  + K     +Q  A V
Sbjct: 212 YTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQARQAHAQV 271

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G   +V V S+ +D+YAK  L+ +A  +FD + V N V   ALL GYC+   +   +
Sbjct: 272 VTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVSNEVSRCALLGGYCQNGEYEKVI 331

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
            L + M     D D ++L  +LRACAGLS+ + G+++H   +R       DV ++S+L++
Sbjct: 332 ALFKEMDKE--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAG--WRDVVVESALVD 387

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           +Y KCG V  A  VF       E    ++ + W +M+G + +NG+ +  I L+  M+  G
Sbjct: 388 LYAKCGAVDYAYSVF-------EASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREG 440

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            +PD ++F+ V+ ACSHTG V+ G  YF  M  DY + PG EHY+C+VDL  R   L++A
Sbjct: 441 PRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 500

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
             LIN+   R    +  S+W  +L A       ++ +  ++K +EL+P     Y++L N+
Sbjct: 501 EDLINKSPFR----NDSSLWADILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENV 556

Query: 413 YAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           Y     W++  ++R LM+ + +KK+ G SW++  
Sbjct: 557 YRTVGRWEDALEIRRLMESRKVKKEPGMSWVDAN 590



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 169/370 (45%), Gaps = 41/370 (11%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGIFLDTY 87
           R  ++L         L  R+ +  + +++ F R G P  AL +   M       +  + +
Sbjct: 85  RLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRDMLAGADDDVSPNAH 144

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           AL +++ A   ++D   G  +   V   G+     V S+L+D+Y  +    DA  +F+E+
Sbjct: 145 ALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDSVVLSSLVDMYGHVAAPGDARKVFEEM 204

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFG 206
              + +C  +L+S +     +   +   R M  + G+  D  T  +++ A          
Sbjct: 205 RAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQA 264

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           RQ HA ++ +   L  +V ++SS ++MY KCGL+ +A +VF+    ++  E+++      
Sbjct: 265 RQAHAQVVTR--GLCGNVIVESSTLDMYAKCGLMVEARKVFDRM--QVSNEVSR-----C 315

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE---YFEWM 323
           ++LG Y +NG +++VI L++   M+    D  +  TV+ AC+    VK G E    F  M
Sbjct: 316 ALLGGYCQNGEYEKVIALFKE--MDKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRM 373

Query: 324 V--HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI-----------NEML----DRGHGS 366
               D  +E      S LVDL  + G +D A+ +            N M+      GHG 
Sbjct: 374 AGWRDVVVE------SALVDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGE 427

Query: 367 SSVSMWGALL 376
            +++++  ++
Sbjct: 428 RAINLFNRMV 437



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 18/217 (8%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL--LIHDAELMFDEIPVKNSVCANALLS 160
           R G  +     ++G L+  ++ +AL+  Y +L   L H A   FD++P ++ V  +++L+
Sbjct: 55  RLGCCLHGRAARAGLLADRYLANALLAFYVRLPRHLPH-ALRAFDDLPRRDVVAHSSILA 113

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
            +  A +    L  +R M A G D D       LSA ++ACA L     G  +H  ++ +
Sbjct: 114 AFLRAGMPRRALASLRDMLA-GADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVR 172

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
               G+D  + SSL++MYG       A +VF       E     D + +TS++  + RN 
Sbjct: 173 --GFGDDSVVLSSLVDMYGHVAAPGDARKVF-------EEMRAPDGICYTSLISAFVRND 223

Query: 277 YFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQ 312
           +F+E ++ + +ML MNG +PD   F ++++A  ++ +
Sbjct: 224 WFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKR 260


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/404 (33%), Positives = 217/404 (53%), Gaps = 15/404 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +N +I+ +  NG    AL+ F  M    +  D   L S ++A         G
Sbjct: 156 ITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELG 215

Query: 106 KQVQAHVTKS----GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           +QV + V       G+ SS+ + +ALIDLY+K   +  A  +F+ +  K+ V  N L+ G
Sbjct: 216 RQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGG 275

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           Y    L+   L L + M   G   +  TL ++L ACA L A + GR +H Y+ +K   + 
Sbjct: 276 YTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVT 335

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           N+  +++SLI+MY KCG +  A QVFN   +R        +  W +M+  +  +G     
Sbjct: 336 NETSLRTSLIDMYAKCGDIEAAHQVFNSMLYR-------SLSSWNAMIFGFAMHGRANAA 388

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
             L+  M  N  +PD++ FV ++SACSH+G + LG + F+ M  DY L P  EHY C++D
Sbjct: 389 FDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMID 448

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           LL  +G   +A ++I+ M     G     +W +LL AC   G  EL +  AQK ++++P 
Sbjct: 449 LLGHSGLFKEAEEMIHTMPMEPDG----VIWCSLLKACKKHGNLELAESFAQKLIKIEPE 504

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           N G YV+LSN+YA    W+++ ++R ++  KG+KK  GCS IEV
Sbjct: 505 NSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEV 548



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 191/420 (45%), Gaps = 58/420 (13%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           H   L    +  + +   N L +N ++     +  P+ AL+ +  M   G   ++Y+   
Sbjct: 10  HFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPF 69

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD------ 145
            L +    K    G+Q+ A V K G     +V ++LI +YA+   + DA  +FD      
Sbjct: 70  LLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRD 129

Query: 146 -------------------------EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
                                    EI  ++ V  NA+++GY E   +   LEL + M  
Sbjct: 130 VVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMR 189

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCG 238
             +  D  TL +++ ACA   + E GRQVH+++     + G  + + + ++LI++Y KCG
Sbjct: 190 TNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            V  A  +F       EG   KDVV W +++G Y     +KE + L++ ML +G  P++V
Sbjct: 250 DVETAFGLF-------EGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDV 302

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVH---DYKLEPGPEHYS---CLVDLLCRAGELDKA 352
             ++V+ AC+H G + +G     W +H   D KL+      S    L+D+  + G+++ A
Sbjct: 303 TLLSVLPACAHLGAIDIG----RW-IHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAA 357

Query: 353 WKLINEMLDRGHGSSSVSMWGALL--SACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            ++ N ML R     S+S W A++   A H          +  +   ++P ++    +LS
Sbjct: 358 HQVFNSMLYR-----SLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLS 412


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/400 (34%), Positives = 217/400 (54%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I  + + G     +  F  M    +  D   L   L++   + D R G+++
Sbjct: 189 RDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKL 248

Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
             ++ ++  ++  VFVG+AL+D+Y K    + A  +F E+PVKN V  N+++SG  +   
Sbjct: 249 HRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQ 308

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +   L + R M  LG+  D  TL A+L +CA L   E G+ VHAY+ R    +  D F+ 
Sbjct: 309 FKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRN--QIRADGFIG 366

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L++MY KCG + +A  VF            KDV  +T+M+     +G   + + L+  
Sbjct: 367 NALVDMYAKCGSIDQACWVFQAMNR-------KDVYSYTAMIVGLAMHGQGGKALDLFSE 419

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G +PDEV FV V++ACSH G V+ G +YFE M   Y L P  EHY C+VDLL RAG
Sbjct: 420 MPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAG 479

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            +++A + I  M           + GALL AC   GK ELG+   +K  +++P   G YV
Sbjct: 480 LINEAEEFIRNM----PIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYV 535

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           ++SN+Y+    W +  +LR+ MKE+ L+K  GCS IE+ G
Sbjct: 536 LMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDG 575



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 172/366 (46%), Gaps = 24/366 (6%)

Query: 44  KFLNPRNPLPFNVVISDFC-RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           +   P  PL +N +I      N   +  L  +  M   GI  D Y +   L A    +  
Sbjct: 83  QLRTPNLPL-YNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAV 141

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G++V     K G  S V+V + L+ +YA   +I  A  +FD  P ++ V    ++ GY
Sbjct: 142 REGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGY 201

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +      G+ L   M    L  D  TL  +L +CA L     GR++H Y+IR   N+  
Sbjct: 202 VKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRN-SNVNL 260

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DVF+ ++L++MY KCG    A +VF       E  + K+VV W SM+    + G FKE +
Sbjct: 261 DVFVGNALVDMYLKCGDANFARKVFQ------EMPV-KNVVSWNSMISGLAQKGQFKESL 313

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY----KLEPGPEHYSC 338
            ++  M   G KPD+V  V V+++C++ G ++LG    +W VH Y    ++       + 
Sbjct: 314 YMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELG----KW-VHAYLDRNQIRADGFIGNA 368

Query: 339 LVDLLCRAGELDKA-WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397
           LVD+  + G +D+A W  + + ++R    S  +M   L  A H  G   L   +    + 
Sbjct: 369 LVDMYAKCGSIDQACW--VFQAMNRKDVYSYTAMIVGL--AMHGQGGKALDLFSEMPKMG 424

Query: 398 LDPHNV 403
           ++P  V
Sbjct: 425 IEPDEV 430


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/413 (33%), Positives = 219/413 (53%), Gaps = 17/413 (4%)

Query: 37  GTLTNCLKFLNPRNPLPFNVVISDFCRNGSPL-YALKTFSF---MHVHGIFLDTYALCSS 92
           G++T   +   P  P P + +     +  S   +++ T  F   M   G     Y   S 
Sbjct: 137 GSITYARRLF-PTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSV 195

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           + A   +   R GK++ +HV   G+ S ++V +ALI LYAK   +  A+ +FD +P +  
Sbjct: 196 IKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTI 255

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           +  N+L+SGY +  L    + L  LM   G   D  T+ +LL +C+ L A +FG  +H Y
Sbjct: 256 IAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDY 315

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
                 +L  +V + +SLI MY +CG V+KA +VF+    R       +VV WT+M+  Y
Sbjct: 316 ADGNGFDL--NVVLGTSLINMYTRCGNVSKAREVFDSMKER-------NVVTWTAMISGY 366

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           G +GY ++ ++L+  M   G +P+ + FV V+SAC+H+G +  G   F  M   Y L PG
Sbjct: 367 GMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPG 426

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
            EH  C+VD+  RAG L+ A++ I + + +  G    ++W ++L AC     F+LG   A
Sbjct: 427 VEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGP---AVWTSMLGACRMHRNFDLGVKVA 483

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +  L ++P N G YVMLSN+YA     D +  +R +M  + LKK VG S IE+
Sbjct: 484 EHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEI 536



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 152/311 (48%), Gaps = 25/311 (8%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +QV AH+  SG   S  + + LI L      I  A  +F  +P  +S   ++LL    + 
Sbjct: 108 QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 167

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 +   R M   G    ++T +++++ACA LSA   G+++H++++   C  G+D++
Sbjct: 168 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVM--VCGYGSDMY 225

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q++LI +Y K   +  A +VF+    R        ++ W S++  Y +NG  +E I L+
Sbjct: 226 VQAALIALYAKASDMKVAKKVFDAMPQRT-------IIAWNSLISGYDQNGLPQESIGLF 278

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
             M+ +G +PD    V+++S+CS  G +  G     W+ HDY    G +      + L++
Sbjct: 279 HLMMESGFQPDSATIVSLLSSCSQLGALDFGC----WL-HDYADGNGFDLNVVLGTSLIN 333

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELD 399
           +  R G + KA ++ + M +R     +V  W A++S    H  G+  +      +A    
Sbjct: 334 MYTRCGNVSKAREVFDSMKER-----NVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPR 388

Query: 400 PHNVGIYVMLS 410
           P+N+    +LS
Sbjct: 389 PNNITFVAVLS 399


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 217/400 (54%), Gaps = 15/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +  +I    + G    A+K F  M    +  + +   + ++   ++    +G
Sbjct: 230 MTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWG 289

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ AHV + G + S+ V ++++ +Y+K   +  A  +F  +  ++ +  + ++SGY + 
Sbjct: 290 EQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQG 349

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                  + +  M   G   + F  +++L  C  ++  E G+Q+HA+++  C  L  +  
Sbjct: 350 GCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVL--CVGLEQNTM 407

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +QS+LI MY KCG + +A ++F+      E E N ++V WT+M+  Y  +GY +E I L+
Sbjct: 408 VQSALINMYSKCGSIKEASKIFD------EAEYN-NIVSWTAMINGYAEHGYSQEAIDLF 460

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + +   G +PD V F+ V++ACSH G V LG  YF  +   +++ P  +HY C++DLLCR
Sbjct: 461 KKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCR 520

Query: 346 AGELDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           AG L+ A  +I  M   R        +W  LL AC   G  + GK AA+K L+LDP+   
Sbjct: 521 AGRLNDAESMIQSMPFQRDD-----VVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAV 575

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            ++ L+N+YA    W E  ++R++MK KG+ K+ G SWI+
Sbjct: 576 THITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIK 615



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 180/391 (46%), Gaps = 34/391 (8%)

Query: 34  KNL---GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDT 86
           KNL   G L N  +  +    R+ + +  +IS +    +   AL  FS M V  G+ +D 
Sbjct: 9   KNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDP 68

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           + L  +L A        FG+ +  +  K+ +++SVFVGSAL+D+Y K+  + +  ++F E
Sbjct: 69  FILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKE 128

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +P++N V   A+++G   A      L     M    +  D +T S+ L+ACA   A  +G
Sbjct: 129 MPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYG 188

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           R++H   ++K        F+ ++L  MY KCG +   L++F       E    +DVV WT
Sbjct: 189 REIHCQTLKK--GFTAVSFVANTLATMYNKCGKLDYGLRLF-------ESMTQRDVVSWT 239

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +++    + G  +  +K +  M      P+E  F  VIS C+  G+++ G +     +H 
Sbjct: 240 TIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQ-----LHA 294

Query: 327 YKLEPGPEHYSCLVDLLCRAGEL----DKAWKL-INEMLDRGHGSSSVSMWGALLS--AC 379
           + +  G      LVD L  A  +     K W+L +   + +G     +  W  ++S  A 
Sbjct: 295 HVIRRG------LVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQ 348

Query: 380 HDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
             CG+     L+  +     P+      +LS
Sbjct: 349 GGCGEEAFDYLSWMRREGPRPNEFAFASVLS 379



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 147/314 (46%), Gaps = 18/314 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +I+   R G    AL  FS M +  +  DTY   S+L A        +G+++
Sbjct: 132 RNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREI 191

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G+ +  FV + L  +Y K   +     +F+ +  ++ V    ++    +    
Sbjct: 192 HCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQE 251

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              ++  R M    +  + FT +A++  CA L   E+G Q+HA++IR+   L + + + +
Sbjct: 252 ENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRR--GLVDSLSVAN 309

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           S++ MY KC  +  A  VF       +G   +D++ W++M+  Y + G  +E       M
Sbjct: 310 SIMAMYSKCWQLDLASTVF-------QGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWM 362

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLC 344
              G +P+E AF +V+S C +   ++ G +     +H + L  G E      S L+++  
Sbjct: 363 RREGPRPNEFAFASVLSVCGNMAILEQGKQ-----LHAHVLCVGLEQNTMVQSALINMYS 417

Query: 345 RAGELDKAWKLINE 358
           + G + +A K+ +E
Sbjct: 418 KCGSIKEASKIFDE 431


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/414 (33%), Positives = 219/414 (52%), Gaps = 17/414 (4%)

Query: 37  GTLTNCLKFLNPRNPLPFNVVISDFCRNGSPL-YALKTFSF---MHVHGIFLDTYALCSS 92
           G++T   +   P  P P + +     +  S   +++ T  F   M   G     Y   S 
Sbjct: 73  GSITYARRLF-PTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSV 131

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           + A   +   R GK++ +HV   G+ S ++V +ALI LYAK   +  A+ +FD +P +  
Sbjct: 132 IKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTI 191

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           +  N+L+SGY +  L    + L  LM   G   D  T+ +LL +C+ L A +FG  +H Y
Sbjct: 192 IAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDY 251

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
                 +L  +V + +SLI MY +CG V+KA +VF+    R       +VV WT+M+  Y
Sbjct: 252 ADGNGFDL--NVVLGTSLINMYTRCGNVSKAREVFDSMKER-------NVVTWTAMISGY 302

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           G +GY ++ ++L+  M   G +P+ + FV V+SAC+H+G +  G   F  M   Y L PG
Sbjct: 303 GMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPG 362

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
            EH  C+VD+  RAG L+ A++ I + + +  G    ++W ++L AC     F+LG   A
Sbjct: 363 VEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGP---AVWTSMLGACRMHRNFDLGVKVA 419

Query: 393 QKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +  L ++P N G YVMLSN+YA     D +  +R +M  + LKK VG S IE+ 
Sbjct: 420 EHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEIN 473



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 152/311 (48%), Gaps = 25/311 (8%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +QV AH+  SG   S  + + LI L      I  A  +F  +P  +S   ++LL    + 
Sbjct: 44  QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 103

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 +   R M   G    ++T +++++ACA LSA   G+++H++++   C  G+D++
Sbjct: 104 GFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVM--VCGYGSDMY 161

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q++LI +Y K   +  A +VF+    R        ++ W S++  Y +NG  +E I L+
Sbjct: 162 VQAALIALYAKASDMKVAKKVFDAMPQRT-------IIAWNSLISGYDQNGLPQESIGLF 214

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
             M+ +G +PD    V+++S+CS  G +  G     W+ HDY    G +      + L++
Sbjct: 215 HLMMESGFQPDSATIVSLLSSCSQLGALDFGC----WL-HDYADGNGFDLNVVLGTSLIN 269

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELD 399
           +  R G + KA ++ + M +R     +V  W A++S    H  G+  +      +A    
Sbjct: 270 MYTRCGNVSKAREVFDSMKER-----NVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPR 324

Query: 400 PHNVGIYVMLS 410
           P+N+    +LS
Sbjct: 325 PNNITFVAVLS 335


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/397 (32%), Positives = 218/397 (54%), Gaps = 14/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +I+ + ++G     L++F  M +     D+      L+  + + D   G+ +
Sbjct: 386 KDSVTWNSLINGYTQSGYYKEGLESFKMMKMERK-PDSVTFVLLLSIFSQLADINQGRGI 444

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K G+ + + +G++L+D+YAK   + D   +F  +   + +  N +++        
Sbjct: 445 HCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDC 504

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             G +++  M   GL  D  T+  +L  C+ L+    G+++H Y+ +      ++V + +
Sbjct: 505 TVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS--GFESNVPIGN 562

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LIEMY KCG +   ++VF            KDVV WT+++  +G  G  K+ +K ++ M
Sbjct: 563 ALIEMYSKCGSLENCIKVFKYMKE-------KDVVTWTALISAFGMYGEGKKALKAFQDM 615

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            ++G  PD VAF+  I ACSH+G VK G+ +F+ M  DY LEP  EHY+C+VDLL R+G 
Sbjct: 616 ELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGL 675

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A + I  M  +       S+WGALLSAC   G   + +  ++K LEL+  + G YV+
Sbjct: 676 LAQAEEFILSMPMK----PDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVL 731

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +SN+YA    WD++  +R  MK KGLKK+ G SWIE+
Sbjct: 732 VSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEI 768



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 218/445 (48%), Gaps = 43/445 (9%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLP-FNVVIS 59
            VH+    +GL L   +IF  +L+  Y      K+  +  +  + ++P N +  +N +I 
Sbjct: 40  TVHSLIITSGLSLS--VIFSGKLISKYAQV---KDPISSVSVFRSISPTNNVYLWNSIIR 94

Query: 60  DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS 119
               NG    AL  ++ M    +  D +   S + +   + D   G  V  H  + G+ S
Sbjct: 95  ALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFES 154

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
            +++G+ALID+Y++ + + +A  +F+E+  ++SV  N+L+SGYC    W   L++     
Sbjct: 155 DLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFR 214

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
             G+  D FT+S++L AC  L A + G  VH  + +    +  DV + + L+ MY K   
Sbjct: 215 MTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEK--IGIAGDVIIGNGLLSMYFKFER 272

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           + +A +VF+           KD V W +M+  Y + G  +  +KL+  M+ +G  PD ++
Sbjct: 273 LREARRVFSKMAV-------KDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLS 324

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE--HYSC--LVDLLCRAGELDKAWKL 355
             + I AC  +G +++G       VH Y +  G E    +C  L+D+  + G+L  A   
Sbjct: 325 ITSTIRACGQSGDLQVG-----KFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAA--- 376

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD--PHNVGIYVMLSNLY 413
             E+ D      SV+ W +L++     G ++ G L + K ++++  P +V  +V+L +++
Sbjct: 377 -QEVFDTTKCKDSVT-WNSLINGYTQSGYYKEG-LESFKMMKMERKPDSV-TFVLLLSIF 432

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDV 438
           +         QL ++ + +G+  DV
Sbjct: 433 S---------QLADINQGRGIHCDV 448



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/253 (20%), Positives = 107/253 (42%), Gaps = 10/253 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I  + L+  Y  C     +  L     +++  + + +N VI+            +  + 
Sbjct: 457 LIIGNSLLDVYAKC---GEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINE 513

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D   +   L   + +   R GK++  ++ KSG+ S+V +G+ALI++Y+K   
Sbjct: 514 MRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGS 573

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + +   +F  +  K+ V   AL+S +         L+  + M   G+  D     A + A
Sbjct: 574 LENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFA 633

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+     + G +    M +   NL   +   + ++++  + GL+ +A +        L  
Sbjct: 634 CSHSGMVKEGLRFFDRM-KTDYNLEPRMEHYACVVDLLARSGLLAQAEEFI------LSM 686

Query: 257 EINKDVVLWTSML 269
            +  D  LW ++L
Sbjct: 687 PMKPDASLWGALL 699


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/404 (34%), Positives = 223/404 (55%), Gaps = 15/404 (3%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYALCSSLTASTSVKDA 102
           K   P N   +N +I  +   G+ + A+  +  M   G +  DT+     L A   + D 
Sbjct: 78  KIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADV 137

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G+ + + V +SG+ S ++V ++L+ LYA    +  A  +FD++P K+ V  N++++G+
Sbjct: 138 RLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGF 197

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            E       L L   M   G+  D FT+ +LL ACA + A   G++ H YMI+    L  
Sbjct: 198 AENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIK--VGLTR 255

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           ++   + L+++Y +CG V +A  +F+         ++K+ V WTS++     NG  KE I
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEM-------VDKNSVSWTSLIVGLAVNGLGKEAI 308

Query: 283 KLYEAM-LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           +L++ M    G  P E+ FV ++ ACSH G VK G EYF  M  +YK+EP  EH+ C+VD
Sbjct: 309 ELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVD 368

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           LL RAG++ KA++ I +M        +V +W  LL AC   G  +L +LA  K L+L+P+
Sbjct: 369 LLARAGQVKKAYEYILKM----PMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPN 424

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           + G YV+LSN+YA    W ++ ++R+ M   G++K  G S +EV
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEV 468


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 219/398 (55%), Gaps = 14/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS + +N  P  AL  +  M   G   D   + + ++A   +KD   G ++
Sbjct: 143 RNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKL 202

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +H+ +        +GSAL+++YAK   +  A  +FD++  K+    +AL+ GY +    
Sbjct: 203 HSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRS 262

Query: 169 AGGLELVR-LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              L+L R +     +  +  T+ A++ ACA L   E GR VH Y+ R     G+ V + 
Sbjct: 263 TEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITR--TQKGHSVSLN 320

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +SLI+M+ KCG +  A ++F+   +       KD++ W SM+     +G  +E +  +  
Sbjct: 321 NSLIDMFSKCGDIDAAKRIFDSMSY-------KDLISWNSMVNGLALHGLGREALAQFHL 373

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M     +PDE+ F+ V++ACSH G V+ G + F  +   Y +    EHY C+VDLLCRAG
Sbjct: 374 MQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAG 433

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L +A + I  M  +  G+    +WG++L AC      ELG+ AA+  LEL+P N G+Y+
Sbjct: 434 LLAEAREFIRVMPLQPDGA----IWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYI 489

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YA+  MW+E+ ++RELM EKG++K  GCS + +
Sbjct: 490 LLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVI 527



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 170/364 (46%), Gaps = 35/364 (9%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCSSLTASTSVKDARFGKQVQA 110
           L +N ++  F  +  P  AL++++ M      + D +   S L     + + + GK +  
Sbjct: 44  LTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHG 103

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            V K    S +++ + L+++YA    +  A  +F+ +  +N V   +++SGY +      
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM----IRKCCNLGNDVFM 226
            L L + M   G   D  T++ L+ ACA L     G ++H+++    ++ C  LG     
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLG----- 218

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY- 285
            S+L+ MY KCG +  A QVF+          +KDV  W++++  Y +N    E ++L+ 
Sbjct: 219 -SALVNMYAKCGDLKTARQVFDQLS-------DKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
           E    +  +P+EV  + VISAC+  G ++ G     W VHDY       H     + L+D
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETG----RW-VHDYITRTQKGHSVSLNNSLID 325

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELD 399
           +  + G++D A ++ + M         +  W ++++  A H  G+  L +    +  +L 
Sbjct: 326 MFSKCGDIDAAKRIFDSM-----SYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQ 380

Query: 400 PHNV 403
           P  +
Sbjct: 381 PDEI 384


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 231/434 (53%), Gaps = 49/434 (11%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ RN + + V+IS F + G    +++ F+ M    + LD +AL + ++   S  D   G
Sbjct: 331 LHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLG 390

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF--------------------- 144
           +Q+ +   KSG + +V V ++LI +YAK   +  AE +F                     
Sbjct: 391 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQV 450

Query: 145 ----------DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY---DHFTLS 191
                     D +  KN +  NA+L  Y +      GL + ++M  L  +Y   D  T  
Sbjct: 451 GNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVM--LSEEYVRPDWVTYV 508

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
            L + CA L A + G Q+    ++    L  D  + +++I MY KCG + +A +VF+   
Sbjct: 509 TLFKGCADLGANKLGDQIIGRTVK--VGLIIDTSVANAVITMYSKCGRILEARKVFDFLN 566

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
                   KD+V W +M+  Y ++G  K+ I++++ +L  G KPD +++V V+S CSH+G
Sbjct: 567 -------VKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 619

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            V+ G  YF+ M   + + PG EH+SC+VDLL RAG L +A  LI++M  +     +  +
Sbjct: 620 LVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMK----PTAEV 675

Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           WGALLSAC   G  EL +LAA+   ELD  + G Y++++ +YA     D+  Q+R+LM++
Sbjct: 676 WGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRD 735

Query: 432 KGLKKDVGCSWIEV 445
           KG+KK+ G SW+EV
Sbjct: 736 KGIKKNPGYSWMEV 749



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 143/295 (48%), Gaps = 31/295 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N+++S   ++G    AL     M   G+ LD+    SSLTA   +   R+GKQ+
Sbjct: 233 RDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQL 292

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V ++      +V SAL++LYAK     +A+ +F+ +  +N+V    L+SG+ +   +
Sbjct: 293 HAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCF 352

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFM 226
              +EL   M A  +  D F L+ L+  C        GRQ+H+     C   G    V +
Sbjct: 353 TESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSL----CLKSGQIQAVVV 408

Query: 227 QSSLIEMYGKC----------------------GLVTKALQVFNLAGHR--LEGEINKDV 262
            +SLI MY KC                       ++T   QV N+A  R   +G   K+V
Sbjct: 409 SNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV 468

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLG 316
           + W +MLG Y ++G  ++ +++Y+ ML     +PD V +VT+   C+  G  KLG
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLG 523



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 137/307 (44%), Gaps = 44/307 (14%)

Query: 36  LGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYALCS 91
           LG L++ ++    +  R+   +N ++S + ++   L +L+TF  MH  G  + + + L  
Sbjct: 84  LGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLAC 143

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           ++ +  ++       Q+ A V K        V +AL+D++ +   +  A  +F  I    
Sbjct: 144 AMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPT 203

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMP-------------------------------A 180
             C N++L+GY +       LEL   MP                               +
Sbjct: 204 MFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQS 263

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  D  T ++ L ACA LS+  +G+Q+HA +IR   ++  D ++ S+L+E+Y K G  
Sbjct: 264 KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHI--DPYVASALVELYAKSGCF 321

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +A  VFN    R       + V WT ++  + + G F E ++L+  M       D+ A 
Sbjct: 322 KEAKGVFNSLHDR-------NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFAL 374

Query: 301 VTVISAC 307
            T+IS C
Sbjct: 375 ATLISGC 381



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 132/285 (46%), Gaps = 28/285 (9%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           +V   + +++ YAKL  + DA  +F  +P ++    N L+SGY +++ +   LE    M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 180 ALGLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
             G  + + FTL+  +++C  L       Q+ A M++K  +  +D  + ++L++M+ +CG
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLA-MVQK-FDSQDDSEVAAALVDMFVRCG 187

Query: 239 LVTKALQVF-------------NLAG--------HRLE---GEINKDVVLWTSMLGVYGR 274
            V  A ++F              LAG        H LE       +DVV W  M+    +
Sbjct: 188 AVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQ 247

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +G  +E + +   M   G + D   + + ++AC+    ++ G +    ++ +      P 
Sbjct: 248 SGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP-HIDPY 306

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
             S LV+L  ++G   +A  + N + DR + + +V + G L   C
Sbjct: 307 VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGC 351



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 29/188 (15%)

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF------ 247
           LR+C    A    R +H  ++     L + VF+Q++L+  Y  CG ++ A ++       
Sbjct: 11  LRSCGARGALAGARALHGRLV--AVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAH 68

Query: 248 -NLAGH-----------RLEGEIN-------KDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            N+  H           RL   +        +DV  W +++  Y ++  +   ++ + +M
Sbjct: 69  PNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSM 128

Query: 289 LMNGTK-PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
             +G   P+       + +C   G   L ++    MV  +  +   E  + LVD+  R G
Sbjct: 129 HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLA-MVQKFDSQDDSEVAAALVDMFVRCG 187

Query: 348 ELDKAWKL 355
            +D A +L
Sbjct: 188 AVDLASRL 195


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/434 (33%), Positives = 230/434 (52%), Gaps = 50/434 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG--IFLDTYALCSSLTASTSVKDARFGK 106
           R+ + +N +I  + R+G P  AL+ F  +   G  +  D   +  +++    + D   GK
Sbjct: 185 RDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGK 244

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLY-------------------------------AKLL 135
           ++   V   G   +V + +A++D+Y                               A+L 
Sbjct: 245 RLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLG 304

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
           ++ DA ++FDE+P ++    NAL++GY + K     + L   M    +D +  T+  LL 
Sbjct: 305 MMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLS 364

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC+ L A E G  VH Y+ R   +L   V + +SL++MY KCG + KA+ VFN       
Sbjct: 365 ACSQLGALEMGMWVHHYIDRHKLHLS--VALGTSLVDMYAKCGNIKKAICVFN------- 415

Query: 256 GEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
            EI  ++ + WTSM+     +G+  E I+ ++ M+  G +PDE+ F+ V+SAC H G V+
Sbjct: 416 -EIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVE 474

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM-LDRGHGSSSVSMWG 373
            G ++F  M   Y LE   +HYSC++DLL RAG LD+A +L+N M +D         +WG
Sbjct: 475 AGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMD-----PDAVVWG 529

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           AL  AC   G   LG+ AA K +ELDP + GIYV+L+N+YA+  M  +  ++R +M+  G
Sbjct: 530 ALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLG 589

Query: 434 LKKDVGCSWIEVTG 447
           ++K  GCS IE+ G
Sbjct: 590 VEKVPGCSCIELNG 603



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 150/347 (43%), Gaps = 42/347 (12%)

Query: 48  PRNPLPFNVVISDFC---------RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTS 98
           P +  P+N                R+  PLY     + +H      D       + A   
Sbjct: 78  PDSAFPYNAAFRALSLCPHQHLVDRHCLPLYR----ALLHSGSARPDHLTFPFLIKACAR 133

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           ++   +G  V  HV K G+ + VFV +A +  ++    +  A  +FDE PV++ V  N L
Sbjct: 134 LQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTL 193

Query: 159 LSGYCEAKLWAGGLELVRLMPALG--LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           + GY  + L    LEL   +   G  +  D  T+   +  CA +   E G+++H ++  K
Sbjct: 194 IGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNK 253

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI----- 258
              +   V + +++++MY KCG +  A  VF              + GH   G +     
Sbjct: 254 --GVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARM 311

Query: 259 ------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
                  +DV  W +++  Y +N   KE I L+  M  +   P+E+  V ++SACS  G 
Sbjct: 312 LFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGA 371

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           +++G+ +    +  +KL       + LVD+  + G + KA  + NE+
Sbjct: 372 LEMGM-WVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEI 417



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 23/251 (9%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           DH T   L++ACA L    +G  V  ++ +       DVF+ ++ +  +   G +  A +
Sbjct: 120 DHLTFPFLIKACARLQYRSYGAAVLGHVQK--LGFSADVFVVNAAMHFWSVRGPMAFARR 177

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT--KPDEVAFVTV 303
           +F+      E  + +DVV W +++G Y R+G  +E ++L+  +  +G   +PDEV  +  
Sbjct: 178 LFD------ESPV-RDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGA 230

Query: 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
           +S C+  G ++LG    E+ V +  +       + ++D+  + G L+    L N + +R 
Sbjct: 231 VSGCAQMGDLELGKRLHEF-VDNKGVRCTVRLMNAVMDMYVKCGSLE----LANSVFERI 285

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD--PHNVGIYVMLSNLYAKFCMWDE 421
              ++VS W  ++      G  E  ++   +  E D  P N  +   + N   K    + 
Sbjct: 286 SNRTAVS-WTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGK----EA 340

Query: 422 IGQLRELMKEK 432
           I    E+ K K
Sbjct: 341 IALFHEMQKSK 351


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/399 (33%), Positives = 221/399 (55%), Gaps = 15/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +IS    N  P  AL+T+  M + G   D   + S L+A  S+     G ++
Sbjct: 300 RDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKL 359

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                ++G +  V V ++LID+Y+K   I  A  +F +IP K+ +   ++++G       
Sbjct: 360 HELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRC 419

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L   R M  L    +  TL + L ACA + A   G+++HA+ ++    +G D F+ +
Sbjct: 420 FEALIFFRKM-ILKSKPNSVTLISALSACARVGALMCGKEIHAHALK--AGMGFDGFLPN 476

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +++++Y +CG +  AL  FNL          KDV  W  +L  Y + G    V++L++ M
Sbjct: 477 AILDLYVRCGRMRTALNQFNLN--------EKDVGAWNILLTGYAQKGKGAMVMELFKRM 528

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           + +   PD+V F++++ ACS +G V  G+EYF+ M  +Y + P  +HY+C+VDLL RAG+
Sbjct: 529 VESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGK 588

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A    +E ++R       ++WGALL+AC       LG+LAAQ   + D  ++G Y++
Sbjct: 589 LNEA----HEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYIL 644

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           L NLYA    WDE+ ++R  MKE+GL  D GCSW+EV G
Sbjct: 645 LCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKG 683



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 170/332 (51%), Gaps = 18/332 (5%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           ++G   N    +  R+   +NV++  + + G    AL  +  +   GI  D Y   S L 
Sbjct: 84  DVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLR 143

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           +     D   G++V AHV +  +   V V +ALI +Y K   +  A ++FD++P ++ + 
Sbjct: 144 SCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRIS 203

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            NA++SGY E      GLEL   M  L +D D  T+++++ AC  L     G Q+H+Y++
Sbjct: 204 WNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVV 263

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           R   + GN + + +SLI+MY   G   +A  VF+       G   +DVV WT+++     
Sbjct: 264 RTAYD-GN-ISVYNSLIQMYLSVGHWKEAESVFS-------GMECRDVVSWTTIISGCVD 314

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           N    + ++ Y+ M + GT PDEV   +V+SAC+  GQ+ +G++     +H+     G  
Sbjct: 315 NLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMK-----LHELAERTGHI 369

Query: 335 HY----SCLVDLLCRAGELDKAWKLINEMLDR 362
            Y    + L+D+  +   ++KA ++ +++ D+
Sbjct: 370 LYVVVANSLIDMYSKCKRIEKALEIFHQIPDK 401



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 22/280 (7%)

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           L SV +G+AL+ ++ +   + +A  +F  +  ++    N L+ GY +A  +   L L   
Sbjct: 66  LLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHR 125

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           +   G+  D +T  ++LR+CAG      GR+VHA+++R   +   DV + ++LI MY KC
Sbjct: 126 ILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVR--FDFDMDVDVVNALITMYVKC 183

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G V  A  +F+    R       D + W +M+  Y  N    E ++L+  M      PD 
Sbjct: 184 GDVVSARMLFDKMPTR-------DRISWNAMISGYFENDECLEGLELFFRMRELSIDPDL 236

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           +   +VISAC   G  +LG +   ++V     +     Y+ L+ +    G   +A  + +
Sbjct: 237 MTMTSVISACELLGDERLGTQLHSYVVRT-AYDGNISVYNSLIQMYLSVGHWKEAESVFS 295

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397
            M  R      V  W  ++S C D        L   KALE
Sbjct: 296 GMECR-----DVVSWTTIISGCVD-------NLLPDKALE 323


>gi|15223858|ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77170
 gi|332197823|gb|AEE35944.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 467

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/398 (32%), Positives = 212/398 (53%), Gaps = 13/398 (3%)

Query: 51  PLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           P+ F  N ++  + R+ SPL A++ +  M    +  D Y+L   + A+  + D   GK++
Sbjct: 80  PIAFLWNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKEL 139

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +   + G++   F  S  I LY K     +A  +FDE P +     NA++ G   A   
Sbjct: 140 HSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRA 199

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +E+   M   GL+ D FT+ ++  +C GL       Q+H  +++      +D+ M +
Sbjct: 200 NEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLN 259

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MYGKCG +       +LA H  E    ++VV W+SM+  Y  NG   E ++ +  M
Sbjct: 260 SLIDMYGKCGRM-------DLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQM 312

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G +P+++ FV V+SAC H G V+ G  YF  M  +++LEPG  HY C+VDLL R G+
Sbjct: 313 REFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQ 372

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A K++ EM  +     +V +WG L+  C   G  E+ +  A   +EL+P N G+YV+
Sbjct: 373 LKEAKKVVEEMPMK----PNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVV 428

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           L+N+YA   MW ++ ++R+LMK K + K    S+   T
Sbjct: 429 LANVYALRGMWKDVERVRKLMKTKKVAKIPAYSYASTT 466


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 226/430 (52%), Gaps = 22/430 (5%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFS 75
            ++R++L +  C      G + +  +  +    +N L +N +I      G    A + F 
Sbjct: 168 LRNRVLLMHVKC------GMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFL 221

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            M        +    + + AS  +     G+Q+ +   K+G    VFV  ALID+Y+K  
Sbjct: 222 MMWQXFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCG 281

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
            I DA+ +FD++P K +V  N++++GY         L +   M   G+  D+FT S ++R
Sbjct: 282 SIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIR 341

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
            CA L++ E  +Q HA ++R     G D+   ++L+++Y K G +  A  VF++  H   
Sbjct: 342 ICARLASLEHAKQAHAGLVRH--GFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPH--- 396

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
               K+V+ W +++  YG +G   E ++++E ML  G  P+ V F+ V+SACS++G    
Sbjct: 397 ----KNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDR 452

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G E FE M  D+K++P   HY+C+++LL R G LD+A+ LI +         +V+MW AL
Sbjct: 453 GWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKD----APFKPTVNMWAAL 508

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L+AC     FELGK AA+K   + P  +  YV+L N+Y      +E   + + +K +GL+
Sbjct: 509 LTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLR 568

Query: 436 KDVGCSWIEV 445
               CSWIE+
Sbjct: 569 MLPACSWIEI 578



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 18/317 (5%)

Query: 70  ALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
           AL+ F  + ++G + +D+    + ++A   +K  R  K+V  ++  SG     ++ + ++
Sbjct: 114 ALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVL 173

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
            ++ K  ++ DA  +FDE+P KN +  N ++ G  +A  +     L  +M     D    
Sbjct: 174 LMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSR 233

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
               ++RA AGL     GRQ+H+  ++    +G DVF+  +LI+MY KCG +  A  VF+
Sbjct: 234 MFVTMIRASAGLGLIFAGRQLHSCSLK--TGVGGDVFVACALIDMYSKCGSIEDAQCVFD 291

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                      K  V W S++  Y  +GY +E + +Y  M  +G K D   F  +I  C+
Sbjct: 292 QMP-------EKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICA 344

Query: 309 HTGQVKLGIEYFEWMV-HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
               ++   +    +V H + L+      + LVDL  + G ++ A  + + M  +     
Sbjct: 345 RLASLEHAKQAHAGLVRHGFGLDIVAN--TALVDLYSKWGRIEDAKHVFDMMPHK----- 397

Query: 368 SVSMWGALLSACHDCGK 384
           +V  W AL++   + G+
Sbjct: 398 NVISWNALIAGYGNHGR 414


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 220/409 (53%), Gaps = 13/409 (3%)

Query: 38  TLTNCLKFLNPR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAS 96
           + T  L F  P+ +   F+ +I+   +   P  +L  +  M +  I    Y   + + +S
Sbjct: 69  SYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSS 128

Query: 97  TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
             +     G+ +  HV   G+    +V +AL+  YAK   +  A  +FD++P K  V  N
Sbjct: 129 ADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWN 188

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           +++SGY +       +EL  LM  LG+  D  T  +LL ACA + A   G  VH Y+ R 
Sbjct: 189 SMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARN 248

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
           C +L  +V + ++L+ MY +CG V+KA +VF+     +E    K++V WT+M+  YG +G
Sbjct: 249 CFDL--NVVLGTALMNMYSRCGNVSKAREVFD----SME---EKNIVAWTAMISGYGMHG 299

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
           +  + I+L+  M  +G +P+ V FV V+SAC+H G V  G + F  M  +Y L P  EH 
Sbjct: 300 HGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQ 359

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
            C+VD+L RAG L++A++ I     +     + ++W A+L AC     F+LG   A+  L
Sbjct: 360 VCMVDMLGRAGHLNEAYQFIKNTSPK---EPAPAVWTAMLGACKMHKNFDLGVEVAEHLL 416

Query: 397 ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            ++P N G YVMLSN+YA     D + ++R +M    LKK+VG S I+V
Sbjct: 417 SIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDV 465


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/397 (34%), Positives = 219/397 (55%), Gaps = 13/397 (3%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N   +N +I  +  + SP+ A+  +  M + GI  ++Y     L A   +     G+++ 
Sbjct: 71  NLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELH 130

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           + + K G      + + LI LYA    +  A +MFDE+P  +S   + ++SGY +     
Sbjct: 131 SQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAV 190

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             L+L R M A  +  D FTL++++  C  L A + G+ VH+YM ++   +  DV + ++
Sbjct: 191 EALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKI--DVVLGTA 248

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L+ MY KCG +  AL+VF       +G   +DV  W++M+  Y  +G+ ++ ++L++AM 
Sbjct: 249 LVGMYSKCGSLDNALKVF-------QGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMK 301

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
            + T P+ V F +V+SACSH+G V+ G + FE M  +YK+ P  +HY C+VDL CRAG +
Sbjct: 302 RSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMV 361

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
             A K I  M        +V +W  LL AC   G  +LG+  ++K L+LDP +   YV++
Sbjct: 362 GHAHKFIQTMPIE----PNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLV 417

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           SN+YA    W  + Q+R LMK+K  KK  G S IE+ 
Sbjct: 418 SNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEIN 454


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/393 (33%), Positives = 215/393 (54%), Gaps = 19/393 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHV-HGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +  V+S F +N     AL  F  MH   G+  D     + LTA  +++  + GK++   +
Sbjct: 232 WTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKL 291

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
             +G  S+V V S+L+D+Y K   + +A  +F+ +  KNSV  +ALL GYC+       +
Sbjct: 292 ITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAI 351

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           E+ R M     + D +    +L+ACAGL+A   G+++H   +R+ C  GN V ++S+LI+
Sbjct: 352 EIFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGC-FGN-VIVESALID 405

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           +YGK G +  A +V++    R       +++ W +ML    +NG  +E +  +  M+  G
Sbjct: 406 LYGKSGCIDSASRVYSKMSIR-------NMITWNAMLSALAQNGRGEEAVSFFNDMVKKG 458

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            KPD ++F+ +++AC HTG V  G  YF  M   Y ++PG EHYSC++DLL RAG  ++A
Sbjct: 459 IKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEA 518

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSAC-HDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
             L    L+R    +  S+WG LL  C  +     + +  A++ +EL+P     YV+LSN
Sbjct: 519 ENL----LERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSN 574

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +Y       +   +R+LM  +G+ K VG SWI+
Sbjct: 575 MYKAIGRHGDALNIRKLMVRRGVAKTVGQSWID 607



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 170/343 (49%), Gaps = 28/343 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  ++S +      + AL+ F  M   G+  + + L S++ A + + + R G+  
Sbjct: 126 KDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCF 185

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V   G+  + F+ S L  LY       DA  +FDE+P  + +C  A+LS + +  L+
Sbjct: 186 HGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLY 245

Query: 169 AGGLELVRLM-PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              L L   M    GL  D  T   +L AC  L   + G+++H  +I     +G++V ++
Sbjct: 246 EEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN--GIGSNVVVE 303

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           SSL++MYGKCG V +A QVFN       G   K+ V W+++LG Y +NG  ++ I+++  
Sbjct: 304 SSLLDMYGKCGSVREARQVFN-------GMSKKNSVSWSALLGGYCQNGEHEKAIEIFRE 356

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLL 343
           M     + D   F TV+ AC+    V+LG E     +H   +  G        S L+DL 
Sbjct: 357 M----EEKDLYCFGTVLKACAGLAAVRLGKE-----IHGQYVRRGCFGNVIVESALIDLY 407

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            ++G +D A ++ ++M  R     ++  W A+LSA    G+ E
Sbjct: 408 GKSGCIDSASRVYSKMSIR-----NMITWNAMLSALAQNGRGE 445



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 154/331 (46%), Gaps = 17/331 (5%)

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I + C+ G    A++  +  H   I        S L     V     G Q  AHV KSG 
Sbjct: 33  ILELCKLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGL 92

Query: 118 LSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
            +   VG++L+ LY KL   + +   +FD   VK+++   +++SGY   K     LE+  
Sbjct: 93  ETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFV 152

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M + GLD + FTLS+ ++AC+ L     GR  H  +I       +  F+ S+L  +YG 
Sbjct: 153 EMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNH--FISSTLAYLYGV 210

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKP 295
                 A +VF+            DV+ WT++L  + +N  ++E + L+ AM    G  P
Sbjct: 211 NREPVDARRVFDEMPE-------PDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVP 263

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           D   F TV++AC +  ++K G E    ++ +  +       S L+D+  + G + +A ++
Sbjct: 264 DGSTFGTVLTACGNLRRLKQGKEIHGKLITN-GIGSNVVVESSLLDMYGKCGSVREARQV 322

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            N M  +    +SVS W ALL      G+ E
Sbjct: 323 FNGMSKK----NSVS-WSALLGGYCQNGEHE 348



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 14/254 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++ +S L+  Y  C   +    + N +   + +N + ++ ++  +C+NG    A++ F  
Sbjct: 300 VVVESSLLDMYGKCGSVREARQVFNGM---SKKNSVSWSALLGGYCQNGEHEKAIEIFRE 356

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M       D Y   + L A   +   R GK++     + G   +V V SALIDLY K   
Sbjct: 357 MEEK----DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGC 412

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I  A  ++ ++ ++N +  NA+LS   +       +     M   G+  D+ +  A+L A
Sbjct: 413 IDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTA 472

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C      + GR     M  K   +       S +I++ G+ GL  +A  +   A      
Sbjct: 473 CGHTGMVDEGRNYFVLMA-KSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERA------ 525

Query: 257 EINKDVVLWTSMLG 270
           E   D  LW  +LG
Sbjct: 526 ECRNDASLWGVLLG 539


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 232/434 (53%), Gaps = 43/434 (9%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYALCSSLTASTSVKDARF 104
           +  R+ + +NV+IS + R      A+ TF  M   G    D   + S+L+A T++K+   
Sbjct: 258 MTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLEL 317

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC- 163
           G ++  +V K    ++  + +AL+D+YAK   ++ A  +FDE+ +KN +C  +++SGY  
Sbjct: 318 GDEIHNYVRKELGFTTR-IDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYIN 376

Query: 164 -----EAK------------LWAG-------------GLELVRLMPALGLDYDHFTLSAL 193
                EA+            LW                + L R M    +  D FT+  L
Sbjct: 377 CGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTL 436

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L  CA L A E G+ +H Y+      +  DV + ++LIEMY KCG V K+L++F    + 
Sbjct: 437 LTGCAQLGALEQGKWIHGYLDEN--RITMDVVVGTALIEMYSKCGCVDKSLEIF----YE 490

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
           LE   +KD   WTS++     NG   E ++L+  M   G KPD++ F+ V+SACSH G V
Sbjct: 491 LE---DKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLV 547

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  +F  M   +++EP  EHY C++DLL RAG LD+A +LI E +   +    V ++G
Sbjct: 548 EEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQE-IPIENCEIVVPLYG 606

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALLSAC      ++G+  A+K   ++  +  I+ +L+N+YA    W++  ++R  MKE G
Sbjct: 607 ALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELG 666

Query: 434 LKKDVGCSWIEVTG 447
           +KK  GCS IEV G
Sbjct: 667 VKKMPGCSLIEVDG 680



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 176/360 (48%), Gaps = 32/360 (8%)

Query: 35  NLGTLTNCLKFLN-PRNP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           +LG L    K  N  ++P    +NV++  + + G     L  F  +   G++ D +    
Sbjct: 143 SLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPF 202

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L A   ++D R G++V+  + K+G     +V ++LID+Y +L  + +A+ +FDE+  ++
Sbjct: 203 VLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRD 262

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDY-DHFTLSALLRACAGLSAAEFGRQVH 210
           SV  N ++SGY   + +   +   R M   G +  D  T+ + L AC  L   E G ++H
Sbjct: 263 SVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIH 322

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR--------LEGEIN--- 259
            Y +RK   LG    + ++L++MY KCG +  A  +F+    +        + G IN   
Sbjct: 323 NY-VRK--ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGD 379

Query: 260 -------------KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
                        +DVVLWT+M+  Y +  +F + + L+  M +   KPD+   VT+++ 
Sbjct: 380 LREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTG 439

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
           C+  G ++ G ++    + + ++       + L+++  + G +DK+ ++  E+ D+   S
Sbjct: 440 CAQLGALEQG-KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTAS 498



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 152/355 (42%), Gaps = 57/355 (16%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           DT     +  A +S+ + R+ +++  +V       S+FV + ++ +YAK  ++    L+F
Sbjct: 130 DTINKLMAFCADSSLGNLRYAEKIFNYVQDP----SLFVYNVMVKIYAKRGILRKVLLLF 185

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
            ++                E  LW  G                FT   +L+A   L    
Sbjct: 186 QQLR---------------EDGLWPDG----------------FTYPFVLKAIGCLRDVR 214

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G +V  ++++   +L N V+  +SLI+MY +   V  A ++F+    R       D V 
Sbjct: 215 QGEKVRGFIVKTGMDLDNYVY--NSLIDMYYELSNVENAKKLFDEMTTR-------DSVS 265

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
           W  M+  Y R   F++ I  +  M   G  KPDE   V+ +SAC+    ++LG E   ++
Sbjct: 266 WNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYV 325

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
             +       ++   L+D+  + G L+ A  + +EM        +V  W +++S   +CG
Sbjct: 326 RKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEM-----SMKNVICWTSMISGYINCG 378

Query: 384 KFELGKLAAQKALELDP-HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
                   A+   +  P  +V ++  + N Y +F  +D+   L   M+ + +K D
Sbjct: 379 DLR----EARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPD 429


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 231/434 (53%), Gaps = 49/434 (11%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ RN + + V+IS F + G    +++ F+ M    + LD +AL + ++   S  D   G
Sbjct: 351 LHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLG 410

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF--------------------- 144
           +Q+ +   KSG + +V V ++LI +YAK   +  AE +F                     
Sbjct: 411 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQV 470

Query: 145 ----------DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY---DHFTLS 191
                     D +  KN +  NA+L  Y +      GL + ++M  L  +Y   D  T  
Sbjct: 471 GNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVM--LSEEYVRPDWVTYV 528

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
            L + CA L A + G Q+    ++    L  D  + +++I MY KCG + +A +VF+   
Sbjct: 529 TLFKGCADLGANKLGDQIIGRTVK--VGLIIDTSVANAVITMYSKCGRILEARKVFDFLN 586

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
                   KD+V W +M+  Y ++G  K+ I++++ +L  G KPD +++V V+S CSH+G
Sbjct: 587 -------VKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 639

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            V+ G  YF+ M   + + PG EH+SC+VDLL RAG L +A  LI++M  +     +  +
Sbjct: 640 LVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMK----PTAEV 695

Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           WGALLSAC   G  EL +LAA+   ELD  + G Y++++ +YA     D+  Q+R+LM++
Sbjct: 696 WGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRD 755

Query: 432 KGLKKDVGCSWIEV 445
           KG+KK+ G SW+EV
Sbjct: 756 KGIKKNPGYSWMEV 769



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 143/295 (48%), Gaps = 31/295 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N+++S   ++G    AL     M   G+ LD+    SSLTA   +   R+GKQ+
Sbjct: 253 RDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQL 312

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V ++      +V SAL++LYAK     +A+ +F+ +  +N+V    L+SG+ +   +
Sbjct: 313 HAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCF 372

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFM 226
              +EL   M A  +  D F L+ L+  C        GRQ+H+     C   G    V +
Sbjct: 373 TESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSL----CLKSGQIQAVVV 428

Query: 227 QSSLIEMYGKC----------------------GLVTKALQVFNLAGHR--LEGEINKDV 262
            +SLI MY KC                       ++T   QV N+A  R   +G   K+V
Sbjct: 429 SNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV 488

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLG 316
           + W +MLG Y ++G  ++ +++Y+ ML     +PD V +VT+   C+  G  KLG
Sbjct: 489 ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLG 543



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 137/307 (44%), Gaps = 44/307 (14%)

Query: 36  LGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYALCS 91
           LG L++ ++    +  R+   +N ++S + ++   L +L+TF  MH  G  + + + L  
Sbjct: 104 LGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLAC 163

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           ++ +  ++       Q+ A V K        V +AL+D++ +   +  A  +F  I    
Sbjct: 164 AMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPT 223

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMP-------------------------------A 180
             C N++L+GY +       LEL   MP                               +
Sbjct: 224 MFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQS 283

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  D  T ++ L ACA LS+  +G+Q+HA +IR   ++  D ++ S+L+E+Y K G  
Sbjct: 284 KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHI--DPYVASALVELYAKSGCF 341

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +A  VFN    R       + V WT ++  + + G F E ++L+  M       D+ A 
Sbjct: 342 KEAKGVFNSLHDR-------NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFAL 394

Query: 301 VTVISAC 307
            T+IS C
Sbjct: 395 ATLISGC 401



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 132/285 (46%), Gaps = 28/285 (9%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           +V   + +++ YAKL  + DA  +F  +P ++    N L+SGY +++ +   LE    M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 180 ALGLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
             G  + + FTL+  +++C  L       Q+ A M++K  +  +D  + ++L++M+ +CG
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLA-MVQK-FDSQDDSEVAAALVDMFVRCG 207

Query: 239 LVTKALQVF-------------NLAG--------HRLE---GEINKDVVLWTSMLGVYGR 274
            V  A ++F              LAG        H LE       +DVV W  M+    +
Sbjct: 208 AVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQ 267

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +G  +E + +   M   G + D   + + ++AC+    ++ G +    ++ +      P 
Sbjct: 268 SGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP-HIDPY 326

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
             S LV+L  ++G   +A  + N + DR + + +V + G L   C
Sbjct: 327 VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGC 371



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 29/188 (15%)

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF------ 247
           LR+C    A    R +H  ++     L + VF+Q++L+  Y  CG ++ A ++       
Sbjct: 31  LRSCGARGALAGARALHGRLV--AVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAH 88

Query: 248 -NLAGH-----------RLEGEIN-------KDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            N+  H           RL   +        +DV  W +++  Y ++  +   ++ + +M
Sbjct: 89  PNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSM 148

Query: 289 LMNGTK-PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
             +G   P+       + +C   G   L ++    MV  +  +   E  + LVD+  R G
Sbjct: 149 HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLA-MVQKFDSQDDSEVAAALVDMFVRCG 207

Query: 348 ELDKAWKL 355
            +D A +L
Sbjct: 208 AVDLASRL 215


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/401 (35%), Positives = 219/401 (54%), Gaps = 16/401 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++  + ++     AL+ +  M V G+ +D + L S LTA T+V+D   G Q 
Sbjct: 203 RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLL-LIHDAELMFDEIPVKNSVCANALLSGYC-EAK 166
            A + KSG+  +  VGS LIDLY+K    + D   +FDEI   + V  N ++SGY     
Sbjct: 263 HAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYED 322

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L    LE  R +  +G   D  +L  ++ AC+ +S+   GRQVH   + K     N + +
Sbjct: 323 LSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLAL-KLDIPSNRISV 381

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++LI MY KCG +  A  +F+            + V + SM+  Y ++G   + + L++
Sbjct: 382 NNALIAMYSKCGNLRDAKTLFDTMP-------EHNTVSYNSMIAGYAQHGMGFQSLHLFQ 434

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML  G  P  + F++V++AC+HTG+V+ G  YF  M   + +EP   H+SC++DLL RA
Sbjct: 435 RMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRA 494

Query: 347 GELDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           G+L +A +LI  +  D G        W ALL AC   G  EL   AA + L+LDP N   
Sbjct: 495 GKLSEAERLIETIPFDPG-----FFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP 549

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           YVML+N+Y+      +   +R+LM+++G+KK  GCSWIEV 
Sbjct: 550 YVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVN 590



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 171/376 (45%), Gaps = 48/376 (12%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           + + +N +I+ + R G    A + F  M    + +D + L   +TA     +    +Q+ 
Sbjct: 104 DSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGI--NVGLIRQLH 161

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV-KNSVCANALLSGYCEAKLW 168
           A    +G  S V VG+ALI  Y+K   + +A  +F  +   ++ V  N+++  Y + +  
Sbjct: 162 ALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREG 221

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
           +  LEL   M   GL  D FTL+++L A   +     G Q HA +I+   +  + V   S
Sbjct: 222 SKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHV--GS 279

Query: 229 SLIEMYGKC-GLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYG-RNGYFKEVIKLY 285
            LI++Y KC G +    +VF+        EI N D+VLW +M+  Y        E ++ +
Sbjct: 280 GLIDLYSKCGGCMLDCRKVFD--------EISNPDLVLWNTMISGYSLYEDLSDEALECF 331

Query: 286 EAMLMNGTKPDEVAFVTVISACS-----------HTGQVKLGIEYFEWMVH--------- 325
             + + G +PD+ + V VISACS           H   +KL I      V+         
Sbjct: 332 RQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSK 391

Query: 326 -----DYK--LEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
                D K   +  PEH    Y+ ++    + G   ++  L   ML+ G   ++++ + +
Sbjct: 392 CGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNIT-FIS 450

Query: 375 LLSACHDCGKFELGKL 390
           +L+AC   G+ E GK+
Sbjct: 451 VLAACAHTGRVEDGKI 466



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 122/266 (45%), Gaps = 27/266 (10%)

Query: 63  RNGSPLYALKTFSFM----HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           R G  L+AL   SF+    ++   FL  Y+ C  L+A+  V D                 
Sbjct: 25  RTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHD------------- 71

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
            +VF  + LI  YAK   +  A  +FDE+P  +SV  N L++ Y          +L   M
Sbjct: 72  CNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEM 131

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
               LD D FTLS ++ AC G++     RQ+HA  +     L + V + ++LI  Y K G
Sbjct: 132 REAFLDMDGFTLSGIITAC-GINVG-LIRQLHALSV--VTGLDSYVSVGNALITSYSKNG 187

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            + +A ++F+          ++D V W SM+  Y ++    + ++LY  M + G   D  
Sbjct: 188 FLKEARRIFHWLSE------DRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIF 241

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMV 324
              +V++A ++   +  G+++   ++
Sbjct: 242 TLASVLTAFTNVQDLLGGLQFHAKLI 267


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/401 (32%), Positives = 211/401 (52%), Gaps = 14/401 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCSSLTASTSVKDARF 104
           +  R+   +  + S + R+     AL+ F  M  H  F  + + + S+L AS +++    
Sbjct: 181 MTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHL 240

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK++  H+ + G      V SAL D+Y K   I +A  +FD+   ++ V   A++  Y +
Sbjct: 241 GKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFK 300

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                 G  L   +   G+  + FT S +L ACA  +A E G+QVH YM R         
Sbjct: 301 EGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTR--IGFDPSS 358

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F  S+L+ MY KCG +  A +VFN       G    D+V WTS++  Y +NG   E ++ 
Sbjct: 359 FAASTLVHMYTKCGNIKNARRVFN-------GMPRPDLVSWTSLISGYAQNGQPDEALQF 411

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +E +L +GT+PD + FV V+SAC+H G V  G+EYF+ +   + L    +HY+CL+DLL 
Sbjct: 412 FELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLS 471

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           R+G L +A  +I++M           +W +LL  C   G  +L K AA+   E++P N  
Sbjct: 472 RSGRLQEAEDIIDKMPI----EPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPA 527

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            Y  L+N+YA   +W  + ++R++M  +G+ K  G SWIE+
Sbjct: 528 TYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIEI 568



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 145/312 (46%), Gaps = 47/312 (15%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G +V AH   SG++  V + + ++D+Y K   + +A+ +FDE+  ++    N ++SGY +
Sbjct: 108 GMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAK 167

Query: 165 A-------KL-----------WAG-------------GLELVRLMPA-LGLDYDHFTLSA 192
           A       KL           W                LEL R M        + FT+S+
Sbjct: 168 AGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSS 227

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
            L A A + +   G+++H +++R   +L  D  + S+L +MYGKCG + +A  +F+    
Sbjct: 228 ALAASAAIQSLHLGKEIHGHILRIGLDL--DGVVWSALSDMYGKCGSIGEARHIFDKT-- 283

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
                +++DVV WT+M+  Y + G  +E   L+  +L +G  P+E  F  V++AC+    
Sbjct: 284 -----VDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAA 338

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
            +LG +   +M      +P     S LV +  + G +  A ++ N     G     +  W
Sbjct: 339 EELGKQVHGYMTR-IGFDPSSFAASTLVHMYTKCGNIKNARRVFN-----GMPRPDLVSW 392

Query: 373 GALLSACHDCGK 384
            +L+S     G+
Sbjct: 393 TSLISGYAQNGQ 404


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/400 (34%), Positives = 216/400 (54%), Gaps = 15/400 (3%)

Query: 51  PLP----FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PLP    FN VI    +   PL+ +  +  M    +    Y   S + +   +   R GK
Sbjct: 68  PLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGK 127

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            V  H   SG+    +V +AL+  Y+K   +  A  +FD +P K+ V  N+L+SG+ +  
Sbjct: 128 GVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNG 187

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L    +++   M   G + D  T  +LL ACA   A   G  VH Y+I +  +L  +V +
Sbjct: 188 LADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDL--NVKL 245

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++LI +Y +CG V KA +VF+            +V  WT+M+  YG +GY ++ ++L+ 
Sbjct: 246 GTALINLYSRCGDVGKAREVFDKMK-------ETNVAAWTAMISAYGTHGYGQQAVELFN 298

Query: 287 AMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
            M  + G  P+ V FV V+SAC+H G V+ G   ++ M   Y+L PG EH+ C+VD+L R
Sbjct: 299 KMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGR 358

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG LD+A+K I++ LD    +++ ++W A+L AC     ++LG   A++ + L+P N G 
Sbjct: 359 AGFLDEAYKFIHQ-LDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGH 417

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +VMLSN+YA     DE+  +R+ M    L+K VG S IEV
Sbjct: 418 HVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEV 457



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 161/315 (51%), Gaps = 32/315 (10%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +QV AH+  +G+  S  + + LI L      I    L+F  +P+ +    N+++    + 
Sbjct: 26  QQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKL 85

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +L    +   R M +  +   ++T ++++++CA LSA   G+ VH + +      G D +
Sbjct: 86  RLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAV--VSGFGLDTY 143

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q++L+  Y KCG +  A QVF+    R+     K +V W S++  + +NG   E I+++
Sbjct: 144 VQAALVTFYSKCGDMEGARQVFD----RMP---EKSIVAWNSLVSGFEQNGLADEAIQVF 196

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
             M  +G +PD   FV+++SAC+ TG V LG     W VH Y +  G +      + L++
Sbjct: 197 YQMRESGFEPDSATFVSLLSACAQTGAVSLG----SW-VHQYIISEGLDLNVKLGTALIN 251

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ--KALELD 399
           L  R G++ KA ++ ++M +     ++V+ W A++SA    G    G+ A +    +E D
Sbjct: 252 LYSRCGDVGKAREVFDKMKE-----TNVAAWTAMISA---YGTHGYGQQAVELFNKMEDD 303

Query: 400 ----PHNVGIYVMLS 410
               P+NV    +LS
Sbjct: 304 CGPIPNNVTFVAVLS 318


>gi|357450533|ref|XP_003595543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484591|gb|AES65794.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 958

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 218/390 (55%), Gaps = 20/390 (5%)

Query: 57  VISDFCRNGSPLYALKTFSFMH-VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
           +IS F RN     +LK F  M+ V G+  D Y   + LTA  ++   R GK+V   V   
Sbjct: 560 IISCFTRNDMFKESLKFFYVMNRVRGVVPDGYTFGTILTACANLGLLRQGKEVHGKVVGL 619

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVCANALLSGYCEAKLWAGGLEL 174
           G+  +V V S+L+D+Y K   +  + ++F+ +   KN+V   A+L  YC+ K +   L+L
Sbjct: 620 GFGGNVVVESSLLDMYGKCGCVRHSRIVFERLSDEKNNVSWTAMLGVYCQNKEYQNVLDL 679

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
           VR       D + +    +LRAC+GL+A   G++VH   +RK      DV ++S+L+++Y
Sbjct: 680 VRERG----DLNFYAFGIVLRACSGLAAVNHGKEVHCMYVRK--GGSKDVIIESALVDLY 733

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG+V  A  +F     R       +++ W SM+  + +NG   E + L+E M+  G K
Sbjct: 734 AKCGMVDFACTMFASMEVR-------NLITWNSMVSGFAQNGRGVEALALFEDMIKEGIK 786

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           PD + FV V+ ACSH G V  G + F  M  +Y ++P  EHY+C++DLL RAG +D+A  
Sbjct: 787 PDSITFVAVLFACSHAGLVDEGRKVFTLM-GEYGIKPVVEHYNCMIDLLGRAGFIDEAEC 845

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
           L    L+        S+W ALL AC  C  +   +  A+K +EL+P     YV+L+N+Y 
Sbjct: 846 L----LENADCRYDKSLWAALLGACTKCSDYRTAERVARKMIELEPDFHLSYVLLNNIYR 901

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +   WD+  ++R+LM+++G+KK  G SWI+
Sbjct: 902 EVGRWDDALEIRKLMEDRGVKKMAGKSWID 931



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 132/279 (47%), Gaps = 28/279 (10%)

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV-CANALLSGYCEAKLWAG 170
           V   G+  +  V  +LID+Y     + DA  +FDE+ VK+ V C  +++S +    ++  
Sbjct: 513 VLTRGFDWNTVVSCSLIDMYGWNRAVDDARRVFDELFVKDDVFCWTSIISCFTRNDMFKE 572

Query: 171 GLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
            L+   +M  + G+  D +T   +L ACA L     G++VH  ++      G +V ++SS
Sbjct: 573 SLKFFYVMNRVRGVVPDGYTFGTILTACANLGLLRQGKEVHGKVV--GLGFGGNVVVESS 630

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L++MYGKCG V  +  VF     RL  E N   V WT+MLGVY +N  ++ V+ L    +
Sbjct: 631 LLDMYGKCGCVRHSRIVF----ERLSDEKNN--VSWTAMLGVYCQNKEYQNVLDL----V 680

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCR 345
                 +  AF  V+ ACS    V  G E     VH   +  G        S LVDL  +
Sbjct: 681 RERGDLNFYAFGIVLRACSGLAAVNHGKE-----VHCMYVRKGGSKDVIIESALVDLYAK 735

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            G +D A  +   M  R     ++  W +++S     G+
Sbjct: 736 CGMVDFACTMFASMEVR-----NLITWNSMVSGFAQNGR 769


>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
 gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
          Length = 517

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/396 (35%), Positives = 214/396 (54%), Gaps = 19/396 (4%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N  IS   R G    AL  F+ M   G+  D Y L   L  S ++  A     + A + +
Sbjct: 13  NAAISRCSRAGLHRRALALFTEMRARGLRADEYTLPPILN-SAALLRAPPAAALHALLLR 71

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           +G  S + V +AL+D YAKL  +  A  +FDE+P ++ V   +L++G   A      +  
Sbjct: 72  AGLASHLHVANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRA 131

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIE 232
            R M A G+  D F ++A+L +CAG +A E GR VHA  +R     G++ F+   +SL+ 
Sbjct: 132 YRDMVAAGVATDEFAVAAVLSSCAGSTALELGRSVHAAAVRS----GHEPFLSVGNSLVS 187

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY K G +  A  VF+    R         + WT+++  Y +NG  +E + +Y  M  +G
Sbjct: 188 MYAKTGSLRDARTVFDAMRSRC-------AITWTALIVGYAQNGRGRESLAVYADMARSG 240

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            +PD V FV ++ ACSH G +  G  +F+ M  ++ + PGP+HY+C+VDLL RAG L +A
Sbjct: 241 CRPDYVTFVGLLFACSHAGLLDAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEA 300

Query: 353 WKLINEMLDRGHGSS-SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
                ++LDR   +    ++W ALL+AC       L + AA     LDP +   YVMLSN
Sbjct: 301 ----VDLLDRSPAAELDATVWKALLAACRTHRNAALAERAAGMVWRLDPTDAMPYVMLSN 356

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LY++   W ++ ++R LM+ +G+ K+ GCSW+ V G
Sbjct: 357 LYSRARRWGDVARVRALMRSRGISKEPGCSWVVVAG 392



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 103/239 (43%), Gaps = 8/239 (3%)

Query: 34  KNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
             LG        +  R+ + +  +++   R GS   A++ +  M   G+  D +A+ + L
Sbjct: 92  SRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMVAAGVATDEFAVAAVL 151

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           ++         G+ V A   +SG    + VG++L+ +YAK   + DA  +FD +  + ++
Sbjct: 152 SSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDARTVFDAMRSRCAI 211

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR-QVHAY 212
              AL+ GY +       L +   M   G   D+ T   LL AC+     + GR    + 
Sbjct: 212 TWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAGLLDAGRAHFQSM 271

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
                 + G D +  + ++++ G+ G + +A+ + + +          D  +W ++L  
Sbjct: 272 QSEHGISPGPDHY--ACMVDLLGRAGRLGEAVDLLDRS-----PAAELDATVWKALLAA 323


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 237/446 (53%), Gaps = 20/446 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHAH  +T  L    +  ++RL++ Y  C     L      L  +  +N + +  +IS 
Sbjct: 73  RVHAHMIKTRYLPATYL--RTRLLIFYGKC---DCLEDARKVLDEMPEKNVVSWTAMISR 127

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + + G    AL  F+ M       + +   + LT+         GKQ+   + K  + S 
Sbjct: 128 YSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSH 187

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +FVGS+L+D+YAK   I +A  +F+ +P ++ V   A+++GY +  L    LE+   + +
Sbjct: 188 IFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHS 247

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  ++ T ++LL A +GL+  + G+Q H +++R+   L     +Q+SLI+MY KCG +
Sbjct: 248 EGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRR--ELPFYAVLQNSLIDMYSKCGNL 305

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVA 299
           + A ++F+    R         + W +ML  Y ++G  +EV++L+  M      KPD V 
Sbjct: 306 SYARRLFDNMPER-------TAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVT 358

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            + V+S CSH      G+  F+ MV  +Y  +PG EHY C+VD+L RAG +D+A++ I  
Sbjct: 359 LLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKR 418

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M  +     +  + G+LL AC      ++G+   ++ +E++P N G YV+LSNLYA    
Sbjct: 419 MPSK----PTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGR 474

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIE 444
           W ++  +R +M +K + K+ G SWI+
Sbjct: 475 WADVNNVRAMMMQKAVTKEPGRSWIQ 500



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 154/323 (47%), Gaps = 26/323 (8%)

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           IS  C NG    AL   + +     F    AL ++     +++D   G++V AH+ K+ +
Sbjct: 27  ISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRD---GQRVHAHMIKTRY 83

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           L + ++ + L+  Y K   + DA  + DE+P KN V   A++S Y +    +  L +   
Sbjct: 84  LPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAE 143

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M       + FT + +L +C   S    G+Q+H  +++   N  + +F+ SSL++MY K 
Sbjct: 144 MMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVK--WNYDSHIFVGSSLLDMYAKA 201

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G + +A ++F     R       DVV  T+++  Y + G  +E ++++  +   G  P+ 
Sbjct: 202 GQIKEAREIFECLPER-------DVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNY 254

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAW 353
           V + ++++A S    +  G +      H + L      Y+     L+D+  + G L  A 
Sbjct: 255 VTYASLLTALSGLALLDHGKQ-----AHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAR 309

Query: 354 KLINEMLDRGHGSSSVSMWGALL 376
           +L + M +R    +++S W A+L
Sbjct: 310 RLFDNMPER----TAIS-WNAML 327


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/446 (30%), Positives = 238/446 (53%), Gaps = 20/446 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHAH  +T  L    +  ++RL++ Y  C     L      L  +  +N + +  +IS 
Sbjct: 72  RVHAHMIKTRYLPATYL--RTRLLIFYGKC---DCLEDARKVLDEMPEKNVVSWTAMISR 126

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + + G    AL  F+ M       + +   + LT+         GKQ+   + K  + S 
Sbjct: 127 YSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSH 186

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           +FVGS+L+D+YAK   I +A  +F+ +P ++ V   A+++GY +  L    LE+ + + +
Sbjct: 187 IFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQS 246

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  ++ T ++LL A +GL+  + G+Q H +++R+   L     +Q+SLI+MY KCG +
Sbjct: 247 EGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRR--ELPFYAVLQNSLIDMYSKCGNL 304

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVA 299
           + A ++F+    R         + W +ML  Y ++G  +EV++L+  M      KPD V 
Sbjct: 305 SYAQRLFDNMPER-------TAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVT 357

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            + V+S CSH      G+  ++ MV  +Y ++P  EHY C+VD+L RAG +D+A++ I  
Sbjct: 358 LLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKR 417

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M  +     +  + G+LL AC      ++G+    + +E++P N G YV+LSNLYA    
Sbjct: 418 MPSK----PTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGR 473

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIE 444
           W+++  +R +M +K + K+ G SWI+
Sbjct: 474 WEDVNNVRAMMMQKAVTKEPGRSWIQ 499



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 158/334 (47%), Gaps = 26/334 (7%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +P + L     IS  C NG    AL     +   G  +  +   + L A    +  R G+
Sbjct: 15  SPNSVLQTFRPISQLCSNGRLQEALLEMVML---GPEIGFHCYDALLNACLDKRALREGQ 71

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           +V AH+ K+ +L + ++ + L+  Y K   + DA  + DE+P KN V   A++S Y +  
Sbjct: 72  RVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTG 131

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
             +  L +   M       + FT + +L +C   S    G+Q+H  +++   N  + +F+
Sbjct: 132 HSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVK--WNYDSHIFV 189

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            SSL++MY K G + +A ++F     R       DVV  T+++  Y + G  +E +++++
Sbjct: 190 GSSLLDMYAKAGQIEEAREIFECLPER-------DVVSCTAIIAGYAQLGLDEEALEMFQ 242

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDL 342
            +   G +P+ V + ++++A S    +  G +      H + L      Y+     L+D+
Sbjct: 243 RLQSEGMRPNYVTYASLLTALSGLALLDHGKQ-----AHCHVLRRELPFYAVLQNSLIDM 297

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             + G L  A +L + M +R    +++S W A+L
Sbjct: 298 YSKCGNLSYAQRLFDNMPER----TAIS-WNAML 326


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/406 (32%), Positives = 220/406 (54%), Gaps = 15/406 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + +N  + + +N +IS F  NG    ++K F  +   G  + +  +   +   +     
Sbjct: 267 FRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHL 326

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
                +     KSG + +  V +A   +Y KL  I  A  +FDE P K  V  NA++SGY
Sbjct: 327 HLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGY 386

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       + L + M       +  T++ +L ACA L +  FG+ VH  +  K  NL  
Sbjct: 387 TQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLI--KSENLEP 444

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           ++++ ++L++MY KCG +++A Q+F+           K+ V W +M+  YG +GY  E +
Sbjct: 445 NIYVSTALVDMYAKCGNISEAWQLFDSMSE-------KNTVTWNTMIFGYGLHGYGHEAL 497

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           KLY  ML  G  P  V F++V+ ACSH G V  G E F  MV+ Y++EP  EHY+C+VD+
Sbjct: 498 KLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDI 557

Query: 343 LCRAGELDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           L R+G+L+KA + I +M ++ G      ++WG LL AC      ++ +LA+++  ELDP 
Sbjct: 558 LGRSGQLEKALEFIKKMPVEPG-----PAVWGTLLGACMIHKDTDIARLASERLFELDPG 612

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +VG YV+LSN+Y+    + +   +R+++K++ L K  GC+ IEV G
Sbjct: 613 SVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNG 658



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 186/413 (45%), Gaps = 49/413 (11%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           FNV++  F  N SP  ++  ++ +  +  +  D +    ++ A ++ K       + AH 
Sbjct: 78  FNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML---LHAHS 134

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G+ S+VFVGSAL+DLY K   +  A  +FD +P +++V  N +++G  +   +   +
Sbjct: 135 IIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSI 194

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           +L R M A G+  D  T++A+L A A L   + G  +    ++     G   ++ + LI 
Sbjct: 195 QLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALK--IGFGFCDYVLTGLIS 252

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +Y KCG V  A  +F          IN+ D++ + +M+  +  NG  +  +KL+  +L +
Sbjct: 253 LYSKCGDVNTARLLFR--------RINRPDLIAYNAMISGFTANGGTECSVKLFRELLFS 304

Query: 292 GTKPDEVAFVTVIS----------ACS-HTGQVKLGI---------------EYFEWMVH 325
           G +      V +I           ACS H   VK GI               +  E  + 
Sbjct: 305 GERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLA 364

Query: 326 DYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            +  +  PE     ++ ++    + G  + A  L  EM+      ++V++   +LSAC  
Sbjct: 365 RHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTI-TTILSACAQ 423

Query: 382 CGKFELGKLAAQ--KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
            G    GK      K+  L+P N+ +   L ++YAK     E  QL + M EK
Sbjct: 424 LGSLSFGKWVHHLIKSENLEP-NIYVSTALVDMYAKCGNISEAWQLFDSMSEK 475


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 209/376 (55%), Gaps = 13/376 (3%)

Query: 70   ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
            AL+ FS +H  G   D   L ++  A   +     GKQ+ AH  K+G+ S + V S ++D
Sbjct: 1091 ALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILD 1150

Query: 130  LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
            +Y K   + +A ++F+ I   + V   +++SG  +       L +   M    +  D +T
Sbjct: 1151 MYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYT 1210

Query: 190  LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
             + L++A + ++A E GRQ+HA +I+  C   +D F+ +SL++MY KCG +  A ++F  
Sbjct: 1211 FATLIKASSCVTALEQGRQLHANVIKLDC--VSDPFVGTSLVDMYAKCGNIEDAYRLFKK 1268

Query: 250  AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
               R       ++ LW +ML    ++G  +E + L+++M  +G +PD V+F+ ++SACSH
Sbjct: 1269 MNVR-------NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 1321

Query: 310  TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
             G      EY   M +DY +EP  EHYSCLVD L RAG + +A K+I  M  +    +S 
Sbjct: 1322 AGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFK----ASA 1377

Query: 370  SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
            S+  ALL AC   G  E GK  A +   L+P +   YV+LSN+YA    WD++   R++M
Sbjct: 1378 SINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMM 1437

Query: 430  KEKGLKKDVGCSWIEV 445
            K K +KKD G SWI+V
Sbjct: 1438 KRKNVKKDPGFSWIDV 1453



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 172/364 (47%), Gaps = 22/364 (6%)

Query: 52   LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA-RFGKQVQA 110
            + +N +IS   ++     ++  F  +   G+  D + L S L A +S+ D     +Q+  
Sbjct: 971  ISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHV 1030

Query: 111  HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            H  K+G ++  FV + LID+Y+K   + +AE +F      +  C NA++ GY        
Sbjct: 1031 HALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKK 1090

Query: 171  GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
             LEL  L+   G   D  TL+   +AC  L   + G+Q+HA+ I+      +D+ + S +
Sbjct: 1091 ALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIK--AGFDSDLHVNSGI 1148

Query: 231  IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
            ++MY KCG +  A  VFN            D V WTSM+     NG   + +++Y  M  
Sbjct: 1149 LDMYIKCGDMVNAGIVFNYISA-------PDDVAWTSMISGCVDNGNEDQALRIYHRMRQ 1201

Query: 291  NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE--PGPEHYSCLVDLLCRAGE 348
            +   PDE  F T+I A S    ++ G +    ++   KL+    P   + LVD+  + G 
Sbjct: 1202 SRVMPDEYTFATLIKASSCVTALEQGRQLHANVI---KLDCVSDPFVGTSLVDMYAKCGN 1258

Query: 349  LDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIY 406
            ++ A++L  +M  R     ++++W A+L   A H   +  +    + K+  ++P  V   
Sbjct: 1259 IEDAYRLFKKMNVR-----NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFI 1313

Query: 407  VMLS 410
             +LS
Sbjct: 1314 GILS 1317



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 165/348 (47%), Gaps = 30/348 (8%)

Query: 46   LNPRNPLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
            L+  NP  F  N  +S+    G    A++ F  M+   I  D   L   L A     D  
Sbjct: 862  LSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLE 921

Query: 104  FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
             GKQV     KSG  S V V ++L+++Y+K+   + A  +F+++   + +  N+++S   
Sbjct: 922  LGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA 981

Query: 164  EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL-SAAEFGRQVHAYMIRKCCNLGN 222
            ++ L    + L   +   GL  DHFTL+++LRAC+ L       RQ+H + + K  N+  
Sbjct: 982  QSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHAL-KTGNIA- 1039

Query: 223  DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY--GRNGYFKE 280
            D F+ ++LI++Y K G + +A  +F       + + + D+  W +M+  Y  G +G  K+
Sbjct: 1040 DSFVATTLIDVYSKSGKMEEAEFLF-------QNKDDLDLACWNAMMFGYIIGNDG--KK 1090

Query: 281  VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----Y 336
             ++L+  +  +G K D++   T   AC     +  G +     +H + ++ G +      
Sbjct: 1091 ALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQ-----IHAHAIKAGFDSDLHVN 1145

Query: 337  SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            S ++D+  + G++  A  + N +      +     W +++S C D G 
Sbjct: 1146 SGILDMYIKCGDMVNAGIVFNYI-----SAPDDVAWTSMISGCVDNGN 1188



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 122/261 (46%), Gaps = 10/261 (3%)

Query: 2    VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
            +HAH  + G      +   S ++  Y  C    N G + N   +++  + + +  +IS  
Sbjct: 1129 IHAHAIKAGF--DSDLHVNSGILDMYIKCGDMVNAGIVFN---YISAPDDVAWTSMISGC 1183

Query: 62   CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
              NG+   AL+ +  M    +  D Y   + + AS+ V     G+Q+ A+V K   +S  
Sbjct: 1184 VDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDP 1243

Query: 122  FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            FVG++L+D+YAK   I DA  +F ++ V+N    NA+L G  +       + L + M + 
Sbjct: 1244 FVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSH 1303

Query: 182  GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYGKCGL 239
            G++ D  +   +L AC   S A    + + Y+     + G +  ++  S L++  G+ GL
Sbjct: 1304 GIEPDRVSFIGILSAC---SHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGL 1360

Query: 240  VTKALQVFNLAGHRLEGEINK 260
            V +A +V      +    IN+
Sbjct: 1361 VQEADKVIETMPFKASASINR 1381



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 14/221 (6%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L  + S  +   GK   A +  SG     F+ + L+ +Y+K   +  A  +FD  P ++ 
Sbjct: 628 LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDL 687

Query: 153 VCANALLSGYCEA-----KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           V  NA+L  Y  +          GL L RL+ A        TL+ +L+ C          
Sbjct: 688 VTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAE 747

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
            VH Y I+    L  DVF+  +L+ +Y KCG +  A  +F+    R       DVVLW  
Sbjct: 748 GVHGYAIK--IGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER-------DVVLWNM 798

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           ML  Y + G  KE  +L+     +G +PDE +   +++  S
Sbjct: 799 MLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVS 839



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V  +  K G    VFV  AL+++Y+K   + DA L+FD +  ++ V  N +L GY +  L
Sbjct: 749 VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 808

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE---FGRQVHAYMIRKCCNLGN-D 223
                +L       GL  D F++  +L   + ++  E      QV AY  +   +  N D
Sbjct: 809 EKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPD 868

Query: 224 VF 225
           VF
Sbjct: 869 VF 870


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/434 (33%), Positives = 227/434 (52%), Gaps = 50/434 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFS-----FMHVHGIFL-DTYALCSSLTASTSVKDA 102
           R+ + +N +IS +  NG    AL+ +      FM +   F  D   + S L A   + D 
Sbjct: 179 RDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDL 238

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
            FGK V  ++  SG+       + LI++YAK   +  ++ +F  +  K+SV  N++++ Y
Sbjct: 239 EFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVY 298

Query: 163 CEA-------KLWAG------------------------GLELVRLMPALGLDYDHFTLS 191
            +        K++                          GL ++  M   G+  D  T+ 
Sbjct: 299 IQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATML 358

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           ++L  C+ L+A   G+++H  + +    L +DV + + LIEMY KCG +  + QVF L  
Sbjct: 359 SILPVCSLLAAKRQGKEIHGCIFK--LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK 416

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
                   KDVV WT+++   G  G  K+ ++ +  M   G  PD VAFV +I ACSH+G
Sbjct: 417 -------TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSG 469

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            V+ G+ YF  M  DYK+EP  EHY+C+VDLL R+  LDKA   I  M  +       S+
Sbjct: 470 LVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDS----SI 525

Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           WGALLSAC   G  E+ +  +++ +EL+P + G YV++SN+YA    WD++  +R+ +K 
Sbjct: 526 WGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKA 585

Query: 432 KGLKKDVGCSWIEV 445
           +GLKKD GCSW+E+
Sbjct: 586 RGLKKDPGCSWMEI 599



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 187/428 (43%), Gaps = 65/428 (15%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLP-FNVVISDFCRNGSPLYALKTFS 75
           +IF ++L+  Y    H ++  +  +  +  +P N +  +N +I     NG    AL  +S
Sbjct: 48  VIFSAKLIAKYA---HFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYS 104

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
                 +  DTY   S + A   + D    K +   V   G+ S +++G+ALID+Y +  
Sbjct: 105 ETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFN 164

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY------DHFT 189
            +  A  +F+E+P+++ V  N+L+SGY     W   LE+      L ++       D  T
Sbjct: 165 DLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLT 224

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           ++++L+AC  L   EFG+ VH YMI        D    + LI MY KCG +  + +VF+ 
Sbjct: 225 ITSILQACGHLGDLEFGKYVHDYMITS--GYECDTTASNILINMYAKCGNLLASQEVFS- 281

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                 G   KD V W SM+ VY +NG   + +K++E M       D + + T+I++C H
Sbjct: 282 ------GMKCKDSVSWNSMINVYIQNGKMGDSLKVFENM----KARDIITWNTIIASCVH 331

Query: 310 TGQVKLGIEYFEWMVHD-------------------YKLEPGPEHYSC------------ 338
           +    LG+     M  +                        G E + C            
Sbjct: 332 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 391

Query: 339 ---LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
              L+++  + G L  ++++   M      +  V  W AL+SA   CG +  GK A +  
Sbjct: 392 GNVLIEMYSKCGSLRNSFQVFKLM-----KTKDVVTWTALISA---CGMYGEGKKAVRAF 443

Query: 396 LELDPHNV 403
            E++   +
Sbjct: 444 GEMEAAGI 451



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 33/230 (14%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
            S++ RA A  +      ++H+ +I     L + V   + LI  Y      T +  VF L
Sbjct: 16  FSSISRALASAATTTQLHKLHSLII--TLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRL 73

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
           A        + +V LW S++     NG F E + LY        +PD   F +VI+AC+ 
Sbjct: 74  ASP------SNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA- 126

Query: 310 TGQVKLGIEYFEWM--VHDYKLEPG--PEHY--SCLVDLLCRAGELDKAWKLINEMLDRG 363
                 G+  FE    +HD  L+ G   + Y  + L+D+ CR  +LDKA K+  EM  R 
Sbjct: 127 ------GLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR- 179

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
                V  W +L+S  +  G +        +ALE+   ++ +++ + N +
Sbjct: 180 ----DVVSWNSLISGYNANGYW-------NEALEIYYQSIKLFMEMVNQF 218


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/418 (32%), Positives = 223/418 (53%), Gaps = 16/418 (3%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDT-Y 87
           R  + L +       +  R+   ++ ++S   R+G P  AL  +  M        +D  +
Sbjct: 104 RSPRGLASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEF 163

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
              S+L A+T+ + AR G+++  HV + G  +   V SAL D+YAK   + DA  +FD +
Sbjct: 164 TASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRM 223

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           PV++ V   A++  Y +A+    G  L   M   G+  + FT + +LRACA  ++ + G+
Sbjct: 224 PVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGK 283

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           QVH  M +     G+  F +S+L+ MY K G +  A++VF        G    D+V WT+
Sbjct: 284 QVHGRMTK--SRAGDSCFAESALVHMYSKYGDMGTAVRVFR-------GMPKLDLVSWTA 334

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           M+  Y +NG   E ++ ++ +L +G +PD V FV V+SAC+H G V  G+  F  +  +Y
Sbjct: 335 MISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEY 394

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
            +E   +HY+C++DLL R+G  ++A ++IN M  +     +  +W +LL  C       L
Sbjct: 395 GIEHTADHYACVIDLLSRSGLFERAEEMINTMSVK----PNKFLWASLLGGCRIHKNVRL 450

Query: 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            + AA+   E++P N   YV L+N+YA   ++DE+   R +M+ KG+ K    SWIEV
Sbjct: 451 ARWAAEALFEIEPENPATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEV 508


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/400 (33%), Positives = 213/400 (53%), Gaps = 15/400 (3%)

Query: 51  PLP----FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PLP    FN VI    +   PL+ +  +  M    +    Y   S + +   +   + GK
Sbjct: 68  PLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGK 127

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            V  H   SG+    +V +AL+  Y+K   +  A  +FD +P K+ V  N+L+SG+ +  
Sbjct: 128 GVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNG 187

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L    + +   M   G + D  T  +LL ACA   A   G  VH Y++ +   L  +V +
Sbjct: 188 LAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSE--GLDVNVKL 245

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++LI +Y +CG V KA +VF+            +V  WT+M+  YG +GY K+ + L+ 
Sbjct: 246 GTALINLYSRCGDVGKAREVFDKMK-------ETNVAAWTAMISAYGTHGYGKQAVDLFN 298

Query: 287 AMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
            M  + G+ P+ V FV V+SAC+H G V+ G   ++ M   Y+L PG EH+ C+VD+L R
Sbjct: 299 KMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGR 358

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG LD+A++ I + LD    +++ ++W A+L AC     ++LG   A++ + L+P N G 
Sbjct: 359 AGFLDEAYRFIQQ-LDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGH 417

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +VMLSN+YA     DE+  +R+ M    L+K VG S IEV
Sbjct: 418 HVMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEV 457



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 161/315 (51%), Gaps = 32/315 (10%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +QV AH+  + +  S  + + LI L      I    L+F  +P+ +    N+++    + 
Sbjct: 26  QQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKL 85

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +L    +   R M +  +   ++T ++++++CA LSA + G+ VH + +      G D +
Sbjct: 86  RLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAV--VSGFGLDTY 143

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q++L+  Y KCG +  A QVF+    R+     K VV W S++  + +NG  ++ I+++
Sbjct: 144 VQAALVTFYSKCGDMEAARQVFD----RMP---EKSVVAWNSLVSGFEQNGLAEDAIRVF 196

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
             M  +G +PD   FV+++SAC+ TG + LG     W VH Y +  G +      + L++
Sbjct: 197 YQMRESGFEPDSATFVSLLSACAQTGAISLG----SW-VHQYIVSEGLDVNVKLGTALIN 251

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ--KALELD 399
           L  R G++ KA ++ ++M +     ++V+ W A++SA    G    GK A      +E D
Sbjct: 252 LYSRCGDVGKAREVFDKMKE-----TNVAAWTAMISA---YGTHGYGKQAVDLFNKMEDD 303

Query: 400 ----PHNVGIYVMLS 410
               P+NV    +LS
Sbjct: 304 CGSIPNNVTFVAVLS 318



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 144/362 (39%), Gaps = 51/362 (14%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VH H   +G  L   +  Q+ L+  Y+ C    ++         +  ++ + +N ++S F
Sbjct: 129 VHCHAVVSGFGLDTYV--QAALVTFYSKC---GDMEAARQVFDRMPEKSVVAWNSLVSGF 183

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +NG    A++ F  M   G   D+    S L+A         G  V  ++   G   +V
Sbjct: 184 EQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNV 243

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP-A 180
            +G+ALI+LY++   +  A  +FD++   N     A++S Y         ++L   M   
Sbjct: 244 KLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDD 303

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G   ++ T  A+L ACA     E GR V+  M  +   L   V     +++M G+ G +
Sbjct: 304 CGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMT-ESYRLIPGVEHHVCIVDMLGRAGFL 362

Query: 241 TKALQVFNLAGHRLEGEINKDV-VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
            +A +       +L+   N     LWT+MLG                             
Sbjct: 363 DEAYRFI----QQLDATGNATAPALWTAMLG----------------------------- 389

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINE 358
                 AC       LG+E  + ++    LEP  P H+  L ++   +G+ D+   + + 
Sbjct: 390 ------ACKMHRNYDLGVEIAKRLI---ALEPENPGHHVMLSNIYALSGKTDEVSHIRDR 440

Query: 359 ML 360
           M+
Sbjct: 441 MM 442


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/399 (34%), Positives = 216/399 (54%), Gaps = 15/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN   +N  IS+   +G P  A++ F      G   ++   C  L A +       G Q+
Sbjct: 172 RNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQM 231

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V +SG+ + V V + LID Y K   I  +E++F E+ +KN+V   +L++ Y +    
Sbjct: 232 HGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHED 291

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                L        ++   F +S++L ACAG++  E GR +HA+ ++ C     ++F+ S
Sbjct: 292 EKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVE--RNIFVGS 349

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MYGKCG +  + Q F+           K++V   S++G Y   G     + L+E M
Sbjct: 350 ALVDMYGKCGCIEDSEQAFDEMPE-------KNLVTLNSLIGGYAHQGQVDMALALFEDM 402

Query: 289 LMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
              G    P+ + FV+++SACS  G V+ G++ F+ M   Y +EPG EHYSC+VD+L RA
Sbjct: 403 APRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRA 462

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G +++A++ I +M  +     ++S+WGAL +AC   GK  LG LAA+   +LDP + G +
Sbjct: 463 GMVEQAFEFIKKMPIK----PTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNH 518

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           V+LSN +A    W E   +RE MK  G+KK  G SWI V
Sbjct: 519 VLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITV 557



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 147/377 (38%), Gaps = 40/377 (10%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+    RN + +  ++S   +NG    AL  F  M   G+  + +       A  S++  
Sbjct: 65  LRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLP 124

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GKQ+ A   K G +  VFVG +  D+Y K  L  DA  +FDEIP +N    NA +S  
Sbjct: 125 VTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNS 184

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                    +E       +G   +  T    L AC+     + G Q+H  + R       
Sbjct: 185 VTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRS--GFDT 242

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV + + LI+ YGKC  +  +  +F   G        K+ V W S++  Y +N   ++  
Sbjct: 243 DVSVYNGLIDFYGKCKQIRSSEIIFAEMGM-------KNAVSWCSLVAAYVQNHEDEKAS 295

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH----------------- 325
            LY        +  +    +V+SAC+    ++LG       V                  
Sbjct: 296 VLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMY 355

Query: 326 ---------DYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM- 371
                    +   +  PE      + L+      G++D A  L  +M  RG G +   M 
Sbjct: 356 GKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMT 415

Query: 372 WGALLSACHDCGKFELG 388
           + +LLSAC   G  E G
Sbjct: 416 FVSLLSACSRAGAVENG 432



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 125/287 (43%), Gaps = 16/287 (5%)

Query: 93  LTASTSVKDARFGKQVQAHVTKS-GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           L  + S    R G+ V A + K+       F+ + LI++Y+KL     A L+    P +N
Sbjct: 13  LKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARN 72

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V   +L+SG  +   ++  L     M   G+  + FT   + +A A L     G+Q+HA
Sbjct: 73  VVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHA 132

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
             ++  C    DVF+  S  +MY K  L   A ++F+    R       ++  W + +  
Sbjct: 133 LAVK--CGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPER-------NLETWNAYISN 183

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
              +G  KE I+ +      G +P+ + F   ++ACS    + LG++    +V     + 
Sbjct: 184 SVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQ-MHGLVFRSGFDT 242

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
               Y+ L+D   +  ++  +  +  EM     G  +   W +L++A
Sbjct: 243 DVSVYNGLIDFYGKCKQIRSSEIIFAEM-----GMKNAVSWCSLVAA 284


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/411 (33%), Positives = 213/411 (51%), Gaps = 25/411 (6%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           P + + +  VI+ + + G    AL  F  M   G   +   + S L+A  S+     G +
Sbjct: 325 PLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGME 384

Query: 108 VQAHVTKSGWLS----------SVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCA 155
           + A+  K+  L+           + V +ALID+Y+K      A  +FD+IP+  +N V  
Sbjct: 385 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 444

Query: 156 NALLSGYCEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             ++ G+ +       L+L   M     G+  + +T+S +L ACA L+A   G+Q+HAY+
Sbjct: 445 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 504

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           +R      +  F+ + LI MY KCG V  A  VF+           K  + WTSM+  YG
Sbjct: 505 LRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQ-------KSAISWTSMMTGYG 557

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +G   E + +++ M   G  PD++ F+ V+ ACSH G V  G+ YF+ M  DY L P  
Sbjct: 558 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 617

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHY+  +DLL R G LDKAWK + +M        +  +W ALLSAC      EL + A  
Sbjct: 618 EHYAYAIDLLARFGRLDKAWKTVKDM----PMEPTAVVWVALLSACRVHSNVELAEHALN 673

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           K +E++  N G Y ++SN+YA    W ++ ++R LMK+ G+KK  GCSW++
Sbjct: 674 KLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 724



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 185/419 (44%), Gaps = 63/419 (15%)

Query: 13  LICLIIFQSR------LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS 66
           LIC   F+S       L+  Y+ C   +    + + +      + + +N ++S   ++ +
Sbjct: 142 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 201

Query: 67  PLYALKTFSFMH--VH----GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
              AL  FS M   VH        D  ++ + L A  S+K     K+V  +  ++G    
Sbjct: 202 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 261

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           VFVG+ALID YAK  L+ +A  +F+ +  K+ V  NA+++GY ++  +    EL + M  
Sbjct: 262 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 321

Query: 181 LGLDYDHFTLSA-----------------------------------LLRACAGLSAAEF 205
             +  D  T +A                                   +L ACA L A   
Sbjct: 322 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 381

Query: 206 GRQVHAYMIRKC-CNLGN-------DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           G ++HAY ++ C   L N       D+ + ++LI+MY KC     A  +F+     LE  
Sbjct: 382 GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFD--DIPLE-- 437

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN--GTKPDEVAFVTVISACSHTGQVKL 315
             ++VV WT M+G + + G   + +KL+  M+    G  P+      ++ AC+H   +++
Sbjct: 438 -ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 496

Query: 316 GIEYFEWMVHDYKLEPGPEHYS-CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           G +   +++  ++ +      + CL+++  + G++D A  + + M  +   S +  M G
Sbjct: 497 GKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 555



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 50/356 (14%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           L+ + P   + +N++I +  + G    A+     M   G  LD + L   L A   +   
Sbjct: 74  LERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSY 133

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP---VKNSVCANALL 159
           R G      +  +G+ S+VF+ +AL+ +Y++   + +A ++FDEI    + + +  N+++
Sbjct: 134 RCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIV 193

Query: 160 SGYCEAKLWAGGLELVRLMPAL------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
           S + ++      L+L   M  +          D  ++  +L AC  L A    ++VH   
Sbjct: 194 SAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNA 253

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL-------------AGHRLEG---- 256
           IR    L  DVF+ ++LI+ Y KCGL+  A++VFN+             AG+   G    
Sbjct: 254 IRNGTFL--DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKA 311

Query: 257 -----------EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
                       I  D+V WT+++  Y + G   E + ++  M+ +G+ P+ V  ++V+S
Sbjct: 312 AFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLS 371

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           AC+  G    G+E     +H Y L+      +CL+ L    G  D+   + N ++D
Sbjct: 372 ACASLGAFSQGME-----IHAYSLK------NCLLTLDNDFGGEDEDLMVYNALID 416



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 126/298 (42%), Gaps = 32/298 (10%)

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           ++S   +G+ ++  Y        A L+ + +    +V  N L+  + +       + +  
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 106

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN-LGNDVFMQSSLIEMYG 235
            M   G   DHFTL  +L+AC  L +   G   H  +   CCN   ++VF+ ++L+ MY 
Sbjct: 107 RMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLI---CCNGFESNVFICNALVAMYS 163

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM----- 290
           +CG + +A  +F+    R       DV+ W S++  + ++      + L+  M +     
Sbjct: 164 RCGSLEEASMIFDEITQRGI----DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 219

Query: 291 -NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP--EHY--SCLVDLLCR 345
               + D ++ V ++ AC     V    E     VH   +  G   + +  + L+D   +
Sbjct: 220 PTNERSDIISIVNILPACGSLKAVPQTKE-----VHGNAIRNGTFLDVFVGNALIDAYAK 274

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK----FELGKLAAQKALELD 399
            G ++ A K+ N M  +      V  W A+++     G     FEL K   ++ + LD
Sbjct: 275 CGLMENAVKVFNMMEFK-----DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLD 327


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 234/443 (52%), Gaps = 45/443 (10%)

Query: 38  TLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYA-LCSSLTAS 96
            L    + +  R+ + +NV+IS + +      A+  F  M          A + S+L+A 
Sbjct: 185 NLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSAC 244

Query: 97  TSVKDARFGKQVQAHVTKS-GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
            ++K    GK++  +V +  G+  ++ +G+AL+D+Y K   +  A  +F+++P+K  +C 
Sbjct: 245 IALKMLELGKEIHRYVREQLGF--TIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICW 302

Query: 156 NALLSGYC------EAK------------LWAG-------------GLELVRLMPALGLD 184
            +++SGY       EA+            LW                + L R M    + 
Sbjct: 303 TSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVS 362

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D FTL ALL  CA L   E G+ +H Y+      +  D  + ++LIEMY KCG + K+L
Sbjct: 363 PDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMI--DAVVGTALIEMYAKCGFIEKSL 420

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           ++FN       G   KD   WTS++     NG   + ++L+  M+  G KPD++ F+ V+
Sbjct: 421 EIFN-------GLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVL 473

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           SACSH G V+ G ++F  M   Y++EP  EHY CL+DLL RAG+LD+A +LI E     +
Sbjct: 474 SACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELI-EKSPNVN 532

Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQ 424
               V ++GALLSAC   G  E+G+  A++ + ++  +  ++ +L+N+YA    W+++ +
Sbjct: 533 NEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTK 592

Query: 425 LRELMKEKGLKKDVGCSWIEVTG 447
           +R  MK+ G+KK  GCS +EV G
Sbjct: 593 VRRKMKDLGVKKVPGCSSVEVNG 615



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 183/370 (49%), Gaps = 41/370 (11%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N+VI  F +NGS   A+  F  +   G+  D +       A   + + R G++V   V 
Sbjct: 100 YNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVV 159

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           KSG     +V ++L+D+YA++  + +   +F+E+P ++ V  N L+SGY + + +   ++
Sbjct: 160 KSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVD 219

Query: 174 LVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           + R M     L  +  T+ + L AC  L   E G+++H Y+  +   LG  + + ++L++
Sbjct: 220 VFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQ---LGFTIKIGNALVD 276

Query: 233 MYGKCGLVTKALQVFN-------------LAGHRLEGEIN-----------KDVVLWTSM 268
           MY KCG ++ A ++FN             ++G+   G+++           +DVVLWT+M
Sbjct: 277 MYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAM 336

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y +   F + + L+  M +    PD    V +++ C+  G ++ G ++    + + K
Sbjct: 337 INGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQG-KWIHGYIDENK 395

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           +       + L+++  + G ++K+ ++ N + ++   S     W +++     CG    G
Sbjct: 396 IMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTAS-----WTSII-----CGLAMNG 445

Query: 389 KLAAQKALEL 398
           K +  KALEL
Sbjct: 446 KTS--KALEL 453



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
           ++  ++  + +NG F++ + L+  +   G  PD   +  V  A    G+V+ G + + ++
Sbjct: 99  IYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFV 158

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           V    LE      + L+D+    G +    ++  EM  R      V  W  L+S    C 
Sbjct: 159 VKS-GLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQR-----DVVSWNVLISGYVKCR 212

Query: 384 KFE 386
           ++E
Sbjct: 213 RYE 215


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 211/399 (52%), Gaps = 14/399 (3%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           NP+ +N +I+ F  N  P    +    M+  G F D +     L    S  D + G+ + 
Sbjct: 166 NPVAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLH 225

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
               K    S+ F+G+ +I +Y+KL L+ +AE  F  I  K+ +  N  +S         
Sbjct: 226 CQTIKLKLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHE 285

Query: 170 GGLELVR-LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             LE  + ++    +  D FT ++ L AC+GL++   G+Q+H ++IR    L  DV   +
Sbjct: 286 KALEAFKEMLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIR--TRLYQDVGAGN 343

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI MY KCG + KA  +F+   H       +++V W +M+  +G +G+  +  +L+  M
Sbjct: 344 ALINMYAKCGCIAKAYYIFSKMEH-------QNLVSWNTMIAGFGNHGFGGKAFELFAKM 396

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G KPD V FV +++A +H G V  G+ YF  M   Y + P  EH+SCL+DLL RAG 
Sbjct: 397 KTMGVKPDSVTFVGLLTASNHAGLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGR 456

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A + + +    GH +    + G+LLSAC   G  + GK  A++ L+L P     YV+
Sbjct: 457 LNEAKEYMKK-FPFGHDT---VVLGSLLSACRLHGDVDTGKCFARQLLKLQPATTSPYVL 512

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSNLYA   MWD + +  +L+K  GLKK+ G S IEV G
Sbjct: 513 LSNLYASDEMWDGVAEAWKLLKGSGLKKEPGHSLIEVNG 551



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 181/399 (45%), Gaps = 28/399 (7%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I  + ++  Y  CR    L         ++ RN + ++ +IS + + G P+ AL  FS 
Sbjct: 38  VIVSNHILNLYAKCR---KLREARQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSK 94

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           ++   I  + Y   S ++A  S+K    GKQ+     K G  S  FV +ALI +Y K   
Sbjct: 95  LN---IVPNEYVYASVISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGK 151

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
             DA L ++E    N V  NAL++G+ E +    G E++R+M   G   D FT   LL  
Sbjct: 152 CSDALLAYNEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGT 211

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C      + G  +H   I+    L +  F+ + +I MY K  L+ +A + F      +E 
Sbjct: 212 CNSRDDLKRGELLHCQTIK--LKLNSTAFIGNLIITMYSKLNLLEEAEKAF----RSIE- 264

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN-GTKPDEVAFVTVISACSHTGQVKL 315
              KD++ W + +         ++ ++ ++ ML     +PDE  F + ++ACS    +  
Sbjct: 265 --EKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACSGLASMCN 322

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G +    ++   +L       + L+++  + G + KA+ + ++M  +     ++  W  +
Sbjct: 323 GKQIHGHLIRT-RLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQ-----NLVSWNTM 376

Query: 376 LSACHDCG----KFELGKLAAQKALELDPHNVGIYVMLS 410
           ++   + G     FEL   A  K + + P +V    +L+
Sbjct: 377 IAGFGNHGFGGKAFEL--FAKMKTMGVKPDSVTFVGLLT 413



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 18/290 (6%)

Query: 97  TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
           +  K  R G  + A   K+   S V V + +++LYAK   + +A  +FDE+  +N V  +
Sbjct: 14  SKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERNLVSWS 73

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           A++SGY +       +  + L   L +  + +  ++++ ACA L     G+Q+H   ++ 
Sbjct: 74  AMISGYEQI---GEPISALGLFSKLNIVPNEYVYASVISACASLKGLVQGKQIHGQALK- 129

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
              L +  F+ ++LI MY KCG  + AL  +N A       +  + V + +++  +  N 
Sbjct: 130 -FGLDSVSFVSNALITMYMKCGKCSDALLAYNEA-------LELNPVAYNALITGFVENQ 181

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
              +  ++   M  +G  PD   FV ++  C+    +K G E         KL       
Sbjct: 182 QPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRG-ELLHCQTIKLKLNSTAFIG 240

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           + ++ +  +   L++A K    + ++      +  W   +S+C  C   E
Sbjct: 241 NLIITMYSKLNLLEEAEKAFRSIEEK-----DLISWNTFISSCSHCNDHE 285


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 149/429 (34%), Positives = 224/429 (52%), Gaps = 52/429 (12%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +   G    A      MH  GI LD Y   S ++A+++      G+QV A+V 
Sbjct: 242 WNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL 301

Query: 114 KSGWLSS----VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK--- 166
           ++    S    + V +ALI LY +   + +A  +FD++PVK+ V  NA+LSG   A+   
Sbjct: 302 RTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIE 361

Query: 167 ---------------LWA-------------GGLELVRLMPALGLDYDHFTLSALLRACA 198
                           W               GL+L   M   GL+   +  +  + +C+
Sbjct: 362 EANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCS 421

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            L + + G+Q+H+ +I+    LG+D  +   ++LI MY +CGLV  A  VF    +    
Sbjct: 422 VLGSLDNGQQLHSQIIQ----LGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPY---- 473

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               D V W +M+    ++G+  + I+LYE ML     PD + F+T++SACSH G VK G
Sbjct: 474 ---VDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEG 530

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             YF+ M   Y + P  +HYS L+DLLCRAG   +A K + E +    G+    +W ALL
Sbjct: 531 RHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEA-KNVTESMPFEPGA---PIWEALL 586

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           + C   G  ELG  AA + LEL P   G Y+ LSN+YA    WDE+ ++R+LM+E+G+KK
Sbjct: 587 AGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKK 646

Query: 437 DVGCSWIEV 445
           + GCSWIEV
Sbjct: 647 EPGCSWIEV 655



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 173/416 (41%), Gaps = 93/416 (22%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG-KQ 107
           R+ + +N +I+ F  +     AL+ F  M   G   D +   S L A + + D     +Q
Sbjct: 93  RDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQ 152

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKL---------LLIHDAELMFDEIP---------- 148
           +   V K G LS   V +AL+  Y            +L+  A  +FDE P          
Sbjct: 153 LHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWT 212

Query: 149 ------VKN-----------------SVCANALLSGYCEAKLWAGGLELVRLMPALGLDY 185
                 V+N                 +V  NA++SGY     +    +L+R M +LG+  
Sbjct: 213 TIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQL 272

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM--QSSLIEMYGKCGLVTKA 243
           D +T ++++ A +       GRQVHAY++R          +   ++LI +Y +CG + +A
Sbjct: 273 DEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEA 332

Query: 244 LQVFN-----------------LAGHRLEGEIN--------KDVVLWTSMLGVYGRNGYF 278
            +VF+                 +   R+E E N        + ++ WT M+    +NG+ 
Sbjct: 333 RRVFDKMPVKDLVSWNAILSGCVNARRIE-EANSIFREMPVRSLLTWTVMISGLAQNGFG 391

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV---HDYKLEPGPEH 335
           +E +KL+  M + G +P + A+   I++CS  G +  G +    ++   HD  L  G   
Sbjct: 392 EEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVG--- 448

Query: 336 YSCLVDLLCRAGELDKA--------------WK-LINEMLDRGHGSSSVSMWGALL 376
            + L+ +  R G ++ A              W  +I  +   GHG  ++ ++  +L
Sbjct: 449 -NALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKML 503



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 141/355 (39%), Gaps = 79/355 (22%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP--------------- 148
           F + V AH+  SG+     + + LID Y K   I  A  +FD+IP               
Sbjct: 14  FARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYS 73

Query: 149 ------------------VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
                             ++++V  NA+++ +  +      L+L   M  LG   D FT 
Sbjct: 74  AAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTF 133

Query: 191 SALLRACAGLSAAEFG-RQVH-------AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           S++L A + ++  E   +Q+H       A  +    N     ++  +   +   C L+  
Sbjct: 134 SSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAA 193

Query: 243 ALQVFNLA--GHR------------------------LEGEINKDVVLWTSMLGVYGRNG 276
           A ++F+ A  G R                        LEG  +   V W +M+  Y   G
Sbjct: 194 ARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRG 253

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
           +++E   L   M   G + DE  + +VISA S+ G   +G +   +++       G  H+
Sbjct: 254 FYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSG--HF 311

Query: 337 -----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
                + L+ L  R G+L +A ++ ++M  +      +  W A+LS C +  + E
Sbjct: 312 VLSVNNALITLYTRCGKLVEARRVFDKMPVK-----DLVSWNAILSGCVNARRIE 361



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 103/217 (47%), Gaps = 1/217 (0%)

Query: 30  CRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYAL 89
           C + + +    +  + +  R+ L + V+IS   +NG     LK F+ M + G+    YA 
Sbjct: 354 CVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAY 413

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
             ++ + + +     G+Q+ + + + G  SS+ VG+ALI +Y++  L+  A+ +F  +P 
Sbjct: 414 AGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPY 473

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
            +SV  NA+++   +       ++L   M    +  D  T   +L AC+     + GR  
Sbjct: 474 VDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHY 533

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
              M R C  +  +    S LI++  + G+ ++A  V
Sbjct: 534 FDTM-RVCYGITPEEDHYSRLIDLLCRAGMFSEAKNV 569


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 238/446 (53%), Gaps = 19/446 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VH +  +TG   I      + L+  Y+ C   ++   +    + +  +N + +  +I+ +
Sbjct: 319 VHGYSVKTGF--ISQTSLANVLLDMYSNCSDWRSTNKI---FRNMVQKNVVSWTAMITSY 373

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            R G        F  M + G   D +A+ S+L A    +  + GK V  +  ++G    +
Sbjct: 374 TRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVL 433

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            V +AL+++Y K   + +A+L+FD +  K+ +  N L+ GY    L      L   M  L
Sbjct: 434 AVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEM-LL 492

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            L  +  T++ +L A A LS+ E GR++HAY +R+      D F+ ++LI+MY KCG + 
Sbjct: 493 QLRPNAVTMTCILPAAASLSSLERGREMHAYALRR--GYLEDDFVANALIDMYVKCGALL 550

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A ++F+    RL    NK+++ WT M+  YG +G  ++ I L+E M ++G  PD  +F 
Sbjct: 551 LARRLFD----RLS---NKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFS 603

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            ++ ACSH+G    G  +F+ M  ++K+EP  +HY+C+VDLL   G L +A++ I+ M  
Sbjct: 604 AILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPI 663

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
                   S+W +LL  C      +L +  A++  EL+P N G YV+L+N+YA+   W+ 
Sbjct: 664 ----EPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEA 719

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
           + +L+  +  +GL+++ GCSWIE  G
Sbjct: 720 VRKLKNKIGGRGLRENTGCSWIEAKG 745



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 29/347 (8%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLP----FNVVISDFCRNGSPLYALKT 73
           +   +L+L Y  C      G L N  +  +    +     +  ++S + + G     +  
Sbjct: 130 VLGQKLVLMYLKC------GDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLL 183

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  MH  G+  D Y +   L     +     G+ V   + K G+ S   VG+AL+  YAK
Sbjct: 184 FRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAK 243

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
                DA L+FD +P ++ +  N+++SG     L+   +EL   M   G + D  TL ++
Sbjct: 244 SNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSV 303

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA L     GR VH Y ++      +   + + L++MY  C       ++F      
Sbjct: 304 LPACAELHLLFLGRVVHGYSVK--TGFISQTSLANVLLDMYSNCSDWRSTNKIF------ 355

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
               + K+VV WT+M+  Y R G + +V  L++ M + GT+PD  A  + + A +    +
Sbjct: 356 -RNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELL 414

Query: 314 KLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLI 356
           K G       VH Y +  G E      + L+++  + G +++A KLI
Sbjct: 415 KHGKS-----VHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEA-KLI 455



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 13/146 (8%)

Query: 177 LMPALGL----DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC--NLGNDVFMQSSL 230
           L  ALGL      D  +  A+L+ C+ + + E G++ H +++R       G D  +   L
Sbjct: 77  LEEALGLLGSDGVDDRSYGAVLQLCSEVRSLEGGKRAH-FLVRASSLGRDGMDNVLGQKL 135

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           + MY KCG +  A +VF+      E     DV +WT+++  Y + G  +E + L+  M  
Sbjct: 136 VLMYLKCGDLENARRVFD------EMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHC 189

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLG 316
            G +PD      V+   +  G ++ G
Sbjct: 190 CGVRPDAYTISCVLKCIAGLGSIEDG 215


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 145/427 (33%), Positives = 223/427 (52%), Gaps = 49/427 (11%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +IS +   G    AL+    M   GI LD +   S + A  +    + GKQV A+
Sbjct: 252 VAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAY 311

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC------EA 165
           V +    S  F  S L+ LY K     +A  +F+++P K+ V  NALLSGY       EA
Sbjct: 312 VLRREDFSFHFDNS-LVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEA 370

Query: 166 KL------------W-------------AGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
           KL            W               GL+L   M   G +   +  S  +++CA L
Sbjct: 371 KLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVL 430

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQS--SLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            A   G+Q HA +++    +G D  + +  +LI MY KCG+V +A QVF           
Sbjct: 431 GAYCNGQQYHAQLLK----IGFDSSLSAGNALITMYAKCGVVEEARQVFRTMP------- 479

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
             D V W +++   G++G+  E + +YE ML  G +PD +  +TV++ACSH G V  G +
Sbjct: 480 CLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRK 539

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           YF+ M   Y++ PG +HY+ L+DLLCR+G+   A  +I  +  +     +  +W ALLS 
Sbjct: 540 YFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFK----PTAEIWEALLSG 595

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           C   G  ELG +AA K   L P + G Y++LSN++A    W+E+ ++R+LM+++G+KK+V
Sbjct: 596 CRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEV 655

Query: 439 GCSWIEV 445
            CSWIE+
Sbjct: 656 ACSWIEM 662



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 167/396 (42%), Gaps = 80/396 (20%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV-KDARFGKQ 107
           R+ + +N +I+ F  N     A+  F  M   G   D +   S L     V  D +   Q
Sbjct: 111 RDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQ 170

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLL----LIHDAELMFDEIPVKNS----------- 152
             A   KSG      V +AL+ +Y+K      L+H A  +FDEI  K+            
Sbjct: 171 FHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYV 230

Query: 153 ---------------------VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191
                                V  NA++SGY     +   LE+VR M + G++ D FT  
Sbjct: 231 KNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYP 290

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN--- 248
           +++RACA     + G+QVHAY++R+           +SL+ +Y KCG   +A  +F    
Sbjct: 291 SVIRACATAGLLQLGKQVHAYVLRR---EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMP 347

Query: 249 ----------LAGHRLEGEI-----------NKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
                     L+G+   G I            K+++ W  M+     NG+ +E +KL+  
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH---DYKLEPGPEHYSCLVDLLC 344
           M   G +P + AF   I +C+  G    G +Y   ++    D  L  G    + L+ +  
Sbjct: 408 MKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAG----NALITMYA 463

Query: 345 RAGELDKAWKLINEM--LDRGHGSSSVSMWGALLSA 378
           + G +++A ++   M  LD      SVS W AL++A
Sbjct: 464 KCGVVEEARQVFRTMPCLD------SVS-WNALIAA 492



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 137/349 (39%), Gaps = 50/349 (14%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           ++G      K +  +N L + ++IS    NG     LK FS M   G     YA   ++ 
Sbjct: 366 HIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIK 425

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           +   +     G+Q  A + K G+ SS+  G+ALI +YAK  ++ +A  +F  +P  +SV 
Sbjct: 426 SCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVS 485

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            NAL++   +    A  +++   M   G+  D  TL  +L AC+     + GR+    M 
Sbjct: 486 WNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSM- 544

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
                                         ++   A H            +  ++ +  R
Sbjct: 545 --------------------------ETVYRIPPGADH------------YARLIDLLCR 566

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +G F +   + E++     KP    +  ++S C   G ++LGI     +  D      PE
Sbjct: 567 SGKFSDAESVIESLPF---KPTAEIWEALLSGCRVHGNMELGI-----IAADKLFGLIPE 618

Query: 335 H---YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           H   Y  L ++    G+ ++  ++   M DRG        W  + +  H
Sbjct: 619 HDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVH 667



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 166/399 (41%), Gaps = 81/399 (20%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI--------------- 147
           +  + V  ++   G+     + + LID+Y K   ++ A  +FDEI               
Sbjct: 31  QLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGY 90

Query: 148 ----------------PV--KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
                           PV  +++V  NA+++G+         + L   M   G   D+FT
Sbjct: 91  CASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFT 150

Query: 190 LSALLRACAGLSAAEFG-RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG----LVTKAL 244
            +++L   A ++  E    Q HA  ++     G    + ++L+ +Y KC     L+  A 
Sbjct: 151 FASVLAGLALVADDEKQCVQFHAAALKS--GAGYITSVSNALVSVYSKCASSPSLLHSAR 208

Query: 245 QV------------------------FNLAGHRLEG-EINKDVVLWTSMLGVYGRNGYFK 279
           +V                        F+L    LEG + N  +V + +M+  Y   G+++
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL--EPGPEHY- 336
           E +++   M+ +G + DE  + +VI AC+  G ++LG +     VH Y L  E    H+ 
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQ-----VHAYVLRREDFSFHFD 323

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
           + LV L  + G+ D+A  +  +M      +  +  W ALLS     G     KL  +   
Sbjct: 324 NSLVSLYYKCGKFDEARAIFEKM-----PAKDLVSWNALLSGYVSSGHIGEAKLIFK--- 375

Query: 397 ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           E+   N+  ++++ +  A+    +E  +L   MK +G +
Sbjct: 376 EMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 146/415 (35%), Positives = 225/415 (54%), Gaps = 21/415 (5%)

Query: 37   GTLTNCLKFLN--PR-NPLPFNVVISDFCRN-GSPLYALKTFSFMHVHGIFLDTYALCSS 92
            G  T CLK  +  P  + + +N VI     +  S   A+K F  M   G  L      + 
Sbjct: 1010 GCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINI 1069

Query: 93   LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKN 151
            L+A +S+       Q+ A V K        +G+AL+  Y K   +++ E +F  +   ++
Sbjct: 1070 LSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRD 1129

Query: 152  SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
             V  N+++SGY   +L    ++LV  M   G   D FT + +L ACA ++  E G +VHA
Sbjct: 1130 EVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHA 1189

Query: 212  YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
              IR C  + +DV + S+L++MY KCG +  A + F L   R       +V  W SM+  
Sbjct: 1190 CGIRAC--MESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-------NVYSWNSMISG 1240

Query: 272  YGRNGYFKEVIKLYEAMLMNGTKPDEVA-FVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y R+G+ ++ +KL+  M+++G  PD VA  + V+SACSH G V+ G E+F+ M   Y+L 
Sbjct: 1241 YARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLS 1300

Query: 331  PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELG 388
            P  EH+SC+VDLL RAG+LD+    IN M  +     +V +W  +L AC   +    ELG
Sbjct: 1301 PRVEHFSCMVDLLGRAGKLDEVGDFINSMPMK----PNVLIWRTVLGACCRANGRNTELG 1356

Query: 389  KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
            + AA+  LEL+P N   YV+L+N+YA    W+++ + R  MKE  +KK+ GCSW+
Sbjct: 1357 RRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWV 1411



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 140/281 (49%), Gaps = 25/281 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL----DTYALCSSLTASTSVKDARF 104
           RN + +N +IS + R G  + A   FS M   G+      + Y   S +TA+ S  D  F
Sbjct: 712 RNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVD--F 769

Query: 105 G----KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           G    +Q+ A V KSG+L  ++VGSAL+  +A+  L  DA+ +F+++ V+N V  N L+ 
Sbjct: 770 GLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMV 829

Query: 161 GYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAE----FGRQVHAYMIR 215
           G  + K      ++   M  L G++ D + +  LL A +  S  E     GR+VHA++IR
Sbjct: 830 GLVKQKQGEAAAKVFHEMKDLVGINSDSYVV--LLSAFSEFSVLEEGRRKGREVHAHVIR 887

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
              N  N V + + L+ MY K G +  A  VF L        + KD V W S++    +N
Sbjct: 888 TGLN-DNKVAIGNGLVNMYAKSGAIADACSVFELM-------VEKDSVSWNSLISGLDQN 939

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              ++  + +  M   G+ P     ++ +S+C+  G + LG
Sbjct: 940 ECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLG 980



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 150/331 (45%), Gaps = 34/331 (10%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            +++     K G++ ++F+ + LI++Y ++  +  A+ +FDE+  +N V    L+SGY +
Sbjct: 563 ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 622

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRAC--AGLSAAEFGRQVHAYMIRKCCNLGN 222
                      R M   G   +H+   + LRAC  +G S  + G Q+H  + +     G+
Sbjct: 623 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISK--TRYGS 680

Query: 223 DVFMQSSLIEMYGKC-GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           DV + + LI MYG C      A  VF+  G R       + + W S++ VY R G     
Sbjct: 681 DVVVCNVLISMYGSCLDSANDARSVFDRIGIR-------NSISWNSIISVYSRRGDXVSA 733

Query: 282 IKLYEAMLMNGT----KPDEVAFVTVIS-ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
             L+ +M   G     KP+E  F ++I+ ACS    V  G+   E M+   +     +  
Sbjct: 734 YDLFSSMQKEGLGFSFKPNEYTFGSLITAACS---SVDFGLCVLEQMLARVEKSGFLQDL 790

Query: 337 ---SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
              S LV    R G  D A  +  +M  R    + VSM G ++       K + G+ AA+
Sbjct: 791 YVGSALVSGFARFGLTDDAKNIFEQMGVR----NVVSMNGLMVGLV----KQKQGEAAAK 842

Query: 394 KALELDP---HNVGIYVMLSNLYAKFCMWDE 421
              E+      N   YV+L + +++F + +E
Sbjct: 843 VFHEMKDLVGINSDSYVVLLSAFSEFSVLEE 873



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 14/273 (5%)

Query: 41   NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH-VHGIFLDTYALCSSLTASTSV 99
            N  + +  RN +  N ++    +      A K F  M  + GI  D+Y +  S  +  SV
Sbjct: 811  NIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSV 870

Query: 100  --KDARFGKQVQAHVTKSGWLSS-VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
              +  R G++V AHV ++G   + V +G+ L+++YAK   I DA  +F+ +  K+SV  N
Sbjct: 871  LEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWN 930

Query: 157  ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
            +L+SG  + +      E    M   G    +FTL + L +CA L     G Q+H   ++ 
Sbjct: 931  SLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLK- 989

Query: 217  CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN- 275
               L  DV + ++L+ +Y + G  T+ L+VF+L           D V W S++G    + 
Sbjct: 990  -LGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEY-------DQVSWNSVIGALSDSE 1041

Query: 276  GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                + +K +  M+  G     V F+ ++SA S
Sbjct: 1042 ASVSQAVKYFLEMMRGGWGLSRVTFINILSAVS 1074



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 11/228 (4%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +LG+       ++ RN + +  +IS + +NG P  A   F  M   G   + YA  S+L 
Sbjct: 594 DLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALR 653

Query: 95  A--STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL-LIHDAELMFDEIPVKN 151
           A   +     + G Q+   ++K+ + S V V + LI +Y   L   +DA  +FD I ++N
Sbjct: 654 ACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRN 713

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDY----DHFTLSALLRACAGLSAAEFGR 207
           S+  N+++S Y          +L   M   GL +    + +T  +L+   A  S+ +FG 
Sbjct: 714 SISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLI--TAACSSVDFGL 771

Query: 208 QVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
            V   M+ +    G   D+++ S+L+  + + GL   A  +F   G R
Sbjct: 772 CVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVR 819


>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 556

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 200/362 (55%), Gaps = 13/362 (3%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           LD  +  S  +A  +  +  FGKQV     K G  + V++ ++L D+Y K  L +D   +
Sbjct: 82  LDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKL 141

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           F     ++ V  N ++  Y     +        +M   G   D  + S++L +CA L+A 
Sbjct: 142 FSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAAL 201

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
             G  +H  +IR       ++ + SSLI MY KCG +  A Q+F       E   +++VV
Sbjct: 202 YQGTLIHNQIIRS--GFVKNLRVASSLITMYAKCGSLVDAFQIF-------EETEDRNVV 252

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            WT+++    ++G+   V++L+E ML  G KPD + FV+V+SACSHTG+V+ G  YF  M
Sbjct: 253 CWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSM 312

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           +  + + PG EHY+C+VDLL RAGELD+A + I  M  +       S+WGALLSAC +  
Sbjct: 313 IKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIK----PDASVWGALLSACRNHS 368

Query: 384 KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
              +GK  A K  +L+P N G YV+L N+  +  M +E  ++R  M+  G++K+ GCSWI
Sbjct: 369 NLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWI 428

Query: 444 EV 445
           ++
Sbjct: 429 DI 430



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 147/311 (47%), Gaps = 50/311 (16%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G++ + Y   + L+A T    +  G+Q+ + V K G+L+ VFV SAL+D+YAK   
Sbjct: 1   MRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCD 60

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  AE +F+E+P                         L+  + AL    D  + S++  A
Sbjct: 61  MLMAEKVFEEMPTL-----------------------LLENLTAL----DEVSFSSVFSA 93

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA     EFG+QVH   ++    + N V++ +SL +MYGKCGL     ++F+  G R   
Sbjct: 94  CANAGNLEFGKQVHGVALK--LGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGAR--- 148

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               DVV W  M+  Y  N  +++    +  M   G+ PDE ++ +V+ +C++   +  G
Sbjct: 149 ----DVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQG 204

Query: 317 IEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
                 ++H+  +  G        S L+ +  + G L  A+++  E  DR     +V  W
Sbjct: 205 T-----LIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDR-----NVVCW 254

Query: 373 GALLSACHDCG 383
            A+++AC   G
Sbjct: 255 TAIIAACQQHG 265



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 135/317 (42%), Gaps = 48/317 (15%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N++I  +  N +   A  +F  M   G   D  +  S L +  ++     G  +
Sbjct: 148 RDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLI 207

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + +SG++ ++ V S+LI +YAK   + DA  +F+E   +N VC  A+++  C+    
Sbjct: 208 HNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAA-CQQHGH 266

Query: 169 AGG-LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           A   +EL   M   G+  D+ T  ++L AC+     E G                  F  
Sbjct: 267 ANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEG-----------------FFYF 309

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +S+I+++G               GH            +  ++ +  R G      +  E 
Sbjct: 310 NSMIKVHGI------------YPGHE----------HYACIVDLLSRAGELDRAKRFIEL 347

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRA 346
           M +   KPD   +  ++SAC +   + +G E     +  + LEP  P +Y  L ++L R 
Sbjct: 348 MPI---KPDASVWGALLSACRNHSNLIMGKEV---ALKLFDLEPDNPGNYVLLCNILTRN 401

Query: 347 GELDKAWKLINEMLDRG 363
           G L++A ++  +M   G
Sbjct: 402 GMLNEADEVRRKMESIG 418


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 216/400 (54%), Gaps = 13/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS + ++G    A+  F  M    +  +   +   L+A    +    GK +
Sbjct: 226 KDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWI 285

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + V  +G+ S++ + +ALID+Y K      A  +FD I  K+ +  N ++ GY    L+
Sbjct: 286 GSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLY 345

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L  +M    +  +  T   +L ACA L A + G+ VHAY+ +   N  N   + +
Sbjct: 346 EEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSN-ASLWT 404

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A +VF     R       ++  W +ML  +  +G+ +  + L+  M
Sbjct: 405 SLIDMYAKCGCIEAAERVFRSMHSR-------NLASWNAMLSGFAMHGHAERALALFSEM 457

Query: 289 LMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           +  G  +PD++ FV V+SAC+  G V LG +YF  M+ DY + P  +HY C++DLL RA 
Sbjct: 458 VNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAE 517

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           + ++A  L+  M     G+    +WG+LLSAC   G+ E G+  A++  +L+P N G +V
Sbjct: 518 KFEEAEILMKNMEMEPDGA----IWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFV 573

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+YA    WD++ ++R  + +KG+KK  GC+ IE+ G
Sbjct: 574 LLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDG 613



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 155/333 (46%), Gaps = 45/333 (13%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY----- 131
           M  +G+  +++       + T  K    GKQ+ AH  K     +  V +++I +Y     
Sbjct: 122 MLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGE 181

Query: 132 ---AKLLL-----------------------IHDAELMFDEIPVKNSVCANALLSGYCEA 165
              A+L+                        + DA  +FDEIPVK+ V  NA++SGY ++
Sbjct: 182 MDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQS 241

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +   +     M    +  +  T+  +L AC    + E G+ + +++  +    G+++ 
Sbjct: 242 GRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWV--RDNGFGSNLQ 299

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI+MY KCG    A ++F       +G   KDV+ W +M+G Y     ++E + L+
Sbjct: 300 LTNALIDMYCKCGETDIARELF-------DGIEEKDVISWNTMIGGYSYLSLYEEALALF 352

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E ML +  KP++V F+ ++ AC+  G + LG     ++  + +       ++ L+D+  +
Sbjct: 353 EVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAK 412

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            G ++ A ++   M  R     +++ W A+LS 
Sbjct: 413 CGCIEAAERVFRSMHSR-----NLASWNAMLSG 440



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 123/290 (42%), Gaps = 40/290 (13%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALI---------DLYAKLLLIHDAELMFDEIPVKNSVCAN 156
           KQ+ + + K+G  ++VFV S LI         DL   L L  + +         N    N
Sbjct: 45  KQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKH----NVFIWN 100

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           +L+ GY  +      L L   M   G+  +  T   L ++C    A   G+Q+HA+ ++ 
Sbjct: 101 SLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKL 160

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA-----------------------GHR 253
             +    V   +S+I MY   G +  A  VF+ +                         R
Sbjct: 161 ALHFNPHV--HTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARR 218

Query: 254 LEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
           L  EI  KDVV W +M+  Y ++G F+E I  +  M      P++   V V+SAC HT  
Sbjct: 219 LFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRS 278

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
            +LG     W V D       +  + L+D+ C+ GE D A +L + + ++
Sbjct: 279 GELGKWIGSW-VRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEK 327


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 218/397 (54%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I+ + +      AL TF  M   GI  D   L ++++A   ++  + G+Q+
Sbjct: 514 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 573

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A    SG+ S +   +AL+ LY++   I ++ L F++    +++  NAL+SG+ ++   
Sbjct: 574 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 633

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L +   M   G+D ++FT  + ++A +  +  + G+QVHA + +   +   +V   +
Sbjct: 634 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVC--N 691

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI MY KCG ++ A + F      LE    K+ V W +++  Y ++G+  E +  ++ M
Sbjct: 692 ALISMYAKCGSISDAEKQF------LEVS-TKNEVSWNAIINAYSKHGFGSEALDSFDQM 744

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           + +  +P+ V  V V+SACSH G V  GI YFE M  +Y L P PEHY C+VD+L RAG 
Sbjct: 745 IHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGL 804

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A + I EM  +        +W  LLSAC      E+G+ AA   LEL+P +   YV+
Sbjct: 805 LSRAKEFIQEMPIK----PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVL 860

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSNLYA    WD     R+ MKEKG+KK+ G SWIEV
Sbjct: 861 LSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV 897



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 161/324 (49%), Gaps = 21/324 (6%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS   +N     A++ F  M+V GI    YA  S L+A   ++    G+Q+   V K G
Sbjct: 219 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 278

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           + S  +V +AL+ LY  L  +  AE +F  +  +++V  N L++G  +       +EL +
Sbjct: 279 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 338

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M   GL+ D  TL++L+ AC+       G+Q+HAY  +      ++  ++ +L+ +Y K
Sbjct: 339 RMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTK--LGFASNNKIEGALLNLYAK 396

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           C  +  AL  F      LE E+ ++VVLW  ML  YG     +   +++  M +    P+
Sbjct: 397 CADIETALDYF------LETEV-ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 449

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSC--LVDLLCRAGELDKAW 353
           +  + +++  C   G ++LG +    ++  +++L      Y C  L+D+  + G+LD AW
Sbjct: 450 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVLIDMYAKLGKLDTAW 505

Query: 354 KLINEMLDRGHGSSSVSMWGALLS 377
               ++L R  G   VS W  +++
Sbjct: 506 ----DILIRFAGKDVVS-WTTMIA 524



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 164/360 (45%), Gaps = 25/360 (6%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           H  NL +  +    ++ R+ + +N +I+   + G    A++ F  MH+ G+  D+  L S
Sbjct: 295 HLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS 354

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            + A ++      G+Q+ A+ TK G+ S+  +  AL++LYAK   I  A   F E  V+N
Sbjct: 355 LVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVEN 414

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N +L  Y           + R M    +  + +T  ++L+ C  L   E G Q+H+
Sbjct: 415 VVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHS 474

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLG 270
            +I+   N   + ++ S LI+MY K G +  A  +    AG        KDVV WT+M+ 
Sbjct: 475 QIIK--TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG--------KDVVSWTTMIA 524

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y +  +  + +  +  ML  G + DEV     +SAC+    +K G +     +H     
Sbjct: 525 GYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-----IHAQACV 579

Query: 331 PGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            G        + LV L  R G++++++ L  E  + G   +    W AL+S     G  E
Sbjct: 580 SGFSSDLPFQNALVTLYSRCGKIEESY-LAFEQTEAGDNIA----WNALVSGFQQSGNNE 634



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 105/211 (49%), Gaps = 9/211 (4%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ A +   G   S  V + LIDLY++   +  A  +FD + +K+     A++SG  + 
Sbjct: 167 EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKN 226

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +  A  + L   M  LG+    +  S++L AC  + + E G Q+H  +++      +D +
Sbjct: 227 ECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK--LGFSSDTY 284

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L+ +Y   G +  A  +F+    R       D V + +++    + GY ++ ++L+
Sbjct: 285 VCNALVSLYFHLGNLISAEHIFSNMSQR-------DAVTYNTLINGLSQCGYGEKAMELF 337

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           + M ++G +PD     +++ ACS  G +  G
Sbjct: 338 KRMHLDGLEPDSNTLASLVVACSADGTLFRG 368



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 27/297 (9%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+++ + + K G  S+  +   L D Y     ++ A  +FDE+P +     N ++     
Sbjct: 64  GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 123

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGND 223
             L      L   M +  +  +  T S +L AC G S A +   Q+HA ++ +   L + 
Sbjct: 124 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQ--GLRDS 181

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
             + + LI++Y + G V  A +VF+  G RL     KD   W +M+    +N    E I+
Sbjct: 182 TVVCNPLIDLYSRNGFVDLARRVFD--GLRL-----KDHSSWVAMISGLSKNECEAEAIR 234

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVD 341
           L+  M + G  P   AF +V+SAC     +++G E    +V   KL    + Y C  LV 
Sbjct: 235 LFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLV--LKLGFSSDTYVCNALVS 291

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           L    G L  A  + + M  R         +  L++    CG         +KA+EL
Sbjct: 292 LYFHLGNLISAEHIFSNMSQR-----DAVTYNTLINGLSQCG-------YGEKAMEL 336



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 23/201 (11%)

Query: 182 GLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
           G+  +H TL  LL  C   + + + GR++H+ +++    L ++  +   L + Y   G +
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK--LGLDSNGCLSEKLFDFYLFKGDL 96

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A +VF+    R        +  W  M+          EV  L+  M+     P+E  F
Sbjct: 97  YGAFKVFDEMPERT-------IFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 149

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKLI 356
             V+ AC   G V   +      +H   L  G    +     L+DL  R G +D A ++ 
Sbjct: 150 SGVLEAC-RGGSVAFDVVE---QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVF 205

Query: 357 NEMLDRGHGSSSVSMWGALLS 377
           + +  + H S     W A++S
Sbjct: 206 DGLRLKDHSS-----WVAMIS 221


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/398 (34%), Positives = 217/398 (54%), Gaps = 18/398 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +  +I    +NG    A   FS M   G+  +     + LT    V +A F  Q+
Sbjct: 323 QNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT----VSEASFPPQI 378

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V K+ +  +  VG+AL+  Y+KL    +A  +F  I  K+ V  +A+L+ Y +A   
Sbjct: 379 HAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDC 438

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQ 227
            G       M   GL  + FT+S+ + ACA  +A  + GRQ HA  I+  C+  + + + 
Sbjct: 439 NGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCH--DALCVS 496

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+L+ MY + G +  A  VF       E + ++D++ W SML  Y ++GY ++ + ++  
Sbjct: 497 SALVSMYARKGSIENAQCVF-------ERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQ 549

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M + G   D + F++VI  C+H G V+ G +YF+ MV DY + P  +HY+C+VDL  RAG
Sbjct: 550 MEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAG 609

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           +LD+   LI  M       +  ++W ALL AC      ELGKLAA+K L L+P +   YV
Sbjct: 610 KLDETMSLIEGM----PFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYV 665

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+Y+    W E  ++R+LM  K ++K+ GCSWI++
Sbjct: 666 LLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQI 703



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 156/327 (47%), Gaps = 27/327 (8%)

Query: 98  SVKDARFGKQVQAHVTKSGW-LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
           SV D   GKQ+ A   + G     + VG++L+D+Y     + D   +F+ +  +N V   
Sbjct: 67  SVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWT 126

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR- 215
           +LL+GY +A +    + L   M A G+  + FT S++L   A     + G+ VHA  I+ 
Sbjct: 127 SLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKF 186

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
            CC+    VF+ +SL+ MY KCGLV +A  VF     R+E    +D+V W +++     N
Sbjct: 187 GCCST---VFVCNSLMNMYAKCGLVEEARVVFC----RME---TRDMVSWNTLMAGLVLN 236

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G   E ++L+     + T   E  + TVI+ C++   + L  +     +H   L+ G   
Sbjct: 237 GRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQ-----LHSSVLKHGFHS 291

Query: 336 Y----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
           Y    + L+D   +AG+LDKA  +   M     GS +V  W A++  C   G   L    
Sbjct: 292 YGNVMTALMDAYNKAGQLDKALDVFLLM----SGSQNVVSWTAMIDGCIQNGDIPLAAAL 347

Query: 392 AQKALE--LDPHNVGIYVMLSNLYAKF 416
             +  E  + P+++    +L+   A F
Sbjct: 348 FSRMREDGVAPNDLTYSTILTVSEASF 374



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 125/257 (48%), Gaps = 8/257 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +++ + + G  L  +  F  M   G++ + +   S L+   S      G+ V
Sbjct: 120 RNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHV 179

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K G  S+VFV ++L+++YAK  L+ +A ++F  +  ++ V  N L++G       
Sbjct: 180 HAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRD 239

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L     +        T S ++  CA L      RQ+H+ +++   +   +V   +
Sbjct: 240 LEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVM--T 297

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++ Y K G + KAL VF L    + G  +++VV WT+M+    +NG       L+  M
Sbjct: 298 ALMDAYNKAGQLDKALDVFLL----MSG--SQNVVSWTAMIDGCIQNGDIPLAAALFSRM 351

Query: 289 LMNGTKPDEVAFVTVIS 305
             +G  P+++ + T+++
Sbjct: 352 REDGVAPNDLTYSTILT 368


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 146/404 (36%), Positives = 213/404 (52%), Gaps = 23/404 (5%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + ++  IS + + G    AL     M   GI  +   L S L+   SV     GK++  +
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 112 -------VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSVCANALLSGY 162
                  + K+G      V + LID+YAK   +  A  MFD +  K  + V    ++ GY
Sbjct: 391 AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 163 CEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            +       LEL+  M         + FT+S  L ACA L+A   G+Q+HAY +R   N 
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQN- 509

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
              +F+ + LI+MY KCG ++ A  VF       +  + K+ V WTS++  YG +GY +E
Sbjct: 510 AVPLFVSNCLIDMYAKCGSISDARLVF-------DNMMAKNEVTWTSLMTGYGMHGYGEE 562

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            + +++ M   G K D V  + V+ ACSH+G +  G+EYF  M   + + PGPEHY+CLV
Sbjct: 563 ALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLV 622

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RAG L+ A +LI EM           +W A LS C   GK ELG+ AA+K  EL  
Sbjct: 623 DLLGRAGRLNAALRLIEEM----PMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELAS 678

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           ++ G Y +LSNLYA    W ++ ++R LM+ KG+KK  GCSW+E
Sbjct: 679 NHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 171/380 (45%), Gaps = 47/380 (12%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I  +  NG     L  F  MH      D Y       A   +   R G+   A   
Sbjct: 95  WNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSL 154

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            +G++S+VFVG+AL+ +Y++   + DA  +FDE+ V + V  N+++  Y +       LE
Sbjct: 155 VTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALE 214

Query: 174 LV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           +  R+    G   D+ TL  +L  CA L     G+Q+H + +     +  ++F+ + L++
Sbjct: 215 MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTS--EMIQNMFVGNCLVD 272

Query: 233 MYGKCGLVTKALQVFN-------------LAGH----------RL-----EGEINKDVVL 264
           MY KCG++ +A  VF+             +AG+          RL     E +I  DVV 
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT 332

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY----F 320
           W++ +  Y + G   E + +   ML +G KP+EV  ++V+S C+  G +  G E      
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392

Query: 321 EWMVHDYKLEPGPEH--YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           ++ +   K   G E+   + L+D+  +  ++D A  + + +  +      V  W  ++  
Sbjct: 393 KYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPK---ERDVVTWTVMIGG 449

Query: 379 CHDCGKFELGKLAAQKALEL 398
               G        A KALEL
Sbjct: 450 YSQHGD-------ANKALEL 462


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 226/444 (50%), Gaps = 48/444 (10%)

Query: 36  LGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           LG L    + L+    RN + +  +++   + G+   A+  +S M   G   +     S 
Sbjct: 325 LGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSV 384

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L A  S++D R G+++     K    ++VFV SALID+Y K   + DA+++F  +P KN 
Sbjct: 385 LGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNI 444

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPAL------------------------------- 181
           VC N+L+SGY          EL + MPA                                
Sbjct: 445 VCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLAS 504

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G      T S++L ACA L + E G+ VHA +I+    +   +F+ ++L +MY K G + 
Sbjct: 505 GQSPGEITFSSVLLACASLCSLEMGKMVHAKIIK--LGIKESIFVGTALSDMYAKSGDLD 562

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            + +VF     R       + V WT+M+     NG+ +E I L+E M+  G  P+E  F+
Sbjct: 563 SSKRVFYEMPKR-------NDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFL 615

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            ++ ACSH+G V+  + YFE M+    + P  +HY+C+VD+L RAG L +A  L+ ++  
Sbjct: 616 AILFACSHSGLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIES 674

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +   +S    W ALLSAC+     E+G+ AA++  ELD  N   YV+LSN+YA    W +
Sbjct: 675 KSEANS----WAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKD 730

Query: 422 IGQLRELMKEKGLKKDVGCSWIEV 445
             ++R LMK   LKKD GCSW+++
Sbjct: 731 AAEMRILMKGINLKKDGGCSWVQI 754



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 55/294 (18%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           SV   + ++D   K   + DA  ++ + P+ +     A+++G+   +L    L +   M 
Sbjct: 178 SVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEML 237

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL-GNDVFMQSSLIEMYGKCG 238
           + G+  +  TL ++++AC G  A EF   +    +    NL   ++ +++SLI +Y + G
Sbjct: 238 SCGVSPNEITLVSVIKACIG--AGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKG 295

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG-----------------RN------ 275
               A ++F+      E E+ +DVV WT++L VY                  RN      
Sbjct: 296 DADAARRMFD------EMEV-RDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGT 348

Query: 276 --------GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
                   G  KE + LY  ML +G +P+   F +V+ AC+    ++ G +     +H+ 
Sbjct: 349 LVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK-----IHNQ 403

Query: 328 KLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            L+    +     S L+D+ C+  +L  A     +M+       ++  W +L+S
Sbjct: 404 TLKMACSNNVFVSSALIDMYCKCKQLPDA-----QMIFYSLPQKNIVCWNSLIS 452


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 218/397 (54%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I+ + +      AL TF  M   GI  D   L ++++A   ++  + G+Q+
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A    SG+ S +   +AL+ LY++   I ++ L F++    +++  NAL+SG+ ++   
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L +   M   G+D ++FT  + ++A +  +  + G+QVHA + +   +   +V   +
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVC--N 731

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI MY KCG ++ A + F      LE    K+ V W +++  Y ++G+  E +  ++ M
Sbjct: 732 ALISMYAKCGSISDAEKQF------LEVS-TKNEVSWNAIINAYSKHGFGSEALDSFDQM 784

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           + +  +P+ V  V V+SACSH G V  GI YFE M  +Y L P PEHY C+VD+L RAG 
Sbjct: 785 IHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGL 844

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A + I EM  +        +W  LLSAC      E+G+ AA   LEL+P +   YV+
Sbjct: 845 LSRAKEFIQEMPIK----PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVL 900

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSNLYA    WD     R+ MKEKG+KK+ G SWIEV
Sbjct: 901 LSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV 937



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 160/325 (49%), Gaps = 21/325 (6%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS   +N     A++ F  M+V GI    YA  S L+A   ++    G+Q+   V K G
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           + S  +V +AL+ LY  L  +  AE +F  +  +++V  N L++G  +       +EL +
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M   GL+ D  TL++L+ AC+       G+Q+HAY  +      N +  + +L+ +Y K
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKI--EGALLNLYAK 436

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           C  +  AL  F      LE E+ ++VVLW  ML  YG     +   +++  M +    P+
Sbjct: 437 CADIETALDYF------LETEV-ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSC--LVDLLCRAGELDKAW 353
           +  + +++  C   G ++LG +    ++  +++L      Y C  L+D+  + G+LD AW
Sbjct: 490 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVLIDMYAKLGKLDTAW 545

Query: 354 KLINEMLDRGHGSSSVSMWGALLSA 378
               ++L R  G   VS W  +++ 
Sbjct: 546 ----DILIRFAGKDVVS-WTTMIAG 565



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 164/360 (45%), Gaps = 25/360 (6%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           H  NL +  +    ++ R+ + +N +I+   + G    A++ F  MH+ G+  D+  L S
Sbjct: 335 HLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS 394

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            + A ++      G+Q+ A+ TK G+ S+  +  AL++LYAK   I  A   F E  V+N
Sbjct: 395 LVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVEN 454

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  N +L  Y           + R M    +  + +T  ++L+ C  L   E G Q+H+
Sbjct: 455 VVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHS 514

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLG 270
            +I+   N   + ++ S LI+MY K G +  A  +    AG        KDVV WT+M+ 
Sbjct: 515 QIIK--TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG--------KDVVSWTTMIA 564

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y +  +  + +  +  ML  G + DEV     +SAC+    +K G +     +H     
Sbjct: 565 GYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-----IHAQACV 619

Query: 331 PGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            G        + LV L  R G++++++ L  E  + G   +    W AL+S     G  E
Sbjct: 620 SGFSSDLPFQNALVTLYSRCGKIEESY-LAFEQTEAGDNIA----WNALVSGFQQSGNNE 674



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 105/211 (49%), Gaps = 9/211 (4%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ A +   G   S  V + LIDLY++   +  A  +FD + +K+     A++SG  + 
Sbjct: 207 EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKN 266

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +  A  + L   M  LG+    +  S++L AC  + + E G Q+H  +++      +D +
Sbjct: 267 ECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK--LGFSSDTY 324

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L+ +Y   G +  A  +F+    R       D V + +++    + GY ++ ++L+
Sbjct: 325 VCNALVSLYFHLGNLISAEHIFSNMSQR-------DAVTYNTLINGLSQCGYGEKAMELF 377

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           + M ++G +PD     +++ ACS  G +  G
Sbjct: 378 KRMHLDGLEPDSNTLASLVVACSADGTLFRG 408



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 27/297 (9%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+++ + + K G  S+  +   L D Y     ++ A  +FDE+P +     N ++     
Sbjct: 104 GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 163

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGND 223
             L      L   M +  +  +  T S +L AC G S A +   Q+HA ++ +   L + 
Sbjct: 164 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQ--GLRDS 221

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
             + + LI++Y + G V  A +VF+  G RL     KD   W +M+    +N    E I+
Sbjct: 222 TVVCNPLIDLYSRNGFVDLARRVFD--GLRL-----KDHSSWVAMISGLSKNECEAEAIR 274

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVD 341
           L+  M + G  P   AF +V+SAC     +++G E    +V   KL    + Y C  LV 
Sbjct: 275 LFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLV--LKLGFSSDTYVCNALVS 331

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           L    G L  A  + + M  R         +  L++    CG         +KA+EL
Sbjct: 332 LYFHLGNLISAEHIFSNMSQR-----DAVTYNTLINGLSQCG-------YGEKAMEL 376



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 23/202 (11%)

Query: 182 GLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
           G+  +H TL  LL  C   + + + GR++H+ +++    L ++  +   L + Y   G +
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK--LGLDSNGCLSEKLFDFYLFKGDL 136

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A +VF+    R        +  W  M+          EV  L+  M+     P+E  F
Sbjct: 137 YGAFKVFDEMPERT-------IFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 189

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKLI 356
             V+ AC   G V   +      +H   L  G    +     L+DL  R G +D A ++ 
Sbjct: 190 SGVLEAC-RGGSVAFDVVE---QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVF 245

Query: 357 NEMLDRGHGSSSVSMWGALLSA 378
           + +  + H S     W A++S 
Sbjct: 246 DGLRLKDHSS-----WVAMISG 262


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 228/443 (51%), Gaps = 17/443 (3%)

Query: 3   HAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFC 62
           H +  ++GLLL   +  ++ L+  Y+ C H   + +    L  +   +   +N ++S   
Sbjct: 151 HGYLLKSGLLLHQYV--KNALIHMYSRCFH---VDSAMQILDTVPGDDVFSYNSILSALV 205

Query: 63  RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF 122
            +G    A +    M    +  D+    S L     ++D + G Q+ A + K+G +  VF
Sbjct: 206 ESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVF 265

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           V S LID Y K   + +A   FD +  +N V   A+L+ Y +   +   L L   M    
Sbjct: 266 VSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELED 325

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
              + FT + LL ACA L A  +G  +H  ++       N + + ++LI MY K G +  
Sbjct: 326 TRPNEFTFAVLLNACASLVALAYGDLLHGRIVMS--GFKNHLIVGNALINMYSKSGNIDS 383

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           +  VF+         +N+DV+ W +M+  Y  +G  K+ + +++ M+  G  P+ V F+ 
Sbjct: 384 SYNVFS-------NMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIG 436

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           V+SAC H   V+ G  YF+ ++  + +EPG EHY+C+V LL RAG LD+A    N M   
Sbjct: 437 VLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAE---NFMKTT 493

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422
                 V  W  LL+ACH    + LGK   +  +++DPH+VG Y +LSN++AK   WD +
Sbjct: 494 TQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGV 553

Query: 423 GQLRELMKEKGLKKDVGCSWIEV 445
            ++R+LMKE+ +KK+ G SW+++
Sbjct: 554 VKIRKLMKERNIKKEPGASWLDI 576



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 167/333 (50%), Gaps = 24/333 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           RN + ++ ++  +   G  L  L  F + + +   + + Y     L+        + GKQ
Sbjct: 90  RNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQ 149

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
              ++ KSG L   +V +ALI +Y++   +  A  + D +P  +    N++LS   E+  
Sbjct: 150 CHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGC 209

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                ++++ M    + +D  T  ++L  CA +   + G Q+HA +++    L  DVF+ 
Sbjct: 210 RGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLK--TGLVFDVFVS 267

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+LI+ YGKCG V  A + F       +G  +++VV WT++L  Y +NG+F+E + L+  
Sbjct: 268 STLIDTYGKCGEVLNARKQF-------DGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTK 320

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLL 343
           M +  T+P+E  F  +++AC+    +  G      ++H   +  G +++    + L+++ 
Sbjct: 321 MELEDTRPNEFTFAVLLNACASLVALAYGD-----LLHGRIVMSGFKNHLIVGNALINMY 375

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            ++G +D ++ + + M++R      V  W A++
Sbjct: 376 SKSGNIDSSYNVFSNMMNR-----DVITWNAMI 403



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 139/302 (46%), Gaps = 27/302 (8%)

Query: 93  LTASTSVKDARFGKQVQAHV---TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           L  S + K  RFGK + A +    ++   S +   ++LI+LY+K      A  +FD +  
Sbjct: 30  LKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQ 89

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY-DHFTLSALLRACAGLSAAEFGRQ 208
           +N V  +AL+ GY         L L R + +L   Y + +  + +L  CA     + G+Q
Sbjct: 90  RNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQ 149

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
            H Y+++    L    +++++LI MY +C  V  A+Q+       L+     DV  + S+
Sbjct: 150 CHGYLLKSGLLLHQ--YVKNALIHMYSRCFHVDSAMQI-------LDTVPGDDVFSYNSI 200

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           L     +G   E  ++ + M+      D V +V+V+  C+    ++LG++     +H   
Sbjct: 201 LSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQ-----IHAQL 255

Query: 329 LEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           L+ G        S L+D   + GE+  A K  + + DR     +V  W A+L+A    G 
Sbjct: 256 LKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDR-----NVVAWTAVLTAYLQNGH 310

Query: 385 FE 386
           FE
Sbjct: 311 FE 312



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 27/222 (12%)

Query: 172 LELVRLMPALGLDYDH----FTLSALLRACAGLSAAEFGRQVHAYM-IRKCCNLGNDVFM 226
           L+L R+ PA  +   H      +  LL+  A   +  FG+ +HA + +R   +  +D+  
Sbjct: 4   LKLPRVTPAFSMYLPHPCSLKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQ 63

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +SLI +Y KCG    A ++F+    R+   + ++VV W++++  Y   G   EV+ L+ 
Sbjct: 64  INSLINLYSKCGQSKCARKLFD----RM---LQRNVVSWSALMMGYLHKGEVLEVLGLFR 116

Query: 287 AML-MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY--SCLVD 341
            ++ ++   P+E  F  V+S C+ +G+VK G +      H Y L+ G     Y  + L+ 
Sbjct: 117 NLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQ-----CHGYLLKSGLLLHQYVKNALIH 171

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           +  R   +D A     ++LD   G    S + ++LSA  + G
Sbjct: 172 MYSRCFHVDSAM----QILDTVPGDDVFS-YNSILSALVESG 208


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/411 (33%), Positives = 213/411 (51%), Gaps = 25/411 (6%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           P + + +  VI+ + + G    AL  F  M   G   +   + S L+A  S+     G +
Sbjct: 218 PLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGME 277

Query: 108 VQAHVTKSGWLS----------SVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCA 155
           + A+  K+  L+           + V +ALID+Y+K      A  +FD+IP+  +N V  
Sbjct: 278 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 337

Query: 156 NALLSGYCEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             ++ G+ +       L+L   M     G+  + +T+S +L ACA L+A   G+Q+HAY+
Sbjct: 338 TVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYV 397

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           +R      +  F+ + LI MY KCG V  A  VF+           K  + WTSM+  YG
Sbjct: 398 LRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQ-------KSAISWTSMMTGYG 450

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +G   E + +++ M   G  PD++ F+ V+ ACSH G V  G+ YF+ M  DY L P  
Sbjct: 451 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 510

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHY+  +DLL R G LDKAWK + +M        +  +W ALLSAC      EL + A  
Sbjct: 511 EHYAYAIDLLARFGRLDKAWKTVKDM----PMEPTAVVWVALLSACRVHSNVELAEHALN 566

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           K +E++  N G Y ++SN+YA    W ++ ++R LMK+ G+KK  GCSW++
Sbjct: 567 KLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 617



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 185/419 (44%), Gaps = 63/419 (15%)

Query: 13  LICLIIFQSR------LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS 66
           LIC   F+S       L+  Y+ C   +    + + +      + + +N ++S   ++ +
Sbjct: 35  LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 94

Query: 67  PLYALKTFSFMH--VH----GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
              AL  FS M   VH        D  ++ + L A  S+K     K+V  +  ++G    
Sbjct: 95  AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 154

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           VFVG+ALID YAK  L+ +A  +F+ +  K+ V  NA+++GY ++  +    EL + M  
Sbjct: 155 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 214

Query: 181 LGLDYDHFTLSA-----------------------------------LLRACAGLSAAEF 205
             +  D  T +A                                   +L ACA L A   
Sbjct: 215 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 274

Query: 206 GRQVHAYMIRKC-CNLGN-------DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           G ++HAY ++ C   L N       D+ + ++LI+MY KC     A  +F+     LE  
Sbjct: 275 GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFD--DIPLE-- 330

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN--GTKPDEVAFVTVISACSHTGQVKL 315
             ++VV WT M+G + + G   + +KL+  M+    G  P+      ++ AC+H   +++
Sbjct: 331 -ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 389

Query: 316 GIEYFEWMVHDYKLEPGPEHYS-CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           G +   +++  ++ +      + CL+++  + G++D A  + + M  +   S +  M G
Sbjct: 390 GKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTG 448



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 148/318 (46%), Gaps = 50/318 (15%)

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G  LD + L   L A   +   R G      +  +G+ S+VF+ +AL+ +Y++   + +A
Sbjct: 5   GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 64

Query: 141 ELMFDEIP---VKNSVCANALLSGYCEAKLWAGGLELVRLMPAL------GLDYDHFTLS 191
            ++FDEI    + + +  N+++S + ++      L+L   M  +          D  ++ 
Sbjct: 65  SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 124

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL-- 249
            +L AC  L A    ++VH   IR    L  DVF+ ++LI+ Y KCGL+  A++VFN+  
Sbjct: 125 NILPACGSLKAVPQTKEVHGNAIRNGTFL--DVFVGNALIDAYAKCGLMENAVKVFNMME 182

Query: 250 -----------AGHRLEG---------------EINKDVVLWTSMLGVYGRNGYFKEVIK 283
                      AG+   G                I  D+V WT+++  Y + G   E + 
Sbjct: 183 FKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALN 242

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           ++  M+ +G+ P+ V  ++V+SAC+  G    G+E     +H Y L+      +CL+ L 
Sbjct: 243 VFRQMIFSGSLPNCVTIISVLSACASLGAFSQGME-----IHAYSLK------NCLLTLD 291

Query: 344 CRAGELDKAWKLINEMLD 361
              G  D+   + N ++D
Sbjct: 292 NDFGGEDEDLMVYNALID 309


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 232/434 (53%), Gaps = 43/434 (9%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCSSLTASTSVKDARF 104
           +  R+ + +NV+IS + R      A+ TF  M   G    D   + S+L+A T++K+   
Sbjct: 304 MTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLEL 363

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC- 163
           G ++  +V K    ++  + +AL+D+YAK   ++ A  +FDE+ +KN +C  +++SGY  
Sbjct: 364 GDEIHNYVRKELGFTTR-IDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYIN 422

Query: 164 -----EAK------------LWAG-------------GLELVRLMPALGLDYDHFTLSAL 193
                EA+            LW                + L R M    +  D FT+  L
Sbjct: 423 CGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTL 482

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L  CA L A E G+ +H Y+      +  DV + ++LIEMY KCG V K+L++F    + 
Sbjct: 483 LTGCAQLGALEQGKWIHGYLDEN--RITMDVVVGTALIEMYSKCGCVDKSLEIF----YE 536

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
           LE   +KD   WTS++     NG   E ++L+  M   G KPD++ F+ V+SACSH G V
Sbjct: 537 LE---DKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLV 593

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  +F  M   +++EP  EHY C++DLL RAG LD+A +LI E +   +    V ++G
Sbjct: 594 EEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQE-IPIENCEIVVPLYG 652

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALLSAC      ++G+  A+K   ++  +  I+ +L+N+YA    W++  ++R  MKE G
Sbjct: 653 ALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELG 712

Query: 434 LKKDVGCSWIEVTG 447
           +KK  GCS IEV G
Sbjct: 713 VKKMPGCSLIEVDG 726



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 176/360 (48%), Gaps = 32/360 (8%)

Query: 35  NLGTLTNCLKFLN-PRNP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           +LG L    K  N  ++P    +NV++  + + G     L  F  +   G++ D +    
Sbjct: 189 SLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPF 248

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L A   ++D R G++V+  + K+G     +V ++LID+Y +L  + +A+ +FDE+  ++
Sbjct: 249 VLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRD 308

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDY-DHFTLSALLRACAGLSAAEFGRQVH 210
           SV  N ++SGY   + +   +   R M   G +  D  T+ + L AC  L   E G ++H
Sbjct: 309 SVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIH 368

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR--------LEGEIN--- 259
            Y +RK   LG    + ++L++MY KCG +  A  +F+    +        + G IN   
Sbjct: 369 NY-VRK--ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGD 425

Query: 260 -------------KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
                        +DVVLWT+M+  Y +  +F + + L+  M +   KPD+   VT+++ 
Sbjct: 426 LREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTG 485

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
           C+  G ++ G ++    + + ++       + L+++  + G +DK+ ++  E+ D+   S
Sbjct: 486 CAQLGALEQG-KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTAS 544



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 155/358 (43%), Gaps = 63/358 (17%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           DT     +  A +S+ + R+ +++  +V       S+FV + ++ +YAK  ++    L+F
Sbjct: 176 DTINKLMAFCADSSLGNLRYAEKIFNYVQDP----SLFVYNVMVKMYAKRGILRKVLLLF 231

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
            ++                E  LW  G                FT   +L+A   L    
Sbjct: 232 QQLR---------------EDGLWPDG----------------FTYPFVLKAIGCLRDVR 260

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G +V  ++++   +L N V+  +SLI+MY +   V  A ++F+    R       D V 
Sbjct: 261 QGEKVRGFIVKTGMDLDNYVY--NSLIDMYYELSNVENAKKLFDEMTTR-------DSVS 311

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
           W  M+  Y R   F++ I  +  M   G  KPDE   V+ +SAC+    ++LG E     
Sbjct: 312 WNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDE----- 366

Query: 324 VHDY-KLEPG--PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           +H+Y + E G      + L+D+  + G L+ A  + +EM        +V  W +++S   
Sbjct: 367 IHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEM-----SMKNVICWTSMISGYI 421

Query: 381 DCGKFELGKLAAQKALELDP-HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           +CG        A+   +  P  +V ++  + N Y +F  +D+   L   M+ + +K D
Sbjct: 422 NCGDLR----EARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPD 475


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 221/399 (55%), Gaps = 15/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS--SLTASTSVKDARFGK 106
           R+ + +NV++S +  N  P  A + F+ M +  +  D +   S  S+ +  +++   FGK
Sbjct: 231 RDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGK 290

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           QV + V +  + S V V SALI++YAK   I DA  +FDE+ ++N V  N ++ G+    
Sbjct: 291 QVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVGFGNHG 350

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                ++LV+ M   G   D  T+S+++ +C   SA     QVHA+ ++  C   + + +
Sbjct: 351 DGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQ--DFLSV 408

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +SLI  Y KCG +T A + F L           D+V WTS++  Y  +G  ++  +++E
Sbjct: 409 ANSLISAYSKCGSITSAFKCFELTSQ-------PDLVTWTSLIYAYAFHGLAEKSTEMFE 461

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML  G KPD +AF+ V+SAC+H G V  G+ YF+ M + Y++ P  EHY+CLVDLL R 
Sbjct: 462 KMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCLVDLLGRY 521

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G +++A++++  M       +     GA + +C      EL KLAA+K   ++P     Y
Sbjct: 522 GLINEAFEILRSMPIEVDSDT----LGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSVNY 577

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            ++SN++A    W ++ ++R+ M++K   K  GCSWIE+
Sbjct: 578 AVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSWIEI 616



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 183/421 (43%), Gaps = 53/421 (12%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVI-- 58
            +HAH  + G   +  +  Q++++  Y  C+  ++   L    + L  RN + +N++I  
Sbjct: 81  QLHAHLIKFGFCQV--LSLQNQILSVYLKCQEAEDAKKL---FEELPVRNVVSWNIMIRA 135

Query: 59  ----SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
               +D   +         F  M +  +  D       +   T   D   G Q+     K
Sbjct: 136 SVGRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVK 195

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            G+    FVG AL+ LYAK   + +A  +F ++  ++ V  N ++S Y    L      +
Sbjct: 196 VGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRV 255

Query: 175 VRLMPALGLDYDHFTLSALLRACA--GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
              M    ++ D FT S+LL   +   L   +FG+QVH+ ++R+  +  +DV + S+LI 
Sbjct: 256 FNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQ--SFDSDVLVASALIN 313

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY K   +  A +VF+    R       +VV W +M+  +G +G   EV+KL + ML  G
Sbjct: 314 MYAKSENIIDARRVFDEMSIR-------NVVAWNTMIVGFGNHGDGNEVMKLVKEMLREG 366

Query: 293 TKPDEVAFVTVISACS-----------HTGQVKLGIEYFEWMVHD--------------- 326
             PDE+   ++IS+C            H   VKL  + F  + +                
Sbjct: 367 FLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITSAF 426

Query: 327 --YKLEPGPE--HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
             ++L   P+   ++ L+      G  +K+ ++  +ML  G     ++  G +LSAC  C
Sbjct: 427 KCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLG-VLSACAHC 485

Query: 383 G 383
           G
Sbjct: 486 G 486



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 133/284 (46%), Gaps = 31/284 (10%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC- 163
           GKQ+ AH+ K G+   + + + ++ +Y K     DA+ +F+E+PV+N V  N ++     
Sbjct: 79  GKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVG 138

Query: 164 -EAKLWAGGLEL----VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
              +  + G+ L     R M    +  DH T + L+  C   +  E G Q+H + ++   
Sbjct: 139 RNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGF 198

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           +L  D F+  +L+ +Y KCG V  A +VF     R       D+V+W  M+  Y  N   
Sbjct: 199 DL--DCFVGCALVGLYAKCGFVENARRVFCDVSCR-------DLVMWNVMVSCYVFNSLP 249

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW--MVHDYKLEPGPEH- 335
           +E  +++ +M ++    DE  F +++S  S        +EY+++   VH   L    +  
Sbjct: 250 EEAFRVFNSMRLDVVNGDEFTFSSLLSVISDD-----ALEYYDFGKQVHSLVLRQSFDSD 304

Query: 336 ---YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
               S L+++  ++  +  A ++ +EM  R     +V  W  ++
Sbjct: 305 VLVASALINMYAKSENIIDARRVFDEMSIR-----NVVAWNTMI 343


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/431 (31%), Positives = 224/431 (51%), Gaps = 43/431 (9%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+  NP  +  +I  +   G    AL  +S M    +   ++   +  +A  +V+ +  G
Sbjct: 69  LHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALG 128

Query: 106 KQVQAHVTKSGWLSS-VFVGSALIDLYAKLLLIHDAELMFDE------------------ 146
            Q+ A     G  SS ++V +A+ID+Y K   +  A ++FDE                  
Sbjct: 129 AQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTR 188

Query: 147 -------------IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
                        +PVK+ V   A+++GY +  +    LE+ R +   G++ D  TL  +
Sbjct: 189 IGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGV 248

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           + ACA L A+++   +          +G++V + S+LI+MY KCG V +A  VF      
Sbjct: 249 ISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVF------ 302

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
            +G   ++V  ++SM+  +  +G  +  IKL+  ML  G KP+ V FV V++ACSH G V
Sbjct: 303 -KGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLV 361

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G + F  M   Y + P  E Y+C+ DLL RAG L+KA +L+  M     G+    +WG
Sbjct: 362 DQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGA----VWG 417

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL A H  G  ++ ++A+++  EL+P N+G Y++LSN YA    WD++ ++R+L++EK 
Sbjct: 418 ALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKN 477

Query: 434 LKKDVGCSWIE 444
           LKK+ G SW+E
Sbjct: 478 LKKNPGWSWVE 488



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 129/306 (42%), Gaps = 48/306 (15%)

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL--LLIHD-AELMFDE 146
           CSSL  +         K+V A +       S +V + L+ L   L  + +H    L+F +
Sbjct: 18  CSSLNQA---------KEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQ 68

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +   N     AL+  Y      +  L     M    +    FT SAL  ACA +  +  G
Sbjct: 69  LHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALG 128

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR------------- 253
            Q+HA  +       +D+++ +++I+MY KCG +  A  VF+    R             
Sbjct: 129 AQLHAQTLL-LGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYT 187

Query: 254 -----------LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
                       +G   KD+V WT+M+  Y +N    + ++++  +   G + DEV  V 
Sbjct: 188 RIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVG 247

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPG---PEHY---SCLVDLLCRAGELDKAWKLI 356
           VISAC+  G  K    Y  W + D     G    ++    S L+D+  + G +++A+ + 
Sbjct: 248 VISACAQLGASK----YANW-IRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVF 302

Query: 357 NEMLDR 362
             M +R
Sbjct: 303 KGMRER 308


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 151/454 (33%), Positives = 236/454 (51%), Gaps = 36/454 (7%)

Query: 1   NVHAHQFETGLLLICL-----IIFQSRLMLPYTTCR--HKKNLGTLTNCLKFLNPRNPLP 53
            +HAH  + GL  I L     I F S+  LPY++ +  H     + T             
Sbjct: 41  QLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATT------------ 88

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           ++ VIS F +N  PL +L  F  M   G+  D +   S+  +   +      K +     
Sbjct: 89  WSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCFAL 148

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K+ +   +FVGS++ID+YAK   I  A  +FDE+P +N V  + L+ GY +       L 
Sbjct: 149 KTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLR 208

Query: 174 LVR--LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L +  L+       + FTLS++LR C G +  + GR +H    +   +  +  F+ SSLI
Sbjct: 209 LFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFK--TSFDSSCFVASSLI 266

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-M 290
            +Y KCG+V +A  VF       E    +++ +W +ML    ++ +  +  +L++ M  +
Sbjct: 267 SLYSKCGVVEEAYDVF-------EEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSV 319

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G K + + F+ V+ ACSH G V+ G  YFE M  DY +EPG +HYS +VDLL RAG+L+
Sbjct: 320 GGMKANFITFLCVLYACSHAGLVEKGKYYFELM-KDYGIEPGTQHYSTMVDLLGRAGKLN 378

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            A KLI EM        + S+WGALL+ C   G  +L    A +  EL   + G++VMLS
Sbjct: 379 DAVKLIEEM----PMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLS 434

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           N YA    W+E  + R++M+++G+KK+ G SW+E
Sbjct: 435 NAYAAAGRWEEAAKARKMMRDRGIKKETGLSWVE 468



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 146/309 (47%), Gaps = 29/309 (9%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           LC++L + T  +    G Q+ AH+ K G  +   +   LI+ Y+K  L + +  +F + P
Sbjct: 23  LCNTLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSP 82

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
            K++   ++++S + +  L    L   RLM   G+  D     +  ++C  LS+    + 
Sbjct: 83  HKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKM 142

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +H + ++   +L  D+F+ SS+I+MY KCG +  A  VF+   +R       +VV W+ +
Sbjct: 143 LHCFALKTAYHL--DIFVGSSVIDMYAKCGDICYAHNVFDEMPYR-------NVVSWSGL 193

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKP--DEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +  Y + G   E ++L++  L+       ++    +V+  C  +  +++G      ++H 
Sbjct: 194 IYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMG-----RLIHG 248

Query: 327 YKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--- 379
              +   +      S L+ L  + G +++A+ +  E+  R  G     MW A+L AC   
Sbjct: 249 LSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLG-----MWNAMLIACAQH 303

Query: 380 -HDCGKFEL 387
            H    FEL
Sbjct: 304 AHTDKTFEL 312


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 140/425 (32%), Positives = 221/425 (52%), Gaps = 44/425 (10%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +NV+IS + R+     ++K F  M    +   +  L S L+A + +KD   GK+V  +V 
Sbjct: 188 WNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVK 247

Query: 114 KSGWLSSVFVGSALIDLYA------KLLLIHD-------------------------AEL 142
                    + +ALID+YA        L I D                         A  
Sbjct: 248 DLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARN 307

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
            FD++P ++ V   A++ GY +   +   L L R M A  +  D FT+ ++L ACA L A
Sbjct: 308 YFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGA 367

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            E G  + AY+ +    +  D F+ ++LI+MY  CG V KA+++FN   HR       D 
Sbjct: 368 LELGEWIKAYIDKN--EIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR-------DK 418

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           + WT+++     NGY +E + ++  ML     PDEV  + V+ AC+H+G V  G ++F  
Sbjct: 419 ISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFAR 478

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M   + +EP   HY C+VDLL RAG L +A ++I  M  + +      +WG+LL AC   
Sbjct: 479 MTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNS----IVWGSLLGACRVH 534

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
              E+ ++AAQ+ LEL+P N  +YV+L N+YA    W+++ ++R+LM ++G+KK  GCS 
Sbjct: 535 RDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSL 594

Query: 443 IEVTG 447
           IE+ G
Sbjct: 595 IEMNG 599



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 173/371 (46%), Gaps = 48/371 (12%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYA---LCSSLTASTSVKDARFGK 106
           N   +N +I  + R G P  A+  +  M   G+  D Y    L    T  T+VK    G+
Sbjct: 83  NHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVK---CGR 139

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++  H+ K G+ S+VFV +ALI LY+    +  A  +FD     + V  N ++SGY  +K
Sbjct: 140 ELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSK 199

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
            +   ++L   M  + +     TL ++L AC+ L     G++VH Y+  K   +     +
Sbjct: 200 QFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV--KDLKIEPVRVL 257

Query: 227 QSSLIEMYGKCGLVTKALQVFN------------------------LAGHRLEGEINKDV 262
           +++LI+MY  CG +  AL +F+                        LA +  +    +D 
Sbjct: 258 ENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDF 317

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V WT+M+  Y +   FKEV+ L+  M     KPDE   V++++AC+H G ++LG E+ + 
Sbjct: 318 VSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG-EWIKA 376

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR---------------GHGSS 367
            +   +++      + L+D+    G ++KA ++ N M  R               G+G  
Sbjct: 377 YIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEE 436

Query: 368 SVSMWGALLSA 378
           ++ M+  +L A
Sbjct: 437 ALDMFSQMLKA 447



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 151/334 (45%), Gaps = 20/334 (5%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLL--IHDAELMFDEIPVKNSVCANALLSGYC 163
           KQ+ +    +G +S+  V + +I    K  L  +  A ++FD +P  N    N ++ GY 
Sbjct: 36  KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYS 95

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
                   + +   M   G+  D +T   LL+     +A + GR++H ++++      ++
Sbjct: 96  RVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVK--LGFSSN 153

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           VF+Q++LI +Y   G V+ A  VF+ +          DVV W  M+  Y R+  F E +K
Sbjct: 154 VFVQNALIHLYSLSGEVSVARGVFDRSS-------KGDVVTWNVMISGYNRSKQFDESMK 206

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           L++ M      P  +  V+V+SACS    + +G     + V D K+EP     + L+D+ 
Sbjct: 207 LFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRY-VKDLKIEPVRVLENALIDMY 265

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
              G++D A  + + M  R      V  W A+++   + G+  L +    K  E D    
Sbjct: 266 AACGDMDTALGIFDNMKSR-----DVISWTAIVTGFTNLGQVGLARNYFDKMPERD---F 317

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
             +  + + Y +   + E+  L   M+   +K D
Sbjct: 318 VSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPD 351



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 136/349 (38%), Gaps = 56/349 (16%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
            +G   N    +  R+ + +  +I  + +       L  F  M    I  D + + S LT
Sbjct: 301 QVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILT 360

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A   +     G+ ++A++ K+      FVG+ALID+Y     +  A  +F+ +P ++ + 
Sbjct: 361 ACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKIS 420

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
             A++ G          L++   M    +  D  T   +L AC      + G++  A M 
Sbjct: 421 WTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMT 480

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
            +                 +G                      I  +V  +  M+ + GR
Sbjct: 481 TQ-----------------HG----------------------IEPNVAHYGCMVDLLGR 501

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
            G+ KE  ++ + M     KP+ + + +++ AC    +V    E  E M     LE  PE
Sbjct: 502 AGHLKEAHEVIKNM---PVKPNSIVWGSLLGAC----RVHRDEEMAE-MAAQQILELEPE 553

Query: 335 HYSCLVDLLCRAGELDKAWKLINE----MLDRG----HGSSSVSMWGAL 375
           + +  V LLC        W+ ++E    M+DRG     G S + M G++
Sbjct: 554 NGAVYV-LLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSV 601


>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
 gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
          Length = 545

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/390 (35%), Positives = 204/390 (52%), Gaps = 55/390 (14%)

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY------------------ 131
           C +L AS      R G+QV AHV +SG  S   V ++LI++Y                  
Sbjct: 126 CGALAAS------RLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMRE 179

Query: 132 -------------AKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
                        A++  +  A  +F  +P K  V   AL+SGY     + G +E+ RLM
Sbjct: 180 KDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLM 239

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGK 236
              G + D  ++ A+L ACA L A E GR ++AY    C   G    V++ ++L+EMY K
Sbjct: 240 QMEGFEPDDVSIVAVLPACAQLGALELGRWIYAY----CSKHGMLGKVYICNALMEMYAK 295

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKP 295
           CG + +ALQ+F+       G   KDV+ W++ +G    +G  +E ++L+E M   G   P
Sbjct: 296 CGCIEEALQLFH-------GMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMP 348

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           + + FV ++SACSH G V  G+ Y + M  DY +EPG EHY C+VDLL R+G + +A   
Sbjct: 349 NGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDT 408

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
           I  M     G     +WG+LLSAC   G  E   +AA++ +EL+P +VG  VML+N+Y  
Sbjct: 409 IRGMPVPPDG----KIWGSLLSACRSHGDVETAVVAAERLVELEPGDVGNLVMLANVYGA 464

Query: 416 FCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              W E+   R+ ++ +  +K  GCS IEV
Sbjct: 465 AGRWGEVASTRKEIRSRSTRKTPGCSMIEV 494



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 143/290 (49%), Gaps = 43/290 (14%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLM 178
           S +V + ++ +         A  +F +IP  N    NA++  Y +  L    +E+ VR++
Sbjct: 41  SSYVATQIVHICNAHGRAAHAARVFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRML 100

Query: 179 PAL------GLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
             L      G    D FT   LL+AC  L+A+  GRQVHA++ R  C   +   +Q+SLI
Sbjct: 101 RCLPHPSTAGFSVGDRFTYPFLLKACGALAASRLGRQVHAHVARSGCE--SHAVVQNSLI 158

Query: 232 EMYGKCGLVTKALQVFN-------------LAGHRLEGEI-----------NKDVVLWTS 267
           EMY +CG ++ A + F+             ++ H   G++           +K VV WT+
Sbjct: 159 EMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTA 218

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           ++  Y   G F   ++++  M M G +PD+V+ V V+ AC+  G ++LG     W ++ Y
Sbjct: 219 LVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLGALELG----RW-IYAY 273

Query: 328 KLEPG--PEHYSC--LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             + G   + Y C  L+++  + G +++A +L + M ++   S S ++ G
Sbjct: 274 CSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGG 323


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 212/397 (53%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +NV+I+ +  N      L+ F  M             S L+ + SV     GKQ+
Sbjct: 304 RDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQI 363

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A +   G  S   VG+ALID+Y+K  ++  A+  F     K  V   A+++G  +    
Sbjct: 364 HAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQ 423

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   M   GL  D  T S+ ++A + L+    GRQ+H+Y+IR      + VF  S
Sbjct: 424 EEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRS--GHMSSVFSGS 481

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG + +ALQ F+    R       + + W +++  Y   G  K  IK++E M
Sbjct: 482 ALLDMYTKCGCLDEALQTFDEMPER-------NSISWNAVISAYAHYGQAKNAIKMFEGM 534

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  G KPD V F++V+SACSH G  +  ++YFE M ++Y + P  EHYSC++D L R G 
Sbjct: 535 LCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGR 594

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            DK  +++ EM           +W ++L +C   G  +L ++AA+K   +   +   YV+
Sbjct: 595 FDKVQEMLGEM----PFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVI 650

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN++AK   W++   ++++M+++GL+K+ G SW+EV
Sbjct: 651 LSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEV 687



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 158/399 (39%), Gaps = 67/399 (16%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           N +  + +  +I+   +NG    AL+ F  M   G+  D     S++ AS+++     G+
Sbjct: 403 NDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGR 462

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+ +++ +SG +SSVF GSAL+D+Y K   + +A   FDE+P +NS+  NA++S Y    
Sbjct: 463 QLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYG 522

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                +++   M   G   D  T  ++L AC+                            
Sbjct: 523 QAKNAIKMFEGMLCYGFKPDSVTFLSVLSACS---------------------------- 554

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
                      GL  + ++ F L  +  E  I+     ++ ++   GR G F +V ++  
Sbjct: 555 ---------HNGLAEECMKYFELMEY--EYGISPWKEHYSCVIDTLGRVGRFDKVQEMLG 603

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M     + D + + +++ +C   G   L     E +      +  P  Y  L ++  +A
Sbjct: 604 EMPF---EDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATP--YVILSNIFAKA 658

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G+ + A  +   M DRG    +   W   +   H    F           E+        
Sbjct: 659 GKWEDAAGVKKIMRDRGLRKETGYSW---VEVKHKVYSFSSNDQTNPMITEIK------- 708

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
                        DE+ +L + M ++G K D  C+  +V
Sbjct: 709 -------------DELERLYKEMDKQGYKPDTSCTLQQV 734



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 123/269 (45%), Gaps = 18/269 (6%)

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S+V V + L+D Y K  L+  A  +F E+P ++SV  NA++ G  +    A  L+L   M
Sbjct: 173 SNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAM 232

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              GL    FT S +L    G+     GRQVH  + R      ++VF+ +SL++ Y KC 
Sbjct: 233 RRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARAT---SSNVFVNNSLLDFYSKCD 289

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            + +  ++F    H +   I +D V +  M+  Y  N     V++L+  M         +
Sbjct: 290 CLDEMKKLF----HEM---IERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQAL 342

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA-WKLIN 357
            + +++S       + +G +    +V    L       + L+D+  + G LD A    IN
Sbjct: 343 PYASLLSVAGSVPHIGIGKQIHAQLVL-LGLSSEDLVGNALIDMYSKCGMLDAAKTNFIN 401

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           +     +  + VS W A+++ C   G+ E
Sbjct: 402 K-----NDKTGVS-WTAMITGCVQNGQQE 424



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 14/166 (8%)

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR--NGYFK 279
           N+ F  + ++  Y + G ++ A  +F  +   L     +D V WT M+G +         
Sbjct: 64  NNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHL-----RDAVTWTVMIGAFASAPGARAS 118

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           + + L+  ML  G  PD V   TV++    +G     I      +H + L+ G  H + +
Sbjct: 119 DAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIAS--LHPFALKLGLLHSNVV 176

Query: 340 V-----DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           V     D  C+ G L  A ++  EM  R   + +  M G      H
Sbjct: 177 VCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSH 222


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 154/509 (30%), Positives = 243/509 (47%), Gaps = 77/509 (15%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
             HAH  ++GL  I      SRL+   +T  H + +    +    +   N   +N +I  
Sbjct: 25  QAHAHILKSGL--IHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRA 82

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTS---------------------- 98
           +  + +P  AL  F  M    +  D Y    +L +  S                      
Sbjct: 83  YANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDD 142

Query: 99  ----------------VKDAR--FGKQVQAHVTKSGWLSSVFVGSALIDL---------- 130
                           ++DAR    + ++  V     L S +    L++L          
Sbjct: 143 LFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTE 202

Query: 131 ------------YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
                       Y  + L+ +A  +F E PVKN V  NA+++GY  A  ++  L L   M
Sbjct: 203 RNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDM 262

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              G+  D+ TL ++L ACA + A   G  VHAY+ +   ++  D F+ ++L++MY KCG
Sbjct: 263 QHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISI--DGFVATALVDMYSKCG 320

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            + KAL+VFN         + KD+  W S++     +G  +  ++++  ML+ G KP+EV
Sbjct: 321 SIEKALEVFNSC-------LRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEV 373

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            FV V+SACS  G +  G E F  MVH + ++P  EHY C+VDLL R G L++A +L+ +
Sbjct: 374 TFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQK 433

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
           M  +    +SV +W +LL AC + G  EL +  AQK LEL P     +V LSN+YA    
Sbjct: 434 MPQK---EASV-VWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGR 489

Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           W ++ ++R+ M+ +G++KD GCS IEV G
Sbjct: 490 WKDVMEVRQKMRAQGVRKDPGCSMIEVDG 518


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 240/429 (55%), Gaps = 26/429 (6%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKF--LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           +M  Y TC    ++     CL F  +  +N + +  +I+ F   G  +  LK +  M + 
Sbjct: 152 MMNMYATC----SVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLE 207

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
              +  Y +  ++ AS S+     GKQ+ A V K G+ S++ V ++++DLY +   + +A
Sbjct: 208 NAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEA 267

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
           +  F E+  K+ +  N L+S   E    +  L + +   + G   + +T ++L+ ACA +
Sbjct: 268 KHYFHEMEDKDLITWNTLISE-LERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANI 326

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-- 258
           +A   G+Q+H  + R+  N   +V + ++LI+MY KCG +  + +VF        GEI  
Sbjct: 327 AALNCGQQLHGRIFRRGFN--KNVELANALIDMYAKCGNIPDSQRVF--------GEIVD 376

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            +++V WTSM+  YG +GY  E ++L++ M+ +G +PD + F+ V+SAC H G V+ G++
Sbjct: 377 RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLK 436

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           YF  M  +Y + P  + Y+C+VDLL RAG++ +A++L+  M  +   S+    WGA+L A
Sbjct: 437 YFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDEST----WGAILGA 492

Query: 379 C--HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           C  H      + +LAA+K +EL P  VG YVMLS +YA    W +  ++R++M+  G KK
Sbjct: 493 CKAHKHNGL-ISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKK 551

Query: 437 DVGCSWIEV 445
           + G SWI V
Sbjct: 552 EAGMSWILV 560



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 119/261 (45%), Gaps = 24/261 (9%)

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            + + LI  Y +  L+ +A  +FDE+P ++ V   A+++GY  +   A   E    M   
Sbjct: 46  ILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G   + FTLS++L++C  +    +G  VH  +++    +   +++ ++++ MY  C +  
Sbjct: 106 GTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVK--LGMEGSLYVDNAMMNMYATCSVTM 163

Query: 242 KAL-QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
           +A   +F       + ++  DV  WT+++  +   G     +K+Y+ ML+   +      
Sbjct: 164 EAACLIFR------DIKVKNDVT-WTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCI 216

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLI 356
              + A +    V  G +     +H   ++ G +      + ++DL CR G L +A    
Sbjct: 217 TIAVRASASIDSVTTGKQ-----IHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYF 271

Query: 357 NEMLDRGHGSSSVSMWGALLS 377
           +EM D+      +  W  L+S
Sbjct: 272 HEMEDK-----DLITWNTLIS 287


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 141/432 (32%), Positives = 230/432 (53%), Gaps = 23/432 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKT 73
           ++ Q+ L+  Y  C      G+L    +  +    R+ + +  +I+ + +N     AL  
Sbjct: 109 LVIQNSLLFMYARC------GSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLL 162

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M   G   + + L S +     +     G+Q+ A   K G  S+VFVGS+L+D+YA+
Sbjct: 163 FPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYAR 222

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              + +A L+FD++  KN V  NAL++GY         L L   M   G     FT SAL
Sbjct: 223 CGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSAL 282

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L +C+ +   E G+ +HA++++    L    ++ ++L+ MY K G +  A +VF+     
Sbjct: 283 LSSCSSMGCLEQGKWLHAHLMKSSQKLVG--YVGNTLLHMYAKSGSIRDAEKVFDKL--- 337

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
               +  DVV   SML  Y ++G  KE  + ++ M+  G +P+++ F++V++ACSH   +
Sbjct: 338 ----VKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLL 393

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G  YF  M   Y +EP   HY+ +VDLL RAG LD+A   I EM        +V++WG
Sbjct: 394 DEGKHYFGLM-RKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIE----PTVAIWG 448

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL A       E+G  AAQ+  ELDP   G + +L+N+YA    W+++ ++R++MK+ G
Sbjct: 449 ALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSG 508

Query: 434 LKKDVGCSWIEV 445
           +KK+  CSW+EV
Sbjct: 509 VKKEPACSWVEV 520



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 122/224 (54%), Gaps = 9/224 (4%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L   T +   + GK V  HV  S +   + + ++L+ +YA+   +  A  +FDE+P ++ 
Sbjct: 81  LKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDM 140

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V   ++++GY +    +  L L   M + G + + FTLS+L++ C  +++   GRQ+HA 
Sbjct: 141 VSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHAC 200

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
             +  C+  ++VF+ SSL++MY +CG + +A+ VF+  G        K+ V W +++  Y
Sbjct: 201 CWKYGCH--SNVFVGSSLVDMYARCGYLGEAMLVFDKLG-------CKNEVSWNALIAGY 251

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            R G  +E + L+  M   G +P E  +  ++S+CS  G ++ G
Sbjct: 252 ARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQG 295


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 209/391 (53%), Gaps = 13/391 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++S + +N +   A+K F  M    +  D   L   L++   +     G+QV A   
Sbjct: 358 WNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQ 417

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K+ + + +++ S LI +Y+K   +  A+ +FD I   + VC N++++G     L      
Sbjct: 418 KAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFT 477

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
             + M   G+    F+ + +L  CA LS+   GRQVH+ + R+     ND F+ S+LI+M
Sbjct: 478 FFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIARE--GYMNDAFVGSALIDM 535

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V  A  VF++        + K+ V W  M+  Y +NG   E + LYE M+ +G 
Sbjct: 536 YSKCGDVDAARWVFDMM-------LGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGE 588

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           KPD + FV V++ACSH+G V  GI+ F  M  ++ +EP  +HY+C++D L RAG L +A 
Sbjct: 589 KPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAE 648

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
            LI++M  +        +W  LLS+C       L + AA++   LDP N   YV+L+N+Y
Sbjct: 649 VLIDKMPCK----YDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIY 704

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +    WD+   +RELM    + KD G SWIE
Sbjct: 705 SSLGRWDDAKAVRELMSYNQVVKDPGYSWIE 735



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 166/379 (43%), Gaps = 39/379 (10%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HAH   + L     +   +RL+  Y  C     +         +  R+   +N ++  +
Sbjct: 27  IHAHMLRSRLSDDTFL--SNRLIEFYAKC---NAIDASRRLFDQMPKRDIYTWNAILGAY 81

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT---ASTSVKDARFGKQVQAHVTKSGWL 118
           C+      A   F+ M    I +    L S+LT   A  ++ D   G++      K G  
Sbjct: 82  CKASELEDAHVLFAEMPERNI-VSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLD 140

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           ++++VG+AL+ +YAK   I DA   F ++P  N V   A++ G  ++        L RLM
Sbjct: 141 NNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLM 200

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEF--------------GRQVHAYMIRKCCNLGNDV 224
               +  D  +LS++L  C+     EF              G+QVH   I+      +D+
Sbjct: 201 LRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKH--GFESDL 258

Query: 225 FMQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
            + +SL++MY K G +  A  +F N+       E++  VV W  M+  YG+     + I+
Sbjct: 259 HLNNSLLDMYAKNGNMDSAEMIFVNMP------EVS--VVSWNVMIAGYGQKSQSSKAIE 310

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
             + M  +G +PDE+ +V ++ AC  +G ++ G + F+ M       P    ++ ++   
Sbjct: 311 YLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMS-----SPSLSSWNTILSGY 365

Query: 344 CRAGELDKAWKLINEMLDR 362
            +     +A KL  EM  R
Sbjct: 366 SQNENHKEAVKLFREMQFR 384



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 137/309 (44%), Gaps = 31/309 (10%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           T  L S L      K    GK + AH+ +S      F+ + LI+ YAK   I  +  +FD
Sbjct: 5   TTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFD 64

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR--ACAGLSAA 203
           ++P ++    NA+L  YC+A        L   MP   +   +  +SAL R  AC  L   
Sbjct: 65  QMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDV 124

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DV 262
           E GR+ H   I+    L N++++ ++L+ MY KC  +  A+Q F        G++ + + 
Sbjct: 125 ECGRRCHGISIK--IGLDNNIYVGNALLGMYAKCRCIGDAIQAF--------GDVPEPNE 174

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI----- 317
           V +T+M+G    +    E  +L+  ML N    D V+  +V+  CS  G  + G+     
Sbjct: 175 VSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSND 234

Query: 318 ----EYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
               +     VH   ++ G E      + L+D+  + G +D A     EM+       SV
Sbjct: 235 VLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSA-----EMIFVNMPEVSV 289

Query: 370 SMWGALLSA 378
             W  +++ 
Sbjct: 290 VSWNVMIAG 298



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 155/387 (40%), Gaps = 57/387 (14%)

Query: 1   NVHAHQFETGLLLICLII---FQSRLMLPYTTCR-HKKNLGTLTNCLKFLN-PR-NPLPF 54
           +VH  Q        CL I   F+S L L  +    + KN    +  + F+N P  + + +
Sbjct: 239 DVHGQQVH------CLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSW 292

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           NV+I+ + +      A++    M  HG   D     + L A     D   G+Q       
Sbjct: 293 NVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQ------- 345

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
                                       MFD +   +    N +LSGY + +     ++L
Sbjct: 346 ----------------------------MFDGMSSPSLSSWNTILSGYSQNENHKEAVKL 377

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M    +  D  TL+ +L + AG+   E GRQVHA  + +      D+++ S LI MY
Sbjct: 378 FREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHA--VSQKAVFRTDIYLASGLIGMY 435

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG V  A ++F+            D+V W SM+     N   KE    ++ M   G  
Sbjct: 436 SKCGKVEMAKRIFDRIAEL-------DIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMF 488

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           P + ++ TV+S C+    +  G +    +  +  +       S L+D+  + G++D A  
Sbjct: 489 PSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVG-SALIDMYSKCGDVDAARW 547

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHD 381
           + + ML +   + +  + G   + C D
Sbjct: 548 VFDMMLGKNTVTWNEMIHGYAQNGCGD 574


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 220/395 (55%), Gaps = 14/395 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +NV+I+    NG    +L+ F  +         +   + L+ + +  +   G+Q+ + 
Sbjct: 307 ISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQ 366

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
              +  +S V VG++L+D+YAK     +A  +F ++  ++SV   AL+SGY +  L   G
Sbjct: 367 AIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDG 426

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L+L   M    +  D  T +++LRACA L++   G+Q+H+ +IR  C L N VF  S+L+
Sbjct: 427 LKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGC-LSN-VFSGSALV 484

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KCG + +ALQ+F     R       + V W +++  Y +NG     ++ +E M+ +
Sbjct: 485 DMYAKCGSIKEALQMFQEMPVR-------NSVSWNALISAYAQNGDGGHALRSFEQMIHS 537

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G +P+ V+F++++ ACSH G V+ G++YF  M   YKLEP  EHY+ +VD+LCR+G  D+
Sbjct: 538 GLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDE 597

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIYVMLS 410
           A KL+  M           MW ++L++C      EL   AA +   +    +   YV +S
Sbjct: 598 AEKLMARMP----FEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMS 653

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           N+YA    WD +G++++ ++E+G++K    SW+E+
Sbjct: 654 NIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEI 688



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 180/385 (46%), Gaps = 34/385 (8%)

Query: 1   NVHAHQFETG---LLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVV 57
            VH H  + G    L++C     + L+  Y   R   +LG   +  K +  ++ + FN +
Sbjct: 160 QVHGHVVKVGYDSTLMVC-----NSLLDSYCKTR---SLGLACHLFKHMAEKDNVTFNAL 211

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           ++ + + G    A+  F  M   G     +   + LTA   + D  FG+QV + V K  +
Sbjct: 212 LTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNF 271

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG----GLE 173
           + +VFV +AL+D Y+K   I +A  +F E+P  + +  N L++  C A  W G     LE
Sbjct: 272 VWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLIT--CCA--WNGRVEESLE 327

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R +     D   F  + LL   A     E GRQ+H+  I    +  ++V + +SL++M
Sbjct: 328 LFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAI--VTDAISEVLVGNSLVDM 385

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KC    +A ++F    H       +  V WT+++  Y + G  ++ +KL+  M     
Sbjct: 386 YAKCDKFGEANRIFADLAH-------QSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKI 438

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
             D   + +++ AC++   + LG +    ++    L       S LVD+  + G + +A 
Sbjct: 439 GADSATYASILRACANLASLTLGKQLHSRIIRSGCLS-NVFSGSALVDMYAKCGSIKEAL 497

Query: 354 KLINEMLDRGHGSSSVSMWGALLSA 378
           ++  EM  R    +SVS W AL+SA
Sbjct: 498 QMFQEMPVR----NSVS-WNALISA 517



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 172/428 (40%), Gaps = 69/428 (16%)

Query: 14  ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKT 73
           I  ++  + L+  Y  C      G        L  ++ +P+  +IS + + G     LK 
Sbjct: 373 ISEVLVGNSLVDMYAKC---DKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKL 429

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  MH   I  D+    S L A  ++     GKQ+ + + +SG LS+VF GSAL+D+YAK
Sbjct: 430 FVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAK 489

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              I +A  MF E+PV+NSV  NAL+S Y +       L     M   GL  +  +  ++
Sbjct: 490 CGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSI 549

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L AC+                                      CGLV + LQ FN     
Sbjct: 550 LCACS-------------------------------------HCGLVEEGLQYFNSMTQV 572

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
            + E  ++   + SM+ +  R+G F E  KL   M     +PDE+ + +++++C      
Sbjct: 573 YKLEPRRE--HYASMVDMLCRSGRFDEAEKLMARMPF---EPDEIMWSSILNSCRIHKNQ 627

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           +L I+  + + +   L      Y  + ++   AGE D   K+   + +RG        W 
Sbjct: 628 ELAIKAADQLFNMKGLRDAAP-YVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWV 686

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
            +    H    F     +  +  E+                      ++ +L + M+E+G
Sbjct: 687 EIKQKTH---VFSANDTSHPQTKEITR--------------------KLDELEKQMEEQG 723

Query: 434 LKKDVGCS 441
            K D  C+
Sbjct: 724 YKPDSTCA 731



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 169/356 (47%), Gaps = 19/356 (5%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           NL T  +    +  R+ + + ++I  + ++   L A   F+ M  HG+  D   L + L+
Sbjct: 88  NLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLS 147

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
             T  +      QV  HV K G+ S++ V ++L+D Y K   +  A  +F  +  K++V 
Sbjct: 148 GFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVT 207

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            NALL+GY +       + L   M  LG     FT +A+L A   +   EFG+QVH++++
Sbjct: 208 FNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVV 267

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYG 273
           +  CN   +VF+ ++L++ Y K   + +A ++F         E+ + D + +  ++    
Sbjct: 268 K--CNFVWNVFVANALLDFYSKHDRIVEARKLFY--------EMPEVDGISYNVLITCCA 317

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLEPG 332
            NG  +E ++L+  +        +  F T++S  +++  +++G + + + +V D   E  
Sbjct: 318 WNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVL 377

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
               + LVD+  +  +  +A ++     D  H SS    W AL+S     G  E G
Sbjct: 378 VG--NSLVDMYAKCDKFGEANRIF---ADLAHQSSVP--WTALISGYVQKGLHEDG 426



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 115/276 (41%), Gaps = 28/276 (10%)

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS- 120
           C   + L+ L T +    H   +D   + +    +T     RF  QVQ H+ +    ++ 
Sbjct: 7   CTRKTHLHNLGTLTSPKRHFQHVDASMIKTGFDPNT----CRFNFQVQTHLQRGDLGAAR 62

Query: 121 ----------VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
                     V   + +I  Y K   +  A  +FD +  ++ V    L+ GY +   +  
Sbjct: 63  KLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLE 122

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--S 228
              L   M   G+  DH TL+ LL       +     QVH ++++    +G D  +   +
Sbjct: 123 AFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVK----VGYDSTLMVCN 178

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++ Y K    T++L    LA H  +    KD V + ++L  Y + G+  + I L+  M
Sbjct: 179 SLLDSYCK----TRSL---GLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKM 231

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
              G +P E  F  V++A      ++ G +   ++V
Sbjct: 232 QDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVV 267


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 141/421 (33%), Positives = 218/421 (51%), Gaps = 38/421 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF---- 104
           R+ + +N +IS + +NG  L A + F    V  +F  T A+ S    +  + +AR     
Sbjct: 233 RDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWT-AMVSGYVQNGMLDEARRVFDG 291

Query: 105 ---GKQVQAHVTKSGWLS-----------------SVFVGSALIDLYAKLLLIHDAELMF 144
                 V  +   +G++                  +V   + +I  YA+   I  A   F
Sbjct: 292 MPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFF 351

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +P ++S+   A+++GY ++      L L   M   G   +  T ++ L  CA ++A E
Sbjct: 352 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 411

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G+QVH  +++    L +  ++ ++L+ MY KCG +  A  VF       EG   K+VV 
Sbjct: 412 LGKQVHGRVVK--AGLESGCYVGNALLVMYCKCGNIDDAYIVF-------EGIEEKEVVS 462

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +M+  Y R+G+ KE + L+E+M   G  PD+V  V V+SACSHTG V  G EYF  M 
Sbjct: 463 WNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMT 522

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            DY +    +HY+C++DLL RAG LD A  L+  M          + WGALL A    G 
Sbjct: 523 QDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM----PFEPDAATWGALLGASRIHGN 578

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            ELG+ AA+   E++P N G+YV+LSNLYA    W ++G++R  M+++G+KK  G SW+E
Sbjct: 579 TELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVE 638

Query: 445 V 445
           V
Sbjct: 639 V 639



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 82/414 (19%), Positives = 161/414 (38%), Gaps = 64/414 (15%)

Query: 30  CRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYAL 89
           C   +NL         +  R+ + +N ++S + +NG    A + F  M      +    +
Sbjct: 121 CVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS-ISWNGM 179

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
            ++   +  ++DAR     +   +K+ W   +   + ++  Y K   + DA  +FD +P 
Sbjct: 180 LAAYVQNGRIEDAR-----RLFESKADW--ELISWNCMMGGYVKRNRLVDARGIFDRMPE 232

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
           ++ V  N ++SGY +         L    P      D FT +A++         +  R+V
Sbjct: 233 RDEVSWNTMISGYAQNGELLEAQRLFEESPV----RDVFTWTAMVSGYVQNGMLDEARRV 288

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
              M  K      +    +++I  Y +C  + +A ++F       E    ++V  W +M+
Sbjct: 289 FDGMPEK------NSVSWNAIIAGYVQCKRMDQARELF-------EAMPCQNVSSWNTMI 335

Query: 270 GVYGRN-------------------------------GYFKEVIKLYEAMLMNGTKPDEV 298
             Y +N                               GY +E + L+  M  +G + +  
Sbjct: 336 TGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRS 395

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            F + +S C+    ++LG +    +V    LE G    + L+ + C+ G +D A+ +   
Sbjct: 396 TFTSTLSTCAEIAALELGKQVHGRVVK-AGLESGCYVGNALLVMYCKCGNIDDAYIVFE- 453

Query: 359 MLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
               G     V  W  +++  A H  GK  L    + K   + P +V +  +LS
Sbjct: 454 ----GIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLS 503



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 90/197 (45%), Gaps = 21/197 (10%)

Query: 239 LVTKALQVFNLAGHRL--EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           +++  ++  NL   RL  +    +DVV W +ML  Y +NGY KE  ++++ M    +   
Sbjct: 117 MISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS--- 173

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
            +++  +++A    G+++     FE    D++L      ++C++    +   L  A  + 
Sbjct: 174 -ISWNGMLAAYVQNGRIEDARRLFESKA-DWELIS----WNCMMGGYVKRNRLVDARGIF 227

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIYVMLSNLYAK 415
           + M +R   S     W  ++S     G+     L AQ+  E  P  +V  +  + + Y +
Sbjct: 228 DRMPERDEVS-----WNTMISGYAQNGEL----LEAQRLFEESPVRDVFTWTAMVSGYVQ 278

Query: 416 FCMWDEIGQLRELMKEK 432
             M DE  ++ + M EK
Sbjct: 279 NGMLDEARRVFDGMPEK 295


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 209/391 (53%), Gaps = 13/391 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++S + +N +   A+K F  M    +  D   L   L++   +     G+QV A   
Sbjct: 387 WNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQ 446

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K+ + + +++ S LI +Y+K   +  A+ +FD I   + VC N++++G     L      
Sbjct: 447 KAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFT 506

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
             + M   G+    F+ + +L  CA LS+   GRQVH+ + R+     ND F+ S+LI+M
Sbjct: 507 FFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIARE--GYMNDAFVGSALIDM 564

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V  A  VF++        + K+ V W  M+  Y +NG   E + LYE M+ +G 
Sbjct: 565 YSKCGDVDAARWVFDMM-------LGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGE 617

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           KPD + FV V++ACSH+G V  GI+ F  M  ++ +EP  +HY+C++D L RAG L +A 
Sbjct: 618 KPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAE 677

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
            LI++M  +        +W  LLS+C       L + AA++   LDP N   YV+L+N+Y
Sbjct: 678 VLIDKMPCK----YDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIY 733

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +    WD+   +RELM    + KD G SWIE
Sbjct: 734 SSLGRWDDAKAVRELMSYNQVVKDPGYSWIE 764



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 152/329 (46%), Gaps = 30/329 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +IS   RNG    AL  +  M   G     + L S L+A  ++ D   G++ 
Sbjct: 100 RNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRC 159

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G  ++++VG+AL+ +YAK   I DA   F ++P  N V   A++ G  ++   
Sbjct: 160 HGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQV 219

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF--------------GRQVHAYMI 214
                L RLM    +  D  +LS++L  C+     EF              G+QVH   I
Sbjct: 220 NEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTI 279

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYG 273
           +      +D+ + +SL++MY K G +  A  +F N+       E++  VV W  M+  YG
Sbjct: 280 KH--GFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP------EVS--VVSWNVMIAGYG 329

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           +     + I+  + M  +G +PDE+ +V ++ AC  +G ++ G + F+ M       P  
Sbjct: 330 QKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMS-----SPSL 384

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDR 362
             ++ ++    +     +A KL  EM  R
Sbjct: 385 SSWNTILSGYSQNENHKEAVKLFREMQFR 413



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 143/338 (42%), Gaps = 60/338 (17%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           T  L S L      K    GK + AH+ +S      F+ + LI+ YAK   I  +  +FD
Sbjct: 5   TTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFD 64

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP----------------------ALGL 183
           ++P ++    NA+L  YC+A        L   MP                      ALG+
Sbjct: 65  QMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGV 124

Query: 184 DY---------DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            Y          HFTL+++L AC  L   E GR+ H   I+    L N++++ ++L+ MY
Sbjct: 125 YYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIK--IGLDNNIYVGNALLGMY 182

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
            KC  +  A+Q F        G++ + + V +T+M+G    +    E  +L+  ML N  
Sbjct: 183 AKCRCIGDAIQAF--------GDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRI 234

Query: 294 KPDEVAFVTVISACSHTGQVKLGI---------EYFEWMVHDYKLEPGPEH----YSCLV 340
             D V+  +V+  CS  G  + G+         +     VH   ++ G E      + L+
Sbjct: 235 HVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLL 294

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           D+  + G +D A     EM+       SV  W  +++ 
Sbjct: 295 DMYAKNGNMDSA-----EMIFVNMPEVSVVSWNVMIAG 327



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 155/387 (40%), Gaps = 57/387 (14%)

Query: 1   NVHAHQFETGLLLICLII---FQSRLMLPYTTCR-HKKNLGTLTNCLKFLN-PR-NPLPF 54
           +VH  Q        CL I   F+S L L  +    + KN    +  + F+N P  + + +
Sbjct: 268 DVHGQQVH------CLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSW 321

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           NV+I+ + +      A++    M  HG   D     + L A     D   G+Q       
Sbjct: 322 NVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQ------- 374

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
                                       MFD +   +    N +LSGY + +     ++L
Sbjct: 375 ----------------------------MFDGMSSPSLSSWNTILSGYSQNENHKEAVKL 406

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M    +  D  TL+ +L + AG+   E GRQVHA  + +      D+++ S LI MY
Sbjct: 407 FREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHA--VSQKAVFRTDIYLASGLIGMY 464

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG V  A ++F+            D+V W SM+     N   KE    ++ M   G  
Sbjct: 465 SKCGKVEMAKRIFDRIAEL-------DIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMF 517

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           P + ++ TV+S C+    +  G +    +  +  +       S L+D+  + G++D A  
Sbjct: 518 PSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVG-SALIDMYSKCGDVDAARW 576

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHD 381
           + + ML +   + +  + G   + C D
Sbjct: 577 VFDMMLGKNTVTWNEMIHGYAQNGCGD 603


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/396 (32%), Positives = 218/396 (55%), Gaps = 12/396 (3%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N +     ++G+   AL+  S M  +GI +D+ A    L A + +   + G+++ 
Sbjct: 294 NIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIH 353

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
               +S +     V +ALI +Y++   +  A  +F     KN +  N++LSGY       
Sbjct: 354 GSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSE 413

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
               L R M   G++ ++ T++++L  CA ++  + G++ H Y++R+     + + + +S
Sbjct: 414 EASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRA-GFKDYLLLWNS 472

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L++MY + G V +A ++F+    R       D V +TS++  YG  G  +E +KL++ M 
Sbjct: 473 LVDMYARSGKVLEAKRLFDSISRR-------DEVTYTSLIAGYGIQGEGREALKLFDEMK 525

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
               KPD V  V V+SACSH+G V  GI+ FE M   Y + P  EH++C+VDL  RAG L
Sbjct: 526 KRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLL 585

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            KA ++I  M  R     S +MW  LL AC   G  E+G+ AA+K LE+ P N G YV++
Sbjct: 586 HKAKEMITRMPYR----PSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLI 641

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +N+YA    W ++ ++R  M++ G++K  GC+W++V
Sbjct: 642 ANMYAAAGCWSKLAKVRTYMRDLGVRKAPGCAWVDV 677



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 210/493 (42%), Gaps = 93/493 (18%)

Query: 12  LLICLIIFQSRLMLP-----YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS 66
           L+I L   Q  +++P     YT      +  T+T     L+P   LP+N++IS + RNG 
Sbjct: 118 LIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHP---LPWNLLISSYVRNGL 174

Query: 67  PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS--GWLSSVFVG 124
              AL  +  M   GI  D +   S L A     D  FGK++ A +  S  GW  ++FV 
Sbjct: 175 HGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGW--NLFVH 232

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW---------------- 168
           ++L+ +YAK   +  A  +F+ +  ++ V  N ++SGY    +W                
Sbjct: 233 NSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIE 292

Query: 169 ---------AGG----------LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
                    AGG          LEL+  M + G+D D       L AC+ + A + GR++
Sbjct: 293 LNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREI 352

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H   IR   +  ++V  +++LI MY +C  +  A  +F       +    K+++ W SML
Sbjct: 353 HGSAIRSFYDGVDNV--KNALITMYSRCKYLRHAYNLF-------QSTRTKNIITWNSML 403

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
             Y      +E   L+  ML++G +P+ V   +++  C+    ++ G E+  +++     
Sbjct: 404 SGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGF 463

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR---------------GHGSSSVSMWG- 373
           +     ++ LVD+  R+G++ +A +L + +  R               G G  ++ ++  
Sbjct: 464 KDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDE 523

Query: 374 --------------ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419
                         A+LSAC   G    G     K  EL P   GI   L +     CM 
Sbjct: 524 MKKRHIKPDHVTMVAVLSACSHSGLVTEG----IKLFELMPSAYGIIPRLEHFA---CMV 576

Query: 420 DEIGQLRELMKEK 432
           D  G+   L K K
Sbjct: 577 DLFGRAGLLHKAK 589



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 28/275 (10%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSS------------LTASTSVKDARFGKQV 108
           F   G+ L A KTFS +  H       A CS+            L +  ++K    GKQ+
Sbjct: 63  FASQGNLLKAFKTFSLIQRH-------ASCSTSDDVVLHSVSSLLLSCVNLKSLSQGKQL 115

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              +   G+     +   L+  Y    L+ DA  + +   + + +  N L+S Y    L 
Sbjct: 116 HTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLH 175

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L   + M   G+  D FT  ++L+AC       FG+++HA +   C  LG ++F+ +
Sbjct: 176 GEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASC--LGWNLFVHN 233

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL+ MY K G ++ A  +F       E  + +D V W +M+  Y   G +KE  +L+  M
Sbjct: 234 SLVSMYAKTGELSTARCLF-------ENMLERDDVSWNTMISGYASKGMWKEAFELFGKM 286

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            + G + + + + T+   C  +G  +  +E    M
Sbjct: 287 RVEGIELNIITWNTIAGGCVQSGNFEEALELLSHM 321


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 142/439 (32%), Positives = 226/439 (51%), Gaps = 41/439 (9%)

Query: 33  KKN-LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           K+N LG        +  R+ + +N +IS + + G    A + F+   +  +F  T A+ S
Sbjct: 213 KRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWT-AMVS 271

Query: 92  SLTASTSVKDAR-------FGKQVQAHVTKSGWLS-----------------SVFVGSAL 127
               +  V +AR          ++  +   +G++                  ++   + +
Sbjct: 272 GYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTM 331

Query: 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
           I  Y +   I  A  +FD +P ++ V   A++SGY +   +   L +   M   G   + 
Sbjct: 332 ITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNR 391

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
            T S  L  CA ++A E G+QVH  +++     G   F+ ++L+ MY KCG   +A  VF
Sbjct: 392 STFSCALSTCADIAALELGKQVHGQVVKAGFETG--CFVGNALLGMYFKCGSTDEANDVF 449

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
                  EG   KDVV W +M+  Y R+G+ ++ + L+E+M   G KPDE+  V V+SAC
Sbjct: 450 -------EGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSAC 502

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM-LDRGHGS 366
           SH+G +  G EYF  M  DY ++P  +HY+C++DLL RAG L++A  L+  M  D G  S
Sbjct: 503 SHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAAS 562

Query: 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLR 426
                WGALL A    G  ELG+ AA+   +++P N G+YV+LSNLYA    W ++G++R
Sbjct: 563 -----WGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMR 617

Query: 427 ELMKEKGLKKDVGCSWIEV 445
             M+E G++K  G SW+EV
Sbjct: 618 SKMREAGVQKVTGYSWVEV 636



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/408 (19%), Positives = 170/408 (41%), Gaps = 60/408 (14%)

Query: 34  KNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           + LG        +  ++ + +N ++S + +NG    A + F+ M  H   +    L ++ 
Sbjct: 122 RRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM-PHRNSISWNGLLAAY 180

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
             +  +K+AR   + Q++     W       + L+  Y K  ++ DA  +FD +PV++ +
Sbjct: 181 VHNGRLKEARRLFESQSNWELISW-------NCLMGGYVKRNMLGDARQLFDRMPVRDVI 233

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ----- 208
             N ++SGY +    +    L    P      D FT +A++         +  R+     
Sbjct: 234 SWNTMISGYAQVGDLSQAKRLFNESPIR----DVFTWTAMVSGYVQNGMVDEARKYFDEM 289

Query: 209 -----------VHAYMIRKCCNLGNDVFMQ---------SSLIEMYGKCGLVTKALQVFN 248
                      +  Y+  K   +  ++F           +++I  YG+ G + +A ++F+
Sbjct: 290 PVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFD 349

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           +   R       D V W +++  Y +NG+++E + ++  M  +G   +   F   +S C+
Sbjct: 350 MMPQR-------DCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCA 402

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGH 364
               ++LG +     VH   ++ G E      + L+ +  + G  D+A    N++ + G 
Sbjct: 403 DIAALELGKQ-----VHGQVVKAGFETGCFVGNALLGMYFKCGSTDEA----NDVFE-GI 452

Query: 365 GSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
               V  W  +++  A H  G+  L    + K   + P  + +  +LS
Sbjct: 453 EEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLS 500



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 183/461 (39%), Gaps = 79/461 (17%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y   + +       + +KF +P + + +N  IS   RNG    AL+ F+ M         
Sbjct: 23  YYRSKRRSTNSYSPSSVKFKDP-DIVTWNKAISSHMRNGHCDSALRVFNSMPRRS----- 76

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
            ++  +   S  +++A+F   +   +        +F  + ++  Y +   + +A  +FD 
Sbjct: 77  -SVSYNAMISGYLRNAKF--SLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDL 133

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA---CAGLSAA 203
           +P K+ V  NA+LSGY +        E+   MP      +  + + LL A      L  A
Sbjct: 134 MPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP----HRNSISWNGLLAAYVHNGRLKEA 189

Query: 204 E--FGRQVHAYMIRKCCNLG--------------------NDVFMQSSLIEMYGKCGLVT 241
              F  Q +  +I   C +G                     DV   +++I  Y + G ++
Sbjct: 190 RRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLS 249

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           +A ++FN      E  I +DV  WT+M+  Y +NG   E  K ++ M +     +E+++ 
Sbjct: 250 QAKRLFN------ESPI-RDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK----NEISYN 298

Query: 302 TVISACSHTGQVKLGIEYFE---------W--MVHDYKLEPGPEHYSCLVDLL------- 343
            +++      ++ +  E FE         W  M+  Y    G      L D++       
Sbjct: 299 AMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVS 358

Query: 344 --------CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
                    + G  ++A  +  EM   G  SS+ S +   LS C D    ELGK    + 
Sbjct: 359 WAAIISGYAQNGHYEEALNMFVEMKRDGE-SSNRSTFSCALSTCADIAALELGKQVHGQV 417

Query: 396 LELDPHNVGIYV--MLSNLYAKFCMWDEIGQLRELMKEKGL 434
           ++      G +V   L  +Y K    DE   + E ++EK +
Sbjct: 418 VKAG-FETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDV 457


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 115/326 (35%), Positives = 194/326 (59%), Gaps = 13/326 (3%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           ++   +A+I  Y K      A+++FD+IP ++    NA+++GY +       L+L   M 
Sbjct: 160 NIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQML 219

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
            +G+  DH TL ++L AC+ L++ + GR+ H  +++      + + + ++LI MY KCG 
Sbjct: 220 KMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLK--SGYESRISICNALITMYCKCGS 277

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           +  +   F    H        DVV W +M+  + R+G++   +  +  M  N  +PD + 
Sbjct: 278 ILDSELAFRQIDH-------PDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGIT 330

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           F++++SAC H G+V   + +F  M+  YK+ P PEH++CLVD+L R G+++KA+K+I EM
Sbjct: 331 FLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEM 390

Query: 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419
                  +   +WGALL+ACH     +LG+LAA+K +EL+P N G YV+LSN+YA   MW
Sbjct: 391 ----PFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMW 446

Query: 420 DEIGQLRELMKEKGLKKDVGCSWIEV 445
            E+ ++R LM+E+G+KK    SW+E+
Sbjct: 447 GEVTRVRGLMREQGVKKQPAYSWMEI 472



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 76/149 (51%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +N +I+ + +NGS   ALK  S M   G+  D   L S LTA +S+   + G++ 
Sbjct: 190 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 249

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V KSG+ S + + +ALI +Y K   I D+EL F +I   + V  NA+++ +     +
Sbjct: 250 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFY 309

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRAC 197
              L     M +  ++ D  T  +LL AC
Sbjct: 310 DRALASFGEMRSNRVEPDGITFLSLLSAC 338



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 33/254 (12%)

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           +++ +F  +P KN V  N++++G  E +      +  + MP       +  +S L+R   
Sbjct: 24  ESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVR--- 80

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
                E   ++   M R+      +V   +++++ Y K G + +A  +FN          
Sbjct: 81  -YDRVEEASRLFEEMPRR------NVISYTAMVDGYAKIGEIEQARALFNCMPQ------ 127

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE--VAFVTVISA-CSHTGQVKL 315
            K+VV WT M+  Y  NG F E   L+E M      PD+  VA   +I+  C      K 
Sbjct: 128 -KNVVSWTVMISGYVENGKFDEAENLFEQM------PDKNIVAMTAMITGYCKEGKTDKA 180

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
            I + +    D         ++ ++    + G  ++A KL ++ML  G      ++  ++
Sbjct: 181 KILFDQIPCRDLA------SWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLI-SV 233

Query: 376 LSACHDCGKFELGK 389
           L+AC      + G+
Sbjct: 234 LTACSSLASLQEGR 247



 Score = 38.5 bits (88), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 81/177 (45%), Gaps = 21/177 (11%)

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           +D V W S++  Y +NG F E  +L+  M         V++ ++I+ C    ++    +Y
Sbjct: 4   RDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNV----VSWNSMIAGCIEDERIDEAWQY 59

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           F+ M      +     ++ ++  L R   +++A +L  EM  R     +V  + A++   
Sbjct: 60  FQAMP-----QRNTASWNAMISGLVRYDRVEEASRLFEEMPRR-----NVISYTAMVD-- 107

Query: 380 HDCGKFELGKLAAQKALE--LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
              G  ++G++   +AL   +   NV  + ++ + Y +   +DE   L E M +K +
Sbjct: 108 ---GYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNI 161


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 138/402 (34%), Positives = 215/402 (53%), Gaps = 24/402 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQ 107
           R+ + +N ++S     G     L  F  M    G   +   L S ++A   +     GK 
Sbjct: 203 RDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKS 262

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL-----SGY 162
           +   V K G      V ++LI++Y KL  +  A  +F+E+PV++ V  N+++     +GY
Sbjct: 263 LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY 322

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            E      G++L  LM   G++ D  T+ ALLRAC           +HAY+ R  C    
Sbjct: 323 AEK-----GMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR--CGFNA 375

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D+ + ++L+ +Y K G +  +  +F       E   ++D + WT+ML  Y  +   +E I
Sbjct: 376 DIIIATALLNLYAKLGRLNASEDIF-------EEIKDRDTIAWTAMLAGYAVHACGREAI 428

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           KL++ M+  G + D V F  ++SACSH+G V+ G +YFE M   Y++EP  +HYSC+VDL
Sbjct: 429 KLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDL 488

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L R+G L+ A++LI  M        S  +WGALL AC   G  ELGK  A++ L LDP +
Sbjct: 489 LGRSGRLEDAYELIKSM----PMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSD 544

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
              Y+MLSN+Y+   +W    ++R LMKE+ L ++ GCS+IE
Sbjct: 545 HRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIE 586



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 151/317 (47%), Gaps = 23/317 (7%)

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           +L  ++++ TSV    +   + A V KS   S  F+G  L+ +Y KL    DA+ +FDE+
Sbjct: 144 SLVFAISSCTSVS---YCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 200

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           P ++ V  N+L+SG          L    R+    G   +  TL +++ ACA + A + G
Sbjct: 201 PNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEG 260

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           + +H  +++    +     + +SLI MYGK G +  A Q+F       E    + +V W 
Sbjct: 261 KSLHGVVVK--LGMSGKAKVVNSLINMYGKLGFLDAASQLF-------EEMPVRSLVSWN 311

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           SM+ ++  NGY ++ + L+  M   G  PD+   V ++ AC+ TG  +   E     +H 
Sbjct: 312 SMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA-ESIHAYIHR 370

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGK 384
                     + L++L  + G L+ +  +  E+ DR         W A+L+  A H CG+
Sbjct: 371 CGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDR-----DTIAWTAMLAGYAVHACGR 425

Query: 385 --FELGKLAAQKALELD 399
              +L  L  ++ +E+D
Sbjct: 426 EAIKLFDLMVKEGVEVD 442


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 131/397 (32%), Positives = 220/397 (55%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N ++     +G    AL     M   G   D++ L S L       D R G ++
Sbjct: 136 KDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMEL 195

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
               T++G+   VFVGS+LID+YA       +  +FD +PV++++  N++L+G  +    
Sbjct: 196 HGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSV 255

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L R M   G+     T S+L+ AC  L++   G+Q+HAY+IR       +VF+ S
Sbjct: 256 DEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRG--GFDGNVFISS 313

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG V+ A ++F+    R++   + D+V WT+M+  +  +G  +E + L++ M
Sbjct: 314 SLIDMYCKCGNVSIARRIFD----RIQ---SPDIVSWTAMIMGHALHGPAREALVLFDRM 366

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            +   KP+ + F+ V++ACSH G V  G +YF  M   Y + P  EH++ L D L R G+
Sbjct: 367 ELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGK 426

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A+  I+ M  +     + S+W  LL AC       L +  A+K  +L+P ++G +++
Sbjct: 427 LEEAYNFISGMKIK----PTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHII 482

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN Y+    W+E   LR+ M++KG++K+  CSWIEV
Sbjct: 483 LSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEV 519



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 149/332 (44%), Gaps = 50/332 (15%)

Query: 76  FMHVHGIFL-----DTYALCSSLTAS--------TSVKDARFGKQVQAHVTKSGWLSSVF 122
           F H   +FL     D  A CSS+  S         ++     G  + A   +SG  +  F
Sbjct: 35  FHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGAFADRF 94

Query: 123 VGSALIDLYAKL--------------LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +AL++LY KL              +++     +FDE+P K+ V  N L+ G  E+   
Sbjct: 95  AANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRH 154

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L LVR M   G   D FTLS++L   A  +    G ++H +  R      +DVF+ S
Sbjct: 155 GEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRN--GFHDDVFVGS 212

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY  C     +++VF+    R       D +LW SML    +NG   E + L+  M
Sbjct: 213 SLIDMYANCTRTDYSVKVFDNLPVR-------DAILWNSMLAGCAQNGSVDEALGLFRRM 265

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLC 344
           L +G KP  V F ++I AC +   + LG +     +H Y +  G +      S L+D+ C
Sbjct: 266 LHSGIKPMPVTFSSLIPACGNLASLLLGKQ-----LHAYVIRGGFDGNVFISSSLIDMYC 320

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           + G +  A ++ + +      S  +  W A++
Sbjct: 321 KCGNVSIARRIFDRI-----QSPDIVSWTAMI 347


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 135/414 (32%), Positives = 212/414 (51%), Gaps = 18/414 (4%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY-ALCSSL 93
           N     N    +  R+   +  +IS   ++  P  AL+ +  M  H         + S+L
Sbjct: 199 NFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSAL 258

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            AS ++     GK++  H+ + G  S   V  +L+D+Y K   I +A  +FD++  ++ V
Sbjct: 259 AASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVV 318

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
               ++  Y +      G  L R +    +  + FT + +L ACA L+A + G+Q+HAYM
Sbjct: 319 SWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYM 378

Query: 214 IRKCCNLGNDVFMQ--SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           +R    +G D F    S+L+ MY KCG +  A  VF +           D+  WTS+L  
Sbjct: 379 VR----VGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQ-------PDLFSWTSLLVG 427

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           Y ++G   + +  +E +L +GTKPD +AF+ V+SAC+H G V  G+EYF  +   + L  
Sbjct: 428 YAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTR 487

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
             +HY+C++DLL RAG+  +A  +INEM  +        +W ALL  C   G  EL K A
Sbjct: 488 TIDHYACIIDLLARAGQFTEAESIINEMPIK----PDKYIWAALLGGCRIHGNLELAKRA 543

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A+   E++P N   YV L+N+YA   M  E   +RE M  +G+ K  G SWIE+
Sbjct: 544 AKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEI 597



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 154/350 (44%), Gaps = 81/350 (23%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GKQV AH+  SG +  +++ + L+D+YAK   + DAE +FDE+  ++    N ++SGY +
Sbjct: 138 GKQVHAHIKTSGSIG-LYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVK 196

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE-------------------- 204
              +     L   MP    + D+F+ +A++  C   +  E                    
Sbjct: 197 GGNFEKARNLFDKMP----NRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKC 252

Query: 205 ----------------FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
                            G+++H +++R    L +D  +  SL++MYGKCG + +A  +F+
Sbjct: 253 TISSALAASAAIPSLHMGKKIHGHIMR--MGLDSDEVVWCSLLDMYGKCGSIEEARYIFD 310

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               R       DVV WT+M+  Y +NG  +E   L+  ++ +   P++  F  V++AC+
Sbjct: 311 KMEER-------DVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACA 363

Query: 309 -----------HTGQVKLGIEYF----EWMVHDY-------------KLEPGPEHYS--C 338
                      H   V++G + F      +VH Y             ++ P P+ +S   
Sbjct: 364 DLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTS 423

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           L+    + G+ DKA      +L  G     ++  G +LSAC   G  + G
Sbjct: 424 LLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIG-VLSACAHAGLVDKG 472



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 114/258 (44%), Gaps = 34/258 (13%)

Query: 156 NALLSGYCEAKLWAGGLELV----RLMPALGLDYDHFTLSA-----LLRACAGLSAAEFG 206
           +A ++  C++KL+   ++++    RL  A+ L Y      A     LL+ C    A + G
Sbjct: 79  DAYINRLCDSKLFKEAIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEG 138

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           +QVHA+ I+   ++G  +++ + L++MY KCG +  A +VF+   HR       D+  W 
Sbjct: 139 KQVHAH-IKTSGSIG--LYISNRLLDMYAKCGSLVDAEKVFDEMVHR-------DLCSWN 188

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-H 325
            M+  Y + G F++   L++ M       D  ++  +IS C    + +  +E +  M  H
Sbjct: 189 IMISGYVKGGNFEKARNLFDKM----PNRDNFSWTAIISGCVQHNRPEEALELYRLMQKH 244

Query: 326 DYKLEPGPEHYSCLVDLLCRAG----ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
           DY      +   C +     A      L    K+   ++  G  S  V +W +LL     
Sbjct: 245 DY-----SKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEV-VWCSLLDMYGK 298

Query: 382 CGKFELGKLAAQKALELD 399
           CG  E  +    K  E D
Sbjct: 299 CGSIEEARYIFDKMEERD 316


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 213/371 (57%), Gaps = 20/371 (5%)

Query: 82  IFLDTYA----LCSSLTASTS-VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           + +D+Y+    L + + ASTS V  +   +++ AH  + G+     V + LID YAKL +
Sbjct: 176 VPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDCYAKLGI 235

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALL 194
           +  AE +F  +P +N V   A++  Y + +     + L + M A   D   +  T+  +L
Sbjct: 236 VSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVCIL 295

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            A AG++A   G+ +HAY++R+     + V + ++L+ MY KCG +     +F+L GHR 
Sbjct: 296 HAFAGVNALGQGKLLHAYILRR--GFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHR- 352

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                KDVV W +++  YG +G+  E ++++E M   G  P+ + F++V+ ACSH G V 
Sbjct: 353 -----KDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVD 407

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G   FE MV DY + P  EHY+C+VDLL RAG LD+A +LI  M    H   S  +WG+
Sbjct: 408 EGKRLFESMV-DYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGM----HIRPSPQVWGS 462

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL AC      E  ++A  +  +L+P N G YV+L+++YA+  +  E+G L++L++E  L
Sbjct: 463 LLGACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHAL 522

Query: 435 KKDVGCSWIEV 445
           +K  GCSWIEV
Sbjct: 523 EKVPGCSWIEV 533



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 24/234 (10%)

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           + S  F+ + LID YA L  +  A  +FDE PVK+    NALL     A      L  + 
Sbjct: 110 FRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLA 169

Query: 177 LMPALGLDYDHFTLSALLRACAGLS-----AAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
            M  L +  D ++ +  L+AC   S     A+   R++HA+ +R+   L   V   ++LI
Sbjct: 170 DMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHV--ATTLI 227

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           + Y K G+V+ A  VF     R       +VV WT+M+G Y +N    + I L++ M+ +
Sbjct: 228 DCYAKLGIVSYAESVFATMPER-------NVVSWTAMIGCYAKNERPGDAILLFQEMVAS 280

Query: 292 GTK--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
                P+ V  V ++ A +    +  G      ++H Y L  G   +  LV +L
Sbjct: 281 DEDLVPNSVTIVCILHAFAGVNALGQG-----KLLHAYILRRG---FDSLVSVL 326


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 144/445 (32%), Positives = 226/445 (50%), Gaps = 48/445 (10%)

Query: 35  NLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
            LG L    + L+    RN + +  +++   + G+   A+  +S M   G   +     S
Sbjct: 324 ELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSS 383

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L A  S++D R G+++     K    ++VFV SALID+Y K   + DA+++F  +P KN
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKN 443

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPAL------------------------------ 181
            VC N+L+SGY          EL + MPA                               
Sbjct: 444 IVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLA 503

Query: 182 -GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G      T S++L ACA L + E G+ VHA +I+    +   +F+ ++L +MY K G +
Sbjct: 504 SGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIK--LGIKESIFVGTALSDMYAKSGDL 561

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             + +VF     R       + V WT+M+     NG+ +E I L+E M+  G  P+E  F
Sbjct: 562 DSSKRVFYEMPKR-------NDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTF 614

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + ++ ACSH+G V+  + YFE M+    + P  +HY+C+VD+L RAG L +A  L+ ++ 
Sbjct: 615 LAILFACSHSGLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIE 673

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +   +S    W ALLSAC+     E+G+ AA++  ELD  N   YV+LSN+YA    W 
Sbjct: 674 SKSEANS----WAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWK 729

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
           +  ++R LMK   LKKD GCSW+++
Sbjct: 730 DAAEMRILMKGINLKKDGGCSWVQI 754



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 55/294 (18%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           SV   + ++D   K   + DA  ++ + P+ +     A+++G+   +L    L +   M 
Sbjct: 178 SVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEML 237

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL-GNDVFMQSSLIEMYGKCG 238
           + G+  +  TL ++++AC G  A EF   +    +    NL   ++ +++SLI +Y + G
Sbjct: 238 SCGVSPNEITLVSVIKACIG--AGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKG 295

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG-----------------RN------ 275
               A ++F+      E E+ +DVV WT++L VY                  RN      
Sbjct: 296 DADAARRMFD------EMEV-RDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGT 348

Query: 276 --------GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
                   G  KE + LY  ML +G +P+   F +V+ AC+    ++ G +     +H+ 
Sbjct: 349 LVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK-----IHNQ 403

Query: 328 KLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            L+    +     S L+D+ C+  +L  A     +M+       ++  W +L+S
Sbjct: 404 TLKMACSNNVFVSSALIDMYCKCKQLPDA-----QMIFYSLPQKNIVCWNSLIS 452


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/400 (32%), Positives = 216/400 (54%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +N +IS + +NG        F  M       +   L + L+    + D   G
Sbjct: 188 MRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMG 247

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            +++         S++ V +A++++Y K   + D  L+FD +  ++ V  +A+++GY + 
Sbjct: 248 LRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQN 307

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 LEL   M +  +  +  TL ++L ACA L + E G ++ +Y+  +   L ++V+
Sbjct: 308 GRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESR--GLISNVY 365

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L+ MY KCG + KA Q+F+    R       D V W SM+     NG+ ++ I LY
Sbjct: 366 VASALLGMYSKCGNIIKARQIFDKLPQR-------DNVTWNSMIMGLAINGFAEDAIALY 418

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M     KP+ + FV +++AC+H G V+LG+E+F  M  D+ + P  EH++C+VDL CR
Sbjct: 419 NRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCR 478

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           +G L  A++ I  M        +V +WG LLSA       EL +LA +K LEL+P N G 
Sbjct: 479 SGRLIDAYEFICRM----EVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGN 534

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           YV+LSN+YA    W E  ++R+LMK+K ++K    SW+EV
Sbjct: 535 YVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEV 574



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 170/367 (46%), Gaps = 48/367 (13%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           AL+TF  MH + + +  + +     +  S+     GKQV + V + G+ SSVF  +ALI+
Sbjct: 80  ALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALIN 139

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL------ 183
            YAK+  +  AEL+FD I VK+++  N L+S Y  +       EL   M    +      
Sbjct: 140 FYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAM 199

Query: 184 --------DY-----------------DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
                   DY                 +  TL+ +L  CA L   E G ++      K  
Sbjct: 200 ISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNK-- 257

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
           NLG+++ + ++++EMY KCG V     VF+    R       DVV W++M+  Y +NG  
Sbjct: 258 NLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARR-------DVVTWSAMIAGYAQNGRS 310

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
            E ++L+E M     KP++V  V+V+SAC+  G V+ G E     V    L       S 
Sbjct: 311 NEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETG-ERIGSYVESRGLISNVYVASA 369

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKAL 396
           L+ +  + G + KA ++ +++  R + +     W +++   A +   +  +      K +
Sbjct: 370 LLGMYSKCGNIIKARQIFDKLPQRDNVT-----WNSMIMGLAINGFAEDAIALYNRMKEI 424

Query: 397 ELDPHNV 403
           E+ P+N+
Sbjct: 425 EVKPNNI 431


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/394 (32%), Positives = 215/394 (54%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           ++ +IS + ++     A + F  M    +  + ++L   L A  ++     G+Q+     
Sbjct: 318 WSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAI 377

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+ S +FVG+AL+D+YAK   + ++  +F  +   N V  N ++ GYC++      L 
Sbjct: 378 KLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALS 437

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M A  +     T S++LRACA  S+ +   Q+H+ + +   N  ND  + +SLI+ 
Sbjct: 438 VFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFN--NDTIVCNSLIDT 495

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  AL+VF       E  +  DVV W S++  Y  +G     ++L++ M  +  
Sbjct: 496 YAKCGFIRDALKVF-------ESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDI 548

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           K ++V FV+++S C  TG V  G+  F  M+ D++++P  EHY+C+V LL RAG L  A 
Sbjct: 549 KANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDAL 608

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           K I ++      + S  +W ALLS+C       LG+ AA+K L+++PH+   YV+LSN+Y
Sbjct: 609 KFIGDI----PSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMY 664

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A   + DE+   R+ M+  G+KK+ G SW+E+ G
Sbjct: 665 AAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKG 698



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 169/333 (50%), Gaps = 21/333 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  ++S +  N  P YAL TFS M + G   + + L S+L A+  +  A  GK +
Sbjct: 212 KDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGI 271

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K+ + +   VG AL+D+YAK   I DA  +F+ IP  + +  + L+S Y ++   
Sbjct: 272 HGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQN 331

Query: 169 AGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVF 225
               E+ +R+M +  +  + F+LS +L+ACA ++  E G Q+H   I+    LG  +++F
Sbjct: 332 EQAFEMFLRMMRSFVVP-NEFSLSGVLQACANIAFLELGEQIHNLAIK----LGYESELF 386

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L++MY KC  +  +L++F+          + + V W +++  Y ++G+ ++ + ++
Sbjct: 387 VGNALMDMYAKCRNMENSLEIFSSLQ-------DANEVSWNTIIVGYCQSGFAEDALSVF 439

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M        +V F +V+ AC++T  +K  ++    ++            + L+D   +
Sbjct: 440 HEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHS-LIEKSTFNNDTIVCNSLIDTYAK 498

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            G +  A K+   +++       V  W +++SA
Sbjct: 499 CGFIRDALKVFESIVE-----CDVVSWNSIISA 526



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 141/314 (44%), Gaps = 29/314 (9%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV--FVGSALIDLYAKLLLIHDAE 141
           LD+YA    L    +  DAR G+ V A V + G ++ +  F  + L++ YAKL  +  A 
Sbjct: 43  LDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATAR 102

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            +FD +P +N V    L+ GY     +   LEL R +   G + +HF L+ +L+    + 
Sbjct: 103 RLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMD 162

Query: 202 AAEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           A      +HA      C LG+D   F+ ++LI+ Y  CG V  A  VF       +G + 
Sbjct: 163 APGLACGIHAC----ACKLGHDRNAFVGTALIDAYSLCGAVCHARCVF-------DGIVG 211

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           KD V WT+M+  Y  N   +  +  +  M M G KP+     + + A        LG   
Sbjct: 212 KDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGI 271

Query: 320 FEWMVHD-YKLEPGPEHY-SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
               V   Y  EP   H    L+D+  + G+++ A   I EM+        V +W  L+S
Sbjct: 272 HGCSVKTLYDTEP---HVGGALLDMYAKCGDIEDA-HAIFEMIPH----DDVILWSFLIS 323

Query: 378 ----ACHDCGKFEL 387
               +C +   FE+
Sbjct: 324 RYAQSCQNEQAFEM 337



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 151/330 (45%), Gaps = 18/330 (5%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           L T       +  RN + F  ++  +   G    AL+ F  +   G  ++ + L + L  
Sbjct: 98  LATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKV 157

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
             ++        + A   K G   + FVG+ALID Y+    +  A  +FD I  K++V  
Sbjct: 158 LVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTW 217

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
            A++S Y E  +    L     M   G   + F L++ L+A   LS+A  G+ +H   ++
Sbjct: 218 TAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVK 277

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
              +   +  +  +L++MY KCG +  A  +F +  H        DV+LW+ ++  Y ++
Sbjct: 278 TLYD--TEPHVGGALLDMYAKCGDIEDAHAIFEMIPH-------DDVILWSFLISRYAQS 328

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
              ++  +++  M+ +   P+E +   V+ AC++   ++LG +     +H+  ++ G E 
Sbjct: 329 CQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQ-----IHNLAIKLGYES 383

Query: 336 Y----SCLVDLLCRAGELDKAWKLINEMLD 361
                + L+D+  +   ++ + ++ + + D
Sbjct: 384 ELFVGNALMDMYAKCRNMENSLEIFSSLQD 413



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 133/337 (39%), Gaps = 55/337 (16%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           LM  Y  CR+ +N   + + L+     N + +N +I  +C++G    AL  F  M    +
Sbjct: 391 LMDMYAKCRNMENSLEIFSSLQ---DANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHM 447

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
                   S L A  +    +   Q+ + + KS + +   V ++LID YAK   I DA  
Sbjct: 448 LSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALK 507

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F+ I   + V  N+++S Y         LEL   M    +  +  T  +LL  C     
Sbjct: 508 VFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVC----- 562

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN--LAGHRLEGEINK 260
                                           G  GLV + L +FN  +  HR++  +  
Sbjct: 563 --------------------------------GSTGLVNQGLWLFNSMMMDHRIKPSMEH 590

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
               +T ++ + GR G   + +K    +    + P  + +  ++S+C     V LG  Y 
Sbjct: 591 ----YTCIVRLLGRAGRLTDALKFIGDI---PSTPSPMVWRALLSSCVVHKNVALG-RYA 642

Query: 321 EWMVHDYKLEPGPE-HYSCLVDLLCRAGELDKA--WK 354
              V D  +EP  E  Y  L ++   AG LD+   W+
Sbjct: 643 AEKVLD--IEPHDETTYVLLSNMYAAAGILDEVALWR 677


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 234/433 (54%), Gaps = 29/433 (6%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLN--PR-NPLPFNVVISDFCRNGSPLYALKTFSFM 77
           S L+  Y+ C      G +   ++  +  PR + + ++ +++ F   G P+ AL  +S M
Sbjct: 146 SALLHLYSRC------GAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRM 199

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
             HG+  D   +   + A  S  +AR G  V   + +      V   ++L+ +YAK   +
Sbjct: 200 REHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHL 259

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
             A  +F  +P +N V  +AL+SG+ +       L+L R + A GL    + L + L AC
Sbjct: 260 DVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLAC 319

Query: 198 AGLSAAEFGRQVHAYMIRKC---CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
           A +   + G+ +H +++R+    C LG      +++++MY KCG +  A ++FN    R 
Sbjct: 320 ASVGFLKLGKSIHGFILRRLEWQCILG------TAVLDMYSKCGSLESARKLFNKLSSR- 372

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                 D+VLW +++   G +G   + + L++ +   G KPD   F +++SA SH+G V+
Sbjct: 373 ------DLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVE 426

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G  +F+ M+ ++ +EP  +HY C+VDLL R+G +++A    N+ML       ++++W  
Sbjct: 427 EGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEA----NDMLASMQTEPTIAIWVI 482

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LLS C +  K ELG+  A+K LEL P ++G+  ++SNLYA    WD++ ++R+LMK+ G 
Sbjct: 483 LLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGS 542

Query: 435 KKDVGCSWIEVTG 447
           KK  G S IEV G
Sbjct: 543 KKVPGYSLIEVKG 555



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 169/361 (46%), Gaps = 19/361 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++S   R G+P  AL+ F  +       ++     +LTA   + D    + V+    
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPSSA-RPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            +G+   VFV SAL+ LY++   + +A  +FD +P K+ V  + +++G+  A      L 
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M   G+  D   +  +++AC     A  G  VH  ++R C  +  DV   +SL+ M
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRM--DVVTTTSLVSM 252

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G +  A QVF +  +R       + V W++++  + +NG   E + L+  +  +G 
Sbjct: 253 YAKNGHLDVACQVFRMMPYR-------NDVTWSALISGFAQNGRAVEALDLFRELQADGL 305

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +P   A V+ + AC+  G +KLG     +++   +LE      + ++D+  + G L+ A 
Sbjct: 306 QPCSWALVSALLACASVGFLKLGKSIHGFILR--RLEWQCILGTAVLDMYSKCGSLESAR 363

Query: 354 KLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
           KL N++      S  + +W A+++ C  H CG   L          + P +     +LS 
Sbjct: 364 KLFNKL-----SSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSA 418

Query: 412 L 412
           L
Sbjct: 419 L 419


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 209/376 (55%), Gaps = 13/376 (3%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           AL+ FS +H  G   D   L ++  A   +     GKQ+ AH  K+G+ S + V S ++D
Sbjct: 14  ALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILD 73

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y K   + +A ++F+ I   + V   +++SG  +       L +   M    +  D +T
Sbjct: 74  MYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYT 133

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
            + L++A + ++A E GRQ+HA +I+  C   +D F+ +SL++MY KCG +  A ++F  
Sbjct: 134 FATLIKASSCVTALEQGRQLHANVIKLDC--VSDPFVGTSLVDMYAKCGNIEDAYRLFKK 191

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
              R       ++ LW +ML    ++G  +E + L+++M  +G +PD V+F+ ++SACSH
Sbjct: 192 MNVR-------NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 244

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
            G      EY   M +DY +EP  EHYSCLVD L RAG + +A K+I  M  +    +S 
Sbjct: 245 AGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFK----ASA 300

Query: 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
           S+  ALL AC   G  E GK  A +   L+P +   YV+LSN+YA    WD++   R++M
Sbjct: 301 SINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMM 360

Query: 430 KEKGLKKDVGCSWIEV 445
           K K +KKD G SWI+V
Sbjct: 361 KRKNVKKDPGFSWIDV 376



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 10/262 (3%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HAH  + G      +   S ++  Y  C    N G + N   +++  + + +  +IS 
Sbjct: 51  QIHAHAIKAGF--DSDLHVNSGILDMYIKCGDMVNAGIVFN---YISAPDDVAWTSMISG 105

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
              NG+   AL+ +  M    +  D Y   + + AS+ V     G+Q+ A+V K   +S 
Sbjct: 106 CVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSD 165

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            FVG++L+D+YAK   I DA  +F ++ V+N    NA+L G  +       + L + M +
Sbjct: 166 PFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKS 225

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYGKCG 238
            G++ D  +   +L AC   S A    + + Y+     + G +  ++  S L++  G+ G
Sbjct: 226 HGIEPDRVSFIGILSAC---SHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAG 282

Query: 239 LVTKALQVFNLAGHRLEGEINK 260
           LV +A +V      +    IN+
Sbjct: 283 LVQEADKVIETMPFKASASINR 304



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 119/257 (46%), Gaps = 21/257 (8%)

Query: 158 LLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           ++ GY         LEL  L+   G   D  TL+   +AC  L   + G+Q+HA+ I+  
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIK-- 58

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
               +D+ + S +++MY KCG +  A  VFN            D V WTSM+     NG 
Sbjct: 59  AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS-------APDDVAWTSMISGCVDNGN 111

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE--PGPEH 335
             + +++Y  M  +   PDE  F T+I A S    ++ G +    ++   KL+    P  
Sbjct: 112 EDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVI---KLDCVSDPFV 168

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQ 393
            + LVD+  + G ++ A++L  +M  R     ++++W A+L   A H   +  +    + 
Sbjct: 169 GTSLVDMYAKCGNIEDAYRLFKKMNVR-----NIALWNAMLVGLAQHGNAEEAVNLFKSM 223

Query: 394 KALELDPHNVGIYVMLS 410
           K+  ++P  V    +LS
Sbjct: 224 KSHGIEPDRVSFIGILS 240


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 144/445 (32%), Positives = 226/445 (50%), Gaps = 48/445 (10%)

Query: 35  NLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
            LG L    + L+    RN + +  +++   + G+   A+  +S M   G   +     S
Sbjct: 324 ELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSS 383

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L A  S++D R G+++     K    ++VFV SALID+Y K   + DA+++F  +P KN
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKN 443

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPAL------------------------------ 181
            VC N+L+SGY          EL + MPA                               
Sbjct: 444 IVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLA 503

Query: 182 -GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G      T S++L ACA L + E G+ VHA +I+    +   +F+ ++L +MY K G +
Sbjct: 504 SGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIK--LGIKESIFVGTALSDMYAKSGDL 561

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             + +VF     R       + V WT+M+     NG+ +E I L+E M+  G  P+E  F
Sbjct: 562 DSSKRVFYEMPKR-------NDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTF 614

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + ++ ACSH+G V+  + YFE M+    + P  +HY+C+VD+L RAG L +A  L+ ++ 
Sbjct: 615 LAILFACSHSGLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIE 673

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +   +S    W ALLSAC+     E+G+ AA++  ELD  N   YV+LSN+YA    W 
Sbjct: 674 SKSEANS----WAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWK 729

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
           +  ++R LMK   LKKD GCSW+++
Sbjct: 730 DAAEMRILMKGINLKKDGGCSWVQI 754



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 130/294 (44%), Gaps = 55/294 (18%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           SV   + ++D   K   + DA  ++ + P+ +     A+++G+   +L    L +   M 
Sbjct: 178 SVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEML 237

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL-GNDVFMQSSLIEMYGKCG 238
           + G+  +  TL ++++AC G  A EF   +    +    NL   ++ +++SLI +Y + G
Sbjct: 238 SCGVSPNEITLVSVIKACIG--AGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKG 295

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG-----------------RN------ 275
               A ++F+      E E+ +DVV WT++L VY                  RN      
Sbjct: 296 DADAARRMFD------EMEV-RDVVSWTALLDVYAELGDLEGARRVLDEMPERNEVSWGT 348

Query: 276 --------GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
                   G  KE + LY  ML +G +P+   F +V+ AC+    ++ G +     +H+ 
Sbjct: 349 LVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK-----IHNQ 403

Query: 328 KLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            L+    +     S L+D+ C+  +L  A     +M+       ++  W +L+S
Sbjct: 404 TLKMACSNNVFVSSALIDMYCKCKQLPDA-----QMIFYSLPQKNIVCWNSLIS 452


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 131/392 (33%), Positives = 207/392 (52%), Gaps = 13/392 (3%)

Query: 54   FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
            +N ++  +  +G    AL+ +  M   G   D   L ++  A+  +   + GKQ+ A V 
Sbjct: 1106 WNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVV 1165

Query: 114  KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            K G+   +FV S ++D+Y K   +  A  +F EIP  + V    ++SG  E       L 
Sbjct: 1166 KRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALF 1225

Query: 174  LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
                M    +  D +T + L++AC+ L+A E GRQ+HA +++  C    D F+ +SL++M
Sbjct: 1226 TYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAF--DPFVMTSLVDM 1283

Query: 234  YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
            Y KCG +  A  +F     R        +  W +M+    ++G  KE ++ ++ M   G 
Sbjct: 1284 YAKCGNIEDARGLFKRTNTRR-------IASWNAMIVGLAQHGNAKEALQFFKYMKSRGV 1336

Query: 294  KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
             PD V F+ V+SACSH+G V    E F  M  +Y +EP  EHYSCLVD L RAG +++A 
Sbjct: 1337 MPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAE 1396

Query: 354  KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
            K+I+ M       +S SM+  LL+AC      E GK  A+K L L+P +   YV+LSN+Y
Sbjct: 1397 KVISSM----PFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVY 1452

Query: 414  AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            A    W+ +   R +M++  +KKD G SW+++
Sbjct: 1453 AAANQWENVASARNMMRKVNVKKDPGFSWVDL 1484



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 152/336 (45%), Gaps = 20/336 (5%)

Query: 54   FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
            +N  +S F + G    A+  F  M    +  D       LT    +     GKQ+   V 
Sbjct: 903  WNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVM 962

Query: 114  KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            +SG    V VG+ LI++Y K   +  A  +F ++   + +  N ++SG   + L    + 
Sbjct: 963  RSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVG 1022

Query: 174  LVRLMPALGLDYDHFTLSALLRACAGLSAAEF-GRQVHAYMIRKCCNLGNDVFMQSSLIE 232
            +   +    L  D FT++++LRAC+ L    +   Q+HA  ++    L  D F+ ++LI+
Sbjct: 1023 MFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVL--DSFVSTALID 1080

Query: 233  MYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
            +Y K G + +A  +F N  G         D+  W +++  Y  +G F + ++LY  M  +
Sbjct: 1081 VYSKRGKMEEAEFLFVNQDGF--------DLASWNAIMHGYIVSGDFPKALRLYILMQES 1132

Query: 292  GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPEHYSCLVDLLCRAGELD 350
            G + D++  V    A      +K G +    +V   + L+      S ++D+  + GE++
Sbjct: 1133 GERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVT--SGVLDMYLKCGEME 1190

Query: 351  KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
             A ++ +E+      S     W  ++S C + G+ E
Sbjct: 1191 SARRVFSEI-----PSPDDVAWTTMISGCVENGQEE 1221



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 12/216 (5%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S L  + +  D   GK+  A +  SG     FV + LI +YAK   +  A  +FD  P  
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 151 NS--VCANALLSGY-CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           N   V  NA+LS     A     G  L RL+    +     TL+ + + C   ++     
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
            +H Y ++    L  DVF+  +L+ +Y K GL+ +A  +F       +G   +DVVLW  
Sbjct: 781 SLHGYAVK--IGLQWDVFVAGALVNIYAKFGLIREARVLF-------DGMAVRDVVLWNV 831

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
           M+  Y       E + L+      G +PD+V   T+
Sbjct: 832 MMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTL 867



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 119/291 (40%), Gaps = 55/291 (18%)

Query: 93   LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
            L+AS S  ++  G     +  K G    VFV  AL+++YAK  LI +A ++FD + V++ 
Sbjct: 772  LSASPSASESLHG-----YAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDV 826

Query: 153  VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
            V  N ++  Y +  L    + L       G   D  TL  L R                 
Sbjct: 827  VLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSR----------------- 869

Query: 213  MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
             + KC         + +++E+       TK L +++  G         DV++W   L  +
Sbjct: 870  -VVKC---------KKNILELKQFKAYATK-LFMYDDDG--------SDVIVWNKALSRF 910

Query: 273  GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
             + G   E +  +  M+ +    D + FV +++  +    ++LG +     +H   +  G
Sbjct: 911  LQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQ-----IHGIVMRSG 965

Query: 333  PEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
             +      +CL+++  +AG + +A  +  +M         +  W  ++S C
Sbjct: 966  LDQVVSVGNCLINMYVKAGSVSRARSVFGQM-----NEVDLISWNTMISGC 1011


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/399 (32%), Positives = 219/399 (54%), Gaps = 14/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + ++ +I+ + +NG    A   F  MH  G     +     L AS+ +     GKQ 
Sbjct: 289 RNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQA 348

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI-PVKNSVCANALLSGYCEAKL 167
              + K G+   V+V SAL+D+YAK     DA+  F ++  V + V   A+++G+ +   
Sbjct: 349 HGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGE 408

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               L L   M   G+   + T++++LRACA L+A E G+Q+HA +++  C  G    + 
Sbjct: 409 HEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILK--CGFGLGGSVG 466

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L  MY KCG +  ++ VF     R+    ++D++ W S++  + ++G  ++ + L+E 
Sbjct: 467 TALSTMYSKCGNLEDSMVVFR----RMP---DRDIISWNSIISGFSQHGRGRDALDLFEE 519

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M + G  PD + F+ V+ ACSH G V  G  YF  M  DY L P  +HY+C+VD+L RAG
Sbjct: 520 MKLEGIAPDHITFINVLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAG 579

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           +L +A   I E +   HG+    +W  +L AC     F++G  A ++ +EL   +   Y+
Sbjct: 580 QLKEAKDFI-ESITIDHGT---CLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYI 635

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           +LSN+YA    W+++ ++R LM+ +G+ KD GCSW+E+ 
Sbjct: 636 LLSNIYAAQRKWNDVERVRHLMRLRGVSKDPGCSWVELN 674



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 159/346 (45%), Gaps = 25/346 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYALCSSLTASTSVKDARFGK 106
           R+   +N +++   R+  PL AL  F  M      +    ++  +  TA+  V  A  G 
Sbjct: 82  RDVASWNSLLNPLSRH-QPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGA 140

Query: 107 QVQAHVTK---SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
              A   K   S   ++VFV +AL+++Y KL  I DA  +FD++P +N+V   A++SGY 
Sbjct: 141 VAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYA 200

Query: 164 EAKLWAGGLELVRLM-PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
             K      EL RLM     L+ + F  +A+L A +       G Q+H  +++    L  
Sbjct: 201 TGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKD--GLVG 258

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            V +++SL+ MY K   +  A+ VF  +  R       + + W++M+  Y +NG      
Sbjct: 259 FVSVENSLVTMYAKAECMDAAMAVFGSSKER-------NSITWSAMITGYAQNGEADCAA 311

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLV 340
            ++  M   G  P E  FV +++A S  G + +G +    MV   KL    + Y  S LV
Sbjct: 312 TMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMV---KLGFERQVYVKSALV 368

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           D+  + G    A    +++ D       V +W A+++     G+ E
Sbjct: 369 DMYAKCGCTGDAKDGFHQLYD----VDDVVIWTAMITGHVQNGEHE 410


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 228/429 (53%), Gaps = 48/429 (11%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110
           + +N +I+ +C  G  + AL+TFSFM     +  D + L S L+A  + +  + GKQ+ A
Sbjct: 243 VSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHA 302

Query: 111 HVTKSGWLSSVFVGSALIDLYAK---------------------------------LLLI 137
           H+ ++    +  VG+ALI +YAK                                 +  I
Sbjct: 303 HIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDI 362

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
             A  +FD +  ++ V   A++ GY +  L +  L L RLM   G   +++TL+A+L   
Sbjct: 363 DPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVI 422

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLEG 256
           + L++ + G+Q+HA  IR      + V + ++LI MY + G +  A ++FN +  +R   
Sbjct: 423 SSLASLDHGKQLHAVAIR--LEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYR--- 477

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               D + WTSM+    ++G   E I+L+E ML    KPD + +V V+SAC+H G V+ G
Sbjct: 478 ----DTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQG 533

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             YF  M + + +EP   HY+C++DLL RAG L++A+  I  M         V  WG+LL
Sbjct: 534 KSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIE----PDVVAWGSLL 589

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           S+C      +L K+AA+K L +DP+N G Y+ L+N  +    W++  ++R+ MK+K +KK
Sbjct: 590 SSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKK 649

Query: 437 DVGCSWIEV 445
           + G SW+++
Sbjct: 650 EQGFSWVQI 658



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 160/349 (45%), Gaps = 42/349 (12%)

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           L + F  + ++  +AK   +  A  +FDEIP  +SV    ++ GY    L+   +     
Sbjct: 76  LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYG 235
           M + G+    FT + +L +CA   A + G++VH+++++    LG    V + +SL+ MY 
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVK----LGQSGVVPVANSLLNMYA 191

Query: 236 KCG----------------------LVTKALQV--FNLAGHRLEGEINKDVVLWTSMLGV 271
           KCG                      +++  +Q   F+LA    +   + D+V W S++  
Sbjct: 192 KCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITG 251

Query: 272 YGRNGYFKEVIKLYEAMLMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
           Y   GY    ++ +  ML + + KPD+    +V+SAC++   +KLG +    +V    ++
Sbjct: 252 YCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVR-ADVD 310

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
                 + L+ +  ++G ++ A +++      G  S +V  + +LL      G F++G +
Sbjct: 311 IAGAVGNALISMYAKSGAVEVAHRIVEIT---GTPSLNVIAFTSLLD-----GYFKIGDI 362

Query: 391 AAQKAL--ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
              +A+   L   +V  +  +   YA+  +  +   L  LM  +G K +
Sbjct: 363 DPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPN 411



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 8/226 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R+ + +  +I  + +NG    AL  F  M   G   + Y L + L+  +S+     G
Sbjct: 372 LKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHG 431

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI-PVKNSVCANALLSGYCE 164
           KQ+ A   +   +SSV VG+ALI +Y++   I DA  +F+ I   ++++   +++    +
Sbjct: 432 KQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQ 491

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             L    +EL   M  + L  DH T   +L AC  +   E G+  +  +++   N+    
Sbjct: 492 HGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKS-YFNLMKNVHNIEPTS 550

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
              + +I++ G+ GL+ +A              I  DVV W S+L 
Sbjct: 551 SHYACMIDLLGRAGLLEEAYNFIR------NMPIEPDVVAWGSLLS 590


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 136/409 (33%), Positives = 226/409 (55%), Gaps = 23/409 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSF---MHVHGIFLDTYALCSSLTASTSVKDA-RF 104
           RN   +NV+I+ +  +G+  +  +T+ F   M +  +  D Y + S L      K    +
Sbjct: 188 RNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDY 247

Query: 105 GKQVQAHVTKS----GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           G+++  ++ K+    G  S V +G  LID+Y++   +     +FD +  +N     A+++
Sbjct: 248 GRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMIN 307

Query: 161 GYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           GY E       L L R M  + G++ +  +L ++L AC+  S    GRQ+H + +RK   
Sbjct: 308 GYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRK--E 365

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L N+V + ++LI+MY KCG +  A +VF       +  + KD + W+SM+  YG +G  +
Sbjct: 366 LNNEVSLCNALIDMYSKCGSLDSARRVFE------DDSLCKDAISWSSMISGYGLHGKGQ 419

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E I LY+ ML  G +PD +  V ++SACS +G V  G+  +  +++DY +EP  E ++C+
Sbjct: 420 EAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACI 479

Query: 340 VDLLCRAGELDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           VD+L RAG+LD A   I  M ++ G      S+WGAL+S     G  E+ +LA +  ++L
Sbjct: 480 VDMLGRAGQLDPALDFIKAMPVEPGP-----SVWGALVSCSIIHGDLEMQELAYRFLIQL 534

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +P N   YV +SNLYA    WD + ++R +MK+K L+K  GCSWI +  
Sbjct: 535 EPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINN 583



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 169/349 (48%), Gaps = 20/349 (5%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           +  ++L+  Y  C+H  +   + + L+    +N   +N +I+ + +N     A + F+ M
Sbjct: 59  LLATKLIFAYAICQHPYHSRLVFDSLQH---KNVFLWNSLINGYAKNRLYNEAFQLFNQM 115

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARF-GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
               +  D + L S+L+  +S   A F GK +     + G++S   V ++++ +Y K   
Sbjct: 116 CSSDVLPDDFTL-STLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGN 174

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYC---EAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
             ++  +FDE+ ++NS   N L++GY             E V+ M    +  D +T+S+L
Sbjct: 175 FEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSL 234

Query: 194 LRACAGLSAA-EFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           L  C G     ++GR++H Y+++    LG  +DV +   LI+MY +   V    +VF+  
Sbjct: 235 LPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRM 294

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM-LMNGTKPDEVAFVTVISACSH 309
             R       +V  WT+M+  Y  NG   E + L+  M +++G +P+ V+ V+V+ ACS 
Sbjct: 295 KCR-------NVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSS 347

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
              +  G +   + V   +L       + L+D+  + G LD A ++  +
Sbjct: 348 FSGLLSGRQIHGFAVRK-ELNNEVSLCNALIDMYSKCGSLDSARRVFED 395



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 135/303 (44%), Gaps = 21/303 (6%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           F  + AL  SL  S + K  +  +Q  + +   G   +  + + LI  YA     + + L
Sbjct: 20  FDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRL 79

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD +  KN    N+L++GY + +L+    +L   M +  +  D FTLS L +  + L A
Sbjct: 80  VFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGA 139

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G+ +H   IR      +D  + +S++ MY KCG   ++ +VF+    R  G      
Sbjct: 140 LFSGKSIHGKSIR--IGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGS----- 192

Query: 263 VLWTSMLGVYGRNG---YFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-HTGQVKLGIE 318
             W  ++  Y  +G   + +E  +  + M M+  +PD     +++  C    G+   G E
Sbjct: 193 --WNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRE 250

Query: 319 YFEWMVHD---YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
              ++V +     L+       CL+D+  R+ ++    ++ + M  R     +V  W A+
Sbjct: 251 LHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCR-----NVFSWTAM 305

Query: 376 LSA 378
           ++ 
Sbjct: 306 ING 308


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 129/399 (32%), Positives = 218/399 (54%), Gaps = 15/399 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RN + +N +I++  +NG+   A +  + M   G   ++  L + L A   +   + G
Sbjct: 203 MKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMG 262

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ A   + G +  +F+ +ALID+Y+K   +  A  +F E   K+ V  N L+ GY ++
Sbjct: 263 KQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSYNTLILGYSQS 321

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L L + M ++G+DYD  +    L AC  LS  + G+++H  ++R+   L    F
Sbjct: 322 PWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRL--LSGHPF 379

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +SL+++Y K G++  A ++FN           KDV  W +M+  YG +G      +L+
Sbjct: 380 LSNSLLDLYTKGGMLVTASKIFNKI-------TKKDVASWNTMILGYGMHGQIDIAFELF 432

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M  +G   D V+++ V++ACSH G V  G +YF  MV    +EP   HY+C+VDLL R
Sbjct: 433 ELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGR 491

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG+L K  ++I +M       ++  +WGALL AC   G  EL + AA+   EL P + G 
Sbjct: 492 AGQLSKCAEIIRDM----PFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGY 547

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           Y ++ N+YA+   W+E  ++R+LMK + ++K+   SW++
Sbjct: 548 YTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 586



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 137/277 (49%), Gaps = 9/277 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++S F  NG    A +    M   G  L+  +L S + A  + ++ +FG  +
Sbjct: 4   RDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSI 63

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K G  + V + +AL+D+Y K   +  +  +FD +  +N V  N+ +  +  A  +
Sbjct: 64  HALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFY 123

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L + R M    +     TLS+LL A   L + + GR+VH Y I++  +L  D+F+ +
Sbjct: 124 GDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDL--DIFVAN 181

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++MY K G + KA  +F       E   +++VV W +M+    +NG   E  +L   M
Sbjct: 182 SLVDMYAKFGSLEKASTIF-------EQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDM 234

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
             +G  P+ +  V V+ AC+    +K+G +   W + 
Sbjct: 235 QKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIR 271



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 166/351 (47%), Gaps = 12/351 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +N  I  F   G     L+ F  M  H +   +  L S L A   +     G++V
Sbjct: 105 QNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREV 164

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +  K      +FV ++L+D+YAK   +  A  +F+++  +N V  NA+++   +    
Sbjct: 165 HGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAE 224

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                LV  M   G   +  TL  +L ACA +++ + G+Q+HA+ IR+   L  D+F+ +
Sbjct: 225 TEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRR--GLMFDLFISN 282

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG ++ A  +F  +         KD V + +++  Y ++ +  E + L++ M
Sbjct: 283 ALIDMYSKCGQLSLARNIFERS--------EKDDVSYNTLILGYSQSPWCFESLLLFKQM 334

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G   D V+F+  +SAC++    K G E    +V    L   P   + L+DL  + G 
Sbjct: 335 RSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRL-LSGHPFLSNSLLDLYTKGGM 393

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           L  A K+ N++  +   S +  + G  +    D   FEL +L     L+ D
Sbjct: 394 LVTASKIFNKITKKDVASWNTMILGYGMHGQIDIA-FELFELMKGDGLDYD 443



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 112/235 (47%), Gaps = 23/235 (9%)

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +P ++ V  N+L+S +    ++      +  M   G   +  +L +++ AC      +FG
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
             +HA  ++    L   V + ++L++MYGK G V  ++QVF       +G + ++ V W 
Sbjct: 61  LSIHALAVK--VGLNTMVNLANALVDMYGKFGDVEASMQVF-------DGMLEQNEVSWN 111

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           S +G +   G++ +V++++  M  +   P  +   +++ A    G   LG E     VH 
Sbjct: 112 SAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGRE-----VHG 166

Query: 327 YKLEPGPE----HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           Y ++   +      + LVD+  + G L+KA  +  +M DR     +V  W A+++
Sbjct: 167 YSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDR-----NVVSWNAMIA 216


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 218/394 (55%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +++ + +NG  +  ++ F  M   G+  D   L S +TA   + DA+ GK V  HV 
Sbjct: 189 WNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVD 248

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           + G   +  + +AL+D+YAK   I  A  +FD +  ++ V  +A++SGY +A      L 
Sbjct: 249 EEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALG 308

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M    ++ +  T+ ++L ACA L A E G+ VH+Y+ RK   L     + ++L++ 
Sbjct: 309 LFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRK--RLSLTTILGTALVDF 366

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A++ F       E    K+   WT+++     NG  +E ++L+ +M   G 
Sbjct: 367 YAKCGCIDDAVEAF-------ESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGI 419

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +P +V F+ V+ ACSH+  V+ G  +F+ M  DY ++P  EHY C+VDLL RAG +D+A+
Sbjct: 420 EPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAY 479

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           + I  M        +  +W ALLS+C       +G+ A ++ + L+P + G YV+LSN+Y
Sbjct: 480 QFIRTM----PIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIY 535

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A    W +   +R+ MK++G++K  GCS IE+ G
Sbjct: 536 ASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDG 569



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 178/369 (48%), Gaps = 30/369 (8%)

Query: 46  LNPRNPLP---FNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYALCSSLTASTSVK 100
           L PR PL    +NV++  F   G P  AL  F  M         D +    +L + + + 
Sbjct: 75  LGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMC 134

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
               G+ VQA+  K G ++  FV S+LI +YA    +  A L+FD       V  NA+++
Sbjct: 135 ALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVA 194

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            Y +   W   +E+ + M  +G+ +D  TL +++ AC  +  A+ G+ V  ++  +   L
Sbjct: 195 AYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEE--GL 252

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             +  + ++L++MY KCG + KA ++F+       G  ++DVV W++M+  Y +    +E
Sbjct: 253 ARNPKLVTALMDMYAKCGEIGKARRLFD-------GMQSRDVVAWSAMISGYTQADQCRE 305

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY----KLEPGPEHY 336
            + L+  M +   +P++V  V+V+SAC+  G ++ G    +W VH Y    +L       
Sbjct: 306 ALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETG----KW-VHSYVRRKRLSLTTILG 360

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQK 394
           + LVD   + G +D A +    M  +   +     W AL+   A +  G+  L   ++ +
Sbjct: 361 TALVDFYAKCGCIDDAVEAFESMPVKNSWT-----WTALIKGMATNGRGREALELFSSMR 415

Query: 395 ALELDPHNV 403
              ++P +V
Sbjct: 416 EAGIEPTDV 424



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 120/285 (42%), Gaps = 15/285 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           V  H  E GL     ++  + LM  Y  C     +G        +  R+ + ++ +IS +
Sbjct: 243 VAGHVDEEGLARNPKLV--TALMDMYAKC---GEIGKARRLFDGMQSRDVVAWSAMISGY 297

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +      AL  FS M +  +  +   + S L+A   +     GK V ++V +     + 
Sbjct: 298 TQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTT 357

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            +G+AL+D YAK   I DA   F+ +PVKNS    AL+ G          LEL   M   
Sbjct: 358 ILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREA 417

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G++    T   +L AC+     E GR+    M R    +   V     ++++ G+ GLV 
Sbjct: 418 GIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARD-YGIKPRVEHYGCMVDLLGRAGLVD 476

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSML---GVYGRNGYFKEVIK 283
           +A Q            I  + V+W ++L    V+   G  +E +K
Sbjct: 477 EAYQFIRTM------PIEPNAVIWRALLSSCAVHRNVGIGEEALK 515


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 136/445 (30%), Positives = 233/445 (52%), Gaps = 18/445 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           ++H +    G      +   + L+  Y+ C    ++GT       +  +  + +N +I  
Sbjct: 297 SIHGYSMRAGFE--SFVNVSTALVDMYSKC---GSVGTARLIFDRMTGKTVVSWNSMIDG 351

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +NG P  A++ F  M    + +    +  +L A   + D   G+ V   + +    S 
Sbjct: 352 YVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSD 411

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           V V ++LI +Y+K   +  A  +F+ +  K  V  NA++ GY +       ++    M  
Sbjct: 412 VSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQL 471

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             +  D FT+ +++ A A LS     + +H  +IR C  L  +VF+ ++L++MY KCG V
Sbjct: 472 QNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTC--LDKNVFVATALVDMYAKCGAV 529

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A ++F++   R        V  W +M+  YG +G  K  ++L+E M     KP+EV F
Sbjct: 530 HTARKLFDMMDER-------HVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTF 582

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + V+SACSH+G V+ G +YF  M  DY LEP  +HY  +VDLL RA  L++AW  I +M 
Sbjct: 583 LCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKM- 641

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
                  ++S++GA+L AC      ELG+ AA +  +LDP + G +V+L+N+YA   MWD
Sbjct: 642 ---PIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWD 698

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
           ++ ++R  M++KG++K  G S +E+
Sbjct: 699 KVARVRTTMEKKGIQKTPGWSVVEL 723



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 169/364 (46%), Gaps = 17/364 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS + +NG    AL+    M   G   D+  + S L A   V   R G+ +
Sbjct: 239 RDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSI 298

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +  ++G+ S V V +AL+D+Y+K   +  A L+FD +  K  V  N+++ GY +    
Sbjct: 299 HGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDP 358

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +E+ + M    ++  + T+   L ACA L   E GR VH  + +    LG+DV + +
Sbjct: 359 GAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQ--LELGSDVSVMN 416

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI MY KC  V  A ++F    H       K +V W +M+  Y +NG   E I  +  M
Sbjct: 417 SLISMYSKCKRVDIAAEIFENLQH-------KTLVSWNAMILGYAQNGRINEAIDYFCKM 469

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            +   KPD    V+VI A +    +    ++   +V    L+      + LVD+  + G 
Sbjct: 470 QLQNIKPDSFTMVSVIPALAELSVLPQA-KWIHGLVIRTCLDKNVFVATALVDMYAKCGA 528

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIY 406
           +  A KL  +M+D  H    V+ W A++     H  GK  L      K   + P+ V   
Sbjct: 529 VHTARKLF-DMMDERH----VTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFL 583

Query: 407 VMLS 410
            +LS
Sbjct: 584 CVLS 587



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 131/263 (49%), Gaps = 9/263 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           ++ ++  + RN S   A+  F  M   G+    Y     L       D R GK++   + 
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI 202

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            +G+ S+VF  + ++++YAK  L+ +A  MFD +P ++ VC N ++SGY +       LE
Sbjct: 203 VNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALE 262

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           LV  M   G   D  T+ ++L A A + +   GR +H Y +R      + V + ++L++M
Sbjct: 263 LVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMR--AGFESFVNVSTALVDM 320

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V  A  +F+    R+ G   K VV W SM+  Y +NG     +++++ M+    
Sbjct: 321 YSKCGSVGTARLIFD----RMTG---KTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQV 373

Query: 294 KPDEVAFVTVISACSHTGQVKLG 316
           +   V  +  + AC+  G V+ G
Sbjct: 374 EMTNVTVMGALHACADLGDVEQG 396



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 154/360 (42%), Gaps = 53/360 (14%)

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           + K+G  S     + L+ L+ K   +H+A  +F  I  K     + +L GY         
Sbjct: 100 IIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDA 159

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           +     M   G+    +  + LL+ C   +    G+++H  +I       ++VF  + ++
Sbjct: 160 VSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI--VNGFASNVFAMTGVV 217

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
            MY KC LV +A ++F+    R       D+V W +++  Y +NG+ K  ++L   M   
Sbjct: 218 NMYAKCRLVEEAYKMFDRMPER-------DLVCWNTIISGYAQNGFGKTALELVLRMQEE 270

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAG 347
           G +PD +  V+++ A +  G +++G       +H Y +  G E +    + LVD+  + G
Sbjct: 271 GKRPDSITIVSILPAVADVGSLRIGRS-----IHGYSMRAGFESFVNVSTALVDMYSKCG 325

Query: 348 ELDKA--------------W-----------------KLINEMLDRGHGSSSVSMWGALL 376
            +  A              W                 ++  +M+D     ++V++ GA L
Sbjct: 326 SVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGA-L 384

Query: 377 SACHDCGKFELGKLAAQ--KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
            AC D G  E G+   +    LEL   +V +   L ++Y+K    D   ++ E ++ K L
Sbjct: 385 HACADLGDVEQGRFVHKLLDQLELGS-DVSVMNSLISMYSKCKRVDIAAEIFENLQHKTL 443


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 143/460 (31%), Positives = 239/460 (51%), Gaps = 47/460 (10%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78
            Q+ L+  Y +CR   +   L +  K  +P + + +N++I  +C+NG    AL+ F  M 
Sbjct: 158 IQTGLIAMYASCRRIMDARLLFD--KMCHP-DAVAWNMIIDGYCQNGHYDDALRLFEDMR 214

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW--------------------- 117
              +  D+  LC+ L+A     +  +G+ +   V  +G+                     
Sbjct: 215 SSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMD 274

Query: 118 --------LSS--VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
                   LSS  + V +A++  YAKL ++ DA  +FD++  ++ VC +A++SGY E+  
Sbjct: 275 LARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQ 334

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               L+L   M       D  T+ +++ AC+ + A      +H Y+ R     G  + + 
Sbjct: 335 PQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRS--GFGRALSVN 392

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+MY KCG + KA +VF       E    K+V+ W+SM+  +  +G     IKL+  
Sbjct: 393 NALIDMYAKCGNLVKAREVF-------ENMPRKNVISWSSMINAFAMHGNADSAIKLFRR 445

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M     +P+ V F+ V+ AC H G V+ G + F  M++++ + P  EHY C+VDL CRA 
Sbjct: 446 MKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRAN 505

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L KA +LI  M      + +V +WG+L+SAC   G+ ELG+ AA++ LEL+P + G  V
Sbjct: 506 FLRKAIELIETMP----FAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALV 561

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+YAK   W+++G +R+ M  KG+ K+   S IE+  
Sbjct: 562 VLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINN 601



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 161/355 (45%), Gaps = 42/355 (11%)

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
           ++   LD ++  S L A + V     G ++    +K G++   F+ + LI +YA    I 
Sbjct: 114 INAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIM 173

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           DA L+FD++   ++V  N ++ GYC+   +   L L   M +  +  D   L  +L AC 
Sbjct: 174 DARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACG 233

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN---------- 248
                 +GR +H ++  K      D  +Q++LI MY  CG +  A ++++          
Sbjct: 234 HAGNLSYGRTIHEFV--KDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVS 291

Query: 249 ---LAGHR-----------LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
              L+G+             +  I +D+V W++M+  Y  +   +E +KL++ ML   + 
Sbjct: 292 TAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSV 351

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELD 350
           PD++  ++VISACSH G     +    W +H Y    G        + L+D+  + G L 
Sbjct: 352 PDQITMLSVISACSHVG----ALAQANW-IHTYVDRSGFGRALSVNNALIDMYAKCGNLV 406

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNV 403
           KA ++   M  +     +V  W ++++  A H      +      K + ++P+ V
Sbjct: 407 KAREVFENMPRK-----NVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGV 456


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 141/458 (30%), Positives = 227/458 (49%), Gaps = 53/458 (11%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLK-FLNPRNP--LPFNVVISDFCRNGSPLYALKTFSFM 77
           S L++ Y  C      G +++ ++ F    NP  + +N +IS +  N   + A    + M
Sbjct: 243 SALIMGYANC------GRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEM 296

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
             + + +D+  +   L+A +S  +A++ KQ+  +V K G + SV V SA ID Y+K    
Sbjct: 297 KNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNP 356

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA----------------- 180
           +DA  +F E+   ++V  N++++ YC          +   MP+                 
Sbjct: 357 NDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNA 416

Query: 181 --------------LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                         L L  D F+L++++ ACA +S+ E G QV A  I     L +D  +
Sbjct: 417 YPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVFARAI--ITGLESDQAV 474

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +SL++ Y KCG +    ++F       +  I  D V W SML  Y  NGY  E + L+ 
Sbjct: 475 STSLVDFYCKCGFIENGRKLF-------DSMIKTDEVSWNSMLMGYATNGYGLETLTLFN 527

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M   G +P ++ F  V+SAC H G V+ G ++F  M +DY ++PG EHYSC+VDL  RA
Sbjct: 528 EMKQAGLRPTDITFTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARA 587

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G L +A  L+  M       +  SMW ++L  C   G  +LGK  AQ+ ++L+P +   Y
Sbjct: 588 GCLKEALNLVEHM----PFEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQLNPESSSAY 643

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           V LS ++A    W+    +R++M EK +KK  G SW +
Sbjct: 644 VQLSGIFATSGDWESSALVRKIMTEKQVKKHPGFSWAD 681



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 156/412 (37%), Gaps = 90/412 (21%)

Query: 12  LLICLIIFQSRLMLPYTTCRHKKNLGTLT---NCLKFLNPRNPLPFNVVISDFCRNGSPL 68
           L+   +   +RL+  Y  C      GT+T   N    +  RN   +N +I  + R G   
Sbjct: 36  LINATVSLANRLLQMYARCG-----GTMTDAHNLFDEMPERNCFSWNTMIEGYMRVGDKE 90

Query: 69  YALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
            +LK F  M     +                                 W       + +I
Sbjct: 91  RSLKLFDLMPQKNDY--------------------------------SW-------NVVI 111

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--- 185
             +AK   +  A+ +F+E+P +N V  N+++ GY         + L + + +  L+    
Sbjct: 112 SGFAKAGELDVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCG 171

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           D F L++++ ACA L A E+G+QVHA ++     L  D  + SSLI +Y KCG +  A  
Sbjct: 172 DTFVLASVIGACADLGAIEYGKQVHARILMDDVEL--DSVLISSLINLYAKCGHLDTANY 229

Query: 246 VFNLAGH-----------------RLEGEI-------NKDVVLWTSMLGVYGRNGYFKEV 281
           V  +                    R+   +       N   V+W S++  Y  N    + 
Sbjct: 230 VLKMMDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKA 289

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----S 337
             L   M  N  + D      ++SACS TG  +     +   +H Y  + G        S
Sbjct: 290 FALVNEMKNNRVQVDSSTITVILSACSSTGNAQ-----YAKQMHGYVCKVGLIDSVIVAS 344

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
             +D   +    + A KL +E+      +    +  ++++A  +CG+    K
Sbjct: 345 AFIDAYSKCRNPNDACKLFSEL-----KAYDTVLLNSMITAYCNCGRIRDAK 391



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 116/281 (41%), Gaps = 60/281 (21%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLL-LIHDAELMFDE 146
           L  SL   +S+     GKQ+     K G + ++V + + L+ +YA+    + DA  +FDE
Sbjct: 11  LLQSLNTHSSIHQ---GKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFDE 67

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +P +N    N ++ GY         L+L  LMP                           
Sbjct: 68  MPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQ-------------------------- 101

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
                          ND +  + +I  + K G +  A ++FN    R       + V W 
Sbjct: 102 --------------KND-YSWNVVISGFAKAGELDVAKKLFNEMPRR-------NGVAWN 139

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKP---DEVAFVTVISACSHTGQVKLGIEYFEWM 323
           SM+  Y RNG+ +E + L++ +  N  +    D     +VI AC+  G ++ G +    +
Sbjct: 140 SMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAIEYGKQVHARI 199

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKA---WKLINEMLD 361
           + D  +E      S L++L  + G LD A    K+++E+ D
Sbjct: 200 LMD-DVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDD 239


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 196/345 (56%), Gaps = 23/345 (6%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL----- 159
           GK +   V K G      V ++LI++Y KL  +  A  +F+E+PV++ V  N+++     
Sbjct: 240 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 299

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           +GY E      G++L  LM   G++ D  T+ ALLRAC           +HAY+ R  C 
Sbjct: 300 NGYAEK-----GMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR--CG 352

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
              D+ + ++L+ +Y K G +  +  +F       E   ++D + WT+ML  Y  +   +
Sbjct: 353 FNADIIIATALLNLYAKLGRLNASEDIF-------EEIKDRDRIAWTAMLAGYAVHACGR 405

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E IKL++ M+  G + D V F  ++SACSH+G V+ G +YFE M   Y++EP  +HYSC+
Sbjct: 406 EAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCM 465

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL R+G L+ A++LI  M        S  +WGALL AC   G  ELGK  A++ L LD
Sbjct: 466 VDLLGRSGRLEDAYELIKSM----PMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 521

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           P +   Y+MLSN+Y+   +W +  ++R LMKE+ L ++ GCS+IE
Sbjct: 522 PSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIE 566



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 172/378 (45%), Gaps = 43/378 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI---------------------FLDTY 87
           R  +P+N ++S   R G+ +   ++F+F H   I                     F+  Y
Sbjct: 61  RLAVPWNSIVSPV-RCGTSISHNRSFAFRHTDLIPKQFKRFNTNKGCCIFREASQFIVVY 119

Query: 88  ALCSSLT-ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           ++  SL  A +S     +   + A V KS   S  F+G  L+ +Y KL    DA+ +FDE
Sbjct: 120 SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 179

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
           +P K+ V  N+L+SG          L    R+    G   +  TL +++ ACA + A + 
Sbjct: 180 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 239

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G+ +H  +++    +     + +SLI MYGK G +  A Q+F       E    + +V W
Sbjct: 240 GKSLHGVVVK--LGMSGKAKVVNSLINMYGKLGFLDAASQLF-------EEMPVRSLVSW 290

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            SM+ ++  NGY ++ + L+  M   G  PD+   V ++ AC+ TG  +   E     +H
Sbjct: 291 NSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA-ESIHAYIH 349

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCG 383
                      + L++L  + G L+ +  +  E+ DR   +     W A+L+  A H CG
Sbjct: 350 RCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIA-----WTAMLAGYAVHACG 404

Query: 384 K--FELGKLAAQKALELD 399
           +   +L  L  ++ +E+D
Sbjct: 405 REAIKLFDLMVKEGVEVD 422



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 140/315 (44%), Gaps = 46/315 (14%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++     NG     +  F+ M   GI  D   + + L A T     R  + +
Sbjct: 285 RSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESI 344

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A++ + G+ + + + +AL++LYAKL  ++ +E +F+EI  ++ +   A+L+GY      
Sbjct: 345 HAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACG 404

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              ++L  LM   G++ DH T + LL AC+     E G++    M               
Sbjct: 405 REAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIM--------------- 449

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
              E+Y                  R+E  ++     ++ M+ + GR+G  ++  +L ++M
Sbjct: 450 --SEVY------------------RVEPRLDH----YSCMVDLLGRSGRLEDAYELIKSM 485

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP-EHYSCLVDLLCRAG 347
            M   +P    +  ++ AC   G V+LG E  E ++    L+P    +Y  L ++   AG
Sbjct: 486 PM---EPSSGVWGALLGACRVYGNVELGKEVAEQLL---SLDPSDHRNYIMLSNIYSAAG 539

Query: 348 ELDKAWKLINEMLDR 362
               A K+   M +R
Sbjct: 540 LWRDASKVRALMKER 554


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 129/399 (32%), Positives = 218/399 (54%), Gaps = 15/399 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RN + +N +I++  +NG+   A +  + M   G   ++  L + L A   +   + G
Sbjct: 382 MKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMG 441

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ A   + G +  +F+ +ALID+Y+K   +  A  +F E   K+ V  N L+ GY ++
Sbjct: 442 KQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSYNTLILGYSQS 500

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L L + M ++G+DYD  +    L AC  LS  + G+++H  ++R+   L    F
Sbjct: 501 PWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRL--LSGHPF 558

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +SL+++Y K G++  A ++FN           KDV  W +M+  YG +G      +L+
Sbjct: 559 LSNSLLDLYTKGGMLVTASKIFNKI-------TKKDVASWNTMILGYGMHGQIDIAFELF 611

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M  +G   D V+++ V++ACSH G V  G +YF  MV    +EP   HY+C+VDLL R
Sbjct: 612 ELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQMHYACMVDLLGR 670

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG+L K  ++I +M       ++  +WGALL AC   G  EL + AA+   EL P + G 
Sbjct: 671 AGQLSKCAEIIRDM----PFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGY 726

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           Y ++ N+YA+   W+E  ++R+LMK + ++K+   SW++
Sbjct: 727 YTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 765



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 137/277 (49%), Gaps = 9/277 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++S F  NG    A +    M   G  L+  +L S + A  + ++ +FG  +
Sbjct: 183 RDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSI 242

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   K G  + V + +AL+D+Y K   +  +  +FD +  +N V  N+ +  +  A  +
Sbjct: 243 HALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFY 302

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L + R M    +     TLS+LL A   L + + GR+VH Y I++  +L  D+F+ +
Sbjct: 303 GDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDL--DIFVAN 360

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++MY K G + KA  +F       E   +++VV W +M+    +NG   E  +L   M
Sbjct: 361 SLVDMYAKFGSLEKASTIF-------EQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDM 413

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
             +G  P+ +  V V+ AC+    +K+G +   W + 
Sbjct: 414 QKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIR 450



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 166/351 (47%), Gaps = 12/351 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +N  I  F   G     L+ F  M  H +   +  L S L A   +     G++V
Sbjct: 284 QNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREV 343

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +  K      +FV ++L+D+YAK   +  A  +F+++  +N V  NA+++   +    
Sbjct: 344 HGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAE 403

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                LV  M   G   +  TL  +L ACA +++ + G+Q+HA+ IR+   L  D+F+ +
Sbjct: 404 TEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRR--GLMFDLFISN 461

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG ++ A  +F  +         KD V + +++  Y ++ +  E + L++ M
Sbjct: 462 ALIDMYSKCGQLSLARNIFERS--------EKDDVSYNTLILGYSQSPWCFESLLLFKQM 513

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G   D V+F+  +SAC++    K G E    +V    L   P   + L+DL  + G 
Sbjct: 514 RSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRL-LSGHPFLSNSLLDLYTKGGM 572

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           L  A K+ N++  +   S +  + G  +    D   FEL +L     L+ D
Sbjct: 573 LVTASKIFNKITKKDVASWNTMILGYGMHGQIDIA-FELFELMKGDGLDYD 622



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 147/317 (46%), Gaps = 25/317 (7%)

Query: 67  PLYALKTFSFMHVHGIFLD--TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG 124
           P  AL+ ++ M    +  D  T+       A+        G ++ A   + G L+ VF G
Sbjct: 98  PSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVFTG 157

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           + L+  YA      DA  +FDE+P ++ V  N+L+S +    ++      +  M   G  
Sbjct: 158 NTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFP 217

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            +  +L +++ AC      +FG  +HA  ++    L   V + ++L++MYGK G V  ++
Sbjct: 218 LNVASLVSVVPACGTEQEEKFGLSIHALAVK--VGLNTMVNLANALVDMYGKFGDVEASM 275

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           QVF       +G + ++ V W S +G +   G++ +V++++  M  +   P  +   +++
Sbjct: 276 QVF-------DGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLL 328

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPE----HYSCLVDLLCRAGELDKAWKLINEML 360
            A    G   LG E     VH Y ++   +      + LVD+  + G L+KA  +  +M 
Sbjct: 329 PALVELGSFDLGRE-----VHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMK 383

Query: 361 DRGHGSSSVSMWGALLS 377
           DR     +V  W A+++
Sbjct: 384 DR-----NVVSWNAMIA 395


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 142/433 (32%), Positives = 227/433 (52%), Gaps = 48/433 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG--IFLDTYALCSSLTASTSVKDARFGK 106
           R+ + +N +I  + R+G P  AL+ F  +   G  +  D   +  +++    + D   GK
Sbjct: 185 RDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGK 244

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLY-------------------------------AKLL 135
           ++   V   G   +V + +A++D+Y                               A+L 
Sbjct: 245 RLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLG 304

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
           ++ DA ++FDE+P ++    NAL++GY + K     + L   M    +D +  T+  LL 
Sbjct: 305 MMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLS 364

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC+ L A E G  VH Y+ R    L   V + +SL++MY KCG + KA+ +F        
Sbjct: 365 ACSQLGALEMGMWVHHYIDRHQLYLS--VALGTSLVDMYAKCGNIKKAICIFK------- 415

Query: 256 GEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
            EI +K+ + WT+M+     +G+  E I+ ++ M+  G +PDE+ F+ V+SAC H G VK
Sbjct: 416 -EIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVK 474

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G ++F  M   Y LE   +HYSC++DLL RAG LD+A +L+N M           +WGA
Sbjct: 475 EGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTM----PMDPDAVVWGA 530

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           L  AC   G   LG+ AA K +ELDP + GIYV+L+N+YA+  M  +  ++R +M+  G+
Sbjct: 531 LFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGV 590

Query: 435 KKDVGCSWIEVTG 447
           +K  GCS IE+ G
Sbjct: 591 EKVPGCSCIELNG 603



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 137/296 (46%), Gaps = 29/296 (9%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L A   ++   +G  V  HV K G+ + VFV +A +  ++    +  A  +FDE P ++ 
Sbjct: 128 LKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLFDESPARDV 187

Query: 153 VCANALLSGYCEAKLWAGGLELV-RLMP-ALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           V  N L+ GY  + L    LEL  RL+     +  D  T+   +  CA +   E G+++H
Sbjct: 188 VSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLH 247

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGE 257
            ++  K   +   V + +++++MY KCG +  A  VF              + GH   G 
Sbjct: 248 EFVDSK--GVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGM 305

Query: 258 I-----------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           +            +DV  W +++  Y +N   KE I L+  M  +   P+E+  V ++SA
Sbjct: 306 MEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSA 365

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           CS  G +++G+ +    +  ++L       + LVD+  + G + KA  +  E+ D+
Sbjct: 366 CSQLGALEMGM-WVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDK 420



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 17/216 (7%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           DH T   LL+ACA L    +G  V  ++ +       DVF+ ++ +  +   G +  A +
Sbjct: 120 DHLTFPFLLKACARLQYRPYGAAVLGHVQK--LGFSADVFVVNAGVHFWSVSGSMVLARR 177

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKPDEVAFVTV 303
           +F+ +  R       DVV W +++G Y R+G  +E ++L+  ++ +G   +PDEV  +  
Sbjct: 178 LFDESPAR-------DVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGA 230

Query: 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
           +S C+  G ++LG    E+ V    +       + ++D+  + G L+ A K + E +D  
Sbjct: 231 VSGCAQMGDLELGKRLHEF-VDSKGVRCTVRLMNAVMDMYVKCGSLELA-KSVFERID-- 286

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
             + +V  W  ++      G  E  ++   +  E D
Sbjct: 287 --NKTVVSWTTMIVGHARLGMMEDARMLFDEMPERD 320


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 138/442 (31%), Positives = 230/442 (52%), Gaps = 18/442 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHAH  +  L     +  ++ L+  Y  C H   L       + L   + + +N +I  
Sbjct: 360 QVHAHVIKADLESDEYV--KNALIDMYAKCEH---LTEARAVFEALAEDDAISYNAMIEG 414

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + R G    A++ F  M    +        S L  S+S  D    KQ+   + KSG    
Sbjct: 415 YARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLD 474

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           ++ GSALID+Y+K  L+ DA+L+F  +  ++ V  NA++ G  + +     ++L   +  
Sbjct: 475 LYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRV 534

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            GL  + FT  AL+   + L++   G+Q HA +I+   +  +D  + ++LI+MY KCG +
Sbjct: 535 SGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGAD--SDPHISNALIDMYAKCGFI 592

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +   +F       E  + KDV+ W SM+  Y ++G+ +E + ++  M   G +P+ V F
Sbjct: 593 EEGRLLF-------ESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTF 645

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V+V+SAC+H G V  G+ +F  M   Y +EPG EHY+ +V+L  R+G+L  A     E +
Sbjct: 646 VSVLSACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAA----KEFI 701

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
           +R       ++W +LLSACH  G  E+G+ A + AL  DP + G  V++SN+YA   +W 
Sbjct: 702 ERMPIEPVATIWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASKGLWA 761

Query: 421 EIGQLRELMKEKGLKKDVGCSW 442
           +  +LR+ M   G+ K+ G SW
Sbjct: 762 DAQKLRQGMDCAGVVKEPGYSW 783



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 212/474 (44%), Gaps = 60/474 (12%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVI 58
            HA    +GLL     +F + L+L     R    LG L +  +  +    RN + +   I
Sbjct: 52  AHARAVVSGLLPD---LFLANLLL-----RGYSKLGRLGDARRLFDSMPSRNLVSWGSAI 103

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIF------LDTYALCSSLTASTSVKDARFGKQVQAHV 112
           S + ++G    AL  F+     G         + + L S+L A    + ARFG+QV    
Sbjct: 104 SMYAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVA 163

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
            K G  ++VFVG+AL++LYAK   I  A  +FD +P +N V   A+++GY +A      L
Sbjct: 164 AKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVAL 223

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           EL   M   G+  D F L++   AC+GL   E GRQ+H Y  R      +D  + ++LI+
Sbjct: 224 ELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAE--SDASVVNALID 281

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           +Y KC  +  A ++F+     +E   N+++V WT+M+  Y +N    E + ++  +   G
Sbjct: 282 LYCKCSRLLLARRLFD----SME---NRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAG 334

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            +PD  A  +++++C     +  G +    ++    LE      + L+D+  +   L +A
Sbjct: 335 WQPDVFACTSILNSCGSLAAIWQGRQVHAHVIK-ADLESDEYVKNALIDMYAKCEHLTEA 393

Query: 353 WKLINEMLDRGHGSSSVSM------WGALLSACHDCGKFE--------------LGKLAA 392
            + + E L      S  +M       G L  A    GK                LG  ++
Sbjct: 394 -RAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSS 452

Query: 393 QKALELDPHNVGIYV------------MLSNLYAKFCMWDEIGQLRELMKEKGL 434
           +  LEL     G+ V             L ++Y+KF + D+   +  LM+ + +
Sbjct: 453 RSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDM 506


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 132/400 (33%), Positives = 217/400 (54%), Gaps = 14/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+   +  +I+ + +N  P  AL     M       + +   S L A+ +   +  G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ A   K  W   V+VGSAL+D+YA+   +  A  +FD++  KN V  NAL++G+   
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L +   M   G +  HFT S++  A AG+ A E G+ VHA+MI+    L    F
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLS--AF 178

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +++++MY K G +  A +VF+           KD+V W SML  + + G  +E +  +
Sbjct: 179 VGNTILDMYAKSGSMIDARKVFDHVD-------KKDLVTWNSMLTAFAQYGLGREAVTHF 231

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M   G   +++ F+++++ACSH G VK G +YF+ M+ ++ LEP  +HY  +VDLL R
Sbjct: 232 EEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEHNLEPEIDHYVTVVDLLGR 290

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L+ A   I +M  +     + ++WGALL +C      ++G+ AA    ELDP + G 
Sbjct: 291 AGLLNDALVFIFKMPMK----PTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGP 346

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            V+L N+YA    WD   ++R++MK  G+KK+  CSW+E+
Sbjct: 347 PVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEI 386


>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 611

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 132/393 (33%), Positives = 216/393 (54%), Gaps = 18/393 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFL--DTYALCSSLTASTSVKDARFGKQVQAH 111
           +  VIS   RN     A++ F  MH  G+ L  D +   + L A  ++   R G++V   
Sbjct: 225 WTAVISTLARNDRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGK 284

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V   G   +VFV S+L+D+Y K   +  A ++FD +  KN V   A+L  YC        
Sbjct: 285 VVTLGMKGNVFVESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNGECGSV 344

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L LVR   ++    D ++   ++RAC+GL+A   G +VH   +R+      DV ++S+L+
Sbjct: 345 LGLVREWRSM---VDVYSFGTIIRACSGLAAVRQGNEVHCQYVRR--GGWRDVVVESALV 399

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           ++Y KCG V  A ++F+    R+E    ++++ W +M+G + +NG  +E ++L+E M+  
Sbjct: 400 DLYAKCGSVDFAYRLFS----RMEA---RNLITWNAMIGGFAQNGRGQEGVELFEEMVKE 452

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G +PD ++FV V+ ACSH G V  G  YF+ M  +Y + PG  HY+C++D+L RA  +++
Sbjct: 453 GVRPDWISFVNVLFACSHNGLVDQGRRYFDLMRREYGIRPGVVHYTCMIDILGRAELIEE 512

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
           A      +L+        S W  LL AC  C  +   +  A+K ++L+P     YV+L N
Sbjct: 513 A----ESLLESADCRYDHSRWAVLLGACTKCSDYVTAERIAKKMIQLEPDFHLSYVLLGN 568

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +Y     W+E  ++R+LM+E+G+KK  G SWIE
Sbjct: 569 IYRAVGKWNEALEIRKLMEERGVKKVPGKSWIE 601



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 155/310 (50%), Gaps = 28/310 (9%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL-IHDAEL 142
           L      S L A         G  + AHV KSG+L+  FV ++L+ LY+KL      A  
Sbjct: 51  LKPVVYASLLQACRKAHSFPLGTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARA 110

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD +P K+ +   +++SG+ +       + L   M    ++ + FTLS++L+AC+ L  
Sbjct: 111 LFDALPFKDVIAWTSIISGHVQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLEN 170

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-D 261
              G+ +HA +  +  +  N+V +  +LI+MYG+  +V  A +VF+        E+ + D
Sbjct: 171 LHLGKTLHAVVFIRGFHSNNNV-VACALIDMYGRSRVVDDARKVFD--------ELPEPD 221

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMN--GTKPDEVAFVTVISACSHTGQVKLGIEY 319
            V WT+++    RN  F+E ++++ AM     G + D   F T+++AC + G +++G E 
Sbjct: 222 YVCWTAVISTLARNDRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGRE- 280

Query: 320 FEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
               VH   +  G +      S L+D+  + GE+  A  + + + ++    + V++   L
Sbjct: 281 ----VHGKVVTLGMKGNVFVESSLLDMYGKCGEVGCARVVFDGLEEK----NEVALTAML 332

Query: 376 LSACH--DCG 383
              CH  +CG
Sbjct: 333 GVYCHNGECG 342


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 137/439 (31%), Positives = 219/439 (49%), Gaps = 44/439 (10%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYALCSSLTASTS 98
           N L  +   N + +N +IS    +G    +L  F  M      +  D + L S + +  S
Sbjct: 101 NLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCAS 160

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY--------------------------- 131
           +      +QV       G  S++ +G+ALID Y                           
Sbjct: 161 LGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSM 220

Query: 132 ----AKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
               A+   + DA  +F ++  KN+V   AL++G+ +       L L   M   G+    
Sbjct: 221 VAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSA 280

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCC-NLGNDVFMQSSLIEMYGKCGLVTKALQV 246
           FT +++L ACA L+    G+++H ++IR  C +   ++F+ ++LI+MY KCG +  A  +
Sbjct: 281 FTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTL 340

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           F       +G   KD+V W S++  + +NG+ +E + ++E M+    +P+ V F+ ++SA
Sbjct: 341 F-------KGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSA 393

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
           C HTG V  G+   + M  DY + P  +HY+ ++DLL R   L++A  LI        GS
Sbjct: 394 CCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRA---PKGS 450

Query: 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLR 426
             V MWGALL AC   G  +L + AA+   +L+P N   YVM+ N+YA    WDE  Q+R
Sbjct: 451 DHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDEARQVR 510

Query: 427 ELMKEKGLKKDVGCSWIEV 445
            LM E+GL+K+  CSWIEV
Sbjct: 511 RLMMERGLRKEAACSWIEV 529



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 159/386 (41%), Gaps = 78/386 (20%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S ++   + +  + GK + +H  K+  + + F+ + LID Y+K   I  A  +F  +PVK
Sbjct: 19  SLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLPVK 78

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLD-------------------------- 184
           N+   N ++S Y  + L+     L+  MP   L                           
Sbjct: 79  NTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTML 138

Query: 185 -------YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
                  +D FTL +L+ +CA L A E  RQVH   I     L +++ + ++LI+ YGKC
Sbjct: 139 KQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAI--IIGLNSNIIIGNALIDAYGKC 196

Query: 238 GLVTKALQVFN-----------------LAGHRLEGE-------INKDVVLWTSMLGVYG 273
           G    +  +F+                     RLE           K+ V WT+++  + 
Sbjct: 197 GEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFA 256

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           +NG   E + L+E M   G  P    F +V+SAC+    +  G E     +H + +    
Sbjct: 257 QNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKE-----IHGHIIRSTC 311

Query: 334 EHYSC-------LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
             Y C       L+D+ C+ G++  A  L   M ++      +  W +L++     G  E
Sbjct: 312 IDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEK-----DIVSWNSLITGFAQNGHGE 366

Query: 387 LGKLAAQKALELD--PHNVGIYVMLS 410
                 ++ +E D  P++V    +LS
Sbjct: 367 ESLAVFERMIEADIRPNHVTFLGLLS 392


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 238/444 (53%), Gaps = 19/444 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHA+    GL     I   + L+  Y  C   K++G    C+   + ++ + +  +I+ +
Sbjct: 371 VHAYAIRNGLDSNMQI--GNTLIDMYAKCCCVKHMGYAFECM---HEKDLISWTTIIAGY 425

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +N   L A+  F  + V G+ +D   + S L A + +K   F +++  +V K   L+ +
Sbjct: 426 AQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRD-LADI 484

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            + +A++++Y ++     A   F+ I  K+ V   ++++      L    LEL   +   
Sbjct: 485 MLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQT 544

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            +  D   + + L A A LS+ + G+++H ++IRK   L   +   SSL++MY  CG V 
Sbjct: 545 NIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPI--ASSLVDMYACCGTVE 602

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            + ++F+    R       D++LWTSM+   G +G   E I L++ M      PD + F+
Sbjct: 603 NSRKMFHSVKQR-------DLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFL 655

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            ++ ACSH+G +  G  +FE M + Y+LEP PEHY+C+VDLL R+  L++A++ +  M  
Sbjct: 656 ALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPI 715

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +     S  +W ALL ACH     ELG+LAA++ L+ D  N G Y ++SN++A    W++
Sbjct: 716 K----PSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWND 771

Query: 422 IGQLRELMKEKGLKKDVGCSWIEV 445
           + ++R  MK  GLKK+ GCSWIEV
Sbjct: 772 VEEVRLRMKGNGLKKNPGCSWIEV 795



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 170/337 (50%), Gaps = 18/337 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++S   +N     AL  F  M       D  ++ + + AS    +   GK+V
Sbjct: 312 RDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEV 371

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A+  ++G  S++ +G+ LID+YAK   +      F+ +  K+ +    +++GY + +  
Sbjct: 372 HAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECH 431

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + L R +   G+D D   + ++LRAC+GL +  F R++H Y+ ++  +L  D+ +Q+
Sbjct: 432 LEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKR--DLA-DIMLQN 488

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +++ +YG+ G    A + F       E   +KD+V WTSM+     NG   E ++L+ ++
Sbjct: 489 AIVNVYGEVGHRDYARRAF-------ESIRSKDIVSWTSMITCCVHNGLPVEALELFYSL 541

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                +PD +A ++ +SA ++   +K G E   +++       GP   S LVD+    G 
Sbjct: 542 KQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPI-ASSLVDMYACCGT 600

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCG 383
           ++ + K+ + +  R      + +W ++++A   H CG
Sbjct: 601 VENSRKMFHSVKQR-----DLILWTSMINANGMHGCG 632



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 25/317 (7%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           ++L+  Y  C      G+L + +K  +    R    +N ++  F  +G  L A++ +  M
Sbjct: 83  TKLLHMYEKC------GSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEM 136

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
            V G+ +D     S L A  ++ ++R G ++     K G+   VFV +ALI +Y K   +
Sbjct: 137 RVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDL 196

Query: 138 HDAELMFDEIPV--KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
             A ++FD I +  +++V  N+++S +         L L R M  +G+  + +T  A L+
Sbjct: 197 GGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQ 256

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
                S  + G  +H   ++   N   DV++ ++LI MY KCG +  A +VF        
Sbjct: 257 GVEDPSFVKLGMGIHGAALKS--NHFADVYVANALIAMYAKCGRMEDAERVF-------A 307

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
             + +D V W ++L    +N  +++ +  +  M  +  KPD+V+ + +I+A   +G +  
Sbjct: 308 SMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLN 367

Query: 316 GIEYFEWMVHDYKLEPG 332
           G E     VH Y +  G
Sbjct: 368 GKE-----VHAYAIRNG 379



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 158/370 (42%), Gaps = 24/370 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +   + + +N +IS     G  L AL  F  M   G+  +TY   ++L         + G
Sbjct: 208 MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
             +     KS   + V+V +ALI +YAK   + DAE +F  +  ++ V  N LLSG  + 
Sbjct: 268 MGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQN 327

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +L+   L   R M       D  ++  L+ A         G++VHAY IR    L +++ 
Sbjct: 328 ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRN--GLDSNMQ 385

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI+MY KC  V          G+  E    KD++ WT+++  Y +N    E I L+
Sbjct: 386 IGNTLIDMYAKCCCVKH-------MGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLF 438

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---YSCLVDL 342
             + + G   D +   +V+ ACS      L    F   +H Y  +         + +V++
Sbjct: 439 RKVQVKGMDVDPMMIGSVLRACS-----GLKSRNFIREIHGYVFKRDLADIMLQNAIVNV 493

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC-HDCGKFE-LGKLAAQKALELDP 400
               G  D A +    +      S  +  W ++++ C H+    E L    + K   + P
Sbjct: 494 YGEVGHRDYARRAFESIR-----SKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQP 548

Query: 401 HNVGIYVMLS 410
            ++ I   LS
Sbjct: 549 DSIAIISALS 558



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 152/345 (44%), Gaps = 48/345 (13%)

Query: 51  PLPFNVVISDFCRNGSPLYALKTFSFM------------HVHGIFLDTYALCSSLTASTS 98
           PLP   +  +    G+   A ++ + +            H H + LD   LC       +
Sbjct: 8   PLPLKSISVNTLNKGTLNPAFQSLTLLSTHPLATPSRLEHAHSLLLD---LC------VA 58

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           VK    G+Q+ A + KS    S F+ + L+ +Y K   + DA  +FDE+  +     NA+
Sbjct: 59  VKALPQGQQLHARLLKSHL--SAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAM 116

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           +  +  +  +   +EL + M  LG+  D  T  ++L+AC  L  +  G ++H   ++  C
Sbjct: 117 MGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVK--C 174

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
             G  VF+ ++LI MYGKCG +  A  +F+  G  +E E   D V W S++  +   G  
Sbjct: 175 GFGEFVFVCNALIAMYGKCGDLGGARVLFD--GIMMEKE---DTVSWNSIISAHVTEGKC 229

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS- 337
            E + L+  M   G   +   FV  +        VKLG+      +H   L+    H++ 
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMG-----IHGAALKSN--HFAD 282

Query: 338 -----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
                 L+ +  + G ++ A ++   ML R + S     W  LLS
Sbjct: 283 VYVANALIAMYAKCGRMEDAERVFASMLCRDYVS-----WNTLLS 322


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 136/394 (34%), Positives = 210/394 (53%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           FN +   + R  +PL A   F+ +   G+F D Y   S L A  S K    G+Q+     
Sbjct: 89  FNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAI 148

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G   +V+V   LI++Y     +  A  +FD+I     V  NA+++GY         L 
Sbjct: 149 KLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALS 208

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R + A  L     T+ ++L +CA L A + G+ +H Y+ +   N    V + ++LI+M
Sbjct: 209 LFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFN--RFVKVDTALIDM 266

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A+ VF       E    +D   W++M+  Y  +G+  + + L++ M   GT
Sbjct: 267 YAKCGSLDDAVCVF-------ENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGT 319

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +PDE+ F+ ++ ACSHTG V+ G EYF  M   Y + PG +HY C+VDLL RAG L++A+
Sbjct: 320 EPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAY 379

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           + I  +  R     +  +W  LLSAC   G  ELGK   ++  ELD  + G Y++LSNL 
Sbjct: 380 EFIVGLPIR----PTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLC 435

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A+   W+++  +R+LM E+G+ K  GCS +EV  
Sbjct: 436 ARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNN 469



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 136/310 (43%), Gaps = 39/310 (12%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID---LYAKLLLIHDAELMFDEI 147
           S L   TS+++    KQ+QA   K+   S + V +  I+   L      +  A  +FD+I
Sbjct: 25  SLLPKCTSLREL---KQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQI 81

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           P  + V  N +  GY           L   +   GL  D +T  +LL+ACA   A E GR
Sbjct: 82  PQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGR 141

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q+H   I+    L  +V++  +LI MY  C  +  A +VF+             VV + +
Sbjct: 142 QLHCLAIK--LGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPC-------VVTYNA 192

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           M+  Y R     E + L+  +     KP +V  ++V+S+C+  G + LG    +WM H+Y
Sbjct: 193 MITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG----KWM-HEY 247

Query: 328 KLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDR---------------GHGSSS 368
             + G   +    + L+D+  + G LD A  +   M  R               GHG  +
Sbjct: 248 VKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKA 307

Query: 369 VSMWGALLSA 378
           VS++  +  A
Sbjct: 308 VSLFKEMRKA 317



 Score = 45.1 bits (105), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 44/230 (19%)

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL--VTKALQVFNL 249
           +LL  C  L      +Q+ A+ I+   +L +D+ + +  I     C L   T ++Q    
Sbjct: 25  SLLPKCTSLREL---KQLQAFAIKT--HLHSDLSVLTKFINF---CSLNPTTTSMQ---H 73

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS- 308
           A H  +     D+VL+ +M   Y R         L+  +L +G  PD+  F +++ AC+ 
Sbjct: 74  AHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACAS 133

Query: 309 ----------HTGQVKLGIEYFEWM-------------------VHDYKLEPGPEHYSCL 339
                     H   +KLG+    ++                   V D   EP    Y+ +
Sbjct: 134 CKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAM 193

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           +    R    ++A  L  E+  R    + V+M  ++LS+C   G  +LGK
Sbjct: 194 ITGYARGSRPNEALSLFRELQARNLKPTDVTML-SVLSSCALLGALDLGK 242


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 215/399 (53%), Gaps = 15/399 (3%)

Query: 49   RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
            R+ +  N +I+ + +N   + A+  F  M   G+        S L A T       G+Q+
Sbjct: 615  RSVVSMNAIIAGYAQN-DLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQI 673

Query: 109  QAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPV-KNSVCANALLSGYCEAK 166
               + K G L    F+G +L+ +Y       DA+++F E    K+++   A++SG+ +  
Sbjct: 674  HCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNG 733

Query: 167  LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                 L+L + M       D  T +++LRAC+ L++   GR +H+ +      L +D   
Sbjct: 734  CSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFH--VGLDSDELT 791

Query: 227  QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
             S++++MY KCG +  ++QVF   G +       DV+ W SM+  + +NGY +  +K+++
Sbjct: 792  GSAVVDMYAKCGDMKSSVQVFEEMGSK------NDVISWNSMIVGFAKNGYAENALKIFD 845

Query: 287  AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
             M     +PD+V F+ V++ACSH G+V  G E F+ MVH YK+ P  +H +C++DLL R 
Sbjct: 846  EMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRW 905

Query: 347  GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
            G L +A     E +D+ +   +  +W  LL AC   G    G+ AA+K +EL+P N   Y
Sbjct: 906  GFLKEA----EEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPY 961

Query: 407  VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            V+LSN+YA    WDE+  +R  M+EKGL+K  GCSWI V
Sbjct: 962  VLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVV 1000



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 193/398 (48%), Gaps = 53/398 (13%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +NV+IS   + G  + A+  F  M   G+      L S L+A  S++   +G  V 
Sbjct: 313 NVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVH 372

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           A   K G  S+V+VGS+LI++YAK   +  A+ +FD +  +N V  NA+L GY +    +
Sbjct: 373 AQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYAS 432

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             ++L   M   G   D FT +++L ACA L   E GRQ+H+++I+   N   ++F++++
Sbjct: 433 KVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKH--NFEYNLFVENT 490

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L++MY KCG + +A Q F           N+D V W +++  Y +     E   ++  M+
Sbjct: 491 LVDMYAKCGALEEARQQFEFIR-------NRDNVSWNAIIVGYVQEEDEDEAFNMFRRMI 543

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCR 345
           ++G  PDEV+  +++S C++   ++ G +     VH + ++ G +      S L+D+  +
Sbjct: 544 LDGIAPDEVSLASILSGCANLQALEQGEQ-----VHCFLVKSGLQTCLYAGSSLIDMYVK 598

Query: 346 AGELD------------------------------KAWKLINEMLDRGHGSSSVSMWGAL 375
            G ++                              +A  L  EM + G   S ++ + +L
Sbjct: 599 CGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLVEAIDLFQEMQNEGLNPSEIT-FASL 657

Query: 376 LSACHDCGKFELGK----LAAQKALELDPHNVGIYVML 409
           L AC    K  LG+    L  ++ L  D   +G+ +++
Sbjct: 658 LDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLV 695



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 153/315 (48%), Gaps = 15/315 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHA   + GL     +   S L+  Y  C   + +         L+ RN + +N ++  +
Sbjct: 371 VHAQAIKQGL--NSNVYVGSSLINMYAKC---EKMEAAKKVFDALDERNLVLWNAMLGGY 425

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +NG     +K FS M   G + D +   S L+A   ++    G+Q+ + + K  +  ++
Sbjct: 426 AQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNL 485

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
           FV + L+D+YAK   + +A   F+ I  +++V  NA++ GY + +       + R M   
Sbjct: 486 FVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILD 545

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G+  D  +L+++L  CA L A E G QVH ++++    L   ++  SSLI+MY KCG + 
Sbjct: 546 GIAPDEVSLASILSGCANLQALEQGEQVHCFLVKS--GLQTCLYAGSSLIDMYVKCGAIE 603

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A  VF+    R        VV   +++  Y +N    E I L++ M   G  P E+ F 
Sbjct: 604 AARYVFSCMPSR-------SVVSMNAIIAGYAQNDLV-EAIDLFQEMQNEGLNPSEITFA 655

Query: 302 TVISACSHTGQVKLG 316
           +++ AC+   ++ LG
Sbjct: 656 SLLDACTGPYKLNLG 670



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 166/348 (47%), Gaps = 28/348 (8%)

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           T     + +R  K + A   K G+ S   +GSA++DLYAK   +  A   F+++  ++ +
Sbjct: 89  TPQRLAQASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDIL 148

Query: 154 CANALLSGYC-----EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
             N++LS Y      E  +W  G      +   G+  + FT + +L +CA L   + G+Q
Sbjct: 149 AWNSVLSMYSRQGSLEQVIWCFGS-----LQNCGVSPNQFTYAIVLSSCARLVDIDLGKQ 203

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           VH  +I+      +  F + SLI+MY KCG +  A ++F+         ++ D V WT+M
Sbjct: 204 VHCGVIKMGFEFNS--FCEGSLIDMYSKCGSLVDARKIFDAV-------VDPDTVSWTAM 254

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y + G  +E +K++E M   G  PD+VAFVTVI+AC   G++    + F  M +   
Sbjct: 255 IAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNV 314

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           +      ++ ++    + G   +A      M   G  S+  S  G++LSA         G
Sbjct: 315 VA-----WNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTR-STLGSVLSAIASLEALNYG 368

Query: 389 KLAAQKALELDPHNVGIYV--MLSNLYAKFCMWDEIGQLRELMKEKGL 434
            L   +A++    N  +YV   L N+YAK    +   ++ + + E+ L
Sbjct: 369 LLVHAQAIK-QGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNL 415



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 164/389 (42%), Gaps = 65/389 (16%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R+ L +N V+S + R GS    +  F  +   G+  + +     L++   + D   G
Sbjct: 142 LEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLG 201

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQV   V K G+  + F   +LID+Y+K   + DA  +FD +   ++V   A+++GY + 
Sbjct: 202 KQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQV 261

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM------------ 213
            L    L++   M  LGL  D      ++ AC GL   +    +   M            
Sbjct: 262 GLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMI 321

Query: 214 ---IRKCCNLGNDVFMQS-------SLIEMYGKCGLVTKALQVFN----LAGHRLEGEIN 259
              +++ C++    F ++       S     G       +L+  N    +    ++  +N
Sbjct: 322 SGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLN 381

Query: 260 KDVVLWTSMLGVYGR-------------------------------NGYFKEVIKLYEAM 288
            +V + +S++ +Y +                               NGY  +V+KL+  M
Sbjct: 382 SNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEM 441

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPEHYSCLVDLLCRAG 347
              G  PDE  + +++SAC+    +++G +   +++ H+++     E+   LVD+  + G
Sbjct: 442 RGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVEN--TLVDMYAKCG 499

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            L++A +    + +R + S     W A++
Sbjct: 500 ALEEARQQFEFIRNRDNVS-----WNAII 523


>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 602

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 138/403 (34%), Positives = 224/403 (55%), Gaps = 17/403 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +   + + +  +IS F +NG    A+  F  M    I  +     S ++A T + +  F 
Sbjct: 162 MEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCVTYVSVISACTGL-ETIFD 220

Query: 106 K--QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           +   + AHV K G+    FV S LID Y+K   I  A L+F     ++++  N+++SGY 
Sbjct: 221 QCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYS 280

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           +       L+L   M   GL+    TL+++L AC  L+  + GRQVH+ + +      ++
Sbjct: 281 QNLFGEEALKLFVEMRNNGLNPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSE--SN 338

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           VF+ S+L++MY KCG + +A  VF+ A       + K+ VLWTSM+  Y ++G   E + 
Sbjct: 339 VFVVSALLDMYSKCGSIDEARCVFDQA-------VEKNTVLWTSMITGYAQSGRGPEGLG 391

Query: 284 LYEAMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           L+E ++   G  PD + F  V++AC+H G +  GI+YF  M  DY L P  + Y+CLVDL
Sbjct: 392 LFERLVTEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLDQYACLVDL 451

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
             R G L KA     E+++      +  MWG+ LS+C   G+ ELG+ AA K  +++P +
Sbjct: 452 YVRNGHLRKA----KELMEAIPCEPNSVMWGSFLSSCKLYGEAELGREAADKLFKMEPCS 507

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              YV ++++YA+  +W E+ ++R+LMK+KGL+K  G SW+EV
Sbjct: 508 TAPYVAMASIYAQAGLWSEVVEIRKLMKQKGLRKSAGWSWVEV 550



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 159/320 (49%), Gaps = 24/320 (7%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           AL++F  M+  G     + LC++L +   + +   G Q+ A + ++G+  ++F+ SAL+D
Sbjct: 85  ALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALVD 144

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           LYAK   I DA+ +FD +   + V   +++SG+ +       +   + M    +  +  T
Sbjct: 145 LYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCVT 204

Query: 190 LSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
             +++ AC GL    +    +HA++++     G   F+ S LI+ Y KCG + +A+ +F 
Sbjct: 205 YVSVISACTGLETIFDQCALLHAHVVK--LGFGVKTFVVSCLIDCYSKCGRIDQAVLLFG 262

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                    I +D +L+ SM+  Y +N + +E +KL+  M  NG  P +    ++++AC 
Sbjct: 263 TT-------IERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNACG 315

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGH 364
               ++ G +     VH    + G E      S L+D+  + G +D+A  + ++ +++  
Sbjct: 316 SLTILQQGRQ-----VHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFDQAVEK-- 368

Query: 365 GSSSVSMWGALLSACHDCGK 384
              +  +W ++++     G+
Sbjct: 369 ---NTVLWTSMITGYAQSGR 385


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 233/441 (52%), Gaps = 57/441 (12%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++   +N+++S +   G    AL  F  M + G+  ++  + S+++A T++   R G+++
Sbjct: 175 KDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 234

Query: 109 QAHVTKSGWLSS-VFVGSALIDLYAK---------------------------------- 133
             +  K   L S + VG++L+D YAK                                  
Sbjct: 235 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQY 294

Query: 134 ---------LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
                       +H A  +F E+  ++ V  N+++S   ++      L+L+R M    ++
Sbjct: 295 GDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 354

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            +  T+ + L AC+ L+A   G+++H ++IR  C L    F+ +SLI+MYG+CG + K+ 
Sbjct: 355 VNTVTMVSALPACSKLAALRQGKEIHQFIIR--CGLDTCNFILNSLIDMYGRCGSIQKSR 412

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           ++F+L   R       D+V W  M+ VYG +G+  + + L++     G KP+ + F  ++
Sbjct: 413 RIFDLMPQR-------DLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLL 465

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           SACSH+G ++ G +YF+ M  +Y ++P  E Y+C+VDLL RAG+ ++  + I +M     
Sbjct: 466 SACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM----P 521

Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQ 424
              + ++WG+LL AC      +L + AA+   EL+P + G YV+++N+Y+    W++  +
Sbjct: 522 FEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAK 581

Query: 425 LRELMKEKGLKKDVGCSWIEV 445
           +R LMKE+G+ K  GCSWIEV
Sbjct: 582 IRCLMKERGVTKPPGCSWIEV 602



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 161/370 (43%), Gaps = 52/370 (14%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           ++ YA  S L     + + R G QV A +  +G     F+GS L+++Y +   + DA  M
Sbjct: 10  IEIYA--SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRM 67

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           FD++  +N     A++  YC    +   ++L  LM   G+  DHF    + +AC+ L   
Sbjct: 68  FDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNY 127

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDV 262
             G+ V+ YM+        +  ++ S+++M+ KCG +  A + F         EI  KDV
Sbjct: 128 RVGKDVYDYMLS--IGFEGNSCVKGSILDMFIKCGRMDIARRFFE--------EIEFKDV 177

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
            +W  M+  Y   G FK+ + ++  M++ G KP+ +   + +SAC++   ++ G E   +
Sbjct: 178 FMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY 237

Query: 323 MVHDYKLEPGPEHYSCLVDLL--CRAGELDK------------AW--------------- 353
            +   +L+      + LVD    CR+ E+ +            +W               
Sbjct: 238 CIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDG 297

Query: 354 KLINEMLDRGH---------GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           K   E   R H          +  V +W +++SAC   G+  +  L   + + L    V 
Sbjct: 298 KAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGR-SVNALDLLREMNLSNVEVN 356

Query: 405 IYVMLSNLYA 414
              M+S L A
Sbjct: 357 TVTMVSALPA 366



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 169/407 (41%), Gaps = 53/407 (13%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN   +  ++  +C  G     +K F  M   G+  D +       A + +K+ R G
Sbjct: 71  MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 130

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V  ++   G+  +  V  +++D++ K   +  A   F+EI  K+    N ++SGY   
Sbjct: 131 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 190

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +   L + R M   G+  +  T+++ + AC  LS    GR++H Y I K   L +D+ 
Sbjct: 191 GEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCI-KVEELDSDLL 249

Query: 226 MQSSLIEMYGKCGLVTKALQVFNL---------------AGHRLEGE------------- 257
           + +SL++ Y KC  V  A + F +                G    G+             
Sbjct: 250 VGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHI 309

Query: 258 --------INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                     +DVV+W S++    ++G     + L   M ++  + + V  V+ + ACS 
Sbjct: 310 ACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSK 369

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
              ++ G E     +H + +  G +      + L+D+  R G + K+ ++ + M  R   
Sbjct: 370 LAALRQGKE-----IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLV 424

Query: 366 SSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           S     W  ++S    H  G   +      + + L P+++    +LS
Sbjct: 425 S-----WNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLS 466



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 138/319 (43%), Gaps = 46/319 (14%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ R+ + +N +IS   ++G  + AL     M++  + ++T  + S+L A + +   R G
Sbjct: 317 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG 376

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++   + + G  +  F+ ++LID+Y +   I  +  +FD +P ++ V  N ++S Y   
Sbjct: 377 KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMH 436

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L +    +GL  +H T + LL AC+           H+              
Sbjct: 437 GFGMDAVNLFQQFRTMGLKPNHITFTNLLSACS-----------HS-------------- 471

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
                       GL+ +  + F +   + E  ++  V  +  M+ +  R G F E ++  
Sbjct: 472 ------------GLIEEGWKYFKMM--KTEYAMDPAVEQYACMVDLLSRAGQFNETLEFI 517

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSCLVDLLC 344
           E M     +P+   + +++ AC       L  EY    +  ++LEP    +Y  + ++  
Sbjct: 518 EKMPF---EPNAAVWGSLLGACRIHCNPDLA-EYAARYL--FELEPQSSGNYVLMANIYS 571

Query: 345 RAGELDKAWKLINEMLDRG 363
            AG  + A K+   M +RG
Sbjct: 572 AAGRWEDAAKIRCLMKERG 590


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 150/408 (36%), Positives = 212/408 (51%), Gaps = 27/408 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + ++ VI+ + + G    AL  F  M + G   +   L S L+          GK+  
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETH 390

Query: 110 AHVTKSGWL---------SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS--VCANAL 158
            H  K  W+           + V +ALID+Y+K      A  MFD IP K+   V    L
Sbjct: 391 CHAIK--WILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 448

Query: 159 LSGYCEAKLWAGGLELVR--LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           + G  +       LEL    L P   +  + FT+S  L ACA L A  FGRQ+HAY++R 
Sbjct: 449 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 508

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
                  +F+ + LI+MY K G V  A  VF+    R       + V WTS++  YG +G
Sbjct: 509 RFESAM-LFVANCLIDMYSKSGDVDAARVVFDNMHQR-------NGVSWTSLMTGYGMHG 560

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
             +E ++++  M   G  PD V FV V+ ACSH+G V  GI YF  M  D+ + PG EHY
Sbjct: 561 RGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHY 620

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
           +C+VDLL RAG LD+A +LI  M  +     + ++W ALLSAC      ELG+ AA + L
Sbjct: 621 ACMVDLLSRAGRLDEAMELIRGMPMK----PTPAVWVALLSACRVYANVELGEYAANQLL 676

Query: 397 ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           EL+  N G Y +LSN+YA    W ++ ++R LMK  G+KK  GCSW++
Sbjct: 677 ELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQ 724



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 207/459 (45%), Gaps = 67/459 (14%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           +VHA  F +G      +   + L+  Y  C   +N   + + ++     + + +N +++ 
Sbjct: 147 SVHAVVFASGFEWNVFV--GNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 204

Query: 61  FCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS 119
           + + G  + A+K F  M    GI  D  +L + L A  SV     GKQV  +  +SG   
Sbjct: 205 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 264

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC---------------- 163
            VFVG+A++D+YAK  ++ +A  +F+ + VK+ V  NA+++GY                 
Sbjct: 265 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIR 324

Query: 164 EAKL------WAG-------------GLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           E K+      W+               L++ R M   G + +  TL +LL  CA      
Sbjct: 325 EEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLL 384

Query: 205 FGRQVHAYMIRKCCNL-----GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
            G++ H + I+   NL     G+D+ + ++LI+MY KC     A  +F+L   +     +
Sbjct: 385 HGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPK-----D 439

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM--NGTKPDEVAFVTVISACSHTGQVKLGI 317
           + VV WT ++G   ++G   E ++L+  ML   N   P+       + AC+  G ++ G 
Sbjct: 440 RSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGR 499

Query: 318 EYFEWMVHDYKLEPGPEH-----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           +     +H Y L    E       +CL+D+  ++G++D A  + + M    H  + VS W
Sbjct: 500 Q-----IHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM----HQRNGVS-W 549

Query: 373 GALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            +L++    H  G+  L      + + L P  V   V+L
Sbjct: 550 TSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVL 588



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 171/368 (46%), Gaps = 54/368 (14%)

Query: 71  LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL 130
           L+ +  M   G   D Y     L A   +   R G  V A V  SG+  +VFVG+ L+ +
Sbjct: 111 LQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSM 170

Query: 131 YAKLLLIHDAELMFDEIP---VKNSVCANALLSGYCEAKLWAGGLELV-RLMPALGLDYD 186
           Y +     +A  +FDE+    V + V  N++++ Y +       +++  R+   LG+  D
Sbjct: 171 YGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPD 230

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
             +L  +L ACA + A   G+QVH Y +R    L  DVF+ +++++MY KCG++ +A +V
Sbjct: 231 AVSLVNVLPACASVGAWSRGKQVHGYALRS--GLFEDVFVGNAVVDMYAKCGMMEEANKV 288

Query: 247 FN-------------LAGHR---------------LEGEINKDVVLWTSMLGVYGRNGYF 278
           F              + G+                 E +I  +VV W++++  Y + G  
Sbjct: 289 FERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLG 348

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY----FEWMVHDYKLEPGPE 334
            E + ++  M + G++P+ V  V+++S C+  G +  G E      +W+++  + +PG +
Sbjct: 349 FEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDD 408

Query: 335 --HYSCLVDLL--CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
               + L+D+   C++ +  +A   +    DR     SV  W  L+      G+      
Sbjct: 409 LMVINALIDMYSKCKSPKAARAMFDLIPPKDR-----SVVTWTVLIGGNAQHGE------ 457

Query: 391 AAQKALEL 398
            A +ALEL
Sbjct: 458 -ANEALEL 464



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 103/258 (39%), Gaps = 34/258 (13%)

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           S L   C  L++AE    +H  ++ +   L +D    + +I MY       KAL V    
Sbjct: 33  STLFHQCKSLASAEL---IHQQLLVQ--GLPHD---PTHIISMYLTFNSPAKALSVL--- 81

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
             RL    +  V  W  ++      G+ ++V++LY  M   G +PD   F  V+ AC   
Sbjct: 82  -RRLHPS-SHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEI 139

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
              + G       VH      G E      + LV +  R G  + A ++ +EM +RG G 
Sbjct: 140 PSFRCGAS-----VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVG- 193

Query: 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY---VMLSNLY---AKFCMWD 420
             +  W ++++A    G      + A K  E    ++GI    V L N+    A    W 
Sbjct: 194 -DLVSWNSIVAAYMQGGD----SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWS 248

Query: 421 EIGQLRELMKEKGLKKDV 438
              Q+       GL +DV
Sbjct: 249 RGKQVHGYALRSGLFEDV 266


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 140/416 (33%), Positives = 215/416 (51%), Gaps = 18/416 (4%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCR-----NGSPLYALKTFSFMHVHGIFLDTYAL 89
           +L   T   K +   N + +N +I+ F +     +     A+  F  M   G+    +  
Sbjct: 194 DLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTF 253

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
            S L A ++++    GKQ+ A + K    S  F+G+AL++LY+    I D    F   P 
Sbjct: 254 SSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPK 313

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
            + V   +L+ G+ +   + GGL L   +   G   D FT+S +L ACA L+A + G Q+
Sbjct: 314 LDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQI 373

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           HAY I+    +GN   +Q+S I MY KCG +  A   F           N D+V W+ M+
Sbjct: 374 HAYAIK--TGIGNFTIIQNSQICMYAKCGDIDSANMTFKETK-------NPDIVSWSVMI 424

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
               ++G  KE + L+E M  +G  P+ + F+ V+ ACSH G V+ G+ YFE M  D+ +
Sbjct: 425 SSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGI 484

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
            P  +H +C+VDLL RAG L +A   I   +D G     V MW +LLSAC      + GK
Sbjct: 485 TPNVKHSACIVDLLGRAGRLAEAESFI---MDSGFEGDPV-MWRSLLSACRVHKATDTGK 540

Query: 390 LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             A++ +EL+P     YV+L N+Y    +     ++R LMK++G+KK+ G SWIEV
Sbjct: 541 RVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEV 596



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 168/373 (45%), Gaps = 28/373 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +IS + + G     +  F    +  + LD +   ++L+      D R G+ +
Sbjct: 4   RNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLI 63

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A +T SG    V + ++LID+Y K   I  A L+F+     +SV  N+L++GY      
Sbjct: 64  HALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSN 123

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAG--LSAAEFGRQVHAYMIRKCCNLGNDVFM 226
              L L+  M   GL+ + + L + L+AC     S+ E G+ +H   ++   +L  DV +
Sbjct: 124 DEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDL--DVVV 181

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR-----NGYFKEV 281
            ++L++ Y K G +  A ++F L         + +VV++ +M+  + +     + +  E 
Sbjct: 182 GTALLDTYAKIGDLEDATKIFKLMP-------DPNVVMYNAMIAGFLQMETMADEFANEA 234

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           + L+  M   G KP E  F +++ ACS     + G +     +  Y L+      + LV+
Sbjct: 235 MYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECG-KQIHAQIFKYNLQSDEFIGNALVE 293

Query: 342 LLCRAGELDKAWKLINEM--LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL--E 397
           L   +G ++   K  +    LD       V  W +L+      G+FE G     + L   
Sbjct: 294 LYSLSGSIEDGLKCFHSTPKLD-------VVSWTSLIVGHVQNGQFEGGLTLFHELLFSG 346

Query: 398 LDPHNVGIYVMLS 410
             P    I +MLS
Sbjct: 347 RKPDEFTISIMLS 359



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 113/280 (40%), Gaps = 47/280 (16%)

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +P +N V  N+L+SGY +   +   + L +      L  D FT S  L  C        G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           R +HA +      LG  V + +SLI+MY KCG +  A  VF  A          D V W 
Sbjct: 61  RLIHALIT--VSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADEL-------DSVSWN 111

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-------------HTGQV 313
           S++  Y R G   E+++L   ML +G   +  A  + + AC              H   V
Sbjct: 112 SLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAV 171

Query: 314 KLGIEY-----------------FEWMVHDYKLEPGPE--HYSCLV----DLLCRAGEL- 349
           KLG++                   E     +KL P P    Y+ ++     +   A E  
Sbjct: 172 KLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFA 231

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           ++A  L  EM  RG   S  + + ++L AC     FE GK
Sbjct: 232 NEAMYLFFEMQSRGMKPSEFT-FSSILKACSTIEAFECGK 270


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 140/416 (33%), Positives = 215/416 (51%), Gaps = 18/416 (4%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCR-----NGSPLYALKTFSFMHVHGIFLDTYAL 89
           +L   T   K +   N + +N +I+ F +     +     A+  F  M   G+    +  
Sbjct: 273 DLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTF 332

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
            S L A ++++    GKQ+ A + K    S  F+G+AL++LY+    I D    F   P 
Sbjct: 333 SSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPK 392

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
            + V   +L+ G+ +   + GGL L   +   G   D FT+S +L ACA L+A + G Q+
Sbjct: 393 LDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQI 452

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           HAY I+    +GN   +Q+S I MY KCG +  A   F           N D+V W+ M+
Sbjct: 453 HAYAIKT--GIGNFTIIQNSQICMYAKCGDIDSANMTFKETK-------NPDIVSWSVMI 503

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
               ++G  KE + L+E M  +G  P+ + F+ V+ ACSH G V+ G+ YFE M  D+ +
Sbjct: 504 SSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGI 563

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
            P  +H +C+VDLL RAG L +A   I   +D G     V MW +LLSAC      + GK
Sbjct: 564 TPNVKHSACIVDLLGRAGRLAEAESFI---MDSGFEGDPV-MWRSLLSACRVHKATDTGK 619

Query: 390 LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             A++ +EL+P     YV+L N+Y    +     ++R LMK++G+KK+ G SWIEV
Sbjct: 620 RVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEV 675



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 168/373 (45%), Gaps = 28/373 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +IS + + G     +  F    +  + LD +   ++L+      D R G+ +
Sbjct: 83  RNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLI 142

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A +T SG    V + ++LID+Y K   I  A L+F+     +SV  N+L++GY      
Sbjct: 143 HALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSN 202

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAG--LSAAEFGRQVHAYMIRKCCNLGNDVFM 226
              L L+  M   GL+ + + L + L+AC     S+ E G+ +H   ++   +L  DV +
Sbjct: 203 DEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDL--DVVV 260

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR-----NGYFKEV 281
            ++L++ Y K G +  A ++F L         + +VV++ +M+  + +     + +  E 
Sbjct: 261 GTALLDTYAKIGDLEDATKIFKLMP-------DPNVVMYNAMIAGFLQMETMADEFANEA 313

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           + L+  M   G KP E  F +++ ACS     + G +     +  Y L+      + LV+
Sbjct: 314 MYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECG-KQIHAQIFKYNLQSDEFIGNALVE 372

Query: 342 LLCRAGELDKAWKLINEM--LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL--E 397
           L   +G ++   K  +    LD       V  W +L+      G+FE G     + L   
Sbjct: 373 LYSLSGSIEDGLKCFHSTPKLD-------VVSWTSLIVGHVQNGQFEGGLTLFHELLFSG 425

Query: 398 LDPHNVGIYVMLS 410
             P    I +MLS
Sbjct: 426 RKPDEFTISIMLS 438



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 142/346 (41%), Gaps = 47/346 (13%)

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G+ LD+      +  ST       GK    H+ K+ +   +F+ + L+ +Y K      A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
           + +FD +P +N V  N+L+SGY +   +   + L +      L  D FT S  L  C   
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                GR +HA +      LG  V + +SLI+MY KCG +  A  VF       E     
Sbjct: 134 LDLRLGRLIHALIT--VSGLGGPVLLTNSLIDMYCKCGRIDWARLVF-------ESADEL 184

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS------------ 308
           D V W S++  Y R G   E+++L   ML +G   +  A  + + AC             
Sbjct: 185 DSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKM 244

Query: 309 -HTGQVKLGIEY-----------------FEWMVHDYKLEPGPE--HYSCLV----DLLC 344
            H   VKLG++                   E     +KL P P    Y+ ++     +  
Sbjct: 245 LHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMET 304

Query: 345 RAGEL-DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
            A E  ++A  L  EM  RG   S  + + ++L AC     FE GK
Sbjct: 305 MADEFANEAMYLFFEMQSRGMKPSEFT-FSSILKACSTIEAFECGK 349



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 15/198 (7%)

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
           LGL  D  T + L++      +   G+  H +MI+ C      +F+ ++L+ MY KCG  
Sbjct: 13  LGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTC--FKPCLFLLNNLLYMYCKCGET 70

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A ++F+    R       +VV W S++  Y + G++ EV+ L++   M+  + D+  F
Sbjct: 71  DVAKKLFDRMPKR-------NVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTF 123

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
              +S C  T  ++LG      ++    L       + L+D+ C+ G +D A +L+ E  
Sbjct: 124 SNALSVCGRTLDLRLG-RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWA-RLVFESA 181

Query: 361 DRGHGSSSVSMWGALLSA 378
           D      SVS W +L++ 
Sbjct: 182 DE---LDSVS-WNSLIAG 195


>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 151/431 (35%), Positives = 232/431 (53%), Gaps = 22/431 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I  Q+ L+  Y  C   +N   + + +     R+ + +  +I+ F R G    AL TFS 
Sbjct: 141 IYVQNSLVHFYGVCGESRNACKVFDQMPV---RDVVSWTGIITGFTRTGLYKEALDTFSK 197

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M V    L TY +C+ L +S  V     GK +   + K   L S+  G+ALID+Y K   
Sbjct: 198 MDVEP-NLATY-VCA-LVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQ 254

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSALLR 195
           + DA  +F E+  K+ V  N+++SG    +     +EL  +M  + G+  D   L+++L 
Sbjct: 255 LSDAMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLS 314

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           ACA L A ++GR VH Y++     +  D  + +++++MY KCG +  AL++FN       
Sbjct: 315 ACASLGAVDYGRWVHEYVL--SAGIKWDTHIGTAIVDMYAKCGYIETALKIFN------- 365

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
           G   K+V  W ++LG    +G+  E ++ +E M+  G KP+ V F+ +++AC HTG V  
Sbjct: 366 GIRRKNVFTWNALLGGLAIHGHGHESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDE 425

Query: 316 GIEYFEWM-VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
           G  YF  M   +Y L P  EHY CL+DL CRAG LD+A +LI  M  +      V + GA
Sbjct: 426 GRRYFHKMKTREYNLSPKLEHYGCLIDLFCRAGLLDEALELIKAMPVK----PDVRICGA 481

Query: 375 LLSACHDCGKF-ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           +LSAC   G   EL K      LE++  + G+YV+LSN++A    WD++ ++R LMK KG
Sbjct: 482 VLSACKSRGTLMELPKEILDSFLEMEFEDSGVYVLLSNIFAANRRWDDVSRIRRLMKVKG 541

Query: 434 LKKDVGCSWIE 444
           + K  G S IE
Sbjct: 542 ISKVPGSSSIE 552



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 159/369 (43%), Gaps = 31/369 (8%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           +   +N ++S +     P   +  +     +G   D +       A       R GKQ+ 
Sbjct: 70  SSFSYNTLLSSYAVCDKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIH 129

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
             VTK G+   ++V ++L+  Y       +A  +FD++PV++ V    +++G+    L+ 
Sbjct: 130 GTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLYK 189

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             L+    M    ++ +  T    L +   +     G+ +H  ++++   +  +    ++
Sbjct: 190 EALDTFSKMD---VEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLET--GNA 244

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           LI+MY KC  ++ A+ VF        GE+  KD V W SM+          E I+L+  M
Sbjct: 245 LIDMYVKCEQLSDAMTVF--------GELQKKDKVSWNSMISGLVHCERSNEAIELFSMM 296

Query: 289 LM-NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE---HY-SCLVDLL 343
              +G KPD     +V+SAC+  G V    +Y  W VH+Y L  G +   H  + +VD+ 
Sbjct: 297 QTSSGIKPDGHILTSVLSACASLGAV----DYGRW-VHEYVLSAGIKWDTHIGTAIVDMY 351

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPH 401
            + G ++ A K+ N     G    +V  W ALL   A H  G   L        L   P+
Sbjct: 352 AKCGYIETALKIFN-----GIRRKNVFTWNALLGGLAIHGHGHESLRYFEEMVKLGFKPN 406

Query: 402 NVGIYVMLS 410
            V    +L+
Sbjct: 407 LVTFLAILN 415


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 196/345 (56%), Gaps = 23/345 (6%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL----- 159
           GK +   V K G      V ++LI++Y KL  +  A  +F+E+PV++ V  N+++     
Sbjct: 183 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 242

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           +GY E      G++L  LM   G++ D  T+ ALLRAC           +HAY+ R  C 
Sbjct: 243 NGYAEK-----GMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR--CG 295

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
              D+ + ++L+ +Y K G +  +  +F       E   ++D + WT+ML  Y  +   +
Sbjct: 296 FNADIIIATALLNLYAKLGRLNASEDIF-------EEIKDRDRIAWTAMLAGYAVHACGR 348

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E IKL++ M+  G + D V F  ++SACSH+G V+ G +YFE M   Y++EP  +HYSC+
Sbjct: 349 EAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCM 408

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL R+G L+ A++LI  M        S  +WGALL AC   G  ELGK  A++ L LD
Sbjct: 409 VDLLGRSGRLEDAYELIKSM----PMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLD 464

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           P +   Y+MLSN+Y+   +W +  ++R LMKE+ L ++ GCS+IE
Sbjct: 465 PSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIE 509



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 151/322 (46%), Gaps = 21/322 (6%)

Query: 84  LDTYALCSSLT-ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
              Y++  SL  A +S     +   + A V KS   S  F+G  L+ +Y KL    DA+ 
Sbjct: 59  FQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQR 118

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLE-LVRLMPALGLDYDHFTLSALLRACAGLS 201
           +FDE+P K+ V  N+L+SG          L    R+    G   +  TL +++ ACA + 
Sbjct: 119 LFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMG 178

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
           A + G+ +H  +++    +     + +SLI MYGK G +  A Q+F       E    + 
Sbjct: 179 ALDEGKSLHGVVVK--LGMSGKAKVVNSLINMYGKLGFLDAASQLF-------EEMPVRS 229

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           +V W SM+ ++  NGY ++ + L+  M   G  PD+   V ++ AC+ TG  +   E   
Sbjct: 230 LVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA-ESIH 288

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--AC 379
             +H           + L++L  + G L+ +  +  E+ DR   +     W A+L+  A 
Sbjct: 289 AYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIA-----WTAMLAGYAV 343

Query: 380 HDCGK--FELGKLAAQKALELD 399
           H CG+   +L  L  ++ +E+D
Sbjct: 344 HACGREAIKLFDLMVKEGVEVD 365



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 140/315 (44%), Gaps = 46/315 (14%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++     NG     +  F+ M   GI  D   + + L A T     R  + +
Sbjct: 228 RSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESI 287

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A++ + G+ + + + +AL++LYAKL  ++ +E +F+EI  ++ +   A+L+GY      
Sbjct: 288 HAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACG 347

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              ++L  LM   G++ DH T + LL AC+     E G++    M               
Sbjct: 348 REAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIM--------------- 392

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
              E+Y                  R+E  ++     ++ M+ + GR+G  ++  +L ++M
Sbjct: 393 --SEVY------------------RVEPRLDH----YSCMVDLLGRSGRLEDAYELIKSM 428

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP-EHYSCLVDLLCRAG 347
            M   +P    +  ++ AC   G V+LG E  E ++    L+P    +Y  L ++   AG
Sbjct: 429 PM---EPSSGVWGALLGACRVYGNVELGKEVAEQLL---SLDPSDHRNYIMLSNIYSAAG 482

Query: 348 ELDKAWKLINEMLDR 362
               A K+   M +R
Sbjct: 483 LWRDASKVRALMKER 497


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 234/454 (51%), Gaps = 28/454 (6%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTN----CLKFLNP---RNPLPF 54
            H      GL L   +I      +P   C H  N  + TN     LK  +    ++   +
Sbjct: 18  THTRSLRKGLQLHGQVIKLGFEAIPLV-CHHLINFYSKTNLPHSSLKLFDSFPHKSATTW 76

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           + VIS F +N  PL AL+ F  M  HG+  D + L ++  +  ++        + A   K
Sbjct: 77  SSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLK 136

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           +     VFVGS+L+D YAK   ++ A  +FDE+P KN V  + ++ GY +  L    L L
Sbjct: 137 TAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNL 196

Query: 175 VRLMPALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            +   AL  DYD     FTLS++LR C+  +  E G+QVH    +   +  +  F+ SSL
Sbjct: 197 FK--RALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFK--TSFDSSCFVASSL 252

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           I +Y KCG+V    +VF     R  G       +W +ML    ++ +     +L+E M  
Sbjct: 253 ISLYSKCGVVEGGYKVFEEVKVRNLG-------MWNAMLIACAQHAHTGRTFELFEEMER 305

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G KP+ + F+ ++ ACSH G V+ G   F  M  ++ +EPG +HY+ LVDLL RAG+L+
Sbjct: 306 VGVKPNFITFLCLLYACSHAGLVEKGEHCFGLM-KEHGIEPGSQHYATLVDLLGRAGKLE 364

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +A  +I EM  +     + S+WGALL+ C   G  EL    A K  E+   + GI V+LS
Sbjct: 365 EAVLVIKEMPMQ----PTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLS 420

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           N YA    W+E  + R++M+++G+KK+ G SW+E
Sbjct: 421 NAYAAAGRWEEAARARKMMRDQGIKKETGLSWVE 454



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 141/312 (45%), Gaps = 21/312 (6%)

Query: 82  IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE 141
           +  D   +C  L   T  +  R G Q+   V K G+ +   V   LI+ Y+K  L H + 
Sbjct: 3   VLSDCRDICKVLVWFTHTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSL 62

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            +FD  P K++   ++++S + +  L    L   R M   GL  D  TL    ++ A LS
Sbjct: 63  KLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALS 122

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
           +      +HA  ++   +  +DVF+ SSL++ Y KCG V  A +VF+   H       K+
Sbjct: 123 SLPLALSLHALSLKTAHH--HDVFVGSSLVDTYAKCGDVNLARKVFDEMPH-------KN 173

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMN--GTKPDEVAFVTVISACSHTGQVKLGIEY 319
           VV W+ M+  Y + G  +E + L++  L      + ++    +V+  CS +   +LG + 
Sbjct: 174 VVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELG-KQ 232

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
              +      +      S L+ L  + G ++  +K+  E+  R  G     MW A+L AC
Sbjct: 233 VHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLG-----MWNAMLIAC 287

Query: 380 ----HDCGKFEL 387
               H    FEL
Sbjct: 288 AQHAHTGRTFEL 299


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 128/394 (32%), Positives = 225/394 (57%), Gaps = 17/394 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I+ + +N  P+ AL  F  M   G+  D   + S  +    + D R G+ V
Sbjct: 312 RDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAV 371

Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
              V +  WL   + +G+AL+++YAKL  I  A  +F+++P ++ +  N L++GY +  L
Sbjct: 372 HGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGL 431

Query: 168 WAGGLELVRLMP-ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
            +  ++   +M     +  +  T  ++L A + + A + G ++H  +I+ C  L  DVF+
Sbjct: 432 ASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFL--DVFV 489

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV-VLWTSMLGVYGRNGYFKEVIKLY 285
            + LI+MYGKCG +  A+ +F         EI ++  V W +++   G +G+ ++ ++L+
Sbjct: 490 ATCLIDMYGKCGRLEDAMSLFY--------EIPQETSVPWNAIISSLGIHGHGEKALQLF 541

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + M  +G K D + FV+++SACSH+G V      F+ M  +Y+++P  +HY C+VDL  R
Sbjct: 542 KDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGR 601

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L+KA+ L++ M  +    +  S+WG LL+AC   G  ELG  A+ + LE+D  NVG 
Sbjct: 602 AGYLEKAYNLVSNMPIQ----ADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGY 657

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439
           YV+LSN+YA    W+   ++R L +++GL+K  G
Sbjct: 658 YVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPG 691



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 164/331 (49%), Gaps = 15/331 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +N +IS FC+NG+   AL+    M    + +DT  + S L       D   G  V
Sbjct: 211 RDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLV 270

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +V K G  S VFV +ALI++Y+K   + DA+ +FD + V++ V  N++++ Y +    
Sbjct: 271 HLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDP 330

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L   + M  +G+  D  T+ +L      LS    GR VH +++R C  L  D+ + +
Sbjct: 331 VTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVR-CRWLEVDIVIGN 389

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+ MY K G +  A  VF       E   ++DV+ W +++  Y +NG   E I  Y  M
Sbjct: 390 ALVNMYAKLGSIDCARAVF-------EQLPSRDVISWNTLITGYAQNGLASEAIDAYNMM 442

Query: 289 LMNGT-KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
               T  P++  +V+++ A SH G ++ G++    ++ +  L       +CL+D+  + G
Sbjct: 443 EEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNC-LFLDVFVATCLIDMYGKCG 501

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            L+ A  L  E+       +SV  W A++S+
Sbjct: 502 RLEDAMSLFYEIPQE----TSVP-WNAIISS 527



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 171/363 (47%), Gaps = 21/363 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFS- 75
           ++  ++L+  Y T     +L   +   K +  +N   +N ++S + R G    ++   + 
Sbjct: 83  VVLLTQLVTLYATL---GDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTE 139

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            + + G+  D Y     L A  S+ D   G+++   V K G+   V+V ++LI LY++  
Sbjct: 140 LLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYVAASLIHLYSRFG 196

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
            +  A  +F ++PV++    NA++SG+C+    A  L ++  M    +  D  T+S++L 
Sbjct: 197 AVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLP 256

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
            CA  +    G  VH Y+I+    L +DVF+ ++LI MY K G +  A +VF       +
Sbjct: 257 ICAQSNDVVGGVLVHLYVIKH--GLESDVFVSNALINMYSKFGRLQDAQRVF-------D 307

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
           G   +D+V W S++  Y +N      +  ++ ML  G +PD +  V++ S        ++
Sbjct: 308 GMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRI 367

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G     ++V    LE      + LV++  + G +D A  +  ++  R      V  W  L
Sbjct: 368 GRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSR-----DVISWNTL 422

Query: 376 LSA 378
           ++ 
Sbjct: 423 ITG 425



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 134/286 (46%), Gaps = 27/286 (9%)

Query: 98  SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANA 157
           S  +    KQ+ A +   G    V + + L+ LYA L  +  +   F  I  KN    N+
Sbjct: 60  SCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNS 119

Query: 158 LLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           ++S Y     +   ++ V  L+   G+  D +T   +L+AC  L+    G ++H ++++ 
Sbjct: 120 MVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLK- 175

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
                +DV++ +SLI +Y + G V  A +VF      ++  + +DV  W +M+  + +NG
Sbjct: 176 -MGFEHDVYVAASLIHLYSRFGAVEVAHKVF------VDMPV-RDVGSWNAMISGFCQNG 227

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH- 335
              E +++ + M     K D V   +++  C+ +  V  G+     +VH Y ++ G E  
Sbjct: 228 NVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGV-----LVHLYVIKHGLESD 282

Query: 336 ---YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
               + L+++  + G L  A ++ + M  R      +  W ++++A
Sbjct: 283 VFVSNALINMYSKFGRLQDAQRVFDGMEVR-----DLVSWNSIIAA 323


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 134/405 (33%), Positives = 223/405 (55%), Gaps = 28/405 (6%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAH- 111
           +N +I+ + +N     AL  F  M    G+  ++  +   + A   V+   F ++   H 
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC--VRSGAFSRKEAIHG 429

Query: 112 -VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            V K G     FV + L+D+Y++L  I  A  +F ++  ++ V  N +++GY  ++    
Sbjct: 430 FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 489

Query: 171 GLELVRLMPAL-----------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
            L L+  M  L            L  +  TL  +L +CA LSA   G+++HAY I+   N
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--N 547

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L  DV + S+L++MY KCG +  + +VF+           K+V+ W  ++  YG +G  +
Sbjct: 548 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQ-------KNVITWNVIIMAYGMHGNGQ 600

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E I L   M++ G KP+EV F++V +ACSH+G V  G+  F  M  DY +EP  +HY+C+
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL RAG + +A++L+N M+ R    +    W +LL A       E+G++AAQ  ++L+
Sbjct: 661 VDLLGRAGRIKEAYQLMN-MMPRDFNKAGA--WSSLLGASRIHNNLEIGEIAAQNLIQLE 717

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           P+    YV+L+N+Y+   +WD+  ++R  MKE+G++K+ GCSWIE
Sbjct: 718 PNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 155/313 (49%), Gaps = 21/313 (6%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW-LSSVFVGSALI 128
           A+ T+  M V GI  D YA  + L A   ++D   GKQ+ AHV K G+ + SV V + L+
Sbjct: 81  AVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLV 140

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
           +LY K         +FD I  +N V  N+L+S  C  + W   LE  R M    ++   F
Sbjct: 141 NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSF 200

Query: 189 TLSALLRACAGLSAAE---FGRQVHAYMIRKCCNLGN-DVFMQSSLIEMYGKCGLVTKAL 244
           TL +++ AC+ L   E    G+QVHAY +RK    G  + F+ ++L+ MYGK G +  + 
Sbjct: 201 TLVSVVTACSNLPMPEGLMMGKQVHAYGLRK----GELNSFIINTLVAMYGKLGKLASSK 256

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            +    G R       D+V W ++L    +N    E ++    M++ G +PDE    +V+
Sbjct: 257 VLLGSFGGR-------DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 309

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
            ACSH   ++ G E   + + +  L+      S LVD+ C   ++    ++ + M DR  
Sbjct: 310 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR-- 367

Query: 365 GSSSVSMWGALLS 377
               + +W A+++
Sbjct: 368 ---KIGLWNAMIA 377



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 169/343 (49%), Gaps = 28/343 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N V+S  C+N   L AL+    M + G+  D + + S L A + ++  R GK++
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
            A+  K+G L  + FVGSAL+D+Y     +     +FD +  +     NA+++GY + + 
Sbjct: 325 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 384

Query: 168 WAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
               L L + +  + GL  +  T++ ++ AC    A      +H +++++   L  D F+
Sbjct: 385 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR--GLDRDRFV 442

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           Q++L++MY + G +  A+++F     ++E   ++D+V W +M+  Y  + + ++ + L  
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFG----KME---DRDLVTWNTMITGYVFSEHHEDALLLLH 495

Query: 287 AM------LMNGT-----KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
            M      +  G      KP+ +  +T++ +C+    +  G E   + + +  L      
Sbjct: 496 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAV 554

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            S LVD+  + G L  + K+ +++  +     +V  W  ++ A
Sbjct: 555 GSALVDMYAKCGCLQMSRKVFDQIPQK-----NVITWNVIIMA 592



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 11/127 (8%)

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W  +L    R+   +E +  Y  M++ G KPD  AF  ++ A +    ++LG +      
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIH---A 121

Query: 325 HDYKLEPGPEHYS---CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
           H YK   G +  +    LV+L  + G+    +K+ + + +R   S     W +L+S+   
Sbjct: 122 HVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS-----WNSLISSLCS 176

Query: 382 CGKFELG 388
             K+E+ 
Sbjct: 177 FEKWEMA 183


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 198/341 (58%), Gaps = 26/341 (7%)

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG------- 170
           +  V   + +ID       + +A  +FDE+P +N V   +++SG  +   W+        
Sbjct: 115 VKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYER 174

Query: 171 ------GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L L  LM   G+     ++ ++L  C  L++ + GRQVH+ ++R   ++  D+
Sbjct: 175 KGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDI--DI 232

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           ++ S LI MY KCG +  A +VF+          +KD+V+W S++  Y ++G+ ++ +++
Sbjct: 233 YVSSVLITMYIKCGDLVTAKRVFDRFS-------SKDIVMWNSIIAGYAQHGFGEKALEV 285

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M  +   PDE+ F+ V+SACS+TG+VK G+E FE M   Y+++P  EHY+C+VDLL 
Sbjct: 286 FHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLG 345

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG+L++A  LI  M       +   +WGALL AC      +L ++AA+K L+L+P+N G
Sbjct: 346 RAGKLNEAMNLIENM----PVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAG 401

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            Y++LSNLY+    W ++ +LR+ M+ K L+K  GCSWIEV
Sbjct: 402 PYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEV 442



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 7/217 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           ++ +I  + R G  L AL  FS M   G+     ++ S L+   S+     G+QV + + 
Sbjct: 165 WSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLV 224

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           +S +   ++V S LI +Y K   +  A+ +FD    K+ V  N++++GY +       LE
Sbjct: 225 RSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALE 284

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           +   M +  +  D  T   +L AC+     + G ++   M  K   +       + ++++
Sbjct: 285 VFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSK-YQVDPKTEHYACMVDL 343

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            G+ G + +A+ +           +  D ++W ++LG
Sbjct: 344 LGRAGKLNEAMNLIE------NMPVEADAIVWGALLG 374



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 121/284 (42%), Gaps = 37/284 (13%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           + L+  Y +  +I +A  +FD++P +N V   A++ GY +  L      L   MP   + 
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNV- 87

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
               + + +L         +  RQ+   M  K      DV   +++I+     G + +A 
Sbjct: 88  ---VSWTVMLGGLIEDGRVDEARQLFDMMPVK------DVVASTNMIDGLCSEGRLIEAR 138

Query: 245 QVFNLAGHR--------LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           ++F+    R        + GE  KD   W++M+ +Y R G+  E + L+  M   G +P 
Sbjct: 139 EIFDEMPQRNVVAWTSMISGE--KDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPS 196

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
             + ++V+S C     +  G +    +V   + +      S L+ +  + G+L  A ++ 
Sbjct: 197 FPSVISVLSVCGSLASLDHGRQVHSQLVRS-QFDIDIYVSSVLITMYIKCGDLVTAKRVF 255

Query: 357 NEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALEL 398
           +        S  + MW ++++  A H  G         +KALE+
Sbjct: 256 DRF-----SSKDIVMWNSIIAGYAQHGFG---------EKALEV 285


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 224/432 (51%), Gaps = 49/432 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCSSLTASTSVKDARFGKQV 108
           N + +N ++S   R+G    A+   + MH  G+   D   +  +L+A   V     G+Q+
Sbjct: 120 NVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQL 179

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG------Y 162
             +  K+G  +   V +ALID+Y K     +   +FDE    +    NAL++G       
Sbjct: 180 HGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQV 239

Query: 163 CEA-KL---------------WAG-------------GLELVRLMPALGLDYDHFTLSAL 193
           CEA +L               W                +E  R M A G + +  T+  +
Sbjct: 240 CEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCV 299

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L A A ++A   GR  H + +RK     +DV++ S+L++MY KCG V  A  +F+     
Sbjct: 300 LPAFANVAALMHGRSAHCFALRK--GFLHDVYVSSALVDMYAKCGRVKDARIIFDTM--- 354

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
               ++++VV W +M+G Y   G     + ++ +ML    KPD V F  +++AC+  G  
Sbjct: 355 ----VSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLT 410

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  YF+ M ++Y + P  EHY+C+V LL RAG+LD+A+ LI++M           +WG
Sbjct: 411 EEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDM----PFEPDAYIWG 466

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           +LL +C   G  +L ++AA+K   L+P N G YV+LSN+YA   MWD + ++RE+MK+ G
Sbjct: 467 SLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVG 526

Query: 434 LKKDVGCSWIEV 445
           LKK+ GCSWIE+
Sbjct: 527 LKKEKGCSWIEI 538



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 133/336 (39%), Gaps = 52/336 (15%)

Query: 79  VHGIFLDTYALCSSLTA-----STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           V G+  D +   S L A     +T    A F    +   T  GW + V   +A  D    
Sbjct: 45  VSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGA 104

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL-DYDHFTLSA 192
             L+   E+  D     N +  N L+SG   +      +  +  M   GL   D   +S 
Sbjct: 105 WRLLE--EMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSC 162

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
            L A   +     G+Q+H Y ++  C    D  + ++LI+MYGKCG   + ++VF+ + H
Sbjct: 163 ALSAVGDVGLVSVGQQLHGYAVKAGCRA--DACVVTALIDMYGKCGQAAEVVRVFDESSH 220

Query: 253 -----------------------RLEGE-----INKDVVLWTSMLGVYGRNGYFKEVIKL 284
                                  RL  E     +  +VV WTS++    +NG   E ++ 
Sbjct: 221 MDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEF 280

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLV 340
           +  M   GT+P+ V    V+ A ++   +  G        H + L  G  H     S LV
Sbjct: 281 FREMQAQGTEPNSVTIPCVLPAFANVAALMHGRS-----AHCFALRKGFLHDVYVSSALV 335

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           D+  + G +  A  + + M+ R     +V  W A++
Sbjct: 336 DMYAKCGRVKDARIIFDTMVSR-----NVVSWNAMI 366


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 141/421 (33%), Positives = 218/421 (51%), Gaps = 38/421 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF---- 104
           R+ + +N +IS + +NG  L A + F    V  +F  T A+ S    +  + +AR     
Sbjct: 152 RDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWT-AMVSGYVQNGMLDEARRVFDG 210

Query: 105 ---GKQVQAHVTKSGWLS-----------------SVFVGSALIDLYAKLLLIHDAELMF 144
                 V  +   +G++                  +V   + +I  YA+   I  A   F
Sbjct: 211 MPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFF 270

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +P ++S+   A+++GY ++      L L   M   G   +  T ++ L  CA ++A E
Sbjct: 271 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 330

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G+QVH  +++    L +  ++ ++L+ MY KCG +  A  VF       EG   K+VV 
Sbjct: 331 LGKQVHGRVVK--AGLESGCYVGNALLVMYCKCGNIDDAYIVF-------EGIEEKEVVS 381

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +M+  Y R+G+ KE + L+E+M   G  PD+V  V V+SACSHTG V  G EYF  M 
Sbjct: 382 WNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMT 441

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            DY +    +HY+C++DLL RAG LD A  L+  M          + WGALL A    G 
Sbjct: 442 QDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM----PFEPDAATWGALLGASRIHGN 497

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            ELG+ AA+   E++P N G+YV+LSNLYA    W ++G++R  M+++G+KK  G SW+E
Sbjct: 498 TELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVE 557

Query: 445 V 445
           V
Sbjct: 558 V 558



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/414 (19%), Positives = 161/414 (38%), Gaps = 64/414 (15%)

Query: 30  CRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYAL 89
           C   +NL         +  R+ + +N ++S + +NG    A + F  M      +    +
Sbjct: 40  CVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS-ISWNGM 98

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
            ++   +  ++DAR     +   +K+ W   +   + ++  Y K   + DA  +FD +P 
Sbjct: 99  LAAYVQNGRIEDAR-----RLFESKADW--ELISWNCMMGGYVKRNRLVDARGIFDRMPE 151

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
           ++ V  N ++SGY +         L    P      D FT +A++         +  R+V
Sbjct: 152 RDEVSWNTMISGYAQNGELLEAQRLFEESPV----RDVFTWTAMVSGYVQNGMLDEARRV 207

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
              M  K      +    +++I  Y +C  + +A ++F       E    ++V  W +M+
Sbjct: 208 FDGMPEK------NSVSWNAIIAGYVQCKRMDQARELF-------EAMPCQNVSSWNTMI 254

Query: 270 GVYGRN-------------------------------GYFKEVIKLYEAMLMNGTKPDEV 298
             Y +N                               GY +E + L+  M  +G + +  
Sbjct: 255 TGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRS 314

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            F + +S C+    ++LG +    +V    LE G    + L+ + C+ G +D A+ +   
Sbjct: 315 TFTSTLSTCAEIAALELGKQVHGRVVK-AGLESGCYVGNALLVMYCKCGNIDDAYIVFE- 372

Query: 359 MLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
               G     V  W  +++  A H  GK  L    + K   + P +V +  +LS
Sbjct: 373 ----GIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLS 422



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 19/174 (10%)

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           +DVV W +ML  Y +NGY KE  ++++ M    +    +++  +++A    G+++     
Sbjct: 59  RDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS----ISWNGMLAAYVQNGRIEDARRL 114

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           FE    D++L      ++C++    +   L  A  + + M +R   S     W  ++S  
Sbjct: 115 FESKA-DWELIS----WNCMMGGYVKRNRLVDARGIFDRMPERDEVS-----WNTMISGY 164

Query: 380 HDCGKFELGKLAAQKALELDP-HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
              G+     L AQ+  E  P  +V  +  + + Y +  M DE  ++ + M EK
Sbjct: 165 AQNGEL----LEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEK 214


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 134/405 (33%), Positives = 223/405 (55%), Gaps = 28/405 (6%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAH- 111
           +N +I+ + +N     AL  F  M    G+  ++  +   + A   V+   F ++   H 
Sbjct: 285 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC--VRSGAFSRKEAIHG 342

Query: 112 -VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            V K G     FV + L+D+Y++L  I  A  +F ++  ++ V  N +++GY  ++    
Sbjct: 343 FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 402

Query: 171 GLELVRLMPAL-----------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
            L L+  M  L            L  +  TL  +L +CA LSA   G+++HAY I+   N
Sbjct: 403 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--N 460

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L  DV + S+L++MY KCG +  + +VF+           K+V+ W  ++  YG +G  +
Sbjct: 461 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQ-------KNVITWNVIIMAYGMHGNGQ 513

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E I L   M++ G KP+EV F++V +ACSH+G V  G+  F  M  DY +EP  +HY+C+
Sbjct: 514 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 573

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL RAG + +A++L+N M+ R    +    W +LL A       E+G++AAQ  ++L+
Sbjct: 574 VDLLGRAGRIKEAYQLMN-MMPRDFNKAGA--WSSLLGASRIHNNLEIGEIAAQNLIQLE 630

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           P+    YV+L+N+Y+   +WD+  ++R  MKE+G++K+ GCSWIE
Sbjct: 631 PNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 675



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 151/307 (49%), Gaps = 21/307 (6%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW-LSSVFVGSALIDLYAKLL 135
           M V GI  D YA  + L A   ++D   GKQ+ AHV K G+ + SV V + L++LY K  
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
                  +FD I  +N V  N+L+S  C  + W   LE  R M    ++   FTL +++ 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 196 ACAGLSAAE---FGRQVHAYMIRKCCNLGN-DVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           AC+ L   E    G+QVHAY +RK    G  + F+ ++L+ MYGK G +  +  +    G
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRK----GELNSFIINTLVAMYGKLGKLASSKVLLGSFG 176

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
            R       D+V W ++L    +N    E ++    M++ G +PDE    +V+ ACSH  
Sbjct: 177 GR-------DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLE 229

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            ++ G E   + + +  L+      S LVD+ C   ++    ++ + M DR      + +
Sbjct: 230 MLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR-----KIGL 284

Query: 372 WGALLSA 378
           W A+++ 
Sbjct: 285 WNAMIAG 291



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 169/343 (49%), Gaps = 28/343 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N V+S  C+N   L AL+    M + G+  D + + S L A + ++  R GK++
Sbjct: 178 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 237

Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
            A+  K+G L  + FVGSAL+D+Y     +     +FD +  +     NA+++GY + + 
Sbjct: 238 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 297

Query: 168 WAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
               L L + +  + GL  +  T++ ++ AC    A      +H +++++   L  D F+
Sbjct: 298 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR--GLDRDRFV 355

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           Q++L++MY + G +  A+++F     ++E   ++D+V W +M+  Y  + + ++ + L  
Sbjct: 356 QNTLMDMYSRLGKIDIAMRIFG----KME---DRDLVTWNTMITGYVFSEHHEDALLLLH 408

Query: 287 AM------LMNGT-----KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
            M      +  G      KP+ +  +T++ +C+    +  G E   + + +  L      
Sbjct: 409 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAV 467

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            S LVD+  + G L  + K+ +++  +     +V  W  ++ A
Sbjct: 468 GSALVDMYAKCGCLQMSRKVFDQIPQK-----NVITWNVIIMA 505


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 214/400 (53%), Gaps = 52/400 (13%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           LN R+ + +N +I+ +C++G    AL  F  M                     VK+A   
Sbjct: 354 LNKRDAICWNSMIAGYCQSGRMSEALNLFRQM--------------------PVKNA--- 390

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
                      W       + +I  YA+   +  A  +F+ + V+N +  N+L++G+ + 
Sbjct: 391 ---------VSW-------NTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQN 434

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L+   L+ + LM   G   D  T +  L +CA L+A + G+Q+H  +++      ND+F
Sbjct: 435 GLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILK--SGYINDLF 492

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++LI MY KCG V  A +VF      +EG    D++ W S++  Y  NGY  E    +
Sbjct: 493 VSNALIAMYAKCGGVQSAEKVF----KDIEG---VDLISWNSLISGYALNGYANEAFWAF 545

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M   GT PDEV F+ ++SACSH G    G++ F+ M+  + +EP  EHYSCLVDLL R
Sbjct: 546 EQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGR 605

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
            G L++A+ ++  M  + +      +WG+LL+AC      ELGK+AA + LEL+PHN   
Sbjct: 606 MGRLEEAFNIVRGMKVKANA----GLWGSLLAACRVHKNMELGKIAALRLLELEPHNASN 661

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y+ LSN++A+   W+++ +LR LM+E+   K  GCSWIEV
Sbjct: 662 YITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWIEV 701



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 40  TNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           T   + +  RN + +N +I+ F +NG  L ALK+   M   G   D      SL++  ++
Sbjct: 410 TEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANL 469

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
              + GKQ+   + KSG+++ +FV +ALI +YAK   +  AE +F +I   + +  N+L+
Sbjct: 470 AALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLI 529

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC--AGLS 201
           SGY               M + G   D  T   +L AC  AGL+
Sbjct: 530 SGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLT 573



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 131/317 (41%), Gaps = 51/317 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI---------FLDTYALCSSLTASTSV 99
           ++ + +N +++ + +NG    A+K F  M    +         F++   L S+      +
Sbjct: 171 KDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKI 230

Query: 100 KD-------------ARFGKQVQAH-VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
            D             AR GK V+A  +       +V   +A+I  Y + L I +A  +F 
Sbjct: 231 PDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFK 290

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
           E P K+ V    +++GY          E+   MP   +      +S L++      A++ 
Sbjct: 291 ETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQV 350

Query: 206 GRQVHAY-------MIRKCCNLGN-----DVFMQ---------SSLIEMYGKCGLVTKAL 244
             Q++         MI   C  G      ++F Q         +++I  Y + G + +A 
Sbjct: 351 FSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRAT 410

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           ++F   G R       +V+ W S++  + +NG + + +K    M   G KPD+  F   +
Sbjct: 411 EIFEAMGVR-------NVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSL 463

Query: 305 SACSHTGQVKLGIEYFE 321
           S+C++   +++G +  E
Sbjct: 464 SSCANLAALQVGKQLHE 480



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 115/272 (42%), Gaps = 66/272 (24%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           ++++ ++AK   + DA  +FD++  +N V  N +++GY    +     +L  LM     +
Sbjct: 52  NSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMA----E 107

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D+F+  AL+  C                                    Y + G++ KA 
Sbjct: 108 RDNFSW-ALMITC------------------------------------YTRKGMLEKAR 130

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           ++F L   +L      D   W +M+  Y + G F +  K++E M +     D V++ +++
Sbjct: 131 ELFELVPDKL------DTACWNAMIAGYAKKGRFDDAEKVFEKMPV----KDLVSYNSML 180

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           +  +  G++ L +++FE M      E     ++ +V       +L  AW+L  ++ D   
Sbjct: 181 AGYTQNGKMGLAMKFFERMA-----ERNVVSWNLMVAGFVNNCDLGSAWELFEKIPD--- 232

Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
             ++VS W  +L     CG    GK+   + L
Sbjct: 233 -PNAVS-WVTML-----CGFARHGKIVEARKL 257



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 24/186 (12%)

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           R       +VF Q+  I   GK G + +A +VF+         I+K+   + SM+ V+ +
Sbjct: 8   RSTLEQSKNVFNQNKKIIYLGKQGKIDEAKRVFS-------NVIHKNHATYNSMVTVFAK 60

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           NG   +  +L++ M    ++ + V++ T+I+   H   V+   + F+ M      E    
Sbjct: 61  NGRVSDARQLFDKM----SQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMA-----ERDNF 111

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
            ++ ++    R G L+KA +L   + D+       + W A+++     G+F+     A+K
Sbjct: 112 SWALMITCYTRKGMLEKARELFELVPDK----LDTACWNAMIAGYAKKGRFD----DAEK 163

Query: 395 ALELDP 400
             E  P
Sbjct: 164 VFEKMP 169


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 132/400 (33%), Positives = 216/400 (54%), Gaps = 16/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           R+ + +N +I+ + + G    A++ F  M    G   D  +L S L A   + D   G+ 
Sbjct: 186 RDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRW 245

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V+  V + G   + ++GSALI +YAK   +  A  +FD +  ++ +  NA++SGY +  +
Sbjct: 246 VEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGM 305

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               + L   M    +  +  TL+A+L ACA + A + G+Q+  Y  ++     +D+F+ 
Sbjct: 306 ADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQR--GFQHDIFVA 363

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+MY K G +  A +VF     + E         W +M+     +G  KE + L++ 
Sbjct: 364 TALIDMYAKSGSLDNAQRVFKDMPQKNEAS-------WNAMISALAAHGKAKEALSLFQH 416

Query: 288 MLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           M   G   +P+++ FV ++SAC H G V  G   F+ M   + L P  EHYSC+VDLL R
Sbjct: 417 MSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLAR 476

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L +AW LI +M ++      V++ GALL AC      ++G+   +  LE+DP N G 
Sbjct: 477 AGHLYEAWDLIRKMPEK---PDKVTL-GALLGACRSKKNVDIGERVMRMILEVDPSNSGN 532

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y++ S +YA   MW++  ++R LM++KG+ K  GCSWIEV
Sbjct: 533 YIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEV 572



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 144/288 (50%), Gaps = 31/288 (10%)

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S      +LI  YA+  L+  A  +FDEIP ++SV  N++++GY +A      +E+ R M
Sbjct: 155 SDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREM 214

Query: 179 PAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
               G + D  +L +LL AC  L   E GR V  +++ +   L +  ++ S+LI MY KC
Sbjct: 215 GRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNS--YIGSALISMYAKC 272

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G +  A ++F       +G   +DV+ W +++  Y +NG   E I L+  M  +    ++
Sbjct: 273 GELESARRIF-------DGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANK 325

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAW 353
           +    V+SAC+  G + LG +     + +Y  + G +H     + L+D+  ++G LD A 
Sbjct: 326 ITLTAVLSACATIGALDLGKQ-----IDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQ 380

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           ++  +M  +   S     W A++SA    GK       A++AL L  H
Sbjct: 381 RVFKDMPQKNEAS-----WNAMISALAAHGK-------AKEALSLFQH 416



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 132/297 (44%), Gaps = 48/297 (16%)

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            L L   M +L L  D+FT      +CA L++       H+ + +    L +D     SL
Sbjct: 106 ALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLA--LHSDPHTAHSL 163

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM-L 289
           I  Y +CGLV  A +VF+   HR       D V W SM+  Y + G  +E ++++  M  
Sbjct: 164 ITAYARCGLVASARKVFDEIPHR-------DSVSWNSMIAGYAKAGCAREAVEVFREMGR 216

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
            +G +PDE++ V+++ AC   G ++LG  + E  V +  +       S L+ +  + GEL
Sbjct: 217 RDGFEPDEMSLVSLLGACGELGDLELG-RWVEGFVVERGMTLNSYIGSALISMYAKCGEL 275

Query: 350 DKAWKLINEMLDRG------------------------HG------SSSVSMWGALLSAC 379
           + A ++ + M  R                         HG      +++     A+LSAC
Sbjct: 276 ESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSAC 335

Query: 380 HDCGKFELGK----LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
              G  +LGK     A+Q+  +   H++ +   L ++YAK    D   ++ + M +K
Sbjct: 336 ATIGALDLGKQIDEYASQRGFQ---HDIFVATALIDMYAKSGSLDNAQRVFKDMPQK 389


>gi|357128364|ref|XP_003565843.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Brachypodium distachyon]
          Length = 728

 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 141/423 (33%), Positives = 220/423 (52%), Gaps = 26/423 (6%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM----HVHGIFLDTYALC 90
           ++G     +  +  R+   +  VIS + + G    A++ F  M     V+    + Y   
Sbjct: 268 DVGRALAAVGRMGSRDVAAWTTVISSYVQTGRAKEAIEAFVAMVRNEAVNAASPNEYTYA 327

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL-LIHDAELMFDEIPV 149
           + + A         G+Q+   V + G+ S+  V ++L+ LYA++   +  A+ +F E   
Sbjct: 328 AVIAACADTSCVCLGEQLHGQVAQRGFASARSVANSLVTLYARVAGRLSAADAVFQESAA 387

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLM-----PALGLDYDHFTLSALLRACAGLSAAE 204
           K+ V  +A++SGY +  L      L   M     P      + FTL++LL  CA  +  +
Sbjct: 388 KDVVSWSAIISGYAQEGLAGEAFALFTEMRRHHCP----RPNEFTLASLLSVCATAATLD 443

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            GRQ+HA ++     L +   ++S+L++MYGK G ++ A  VF+            DVV 
Sbjct: 444 AGRQLHALVM--AAGLEHHAMIRSALVDMYGKSGSMSDADVVFS-------NRTKDDVVS 494

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           WT+M+  +  +G  K  ++L+E M + G KPD VAF+ V+SAC H G+V+LG+ Y   M 
Sbjct: 495 WTAMIVGHAEHGQSKRALELFEEMCLVGLKPDHVAFIGVLSACCHAGEVELGLRYLSAMS 554

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
             Y LEP  EHY C+VDLL RAG +++A +LI  M           +W +LL AC   G+
Sbjct: 555 KIYGLEPAKEHYGCVVDLLGRAGRINEAEELIGRM---AANERDGVVWTSLLRACAARGE 611

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            E GK AA +A+E +P   G +V ++NLYA    W E  Q R +MK+KG+ K VG S I 
Sbjct: 612 EETGKKAAARAMEAEPWGAGAHVAMANLYASKGQWCEAAQERHMMKQKGVVKGVGWSSIT 671

Query: 445 VTG 447
           V G
Sbjct: 672 VGG 674



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 123/281 (43%), Gaps = 27/281 (9%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGYCE 164
            + A   +S  LSSVFV +AL D YAK   +  A  +FDE+P   +N V    L++    
Sbjct: 135 SLHAFAVRSSALSSVFVATALADAYAKAGRLALALRVFDEMPAARRNVVSWTTLVAALSR 194

Query: 165 AKLWAGGLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           A      L     +  + G+  D    +A L ACA       GR+VHA     C  LG D
Sbjct: 195 AGRRHDALRAFAEMRASAGVACDSHAYAAALTACADAGMLSRGREVHAL----CAKLGLD 250

Query: 224 V--FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
              ++ ++L  +Y + G V +AL      G R       DV  WT+++  Y + G  KE 
Sbjct: 251 ATPYVANTLATLYARWGDVGRALAAVGRMGSR-------DVAAWTTVISSYVQTGRAKEA 303

Query: 282 IKLYEAML----MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
           I+ + AM+    +N   P+E  +  VI+AC+ T  V LG E     V            +
Sbjct: 304 IEAFVAMVRNEAVNAASPNEYTYAAVIAACADTSCVCLG-EQLHGQVAQRGFASARSVAN 362

Query: 338 CLVDLLCR-AGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            LV L  R AG L  A  +  E       +  V  W A++S
Sbjct: 363 SLVTLYARVAGRLSAADAVFQE-----SAAKDVVSWSAIIS 398



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 157/361 (43%), Gaps = 37/361 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQ 107
           RN + +  +++   R G    AL+ F+ M    G+  D++A  ++LTA         G++
Sbjct: 180 RNVVSWTTLVAALSRAGRRHDALRAFAEMRASAGVACDSHAYAAALTACADAGMLSRGRE 239

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V A   K G  ++ +V + L  LYA+   +  A      +  ++      ++S Y +   
Sbjct: 240 VHALCAKLGLDATPYVANTLATLYARWGDVGRALAAVGRMGSRDVAAWTTVISSYVQTGR 299

Query: 168 WAGGLE----LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
               +E    +VR         + +T +A++ ACA  S    G Q+H  + ++       
Sbjct: 300 AKEAIEAFVAMVRNEAVNAASPNEYTYAAVIAACADTSCVCLGEQLHGQVAQRGFASARS 359

Query: 224 VFMQSSLIEMYGK-CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           V   +SL+ +Y +  G ++ A  VF       +    KDVV W++++  Y + G   E  
Sbjct: 360 V--ANSLVTLYARVAGRLSAADAVF-------QESAAKDVVSWSAIISGYAQEGLAGEAF 410

Query: 283 KLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----S 337
            L+  M  +   +P+E    +++S C+    +  G +     +H   +  G EH+    S
Sbjct: 411 ALFTEMRRHHCPRPNEFTLASLLSVCATAATLDAGRQ-----LHALVMAAGLEHHAMIRS 465

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397
            LVD+  ++G +  A     +++        V  W A++      G  E G+  +++ALE
Sbjct: 466 ALVDMYGKSGSMSDA-----DVVFSNRTKDDVVSWTAMI-----VGHAEHGQ--SKRALE 513

Query: 398 L 398
           L
Sbjct: 514 L 514



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 118/260 (45%), Gaps = 32/260 (12%)

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-----VRLMPALGLD-YDHFTLSA 192
           DA  +FD  P ++    +ALL+G+  A  +AG + L          +  LD  D F LS 
Sbjct: 58  DAHSLFDGAPHRDEASYSALLAGHAAAGDFAGAMALFVRLRRTSSSSRPLDAADPFVLSL 117

Query: 193 LLRACAGLSAAEFG------RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
           + +A    SAA+ G        +HA+ +R      + VF+ ++L + Y K G +  AL+V
Sbjct: 118 VFKA----SAADPGLLLPHAASLHAFAVRSSAL--SSVFVATALADAYAKAGRLALALRV 171

Query: 247 FN-LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN-GTKPDEVAFVTVI 304
           F+ +   R      ++VV WT+++    R G   + ++ +  M  + G   D  A+   +
Sbjct: 172 FDEMPAAR------RNVVSWTTLVAALSRAGRRHDALRAFAEMRASAGVACDSHAYAAAL 225

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           +AC+  G +  G E    +     L+  P   + L  L  R G++ +A   +  M     
Sbjct: 226 TACADAGMLSRGREVHA-LCAKLGLDATPYVANTLATLYARWGDVGRALAAVGRM----- 279

Query: 365 GSSSVSMWGALLSACHDCGK 384
           GS  V+ W  ++S+    G+
Sbjct: 280 GSRDVAAWTTVISSYVQTGR 299


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 134/405 (33%), Positives = 223/405 (55%), Gaps = 28/405 (6%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAH- 111
           +N +I+ + +N     AL  F  M    G+  ++  +   + A   V+   F ++   H 
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC--VRSGAFSRKEAIHG 429

Query: 112 -VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            V K G     FV + L+D+Y++L  I  A  +F ++  ++ V  N +++GY  ++    
Sbjct: 430 FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 489

Query: 171 GLELVRLMPAL-----------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
            L L+  M  L            L  +  TL  +L +CA LSA   G+++HAY I+   N
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--N 547

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L  DV + S+L++MY KCG +  + +VF+           K+V+ W  ++  YG +G  +
Sbjct: 548 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQ-------KNVITWNVIIMAYGMHGNGQ 600

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E I L   M++ G KP+EV F++V +ACSH+G V  G+  F  M  DY +EP  +HY+C+
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL RAG + +A++L+N M+ R    +    W +LL A       E+G++AAQ  ++L+
Sbjct: 661 VDLLGRAGRIKEAYQLMN-MMPRDFNKAGA--WSSLLGASRIHNNLEIGEIAAQNLIQLE 717

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           P+    YV+L+N+Y+   +WD+  ++R  MKE+G++K+ GCSWIE
Sbjct: 718 PNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 155/313 (49%), Gaps = 21/313 (6%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW-LSSVFVGSALI 128
           A+ T+  M V GI  D YA  + L A   ++D   GKQ+ AHV K G+ + SV V + L+
Sbjct: 81  AVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLV 140

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
           +LY K         +FD I  +N V  N+L+S  C  + W   LE  R M    ++   F
Sbjct: 141 NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSF 200

Query: 189 TLSALLRACAGLSAAE---FGRQVHAYMIRKCCNLGN-DVFMQSSLIEMYGKCGLVTKAL 244
           TL +++ AC+ L   E    G+QVHAY +RK    G  + F+ ++L+ MYGK G +  + 
Sbjct: 201 TLVSVVTACSNLPMPEGLMMGKQVHAYGLRK----GELNSFIINTLVAMYGKLGKLASSK 256

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            +    G R       D+V W ++L    +N    E ++    M++ G +PDE    +V+
Sbjct: 257 VLLGSFGGR-------DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 309

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
            ACSH   ++ G E   + + +  L+      S LVD+ C   ++    ++ + M DR  
Sbjct: 310 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR-- 367

Query: 365 GSSSVSMWGALLS 377
               + +W A+++
Sbjct: 368 ---KIGLWNAMIA 377



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 169/343 (49%), Gaps = 28/343 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N V+S  C+N   L AL+    M + G+  D + + S L A + ++  R GK++
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
            A+  K+G L  + FVGSAL+D+Y     +     +FD +  +     NA+++GY + + 
Sbjct: 325 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 384

Query: 168 WAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
               L L + +  + GL  +  T++ ++ AC    A      +H +++++   L  D F+
Sbjct: 385 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR--GLDRDRFV 442

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           Q++L++MY + G +  A+++F     ++E   ++D+V W +M+  Y  + + ++ + L  
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFG----KME---DRDLVTWNTMITGYVFSEHHEDALLLLH 495

Query: 287 AM------LMNGT-----KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
            M      +  G      KP+ +  +T++ +C+    +  G E   + + +  L      
Sbjct: 496 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAV 554

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            S LVD+  + G L  + K+ +++  +     +V  W  ++ A
Sbjct: 555 GSALVDMYAKCGCLQMSRKVFDQIPQK-----NVITWNVIIMA 592



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 11/127 (8%)

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W  +L    R+   +E +  Y  M++ G KPD  AF  ++ A +    ++LG +      
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIH---A 121

Query: 325 HDYKLEPGPEHYS---CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
           H YK   G +  +    LV+L  + G+    +K+ + + +R   S     W +L+S+   
Sbjct: 122 HVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS-----WNSLISSLCS 176

Query: 382 CGKFELG 388
             K+E+ 
Sbjct: 177 FEKWEMA 183


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 134/405 (33%), Positives = 218/405 (53%), Gaps = 15/405 (3%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT--YALCSSLTASTSVK 100
             F+  R+ + +N +IS    +G     L  F  M   G+ LD     L S L ++ S +
Sbjct: 364 FDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSE 423

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
                +QV A   K G LS   V + LID Y K   +  A  +F E    + + +  +++
Sbjct: 424 AICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMT 483

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
              +       ++L   M   GL+ D F LS+LL AC  LSA E G+QVHA++I++    
Sbjct: 484 ALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKR--QF 541

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            +DVF  ++L+  Y KCG +  A   F+       G   + +V W++M+G   ++G+ K 
Sbjct: 542 TSDVFAGNALVYAYAKCGSIEDADMAFS-------GLPERGIVSWSAMIGGLAQHGHGKR 594

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            + L+  ML  G  P+ +   +V+SAC+H G V    +YFE M   + ++   EHY+C++
Sbjct: 595 ALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMI 654

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           D+L RAG+L+ A +L+N M  +    ++ ++WGALL A       ELG++AA+K   L+P
Sbjct: 655 DILGRAGKLEDAMELVNNMPFQ----ANAAVWGALLGASRVHRDPELGRMAAEKLFTLEP 710

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              G +V+L+N YA   MWDE+ ++R+LMK+  +KK+   SW+E+
Sbjct: 711 EKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEI 755



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 173/373 (46%), Gaps = 42/373 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +IS + +N     A+  F  M   G   + +     + A T  +D   G+QV
Sbjct: 168 RNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQV 227

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V ++G+   VF  +AL+D+Y+KL  I  A  +F+++P  + V  NA +SG       
Sbjct: 228 HGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHD 287

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL+  M + GL  + FTLS++L+ACAG  A   GRQ+H +M++   +   D F+  
Sbjct: 288 HRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADF--DEFVAV 345

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            L++MY K G +  A +VF+    R       D++LW +++     +G   EV+ L+  M
Sbjct: 346 GLVDMYAKHGFLDDARKVFDFMPRR-------DLILWNALISGCSHDGRHGEVLSLFHRM 398

Query: 289 LMNGTKPD--EVAFVTVISACS------HTGQV-----KLGI------------EYFEWM 323
              G   D       +V+ + +      HT QV     K+G+             Y++  
Sbjct: 399 RKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCG 458

Query: 324 VHDYKLEPGPEHYS-------CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             DY ++   E  S        ++  L +    + A KL  +ML +G    S  +  +LL
Sbjct: 459 QLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVL-SSLL 517

Query: 377 SACHDCGKFELGK 389
           +AC     +E GK
Sbjct: 518 NACTSLSAYEQGK 530



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 177/394 (44%), Gaps = 41/394 (10%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNV---- 56
           ++H+H  ++GLL      F + L+  Y+ CR       L +  + +    P P +V    
Sbjct: 25  HLHSHLLKSGLL----AGFSNHLLTLYSRCR-------LPSAARAVFDEIPDPCHVSWSS 73

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +++ +  NG P  AL  F  M   G+  + +AL   L  +    D RFG QV A    + 
Sbjct: 74  LVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAP---DVRFGAQVHALAVATR 130

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEI----PVKNSVCANALLSGYCEAKLWAGGL 172
            +  VFV +AL+ +Y    ++ +A  MFDE       +N+V  N ++S Y +       +
Sbjct: 131 LVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAI 190

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
            + R M   G   + F  S ++ AC G    E GRQVH  ++R       DVF  ++L++
Sbjct: 191 GVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVR--TGYEKDVFTANALVD 248

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY K G +  A  VF       E     DVV W + +     +G+    ++L   M  +G
Sbjct: 249 MYSKLGDIEMAATVF-------EKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSG 301

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVDLLCRAGELD 350
             P+     +V+ AC+  G   LG +   +MV   K     + +    LVD+  + G LD
Sbjct: 302 LVPNVFTLSSVLKACAGAGAFNLGRQIHGFMV---KAVADFDEFVAVGLVDMYAKHGFLD 358

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            A K+ + M  R      + +W AL+S C   G+
Sbjct: 359 DARKVFDFMPRR-----DLILWNALISGCSHDGR 387


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  224 bits (570), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 139/407 (34%), Positives = 219/407 (53%), Gaps = 21/407 (5%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKD 101
           LK +   N + +  +IS + + G    +L+ F  M +  +   D   LCS L +   +  
Sbjct: 220 LKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGA 279

Query: 102 ARFGKQVQAHVTKSGWLSSVF---VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
            R GK++  + TK    ++VF    G+AL+ +YAK   I DA  +F+ +   + V  NA+
Sbjct: 280 LRSGKEIHGYGTKME-TNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDKSDIVTWNAM 338

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           + G+ E  L    +E  R M  + +  D  T+S +L  C      ++G  +HAY +RK  
Sbjct: 339 ILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILPVCD----LQYGNPIHAY-VRKSI 393

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
            L + V + +++I MY KCG V  A  +F           NKDVV W +M+G +G +G+ 
Sbjct: 394 TLSSVVTVWNAVIHMYCKCGCVRSAYTIFC-------SMPNKDVVSWNTMIGGFGMHGHG 446

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           +  +KL + M+++G  P+   F +V+SACSH+G V  G   F  M  DY + P  EHYSC
Sbjct: 447 QAALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYSC 506

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +VD+L RAG+   A   I++M          S+WGALL+AC      + G+LAA++ + +
Sbjct: 507 IVDMLARAGQFADAVTFIHKM----PLEPDKSIWGALLAACRAYQNLDFGRLAAEQLIRM 562

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +P   G YV LSN+YA+   WD+ G++R+ ++ KGL K  G S IE 
Sbjct: 563 EPKCAGHYVTLSNIYARAGRWDDAGRVRKEIEGKGLVKPSGQSLIET 609



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 133/301 (44%), Gaps = 20/301 (6%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           LCS+L      K    GKQ+   +T SGW    F+ + LI +YA    +  A+ +FD++P
Sbjct: 4   LCSNL------KSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMP 57

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
             N     A+   Y    ++   ++    M    +  D++    +LRAC  L   E G  
Sbjct: 58  QPNVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIW 117

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +H  +I   C   +++ + +SLI+MY KCG    A  VF       E    +D+  W SM
Sbjct: 118 IHKDVI--VCGCESNLQVCNSLIDMYVKCGNARSARLVF-------EEMEERDLFSWNSM 168

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y  NG     ++L   M ++G +PD V + T++ A    G+         W V    
Sbjct: 169 ISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRFDEA-----WEVLKQI 223

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
            +P    ++ L+    + GE D + ++  +M+ R   S  +    ++L +C   G    G
Sbjct: 224 EQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSG 283

Query: 389 K 389
           K
Sbjct: 284 K 284



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 147/362 (40%), Gaps = 62/362 (17%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           ++L+  Y  C H  +   L +  K   P N   +  +   + R+G     ++ + FM   
Sbjct: 34  TKLIQMYADCDHLFSAQRLFD--KMPQP-NVYAWTAIFGFYLRHGMYDKCVQNYGFMKYS 90

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
            +  D Y     L A T +     G  +   V   G  S++ V ++LID+Y K      A
Sbjct: 91  DVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNARSA 150

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
            L+F+E+  ++    N+++SGY    L    +EL+  M   G + D  T + L+ A    
Sbjct: 151 RLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDA---- 206

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
              + GR   A+ + K     N +   ++LI  Y K G    +L+VF            +
Sbjct: 207 -YCQMGRFDEAWEVLKQIEQPN-IISWTTLISSYSKIGEHDMSLRVF------------Q 252

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           D+++              +EV+            PD     +V+ +C H G ++ G E  
Sbjct: 253 DMII--------------REVV-----------SPDLDCLCSVLVSCRHIGALRSGKE-- 285

Query: 321 EWMVHDY--KLEPGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
              +H Y  K+E     YS     L+ +  + G +  A  +  E++D+    S +  W A
Sbjct: 286 ---IHGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVF-ELMDK----SDIVTWNA 337

Query: 375 LL 376
           ++
Sbjct: 338 MI 339


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  224 bits (570), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 135/396 (34%), Positives = 213/396 (53%), Gaps = 17/396 (4%)

Query: 54  FNVVISDFCRNGSPLY---ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110
           FN +I  + R G+      AL  F  M    I        S L AS S+      KQ+  
Sbjct: 419 FNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHG 478

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            + K G    +F GSALID+Y+    + D+ L+FDE+ VK+ V  N++ +GY +      
Sbjct: 479 LMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEE 538

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            L L   +       D FT + ++ A   L++ + G++ H  ++++   L  + ++ ++L
Sbjct: 539 ALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR--GLECNPYITNAL 596

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           ++MY KCG    A + F+ A  R       DVV W S++  Y  +G  K+ +++ E M+ 
Sbjct: 597 LDMYAKCGSPEDAHKAFDSAASR-------DVVCWNSVISSYANHGEGKKALQMLEKMMS 649

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G +P+ + FV V+SACSH G V+ G++ FE M+  + +EP  EHY C+V LL RAG L+
Sbjct: 650 EGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLN 708

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           KA +LI +M  +     +  +W +LLS C   G  EL + AA+ A+  DP + G + MLS
Sbjct: 709 KARELIEKMPTK----PAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLS 764

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           N+YA   MW E  ++RE MK +G+ K+ G SWI + 
Sbjct: 765 NIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGIN 800



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 134/266 (50%), Gaps = 12/266 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  ++ + +  +IS   + G    +L+ F  +    +  D Y L + L+A + +     G
Sbjct: 209 LPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGG 268

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ AH+ + G      + + LID Y K   +  A  +F+ +P KN +    LLSGY + 
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQN 328

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    +EL   M   GL  D +  S++L +CA L A  FG QVHAY I+   NLGND +
Sbjct: 329 ALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIK--ANLGNDSY 386

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY---FKEVI 282
           + +SLI+MY KC  +T A +VF++           DVVL+ +M+  Y R G      E +
Sbjct: 387 VTNSLIDMYAKCDCLTDARKVFDIFAA-------ADVVLFNAMIEGYSRLGTQWELHEAL 439

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACS 308
            ++  M     +P  + FV+++ A +
Sbjct: 440 NIFRDMRFRLIRPSLLTFVSLLRASA 465



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 165/342 (48%), Gaps = 54/342 (15%)

Query: 55  NVVISDFCRNGSPLYALKTFSFM---------------HVHGIFLDTYA----------- 88
           N++I+ + R G  +YA K F  M               + HGI+ ++             
Sbjct: 83  NILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKD 142

Query: 89  -----LCSSLTASTSVKDARFGK----QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
                + SS   + S  D R G+    Q+Q+ + KSG+   V+VG+ LID Y K   I  
Sbjct: 143 SPNEYILSSFIQACSGLDGR-GRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDY 201

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A L+FD +P K++V    ++SG  +       L+L   +    +  D + LS +L AC+ 
Sbjct: 202 ARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSI 261

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L   E G+Q+HA+++R    L  D  + + LI+ Y KCG V  A ++FN       G  N
Sbjct: 262 LPFLEGGKQIHAHILRY--GLEMDASLMNVLIDSYVKCGRVIAAHKLFN-------GMPN 312

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           K+++ WT++L  Y +N   KE ++L+ +M   G KPD  A  +++++C+    +  G + 
Sbjct: 313 KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQ- 371

Query: 320 FEWMVHDYKLEP--GPEHY--SCLVDLLCRAGELDKAWKLIN 357
               VH Y ++   G + Y  + L+D+  +   L  A K+ +
Sbjct: 372 ----VHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFD 409



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 121/262 (46%), Gaps = 22/262 (8%)

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMP 179
            ++ + LI+LY++   +  A  +F+++P +N V  + ++S      ++   L + +    
Sbjct: 79  TYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWR 138

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGR----QVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
                 + + LS+ ++AC+GL     GR    Q+ +++++       DV++ + LI+ Y 
Sbjct: 139 TRKDSPNEYILSSFIQACSGLDGR--GRWMVFQLQSFLVKS--GFDRDVYVGTLLIDFYL 194

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           K G +  A  VF+           K  V WT+M+    + G     ++L+  ++ +   P
Sbjct: 195 KDGNIDYARLVFDALPE-------KSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVP 247

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           D     TV+SACS    ++ G +    ++  Y LE      + L+D   + G +  A KL
Sbjct: 248 DGYILSTVLSACSILPFLEGGKQIHAHILR-YGLEMDASLMNVLIDSYVKCGRVIAAHKL 306

Query: 356 INEMLDRGHGSSSVSMWGALLS 377
            N M ++     ++  W  LLS
Sbjct: 307 FNGMPNK-----NIISWTTLLS 323


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  224 bits (570), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 140/401 (34%), Positives = 217/401 (54%), Gaps = 17/401 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI--FLDTYALCSSLTASTSVKDARFGK 106
           R+ + +N +I+ F   G    AL TF  M    I    D + L S L A +S      GK
Sbjct: 171 RSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGK 230

Query: 107 QVQAHVTKSGW--LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           Q+   + +SG+   SS  +  +L+DLY K   +  A   FD+I  K  +  ++L+ GY +
Sbjct: 231 QIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQ 290

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
              +   + L + +  L    D F LS+++   A  +    G+Q+ A  ++    L   V
Sbjct: 291 EGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSV 350

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
              +S+++MY KCGLV +A + F  A  +L     KDV+ WT ++  YG++G  K+ +++
Sbjct: 351 L--NSVVDMYLKCGLVDEAEKCF--AEMQL-----KDVISWTVVITGYGKHGLGKKSVRI 401

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  ML +  +PDEV ++ V+SACSH+G +K G E F  ++  + ++P  EHY+C+VDLL 
Sbjct: 402 FYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLG 461

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG L +A  LI+ M  +     +V +W  LLS C   G  ELGK   +  L +D  N  
Sbjct: 462 RAGRLKEAKHLIDTMPIK----PNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPA 517

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            YVM+SNLY +   W+E G  REL   KGLKK+ G SW+E+
Sbjct: 518 NYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEI 558



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 173/359 (48%), Gaps = 22/359 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + ++ ++S    NG    +L  FS M   GI+ + +   ++L A   +     G Q+
Sbjct: 70  RNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQI 129

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G+   V VG++L+D+Y+K   I++AE +F  I  ++ +  NA+++G+  A   
Sbjct: 130 HGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYG 189

Query: 169 AGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           +  L+   +M    +    D FTL++LL+AC+       G+Q+H +++R   +  +   +
Sbjct: 190 SKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATI 249

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
             SL+++Y KCG +  A + F+           K ++ W+S++  Y + G F E + L++
Sbjct: 250 TGSLVDLYVKCGYLFSARKAFDQIKE-------KTMISWSSLILGYAQEGEFVEAMGLFK 302

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH--YSCLVDLLC 344
            +    ++ D  A  ++I   +    ++ G +     V   KL  G E    + +VD+  
Sbjct: 303 RLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAV---KLPSGLETSVLNSVVDMYL 359

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
           + G +D+A K   EM  +      V  W  +++     GK  LGK + +   E+  HN+
Sbjct: 360 KCGLVDEAEKCFAEMQLK-----DVISWTVVITG---YGKHGLGKKSVRIFYEMLRHNI 410



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 21/286 (7%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G QV  ++ KSG   ++   + LID+Y K      A  +FD +P +N V  +AL+SG+  
Sbjct: 25  GGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVL 84

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                G L L   M   G+  + FT S  L+AC  L+A E G Q+H +    C  +G ++
Sbjct: 85  NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF----CLKIGFEM 140

Query: 225 FMQ--SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            ++  +SL++MY KCG + +A +VF          +++ ++ W +M+  +   GY  + +
Sbjct: 141 MVEVGNSLVDMYSKCGRINEAEKVFRRI-------VDRSLISWNAMIAGFVHAGYGSKAL 193

Query: 283 KLYEAMLMNGTK--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHD-YKLEPGPEHYSCL 339
             +  M     K  PDE    +++ ACS TG +  G +   ++V   +           L
Sbjct: 194 DTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSL 253

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           VDL  + G L  A K  +++ ++     ++  W +L+      G+F
Sbjct: 254 VDLYVKCGYLFSARKAFDQIKEK-----TMISWSSLILGYAQEGEF 294



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 23/194 (11%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
            L ++LR C     ++ G QVH Y+++    L  ++   + LI+MY KC     A +VF+
Sbjct: 8   NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGL--NLITSNYLIDMYCKCREPLMAYKVFD 65

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               R       +VV W++++  +  NG  K  + L+  M   G  P+E  F T + AC 
Sbjct: 66  SMPER-------NVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACG 118

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGH 364
               ++ G++     +H + L+ G E      + LVD+  + G +++A K+   ++DR  
Sbjct: 119 LLNALEKGLQ-----IHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDR-- 171

Query: 365 GSSSVSMWGALLSA 378
              S+  W A+++ 
Sbjct: 172 ---SLISWNAMIAG 182



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 135/305 (44%), Gaps = 50/305 (16%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  +  + ++ +I  + + G  + A+  F  +      +D++AL S +         R G
Sbjct: 273 IKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQG 332

Query: 106 KQVQAHVTK--SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           KQ+QA   K  SG  +SV   ++++D+Y K  L+ +AE  F E+ +K+ +    +++GY 
Sbjct: 333 KQMQALAVKLPSGLETSVL--NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 390

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           +  L    + +   M    ++ D     A+L AC+           H+ MI++    G +
Sbjct: 391 KHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACS-----------HSGMIKE----GEE 435

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           +F  S L+E +G                      I   V  +  ++ + GR G  KE   
Sbjct: 436 LF--SKLLETHG----------------------IKPRVEHYACVVDLLGRAGRLKEAKH 471

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSCLVDL 342
           L + M +   KP+   + T++S C   G ++LG E  + ++  D K    P +Y  + +L
Sbjct: 472 LIDTMPI---KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAK---NPANYVMMSNL 525

Query: 343 LCRAG 347
             +AG
Sbjct: 526 YGQAG 530


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/407 (32%), Positives = 217/407 (53%), Gaps = 23/407 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+ + +NV++S +  NG    A   F  M + G+  D +   S + +   +     G
Sbjct: 239 VSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLG 298

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQV   + +  +   V V SAL+D+Y+K   I DA   FD + VKN V    ++ GY + 
Sbjct: 299 KQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQ- 357

Query: 166 KLWAGGLELVRLMPALGLDY---DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                G E +RL+  +   Y   D   L+++L +C  LSA     QVHAY++      G 
Sbjct: 358 --HGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVEN----GF 411

Query: 223 DVFMQ--SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
           + F+   ++L+  Y KCG +  A Q F+            D++ WTS++G Y  +G  KE
Sbjct: 412 EAFLSIANALVSAYSKCGSIGSAFQSFSSVAE-------PDIISWTSLMGAYAFHGLSKE 464

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            ++++E ML +  +PD+VAF+ V+SAC+H G V  G+ YF  M++ Y++ P  EHY+C++
Sbjct: 465 GVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCII 524

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RAG LD+A  L+  M       +     GA L AC       L + A++K   ++P
Sbjct: 525 DLLGRAGFLDEAINLLTSMPVEPRSDT----LGAFLGACKVHRNVGLARWASEKLFVMEP 580

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +    Y ++SN+YA    W ++ ++R+LM+E+   K  GCSW+E+ G
Sbjct: 581 NEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWMEIAG 627



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 194/388 (50%), Gaps = 36/388 (9%)

Query: 1   NVHAHQFETGLLLIC-LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVIS 59
            +HAH  + G    C L+  Q++++  Y  C+   ++  + + +     +N + +N +I 
Sbjct: 94  QLHAHVIKLG---NCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPL---KNVVSWNTLIC 147

Query: 60  DFCRNGSPLYALKTFSFMHVHGIFLDTYA-----LCSSLTASTSVKDARFGKQVQAHVTK 114
                G+  +AL    F +   + L+  A     L   L AS  + D    +Q+   + K
Sbjct: 148 GVVE-GNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILK 206

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           SG+ S+ FVGSAL+D YAK  L+ +A+  FDE+  ++ V  N ++S Y    +      +
Sbjct: 207 SGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGV 266

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            +LM   G+  D+FT ++++ +C  L +   G+QVH  +IR   +L  DV + S+L++MY
Sbjct: 267 FKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDL--DVLVASALVDMY 324

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            K   +  A + F       +G I K++V WT+M+  YG++G  KE ++L + M+   T 
Sbjct: 325 SKNENIEDARKAF-------DGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTY 377

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELD 350
           PDE+A  +++S+C +       ++     VH Y +E G E +    + LV    + G + 
Sbjct: 378 PDELALASILSSCGNLSATSEVVQ-----VHAYVVENGFEAFLSIANALVSAYSKCGSIG 432

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSA 378
            A++  + + +       +  W +L+ A
Sbjct: 433 SAFQSFSSVAE-----PDIISWTSLMGA 455



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 14/260 (5%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL----S 160
           GKQ+ AHV K G  + + + + ++ +Y K    +D   MFDE+P+KN V  N L+     
Sbjct: 92  GKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVE 151

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           G C+  L   G    R M    +  +  TL+ LLRA   L+     RQ+H ++++     
Sbjct: 152 GNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKS--GF 209

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            ++ F+ S+L++ Y K GLV +A   F+    R       D+VLW  M+  Y  NG   +
Sbjct: 210 DSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSR-------DLVLWNVMVSCYALNGVQGK 262

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
              +++ M + G K D   F ++I++C   G   LG +    ++     +      S LV
Sbjct: 263 AFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIR-LSFDLDVLVASALV 321

Query: 341 DLLCRAGELDKAWKLINEML 360
           D+  +   ++ A K  + M+
Sbjct: 322 DMYSKNENIEDARKAFDGMI 341


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/424 (32%), Positives = 219/424 (51%), Gaps = 19/424 (4%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-G 81
           L+  Y  C   ++ G+       +  RN + +  +IS   R    LY      F  +   
Sbjct: 164 LVTAYFEC---ESPGSAERAFHGMAERNVITWTAMISGMARE--ELYKDSIVLFQQMRRT 218

Query: 82  IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE 141
           +  ++    SSL A       + G+Q+   V K+G  + + V S L+DLY+K  L+ D  
Sbjct: 219 VDANSATYSSSLLACAGSLALKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTL 278

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            +F      + +    +L G+ +  L     EL   M   G+  D   +SA+L A    +
Sbjct: 279 SVFRLCRQPDEISLTVILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASA 338

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
               G+Q+HA +I+KC   G ++++ + LI MY KCG + +++QVFN          +K+
Sbjct: 339 PFALGKQIHALVIKKC--FGRNIYVCNGLINMYSKCGELEESIQVFNETP-------SKN 389

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
            + W S++  + R+G   EV KL+E+M  +G  P +V F++++  CSH G  K G+E   
Sbjct: 390 SISWNSIIAAFARHGQGSEVFKLFESMKADGANPTDVTFLSLLHGCSHVGSAKKGLEILN 449

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            M  +Y + P  EHY+C+VD+L RAG L+ A   I +    G    S  +W AL+ AC  
Sbjct: 450 SMSSEYGILPRVEHYACVVDMLGRAGLLEDARSFIED----GPFKDSALLWQALMGACSF 505

Query: 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCS 441
            G  E+GK AA+K L LDP +   YV+LSN+Y+    WD+  ++ + M+E GL+KD G S
Sbjct: 506 RGNSEIGKYAAEKLLHLDPDSPAAYVLLSNIYSSEGRWDDRARVMKSMREMGLRKDTGKS 565

Query: 442 WIEV 445
           WIE+
Sbjct: 566 WIEL 569



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 143/306 (46%), Gaps = 22/306 (7%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V   V   G+ + V VG+AL+  Y +      AE  F  +  +N +   A++SG    +L
Sbjct: 145 VHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFHGMAERNVITWTAMISGMAREEL 204

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +   + L + M    +D +  T S+ L ACAG  A + G+Q+H  +++    L  D+ ++
Sbjct: 205 YKDSIVLFQQMRRT-VDANSATYSSSLLACAGSLALKEGQQIHGLVVK--AGLETDLHVE 261

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S L+++Y KCGL+   L VF L   R   EI+  V+L       + +NG  ++  +L+  
Sbjct: 262 SGLMDLYSKCGLMEDTLSVFRLC--RQPDEISLTVILVG-----FAQNGLEEKAFELFAE 314

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVDLLCR 345
           M   G   D      V+ A   +    LG +    ++   K   G   Y C  L+++  +
Sbjct: 315 MAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVI---KKCFGRNIYVCNGLINMYSK 371

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNV 403
            GEL+++ ++ NE   +    +S+S W ++++A   H  G        + KA   +P +V
Sbjct: 372 CGELEESIQVFNETPSK----NSIS-WNSIIAAFARHGQGSEVFKLFESMKADGANPTDV 426

Query: 404 GIYVML 409
               +L
Sbjct: 427 TFLSLL 432



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 13/225 (5%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           +AL+ +YA+     +A  +FDE+ +++SV  N+L+         +    ++R   + G  
Sbjct: 59  NALVSMYARCGRHAEAARVFDEMRIRDSVSWNSLIGSSGAEDALSQFRRMLRSSSSPGGG 118

Query: 185 Y--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
              DH T + +L ACA  ++      VH  ++ +      +V + ++L+  Y +C     
Sbjct: 119 VSCDHATFTTVLSACAREASLPTCAMVHGLVVSR--GFEAEVSVGNALVTAYFECESPGS 176

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A + F+       G   ++V+ WT+M+    R   +K+ I L++ M       +   + +
Sbjct: 177 AERAFH-------GMAERNVITWTAMISGMAREELYKDSIVLFQQMRRT-VDANSATYSS 228

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
            + AC+ +  +K G +    +V    LE      S L+DL  + G
Sbjct: 229 SLLACAGSLALKEG-QQIHGLVVKAGLETDLHVESGLMDLYSKCG 272


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 211/399 (52%), Gaps = 13/399 (3%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           N  +   +N V++    +G    A++    M   G+  D+    S +     ++D   G 
Sbjct: 188 NDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGL 247

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           QV A + K G    VFVGS L+D++ K   +  A  +FD +  +N V   +L++ Y +  
Sbjct: 248 QVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNG 307

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
            +   L L+  M   G   + FT + LL A AG++A   G  +HA + +    + N V +
Sbjct: 308 EFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEK--LGIKNRVIV 365

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++LI MY KCG +  +  VF           N+D++ W +M+  Y ++G  K+ + L++
Sbjct: 366 GNALINMYSKCGCIDSSYDVF-------FDMRNRDIITWNAMICGYSQHGLGKQALLLFQ 418

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML  G  P+ V FV V+SAC+H   V  G  Y   ++  +K+EPG EHY+C+V +LCRA
Sbjct: 419 DMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRA 478

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G L++A   +     +      V  W  LL+AC+    + LG   A+  L++DP ++G Y
Sbjct: 479 GMLEEAENFMRTTQVKW----DVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTY 534

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            +LSN+YAK   WD +  +R++M+E+ +KK+ G SWIE+
Sbjct: 535 TLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEI 573



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 137/301 (45%), Gaps = 26/301 (8%)

Query: 98  SVKDARFGKQVQAHVTKSGWLSS--------VFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           + K+  FGK +   +      S+        +   ++LI+LY K   +  A  +FDE+ +
Sbjct: 24  NTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSL 83

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
           ++ V  N L+ GY  +      ++L + M +     + +  + +L ACA       G Q 
Sbjct: 84  RSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQC 143

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H ++ +    L    F++SSL+ MY KC  V  ALQV       ++ +   D   + S+L
Sbjct: 144 HGFLFK--FGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDND--NDAFCYNSVL 199

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
                +G   E +++   M+  G   D V +V+V+  C     + LG++     VH   L
Sbjct: 200 NALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQ-----VHAQLL 254

Query: 330 EPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           + G        S LVD+  + G++  A K+ + + +R     +V +W +L++A    G+F
Sbjct: 255 KGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNR-----NVVVWTSLMTAYLQNGEF 309

Query: 386 E 386
           E
Sbjct: 310 E 310



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  RN + +  +++ + +NG     L   S M   G   + +     L A   +   R G
Sbjct: 288 LQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHG 347

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
             + A V K G  + V VG+ALI++Y+K   I  +  +F ++  ++ +  NA++ GY + 
Sbjct: 348 DLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQH 407

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
            L    L L + M + G   +H T   +L ACA L+    G
Sbjct: 408 GLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEG 448



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 13/127 (10%)

Query: 198 AGLSAAEFGRQVHAYM-IRKCCNLGN-----DVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           A      FG+ +H  + IR   +  +     ++   +SLI +Y KC  +  A  +F+   
Sbjct: 23  ANTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMS 82

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
            R        VV +  ++G Y  +G   EV+KL++ M+ +  +P+E  F TV+SAC+H+G
Sbjct: 83  LR-------SVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSG 135

Query: 312 QVKLGIE 318
           +V  G++
Sbjct: 136 RVFEGMQ 142


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/401 (34%), Positives = 218/401 (54%), Gaps = 16/401 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++  + ++     AL+ +  M V G+ +D + L S LTA T+V+D   G Q 
Sbjct: 203 RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQF 262

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLL-LIHDAELMFDEIPVKNSVCANALLSGYC-EAK 166
            A + KSG+  +  VGS LIDLY+K    + D   +FDEI   + V  N ++SGY     
Sbjct: 263 HAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYED 322

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L    LE  R +  +G   D  +L  ++ AC+ +S+   GRQVH   + K     N + +
Sbjct: 323 LSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLAL-KLDIPSNRISV 381

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++LI MY KCG +  A  +F+            + V + SM+  Y ++G   + + L++
Sbjct: 382 NNALIAMYSKCGNLRDAKTLFDTMP-------EHNTVSYNSMIAGYAQHGMGFQSLHLFQ 434

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML     P  + F++V++AC+HTG+V+ G  YF  M   + +EP   H+SC++DLL RA
Sbjct: 435 RMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRA 494

Query: 347 GELDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           G+L +A +LI  +  D G        W ALL AC   G  EL   AA + L+LDP N   
Sbjct: 495 GKLSEAERLIETIPFDPG-----FFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAP 549

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           YVML+N+Y+      +   +R+LM+++G+KK  GCSWIEV 
Sbjct: 550 YVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVN 590



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 169/376 (44%), Gaps = 48/376 (12%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           + + +N +I+ + R G    A + F  M    + +D + L   +TA     +    +Q+ 
Sbjct: 104 DSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGI--NVGLIRQLH 161

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV-KNSVCANALLSGYCEAKLW 168
           A    +G  S V VG+ALI  Y+K   + +A  +F  +   ++ V  N+++  Y + +  
Sbjct: 162 ALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREG 221

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
           +  LEL   M   GL  D FTL+++L A   +     G Q HA +I+   +  + V   S
Sbjct: 222 SKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHV--GS 279

Query: 229 SLIEMYGKC-GLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYG-RNGYFKEVIKLY 285
            LI++Y KC G +    +VF+        EI N D+VLW +M+  Y        E ++ +
Sbjct: 280 GLIDLYSKCGGCMLDCRKVFD--------EISNPDLVLWNTMISGYSLYEDLSDEALECF 331

Query: 286 EAMLMNGTKPDEVAFVTVISACS-----------HTGQVKLGIEYFEWMVH--------- 325
             +   G +PD+ + V VISACS           H   +KL I      V+         
Sbjct: 332 RQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSK 391

Query: 326 -----DYK--LEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
                D K   +  PEH    Y+ ++    + G   ++  L   ML+     ++++ + +
Sbjct: 392 CGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNIT-FIS 450

Query: 375 LLSACHDCGKFELGKL 390
           +L+AC   G+ E GK+
Sbjct: 451 VLAACAHTGRVEDGKI 466



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 122/266 (45%), Gaps = 27/266 (10%)

Query: 63  RNGSPLYALKTFSFM----HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           R G  L+AL   SF+    ++   FL  Y+ C  L+A+  V D                 
Sbjct: 25  RTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHD------------- 71

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
            +VF  + LI  YAK   +  A  +FDE+P  +SV  N L++ Y          +L   M
Sbjct: 72  CNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEM 131

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
               LD D FTLS ++ AC G++     RQ+HA  +     L + V + ++LI  Y K G
Sbjct: 132 REAFLDMDGFTLSGIITAC-GINVG-LIRQLHALSV--VTGLDSYVSVGNALITSYSKNG 187

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            + +A ++F+          ++D V W SM+  Y ++    + ++LY  M + G   D  
Sbjct: 188 FLKEARRIFHWLSE------DRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIF 241

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMV 324
              +V++A ++   +  G+++   ++
Sbjct: 242 TLASVLTAFTNVQDLLGGLQFHAKLI 267


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/446 (29%), Positives = 236/446 (52%), Gaps = 17/446 (3%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H H   +   ++     +++L+  Y+ C        +        P  P+   + I  +
Sbjct: 92  LHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIG-Y 150

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS--GWLS 119
            RNG    AL  +  M    +    +A   +L A + + +A  G+ + A + K   G   
Sbjct: 151 SRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEAD 210

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
            V V +AL+ LY ++    +   +F+E+P +N V  N L++G+         L   R+M 
Sbjct: 211 QV-VNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQ 269

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
             G+ +   TL+ +L  CA ++A   G+++H  +++   N   DV + +SL++MY KCG 
Sbjct: 270 REGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNA--DVPLLNSLMDMYAKCGE 327

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           +    +VF+    R+    +KD+  W +ML  +  NG   E + L++ M+  G +P+ + 
Sbjct: 328 IGYCEKVFD----RMH---SKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGIT 380

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           FV ++S CSH+G    G   F  ++ D+ ++P  EHY+CLVD+L R+G+ D+A  +   +
Sbjct: 381 FVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENI 440

Query: 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419
             R  GS    +WG+LL++C   G   L ++ A++  E++P+N G YVMLSN+YA   MW
Sbjct: 441 PMRPSGS----IWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMW 496

Query: 420 DEIGQLRELMKEKGLKKDVGCSWIEV 445
           +++ ++RE+M   G+KKD GCSWI++
Sbjct: 497 EDVKRVREMMALTGMKKDAGCSWIQI 522



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           ++S  L AC    + E GR++H +++R    +  +  +++ LI +Y  CG V +A +VF 
Sbjct: 72  SISLFLHACISRRSLEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVF- 130

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
               +++ E   +  +W +M   Y RNG+  E + LY  ML    KP   AF   + ACS
Sbjct: 131 ----QIDDEKPPEEPVWVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACS 186

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
                 +G      +V     E      + L+ L    G  D+  K+  EM  R     +
Sbjct: 187 DLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQR-----N 241

Query: 369 VSMWGALLSA 378
           V  W  L++ 
Sbjct: 242 VVSWNTLIAG 251


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 214/397 (53%), Gaps = 11/397 (2%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +   G+   AL+ F  M    I  D   + + ++A         G+QV
Sbjct: 229 KDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQV 288

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +   G+ S++ + ++L+DLY+K   +  A  +F+ +  K+ +  N L+ GY    L+
Sbjct: 289 HSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLY 348

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + M   G   +  T+ ++L ACA L A + GR +H Y+ ++  +  N   +++
Sbjct: 349 KEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRT 408

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A QVFN   H       K +  W +M+  +  +G       ++  M
Sbjct: 409 SLIDMYAKCGDIEAAHQVFNSILH-------KSLSSWNAMIFGFAMHGRADAAFDIFSRM 461

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G +PD++ FV ++SACS +G + LG   F  M  DYK+ P  EHY C++DLL  +G 
Sbjct: 462 RKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGL 521

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
             +A ++IN M     G     +W +LL AC   G  ELG+  AQ  ++++P N G YV+
Sbjct: 522 FKEAEEMINNMEMEPDG----VIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVL 577

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W+E+ ++R L+ +KG+KK  GCS IE+
Sbjct: 578 LSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEI 614



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 208/448 (46%), Gaps = 60/448 (13%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA   +TGL      +  S+L+       H   L    +  + +   N L +N +    
Sbjct: 52  IHAQMIKTGLHNTNYAL--SKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 109

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +  P+ ALK +  M   G+  ++Y     L +    K  + G+Q+  HV K G+   +
Sbjct: 110 ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDL 169

Query: 122 FVGSALIDLY-------------------------------AKLLLIHDAELMFDEIPVK 150
           FV ++LI +Y                               A    I  A+ +FDEIPVK
Sbjct: 170 FVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVK 229

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V  NA++SGY E   +   LEL + M    +  D  T+  ++ ACA   + E GRQVH
Sbjct: 230 DVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVH 289

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           +++       G+++ + +SL+++Y KCG +  A  +F       EG + KDV+ W +++G
Sbjct: 290 SWIDDH--GFGSNLKIVNSLMDLYSKCGELETACGLF-------EGLLYKDVISWNTLIG 340

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH---DY 327
            Y     +KE + L++ ML +G +P++V  ++++ AC+H G + +G     W +H   D 
Sbjct: 341 GYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIG----RW-IHVYIDK 395

Query: 328 KLEPGPEHYS---CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL--SACHDC 382
           +L+      S    L+D+  + G+++ A ++ N +L +     S+S W A++   A H  
Sbjct: 396 RLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHK-----SLSSWNAMIFGFAMHGR 450

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLS 410
                   +  + + ++P ++    +LS
Sbjct: 451 ADAAFDIFSRMRKIGIEPDDITFVGLLS 478


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 148/436 (33%), Positives = 228/436 (52%), Gaps = 62/436 (14%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + FNV+I  + + G  L A++ F  M   G+  D + +   L +   + + +FGK V   
Sbjct: 130 VSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVH-- 187

Query: 112 VTKSGWL--------SSVFVGSALIDLY-------------------------------A 132
               GW+        S++ +G+AL+D+Y                               A
Sbjct: 188 ----GWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCA 243

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
           K+  +  A L F ++P ++ V  N+L++GY     +A   EL+  M    +  D  T+ +
Sbjct: 244 KVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMIS 303

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           L+ A     A + GR  H ++IR    L  D F+ S+LI+MY KCG + +A +VF     
Sbjct: 304 LVSAATESGALDQGRWAHGWVIRMQIKL--DAFLGSALIDMYCKCGSIERASRVFK---- 357

Query: 253 RLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
               EINK DV +WT+M+     +GY  + ++L+  M      PD+V FV+V+SACSH+G
Sbjct: 358 ----EINKKDVTVWTTMITGLAFHGYGSKALELFSEM-QEDVSPDDVTFVSVLSACSHSG 412

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            V  GI+ F  M  DY +EPG EHY CLVDLL R+G L +A  +I++M  +     S S+
Sbjct: 413 LVDQGIKVFSSMT-DYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMK----PSRSI 467

Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           WGA+L+AC   G  EL ++A+++ L LDP   G Y +LSN+YA    W    ++RE M+ 
Sbjct: 468 WGAMLNACQAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMES 527

Query: 432 KGLKKDVGCSWIEVTG 447
           +G+KK  GCS + V G
Sbjct: 528 RGVKKTAGCSSVVVDG 543



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 189/417 (45%), Gaps = 50/417 (11%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPR-NPLPFNVVISDFCRNGSPLYALKTFSFMHV---HGI 82
           ++   H  NL           P  N   +N +IS F    S L  +++F   +V    G 
Sbjct: 7   FSAVSHPDNLDLAITLFNHFTPNPNLFIYNTLISAF----SSLKKIESFYLYNVLLSSGE 62

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             D   L   L A   +      KQ+      +G  S  ++ + LI +Y +  L+  A  
Sbjct: 63  CPDKQTLLYLLQAVNFISQV---KQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQ 119

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL---MPALGLDYDHFTLSALLRACAG 199
           +F+++P  + V  N ++ GY +      GLE +RL   M  LGL+ D FT+  LL +C  
Sbjct: 120 VFEKMPSPDIVSFNVMIVGYAKKGF---GLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQ 176

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN----------- 248
           L   +FG+ VH +M R+   + +++ + ++L++MY KC  V  AL+ F            
Sbjct: 177 LGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWN 236

Query: 249 --LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
             +AG    GE+            +D+V W S++  Y   G F  V +L   M+M    P
Sbjct: 237 MIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIP 296

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           D V  ++++SA + +G +  G     W++   +++      S L+D+ C+ G +++A ++
Sbjct: 297 DTVTMISLVSAATESGALDQGRWAHGWVIR-MQIKLDAFLGSALIDMYCKCGSIERASRV 355

Query: 356 INEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
             E+         V++W  +++  A H  G   L +L ++   ++ P +V    +LS
Sbjct: 356 FKEI-----NKKDVTVWTTMITGLAFHGYGSKAL-ELFSEMQEDVSPDDVTFVSVLS 406


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 233/446 (52%), Gaps = 18/446 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHA    TGL  +  +   + L+  Y  C   +    + + +K    R+ + + V+I  +
Sbjct: 285 VHAQCMNTGL--VDDVRVATALIRMYMGCGSIEGARRVFDKMKV---RDVVSWTVMIRGY 339

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             N +   A   F+ M   GI  D       + A  S  D    +++ + V ++G+ + +
Sbjct: 340 AENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDL 399

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            V +AL+ +YAK   I DA  +FD +  ++ V  +A++  Y E        E   LM   
Sbjct: 400 LVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRN 459

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            ++ D  T   LL AC  L A + G +++   I+   +L + + + ++LI M  K G + 
Sbjct: 460 NVEPDVVTYINLLNACGHLGALDLGMEIYTQAIK--ADLVSHIPVGNALINMNVKHGSIE 517

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           +A  +F       E  + +DVV W  M+G Y  +G  +E + L++ ML    +P+ V FV
Sbjct: 518 RARYIF-------ENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFV 570

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            V+SACS  G V+ G  +F +++    + P  E Y C+VDLL RAGELD+A  LIN M  
Sbjct: 571 GVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPL 630

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +     + S+W  LL+AC   G  ++ + AA++ L  +P++  +YV LS++YA   MW+ 
Sbjct: 631 K----PNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWEN 686

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
           + ++R++M+ +G++K+ GC+WIEV G
Sbjct: 687 VAKVRKVMESRGVRKEQGCTWIEVEG 712



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 151/317 (47%), Gaps = 10/317 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R+   FNV+I  + ++G    A + F  M   G   +  +  S L   ++ +   +G
Sbjct: 223 LYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWG 282

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V A    +G +  V V +ALI +Y     I  A  +FD++ V++ V    ++ GY E 
Sbjct: 283 KAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAEN 342

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                   L   M   G+  D  T   ++ ACA  +     R++H+ ++R     G D+ 
Sbjct: 343 SNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR--AGFGTDLL 400

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L+ MY KCG +  A QVF+    R       DVV W++M+G Y  NG  +E  + +
Sbjct: 401 VDTALVHMYAKCGAIKDARQVFDAMSRR-------DVVSWSAMIGAYVENGCGEEAFETF 453

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M  N  +PD V ++ +++AC H G + LG+E +   +    +   P   + L+++  +
Sbjct: 454 HLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVG-NALINMNVK 512

Query: 346 AGELDKAWKLINEMLDR 362
            G +++A  +   M+ R
Sbjct: 513 HGSIERARYIFENMVQR 529



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 165/374 (44%), Gaps = 36/374 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +  + +N +I+ + + G    A   F  M    +          L A +S    + GK+ 
Sbjct: 125 KTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEF 184

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V K G++S   +G+AL+ +Y K   +  A  +FD +  ++    N ++ GY ++   
Sbjct: 185 HAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDG 244

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFM 226
               +L   M   G   +  +  ++L  C+   A  +G+ VHA    +C N G  +DV +
Sbjct: 245 EKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHA----QCMNTGLVDDVRV 300

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++LI MY  CG +  A +VF+    R       DVV WT M+  Y  N   ++   L+ 
Sbjct: 301 ATALIRMYMGCGSIEGARRVFDKMKVR-------DVVSWTVMIRGYAENSNIEDAFGLFA 353

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-----DYKLEPGPEHYSCLVD 341
            M   G +PD + ++ +I+AC+ +  + L  E    +V      D  ++      + LV 
Sbjct: 354 TMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVD------TALVH 407

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGK--FELGKLAAQKALE 397
           +  + G +  A ++ + M  R      V  W A++ A   + CG+  FE   L  +  +E
Sbjct: 408 MYAKCGAIKDARQVFDAMSRR-----DVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVE 462

Query: 398 LDPHNVGIYVMLSN 411
            D   V  Y+ L N
Sbjct: 463 PD---VVTYINLLN 473



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 108/210 (51%), Gaps = 9/210 (4%)

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
           ++DA  GKQV+ H+ +SG   +++  + LI L++    + +A   FD +  K  V  NA+
Sbjct: 74  LRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAI 133

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           ++GY +         L R M    ++    T   +L AC+  +  + G++ HA +I+   
Sbjct: 134 IAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIK--V 191

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
              +D  + ++L+ MY K G +  A QVF       +G   +DV  +  M+G Y ++G  
Sbjct: 192 GFVSDFRIGTALVSMYVKGGSMDGARQVF-------DGLYKRDVSTFNVMIGGYAKSGDG 244

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           ++  +L+  M   G KP+ ++F++++  CS
Sbjct: 245 EKAFQLFYRMQQEGFKPNRISFLSILDGCS 274



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 20/193 (10%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           D  T   L + C  L  A  G+QV  ++I+    L  +++  ++LI+++  CG + +A Q
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQL--NIYELNTLIKLHSICGNMLEARQ 117

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
            F+          NK VV W +++  Y + G+ KE   L+  M+    +P  + F+ V+ 
Sbjct: 118 TFDSVE-------NKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLD 170

Query: 306 ACSHTGQVKLGIEYFEWM-----VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           ACS    +KLG E+   +     V D+++       + LV +  + G +D A ++ + + 
Sbjct: 171 ACSSPAGLKLGKEFHAQVIKVGFVSDFRIG------TALVSMYVKGGSMDGARQVFDGLY 224

Query: 361 DRGHGSSSVSMWG 373
            R   + +V + G
Sbjct: 225 KRDVSTFNVMIGG 237


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 145/445 (32%), Positives = 227/445 (51%), Gaps = 45/445 (10%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +L       K ++ ++ + +N +IS F +   P  AL+ F  M    +  ++  +   L+
Sbjct: 176 DLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLS 235

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A     D  FG+ V +++ + G    + + +A++D+Y K   + DA+ +FDE+P ++   
Sbjct: 236 ACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFS 295

Query: 155 ANALLSGYCEAKLWAGGLELVRLMP----------------------ALGL--------- 183
              +L GY +   +     +   MP                      AL +         
Sbjct: 296 WTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKI 355

Query: 184 -DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
              D  TL + L ACA L A + G  +H Y+ R+   L  +  + SSL++MY KCG + K
Sbjct: 356 AKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVL--NCHLISSLVDMYAKCGSLEK 413

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           AL+VF     R       DV +W++M+   G +G  K  I L+  M     KP+ V F  
Sbjct: 414 ALEVFYSVEER-------DVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTN 466

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           V+ ACSH G V  G  +F  M   Y + P  +HY+C+VD+L RAG L++A +LINEM   
Sbjct: 467 VLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEM--- 523

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422
              + S S+WGALL AC      ELG+LA+ + L+L+P N G  V+LSN+YAK   W+++
Sbjct: 524 -STTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKV 582

Query: 423 GQLRELMKEKGLKKDVGCSWIEVTG 447
            +LR+LM++  LKK+ GCS IE  G
Sbjct: 583 SELRKLMRDTELKKEPGCSSIEANG 607



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 191/446 (42%), Gaps = 71/446 (15%)

Query: 2   VHAHQFETGLLLICLI---IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVI 58
           VHA    TGL         +F +  +  ++T  + +NL         +   N   +N +I
Sbjct: 44  VHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNL------FDQIPQPNLYTWNTLI 97

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT----------ASTSVKDARFGKQV 108
             +  +  P       SF+    IFLD    C  L           A++ +K +R G  V
Sbjct: 98  RAYASSSDPFQ-----SFV----IFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAV 148

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K  +   +++ ++L+  Y     +  AE +F  I  K+ V  N+++S + +    
Sbjct: 149 HGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCP 208

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL   M    +  +  T+  +L ACA     EFGR V +Y+ RK   +  D+ + +
Sbjct: 209 EDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKV--DLTLCN 266

Query: 229 SLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEIN-----------KDVVL 264
           ++++MY KCG V  A ++F+             L G+   G+ +           K++  
Sbjct: 267 AMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAA 326

Query: 265 WTSMLGVYGRNGYFKEVIKLY-EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
           W  ++  Y +NG  KE + ++ E  L    KPDEV  V+ +SAC+  G + LG     W 
Sbjct: 327 WNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLG----GW- 381

Query: 324 VHDYKLEPGP----EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           +H Y    G        S LVD+  + G L+KA ++   + +R      V +W A+++  
Sbjct: 382 IHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEER-----DVYVWSAMIAGL 436

Query: 380 --HDCGKFELGKLAAQKALELDPHNV 403
             H  GK  +      +  ++ P++V
Sbjct: 437 GMHGRGKAAIDLFFEMQEAKVKPNSV 462


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/442 (31%), Positives = 229/442 (51%), Gaps = 47/442 (10%)

Query: 33  KKN-LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           K+N LG        +  R+ + +N +IS + ++G    A + F    V  +F  T A+  
Sbjct: 200 KRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWT-AMVY 258

Query: 92  SLTASTSVKDARF-------GKQVQAHVTKSGW-----------------LSSVFVGSAL 127
           +      + +AR         +++  +V  +G+                   ++   + +
Sbjct: 259 AYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIM 318

Query: 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
           I  Y +   +  A  +FD +P ++SV   A+++GY +  L+   + ++  M   G   + 
Sbjct: 319 ISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNR 378

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIR----KCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
            T    L ACA ++A E G+QVH  ++R    K C +GN      +L+ MY KCG + +A
Sbjct: 379 STFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGN------ALVGMYCKCGCIDEA 432

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
             VF       +G  +KD+V W +ML  Y R+G+ ++ + ++E+M+  G KPDE+  V V
Sbjct: 433 YDVF-------QGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGV 485

Query: 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
           +SACSHTG    G EYF  M  DY + P  +HY+C++DLL RAG L++A  LI  M    
Sbjct: 486 LSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMP--- 542

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423
                 + WGALL A    G  ELG+ AA+   +++PHN G+YV+LSNLYA    W ++ 
Sbjct: 543 -FEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVS 601

Query: 424 QLRELMKEKGLKKDVGCSWIEV 445
           ++R  M++ G++K  G SW+EV
Sbjct: 602 KMRLKMRQIGVQKTPGYSWVEV 623



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 125/288 (43%), Gaps = 42/288 (14%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
            +F  + ++  YA+   + DA ++FD +P K+ V  NA+LSGY  +       ++   MP
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP 153

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC-CNLG----------------- 221
                  +  L+A +R+     A         + +  C C +G                 
Sbjct: 154 HKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQ 213

Query: 222 ---NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
               D+   +++I  Y + G +++A ++F       E    +DV  WT+M+  Y ++G  
Sbjct: 214 IPVRDLISWNTMISGYAQDGDLSQARRLF-------EESPVRDVFTWTAMVYAYVQDGML 266

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
            E  ++++ M     +  E+++  +I+  +   ++ +G E FE M       P    ++ 
Sbjct: 267 DEARRVFDEM----PQKREMSYNVMIAGYAQYKRMDMGRELFEEMPF-----PNIGSWNI 317

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           ++   C+ G+L +A  L + M  R     SVS W A+++     G +E
Sbjct: 318 MISGYCQNGDLAQARNLFDMMPQR----DSVS-WAAIIAGYAQNGLYE 360



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 128/317 (40%), Gaps = 68/317 (21%)

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD +P++NSV  NA++SGY     ++   +L   MP   L    F+ + +L   A    
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDL----FSWNLMLTGYARNRR 110

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
               R +   M  K      DV   ++++  Y + G V +A  VF+   H       K+ 
Sbjct: 111 LRDARMLFDSMPEK------DVVSWNAMLSGYVRSGHVDEARDVFDRMPH-------KNS 157

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAM----------LMNG-----------------TKP 295
           + W  +L  Y R+G  +E  +L+E+           LM G                    
Sbjct: 158 ISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVR 217

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWM-VHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           D +++ T+IS  +  G +      FE   V D         ++ +V    + G LD+A +
Sbjct: 218 DLISWNTMISGYAQDGDLSQARRLFEESPVRDVFT------WTAMVYAYVQDGMLDEARR 271

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGK--FELGKLAAQKALELDPHNVGIY-VMLSN 411
           + +EM  +   S +V + G       D G+  FE          E+   N+G + +M+S 
Sbjct: 272 VFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFE----------EMPFPNIGSWNIMISG 321

Query: 412 LYAKFCMWDEIGQLREL 428
               +C   ++ Q R L
Sbjct: 322 ----YCQNGDLAQARNL 334


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 228/431 (52%), Gaps = 52/431 (12%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +IS +  +G  L AL+ F  M++ GI  D +   S L+A  +      GKQV A+
Sbjct: 257 VAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAY 316

Query: 112 VTKSGWLSSV----FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC---- 163
           + ++    S+     V +AL  LY K   + +A  +F+++PVK+ V  NA+LSGY     
Sbjct: 317 ILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGR 376

Query: 164 --EAK------------LWA-------------GGLELVRLMPALGLDYDHFTLSALLRA 196
             EAK             W                L+L   M + G +   +  +  + A
Sbjct: 377 IDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIA 436

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS--SLIEMYGKCGLVTKALQVFNLAGHRL 254
           CA L+A   GRQ+HA ++R    LG D  + +  +LI MY KCG+V  A  +F    +  
Sbjct: 437 CAWLAALMHGRQLHAQLVR----LGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYL- 491

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                 D V W +M+   G++G+  + ++L+E ML     PD + F+TV+S CSH G V+
Sbjct: 492 ------DSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVE 545

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G  YF+ M   Y + PG +HY+ ++DLLCRAG+  +A  +I  M           +W A
Sbjct: 546 EGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETM----PVEPGPPIWEA 601

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL+ C   G  +LG  AA++  EL P + G YV+LSN+YA    WD++ ++R+LM++KG+
Sbjct: 602 LLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGV 661

Query: 435 KKDVGCSWIEV 445
           KK+ GCSWIEV
Sbjct: 662 KKEPGCSWIEV 672



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 146/330 (44%), Gaps = 67/330 (20%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA-STSVKDARF 104
           L  R+ + +N +I+ +  N     A++ F  +  +G   D +   S L A +  V+D + 
Sbjct: 109 LGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQ 168

Query: 105 GKQVQAHVTKSG---------WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS--- 152
            +Q+   V KSG          L SVFV  A   L +   L+  A  +FDE+  ++    
Sbjct: 169 CQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSW 228

Query: 153 ----------------------------VCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
                                       V  NA++SGY     +   LE+ R M  LG+ 
Sbjct: 229 TTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQ 288

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIR--KCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +D FT +++L ACA       G+QVHAY++R     +L   + + ++L  +Y KCG V +
Sbjct: 289 WDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDE 348

Query: 243 ALQVFN-------------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYF 278
           A QVFN             L+G+   G I+           ++++ WT M+    +NG+ 
Sbjct: 349 ARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFG 408

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           +E +KL+  M   G +P + AF   I AC+
Sbjct: 409 EESLKLFNRMKSEGFEPCDYAFAGAIIACA 438



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 181/422 (42%), Gaps = 98/422 (23%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP---------------- 148
            + V AH+  SG+    ++ + LID+Y K   +  A  +FDEI                 
Sbjct: 34  ARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSS 93

Query: 149 -----------------VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191
                            ++++VC NA+++GY       G +EL R +   G   D+FT +
Sbjct: 94  AGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFT 153

Query: 192 ALLRACAGLSAAEFG-RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG---------LVT 241
           ++L A A +   E   +Q+H  +++        V   ++L+ ++ KC          L+ 
Sbjct: 154 SVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVL--NALLSVFVKCASSPLVSSSSLMA 211

Query: 242 KALQVFN-------------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGY 277
            A ++F+             +AG+   GE++           K VV W +M+  Y  +G+
Sbjct: 212 AARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGF 271

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--KLEPGP-- 333
           F E ++++  M + G + DE  + +V+SAC++ G    G +     VH Y  + EP P  
Sbjct: 272 FLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQ-----VHAYILRTEPRPSL 326

Query: 334 ----EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
                  + L  L  + G++D+A ++ N+M  +      +  W A+LS   + G+ +  K
Sbjct: 327 DFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-----DLVSWNAILSGYVNAGRIDEAK 381

Query: 390 LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK--------DVGCS 441
              +   E+   N+  + ++ +  A+    +E  +L   MK +G +          + C+
Sbjct: 382 SFFE---EMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACA 438

Query: 442 WI 443
           W+
Sbjct: 439 WL 440



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 133/335 (39%), Gaps = 53/335 (15%)

Query: 35  NLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           N G +     F      RN L + V+IS   +NG    +LK F+ M   G     YA   
Sbjct: 373 NAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAG 432

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           ++ A   +     G+Q+ A + + G+ SS+  G+ALI +YAK  ++  A  +F  +P  +
Sbjct: 433 AIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLD 492

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           SV  NA+++   +    A  LEL  LM    +  D  T   +L  C+     E G   H 
Sbjct: 493 SVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEG---HR 549

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           Y                S+  +YG C                  GE +     +  M+ +
Sbjct: 550 YF--------------KSMSGLYGIC-----------------PGEDH-----YARMIDL 573

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
             R G F E   + E M     +P    +  +++ C   G + LGI+  E +      E 
Sbjct: 574 LCRAGKFSEAKDMIETM---PVEPGPPIWEALLAGCRIHGNMDLGIQAAERL-----FEL 625

Query: 332 GPEH---YSCLVDLLCRAGELDKAWKLINEMLDRG 363
            P+H   Y  L ++    G  D   K+   M D+G
Sbjct: 626 MPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKG 660


>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
 gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
 gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 148/478 (30%), Positives = 234/478 (48%), Gaps = 50/478 (10%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA   +TGL  I   +  SR++     C    ++         +N +NP  +N +I  
Sbjct: 43  QIHASLIKTGL--ISDTVTASRVLA--FCCASPSDMNYAYLVFTRINHKNPFVWNTIIRG 98

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALC--SSLTASTSVKDARFGKQVQAHVTKSGWL 118
           F R+  P  A+  F  M      +    L   S   A   +  AR G+Q+   V K G  
Sbjct: 99  FSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLE 158

Query: 119 SSVFVGSALIDLY-------------------------------AKLLLIHDAELMFDEI 147
              F+ + ++ +Y                               AK  LI  A+ +FDE+
Sbjct: 159 DDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEM 218

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           P +N V  N+++SG+     +   L++ R M    +  D FT+ +LL ACA L A+E GR
Sbjct: 219 PQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGR 278

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
            +H Y++R    L + V   ++LI+MY KCG + + L VF  A         K +  W S
Sbjct: 279 WIHEYIVRNRFELNSIVV--TALIDMYCKCGCIEEGLNVFECAP-------KKQLSCWNS 329

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           M+     NG+ +  + L+  +  +G +PD V+F+ V++AC+H+G+V    E+F  M   Y
Sbjct: 330 MILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKY 389

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
            +EP  +HY+ +V++L  AG L++A  LI  M           +W +LLSAC   G  E+
Sbjct: 390 MIEPSIKHYTLMVNVLGGAGLLEEAEALIKNM----PVEEDTVIWSSLLSACRKIGNVEM 445

Query: 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            K AA+   +LDP     YV+LSN YA + +++E  + R LMKE+ ++K+VGCS IEV
Sbjct: 446 AKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEV 503



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 125/290 (43%), Gaps = 44/290 (15%)

Query: 97  TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY-AKLLLIHDAELMFDEIPVKNSVCA 155
           T     R  KQ+ A + K+G +S     S ++    A    ++ A L+F  I  KN    
Sbjct: 33  TQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVW 92

Query: 156 NALLSGYCEAKLWAGGLELV--RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
           N ++ G+  +      + +    L  +  +     T  ++ +A   L  A  GRQ+H  +
Sbjct: 93  NTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMV 152

Query: 214 IRKCCNLGNDVFMQSSLIEMY-------------------------------GKCGLVTK 242
           I++   L +D F++++++ MY                                KCGL+ +
Sbjct: 153 IKE--GLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQ 210

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A  +F+    R       + V W SM+  + RNG FK+ + ++  M     KPD    V+
Sbjct: 211 AQNLFDEMPQR-------NGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVS 263

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
           +++AC++ G  + G    E++V + + E      + L+D+ C+ G +++ 
Sbjct: 264 LLNACAYLGASEQGRWIHEYIVRN-RFELNSIVVTALIDMYCKCGCIEEG 312


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/444 (31%), Positives = 237/444 (53%), Gaps = 19/444 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHA+    GL     I   + L+  Y  C   K +G    C+   + ++ + +  +I+ +
Sbjct: 371 VHAYAIRNGLDSNMQI--GNTLVDMYAKCCCVKYMGHAFECM---HEKDLISWTTIIAGY 425

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +N   L A+  F  + V G+ +D   + S L A + +K   F +++  +V K   L+ +
Sbjct: 426 AQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRD-LADI 484

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            + +A++++Y ++  I  A   F+ I  K+ V   ++++      L    LEL   +   
Sbjct: 485 MLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQT 544

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
            +  D   + + L A A LS+ + G+++H ++IRK   L   +   SSL++MY  CG V 
Sbjct: 545 NIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPI--ASSLVDMYACCGTVE 602

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            + ++F+    R       D++LWTSM+   G +G   + I L++ M      PD + F+
Sbjct: 603 NSRKMFHSVKQR-------DLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFL 655

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
            ++ ACSH+G +  G  +FE M + Y+LEP PEHY+C+VDLL R+  L++A+  +  M  
Sbjct: 656 ALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPI 715

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +     S  +W ALL ACH     ELG+LAA++ L+ D  N G Y ++SN++A    W++
Sbjct: 716 K----PSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWND 771

Query: 422 IGQLRELMKEKGLKKDVGCSWIEV 445
           + ++R  MK  GLKK+ GCSWIEV
Sbjct: 772 VEEVRLRMKGNGLKKNPGCSWIEV 795



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 179/363 (49%), Gaps = 18/363 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++S   +N     AL  F  M   G   D  ++ + + AS    +   GK+V
Sbjct: 312 RDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEV 371

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A+  ++G  S++ +G+ L+D+YAK   +      F+ +  K+ +    +++GY + +  
Sbjct: 372 HAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFH 431

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + L R +   G+D D   + ++LRAC+GL +  F R++H Y+ ++  +L  D+ +Q+
Sbjct: 432 LEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKR--DLA-DIMLQN 488

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +++ +YG+ G +  A + F       E   +KD+V WTSM+     NG   E ++L+ ++
Sbjct: 489 AIVNVYGEVGHIDYARRAF-------ESIRSKDIVSWTSMITCCVHNGLPVEALELFYSL 541

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                +PD +A ++ +SA ++   +K G E   +++       GP   S LVD+    G 
Sbjct: 542 KQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPI-ASSLVDMYACCGT 600

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCGKFELGKLAAQKALELDPHNVGIY 406
           ++ + K+ + +  R      + +W ++++A   H CG   +          + P ++   
Sbjct: 601 VENSRKMFHSVKQR-----DLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFL 655

Query: 407 VML 409
            +L
Sbjct: 656 ALL 658



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 155/317 (48%), Gaps = 25/317 (7%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           ++L+L Y  C      G+L + +K    ++ R    +N ++  F  +G  L A++ +  M
Sbjct: 83  TKLVLMYGKC------GSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDM 136

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
            V G+ +D     S L A  ++ ++R G ++     K G+   VFV +ALI +Y K   +
Sbjct: 137 RVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDL 196

Query: 138 HDAELMFDEIPV--KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
             A ++FD I +  +++V  N+++S +         L L R M  +G+  + +T  A L+
Sbjct: 197 GGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQ 256

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
                S  + G  +H  +++   N   DV++ ++LI MY KCG +  A +VF       E
Sbjct: 257 GVEDPSFVKLGMGIHGAVLKS--NHFADVYVANALIAMYAKCGRMEDAGRVF-------E 307

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
             + +D V W ++L    +N  + + +  +  M  +G KPD+V+ + +I+A   +G +  
Sbjct: 308 SMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLK 367

Query: 316 GIEYFEWMVHDYKLEPG 332
           G E     VH Y +  G
Sbjct: 368 GKE-----VHAYAIRNG 379



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 164/370 (44%), Gaps = 24/370 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +   + + +N +IS     G+ L AL  F  M   G+  +TY   ++L         + G
Sbjct: 208 MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
             +   V KS   + V+V +ALI +YAK   + DA  +F+ +  ++ V  N LLSG  + 
Sbjct: 268 MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQN 327

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +L++  L   R M   G   D  ++  L+ A         G++VHAY IR    L +++ 
Sbjct: 328 ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRN--GLDSNMQ 385

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L++MY KC  V          GH  E    KD++ WT+++  Y +N +  E I L+
Sbjct: 386 IGNTLVDMYAKCCCV-------KYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLF 438

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---YSCLVDL 342
             + + G   D +   +V+ ACS      L    F   +H Y  +         + +V++
Sbjct: 439 RKVQVKGMDVDPMMIGSVLRACS-----GLKSRNFIREIHGYVFKRDLADIMLQNAIVNV 493

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC-HDCGKFE-LGKLAAQKALELDP 400
               G +D A +    +      S  +  W ++++ C H+    E L    + K   + P
Sbjct: 494 YGEVGHIDYARRAFESIR-----SKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQP 548

Query: 401 HNVGIYVMLS 410
            ++ I   LS
Sbjct: 549 DSIAIISALS 558



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 150/338 (44%), Gaps = 30/338 (8%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT---YALCSSLTASTSVKDARFGK 106
            PLP   +  +    G+   A ++ + +  H +   +   +A    L    + K    G+
Sbjct: 7   TPLPLKPISVNTLNKGTLKPAFQSLTLLSTHPLATPSRLEHAHSLLLDLCVAAKALPQGQ 66

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+ A + KS    S F+ + L+ +Y K   + DA  +FDE+  +     NAL+  +  + 
Sbjct: 67  QLHALLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSG 124

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
            +   +EL + M  LG+  D  T  ++L+AC  L  +  G ++H   ++  C  G  VF+
Sbjct: 125 KYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVK--CGYGEFVFV 182

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++LI MYGKCG +  A  +F+  G  +E E   D V W S++  +   G   E + L+ 
Sbjct: 183 CNALIAMYGKCGDLGGARVLFD--GIMMEKE---DTVSWNSIISAHVAEGNCLEALSLFR 237

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS------CLV 340
            M   G   +   FV  +        VKLG+      +H   L+    H++       L+
Sbjct: 238 RMQEVGVASNTYTFVAALQGVEDPSFVKLGMG-----IHGAVLK--SNHFADVYVANALI 290

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            +  + G ++ A ++   ML R + S     W  LLS 
Sbjct: 291 AMYAKCGRMEDAGRVFESMLCRDYVS-----WNTLLSG 323


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/415 (32%), Positives = 217/415 (52%), Gaps = 17/415 (4%)

Query: 35  NLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
            LGT+ +  K  +    RN + + V++  + +        + F  M   G+ LD   L  
Sbjct: 156 QLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLIC 215

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
            + A  +V   + GK V     +  ++  S ++ +++ID+Y K  L+ +A  +F+    +
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N V    L+SG+ + +      +L R M    +  +  TL+A+L +C+ L +   G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            YMIR    +  D    +S I+MY +CG +  A  VF++   R       +V+ W+SM+ 
Sbjct: 336 GYMIRNGIEM--DAVNFTSFIDMYARCGNIQMARTVFDMMPER-------NVISWSSMIN 386

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            +G NG F+E +  +  M      P+ V FV+++SACSH+G VK G + FE M  DY + 
Sbjct: 387 AFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVV 446

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
           P  EHY+C+VDLL RAGE+ +A   I+ M  +   S+    WGALLSAC    + +L   
Sbjct: 447 PEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASA----WGALLSACRIHKEVDLAGE 502

Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            A+K L ++P    +YV+LSN+YA   MW+ +  +R  M  KG +K VG S  EV
Sbjct: 503 IAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYRKHVGQSATEV 557



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 180/366 (49%), Gaps = 18/366 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYA--LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           RN   +N ++S + ++ +  Y+  L  ++ M  H   +D++ L  ++ A   +     G 
Sbjct: 70  RNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGI 129

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +     K+G     +V  +L+++YA+L  +  A+ +FDEIPV+NSV    L+ GY +  
Sbjct: 130 LIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYS 189

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                  L  LM   GL  D  TL  L++AC  + A + G+ VH   IR+     +D ++
Sbjct: 190 KDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSD-YL 248

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           Q+S+I+MY KC L+  A ++F       E  ++++VV+WT+++  + +     E   L+ 
Sbjct: 249 QASIIDMYVKCRLLDNARKLF-------ETSVDRNVVMWTTLISGFAKCERAVEAFDLFR 301

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML     P++     ++ +CS  G ++ G     +M+ +  +E    +++  +D+  R 
Sbjct: 302 QMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRN-GIEMDAVNFTSFIDMYARC 360

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVG 404
           G +  A  + + M +R     +V  W ++++A    G FE  L      K+  + P++V 
Sbjct: 361 GNIQMARTVFDMMPER-----NVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVT 415

Query: 405 IYVMLS 410
              +LS
Sbjct: 416 FVSLLS 421



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 130/297 (43%), Gaps = 20/297 (6%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--K 150
           LT  +  K     +QV A V   G+   V +GS+L + Y +   +  A   F+ IP   +
Sbjct: 11  LTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKR 70

Query: 151 NSVCANALLSGYCEAKL--WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
           N    N +LSGY ++K   ++  L L   M       D F L   ++AC GL   E G  
Sbjct: 71  NRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGIL 130

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTS 267
           +H   ++    L  D ++  SL+EMY + G +  A +VF+        EI  ++ VLW  
Sbjct: 131 IHGLAMKN--GLDKDDYVAPSLVEMYAQLGTMESAQKVFD--------EIPVRNSVLWGV 180

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           ++  Y +     EV +L+  M   G   D +  + ++ AC +    K+G       +   
Sbjct: 181 LMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRS 240

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            ++      + ++D+  +   LD A KL    +DR     +V MW  L+S    C +
Sbjct: 241 FIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR-----NVVMWTTLISGFAKCER 292


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 224/433 (51%), Gaps = 47/433 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I+ + +NG    AL  F  M   G   D   L S ++A   +   R G+QV
Sbjct: 211 RNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQV 270

Query: 109 QAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK- 166
              + KS  +   + + +AL+D+YAK     +A+ +FD + +++ V   ++++GY ++  
Sbjct: 271 HTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSAN 330

Query: 167 -----------------LW----------AGGLELVRLMPALGLDY---DHFTLSALLRA 196
                             W          +   E +RL   L  +     H+T   +L A
Sbjct: 331 VGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNA 390

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGN----DVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           CA L+  + G+Q H +++++     +    DVF+ +SL++MY K G ++   +VF     
Sbjct: 391 CANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVF----- 445

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
             E    +D V W +M+  Y +NG  K+ + L+E ML +  +PD V  + V+SAC H+G 
Sbjct: 446 --ERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGL 503

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           VK G  YF+ M  D+ + P  +HY+C++DLL RAG L    K + E+++         +W
Sbjct: 504 VKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHL----KEVEELIENMPMEPDAVLW 559

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
            +LL AC      ++G+ AA K  ELDP N G YV+LSN+YA+   W ++ ++R  MK +
Sbjct: 560 ASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHR 619

Query: 433 GLKKDVGCSWIEV 445
           G+ K  GCSWIE+
Sbjct: 620 GVSKQPGCSWIEI 632



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 172/352 (48%), Gaps = 35/352 (9%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N V++   ++G    AL+  + MH     L+ Y+  S+L+A  S K +R G+QV A VT
Sbjct: 115 YNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVT 174

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           KS   S V++G+AL+D+YAK     +A+ +FD +P +N V  N+L++ Y +       L 
Sbjct: 175 KSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALA 234

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M   G   D  TL++++ ACAGL+A   GRQVH  M+ K      D+ + ++L++M
Sbjct: 235 LFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMV-KSDRFREDMVLNNALVDM 293

Query: 234 YGKCGLVTKALQVFN-------------LAGHRLEGE-----------INKDVVLWTSML 269
           Y KCG   +A  VF+             + G+                + K+VV W  ++
Sbjct: 294 YAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLI 353

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYK 328
             Y  N   +E ++L+  +      P    +  V++AC++   ++LG + +   +   ++
Sbjct: 354 ATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFR 413

Query: 329 LEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            + GPE      + LVD+  + G +    K+   M  R + S     W A++
Sbjct: 414 FDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVS-----WNAMI 460



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 40/295 (13%)

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS-----GYCEAKLW- 168
           S +    F+ + L+  YA+L  +HDA  +FD +P +N+   NALLS     G  +  L  
Sbjct: 44  SPFAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALAL 103

Query: 169 ----------------------AGGLELVRLMPALGLD---YDHFTLSALLRACAGLSAA 203
                                   G + +R + A+  D    + ++ ++ L ACA   A+
Sbjct: 104 FGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKAS 163

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
             G QVHA + +   + G+DV++ ++L++MY KC    +A +VF+    R       ++V
Sbjct: 164 RTGEQVHALVTKS--SHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPER-------NIV 214

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W S++  Y +NG   E + L+  M+ +G  PDEV   +V+SAC+     + G +    M
Sbjct: 215 SWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRM 274

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           V   +        + LVD+  + G   +A  + + M  R   S +  + G   SA
Sbjct: 275 VKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSA 329


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/404 (34%), Positives = 211/404 (52%), Gaps = 18/404 (4%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           NP N   +  +I  F  +G+   A++ +S M    I  D Y + S L A  S    R G+
Sbjct: 92  NP-NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGR 150

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP----VKNSVCANALLSGY 162
           +V +   K G  S+  V   +++LY K   + DA  +F+E+P     K++VC  A++ G+
Sbjct: 151 EVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGF 210

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
              +     LE  R M    +  + FT+  +L AC+ L A E GR VH+YM +    L  
Sbjct: 211 VRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIEL-- 268

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           ++F+ ++LI MY +CG + +A  VF+    R       DV+ + +M+     NG  ++ I
Sbjct: 269 NLFVGNALINMYSRCGSIDEAQTVFDEMKDR-------DVITYNTMISGLSMNGKSRQAI 321

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L+  M+    +P  V FV V++ACSH G V  G + F  M  DY +EP  EHY C+VDL
Sbjct: 322 ELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDL 381

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L R G L++A+ LI  M      +    M G LLSAC      ELG+  A+   +    +
Sbjct: 382 LGRVGRLEEAYDLIRTM----KMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQAD 437

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
            G YV+LS++YA    W E  Q+R  MKE G++K+ GCS IEV 
Sbjct: 438 SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVN 481



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 124/255 (48%), Gaps = 6/255 (2%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + A + ++G     F+   L+   +K   I  A  +F      N     AL+ G+  +  
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 110

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +   ++L   M    +  D++ ++++L+AC    A   GR+VH+  ++    L ++  ++
Sbjct: 111 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALK--LGLSSNRLVR 168

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
             ++E+YGKCG +  A +VF       E  + KD V WT+M+  + RN      ++ +  
Sbjct: 169 LRIMELYGKCGELGDARRVFE---EMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRG 225

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M     +P+E   V V+SACS  G +++G     +M   +++E      + L+++  R G
Sbjct: 226 MQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM-RKFEIELNLFVGNALINMYSRCG 284

Query: 348 ELDKAWKLINEMLDR 362
            +D+A  + +EM DR
Sbjct: 285 SIDEAQTVFDEMKDR 299


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/438 (32%), Positives = 230/438 (52%), Gaps = 50/438 (11%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYA---LKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           NP + L +N +I  + R+G        L+ ++ MH  G+  D + L   L +   +    
Sbjct: 140 NPSSLL-YNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVC 198

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            G+ V     + G     +VG++LID+Y K  +I DA  +FD++ V++    NAL++GY 
Sbjct: 199 MGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYM 258

Query: 164 EAKLWAGGLELVRLMP----------------------ALGLDYDHF------------T 189
           +        +L   M                       ALGL +D              T
Sbjct: 259 KEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGL-FDEMLQDGSEMKPNWVT 317

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           + ++L ACA  +A E GR++H +      +L + V  Q++L  MY KC  + +A   F++
Sbjct: 318 IVSVLPACAQSAALERGRRIHDFANGIGLHLNSSV--QTALAGMYAKCYSLVEARCCFDM 375

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                     K+++ W +M+  Y  +G   E + ++E ML  G +PD V F+ ++S CSH
Sbjct: 376 IAQN-----GKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSH 430

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
           +G +  G+ +F  M   + +EP  EHY+C+VDLL RAG L +A +LI++M  +    +  
Sbjct: 431 SGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQ----AGP 486

Query: 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
           S+WGALL+AC      E+ +LAA++   L+P N G YV+LSNLYA+  MW+E+ +LR L+
Sbjct: 487 SVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALL 546

Query: 430 KEKGLKKDVGCSWIEVTG 447
           K +G+KK  GCSWIE+ G
Sbjct: 547 KYQGMKKSPGCSWIEING 564



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 155/326 (47%), Gaps = 57/326 (17%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           + G+Q  A +   G   + F+ + ++ +YA    +  A ++FD I   +S+  N+++  Y
Sbjct: 94  KLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAY 153

Query: 163 CE---AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
                       LE    M  LGL  D+FTL  +L++CA LS    GR VH   +R    
Sbjct: 154 TRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLR--VG 211

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI-------- 258
           L  D ++ +SLI+MY KCG++  A ++F+             +AG+  EGEI        
Sbjct: 212 LEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFE 271

Query: 259 ---NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT--KPDEVAFVTVISACSHTGQV 313
              ++++V WT+M+  Y +NG+ ++ + L++ ML +G+  KP+ V  V+V+ AC+ +  +
Sbjct: 272 RMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAAL 331

Query: 314 KLGIEYFEWMVHDYKLEPG---------------PEHYS-----CLVDLLCRAGELDKAW 353
           + G       +HD+    G                + YS     C  D++ + G+   AW
Sbjct: 332 ERGRR-----IHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAW 386

Query: 354 K-LINEMLDRGHGSSSVSMWGALLSA 378
             +I      G G  +VS++  +L A
Sbjct: 387 NTMITAYASHGCGVEAVSIFENMLRA 412


>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
 gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
          Length = 691

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 211/393 (53%), Gaps = 14/393 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++S +  +     A+   + +H  G  +D+Y L S+L    ++ + R G QV A + 
Sbjct: 312 WNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCINLLNVRLGIQVHALIV 371

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            SG      VGS L+DLYAKL  + DA  +F  +P K+ V  + LL G  + +L +  L 
Sbjct: 372 TSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLPKKDIVAWSGLLMGCAKMELNSLALS 431

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R M   G++ D + +S +L+ C+ L++   G+QVHA+ I++      +    ++LI+M
Sbjct: 432 LFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQVHAFCIKR--GYETEQVTITALIDM 489

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V   L +F     R       DVV WT ++    +NG   E ++++  M+ +G 
Sbjct: 490 YSKCGEVEDGLVLFGCVADR-------DVVCWTGIIVGCAQNGRANEALEIFRQMVQSGL 542

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           KP+EV ++ V++AC H G V      F  M  D++LEP  EHY C+VDLLC+AG   +  
Sbjct: 543 KPNEVTYLGVLTACRHAGLVVEAQTIFGTMKCDHRLEPQLEHYYCMVDLLCQAGYFKEVE 602

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           KLI EM  +       ++W ++L AC       L    A+  L   P++  IYVMLSN Y
Sbjct: 603 KLIAEMPFK----PDKTIWSSMLGACGTHRNTGLVSTIAENLLANCPNDPSIYVMLSNAY 658

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
               MWD + Q+RE  K+ G+K   G SWIE++
Sbjct: 659 GTLGMWDSLSQVREAAKKLGVKA-AGTSWIEIS 690



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 164/369 (44%), Gaps = 37/369 (10%)

Query: 40  TNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
            N    +  RN + +N +I+    NGS   AL+    MH  GI LD +    +L   +  
Sbjct: 192 VNLFNQMPDRNVVSWNTIIAGLAENGSS-RALQFVCKMHREGIKLDKFTFPCALKTCSYA 250

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVCA--- 155
                GKQ+  +V KSG  SS F  SAL+D+Y+    + DA  +FD+      S+C    
Sbjct: 251 GFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQYSGGTGSICDSLV 310

Query: 156 --NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N++LSGY   +     + ++  +   G   D +TLS+ L+ C  L     G QVHA +
Sbjct: 311 LWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCINLLNVRLGIQVHALI 370

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           +     L  D  + S L+++Y K G +  A ++F    HRL     KD+V W+ +L    
Sbjct: 371 VTSGHEL--DYVVGSILVDLYAKLGNMKDAFKLF----HRLP---KKDIVAWSGLLMGCA 421

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           +       + L+  M+  G + D+     V+  CS    +  G +     VH + ++ G 
Sbjct: 422 KMELNSLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQ-----VHAFCIKRGY 476

Query: 334 E----HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           E      + L+D+  + GE++    L   + DR      V  W  ++  C   G+     
Sbjct: 477 ETEQVTITALIDMYSKCGEVEDGLVLFGCVADR-----DVVCWTGIIVGCAQNGR----- 526

Query: 390 LAAQKALEL 398
             A +ALE+
Sbjct: 527 --ANEALEI 533



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 154/327 (47%), Gaps = 41/327 (12%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           +D   + +++     VK  + GK   +H+ K+G+  +V++   L+ +YA    + DA  +
Sbjct: 1   MDLKHIVAAIRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKL 60

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSA 202
           FDE+PVKN V    ++S Y         ++L  R++ +     + F  S +L+AC  +  
Sbjct: 61  FDEMPVKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGE 120

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------- 248
            E GR +H    R+  NL  D+ + ++L++MY KCG ++ A +VF+              
Sbjct: 121 IELGRLIHKRFSRE--NLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTM 178

Query: 249 LAGHRLEGEI-----------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           ++G+  EG +           +++VV W +++     NG  +  ++    M   G K D+
Sbjct: 179 ISGYFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSR-ALQFVCKMHREGIKLDK 237

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAW 353
             F   +  CS+ G +  G +     +H Y L+ G E      S LVD+      LD A 
Sbjct: 238 FTFPCALKTCSYAGFLVAGKQ-----IHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAI 292

Query: 354 KLINEMLDRGHGS--SSVSMWGALLSA 378
           +L ++    G GS   S+ +W ++LS 
Sbjct: 293 RLFDQ-YSGGTGSICDSLVLWNSMLSG 318



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 158/379 (41%), Gaps = 52/379 (13%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           +N + +  ++S +  NG P  A+K ++ M        + +     L A   V +   G+ 
Sbjct: 67  KNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGRL 126

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAK 166
           +    ++      + + +AL+D+Y K   + DA  +FD I ++ NS   N ++SGY +  
Sbjct: 127 IHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISGYFKEG 186

Query: 167 LWAGGLELVRLMP---------------------AL---------GLDYDHFTLSALLRA 196
           L    + L   MP                     AL         G+  D FT    L+ 
Sbjct: 187 LVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSRALQFVCKMHREGIKLDKFTFPCALKT 246

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+       G+Q+H Y+++    L +  F  S+L++MY  C  +  A+++F+       G
Sbjct: 247 CSYAGFLVAGKQIHCYVLKS--GLESSCFAVSALVDMYSNCNGLDDAIRLFDQYSGG-TG 303

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            I   +VLW SML  Y  +   +  + +   +  +G   D     + +  C +   V+LG
Sbjct: 304 SICDSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCINLLNVRLG 363

Query: 317 IEYFEWMVHDYKLEPGPE-HY---SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           I+     VH   +  G E  Y   S LVDL  + G +  A+KL + +  +      +  W
Sbjct: 364 IQ-----VHALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLPKK-----DIVAW 413

Query: 373 GALLSACHDCGKFELGKLA 391
             LL     C K EL  LA
Sbjct: 414 SGLLMG---CAKMELNSLA 429


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/400 (34%), Positives = 218/400 (54%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT-YALCSSLTASTSVKDARFGKQ 107
           RN + ++ +I  +  +     AL+ F  M +      T   L S L A   + D   G++
Sbjct: 274 RNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRK 333

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +  ++ K G +  + +G+ L+ +YAK  +I DA   FDE+  K+SV  +A++SG  +   
Sbjct: 334 LHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGN 393

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
            A  L + R+M   G+D D  T+  +L AC+ L+A + G   H Y+I +      D  + 
Sbjct: 394 AAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR--GFATDTLIC 451

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+MY KCG ++ A +VFN    R++     D+V W +M+  YG +G   E + L+  
Sbjct: 452 NALIDMYSKCGKISFAREVFN----RMD---RHDIVSWNAMIIGYGIHGLGMEALGLFHD 504

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           +L  G KPD++ F+ ++S+CSH+G V  G  +F+ M  D+ + P  EH  C+VD+L RAG
Sbjct: 505 LLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAG 564

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            +D+A   I  M         V +W ALLSAC      ELG+  ++K   L P + G +V
Sbjct: 565 LIDEAHHFIRNM----PFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFV 620

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+Y+    WD+   +R   K+ GLKK  GCSWIE+ G
Sbjct: 621 LLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEING 660



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 181/376 (48%), Gaps = 32/376 (8%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+ + +N +I+     G    A++    M   GI  ++  +   L      K    G
Sbjct: 170 MSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K +  +  +  + + V VG+ L+D+YAK   +  A  +FD + V+N V  +A++ GY  +
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVAS 289

Query: 166 KLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN-- 222
                 LEL  +++    +D    TL ++LRACA L+    GR++H Y+I+    LG+  
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK----LGSVL 345

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEV 281
           D+ + ++L+ MY KCG++  A++ F+        E+N KD V +++++    +NG     
Sbjct: 346 DILLGNTLLSMYAKCGVIDDAIRFFD--------EMNPKDSVSFSAIVSGCVQNGNAAVA 397

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHYSC- 338
           + ++  M ++G  PD    + V+ ACSH   ++ G     +  H Y +  G   +   C 
Sbjct: 398 LSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG-----FCSHGYLIVRGFATDTLICN 452

Query: 339 -LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL--SACHDCGKFELGKLAAQKA 395
            L+D+  + G++  A ++ N M DR      +  W A++     H  G   LG      A
Sbjct: 453 ALIDMYSKCGKISFAREVFNRM-DR----HDIVSWNAMIIGYGIHGLGMEALGLFHDLLA 507

Query: 396 LELDPHNVGIYVMLSN 411
           L L P ++    +LS+
Sbjct: 508 LGLKPDDITFICLLSS 523



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 161/337 (47%), Gaps = 26/337 (7%)

Query: 50  NP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           NP  + +N +I  +  NG    A+  +  M   G+  + Y     L A + +     G +
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + +H    G  S VFV +AL+D YAK  ++ +A+ +F  +  ++ V  NA+++G     L
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               ++L+  M   G+  +  T+  +L       A   G+ +H Y +R+  +  N V + 
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR--SFDNGVVVG 248

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           + L++MY KC  +  A ++F++ G R E       V W++M+G Y  +   KE ++L++ 
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNE-------VSWSAMIGGYVASDCMKEALELFDQ 301

Query: 288 MLM-NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDL 342
           M++ +   P  V   +V+ AC+    +  G +     +H Y ++ G        + L+ +
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRGRK-----LHCYIIKLGSVLDILLGNTLLSM 356

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
             + G +D A +  +EM    +   SVS + A++S C
Sbjct: 357 YAKCGVIDDAIRFFDEM----NPKDSVS-FSAIVSGC 388



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 10/312 (3%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L A    K     K++  H  K+   +   V   L  LY     +  A  +FDEIP  + 
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           +  N ++  Y     + G ++L   M  LG+  + +T   +L+AC+GL A E G ++H++
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSH 134

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
              K   L +DVF+ ++L++ Y KCG++ +A ++F+   HR       DVV W +M+   
Sbjct: 135 A--KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-------DVVAWNAMIAGC 185

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
              G   + ++L   M   G  P+    V V+        +  G     + V     + G
Sbjct: 186 SLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR-RSFDNG 244

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
               + L+D+  +   L  A K+ + M  R   S S  + G + S C         ++  
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMIL 304

Query: 393 QKALELDPHNVG 404
           + A++  P  +G
Sbjct: 305 KDAMDPTPVTLG 316



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 16/256 (6%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKT 73
           I+  + L+  Y  C      G + + ++F   +NP++ + F+ ++S   +NG+   AL  
Sbjct: 347 ILLGNTLLSMYAKC------GVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSI 400

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M + GI  D   +   L A + +   + G     ++   G+ +   + +ALID+Y+K
Sbjct: 401 FRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSK 460

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              I  A  +F+ +   + V  NA++ GY    L    L L   + ALGL  D  T   L
Sbjct: 461 CGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICL 520

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L +C+       GR     M R   ++   +     ++++ G+ GL+ +A          
Sbjct: 521 LSSCSHSGLVMEGRLWFDAMSRD-FSIVPRMEHCICMVDILGRAGLIDEAHHFIR----- 574

Query: 254 LEGEINKDVVLWTSML 269
                  DV +W+++L
Sbjct: 575 -NMPFEPDVRIWSALL 589


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/421 (31%), Positives = 221/421 (52%), Gaps = 16/421 (3%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  C H   LG        L  +  + +  +I+   R+       K F  M    IF + 
Sbjct: 242 YAKCGH---LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNE 298

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
             + S +         + GKQ+ A++ ++G+  S+ + +AL+D+Y K   I +A  +FD 
Sbjct: 299 ITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDS 358

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
              ++ +   A+LS Y +A        L   M   G+     T+ +LL  CA   A + G
Sbjct: 359 TQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG 418

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           + VH+Y+ ++   +  D  + ++L++MY KCG +  A ++F  A       I++D+ +W 
Sbjct: 419 KWVHSYIDKERVEV--DCILNTALVDMYAKCGDINAAGRLFIEA-------ISRDICMWN 469

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +++  +  +GY +E + ++  M   G KP+++ F+ ++ ACSH G V  G + FE MVH 
Sbjct: 470 AIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHT 529

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           + L P  EHY C+VDLL RAG LD+A ++I  M  +     +  +WGAL++AC      +
Sbjct: 530 FGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIK----PNTIVWGALVAACRLHKNPQ 585

Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           LG+LAA + LE++P N G  V++SN+YA    W +   +R+ MK  G+KK+ G S IEV 
Sbjct: 586 LGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVN 645

Query: 447 G 447
           G
Sbjct: 646 G 646



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 21/292 (7%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S L A   V   + GK++   V K G    VFVG+AL+ +Y +   +  A L+FD++  +
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V  + ++      K +   LEL+R M  + +      + +++   A  +    G+ +H
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           AY+IR   N    V   ++L++MY KCG +  A Q+FN       G   K VV WT+M+ 
Sbjct: 219 AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFN-------GLTQKTVVSWTAMIA 271

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
              R+   +E  KL+  M      P+E+  +++I  C  TG ++LG +     +H Y L 
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQ-----LHAYILR 326

Query: 331 PGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            G        + LVD+  +  ++  A  L +   +R      V +W A+LSA
Sbjct: 327 NGFSVSLALATALVDMYGKCSDIRNARALFDSTQNR-----DVMIWTAMLSA 373



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 103/203 (50%), Gaps = 15/203 (7%)

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
           +F   ++L+AC  +S  + G+++H ++++K   L  DVF+ ++L+ MYG+C  V  A  V
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKK--GLDRDVFVGNALMLMYGECACVEYARLV 151

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           F       +  + +DVV W++M+    RN  F   ++L   M     +P EVA V++++ 
Sbjct: 152 F-------DKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNL 204

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
            + T  +++G     +++ +   E  G    + L+D+  + G L  A +L N     G  
Sbjct: 205 FADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFN-----GLT 259

Query: 366 SSSVSMWGALLSACHDCGKFELG 388
             +V  W A+++ C    + E G
Sbjct: 260 QKTVVSWTAMIAGCIRSNRLEEG 282


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/431 (31%), Positives = 227/431 (52%), Gaps = 46/431 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCSSLTASTSVKDARFGKQ 107
           R+ + +N +IS + ++G    AL  FS M +      D + L S+L+A  ++++ + GKQ
Sbjct: 240 RDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQ 299

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAK---------------------------------L 134
           + AH+ ++ + +   VG+ALI +Y+K                                 L
Sbjct: 300 IHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKL 359

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
             I+ A  +FD + V++ V   A++ GY +       +EL R M   G   +++TL+ +L
Sbjct: 360 GDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATML 419

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
              + L++ + GRQ+HA   R      + V + ++LI MY K G +  A  VFNL   + 
Sbjct: 420 SVSSSLASLDHGRQIHASATRSGN--ASSVSVSNALITMYAKSGSINDARWVFNLIHWK- 476

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                +D + WTSM+    ++G  +E + L+E ML NG KPD + +V V+SAC+H G V+
Sbjct: 477 -----RDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVE 531

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G  Y+  M + +K+ P P HY+C++DL  RAG L +A   I  M         V  WG+
Sbjct: 532 QGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIE----PDVIAWGS 587

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL++C      EL ++AA++ L ++P N G Y  L+N+Y+    W+    +R+ MK+KG+
Sbjct: 588 LLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGV 647

Query: 435 KKDVGCSWIEV 445
           KKD G SW+++
Sbjct: 648 KKDQGFSWVQI 658



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 152/331 (45%), Gaps = 67/331 (20%)

Query: 90  CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
            S L  S   KD   GK + A + K+G    VF+ + L++ YAK   I+DA  +FDE+PV
Sbjct: 17  TSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPV 76

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMP----------------------ALGLDYD- 186
           K+    N +LSGY +         +   MP                      A+G+  + 
Sbjct: 77  KSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREM 136

Query: 187 --------HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
                    FTL+ +L +CA +     GR+VH+++++    L + + + +SL+ MY K G
Sbjct: 137 VSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKH--GLSSYISVANSLLNMYAKSG 194

Query: 239 LVTKALQVF------------------------NLAGHRLEGEINKDVVLWTSMLGVYGR 274
               A  VF                        +LA  + E  I +DVV W +M+  Y +
Sbjct: 195 DPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQ 254

Query: 275 NGYFKEVIKLYEAMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           +G+ +E + ++  MLM+  +KPD+    + +SAC++   +KLG +     +H + +    
Sbjct: 255 HGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQ-----IHAHIIRTEF 309

Query: 334 EHY----SCLVDLLCRAGELDKAWKLINEML 360
           + +    + L+ +  ++G ++ A K+I + +
Sbjct: 310 DTFGAVGNALISMYSKSGGVEIAQKIIEQSM 340



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 155/382 (40%), Gaps = 63/382 (16%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R+ + +  +I  + +NG    A++ F  M   G   + Y L + L+ S+S+     G
Sbjct: 372 LRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHG 431

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCE 164
           +Q+ A  T+SG  SSV V +ALI +YAK   I+DA  +F+ I  K +++   +++    +
Sbjct: 432 RQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQ 491

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             L    L L   M   G+  DH T   +L AC  +   E GR  +              
Sbjct: 492 HGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYY-------------- 537

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
                         L+  A ++     H            +  M+ ++GR G  +E    
Sbjct: 538 -------------NLMQNAHKIIPTPSH------------YACMIDLFGRAGLLQEAHAF 572

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLL 343
            E M +   +PD +A+ +++++C     V+L     E ++    +EP     YS L ++ 
Sbjct: 573 IENMPI---EPDVIAWGSLLASCKVHKNVELAEVAAERLL---LIEPENSGAYSALANVY 626

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
              G+ + A  +   M D+G        W  + +  H  G  +           L P   
Sbjct: 627 SACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDD----------GLHPQRD 676

Query: 404 GIYVMLSNLYAKFCMWDEIGQL 425
            IY M++ +      W EI ++
Sbjct: 677 AIYEMMAKI------WKEIKKM 692



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 104/222 (46%), Gaps = 40/222 (18%)

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAG- 251
           G+ +HA +I+   +LG  VF+ ++L+  Y K G +  A +VF+             L+G 
Sbjct: 32  GKSIHARIIKAGLHLG--VFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGY 89

Query: 252 ---------HRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
                    HR+  E+ + D V WT+M+  Y + G F+  I ++  M+ +   P +    
Sbjct: 90  AKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLT 149

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLIN 357
            V+++C+    + +G +     VH + ++ G   Y    + L+++  ++G+   A  + +
Sbjct: 150 NVLASCAAVECLGIGRK-----VHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFD 204

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
            M  +     S S W  ++S+    G  +L ++  ++ +E D
Sbjct: 205 RMKLK-----STSSWNTMISSHMQSGLVDLAQVQFEQMIERD 241


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 227/432 (52%), Gaps = 23/432 (5%)

Query: 20  QSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFS- 75
           Q+ LM  Y+ C      G L +  K  +    +  + +  +I    +   P  A++ F  
Sbjct: 123 QNTLMNMYSNC------GCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDR 176

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            M    +  +   L + LTA    +D    K++  ++ + G+   V + + L+D+Y K  
Sbjct: 177 MMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCG 236

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
            +  A  +FD+   KN    N +++G+ E   +   L L R M   G+  D  T+++LL 
Sbjct: 237 CVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLL 296

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           AC  L A E G+ +HAY+ ++  ++  DV + ++L++MY KCG +  A+QVF    H + 
Sbjct: 297 ACTHLGALELGKWLHAYIKKQRIDV--DVALGTALVDMYAKCGSIETAIQVF----HEMP 350

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
               KDV+ WT+++      G  +  ++ ++ M + G KPD + FV V++ACSH G V  
Sbjct: 351 ---EKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDE 407

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           GI +F  M   Y ++P  EHY  LVD+L RAG + +A +LI  M      +    + G L
Sbjct: 408 GISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSM----PMAPDQFVLGGL 463

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L AC   G  E  + AA++ LE+DP++ G YV+LSN+Y     W+E  + RELM E+G++
Sbjct: 464 LGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMR 523

Query: 436 KDVGCSWIEVTG 447
           K  GCS IEV G
Sbjct: 524 KPPGCSQIEVHG 535



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 172/392 (43%), Gaps = 32/392 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPF--NVVI 58
            +HA    TGL       F +  ++ + + +   +L      L F    NP  +  N +I
Sbjct: 6   QIHAQMLRTGLFFD---PFTASKIVAFCSLQESGSLQYAR--LVFSQIPNPTSYTCNSII 60

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
                      AL  +  M V G+  D Y   S      S +++  GKQ+  H TK G+ 
Sbjct: 61  RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFK---SCRNSSEGKQIHCHSTKLGFA 117

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL- 177
           S  +  + L+++Y+    +  A  +FD++  K  V    ++  + +   W    E VRL 
Sbjct: 118 SDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQ---WDQPNEAVRLF 174

Query: 178 ---MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              M +  +  +  TL  +L ACA        +++H Y+       G  V + + L+++Y
Sbjct: 175 DRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEH--GFGRHVVLNTVLMDVY 232

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG V  A  +F+ A         K++  W  M+  +  +  ++E + L+  M   G K
Sbjct: 233 CKCGCVQLARDLFDKAQ-------EKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIK 285

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
            D+V   +++ AC+H G ++LG ++    +   +++      + LVD+  + G ++ A +
Sbjct: 286 GDKVTMASLLLACTHLGALELG-KWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQ 344

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           + +EM ++      V  W AL+     CG+ E
Sbjct: 345 VFHEMPEK-----DVMTWTALILGLAMCGQAE 371



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 164/369 (44%), Gaps = 59/369 (15%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYA--KLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           KQ+ A + ++G     F  S ++   +  +   +  A L+F +IP   S   N+++ G  
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           +  L    L   + M   GL  D +T  +L ++C   S    G+Q+H +  +      +D
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTK--LGFASD 119

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
            + Q++L+ MY  CG +  A +VF+    ++E   +K VV W +M+GV+ +     E ++
Sbjct: 120 TYAQNTLMNMYSNCGCLVSARKVFD----KME---DKTVVSWATMIGVHAQWDQPNEAVR 172

Query: 284 LYEAMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
           L++ M+ +   KP+EV  V V++AC+    + +        +H+Y  E G   +    + 
Sbjct: 173 LFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKR-----IHEYIDEHGFGRHVVLNTV 227

Query: 339 LVDLLCRAG-------ELDKAWK------------------------LINEMLDRGHGSS 367
           L+D+ C+ G         DKA +                        L  EM  +G    
Sbjct: 228 LMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGD 287

Query: 368 SVSMWGALLSACHDCGKFELGKL--AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQL 425
            V+M  +LL AC   G  ELGK   A  K   +D  +V +   L ++YAK    +   Q+
Sbjct: 288 KVTM-ASLLLACTHLGALELGKWLHAYIKKQRIDV-DVALGTALVDMYAKCGSIETAIQV 345

Query: 426 RELMKEKGL 434
              M EK +
Sbjct: 346 FHEMPEKDV 354


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/399 (33%), Positives = 213/399 (53%), Gaps = 13/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +NV+IS +  N  P  A   F+ M   G   D +   + L+   S++   FGKQV
Sbjct: 222 RDLVVWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQV 281

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             H+ +  + S V V SALI++YAK   I DA  +FD + ++N V  N ++ GY   +  
Sbjct: 282 HGHILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREG 341

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              ++L+R M   G   D  T+S+ +  C  +SA     Q HA+ ++   +    + + +
Sbjct: 342 NEVMKLLREMLREGFSPDELTISSTISLCGYVSAITETMQAHAFAVKS--SFQEFLSVAN 399

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI  Y KCG +T A + F     RL  E   D+V WTS++  Y  +G  KE  +++E M
Sbjct: 400 SLISAYSKCGSITSACKCF-----RLTRE--PDLVSWTSLINAYAFHGLAKEATEVFEKM 452

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  G  PD+++F+ V+SACSH G V  G+ YF  M   YK+ P   HY+CLVDLL R G 
Sbjct: 453 LSCGIIPDQISFLGVLSACSHCGLVTKGLHYFNLMTSVYKIVPDSGHYTCLVDLLGRYGL 512

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           +++A++ +  M      ++     GA +++C+      L K AA+K   ++P     Y +
Sbjct: 513 INEAFEFLRSMPMEAESNT----LGAFVASCNLHANIGLAKWAAEKLFTIEPEKNVNYAV 568

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +SN+YA    W ++ ++R +M  K   +  GCSWIE+T 
Sbjct: 569 MSNIYASHRHWSDVERVRRMMGNKCDARVPGCSWIEITN 607



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 176/419 (42%), Gaps = 52/419 (12%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVIS-- 59
           +HAH  + G   +  +  Q++++  Y  C    +   L    + L+ RN + +N++I   
Sbjct: 72  LHAHLIKFGFCHV--LSLQNQILGVYLKCTEADDAEKL---FEELSVRNVVSWNILIRGI 126

Query: 60  ----DFCRNGS-PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
               D   N S        F  M +  +  D+              D   G Q+     K
Sbjct: 127 VGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVK 186

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            G     FVGS L+DLYA+  L+ +A  +F  +  ++ V  N ++S Y    L      +
Sbjct: 187 LGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVM 246

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
             LM   G + D FT S LL  C  L   +FG+QVH +++R   +  +DV + S+LI MY
Sbjct: 247 FNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILR--LSFDSDVLVASALINMY 304

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            K   +  A ++F       +  + ++VV W +++  YG      EV+KL   ML  G  
Sbjct: 305 AKNENIVDAHRLF-------DNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFS 357

Query: 295 PDEVAFVTVISAC-----------SHTGQVKLGIEYFEWMVHD----------------- 326
           PDE+   + IS C           +H   VK   + F  + +                  
Sbjct: 358 PDELTISSTISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKC 417

Query: 327 YKL--EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           ++L  EP    ++ L++     G   +A ++  +ML  G     +S  G +LSAC  CG
Sbjct: 418 FRLTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLG-VLSACSHCG 475



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 50/293 (17%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG--- 161
           GKQ+ AH+ K G+   + + + ++ +Y K     DAE +F+E+ V+N V  N L+ G   
Sbjct: 69  GKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIVG 128

Query: 162 ------------YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
                        C +      LELV  +P      D  T + L   C      + G Q+
Sbjct: 129 CGDANENDSNQQQCFSYFKRMLLELV--VP------DSTTFNGLFGVCVKFHDIDMGFQL 180

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H + ++   +L  D F+ S L+++Y +CGLV  A +VF +  HR       D+V+W  M+
Sbjct: 181 HCFAVKLGLDL--DCFVGSVLVDLYAQCGLVENARRVFLVVQHR-------DLVVWNVMI 231

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW--MVHDY 327
             Y  N   +E   ++  M  +G   DE  F  ++S C         +EY+++   VH +
Sbjct: 232 SCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICD-------SLEYYDFGKQVHGH 284

Query: 328 KLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            L    +      S L+++  +   +  A +L + M+ R     +V  W  ++
Sbjct: 285 ILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVIR-----NVVAWNTII 332


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/431 (31%), Positives = 220/431 (51%), Gaps = 48/431 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N ++S F R+G    A+  F  +H  G   D   + S L +    +    G+ + 
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL-- 167
            +V K G L    V SA+ID+Y K   ++    +F++  +  +   NA ++G     L  
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 168 --------------------WAG-------------GLELVRLMPALGLDYDHFTLSALL 194
                               W                LEL R M   G+  +H T+ ++L
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            AC  ++A   GR  H + +R   +L ++V + S+LI+MY KCG +  +  VFN+     
Sbjct: 396 PACGNIAALGHGRSTHGFAVR--VHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMP--- 450

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                K++V W S++  +  +G  KEV+ ++E+++    KPD ++F +++SAC   G   
Sbjct: 451 ----TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 506

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G +YF+ M  +Y ++P  EHYSC+V+LL RAG+L +A+ LI EM           +WGA
Sbjct: 507 EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM----PFEPDSCVWGA 562

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL++C      +L ++AA+K   L+P N G YV+LSN+YA   MW E+  +R  M+  GL
Sbjct: 563 LLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGL 622

Query: 435 KKDVGCSWIEV 445
           KK+ GCSWI+V
Sbjct: 623 KKNPGCSWIQV 633



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 9/219 (4%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q  A + KSG  +  ++ + LI  Y+     +DA+L+   IP       ++L+    +AK
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L+   + +   M + GL  D   L  L + CA LSA + G+Q+H   +     L  D F+
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHC--VSCVSGLDMDAFV 153

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           Q S+  MY +CG +  A +VF+    R+    +KDVV  +++L  Y R G  +EV+++  
Sbjct: 154 QGSMFHMYMRCGRMGDARKVFD----RMS---DKDVVTCSALLCAYARKGCLEEVVRILS 206

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            M  +G + + V++  ++S  + +G  K  +  F+ + H
Sbjct: 207 EMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHH 245



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 155/378 (41%), Gaps = 71/378 (18%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           ++  FS M  HG+  D++ L +       +   + GKQ+      SG     FV  ++  
Sbjct: 100 SIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFH 159

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE-----------AKLWAGGLE----- 173
           +Y +   + DA  +FD +  K+ V  +ALL  Y             +++ + G+E     
Sbjct: 160 MYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVS 219

Query: 174 -------------------LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
                              + + +  LG   D  T+S++L +         GR +H Y+I
Sbjct: 220 WNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVI 279

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEINK- 260
           ++   L  D  + S++I+MYGK G V   + +FN             + G    G ++K 
Sbjct: 280 KQ--GLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337

Query: 261 --------------DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
                         +VV WTS++    +NG   E ++L+  M + G KP+ V   +++ A
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
           C +   +  G     + V  + L+      S L+D+  + G ++ +  + N M      +
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLSQIVFNMM-----PT 451

Query: 367 SSVSMWGALLSACHDCGK 384
            ++  W +L++     GK
Sbjct: 452 KNLVCWNSLMNGFSMHGK 469


>gi|147818972|emb|CAN67116.1| hypothetical protein VITISV_026465 [Vitis vinifera]
          Length = 1817

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/403 (34%), Positives = 222/403 (55%), Gaps = 17/403 (4%)

Query: 46   LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
            +   + + +  +IS F +NG    A+  F  M    I  +     S ++A T ++   F 
Sbjct: 1377 MEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCVTYVSXISACTGLETI-FD 1435

Query: 106  K--QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            +   + AHV K G+    FV S LID Y+K   I  A L+F     ++++  N+++SGY 
Sbjct: 1436 QCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYS 1495

Query: 164  EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
            +       L+L   M   GL     TL+++L AC  L+  + GRQVH+ + +      ++
Sbjct: 1496 QNLXGEEALKLFVZMRNNGLXPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSE--SN 1553

Query: 224  VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
            VF+ S+L++MY KCG + +A  VF  A       + K+ VLWTSM+  Y ++G   E + 
Sbjct: 1554 VFVVSALLDMYSKCGSIDEARCVFXQA-------VEKNTVLWTSMITGYAQSGRGPEGLG 1606

Query: 284  LYEAMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L+E ++   G  PD + F  V++AC+H G +  GI+YF  M  DY L P  + Y+CLVDL
Sbjct: 1607 LFERLVXEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQMRRDYGLVPDLDQYACLVDL 1666

Query: 343  LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
              R G L KA     E+++      +  MWG+ LS+C   G+ ELG+ AA K  +++P +
Sbjct: 1667 YVRNGHLRKA----KELMEAXPXEPNSVMWGSFLSSCKLYGEAELGREAADKLFKMEPCS 1722

Query: 403  VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
               YV ++++YA+  +W E+ ++R+LMK+KGL+K  G SW+EV
Sbjct: 1723 TAPYVAMASIYAQAGLWSEVVEIRKLMKQKGLRKSAGWSWVEV 1765



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 156/320 (48%), Gaps = 24/320 (7%)

Query: 70   ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
            AL++F  M+  G     + LC++L +   + +   G Q+ A + ++G+  ++F+ SAL+D
Sbjct: 1300 ALESFXRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALVD 1359

Query: 130  LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
            LYAK   I DA+ +FD +   + V   +++SG+ +       +   + M    +  +  T
Sbjct: 1360 LYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCVT 1419

Query: 190  LSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
              + + AC GL    +    +HA++++     G   F+ S LI+ Y KCG + +A+ +F 
Sbjct: 1420 YVSXISACTGLETIFDQCALLHAHVVK--LGFGVKTFVVSCLIDCYSKCGRIDQAVLLFG 1477

Query: 249  LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                     I +D +L+ SM+  Y +N   +E +KL+  M  NG  P +    ++++AC 
Sbjct: 1478 TT-------IERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLXPTDHTLTSILNACG 1530

Query: 309  HTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGH 364
                ++ G +     VH    + G E      S L+D+  + G +D+A  +  + +++  
Sbjct: 1531 SLTILQQGRQ-----VHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFXQAVEK-- 1583

Query: 365  GSSSVSMWGALLSACHDCGK 384
               +  +W ++++     G+
Sbjct: 1584 ---NTVLWTSMITGYAQSGR 1600


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 220/396 (55%), Gaps = 18/396 (4%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +IS +  N     A+  F  +   G  +++  L   +         +  + +Q  
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNL 340

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
             K G +    V +AL  +Y +L  +  A  +FDE P K+    NA++SGY +  L    
Sbjct: 341 SLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400

Query: 172 LELVR-LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
           + L + +MP L    +  T++++L ACA L A   G+ VH  +  K   L ++V++ ++L
Sbjct: 401 ISLFQEMMPQLS--PNPVTVTSILSACAQLGALSIGKWVHGLI--KSERLESNVYVSTAL 456

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           ++MY KCG + +A Q+F+L        ++K+VV W +M+  YG +G+ KE +KL+  ML 
Sbjct: 457 VDMYAKCGSIVEARQLFDLM-------VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQ 509

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           +G  P  V F++++ ACSH+G V  G E F  M ++Y  +P  EHY+C+VD+L RAG+L 
Sbjct: 510 SGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLT 569

Query: 351 KAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            A + I  M L+ G      ++WGALL AC      E+  +A+++  +LDP NVG YV+L
Sbjct: 570 NALEFIERMPLEPGP-----AVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLL 624

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           SN+Y+    + +   +R+++K++ L K  GC+ IE+
Sbjct: 625 SNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEI 660



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 188/424 (44%), Gaps = 65/424 (15%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVH-----GIFLDTYALCSSLTASTSVKDARFGKQV 108
           FNV+I  F  NG P    K+  F++ H      +  D +    +++A++ ++D R G  +
Sbjct: 80  FNVLIRGFSDNGLP----KSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            AH    G  S++FVGSA++DLY K      A  +FD +P +++V  N ++SG+     +
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + +   M  +GL +D  TL+ +L A A L     G  +     +K   L +DV++ +
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKK--GLHSDVYVLT 253

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEA 287
            LI +Y KCG   K   +F+        +I++ D++ + +M+  Y  N   +  + L+  
Sbjct: 254 GLISLYSKCGKSCKGRILFD--------QIDQPDLISYNAMISGYTFNHETESAVTLFRE 305

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLL 343
           +L +G + +    V +I        ++L       ++ +  L+ G    P   + L  + 
Sbjct: 306 LLASGQRVNSSTLVGLIPVYLPFNHLQLS-----RLIQNLSLKIGIILQPSVSTALTTVY 360

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWG-----------------------------A 374
           CR  E+  A +L +E  ++   S +  + G                             +
Sbjct: 361 CRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTS 420

Query: 375 LLSACHDCGKFELGK----LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430
           +LSAC   G   +GK    L   + LE    NV +   L ++YAK     E  QL +LM 
Sbjct: 421 ILSACAQLGALSIGKWVHGLIKSERLE---SNVYVSTALVDMYAKCGSIVEARQLFDLMV 477

Query: 431 EKGL 434
           +K +
Sbjct: 478 DKNV 481



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 157/338 (46%), Gaps = 18/338 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS F RN     +++ F  M   G+  D+  L + LTA   +++ R G  +
Sbjct: 177 RDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGI 236

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           Q   +K G  S V+V + LI LY+K        ++FD+I   + +  NA++SGY      
Sbjct: 237 QCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHET 296

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + L R + A G   +  TL  L+      +  +  R +    ++    L   V   +
Sbjct: 297 ESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSV--ST 354

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L  +Y +   V  A Q+F+ +         K +  W +M+  Y +NG     I L++ M
Sbjct: 355 ALTTVYCRLNEVQFARQLFDESPE-------KSLASWNAMISGYTQNGLTDRAISLFQEM 407

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            M    P+ V   +++SAC+  G + +G ++   ++   +LE      + LVD+  + G 
Sbjct: 408 -MPQLSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGS 465

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGK 384
           + +A +L + M+D+     +V  W A+++    H  GK
Sbjct: 466 IVEARQLFDLMVDK-----NVVTWNAMITGYGLHGHGK 498


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/431 (31%), Positives = 220/431 (51%), Gaps = 48/431 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N ++S F R+G    A+  F  +H  G   D   + S L +    +    G+ + 
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL-- 167
            +V K G L    V SA+ID+Y K   ++    +F++  +  +   NA ++G     L  
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 168 --------------------WAG-------------GLELVRLMPALGLDYDHFTLSALL 194
                               W                LEL R M   G+  +H T+ ++L
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            AC  ++A   GR  H + +R   +L ++V + S+LI+MY KCG +  +  VFN+     
Sbjct: 396 PACGNIAALGHGRSTHGFAVR--VHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMP--- 450

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                K++V W S++  +  +G  KEV+ ++E+++    KPD ++F +++SAC   G   
Sbjct: 451 ----TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 506

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G +YF+ M  +Y ++P  EHYSC+V+LL RAG+L +A+ LI EM           +WGA
Sbjct: 507 EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM----PFEPDSCVWGA 562

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL++C      +L ++AA+K   L+P N G YV+LSN+YA   MW E+  +R  M+  GL
Sbjct: 563 LLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGL 622

Query: 435 KKDVGCSWIEV 445
           KK+ GCSWI+V
Sbjct: 623 KKNPGCSWIQV 633



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 9/219 (4%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q  A + KSG  +  ++ + LI  Y+     +DA+L+   IP       ++L+    +AK
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L+   + +   M + GL  D   L  L + CA LSA + G+Q+H   +     L  D F+
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHC--VSCVSGLDMDAFV 153

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           Q S+  MY +CG +  A +VF+    R+    +KDVV  +++L  Y R G  +EV+++  
Sbjct: 154 QGSMFHMYMRCGRMGDARKVFD----RMS---DKDVVTCSALLCAYARKGCLEEVVRILS 206

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            M  +G + + V++  ++S  + +G  K  +  F+ + H
Sbjct: 207 EMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHH 245



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 145/353 (41%), Gaps = 66/353 (18%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           ++  FS M  HG+  D++ L +       +   + GKQ+      SG     FV  ++  
Sbjct: 100 SIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFH 159

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE-----------AKLWAGGLE----- 173
           +Y +   + DA  +FD +  K+ V  +ALL  Y             +++ + G+E     
Sbjct: 160 MYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVS 219

Query: 174 -------------------LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
                              + + +  LG   D  T+S++L +         GR +H Y+I
Sbjct: 220 WNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVI 279

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEINK- 260
           ++   L  D  + S++I+MYGK G V   + +FN             + G    G ++K 
Sbjct: 280 KQ--GLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337

Query: 261 --------------DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
                         +VV WTS++    +NG   E ++L+  M + G KP+ V   +++ A
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           C +   +  G     + V  + L+      S L+D+  + G ++ +  + N M
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLSQIVFNMM 449


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/426 (31%), Positives = 214/426 (50%), Gaps = 46/426 (10%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N  I    +  SP+ A+  ++ + + G+  D+Y++ S L A   +     G+Q+     
Sbjct: 90  YNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTV 149

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFD---------------------------- 145
            S     V V ++LI +Y+    + DA  +FD                            
Sbjct: 150 SSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARK 209

Query: 146 ---EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
              E+P +N +    L++GY +       +EL R M    ++ D   + A+L ACA L A
Sbjct: 210 VFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGA 269

Query: 203 AEFGRQVHAYMIRK-CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
            E G  +H Y+ +   C +   V + ++LI+MY K G + +AL+VF       E    K 
Sbjct: 270 LELGEWIHNYIEKHGLCRI---VSLYNALIDMYAKSGNIRRALEVF-------ENMKQKS 319

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           V+ W++++     +G   E I ++  M     +P+EV FV ++SACSH G V +G  YF+
Sbjct: 320 VITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFD 379

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            M   YK+EP  EHY C++DLL RAG L +A KL+++M       ++  +WG+LL+A + 
Sbjct: 380 QMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDM----PFEANAMIWGSLLAASNT 435

Query: 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCS 441
               EL +LA +   +L+P N G YV+LSN YA    W+E G +R+LM+  G+KK  G S
Sbjct: 436 HRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGS 495

Query: 442 WIEVTG 447
            IE+  
Sbjct: 496 VIEINN 501



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 105/238 (44%), Gaps = 10/238 (4%)

Query: 36  LGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           +G L +  K  N    RN + +  +I+ + +   P  A++ F  M +  +  D  A+ + 
Sbjct: 201 VGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAV 260

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L+A   +     G+ +  ++ K G    V + +ALID+YAK   I  A  +F+ +  K+ 
Sbjct: 261 LSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSV 320

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           +  + +++      L    +++   M    +  +  T  A+L AC+ +   + GR     
Sbjct: 321 ITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQ 380

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           M +    +   +     +I++  + G + +A ++     H +  E N   ++W S+L 
Sbjct: 381 M-QSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLL----HDMPFEAN--AMIWGSLLA 431


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/406 (33%), Positives = 220/406 (54%), Gaps = 15/406 (3%)

Query: 42  CLKFLN--PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           C  F N   R+ + +N +IS    NG    AL+ F  M    +    + L S L A ++ 
Sbjct: 127 CRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNS 186

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
            + +   Q+ + V K G++  V + S LI  Y +   + +++ +F EI   N V  N ++
Sbjct: 187 NNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMI 246

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           + +  A  +   L L + + +L    D  T S +L+AC+ ++  + GR VH+ +++    
Sbjct: 247 TTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKT--G 304

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
              D F++SS+I++Y KCG + +A + F  +           +  W +M+  Y  +G ++
Sbjct: 305 FDQDSFVESSVIDIYCKCGSIGQAEKAFRSSSM-------NSLAAWNAMMMGYAHHGCYQ 357

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           EV  L+  M   G +PDE+ ++ V+S+C H G VK    Y + M   + + P  EHY+C+
Sbjct: 358 EVFDLFNKMSQFGIEPDEITYLGVLSSCCHGGLVKEARHYLDSMFELHGIIPHLEHYACM 417

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           +DLL R G L+ A K I+ M  +      V +W  LLSAC+  G  ELG++AA+K LE+ 
Sbjct: 418 IDLLGRVGLLEDAKKTIDHMPIQ----PDVHIWQILLSACNIHGHVELGRVAARKLLEIH 473

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           P N   Y++LSNLYA   MW+ +G+LR+ MKEK L+K+ G SWI+V
Sbjct: 474 PENESAYILLSNLYASVGMWNAVGRLRKEMKEKNLRKEPGSSWIQV 519



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 164/339 (48%), Gaps = 29/339 (8%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           A++ F  +   G+ ++ Y L + L+    VK    GKQ+QA   K+G+   V V +AL+ 
Sbjct: 56  AVELFRIVLSLGLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVS 115

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y K   I DA  +F  + +++SV  N+L+S   E       LE+   M  L L     T
Sbjct: 116 MYGKCGQICDACRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHT 175

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L+++L A +  +  +   Q+H+ +++  C    DV M S LI  YG+C  + ++ +VF  
Sbjct: 176 LASILEAVSNSNNTKQVIQIHSLVVK--CGFMFDVSMISCLITAYGRCNSMDESKRVF-- 231

Query: 250 AGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                  EI+K ++V   +M+  + R GY+ + + LY+ +     K D   F  ++ ACS
Sbjct: 232 ------AEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACS 285

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGH 364
               ++LG       VH   L+ G +      S ++D+ C+ G + +A K       R  
Sbjct: 286 AITDMQLG-----RAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAF-----RSS 335

Query: 365 GSSSVSMWGALLS--ACHDCGK--FELGKLAAQKALELD 399
             +S++ W A++   A H C +  F+L    +Q  +E D
Sbjct: 336 SMNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFGIEPD 374



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 25/247 (10%)

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           SS+   +A++ +YA+     DA  +FDEI   + V     +    +       +EL R++
Sbjct: 7   SSMHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERIGTASDGH---EAVELFRIV 63

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGK 236
            +LGLD + +TL  +L    G+     G+Q+ A     C   G    V + ++L+ MYGK
Sbjct: 64  LSLGLDVNEYTLINVLSMIGGVKFLNAGKQIQAL----CHKTGYFQVVSVSNALVSMYGK 119

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG +  A +VF          I +D V W S++     NG+  + ++++  M     +P 
Sbjct: 120 CGQICDACRVF-------YNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPT 172

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKA 352
                +++ A S++   K  I+     +H   ++ G        SCL+    R   +D++
Sbjct: 173 IHTLASILEAVSNSNNTKQVIQ-----IHSLVVKCGFMFDVSMISCLITAYGRCNSMDES 227

Query: 353 WKLINEM 359
            ++  E+
Sbjct: 228 KRVFAEI 234



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 18/164 (10%)

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFK 279
           G+ +   ++++ MY +CG    A++VF+        EI + DVV WT  +G    +G+  
Sbjct: 6   GSSMHFSNAVMSMYARCGREVDAIKVFD--------EIAEPDVVSWTERIGT-ASDGH-- 54

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E ++L+  +L  G   +E   + V+S       +  G +  + + H           + L
Sbjct: 55  EAVELFRIVLSLGLDVNEYTLINVLSMIGGVKFLNAG-KQIQALCHKTGYFQVVSVSNAL 113

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           V +  + G++  A ++   M+ R     SVS W +L+SAC + G
Sbjct: 114 VSMYGKCGQICDACRVFYNMIIR----DSVS-WNSLISACSENG 152


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/407 (33%), Positives = 219/407 (53%), Gaps = 19/407 (4%)

Query: 44  KFLNPRNPLPFNVVISDFCRNGSPLYA-----LKTFSFMHVHGIFLDTYALCSSLTASTS 98
           +   P + + +N ++  + R+ S   +     ++ F  M   G+  DTY   S L A  +
Sbjct: 86  RVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTFVSLLKACAA 145

Query: 99  VKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
            +    G+Q  A   K G     +V   LI++YA+      A + F        V  NA+
Sbjct: 146 ARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCVVSYNAM 205

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           ++    +      L L R M A GL+    T+ ++L ACA L A + GR +H Y +RK  
Sbjct: 206 IAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHDY-VRKL- 263

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
            LG+ V + ++L++MY KCG +  A+ VF       +G  ++D   W+ M+  Y  +GY 
Sbjct: 264 GLGSLVKVSTALVDMYAKCGSLEDAIAVF-------QGMESRDRQAWSVMIVAYANHGYG 316

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           +E I L+E M   G KPD++ F+ ++ ACSH+G V  G+ YF+ M  D+ + PG +HY C
Sbjct: 317 REAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDM-KDHGIVPGIKHYGC 375

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           + DLL R+G+L++A+K I+E+      + +  +W  LLSAC   G  ELGK   ++ LEL
Sbjct: 376 VTDLLARSGQLERAYKFIDELPI----NPTPILWRTLLSACGGHGDVELGKRVFERILEL 431

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           D  + G YV+ SNL A    W+E+ ++R+LM +KG+ K  GCS IE+
Sbjct: 432 DDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEI 478


>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 581

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/407 (32%), Positives = 219/407 (53%), Gaps = 23/407 (5%)

Query: 48  PR---NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           PR   + + +N +I+ + R G P  AL++F  M    + LD   L + L A       + 
Sbjct: 155 PRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKV 214

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G    A V  +G+  + ++GS+L+ +YAK  ++ +A  +F+ +P +N VC  ++++G  +
Sbjct: 215 GSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQ 274

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN---LG 221
           +  +   ++L R M   G+  D  T++ ++ +C  + A + GR +HAY     C+   LG
Sbjct: 275 SGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAY-----CDGHGLG 329

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            ++ +++SLI+MY KCG V KA Q+F+       G   +DV  WT M+  +  NG   E 
Sbjct: 330 KELSVKNSLIDMYSKCGDVNKAYQIFH-------GLTKRDVFTWTVMIMGFAMNGLCVEA 382

Query: 282 IKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
           + L+  M   +   P+EV F+ V++ACSH G V+ G  +F  M   Y L P  EHY C+V
Sbjct: 383 LDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMV 442

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RA  L +A + I +M      +  V +W +LL AC   G+  L + AA++  +L+P
Sbjct: 443 DLLGRAKLLAEAEQFIKDM----PVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEP 498

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
              G +V+LSN+YA    W ++  +R  M      K  GCS+IEV G
Sbjct: 499 KRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDG 545



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 12/281 (4%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           LD Y+L  +++A+  V     G Q  A   K    S  FV +ALI++Y+       A L+
Sbjct: 91  LDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLV 150

Query: 144 FDEIP--VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            D  P    + V  N +++GY    +    L+    M    +  D  TL  +L ACA   
Sbjct: 151 LDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTG 210

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
           A + G   HA ++     +  + ++ SSL+ MY KCG+V +A +VFN    R       +
Sbjct: 211 AMKVGSLCHALVVLNGFEI--NCYIGSSLVSMYAKCGMVEEARRVFNRMPER-------N 261

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           VV WTSM+    ++G FKE + L+  M + G K D+    TV+S+C   G + LG  Y  
Sbjct: 262 VVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLG-RYLH 320

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
                + L       + L+D+  + G+++KA+++ + +  R
Sbjct: 321 AYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKR 361



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 13/201 (6%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           D+++L+  + A A + + + G Q HA  ++   +L +D F+ ++LI MY  C     A  
Sbjct: 92  DNYSLNIAISAAARVPSLDVGSQFHALSLK--LSLASDSFVLNALINMYSSCNYPASARL 149

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
           V + A          DVV W +++  Y R G   + ++ +  M     + DEV  + V+ 
Sbjct: 150 VLDSAP-----RWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLV 204

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
           AC+ TG +K+G      +V +   E      S LV +  + G +++A ++ N M +R   
Sbjct: 205 ACARTGAMKVGSLCHALVVLN-GFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPER--- 260

Query: 366 SSSVSMWGALLSACHDCGKFE 386
             +V  W ++++ C   G+F+
Sbjct: 261 --NVVCWTSMIAGCTQSGRFK 279


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/408 (36%), Positives = 212/408 (51%), Gaps = 27/408 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + ++ VI+ + + G    AL  F  M + G   +   L S L+   S      GK+  
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETH 409

Query: 110 AHVTKSGWL---------SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS--VCANAL 158
            H  K  W+           + V +ALID+Y+K      A  MFD IP K+   V    L
Sbjct: 410 CHAIK--WILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 467

Query: 159 LSGYCEAKLWAGGLELVR--LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           + G  +       LEL    L P   +  + FT+S  L ACA L A  FGRQ+HAY++R 
Sbjct: 468 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 527

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
                  +F+ + LI+MY K G V  A  VF+    R       + V WTS++  YG +G
Sbjct: 528 RFESAM-LFVANCLIDMYSKSGDVDAARVVFDNMHQR-------NGVSWTSLMTGYGMHG 579

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
             +E ++++  M      PD V FV V+ ACSH+G V  GI YF  M  D+ + PG EHY
Sbjct: 580 RGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHY 639

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
           +C+VDLL RAG LD+A +LI  M  +     + ++W ALLSAC      ELG+ AA + L
Sbjct: 640 ACMVDLLSRAGRLDEAMELIRGMPMK----PTPAVWVALLSACRVYANVELGEYAANQLL 695

Query: 397 ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           EL+  N G Y +LSN+YA    W ++ ++R LMK  G+KK  GCSW++
Sbjct: 696 ELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQ 743



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 207/459 (45%), Gaps = 67/459 (14%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           +VHA  F +G      +   + L+  Y  C   +N   + + ++     + + +N +++ 
Sbjct: 166 SVHAVVFASGFEWNVFV--GNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 223

Query: 61  FCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS 119
           + + G  + A+K F  M    GI  D  +L + L A  SV     GKQV  +  +SG   
Sbjct: 224 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 283

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC---------------- 163
            VFVG+A++D+YAK  ++ +A  +F+ + VK+ V  NA+++GY                 
Sbjct: 284 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIR 343

Query: 164 EAKL------WAG-------------GLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           E K+      W+               L++ R M   G + +  TL +LL  CA      
Sbjct: 344 EEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLL 403

Query: 205 FGRQVHAYMIRKCCNL-----GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
            G++ H + I+   NL     G+D+ + ++LI+MY KC     A  +F+L   +     +
Sbjct: 404 HGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPK-----D 458

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM--NGTKPDEVAFVTVISACSHTGQVKLGI 317
           + VV WT ++G   ++G   E ++L+  ML   N   P+       + AC+  G ++ G 
Sbjct: 459 RSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGR 518

Query: 318 EYFEWMVHDYKLEPGPEH-----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           +     +H Y L    E       +CL+D+  ++G++D A  + + M    H  + VS W
Sbjct: 519 Q-----IHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM----HQRNGVS-W 568

Query: 373 GALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            +L++    H  G+  L      + + L P  V   V+L
Sbjct: 569 TSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVL 607



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 172/368 (46%), Gaps = 54/368 (14%)

Query: 71  LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL 130
           L+ +  M   G   D Y     L A   +   R G  V A V  SG+  +VFVG+ L+ +
Sbjct: 130 LQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSM 189

Query: 131 YAKLLLIHDAELMFDEIP---VKNSVCANALLSGYCEAKLWAGGLELV-RLMPALGLDYD 186
           Y +     +A  +FDE+    V + V  N++++ Y +       +++  R+   LG+  D
Sbjct: 190 YGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPD 249

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
             +L  +L ACA + A   G+QVH Y +R    L  DVF+ +++++MY KCG++ +A +V
Sbjct: 250 AVSLVNVLPACASVGAWSRGKQVHGYALRS--GLFEDVFVGNAVVDMYAKCGMMEEANKV 307

Query: 247 FN-------------LAGHR---------------LEGEINKDVVLWTSMLGVYGRNGYF 278
           F              + G+                 E +I  +VV W++++  Y + G  
Sbjct: 308 FERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLG 367

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY----FEWMVHDYKLEPGPE 334
            E + ++  ML+ G++P+ V  V+++S C+  G +  G E      +W+++  + +PG +
Sbjct: 368 FEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDD 427

Query: 335 --HYSCLVDLL--CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
               + L+D+   C++ +  +A   +    DR     SV  W  L+      G+      
Sbjct: 428 LMVINALIDMYSKCKSPKAARAMFDLIPPKDR-----SVVTWTVLIGGNAQHGE------ 476

Query: 391 AAQKALEL 398
            A +ALEL
Sbjct: 477 -ANEALEL 483



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 102/258 (39%), Gaps = 34/258 (13%)

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           S L   C  L++AE     H  ++ +   L +D    + +I MY       KAL V    
Sbjct: 52  STLFHQCKSLASAEL---THQQLLVQ--GLPHD---PTHIISMYLTFNSPAKALSVL--- 100

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
             RL    +  V  W  ++      G+ ++V++LY  M   G +PD   F  V+ AC   
Sbjct: 101 -RRLHPS-SHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEI 158

Query: 311 GQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
              + G       VH      G E      + LV +  R G  + A ++ +EM +RG G 
Sbjct: 159 PSFRCGAS-----VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVG- 212

Query: 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY---VMLSNLY---AKFCMWD 420
             +  W ++++A    G      + A K  E    ++GI    V L N+    A    W 
Sbjct: 213 -DLVSWNSIVAAYMQGGD----SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWS 267

Query: 421 EIGQLRELMKEKGLKKDV 438
              Q+       GL +DV
Sbjct: 268 RGKQVHGYALRSGLFEDV 285


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 222/421 (52%), Gaps = 38/421 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR--FGK 106
           R+ + +N+++S + R G  + A + F    V  +F  T A+ S    +  +++AR  F  
Sbjct: 222 RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWT-AVVSGYAQNGMLEEARRVFDA 280

Query: 107 QVQAHVTKSGWLSSVFVGSALIDL----------------------YAKLLLIHDAELMF 144
             + +      + + ++   ++D                       YA+  ++ +A+ +F
Sbjct: 281 MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 340

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +P K++V   A+L+ Y +       L+L   M   G   +    + +L  CA ++A E
Sbjct: 341 DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALE 400

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G Q+H  +IR    +G   F+ ++L+ MY KCG +  A   F       E    +DVV 
Sbjct: 401 CGMQLHGRLIRAGYGVG--CFVGNALLAMYFKCGNMEDARNAF-------EEMEERDVVS 451

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +M+  Y R+G+ KE +++++ M    TKPD++  V V++ACSH+G V+ GI YF  M 
Sbjct: 452 WNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMH 511

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           HD+ +   PEHY+C++DLL RAG L +A  L+ +M          +MWGALL A      
Sbjct: 512 HDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM----PFEPDSTMWGALLGASRIHRN 567

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            ELG+ AA+K  EL+P N G+YV+LSN+YA    W +  ++R +M+E+G+KK  G SWIE
Sbjct: 568 PELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIE 627

Query: 445 V 445
           V
Sbjct: 628 V 628



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 129/312 (41%), Gaps = 40/312 (12%)

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           V   +  I  + +   + DAE +F  +P +++   NA+L+GY           L R +P 
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
                D+++ + LL A A  S+    R +   M  +      D    + +I  +   GLV
Sbjct: 98  P----DNYSYNTLLHALAVSSSLADARGLFDEMPVR------DSVTYNVMISSHANHGLV 147

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
           + A   F+LA         KD V W  ML  Y RNG  +E   L+ +     T+ D +++
Sbjct: 148 SLARHYFDLAPE-------KDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDAISW 196

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE--HYSCLVDLLCRAGELDKAWKLINE 358
             ++S     G++    E F+ M       PG +   ++ +V    R G++ +A +L + 
Sbjct: 197 NALMSGYVQWGKMSEARELFDRM-------PGRDVVSWNIMVSGYARRGDMVEARRLFDA 249

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIYVMLSNLYAKFC 417
              R      V  W A++S     G  E     A++  +  P  N   +  +   Y +  
Sbjct: 250 APVR-----DVFTWTAVVSGYAQNGMLE----EARRVFDAMPERNAVSWNAMVAAYIQRR 300

Query: 418 MWDEIGQLRELM 429
           M DE  +L  +M
Sbjct: 301 MMDEAKELFNMM 312



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 161/396 (40%), Gaps = 66/396 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +NV+IS    +G  L +L      H   +  +  A+  +   +  V++ R  +  
Sbjct: 129 RDSVTYNVMISSHANHG--LVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEAR 182

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
               +++ W       +AL+  Y +   + +A  +FD +P ++ V  N ++SGY      
Sbjct: 183 GLFNSRTEW--DAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR--- 237

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH----------------AY 212
              +E  RL  A  +  D FT +A++   A     E  R+V                 AY
Sbjct: 238 GDMVEARRLFDAAPV-RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAY 296

Query: 213 MIRKCCNLGNDVFMQ---------SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           + R+  +   ++F           ++++  Y + G++ +A  VF+           KD V
Sbjct: 297 IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ-------KDAV 349

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W +ML  Y + G  +E ++L+  M   G   +  AF  V+S C+    ++ G++     
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ----- 404

Query: 324 VHDYKLEPGPEHY-------SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +H   +  G   Y       + L+ +  + G ++ A     EM +R      V  W  ++
Sbjct: 405 LHGRLIRAG---YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER-----DVVSWNTMI 456

Query: 377 S--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +  A H  GK  L      +     P ++ +  +L+
Sbjct: 457 AGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 232/432 (53%), Gaps = 19/432 (4%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           + F + L+  YT+      +G        +  ++ + +  +IS + +NG P  AL+ ++ 
Sbjct: 333 VAFCNSLIQMYTSL---GRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYAL 389

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M +H +  D   + S+L A   +     G ++       G++  V V +AL+++YAK   
Sbjct: 390 MELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKH 449

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG-LDYDHFTLSALLR 195
           I  A  +F  +  K+ V  +++++G+C        L   R M  LG +  +  T  A L 
Sbjct: 450 IDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM--LGHVKPNSVTFIAALS 507

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           ACA   A   G+++HAY++R  C +G++ ++ ++L+++Y KCG  + A   F++      
Sbjct: 508 ACAATGALRSGKEIHAYVLR--CGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHS---- 561

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
               KDVV W  ML  +  +G     + L+  M+  G  PDEV FV ++ ACS  G V  
Sbjct: 562 ---EKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQ 618

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G E F  M   + + P  +HY+C+VDLL R G+L +A+ LIN M  +       ++WGAL
Sbjct: 619 GWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIK----PDAAVWGAL 674

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L+ C      ELG+LAA+  LEL+P++V  +V+L +LY     W ++ ++R+ M+EKGL+
Sbjct: 675 LNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLE 734

Query: 436 KDVGCSWIEVTG 447
           +D GCSW+EV G
Sbjct: 735 QDNGCSWVEVKG 746



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 171/343 (49%), Gaps = 24/343 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +NV++  + + G    AL  +  M   G+  D Y     L     + D R G++V
Sbjct: 160 RDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREV 219

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            AHV + G+   V V +AL+ +YAK   I  A  +FD + V + +  NA+++G+ E    
Sbjct: 220 HAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHEC 279

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GLEL   M    +  +  T++++  A   LS   F +++H + +++      DV   +
Sbjct: 280 EAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKR--GFAIDVAFCN 337

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY   G +  A ++F+    R+E    KD + WT+M+  Y +NG+  + +++Y  M
Sbjct: 338 SLIQMYTSLGRMGDAGKIFS----RME---TKDAMSWTAMISGYEKNGFPDKALEVYALM 390

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
            ++   PD+V   + ++AC+  G++ +GI+     +H+     G   Y    + L+++  
Sbjct: 391 ELHNVSPDDVTIASALAACACLGRLDVGIK-----LHELAQNKGFIRYVVVANALLEMYA 445

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA-CHDCGKFE 386
           ++  +DKA ++   M ++      V  W ++++  C +   FE
Sbjct: 446 KSKHIDKAIEVFKFMAEK-----DVVSWSSMIAGFCFNHRSFE 483



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 128/285 (44%), Gaps = 26/285 (9%)

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           +G+A++ +  +   I  A  +F ++P ++    N ++ GY +       L+L   M   G
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D +T   +LR C G+     GR+VHA+++R     G++V + ++L+ MY KCG +  
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLR--FGFGDEVDVLNALVTMYAKCGDIVA 250

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A +VF+       G    D + W +M+  +  N   +  ++L+  ML N  +P+ +   +
Sbjct: 251 ARKVFD-------GMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITS 303

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINE 358
           V  A     +V    E     +H + ++ G        + L+ +    G +  A K+ + 
Sbjct: 304 VTVASGMLSEVGFAKE-----MHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSR 358

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
           M  +   S     W A++S     G F    L     +EL  HNV
Sbjct: 359 METKDAMS-----WTAMISGYEKNG-FPDKALEVYALMEL--HNV 395


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 220/396 (55%), Gaps = 18/396 (4%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N +IS +  N     A+  F  +   G  +++  L   +         +  + +Q  
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNL 340

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
             K G +    V +AL  +Y +L  +  A  +FDE P K+    NA++SGY +  L    
Sbjct: 341 SLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400

Query: 172 LELVR-LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
           + L + +MP L    +  T++++L ACA L A   G+ VH  +  K   L ++V++ ++L
Sbjct: 401 ISLFQEMMPQLS--PNPVTVTSILSACAQLGALSIGKWVHGLI--KSERLESNVYVSTAL 456

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           ++MY KCG + +A Q+F+L        ++K+VV W +M+  YG +G+ KE +KL+  ML 
Sbjct: 457 VDMYAKCGSIVEARQLFDLM-------VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQ 509

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           +G  P  V F++++ ACSH+G V  G E F  M ++Y  +P  EHY+C+VD+L RAG+L 
Sbjct: 510 SGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLT 569

Query: 351 KAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            A + I  M L+ G      ++WGALL AC      E+  +A+++  +LDP NVG YV+L
Sbjct: 570 NALEFIERMPLEPGP-----AVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLL 624

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           SN+Y+    + +   +R+++K++ L K  GC+ IE+
Sbjct: 625 SNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEI 660



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 188/424 (44%), Gaps = 65/424 (15%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVH-----GIFLDTYALCSSLTASTSVKDARFGKQV 108
           FNV+I  F  NG P    K+  F++ H      +  D +    +++A++ ++D R G  +
Sbjct: 80  FNVLIRGFSDNGLP----KSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            AH    G  S++FVGSA++DLY K      A  +FD +P +++V  N ++SG+     +
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + +   M  +GL +D  TL+ +L A A L     G  +     +K   L +DV++ +
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKK--GLHSDVYVLT 253

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEA 287
            LI +Y KCG   K   +F+        +I++ D++ + +M+  Y  N   +  + L+  
Sbjct: 254 GLISLYSKCGKSCKGRILFD--------QIDQPDLISYNAMISGYTFNHETESAVTLFRE 305

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLL 343
           +L +G + +    V +I        ++L       ++ +  L+ G    P   + L  + 
Sbjct: 306 LLASGQRVNSSTLVGLIPVYLPFNHLQLS-----RLIQNLSLKIGIILQPSVSTALTTVY 360

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWG-----------------------------A 374
           CR  E+  A +L +E  ++   S +  + G                             +
Sbjct: 361 CRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTS 420

Query: 375 LLSACHDCGKFELGK----LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMK 430
           +LSAC   G   +GK    L   + LE    NV +   L ++YAK     E  QL +LM 
Sbjct: 421 ILSACAQLGALSIGKWVHGLIKSERLE---SNVYVSTALVDMYAKCGSIVEARQLFDLMV 477

Query: 431 EKGL 434
           +K +
Sbjct: 478 DKNV 481



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 157/338 (46%), Gaps = 18/338 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS F RN     +++ F  M   G+  D+  L + LTA   +++ R G  +
Sbjct: 177 RDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGI 236

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           Q   +K G  S V+V + LI LY+K        ++FD+I   + +  NA++SGY      
Sbjct: 237 QCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHET 296

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + L R + A G   +  TL  L+      +  +  R +    ++    L   V   +
Sbjct: 297 ESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSV--ST 354

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L  +Y +   V  A Q+F+ +         K +  W +M+  Y +NG     I L++ M
Sbjct: 355 ALTTVYCRLNEVQFARQLFDESPE-------KSLASWNAMISGYTQNGLTDRAISLFQEM 407

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            M    P+ V   +++SAC+  G + +G ++   ++   +LE      + LVD+  + G 
Sbjct: 408 -MPQLSPNPVTVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGS 465

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGK 384
           + +A +L + M+D+     +V  W A+++    H  GK
Sbjct: 466 IVEARQLFDLMVDK-----NVVTWNAMITGYGLHGHGK 498


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/400 (33%), Positives = 217/400 (54%), Gaps = 18/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +N +I  +        AL+ F  M V           S L  S S+      KQ+
Sbjct: 395 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQI 454

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G    +F GSALID+Y+K   + DA  +F+E+  K+ V  NA+  GY +    
Sbjct: 455 HGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLEN 514

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV--FM 226
              L+L   +       + FT +AL+ A + L++   G+Q H  +++    +G D   F+
Sbjct: 515 EEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVK----MGLDFCPFV 570

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L++MY KCG + +A ++FN         I +DVV W SM+  + ++G  +E + ++ 
Sbjct: 571 TNALVDMYAKCGSIEEARKMFN-------SSIWRDVVCWNSMISTHAQHGEAEEALGMFR 623

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M+  G +P+ V FV V+SACSH G+V+ G+ +F  M   + ++PG EHY+C+V LL R+
Sbjct: 624 EMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRS 682

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G+L +A + I +M        +  +W +LLSAC   G  ELGK AA+ A+  DP + G Y
Sbjct: 683 GKLFEAKEFIEKM----PIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSY 738

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           ++LSN++A   MW ++ ++R+ M    + K+ G SWIEV 
Sbjct: 739 ILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVN 778



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 162/319 (50%), Gaps = 19/319 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           +N + ++ ++S + + G    AL  F       G   + + L S + A T +     G Q
Sbjct: 91  KNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ 150

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +   V +SG+   V+VG++LID Y+K   I +A L+FD++  K +V    +++GY +   
Sbjct: 151 LHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGR 210

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
            A  LEL   M    +  D + +S++L AC+ L   E G+Q+HAY++R+   +  DV + 
Sbjct: 211 SAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM--DVSVV 268

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           + LI+ Y KC  V    ++F+         + K+++ WT+M+  Y +N +  E +KL+  
Sbjct: 269 NVLIDFYTKCNRVKAGRKLFDQM-------VVKNIISWTTMISGYMQNSFDWEAMKLFGE 321

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLL 343
           M   G KPD  A  +V+++C     ++ G +     VH Y ++   E      + L+D+ 
Sbjct: 322 MNRLGWKPDGFACTSVLTSCGSREALEQGRQ-----VHAYTIKANLESDEFVKNGLIDMY 376

Query: 344 CRAGELDKAWKLINEMLDR 362
            ++  L  A K+ + M ++
Sbjct: 377 AKSNLLIDAKKVFDVMAEQ 395



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 131/259 (50%), Gaps = 9/259 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L+ +  + +  +I+ + + G    +L+ F+ M    +  D Y + S L+A + ++    G
Sbjct: 190 LSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGG 249

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ A+V + G    V V + LID Y K   +     +FD++ VKN +    ++SGY + 
Sbjct: 250 KQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQN 309

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 ++L   M  LG   D F  +++L +C    A E GRQVHAY I+   NL +D F
Sbjct: 310 SFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIK--ANLESDEF 367

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +++ LI+MY K  L+  A +VF++          ++V+ + +M+  Y       E ++L+
Sbjct: 368 VKNGLIDMYAKSNLLIDAKKVFDVMAE-------QNVISYNAMIEGYSSQEKLSEALELF 420

Query: 286 EAMLMNGTKPDEVAFVTVI 304
             M +    P  + FV+++
Sbjct: 421 HEMRVRLFPPSLLTFVSLL 439



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 144/354 (40%), Gaps = 54/354 (15%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S L+  Y+ C + K+     +  + +N ++ + +N +   + ++     ALK +S +   
Sbjct: 471 SALIDVYSKCSYVKDA---RHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFS 527

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
               + +   + +TA++++   R G+Q    + K G     FV +AL+D+YAK   I +A
Sbjct: 528 RQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEA 587

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             MF+    ++ VC N+++S + +       L + R M   G+  ++ T  A+L AC+  
Sbjct: 588 RKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACS-- 645

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLEGEIN 259
                    HA                          G V   L  FN + G      I 
Sbjct: 646 ---------HA--------------------------GRVEDGLNHFNSMPGFG----IK 666

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
                +  ++ + GR+G   E  +  E M +   +P  + + +++SAC   G V+LG   
Sbjct: 667 PGTEHYACVVSLLGRSGKLFEAKEFIEKMPI---EPAAIVWRSLLSACRIAGNVELGKYA 723

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
            E  +     + G   Y  L ++    G     W  + ++ DR   S  V   G
Sbjct: 724 AEMAISTDPKDSGS--YILLSNIFASKG----MWADVKKVRDRMDSSEVVKEPG 771



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 86/181 (47%), Gaps = 24/181 (13%)

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +H  +I     L +D F+ + LI +  K   V  A  VF+   H       K+++ W+SM
Sbjct: 49  IHGQII--VSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPH-------KNLITWSSM 99

Query: 269 LGVYGRNGYFKEVIKLY-EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           + +Y + GY +E + ++ +    +G  P+E    +VI AC+  G V+ G +     +H +
Sbjct: 100 VSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ-----LHGF 154

Query: 328 KLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
            +  G +      + L+D   + G +++A  + +++ ++     +   W  +++    CG
Sbjct: 155 VVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEK-----TAVTWTTIIAGYTKCG 209

Query: 384 K 384
           +
Sbjct: 210 R 210


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/388 (33%), Positives = 210/388 (54%), Gaps = 12/388 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I+ + ++G    AL  F  M    +  +   + + L+A         G  V
Sbjct: 227 RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWV 286

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           ++ +   G  S++ + +ALID+Y+K   +  A  +F+ I  K+ +  N ++ GY     +
Sbjct: 287 RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSY 346

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L R M    ++ +  T  ++L ACA L A + G+ +HAY+ +K   L N   + +
Sbjct: 347 KEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTN-TSLWT 405

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY KCG +  A QVF        G   K +  W +M+     +G+    ++L+  M
Sbjct: 406 SLIDMYAKCGNIEAAKQVF-------AGMKPKSLGSWNAMISGLAMHGHANMALELFRQM 458

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G +PD++ FV V+SACSH G V+LG + F  MV DY + P  +HY C++DLL RAG 
Sbjct: 459 RDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGL 518

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            D+A  L+  M  +  G    ++WG+LL AC   G  ELG+ AA+   EL+P N G YV+
Sbjct: 519 FDEAEALMKNMEMKPDG----AIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVL 574

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           LSN+YA    WD++ ++R  + +KG+KK
Sbjct: 575 LSNIYATAGRWDDVARIRTKLNDKGMKK 602



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 202/466 (43%), Gaps = 86/466 (18%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N   +N +I     + SP+ A+  +  M + G+  ++Y     L +   V   + GKQ+ 
Sbjct: 96  NQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIH 155

Query: 110 AHVTKSGWLSSVFVGSALIDLYAK--------LLL-----------------------IH 138
            HV K G  S  FV ++LI++YA+        L+                        + 
Sbjct: 156 GHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLD 215

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           DA  +F+EIPV+++V  NA+++GY ++  +   L   + M    +  +  T+  +L ACA
Sbjct: 216 DARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACA 275

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
              + E G  V +++  +   LG+++ + ++LI+MY KCG + KA  +F       EG  
Sbjct: 276 QSGSLELGNWVRSWI--EDHGLGSNLRLVNALIDMYSKCGDLDKARDLF-------EGIC 326

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            KD++ W  M+G Y     +KE + L+  M  +  +P++V FV+++ AC++ G + LG  
Sbjct: 327 EKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKW 386

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA--------------W----------- 353
              ++   +        ++ L+D+  + G ++ A              W           
Sbjct: 387 IHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHG 446

Query: 354 ------KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
                 +L  +M D G     ++  G +LSAC   G  ELG+      +E        Y 
Sbjct: 447 HANMALELFRQMRDEGFEPDDITFVG-VLSACSHAGLVELGRQCFSSMVE-------DYD 498

Query: 408 MLSNLYAKFCMWDEIG------QLRELMKEKGLKKDVGCSWIEVTG 447
           +   L    CM D +G      +   LMK   +K D G  W  + G
Sbjct: 499 ISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPD-GAIWGSLLG 543



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 180/403 (44%), Gaps = 65/403 (16%)

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA--KLLLIHDAELMFDEIPV 149
           SLT  ++ K  +  KQ+ + + K+G  ++ F  S LI+  A      +  A L+F+ I  
Sbjct: 35  SLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQ 94

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
            N    N ++ G   +    G ++    M   G++ + +T   LL++CA + A + G+Q+
Sbjct: 95  PNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQI 154

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEG 256
           H ++++    L +D F+ +SLI MY + G +  A  VF+             + G+ L G
Sbjct: 155 HGHVLK--LGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG 212

Query: 257 EIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
            ++           +D V W +M+  Y ++G F+E +  ++ M      P+E   VTV+S
Sbjct: 213 CLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLS 272

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
           AC+ +G ++LG     W + D+ L       + L+D+  + G+LDKA  L   + ++   
Sbjct: 273 ACAQSGSLELGNWVRSW-IEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDII 331

Query: 366 SSSVSMWG------------------------------ALLSACHDCGKFELGK----LA 391
           S +V + G                              ++L AC   G  +LGK      
Sbjct: 332 SWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYI 391

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
            +K L L   N  ++  L ++YAK    +   Q+   MK K L
Sbjct: 392 DKKFLGLT--NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSL 432


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 220/403 (54%), Gaps = 19/403 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +++ + + G     L+TF  M+   +    + +   L+    + D   G+ +
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRII 259

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G+ S V V ++LID+Y K   I DA  +F+ +  K+    N+++S + +    
Sbjct: 260 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH 319

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG------N 222
            G L L+  M   G+  D  T++ +L AC+ L+A   GR++H YMI     LG      +
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI--VSGLGKDGKDID 377

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV +++++I+MY KCG +  A  VF       E   NKDV  W  M+  YG +GY  E +
Sbjct: 378 DVLLKNAVIDMYAKCGSMRDAHLVF-------ERMSNKDVASWNIMIMGYGMHGYGNEAL 430

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +++  M     KPDEV FV V+SACSH G V  G  +   M   Y + P  EHY+C++D+
Sbjct: 431 EMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDM 490

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG+LD+A++L   M       ++  +W ALL+AC       L ++AAQ+  EL+P +
Sbjct: 491 LGRAGQLDEAYELALTMPIE----ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEH 546

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G YV++SN+Y     ++E+ ++R  M+++ ++K  GCSWIE+
Sbjct: 547 CGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIEL 589



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 170/366 (46%), Gaps = 20/366 (5%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N   FN +IS F  NG P    + +  M   G+  D +    ++ A   V +    K++ 
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIH 159

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
             + K G    VF+GSAL++ Y K  L+  A++ F+E+P+++ V  NA+++GY +   + 
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             LE  R M    +    FT++ +L   A +     GR +H + ++   + G  V + +S
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSG--VAVSNS 277

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           LI+MYGKC  +  AL++F +          KD+  W S++ V+ + G     ++L + ML
Sbjct: 278 LIDMYGKCKCIEDALEIFEMMR-------EKDIFSWNSIVSVHEQCGDHDGTLRLLDRML 330

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL-----VDLLC 344
             G +PD V   TV+ ACSH   +  G E   +M+     + G +    L     +D+  
Sbjct: 331 GAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYA 390

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           + G +  A  +   M ++   S ++ + G      H  G   L   +    ++L P  V 
Sbjct: 391 KCGSMRDAHLVFERMSNKDVASWNIMIMG---YGMHGYGNEALEMFSRMCEVQLKPDEVT 447

Query: 405 IYVMLS 410
              +LS
Sbjct: 448 FVGVLS 453



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 141/298 (47%), Gaps = 27/298 (9%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           +SL AS   K+   GK++ +++  +G+L+S    ++LI++Y+K   ++ A  +F +   +
Sbjct: 42  ASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHE 101

Query: 151 NSVCA-NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
            +V A NA++SG+        G E  + M   G+  D FT    ++AC  L   E  +++
Sbjct: 102 INVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVLEI-KKI 158

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H  + +    L  DVF+ S+L+  Y K GL+  A   F       E    +DVVLW +M+
Sbjct: 159 HGLLFKFGLEL--DVFIGSALVNCYLKFGLMEHAQVAF-------EELPIRDVVLWNAMV 209

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
             Y + G F+ V++ +  M      P       V+S  +  G +  G      ++H + +
Sbjct: 210 NGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNG-----RIIHGFAM 264

Query: 330 EPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           + G +      + L+D+  +   ++ A ++   M ++      +  W +++S    CG
Sbjct: 265 KMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREK-----DIFSWNSIVSVHEQCG 317



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 17/203 (8%)

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
           Y+  T  A L+A A       G+++H+YM+       N     +SLI MY KC  +  AL
Sbjct: 35  YNLTTCIASLQASAHHKNLSKGKEIHSYMLIN--GFLNSPLSITSLINMYSKCNQMNFAL 92

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            +F+   H    EIN  V  + +++  +  NG+ +E  + Y+ M   G  PD+  F   I
Sbjct: 93  SIFSDPTH----EIN--VFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAI 146

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
            AC       L I+    ++  + LE      S LV+   + G ++ A     E+  R  
Sbjct: 147 KACLDV----LEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR-- 200

Query: 365 GSSSVSMWGALLSACHDCGKFEL 387
               V +W A+++     G+FE+
Sbjct: 201 ---DVVLWNAMVNGYAQIGQFEM 220


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 222/421 (52%), Gaps = 38/421 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR--FGK 106
           R+ + +N+++S + R G  + A + F    V  +F  T A+ S    +  +++AR  F  
Sbjct: 222 RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWT-AVVSGYAQNGMLEEARRVFDA 280

Query: 107 QVQAHVTKSGWLSSVFVGSALIDL----------------------YAKLLLIHDAELMF 144
             + +      + + ++   ++D                       YA+  ++ +A+ +F
Sbjct: 281 MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 340

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +P K++V   A+L+ Y +       L+L   M   G   +    + +L  CA ++A E
Sbjct: 341 DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALE 400

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G Q+H  +IR    +G   F+ ++L+ MY KCG +  A   F       E    +DVV 
Sbjct: 401 CGMQLHGRLIRAGYGVG--CFVGNALLAMYFKCGNMEDARNAF-------EEMEERDVVS 451

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +M+  Y R+G+ KE +++++ M    TKPD++  V V++ACSH+G V+ GI YF  M 
Sbjct: 452 WNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMH 511

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           HD+ +   PEHY+C++DLL RAG L +A  L+ +M          +MWGALL A      
Sbjct: 512 HDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM----PFEPDSTMWGALLGASRIHRN 567

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            ELG+ AA+K  EL+P N G+YV+LSN+YA    W +  ++R +M+E+G+KK  G SWIE
Sbjct: 568 PELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIE 627

Query: 445 V 445
           V
Sbjct: 628 V 628



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 129/312 (41%), Gaps = 40/312 (12%)

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           V   +  I  + +   + DAE +F  +P +++   NA+L+GY           L R +P 
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
                D+++ + LL A A  S+    R +   M  +      D    + +I  +   GLV
Sbjct: 98  P----DNYSYNTLLHALAVSSSLADARGLFDEMPVR------DSVTYNVMISSHANHGLV 147

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
           + A   F+LA         KD V W  ML  Y RNG  +E   L+ +     T+ D +++
Sbjct: 148 SLARHYFDLAPE-------KDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDVISW 196

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE--HYSCLVDLLCRAGELDKAWKLINE 358
             ++S     G++    E F+ M       PG +   ++ +V    R G++ +A +L + 
Sbjct: 197 NALMSGYVQWGKMSEARELFDRM-------PGRDVVSWNIMVSGYARRGDMVEARRLFDA 249

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIYVMLSNLYAKFC 417
              R      V  W A++S     G  E     A++  +  P  N   +  +   Y +  
Sbjct: 250 APVR-----DVFTWTAVVSGYAQNGMLE----EARRVFDAMPERNAVSWNAMVAAYIQRR 300

Query: 418 MWDEIGQLRELM 429
           M DE  +L  +M
Sbjct: 301 MMDEAKELFNMM 312



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 162/396 (40%), Gaps = 66/396 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +NV+IS    +G  L +L      H   +  +  A+  +   +  V++ R  +  
Sbjct: 129 RDSVTYNVMISSHANHG--LVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEAR 182

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
               +++ W   V   +AL+  Y +   + +A  +FD +P ++ V  N ++SGY      
Sbjct: 183 GLFNSRTEW--DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR--- 237

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH----------------AY 212
              +E  RL  A  +  D FT +A++   A     E  R+V                 AY
Sbjct: 238 GDMVEARRLFDAAPV-RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAY 296

Query: 213 MIRKCCNLGNDVFMQ---------SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           + R+  +   ++F           ++++  Y + G++ +A  VF+           KD V
Sbjct: 297 IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ-------KDAV 349

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W +ML  Y + G  +E ++L+  M   G   +  AF  V+S C+    ++ G++     
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ----- 404

Query: 324 VHDYKLEPGPEHY-------SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +H   +  G   Y       + L+ +  + G ++ A     EM +R      V  W  ++
Sbjct: 405 LHGRLIRAG---YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER-----DVVSWNTMI 456

Query: 377 S--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +  A H  GK  L      +     P ++ +  +L+
Sbjct: 457 AGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/407 (33%), Positives = 230/407 (56%), Gaps = 20/407 (4%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-------GIFLDTYALCSSLTASTSVK 100
           P   + +N +IS +  N  PL+A+  F  M           + ++   L S ++  +   
Sbjct: 116 PNPTICYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVAT 175

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
               G  +     + G+++ + V ++L+ +Y K   +  A  +FDE+ V++ +  NA++S
Sbjct: 176 HLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMIS 235

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY +       LE+   M   G+  D  TL  ++ ACA L A   GR+V   + R+    
Sbjct: 236 GYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERR--GF 293

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
           G + F++++L+ MY +CG +T+A +VF+ +G        K VV WT+++G YG +G+ + 
Sbjct: 294 GCNPFLRNALVNMYARCGNLTRAREVFDRSGE-------KSVVSWTAIIGGYGIHGHGEV 346

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            ++L++ M+ +  +PD+  FV+V+SACSH G    G+EYF+ M   Y L+PGPEHYSC+V
Sbjct: 347 ALELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVV 406

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RAG L++A  LI  M  +  G    ++WGALL AC      E+ +LA Q  +EL+P
Sbjct: 407 DLLGRAGRLEEAVNLIKSMKVKPDG----AVWGALLGACKIHKNAEIAELAFQHVVELEP 462

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            N+G YV+LSN+Y      + + ++R +M+E+ L+KD G S++E  G
Sbjct: 463 TNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKDPGYSYVEYKG 509



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 134/277 (48%), Gaps = 23/277 (8%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
             Q+ AHV ++G     +  S+LI+ YAK  L H A  +FDE+P   ++C NA++SGY  
Sbjct: 73  ASQLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMP-NPTICYNAMISGYSF 131

Query: 165 AKLWAGGLELVRLM---PALGLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
                  + L R M      GLD D      TL +L+  C+  +    G  +H   +R  
Sbjct: 132 NSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVR-- 189

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
                D+ + +SL+ MY KCG V  A +VF+         + +D++ W +M+  Y +NG+
Sbjct: 190 FGFVTDLAVANSLVTMYVKCGEVELARKVFDEM-------LVRDLITWNAMISGYAQNGH 242

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
            + V+++Y  M ++G   D V  + V+SAC++ G   +G E     +        P   +
Sbjct: 243 ARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVER-EIERRGFGCNPFLRN 301

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            LV++  R G L +A     E+ DR  G  SV  W A
Sbjct: 302 ALVNMYARCGNLTRA----REVFDRS-GEKSVVSWTA 333


>gi|224140139|ref|XP_002323442.1| predicted protein [Populus trichocarpa]
 gi|222868072|gb|EEF05203.1| predicted protein [Populus trichocarpa]
          Length = 526

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 201/362 (55%), Gaps = 14/362 (3%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
            D   L +++++  S +D R G Q       +G++++ ++GS+L+  Y K   + +A  +
Sbjct: 126 FDASVLSNAVSSCASTRDLRGGIQYHCLAISAGFIANAYIGSSLVTFYGKCGELDNAYKV 185

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           F E+PV+N V   A++SG+ +       L+L  LM    L  + FT ++LL AC G  A 
Sbjct: 186 FKEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTFTSLLSACTGSGAL 245

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
             GR  H  +I       + + + ++L+ MY KCG V  A  +F       E  + KD+V
Sbjct: 246 GQGRSAHCQIIEM--GFVSYLHIANALVSMYCKCGNVEDAFHIF-------ENMVGKDIV 296

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W SM+  Y ++G   + I L+E M   G KPD + F+ V+S+C H G V+ G  YF  M
Sbjct: 297 SWNSMIAGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGFVEGGRNYFNSM 356

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           V +Y ++P  +HYSC+VDLL RAG L++A   I  M      S +  +WG+L+S+C   G
Sbjct: 357 V-EYGVKPELDHYSCIVDLLGRAGLLEEAQYFIERM----PVSPNAVIWGSLVSSCRLHG 411

Query: 384 KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
              +G  AA+  L L+P     +V L+NLYA    WD+  ++R+LMK++ LK + GCSWI
Sbjct: 412 SVWIGIQAAENTLLLEPECAATHVQLANLYASVGFWDQAARVRKLMKDRRLKTNPGCSWI 471

Query: 444 EV 445
           E+
Sbjct: 472 EI 473



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 133/331 (40%), Gaps = 52/331 (15%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G L N  K       RN + +  +IS F ++      L+ +  M    +  + +   S L
Sbjct: 177 GELDNAYKVFKEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTFTSLL 236

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           +A T       G+     + + G++S + + +AL+ +Y K   + DA  +F+ +  K+ V
Sbjct: 237 SACTGSGALGQGRSAHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFHIFENMVGKDIV 296

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N++++GY +  L   G+ L   M + G+  D  T   +L +C      E GR     M
Sbjct: 297 SWNSMIAGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGFVEGGRNYFNSM 356

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           +                   YG                      +  ++  ++ ++ + G
Sbjct: 357 VE------------------YG----------------------VKPELDHYSCIVDLLG 376

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-- 331
           R G  +E     E M ++   P+ V + +++S+C   G V +GI+  E   +   LEP  
Sbjct: 377 RAGLLEEAQYFIERMPVS---PNAVIWGSLVSSCRLHGSVWIGIQAAE---NTLLLEPEC 430

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
              H   L +L    G  D+A ++   M DR
Sbjct: 431 AATHVQ-LANLYASVGFWDQAARVRKLMKDR 460



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 25/238 (10%)

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
           A  L +D   LS  + +CA       G Q H   I        + ++ SSL+  YGKCG 
Sbjct: 121 ATSLSFDASVLSNAVSSCASTRDLRGGIQYHCLAI--SAGFIANAYIGSSLVTFYGKCGE 178

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           +  A +VF     R       +VV WT+++  + ++      ++LY  M  +  KP++  
Sbjct: 179 LDNAYKVFKEMPVR-------NVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFT 231

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKL 355
           F +++SAC+ +G +  G        H   +E G   Y    + LV + C+ G ++ A+ +
Sbjct: 232 FTSLLSACTGSGALGQGRS-----AHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFHI 286

Query: 356 INEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
              M+ +      +  W ++++  A H      +G     K+  + P  +    +LS+
Sbjct: 287 FENMVGK-----DIVSWNSMIAGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSS 339


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/401 (34%), Positives = 210/401 (52%), Gaps = 15/401 (3%)

Query: 48  PR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PR N + +N +I+ +   G     ++    M+  G       L S + AS+     R GK
Sbjct: 269 PRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGK 328

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +  ++ ++     +F+  +LID Y K   +  AE +F  I     V  N ++SG+    
Sbjct: 329 FIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVG 388

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L +   M    +  D  T S+ L AC+ L+A + GR++H  +I       N++ M
Sbjct: 389 NHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLE-ANEIVM 447

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
             +L++MY KCG V +A ++F    H+L     +D+V WTSM+  YG +G   E ++L++
Sbjct: 448 -GALLDMYAKCGDVDEARKLF----HQLP---KRDLVSWTSMIFAYGSHGQASEALRLFD 499

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M     + D V F+ V+SACSH G V  G  YF  MV  Y ++PG EHYSCL+DLL RA
Sbjct: 500 EMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRA 559

Query: 347 GELDKAWKLINEMLDRGHGS-SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           G L +A+    E+L R   + S + +   L SAC     F LG    +  +E+DP +   
Sbjct: 560 GRLHEAY----EILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDPST 615

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           Y++LSN+YA    WDE+ ++R  MKE GLKK  GCSWIE+ 
Sbjct: 616 YILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEIN 656



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 175/364 (48%), Gaps = 21/364 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVI 58
           +H H  +TGL  I  +   S LM  Y  C          + +K  +    R+   +N VI
Sbjct: 128 IHNHLLKTGL--IWDVFVGSSLMNMYAKCDQ------FVDAIKLFDEFPQRDVGCWNAVI 179

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
           S + ++G    ALKTF  M   G   ++      +++ T + +   GK+V   + +   L
Sbjct: 180 SCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRIL 239

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
              FV SAL+D+Y K   +  A+ +F++IP KN++  NA+++GY         +EL+  M
Sbjct: 240 LDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRM 299

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
              G      TL++++ A +       G+ +H Y++R   ++  D+F+  SLI+ Y KCG
Sbjct: 300 NDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDV--DIFIDVSLIDFYFKCG 357

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            V+ A  +F             +VV W  M+  +   G   + + +Y+ M  +  KPD +
Sbjct: 358 YVSSAETIFRTIS-------KNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDAL 410

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
            F + +SACS    +  G E   + + ++KLE        L+D+  + G++D+A KL ++
Sbjct: 411 TFSSTLSACSQLAALDKGRE-LHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQ 469

Query: 359 MLDR 362
           +  R
Sbjct: 470 LPKR 473



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 159/332 (47%), Gaps = 16/332 (4%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYALCSSLTASTSVKDARFGK 106
           P +   +N ++S +  N   + AL+ F  ++ +  +  D Y     L A   +    +G+
Sbjct: 67  PLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGR 126

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++  H+ K+G +  VFVGS+L+++YAK     DA  +FDE P ++  C NA++S Y +  
Sbjct: 127 RIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDG 186

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L+    M  LG + +  T + ++ +C  L   E G++VH  +I +   L  D F+
Sbjct: 187 KAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILL--DAFV 244

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            S+L++MYGKCG +  A +VF       E    K+ + W +M+  Y   G  +  I+L  
Sbjct: 245 LSALVDMYGKCGCLEMAKEVF-------EKIPRKNAITWNAMITGYSLKGDSRSCIELLM 297

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M   GTKP  +   ++I A S + Q++ G ++    +   +++        L+D   + 
Sbjct: 298 RMNDEGTKPTLMTLTSIIYASSRSVQLRHG-KFIHGYILRNRIDVDIFIDVSLIDFYFKC 356

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           G +  A     E + R    + V  W  ++S 
Sbjct: 357 GYVSSA-----ETIFRTISKNEVVSWNVMISG 383


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 222/421 (52%), Gaps = 38/421 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR--FGK 106
           R+ + +N+++S + R G  + A + F    V  +F  T A+ S    +  +++AR  F  
Sbjct: 222 RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWT-AVVSGYAQNGMLEEARRVFDA 280

Query: 107 QVQAHVTKSGWLSSVFVGSALIDL----------------------YAKLLLIHDAELMF 144
             + +      + + ++   ++D                       YA+  ++ +A+ +F
Sbjct: 281 MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 340

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +P K++V   A+L+ Y +       L+L   M   G   +    + +L  CA ++A E
Sbjct: 341 DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALE 400

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G Q+H  +IR    +G   F+ ++L+ MY KCG +  A   F       E    +DVV 
Sbjct: 401 CGMQLHGRLIRAGYGVG--CFVGNALLAMYFKCGNMEDARNAF-------EEMEERDVVS 451

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +M+  Y R+G+ KE +++++ M    TKPD++  V V++ACSH+G V+ GI YF  M 
Sbjct: 452 WNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMH 511

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           HD+ +   PEHY+C++DLL RAG L +A  L+ +M          +MWGALL A      
Sbjct: 512 HDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM----PFEPDSTMWGALLGASRIHRN 567

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            ELG+ AA+K  EL+P N G+YV+LSN+YA    W +  ++R +M+E+G+KK  G SWIE
Sbjct: 568 PELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIE 627

Query: 445 V 445
           V
Sbjct: 628 V 628



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 129/312 (41%), Gaps = 40/312 (12%)

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           V   +  I  + +   + DAE +F  +P +++   NA+L+GY           L R +P 
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
                D+++ + LL A A  S+    R +   M  +      D    + +I  +   GLV
Sbjct: 98  P----DNYSYNTLLHALAVSSSLADARGLFDEMPVR------DSVTYNVMISSHANHGLV 147

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
           + A   F+LA         KD V W  ML  Y RNG  +E   L+ +     T+ D +++
Sbjct: 148 SLARHYFDLAPE-------KDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDVISW 196

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE--HYSCLVDLLCRAGELDKAWKLINE 358
             ++S     G++    E F+ M       PG +   ++ +V    R G++ +A +L + 
Sbjct: 197 NALMSGYVQWGKMSEARELFDRM-------PGRDVVSWNIMVSGYARRGDMVEARRLFDA 249

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIYVMLSNLYAKFC 417
              R      V  W A++S     G  E     A++  +  P  N   +  +   Y +  
Sbjct: 250 APVR-----DVFTWTAVVSGYAQNGMLE----EARRVFDAMPERNAVSWNAMVAAYIQRR 300

Query: 418 MWDEIGQLRELM 429
           M DE  +L  +M
Sbjct: 301 MMDEAKELFNMM 312



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 162/396 (40%), Gaps = 66/396 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +NV+IS    +G  L +L      H   +  +  A+  +   +  V++ R  +  
Sbjct: 129 RDSVTYNVMISSHANHG--LVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEAR 182

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
               +++ W   V   +AL+  Y +   + +A  +FD +P ++ V  N ++SGY      
Sbjct: 183 GLFNSRTEW--DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR--- 237

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH----------------AY 212
              +E  RL  A  +  D FT +A++   A     E  R+V                 AY
Sbjct: 238 GDMVEARRLFDAAPV-RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAY 296

Query: 213 MIRKCCNLGNDVFMQ---------SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           + R+  +   ++F           ++++  Y + G++ +A  VF+           KD V
Sbjct: 297 IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ-------KDAV 349

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W +ML  Y + G  +E ++L+  M   G   +  AF  V+S C+    ++ G++     
Sbjct: 350 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ----- 404

Query: 324 VHDYKLEPGPEHY-------SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +H   +  G   Y       + L+ +  + G ++ A     EM +R      V  W  ++
Sbjct: 405 LHGRLIRAG---YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER-----DVVSWNTMI 456

Query: 377 S--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +  A H  GK  L      +     P ++ +  +L+
Sbjct: 457 AGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 232/432 (53%), Gaps = 19/432 (4%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           + F + L+  YT+      +G        +  ++ + +  +IS + +NG P  AL+ ++ 
Sbjct: 333 VAFCNSLIQMYTSL---GRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYAL 389

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M +H +  D   + S+L A   +     G ++       G++  V V +AL+++YAK   
Sbjct: 390 MELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKH 449

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG-LDYDHFTLSALLR 195
           I  A  +F  +  K+ V  +++++G+C        L   R M  LG +  +  T  A L 
Sbjct: 450 IDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM--LGHVKPNSVTFIAALS 507

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           ACA   A   G+++HAY++R  C +G++ ++ ++L+++Y KCG  + A   F++      
Sbjct: 508 ACAATGALRSGKEIHAYVLR--CGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHS---- 561

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
               KDVV W  ML  +  +G     + L+  M+  G  PDEV FV ++ ACS  G V  
Sbjct: 562 ---EKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQ 618

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G E F  M   + + P  +HY+C+VDLL R G+L +A+ LIN M  +       ++WGAL
Sbjct: 619 GWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIK----PDAAVWGAL 674

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L+ C      ELG+LAA+  LEL+P++V  +V+L +LY     W ++ ++R+ M+EKGL+
Sbjct: 675 LNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLE 734

Query: 436 KDVGCSWIEVTG 447
           +D GCSW+EV G
Sbjct: 735 QDNGCSWVEVKG 746



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 171/343 (49%), Gaps = 24/343 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +NV++  + + G    AL  +  M   G+  D Y     L     + D R G++V
Sbjct: 160 RDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREV 219

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            AHV + G+   V V +AL+ +YAK   I  A  +FD + V + +  NA+++G+ E    
Sbjct: 220 HAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHEC 279

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GLEL   M    +  +  T++++  A   LS   F +++H + +++      DV   +
Sbjct: 280 EAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKR--GFAIDVAFCN 337

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SLI+MY   G +  A ++F+    R+E    KD + WT+M+  Y +NG+  + +++Y  M
Sbjct: 338 SLIQMYTSLGRMGDAGKIFS----RME---TKDAMSWTAMISGYEKNGFPDKALEVYALM 390

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
            ++   PD+V   + ++AC+  G++ +GI+     +H+     G   Y    + L+++  
Sbjct: 391 ELHNVSPDDVTIASALAACACLGRLDVGIK-----LHELAQNKGFIRYVVVANALLEMYA 445

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA-CHDCGKFE 386
           ++  +DKA ++   M ++      V  W ++++  C +   FE
Sbjct: 446 KSKHIDKAIEVFKFMAEK-----DVVSWSSMIAGFCFNHRSFE 483



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 128/285 (44%), Gaps = 26/285 (9%)

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           +G+A++ +  +   I  A  +F ++P ++    N ++ GY +       L+L   M   G
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D +T   +LR C G+     GR+VHA+++R     G++V + ++L+ MY KCG +  
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLR--FGFGDEVDVLNALVTMYAKCGDIVA 250

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A +VF+       G    D + W +M+  +  N   +  ++L+  ML N  +P+ +   +
Sbjct: 251 ARKVFD-------GMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITS 303

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINE 358
           V  A     +V    E     +H + ++ G        + L+ +    G +  A K+ + 
Sbjct: 304 VTVASGMLSEVGFAKE-----MHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSR 358

Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
           M  +   S     W A++S     G F    L     +EL  HNV
Sbjct: 359 METKDAMS-----WTAMISGYEKNG-FPDKALEVYALMEL--HNV 395


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/395 (32%), Positives = 214/395 (54%), Gaps = 14/395 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +NVVIS + +      +L  F  M   G     +   + L+ + ++   + G+QV   
Sbjct: 311 VSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQ 370

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
              +   S + VG++L+D+YAK  +  +AEL+F  +  +++V   AL+SGY +  L   G
Sbjct: 371 AIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAG 430

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L+L   M    L  D  T + +L+A AG ++   G+Q+HA++IR   NL N VF  S L+
Sbjct: 431 LKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIR-SGNLEN-VFSGSGLV 488

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KCG +  A+QVF       E   +++ V W +++  Y  NG  +  I  +  M+ +
Sbjct: 489 DMYAKCGSIKDAVQVF-------EEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQS 541

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G +PD V+ + V+ ACSH G V+ G E+F+ M   Y + P  +HY+C++DLL R G   +
Sbjct: 542 GLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAE 601

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIYVMLS 410
           A KL++EM           MW ++L+AC       L + AA++   ++   +   YV +S
Sbjct: 602 AEKLMDEM----PFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMS 657

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           N+YA    W+ +  +++ M+E+G+KK    SW+EV
Sbjct: 658 NIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEV 692



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 164/359 (45%), Gaps = 17/359 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + FN +I+ + ++G    A+  F  M   G     +     L A   + D   G+Q+
Sbjct: 207 KDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQL 266

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                 +G+     VG+ ++  Y+K   + +   +F+E+P  + V  N ++S Y +A+ +
Sbjct: 267 HGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQY 326

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L R M  +G D  +F  + +L   A LS+ + GRQVH   I    +  + + + +
Sbjct: 327 EESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATAD--SILHVGN 384

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++MY KC +  +A  +F     R         V WT+++  Y + G     +KL+  M
Sbjct: 385 SLVDMYAKCEMFDEAELIFKSLSQR-------STVSWTALISGYVQKGLHGAGLKLFTKM 437

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                + D+  F TV+ A +    + LG +   +++    LE      S LVD+  + G 
Sbjct: 438 RGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGS 496

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVGI 405
           +  A ++  EM DR   S     W AL+SA  D G  E    A  K ++  L P +V I
Sbjct: 497 IKDAVQVFEEMPDRNAVS-----WNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSI 550



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 132/321 (41%), Gaps = 43/321 (13%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            K L+ R+ + +  +IS + + G     LK F+ M    +  D     + L AS      
Sbjct: 403 FKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASL 462

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GKQ+ A + +SG L +VF GS L+D+YAK   I DA  +F+E+P +N+V  NAL+S Y
Sbjct: 463 LLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAY 522

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       +     M   GL  D  ++  +L AC+                        
Sbjct: 523 ADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACS------------------------ 558

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
                         CG V +  + F  A   + G I      +  ML + GRNG F E  
Sbjct: 559 -------------HCGFVEQGTEFFQ-AMSPIYG-ITPKKKHYACMLDLLGRNGRFAEAE 603

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           KL + M     +PDE+ + +V++AC       L     E +    KL      Y  + ++
Sbjct: 604 KLMDEMPF---EPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAA-YVSMSNI 659

Query: 343 LCRAGELDKAWKLINEMLDRG 363
              AG+ +    +   M +RG
Sbjct: 660 YAAAGKWENVRHVKKAMRERG 680



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 124/277 (44%), Gaps = 25/277 (9%)

Query: 107 QVQAHVTKSGWLSSVF--VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           QV A   K G+ +++F  V + L+  Y ++  +  A ++F+EI  K+SV  N L++GY +
Sbjct: 162 QVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEK 221

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             L+   + L   M   G     FT S +L+A  GL     G+Q+H   +        D 
Sbjct: 222 DGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSV--TTGFSRDA 279

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIK 283
            + + ++  Y K   V +   +FN        E+ + D V +  ++  Y +   ++E + 
Sbjct: 280 SVGNQILHFYSKHDRVLETRNLFN--------EMPELDFVSYNVVISSYSQAEQYEESLN 331

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV---HDYKLEPGPEHYSCLV 340
           L+  M   G       F T++S  ++   +++G +     +    D  L  G    + LV
Sbjct: 332 LFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVG----NSLV 387

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           D+  +    D+A  +   +  R    S+VS W AL+S
Sbjct: 388 DMYAKCEMFDEAELIFKSLSQR----STVS-WTALIS 419



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 130/329 (39%), Gaps = 41/329 (12%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           + +I  Y K+  +  A  +FD +P +  V    L+  Y     +    +L R M      
Sbjct: 79  NTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTL 138

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D+ T + LL  C          QVHA+ ++       ++F+    + +   C      +
Sbjct: 139 PDYVTFTTLLPGCNDAVPQNAVGQVHAFAVK--LGFDTNLFLTVCNVLLKSYC-----EV 191

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           +  +LA    E  ++KD V + +++  Y ++G + E I L+  M  +G KP +  F  V+
Sbjct: 192 RRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVL 251

Query: 305 SAC---------------------SHTGQVKLGIEYFEWMVHDYKLEPG------PE--- 334
            A                      S    V   I +F +  HD  LE        PE   
Sbjct: 252 KAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHF-YSKHDRVLETRNLFNEMPELDF 310

Query: 335 -HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
             Y+ ++    +A + +++  L  EM   G    +   +  +LS   +    ++G+    
Sbjct: 311 VSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFP-FATMLSIAANLSSLQVGRQVHC 369

Query: 394 KALELDPHNV-GIYVMLSNLYAKFCMWDE 421
           +A+     ++  +   L ++YAK  M+DE
Sbjct: 370 QAIVATADSILHVGNSLVDMYAKCEMFDE 398


>gi|242096420|ref|XP_002438700.1| hypothetical protein SORBIDRAFT_10g024650 [Sorghum bicolor]
 gi|241916923|gb|EER90067.1| hypothetical protein SORBIDRAFT_10g024650 [Sorghum bicolor]
          Length = 431

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 204/366 (55%), Gaps = 18/366 (4%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           TYAL   L    + +D R GK++ A +  +G+  S ++ + L+  Y K+  +  A+ +FD
Sbjct: 37  TYALL--LQECVNRRDVRLGKRIHARMVATGFRCSAYIATKLLIFYVKIGDLGCAQKLFD 94

Query: 146 EIPVKNSVCANALLSGYCE---AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
            +P ++ V  NA++SG      A+     +EL   M A GL  D FT +++L ACA L+A
Sbjct: 95  GMPQRSVVAWNAVISGCARGGSAEAQERAVELFDAMRAEGLAPDQFTFASVLCACARLAA 154

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              GR+VH   ++  C++G +VF  S+L++MY KC     A +VF  A  R       +V
Sbjct: 155 LGHGRRVHGVAVK--CDVGGNVFANSALVDMYLKCSCPGDAHRVFAAAPER-------NV 205

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
            +WT+++  +G+ G   E + L++ M  +G +P++V F+ V+SAC+H G V  G+  F  
Sbjct: 206 TMWTAVISGHGQQGRVAEALALFDRMAADGLRPNDVTFLAVLSACAHGGLVDEGLRRFSS 265

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD- 381
           M  +Y L P   HY+ +VD+L R G L  A++L+  + D    S    +WGA+L AC   
Sbjct: 266 MSMEYGLTPRGPHYAAVVDMLARVGRLHDAYELVKNLPDCQEHS---VVWGAILGACRKH 322

Query: 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCS 441
            G  EL +LAA++   L P N G Y++L+N YA   MWD +    E M+  GLKKD   S
Sbjct: 323 GGDVELVELAARRFFRLQPGNAGKYLVLANTYAAREMWDSVAGAHEAMRALGLKKDRAWS 382

Query: 442 WIEVTG 447
            +EV G
Sbjct: 383 SVEVQG 388



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 123/288 (42%), Gaps = 16/288 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA    TG    C     ++L++ Y       +LG        +  R+ + +N VIS 
Sbjct: 56  RIHARMVATGFR--CSAYIATKLLIFYVKI---GDLGCAQKLFDGMPQRSVVAWNAVISG 110

Query: 61  FCRNGSPL---YALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
             R GS      A++ F  M   G+  D +   S L A   +     G++V     K   
Sbjct: 111 CARGGSAEAQERAVELFDAMRAEGLAPDQFTFASVLCACARLAALGHGRRVHGVAVKCDV 170

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
             +VF  SAL+D+Y K     DA  +F   P +N     A++SG+ +    A  L L   
Sbjct: 171 GGNVFANSALVDMYLKCSCPGDAHRVFAAAPERNVTMWTAVISGHGQQGRVAEALALFDR 230

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M A GL  +  T  A+L ACA     + G +  + M  +   L       +++++M  + 
Sbjct: 231 MAADGLRPNDVTFLAVLSACAHGGLVDEGLRRFSSMSME-YGLTPRGPHYAAVVDMLARV 289

Query: 238 GLVTKALQ-VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           G +  A + V NL       +  +  V+W ++LG   ++G   E+++L
Sbjct: 290 GRLHDAYELVKNLP------DCQEHSVVWGAILGACRKHGGDVELVEL 331


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/395 (32%), Positives = 215/395 (54%), Gaps = 14/395 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +NVVIS + +      +L  F  M   G     +   + L+ + ++   + G+Q+   
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQ 376

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
              +   S + VG++L+D+YAK  +  +AEL+F  +P + +V   AL+SGY +  L   G
Sbjct: 377 ALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAG 436

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L+L   M    L  D  T + +L+A A  ++   G+Q+HA++IR   NL N VF  S L+
Sbjct: 437 LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRS-GNLEN-VFSGSGLV 494

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KCG +  A+QVF       E   +++ V W +++  +  NG  +  I  +  M+ +
Sbjct: 495 DMYAKCGSIKDAVQVF-------EEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIES 547

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G +PD V+ + V++ACSH G V+ G EYF+ M   Y + P  +HY+C++DLL R G   +
Sbjct: 548 GLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAE 607

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIYVMLS 410
           A KL++EM           MW ++L+AC       L + AA+K   ++   +   YV +S
Sbjct: 608 AEKLMDEM----PFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMS 663

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           N+YA    W+++  +++ M+E+G+KK    SW+EV
Sbjct: 664 NIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEV 698



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 169/364 (46%), Gaps = 17/364 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + FN +I+ + ++G    ++  F  M   G     +     L A   + D   G+Q+
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A    +G+     VG+ ++D Y+K   + +  ++FDE+P  + V  N ++S Y +A  +
Sbjct: 273 HALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQY 332

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L   R M  +G D  +F  + +L   A LS+ + GRQ+H   +    +  + + + +
Sbjct: 333 EASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATAD--SILHVGN 390

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++MY KC +  +A  +F     R         V WT+++  Y + G     +KL+  M
Sbjct: 391 SLVDMYAKCEMFEEAELIFKSLPQRT-------TVSWTALISGYVQKGLHGAGLKLFTKM 443

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +  + D+  F TV+ A +    + LG +   +++    LE      S LVD+  + G 
Sbjct: 444 RGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGS 502

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVGIY 406
           +  A ++  EM DR   S     W AL+SA  D G  E    A  K +E  L P +V I 
Sbjct: 503 IKDAVQVFEEMPDRNAVS-----WNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSIL 557

Query: 407 VMLS 410
            +L+
Sbjct: 558 GVLT 561



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 132/321 (41%), Gaps = 43/321 (13%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            K L  R  + +  +IS + + G     LK F+ M    +  D     + L AS S    
Sbjct: 409 FKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASL 468

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             GKQ+ A + +SG L +VF GS L+D+YAK   I DA  +F+E+P +N+V  NAL+S +
Sbjct: 469 LLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAH 528

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       +     M   GL  D  ++  +L AC+                        
Sbjct: 529 ADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS------------------------ 564

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
                         CG V +  + F  A   + G I      +  ML + GRNG F E  
Sbjct: 565 -------------HCGFVEQGTEYFQ-AMSPIYG-ITPKKKHYACMLDLLGRNGRFAEAE 609

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           KL + M     +PDE+ + +V++AC       L     E +    KL      Y  + ++
Sbjct: 610 KLMDEMPF---EPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAA-YVSMSNI 665

Query: 343 LCRAGELDKAWKLINEMLDRG 363
              AGE +K   +   M +RG
Sbjct: 666 YAAAGEWEKVRDVKKAMRERG 686



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 13/213 (6%)

Query: 107 QVQAHVTKSGWLSSVF--VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           QV A   K G+ ++ F  V + L+  Y ++  +  A ++F+EIP K+SV  N L++GY +
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK 227

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             L+   + L   M   G     FT S +L+A  GL     G+Q+HA  +        D 
Sbjct: 228 DGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSV--TTGFSRDA 285

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIK 283
            + + +++ Y K   V +   +F+        E+ + D V +  ++  Y +   ++  + 
Sbjct: 286 SVGNQILDFYSKHDRVLETRMLFD--------EMPELDFVSYNVVISSYSQADQYEASLH 337

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            +  M   G       F T++S  ++   +++G
Sbjct: 338 FFREMQCMGFDRRNFPFATMLSIAANLSSLQMG 370



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 34/154 (22%)

Query: 182 GLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           G D D    +F +  LLR    +SAA   R+V+  M  K      +    +++I  + K 
Sbjct: 43  GFDTDTCRSNFIVEDLLRR-GQVSAA---RKVYDEMPHK------NTVSTNTMISGHVKT 92

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKP 295
           G V+ A  +F+    R        VV WT ++G Y RN +F E  KL+  M  +   T P
Sbjct: 93  GDVSSARDLFDAMPDRT-------VVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLP 145

Query: 296 DEVAFVTVISACS-----------HTGQVKLGIE 318
           D V F T++  C+           H   VKLG +
Sbjct: 146 DHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFD 179


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/400 (33%), Positives = 216/400 (54%), Gaps = 18/400 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +N +I  +        AL+ F  M V           S L  S S+      KQ+
Sbjct: 303 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQI 362

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G    +F GSALID+Y+K   + DA  +F+E+  K+ V  NA+  GY +    
Sbjct: 363 HGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLEN 422

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV--FM 226
              L+L   +       + FT +AL+ A + L++   G+Q H  +++    +G D   F+
Sbjct: 423 EEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVK----MGLDFCPFV 478

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L++MY KCG + +A ++FN         I +DVV W SM+  + ++G  +E + ++ 
Sbjct: 479 TNALVDMYAKCGSIEEARKMFN-------SSIWRDVVCWNSMISTHAQHGEAEEALGMFR 531

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M+  G +P+ V FV V+SACSH G V+ G+ +F  M   + ++PG EHY+C+V LL R+
Sbjct: 532 EMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRS 590

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G+L +A + I +M        +  +W +LLSAC   G  ELGK AA+ A+  DP + G Y
Sbjct: 591 GKLFEAKEFIEKM----PIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSY 646

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           ++LSN++A   MW ++ ++R+ M    + K+ G SWIEV 
Sbjct: 647 ILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVN 686



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 181/368 (49%), Gaps = 26/368 (7%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           + + L S + A T +     G Q+   V +SG+   V+VG++LID Y+K   I  A L+F
Sbjct: 36  NEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVF 95

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D++  K +V    +++GY +       LEL   M    +  D + +S++L AC+ L   E
Sbjct: 96  DQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLE 155

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G+Q+HAY++R+   +  DV + + LI+ Y KC  V    ++F+         + K+++ 
Sbjct: 156 GGKQIHAYVLRRGTEM--DVSVVNVLIDFYTKCNRVKAGRKLFDQM-------VVKNIIS 206

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           WT+M+  Y +N +  E +KL+  M   G KPD  A  +V+++C     ++ G +     V
Sbjct: 207 WTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQ-----V 261

Query: 325 HDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           H Y ++   E      + L+D+  ++  L  A K+ + M ++     +V  + A++    
Sbjct: 262 HAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQ-----NVISYNAMIEGYS 316

Query: 381 DCGKF-ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV- 438
              K  E  +L  +  + L P ++  +V L  + A     +   Q+  L+ + G+  D+ 
Sbjct: 317 SQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLF 376

Query: 439 -GCSWIEV 445
            G + I+V
Sbjct: 377 AGSALIDV 384



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 158/332 (47%), Gaps = 23/332 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +  + +  +I+ + + G    +L+ F+ M    +  D Y + S L+A + ++    GKQ+
Sbjct: 101 KTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQI 160

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A+V + G    V V + LID Y K   +     +FD++ VKN +    ++SGY +    
Sbjct: 161 HAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFD 220

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              ++L   M  LG   D F  +++L +C  L A E GRQVHAY I+   NL ++ F+++
Sbjct: 221 WEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIK--ANLESNEFVKN 278

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            LI+MY K  L+  A +VF++          ++V+ + +M+  Y       E ++L+  M
Sbjct: 279 GLIDMYAKSNLLXDAKKVFDVMAE-------QNVISYNAMIEGYSSQEKLSEALELFHEM 331

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE----HYSCLVDLLC 344
            +    P  + FV+++   +    ++L  +     +H   ++ G        S L+D+  
Sbjct: 332 RVRLFPPSLLTFVSLLGVSASLFALELSKQ-----IHGLIIKXGVSLDLFAGSALIDVYS 386

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +   +  A  +  EM ++      + +W A+ 
Sbjct: 387 KCSYVKDARHVFEEMNEK-----DIVVWNAMF 413



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 26/206 (12%)

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY E  L    +  V L    G   + F L++++RAC  L   E G Q+H +++R     
Sbjct: 15  GYSEEAL----MVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVR--SGF 68

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             DV++ +SLI+ Y K G +  A  VF+         + K  V WT+++  Y + G    
Sbjct: 69  DQDVYVGTSLIDFYSKNGBIEVARLVFDQL-------LEKTAVTWTTIIAGYTKCGRSXV 121

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW--MVHDYKLEPGPEH--- 335
            ++L+  M      PD     +V+SACS        +E+ E    +H Y L  G E    
Sbjct: 122 SLELFAQMRETNVVPDRYVVSSVLSACSM-------LEFLEGGKQIHAYVLRRGTEMDVS 174

Query: 336 -YSCLVDLLCRAGELDKAWKLINEML 360
             + L+D   +   +    KL ++M+
Sbjct: 175 VVNVLIDFYTKCNRVKAGRKLFDQMV 200



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 144/354 (40%), Gaps = 54/354 (15%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S L+  Y+ C + K+     +  + +N ++ + +N +   + ++     ALK +S +   
Sbjct: 379 SALIDVYSKCSYVKDA---RHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFS 435

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
               + +   + +TA++++   R G+Q    + K G     FV +AL+D+YAK   I +A
Sbjct: 436 RQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEA 495

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             MF+    ++ VC N+++S + +       L + R M   G+  ++ T  A+L AC+  
Sbjct: 496 RKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACS-- 553

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLEGEIN 259
                    HA                          G V   L  FN + G      I 
Sbjct: 554 ---------HA--------------------------GXVEDGLNHFNSMPGFG----IK 574

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
                +  ++ + GR+G   E  +  E M +   +P  + + +++SAC   G V+LG   
Sbjct: 575 PGTEHYACVVSLLGRSGKLFEAKEFIEKMPI---EPAAIVWRSLLSACRIAGNVELGKYA 631

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
            E  +     + G   Y  L ++    G     W  + ++ DR   S  V   G
Sbjct: 632 AEMAISTDPKDSGS--YILLSNIFASKG----MWADVKKVRDRMDSSEVVKEPG 679


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/395 (30%), Positives = 219/395 (55%), Gaps = 14/395 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +NV+++ +  NG    +L+ F  +   G     +   + L+ +    +   G+Q+ + 
Sbjct: 366 ISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQ 425

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
              +  +S + VG++L+D+YAK     +A  +F ++ +++SV   A++S Y +  L   G
Sbjct: 426 TIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDG 485

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L+L   M    +  D  T ++++RACA L++   G+Q+H+++I       ++VF  S+L+
Sbjct: 486 LKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGS--GYISNVFSGSALV 543

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KCG +  ALQ+F     R       + V W +++  Y +NG     ++L+E M+ +
Sbjct: 544 DMYAKCGSIKDALQMFQEMPVR-------NSVSWNALISAYAQNGDGDCTLRLFEEMVRS 596

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G +PD V+ ++++ ACSH G V+ G++YF+ M   YKL P  EHY+  +D+LCR G  D+
Sbjct: 597 GLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDE 656

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIYVMLS 410
           A KL+ +M           MW ++L++C      EL K AA +   +    +   YV +S
Sbjct: 657 AEKLMAQM----PFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMS 712

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           N+YA    WD +G++++ M+E+G+KK    SW+E+
Sbjct: 713 NIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEI 747



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 178/383 (46%), Gaps = 30/383 (7%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VH+H  + G      ++  + L+  Y   R   +LG        +  R+ + FN +++ 
Sbjct: 219 QVHSHVIKLGY--DSTLVVSNSLLDSYCKTR---SLGLAFQLFNDIPERDSVTFNALLTG 273

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + + G    A+  F  M   G     +   + LTA   + D  FG+QV   V K  ++ +
Sbjct: 274 YSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWN 333

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           VFV +AL+D Y+K   + +A  +F E+P  + +  N L++ Y         LEL + +  
Sbjct: 334 VFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQF 393

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G D  +F  + LL   A     + GRQ+H+  I    +  +++ + +SL++MY KCG  
Sbjct: 394 TGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTI--VTDAISEILVGNSLVDMYAKCGEF 451

Query: 241 TKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
            +A ++F +LA         +  V WT+M+  Y + G  ++ +KL+  M       D   
Sbjct: 452 GEANRIFSDLAI--------QSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAAT 503

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKL 355
           + +++ AC+    + LG +     +H + +  G        S LVD+  + G +  A ++
Sbjct: 504 YASIVRACASLASLTLGKQ-----LHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQM 558

Query: 356 INEMLDRGHGSSSVSMWGALLSA 378
             EM  R    +SVS W AL+SA
Sbjct: 559 FQEMPVR----NSVS-WNALISA 576



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 174/358 (48%), Gaps = 23/358 (6%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           NL         +  R  + + ++I  + +N     A   F  M  HGI  D  +L + L+
Sbjct: 147 NLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLS 206

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
             T        +QV +HV K G+ S++ V ++L+D Y K   +  A  +F++IP ++SV 
Sbjct: 207 GFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVT 266

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            NALL+GY +       + L   M  +G     FT +A+L A   L   EFG+QVH +++
Sbjct: 267 FNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVV 326

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYG 273
           +  CN   +VF+ ++L++ Y K   V +A ++F         E+ + D + +  ++  Y 
Sbjct: 327 K--CNFVWNVFVANALLDFYSKHDRVVEASKLFY--------EMPEVDGISYNVLVTCYA 376

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLE-- 330
            NG  KE ++L++ +   G       F T++S  + +  + +G + + + +V D   E  
Sbjct: 377 WNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEIL 436

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
            G    + LVD+  + GE  +A ++ +++  +    SSV  W A++S+    G  E G
Sbjct: 437 VG----NSLVDMYAKCGEFGEANRIFSDLAIQ----SSVP-WTAMISSYVQKGLHEDG 485



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 152/367 (41%), Gaps = 46/367 (12%)

Query: 14  ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKT 73
           I  I+  + L+  Y  C      G        L  ++ +P+  +IS + + G     LK 
Sbjct: 432 ISEILVGNSLVDMYAKC---GEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKL 488

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M    I  D     S + A  S+     GKQ+ +H+  SG++S+VF GSAL+D+YAK
Sbjct: 489 FVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAK 548

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              I DA  MF E+PV+NSV  NAL+S Y +       L L   M   GL  D  +L ++
Sbjct: 549 CGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSI 608

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L AC+                                      CGLV + LQ F+ +  R
Sbjct: 609 LCACS-------------------------------------HCGLVEEGLQYFD-SMTR 630

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
           +   + K    + S + +  R G F E  KL   M     +PDE+ + +V+++C      
Sbjct: 631 IYKLVPKK-EHYASTIDMLCRGGRFDEAEKLMAQMPF---EPDEIMWSSVLNSCGIHKNQ 686

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           +L  +    +  + K+      Y  + ++   AGE D   K+   M +RG        W 
Sbjct: 687 ELAKKAANQLF-NMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWV 745

Query: 374 ALLSACH 380
            +    H
Sbjct: 746 EIKHKTH 752



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 13/207 (6%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           ++F  + +I  Y K   + +A  +FD +  + +V    L+ GY +   +     L   M 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKC 237
             G+D DH +L+ LL       +    RQVH+++I+    LG D  + + +SL++ Y K 
Sbjct: 191 RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIK----LGYDSTLVVSNSLLDSYCKT 246

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
             +  A Q+FN    R       D V + ++L  Y + G+ +E I L+  M   G +P E
Sbjct: 247 RSLGLAFQLFNDIPER-------DSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTE 299

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMV 324
             F  +++A      ++ G +   ++V
Sbjct: 300 FTFAAILTAGIQLDDIEFGQQVHGFVV 326


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/417 (34%), Positives = 225/417 (53%), Gaps = 20/417 (4%)

Query: 36  LGTLTNCLKFLN--PRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           LG +++  K  N  P+N + P++ +I+ FC+NG    A+  F  M    +  + + L S 
Sbjct: 295 LGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSI 354

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L      K +  G+Q+   V K G+   V+V +ALID+YAK   +  A  +F E+  KN 
Sbjct: 355 LNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNV 414

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPAL--GLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           V  N ++ GY    L  GG  L     AL   +     T S+ L ACA L++ E G QVH
Sbjct: 415 VSWNTVIVGY--ENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVH 472

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
              I+   N    V + +SLI+MY KCG +  A  VFN      E E   DV  W +++ 
Sbjct: 473 GLAIKT--NNAKRVAVSNSLIDMYAKCGDIKVAQTVFN------EME-TIDVASWNALIS 523

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y  +G  ++ +++++ M  +  KP+ + F+ V+S CS+ G +  G + FE M+ D+ +E
Sbjct: 524 GYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIE 583

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
           P  EHY+C+V L  R+G+LDKA  LI  +        SV +W A+LSA  +    E  + 
Sbjct: 584 PCLEHYTCMVRLFGRSGQLDKAMNLIEGI----PYEPSVMIWRAMLSASMNQYNEEFARR 639

Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +A++ L+++P +   YV+LSN+YA    W  +  +R+ MKEKG+KK+ G SWIE  G
Sbjct: 640 SAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQG 696



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 168/373 (45%), Gaps = 27/373 (7%)

Query: 15  CLIIFQSRLML-PYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF-CRNGSPLYALK 72
           CL +F + ++L  Y      K+     N    +  RN + +  +   + C++   LY   
Sbjct: 81  CLDLFATNILLNAYVKAGFDKDA---LNLFDEMPERNNVSYVTLTQGYACQDPVGLY--- 134

Query: 73  TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
             S +H  G  L+ +   S L    S+  A     + + + K G+ S+ FVG+ALI+ Y+
Sbjct: 135 --SRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYS 192

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
               +  A  +F+ I  K+ V    ++S Y E   +   L+L+  M   G   +++T   
Sbjct: 193 VCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDT 252

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
            L+A  GL A  F + VH  +++ C  L  D  +   L+++Y + G ++ A +VFN    
Sbjct: 253 ALKASIGLGAFHFAKSVHGQILKTCYEL--DPRVGVGLLQLYTQLGDMSDAFKVFN---- 306

Query: 253 RLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
               E+ K DVV W+ M+  + +NG+  + + ++  M      P+E    ++++ C+   
Sbjct: 307 ----EMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGK 362

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
              LG E    +V     +      + L+D+  +  ++D A KL  E+      S +V  
Sbjct: 363 CSGLG-EQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAEL-----SSKNVVS 416

Query: 372 WGALLSACHDCGK 384
           W  ++    + G+
Sbjct: 417 WNTVIVGYENLGE 429



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 128/283 (45%), Gaps = 28/283 (9%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           LD++A  + L       D+   K +   + K G    +F  + L++ Y K     DA  +
Sbjct: 47  LDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNL 106

Query: 144 FDEIPVKNSVCANALLSGY-CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           FDE+P +N+V    L  GY C+       + L   +   G + +    ++ L+    L  
Sbjct: 107 FDEMPERNNVSYVTLTQGYACQDP-----VGLYSRLHREGHELNPHVFTSFLKLFVSLDK 161

Query: 203 AEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
           AE    +H+ +++    LG D   F+ ++LI  Y  CG V  A  VF       EG + K
Sbjct: 162 AEICWWLHSPIVK----LGYDSNAFVGAALINAYSVCGSVDSARSVF-------EGILCK 210

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           D+V+W  ++  Y  NG F++ ++L   M M+G  P+   F T + A      + LG  +F
Sbjct: 211 DIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKA-----SIGLGAFHF 265

Query: 321 EWMVHDYKL----EPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
              VH   L    E  P     L+ L  + G++  A+K+ NEM
Sbjct: 266 AKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 17/278 (6%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y  C   + + T       L+ +N + +N VI  +   G    AL  F     + + +  
Sbjct: 393 YAKC---EKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTE 449

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
               S+L A  S+     G QV     K+     V V ++LID+YAK   I  A+ +F+E
Sbjct: 450 VTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNE 509

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
           +   +    NAL+SGY    L    L +  +M       +  T   +L  C+     + G
Sbjct: 510 METIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQG 569

Query: 207 RQVHAYMIRKCCNLGNDVFMQ--SSLIEMYGKCGLVTKALQVFNLAGHRLEG-EINKDVV 263
           +     MI   C+ G +  ++  + ++ ++G+ G + KA+ +       +EG      V+
Sbjct: 570 QDCFESMI---CDHGIEPCLEHYTCMVRLFGRSGQLDKAMNL-------IEGIPYEPSVM 619

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           +W +ML     N Y +E  +     ++     DE  +V
Sbjct: 620 IWRAMLSA-SMNQYNEEFARRSAEEILKINPKDEATYV 656


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/401 (34%), Positives = 217/401 (54%), Gaps = 17/401 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI--FLDTYALCSSLTASTSVKDARFGK 106
           R+ + +N +I+ F   G    AL TF  M    I    D + L S L A +S      GK
Sbjct: 542 RSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGK 601

Query: 107 QVQAHVTKSGW--LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           Q+   + +SG+   SS  +  +L+DLY K   +  A   FD+I  K  +  ++L+ GY +
Sbjct: 602 QIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQ 661

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
              +   + L + +  L    D F LS+++   A  +    G+Q+ A  ++    L   V
Sbjct: 662 EGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSV 721

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
              +S+++MY KCGLV +A + F  A  +L     KDV+ WT ++  YG++G  K+ +++
Sbjct: 722 L--NSVVDMYLKCGLVDEAEKCF--AEMQL-----KDVISWTVVITGYGKHGLGKKSVRI 772

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  ML +  +PDEV ++ V+SACSH+G +K G E F  ++  + ++P  EHY+C+VDLL 
Sbjct: 773 FYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLG 832

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG L +A  LI+ M  +     +V +W  LLS C   G  ELGK   +  L +D  N  
Sbjct: 833 RAGRLKEAKHLIDTMPIK----PNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPA 888

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            YVM+SNLY +   W+E G  REL   KGLKK+ G SW+E+
Sbjct: 889 NYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEI 929



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 173/359 (48%), Gaps = 22/359 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + ++ ++S    NG    +L  FS M   GI+ + +   ++L A   +     G Q+
Sbjct: 441 RNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQI 500

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G+   V VG++L+D+Y+K   I++AE +F  I  ++ +  NA+++G+  A   
Sbjct: 501 HGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYG 560

Query: 169 AGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           +  L+   +M    +    D FTL++LL+AC+       G+Q+H +++R   +  +   +
Sbjct: 561 SKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATI 620

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
             SL+++Y KCG +  A + F+           K ++ W+S++  Y + G F E + L++
Sbjct: 621 TGSLVDLYVKCGYLFSARKAFDQIKE-------KTMISWSSLILGYAQEGEFVEAMGLFK 673

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH--YSCLVDLLC 344
            +    ++ D  A  ++I   +    ++ G +     V   KL  G E    + +VD+  
Sbjct: 674 RLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAV---KLPSGLETSVLNSVVDMYL 730

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
           + G +D+A K   EM  +      V  W  +++     GK  LGK + +   E+  HN+
Sbjct: 731 KCGLVDEAEKCFAEMQLK-----DVISWTVVITG---YGKHGLGKKSVRIFYEMLRHNI 781



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 22/274 (8%)

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           WL+ +   + LID+Y K      A  +FD +P +N V  +AL+SG+       G L L  
Sbjct: 409 WLN-LITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFS 467

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMY 234
            M   G+  + FT S  L+AC  L+A E G Q+H +    C  +G ++ ++  +SL++MY
Sbjct: 468 EMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF----CLKIGFEMMVEVGNSLVDMY 523

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG + +A +VF          +++ ++ W +M+  +   GY  + +  +  M     K
Sbjct: 524 SKCGRINEAEKVFRRI-------VDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIK 576

Query: 295 --PDEVAFVTVISACSHTGQVKLGIEYFEWMVHD-YKLEPGPEHYSCLVDLLCRAGELDK 351
             PDE    +++ ACS TG +  G +   ++V   +           LVDL  + G L  
Sbjct: 577 ERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFS 636

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           A K  +++ ++     ++  W +L+      G+F
Sbjct: 637 ARKAFDQIKEK-----TMISWSSLILGYAQEGEF 665



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 135/305 (44%), Gaps = 50/305 (16%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  +  + ++ +I  + + G  + A+  F  +      +D++AL S +         R G
Sbjct: 644 IKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQG 703

Query: 106 KQVQAHVTK--SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           KQ+QA   K  SG  +SV   ++++D+Y K  L+ +AE  F E+ +K+ +    +++GY 
Sbjct: 704 KQMQALAVKLPSGLETSVL--NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 761

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           +  L    + +   M    ++ D     A+L AC+           H+ MI++    G +
Sbjct: 762 KHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACS-----------HSGMIKE----GEE 806

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           +F  S L+E +G                      I   V  +  ++ + GR G  KE   
Sbjct: 807 LF--SKLLETHG----------------------IKPRVEHYACVVDLLGRAGRLKEAKH 842

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSCLVDL 342
           L + M +   KP+   + T++S C   G ++LG E  + ++  D K    P +Y  + +L
Sbjct: 843 LIDTMPI---KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAK---NPANYVMMSNL 896

Query: 343 LCRAG 347
             +AG
Sbjct: 897 YGQAG 901


>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
          Length = 493

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/407 (32%), Positives = 219/407 (53%), Gaps = 23/407 (5%)

Query: 48  PR---NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF 104
           PR   + + +N +I+ + R G P  AL++F  M    + LD   L + L A       + 
Sbjct: 67  PRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKV 126

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G    A V  +G+  + ++GS+L+ +YAK  ++ +A  +F+ +P +N VC  ++++G  +
Sbjct: 127 GSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQ 186

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN---LG 221
           +  +   ++L R M   G+  D  T++ ++ +C  + A + GR +HAY     C+   LG
Sbjct: 187 SGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAY-----CDGHGLG 241

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            ++ +++SLI+MY KCG V KA Q+F+       G   +DV  WT M+  +  NG   E 
Sbjct: 242 KELSVKNSLIDMYSKCGDVNKAYQIFH-------GLTKRDVFTWTVMIMGFAMNGLCVEA 294

Query: 282 IKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
           + L+  M   +   P+EV F+ V++ACSH G V+ G  +F  M   Y L P  EHY C+V
Sbjct: 295 LDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMV 354

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RA  L +A + I +M      +  V +W +LL AC   G+  L + AA++  +L+P
Sbjct: 355 DLLGRAKLLAEAEQFIKDM----PVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEP 410

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
              G +V+LSN+YA    W ++  +R  M      K  GCS+IEV G
Sbjct: 411 KRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDG 457



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 12/281 (4%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           LD Y+L  +++A+  V     G Q  A   K    S  FV +ALI++Y+       A L+
Sbjct: 3   LDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLV 62

Query: 144 FDEIP--VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            D  P    + V  N +++GY    +    L+    M    +  D  TL  +L ACA   
Sbjct: 63  LDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTG 122

Query: 202 AAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
           A + G   HA ++     +  + ++ SSL+ MY KCG+V +A +VFN    R       +
Sbjct: 123 AMKVGSLCHALVVLNGFEI--NCYIGSSLVSMYAKCGMVEEARRVFNRMPER-------N 173

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           VV WTSM+    ++G FKE + L+  M + G K D+    TV+S+C   G + LG  Y  
Sbjct: 174 VVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLG-RYLH 232

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
                + L       + L+D+  + G+++KA+++ + +  R
Sbjct: 233 AYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKR 273



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 13/201 (6%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           D+++L+  + A A + + + G Q HA  ++   +L +D F+ ++LI MY  C     A  
Sbjct: 4   DNYSLNIAISAAARVPSLDVGSQFHALSLK--LSLASDSFVLNALINMYSSCNYPASARL 61

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
           V + A          DVV W +++  Y R G   + ++ +  M     + DEV  + V+ 
Sbjct: 62  VLDSAP-----RWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLV 116

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
           AC+ TG +K+G      +V +   E      S LV +  + G +++A ++ N M +R   
Sbjct: 117 ACARTGAMKVGSLCHALVVLN-GFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPER--- 172

Query: 366 SSSVSMWGALLSACHDCGKFE 386
             +V  W ++++ C   G+F+
Sbjct: 173 --NVVCWTSMIAGCTQSGRFK 191


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 219/403 (54%), Gaps = 19/403 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +++ + + G     L+TF  M+   +    + +   L+    + D   G+ +
Sbjct: 120 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRII 179

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G+ S V V ++LID+Y K   I DA  +F+ +  K+    N++ S + +    
Sbjct: 180 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDH 239

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG------N 222
            G L L+  M   G+  D  T++ +L AC+ L+A   GR++H YMI     LG      +
Sbjct: 240 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI--VSGLGKDGKDID 297

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV +++++I+MY KCG +  A  VF       E   NKDV  W  M+  YG +GY  E +
Sbjct: 298 DVLLKNAVIDMYAKCGSMRDAHLVF-------ERMXNKDVASWNIMIMGYGMHGYGNEAL 350

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +++  M     KPDEV FV V+SACSH G V  G  +   M   Y + P  EHY+C++D+
Sbjct: 351 EMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDM 410

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG+LD+A++L   M       ++  +W ALL+AC       L ++AAQ+  EL+P +
Sbjct: 411 LGRAGQLDEAYELALTMPIE----ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEH 466

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G YV++SN+Y     ++E+ ++R  M+++ ++K  GCSWIE+
Sbjct: 467 CGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIEL 509



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 180/396 (45%), Gaps = 26/396 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N   FN +IS F  NG P    + +  M   G+  D +    ++ A   V +    K++ 
Sbjct: 23  NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI---KKIH 79

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
             + K G    VF+GSAL++ Y K  L+  A++ F+E+P+++ V  NA+++GY +   + 
Sbjct: 80  GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 139

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             LE  R M    +    FT++ +L   A +     GR +H + ++   + G  V + +S
Sbjct: 140 MVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSG--VAVSNS 197

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           LI+MYGKC  +  AL++F +          KD+  W S+  V+ + G     ++L + ML
Sbjct: 198 LIDMYGKCKCIEDALEIFEMMR-------EKDIFSWNSIXSVHEQCGDHDGTLRLLDRML 250

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL-----VDLLC 344
             G +PD V   TV+ ACSH   +  G E   +M+     + G +    L     +D+  
Sbjct: 251 GAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYA 310

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           + G +  A  +   M ++   S ++ + G      H  G   L   +    ++L P  V 
Sbjct: 311 KCGSMRDAHLVFERMXNKDVASWNIMIMG---YGMHGYGNEALEMFSRMCEVQLKPDEVT 367

Query: 405 IYVMLSNL-YAKFCMWDEIGQLRELMKEKGLKKDVG 439
              +LS   +A F     + Q R  + +   K DV 
Sbjct: 368 FVGVLSACSHAGF-----VSQGRNFLAQMKSKYDVA 398



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 15/155 (9%)

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY KC  +  AL +F+   H    EIN  V  + +++  +  NG+ +E  + Y+ M   G
Sbjct: 1   MYSKCNQMNFALSIFSDPTH----EIN--VFAFNAIISGFITNGFPEEGFEFYQKMRNEG 54

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
             PD+  F   I AC       L I+    ++  + LE      S LV+   + G ++ A
Sbjct: 55  VMPDKFTFPCAIKACLDV----LEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHA 110

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
                E+  R      V +W A+++     G+FE+
Sbjct: 111 QVAFEELPIR-----DVVLWNAMVNGYAQIGQFEM 140


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/400 (33%), Positives = 215/400 (53%), Gaps = 18/400 (4%)

Query: 51  PLPFNVVISDFCRNGS-----PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           P P + + +   R+ S      +Y+L  ++ M +  +    Y   S + +   +   R G
Sbjct: 71  PNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHG 130

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + +  HV  +G+ S V+V +AL+  Y K  ++ +A  +FD++  ++ V  N+++SGY + 
Sbjct: 131 RIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQN 190

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L   M  +G++ +  T  ++L ACA L A   G  VH Y +    +L  +V 
Sbjct: 191 GFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDL--NVV 248

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +SLI MY +CG V+KA +VF+    R       +VV WT+M+  YG NGY  + ++L+
Sbjct: 249 LGTSLINMYTRCGNVSKAREVFDSMKER-------NVVAWTAMISGYGTNGYGSQAVELF 301

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M  NG  P+ + FV V+SAC+H G V  G   FE M  +Y+L P  EH+ CLVD+L R
Sbjct: 302 HEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGR 361

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG LD+A+  I E+    H   + ++W A+L AC     F LG   A+  L  +P N   
Sbjct: 362 AGLLDEAYNFIKEI----HEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAH 417

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           YV+LSN+YA     D++  +R+ M  K LKK VG S I++
Sbjct: 418 YVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDL 457



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 141/277 (50%), Gaps = 24/277 (8%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE-A 165
           QV AHV  SG+  S F+ + L++L      I     +F  +P  +S    +L+    +  
Sbjct: 30  QVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFH 89

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L     M    +   ++T ++++++CA L A   GR +H +++      G+DV+
Sbjct: 90  NFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVN--GFGSDVY 147

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q++L+  YGKCG++  A +VF+    R        VV W SM+  Y +NG+ KE I+L+
Sbjct: 148 VQTALMSFYGKCGVLCNARKVFDKMRDR-------SVVTWNSMISGYEQNGFAKEAIRLF 200

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
           + M   G +P+   FV+V+SAC+H G   LG     W VH+Y +  G +      + L++
Sbjct: 201 DRMKEIGVEPNSATFVSVLSACAHLGAFILGC----W-VHEYAVGNGLDLNVVLGTSLIN 255

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +  R G + KA ++ + M +R     +V  W A++S 
Sbjct: 256 MYTRCGNVSKAREVFDSMKER-----NVVAWTAMISG 287



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 144/352 (40%), Gaps = 59/352 (16%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKT 73
           +  Q+ LM  Y  C      G L N  K  +    R+ + +N +IS + +NG    A++ 
Sbjct: 146 VYVQTALMSFYGKC------GVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRL 199

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M   G+  ++    S L+A   +     G  V  +   +G   +V +G++LI++Y +
Sbjct: 200 FDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTR 259

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A  +FD +  +N V   A++SGY      +  +EL   M   GL  +  T  A+
Sbjct: 260 CGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAV 319

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA       GR+V   M R+   L  +V     L++M G+ GL+ +A          
Sbjct: 320 LSACAHAGLVNEGRRVFESM-REEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIK----- 373

Query: 254 LEGEINKD--VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
              EI+++    +WT+MLG                                   AC    
Sbjct: 374 ---EIHEEPAPAIWTAMLG-----------------------------------ACKMHK 395

Query: 312 QVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
              LG +  E   H    EPG P HY  L ++   AG +D+   + + M+ +
Sbjct: 396 NFGLGAQVAE---HRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRK 444


>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
 gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/420 (32%), Positives = 217/420 (51%), Gaps = 44/420 (10%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +  N   + A   F+ M   G+ +D   L + L+A +S+ +++ GKQ+ A+  
Sbjct: 272 WNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYAC 331

Query: 114 KSGWLSSVFVGSALIDLYAK-------------------LLL------------IHDAEL 142
           K G +    V SA ID Y+K                   +LL            I DA+ 
Sbjct: 332 KVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQ 391

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F+ +P K+ +  N+++ G  +       L+L  +M  L L  + F L++++ ACA +S+
Sbjct: 392 IFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACASISS 451

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            E G Q+ A        L +D  + +SL++ Y KCG +    ++F+         +  D 
Sbjct: 452 LELGEQIFARAT--VVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTM-------MKSDE 502

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           + W SML  Y  NG+  E + L+  M   G +P E+ F  V+SAC H G VK G  +F  
Sbjct: 503 ISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSACDHCGLVKEGWRWFNI 562

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M +DY ++PG EHYSC+VDL  RAG L++A  LI  M       +  SMW ++L  C   
Sbjct: 563 MQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRM----PFEADASMWSSVLRGCMAH 618

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
           G+ +LG+  AQ+ +ELDP N G YV LS+++A    W+    +R++M+E+ ++K  G SW
Sbjct: 619 GEKDLGEKVAQQIIELDPENSGAYVQLSSIFATSGDWESSALVRKVMQERQVQKYPGYSW 678



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 158/395 (40%), Gaps = 93/395 (23%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVI 58
           +H   F+ GL+   L +  +RL+  YT C      G++T+  K  +    RN   +N +I
Sbjct: 27  LHILFFKKGLIQSTLSL-ANRLLQMYTRC------GSMTDAHKLFDEMPHRNCFSWNTMI 79

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
             + ++G+   +++ F  M                                ++     W 
Sbjct: 80  EGYMKSGNKERSIRLFDMM--------------------------------SNKNDYSW- 106

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           + VF G      +AK   +  A  +F+E+P +N V  N+++  Y          E VRL 
Sbjct: 107 NVVFSG------FAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYARN---GSPREAVRLF 157

Query: 179 PALGLDY------DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
             L LD       D F L+ ++ AC  L   + G+Q+HA ++    N+  D  + SSLI 
Sbjct: 158 KELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHARILID--NMELDSVLTSSLIN 215

Query: 233 MYGKCGLVTKALQVFN-------------LAGHRLEGEINKD-----------VVLWTSM 268
           +YGKCG +  A  V N             + G+   G +N             VV+W S+
Sbjct: 216 LYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSL 275

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y  N    E   L+  M   G K D     T++SACS     + G +     +H Y 
Sbjct: 276 ISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQ-----MHAYA 330

Query: 329 LEPG----PEHYSCLVDLLCRAGELDKAWKLINEM 359
            + G        S  +D   + G L+ A KL +E+
Sbjct: 331 CKVGLICDNVVASAFIDAYSKCGSLNDACKLFSEL 365



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 123/311 (39%), Gaps = 50/311 (16%)

Query: 35  NLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           N G + +  +  N    ++ + +N +I    +NG P+ AL  F  M+   + ++ + L S
Sbjct: 382 NSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTS 441

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            ++A  S+     G+Q+ A  T  G  S   + ++L+D Y K   I     +FD +   +
Sbjct: 442 VISACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTMMKSD 501

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            +  N++L GY         L L   M   G+     T + +L AC              
Sbjct: 502 EISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSAC-------------- 547

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
                                    CGLV +  + FN+  +  +  I+  +  ++ M+ +
Sbjct: 548 -----------------------DHCGLVKEGWRWFNIMQY--DYHIDPGIEHYSCMVDL 582

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           + R G  +E + L + M     + D   + +V+  C   G+  LG +  + ++     E 
Sbjct: 583 FARAGCLEEAMNLIKRMPF---EADASMWSSVLRGCMAHGEKDLGEKVAQQII-----EL 634

Query: 332 GPEHYSCLVDL 342
            PE+    V L
Sbjct: 635 DPENSGAYVQL 645



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 113/280 (40%), Gaps = 53/280 (18%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF-VGSALIDLYAKLLLIHDAEL 142
           LD   L   L +  +      GKQ+     K G + S   + + L+ +Y +   + DA  
Sbjct: 3   LDLQNLARFLQSLNTPHSIHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHK 62

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FDE+P +N    N ++ GY ++      + L  +M     DY                 
Sbjct: 63  LFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSNKN-DYSW--------------- 106

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
                              N VF        + K G +  A ++FN          N++ 
Sbjct: 107 -------------------NVVF------SGFAKAGEMEIARRLFNEMP-------NRNG 134

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP---DEVAFVTVISACSHTGQVKLGIEY 319
           V+W SM+  Y RNG  +E ++L++ + ++       D     TVI AC+  G+++ G + 
Sbjct: 135 VVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQI 194

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
              ++ D  +E      S L++L  + G+LD A  ++N M
Sbjct: 195 HARILID-NMELDSVLTSSLINLYGKCGDLDSAHCVLNTM 233



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 109/241 (45%), Gaps = 30/241 (12%)

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +D D   L+  L++     +   G+Q+H    +K   + + + + + L++MY +CG +T 
Sbjct: 1   MDLDLQNLARFLQSLNTPHSIHQGKQLHILFFKKGL-IQSTLSLANRLLQMYTRCGSMTD 59

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           A ++F+   HR       +   W +M+  Y ++G  +  I+L++ M    +  ++ ++  
Sbjct: 60  AHKLFDEMPHR-------NCFSWNTMIEGYMKSGNKERSIRLFDMM----SNKNDYSWNV 108

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM--- 359
           V S  +  G++++    F  M +   +      ++ ++    R G   +A +L  E+   
Sbjct: 109 VFSGFAKAGEMEIARRLFNEMPNRNGVV-----WNSMIHSYARNGSPREAVRLFKELNLD 163

Query: 360 -LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL----ELDPHNVGIYVMLSNLYA 414
            LD+    + V     ++ AC D G+ + GK    + L    ELD     +   L NLY 
Sbjct: 164 PLDKSCCDTFV--LATVIGACTDLGEIQCGKQIHARILIDNMELDS---VLTSSLINLYG 218

Query: 415 K 415
           K
Sbjct: 219 K 219


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 220/403 (54%), Gaps = 19/403 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +++ + + G     L+TF  M+   +    + +   L+    + D   G+ +
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRII 259

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G+ S V V ++LID+Y K   I DA  +F+ +  K+    N+++S + +    
Sbjct: 260 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH 319

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG------N 222
            G L L+  M   G+  D  T++ +L AC+ L+A   GR++H YMI     LG      +
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI--VSGLGKDGKDID 377

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV +++++I+MY KCG +  A  VF       E   NKDV  W  M+  YG +GY  E +
Sbjct: 378 DVLLKNAVIDMYAKCGSMRDAHLVF-------ERMSNKDVASWNIMIMGYGMHGYGNEAL 430

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +++  M     KPDEV FV V+SACSH G V  G  +   M   Y + P  EHY+C++D+
Sbjct: 431 EMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDM 490

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG+LD+A++L   M       ++  +W ALL+AC       L ++AAQ+  EL+P +
Sbjct: 491 LGRAGQLDEAYELALTMPIE----ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEH 546

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G YV++SN+Y     ++E+ ++R  M+++ ++K  GCSWIE+
Sbjct: 547 CGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIEL 589



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 179/396 (45%), Gaps = 28/396 (7%)

Query: 20  QSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV 79
           Q  + LP  T +  +N  T        +  N   FN +IS F  NG P    + +  M  
Sbjct: 81  QLEIELPSNTLKAGENDPT--------HEINVFAFNAIISGFITNGFPEEGFEFYQKMRN 132

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
            G+  D +    ++ A   V +    K++   + K G    VF+GSAL++ Y K  L+  
Sbjct: 133 EGVMPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEH 189

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A++ F+E+P+++ V  NA+++GY +   +   LE  R M    +    FT++  L   A 
Sbjct: 190 AQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAV 249

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           +     GR +H + ++   + G  V + +SLI+MYGKC  +  AL++F +          
Sbjct: 250 MGDLNNGRIIHGFAMKMGYDSG--VAVSNSLIDMYGKCKCIEDALEIFEMMR-------E 300

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           KD+  W S++ V+ + G     ++L + ML  G +PD V   TV+ ACSH   +  G E 
Sbjct: 301 KDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREI 360

Query: 320 FEWMVHDYKLEPGPEHYSCL-----VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
             +M+     + G +    L     +D+  + G +  A  +   M ++   S ++ + G 
Sbjct: 361 HGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMG- 419

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
                H  G   L   +    ++L P  V    +LS
Sbjct: 420 --YGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLS 453


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 226/449 (50%), Gaps = 55/449 (12%)

Query: 37  GTLTNCLKFLNPRNPLP---FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G LT   + L+     P   +N +IS +  +G    AL  F  M + G+ +D     S +
Sbjct: 237 GDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVI 296

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSS----VFVGSALIDLYAKLLLIHDAELMFDEIPV 149
           +A         GKQV A++ K+         + VG+ LI LY K   +  A  +F E+PV
Sbjct: 297 SACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPV 356

Query: 150 KNSVCANALLSGYC------EAK------------LWA-------------GGLELVRLM 178
           K+ +  N LLSGY       EAK             W                L+L   M
Sbjct: 357 KDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQM 416

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYGK 236
              G + + +  +  + AC+ L A E GRQ+HA ++    +LG+D  +   +++I MY +
Sbjct: 417 KLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIV----HLGHDSTLSVGNAMITMYAR 472

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG+V  A  +F             D V W SM+   G++G+  + I+LYE ML  G  PD
Sbjct: 473 CGIVEAARTMFLTMPF-------VDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPD 525

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
              F+TV+SACSH G V+ G  YF  M+ +Y + PG +HY+ ++DL CRAG+   A  +I
Sbjct: 526 RRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVI 585

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
           + M       +   +W ALL+ C   G  +LG  AA+K  +L P + G YV+LSN+YA  
Sbjct: 586 DSM----PFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASL 641

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             W+++ + R+LM+++G+KK+  CSW EV
Sbjct: 642 GRWNDVARTRKLMRDRGVKKEPACSWTEV 670



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 186/460 (40%), Gaps = 108/460 (23%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV-KDARF 104
           L+ R+ + +N +I+ +        A++ F  M       D +   S L+AST +  D R 
Sbjct: 107 LDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQ 166

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAK---------LLLIHDAELMFDEIPVKNS--- 152
             Q+   V K G      V +AL+ +Y K           L+  A  +FDE+P +N    
Sbjct: 167 CGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIW 226

Query: 153 ----------------------------VCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
                                       +  NA++SGY    L+   L L R M  LG+ 
Sbjct: 227 TTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQ 286

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYGKCGLVTK 242
            D  T ++++ ACA       G+QVHAY+++   N   D  +   ++LI +Y K G V  
Sbjct: 287 VDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDG 346

Query: 243 ALQVFN-------------LAGHRLEGEI-----------NKDVVLWTSMLGVYGRNGYF 278
           A ++F              L+G+   G +            K+++ WT M+    +NG+ 
Sbjct: 347 ARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFG 406

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV---HDYKLEPGPEH 335
           ++ +KL+  M ++G +P++ AF   I+ACS  G ++ G +    +V   HD  L  G   
Sbjct: 407 EQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVG--- 463

Query: 336 YSCLVDLLCRAGELDKA--------------WK-LINEMLDRGHGSSSVSMWGAL----- 375
            + ++ +  R G ++ A              W  +I  +   GHG  ++ ++  +     
Sbjct: 464 -NAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGI 522

Query: 376 ----------LSACHDCGKFELGKLAAQKALELDPHNVGI 405
                     LSAC   G  E G       LE    N GI
Sbjct: 523 LPDRRTFLTVLSACSHAGLVEEGNRYFNSMLE----NYGI 558



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 136/312 (43%), Gaps = 52/312 (16%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGYCEAKLWAGGLELVRL 177
            V   + LI  Y+ L  +  A  +F+E P+  +++V  NA+++GY         +EL R 
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFG-RQVHAYMIRKCCNLGNDVF--MQSSLIEMY 234
           M       D FT +++L A   +   E    Q+H  +++     G ++F  + ++L+ +Y
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVK----FGIEIFPAVLNALLSVY 193

Query: 235 GKCG-------------------------------LVTKALQVFNLAGHR--LEGEINKD 261
            KC                                L+T  ++  +L G R  L+    + 
Sbjct: 194 VKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQP 253

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
            + W +M+  Y  +G F++ + L+  M + G + DE  + +VISAC+  G   LG +   
Sbjct: 254 GIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHA 313

Query: 322 WMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           +++ + +L P  +      + L+ L  + G++D A K+  EM         +  W  LLS
Sbjct: 314 YILKN-ELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEM-----PVKDIITWNTLLS 367

Query: 378 ACHDCGKFELGK 389
              + G+ E  K
Sbjct: 368 GYVNAGRMEEAK 379


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/431 (32%), Positives = 224/431 (51%), Gaps = 49/431 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +        A   F  +   GI  D++ L S L     +   R GK+ 
Sbjct: 232 KDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEA 291

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD-----EIPVKNSVCA-------- 155
            +     G  S+  VG AL+++Y+K   I  A++ FD     ++P  N++ +        
Sbjct: 292 HSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQA 351

Query: 156 ----------------------NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
                                 N +++GY E K +   ++L   M    L  D +T+  +
Sbjct: 352 EKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGII 411

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L AC+ L+  + G+QVHAY IR   +  +DV + ++L++MY KCG V    +V+N+    
Sbjct: 412 LAACSRLATIQRGKQVHAYSIRAGHD--SDVHIGAALVDMYAKCGDVKHCYRVYNMIS-- 467

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                N ++V   +ML  Y  +G+ +E I L+  ML +  +PD V F+ V+S+C H G +
Sbjct: 468 -----NPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSL 522

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           ++G E    MV  Y + P  +HY+C+VDLL RAG+L +A++LI  +       +    W 
Sbjct: 523 EIGHECLALMV-AYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVT----WN 577

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL  C    + +LG++AA+K +EL+P+N G YVML+NLYA    W  + Q R+LMK+ G
Sbjct: 578 ALLGGCFIHNEVDLGEIAAEKLIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLMKDMG 637

Query: 434 LKKDVGCSWIE 444
           ++K  GCSWIE
Sbjct: 638 MQKRPGCSWIE 648



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 154/355 (43%), Gaps = 35/355 (9%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            GKQ+ AH  KSG+ +  FV + L+ +YA+     +A  +FD +P++N     ALL  Y 
Sbjct: 66  LGKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVYI 125

Query: 164 EAKLWAGGLELVR--LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           E   +     L    L   + +  D F    +L+ C GL A E GRQ+H   ++   ++ 
Sbjct: 126 EMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKHDGDMK 185

Query: 222 NDVFMQS-----------SLIEMYGKCGLVTKALQVFNLAGHRLEGE-INKDVVLWTSML 269
           +   M S           ++I  Y + G + KA ++F+    R+E E + KD + W SM+
Sbjct: 186 SAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFD----RMEQEGVQKDRISWNSMI 241

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
             Y     F E   L+  +L  G +PD     +V++ C+    ++ G E      H   +
Sbjct: 242 SGYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKE-----AHSLAI 296

Query: 330 EPGPEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
             G +  S     LV++  +  ++  A     +M   G     +  W AL+S    C + 
Sbjct: 297 VRGLQSNSIVGGALVEMYSKCQDIVAA-----QMAFDGVSERDLPTWNALISGYARCNQA 351

Query: 386 ELGKLAAQKALE--LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           E  +   QK      +P NV  +  +   Y +   +D   QL   M+   L+ D+
Sbjct: 352 EKIRELHQKMRRDGFEP-NVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDI 405


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 140/443 (31%), Positives = 239/443 (53%), Gaps = 47/443 (10%)

Query: 39  LTNCLKFL----NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSL 93
           LT+ +K L      R+ + +NV+IS + +      A+  F  M    G+  D   + S+L
Sbjct: 187 LTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTL 246

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           +A T++K    GK++  +V  +   + + +G+AL+D+Y K   +  A  +F+E+P KN +
Sbjct: 247 SACTALKRLELGKKIHHYVRDNVKFTPI-IGNALLDMYCKCGCLSIARAVFEEMPSKNVI 305

Query: 154 CANALLSGYC------EAK------------LWAG-------------GLELVRLMPALG 182
           C   ++SGY       EA+            +W                + L R M    
Sbjct: 306 CWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRK 365

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D F + +LL  CA   A E G+ +H ++      +  D  + ++LIEMY KCG + K
Sbjct: 366 VKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDEN--RIPIDAVVGTALIEMYAKCGFIEK 423

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
           AL++F   G R+     KD   WTS++     NG   + ++L+  M   G +PD++ F+ 
Sbjct: 424 ALEIF--YGLRV-----KDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIG 476

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           V+SACSH G V+ G ++F  M  +Y+++P  EHY CLVDLL RAG L++A +LI ++ D 
Sbjct: 477 VLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDE 536

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422
            + + +V ++G+LLSAC   G  E+G+  A++ ++ +  +  ++ +L+N+YA    W+++
Sbjct: 537 -NKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDV 595

Query: 423 GQLRELMKEKGLKKDVGCSWIEV 445
            ++R  MK+ G+KK  GCS IEV
Sbjct: 596 TKVRRKMKDLGVKKTPGCSSIEV 618



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 200/423 (47%), Gaps = 44/423 (10%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA  F  GL     I+  ++LM  + T     NL       K++     L +N++I  
Sbjct: 55  QIHAQIFRVGLHQD--IVSLNKLM-AFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKA 111

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F + G+    L  FS +   G++ D +       A   + +    ++++  VTK+G    
Sbjct: 112 FAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFD 171

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV-RLMP 179
            +V ++LID+YA+L L    +++FDE+P ++ +  N ++SGY + + +   + +  R+  
Sbjct: 172 TYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQE 231

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
             GL  D  T+ + L AC  L   E G+++H Y +R   N+     + ++L++MY KCG 
Sbjct: 232 ESGLMPDEATVVSTLSACTALKRLELGKKIHHY-VRD--NVKFTPIIGNALLDMYCKCGC 288

Query: 240 VTKALQVFN-------------LAGHR-----------LEGEINKDVVLWTSMLGVYGRN 275
           ++ A  VF              ++G+             EG   +DVV+WT+M+  Y + 
Sbjct: 289 LSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQF 348

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
             F E + L+  M +   KPD+   V++++ C+ TG ++ G ++    + + ++      
Sbjct: 349 NRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQG-KWIHEFIDENRIPIDAVV 407

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKA 395
            + L+++  + G ++KA ++       G      + W +++     CG    GK +  KA
Sbjct: 408 GTALIEMYAKCGFIEKALEIF-----YGLRVKDTASWTSII-----CGLAMNGKTS--KA 455

Query: 396 LEL 398
           LEL
Sbjct: 456 LEL 458


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 135/421 (32%), Positives = 222/421 (52%), Gaps = 38/421 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR--FGK 106
           R+ + +N+++S + R G  + A + F    V  +F  T A+ S    +  +++AR  F  
Sbjct: 97  RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWT-AVVSGYAQNGMLEEARRVFDA 155

Query: 107 QVQAHVTKSGWLSSVFVGSALIDL----------------------YAKLLLIHDAELMF 144
             + +      + + ++   ++D                       YA+  ++ +A+ +F
Sbjct: 156 MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 215

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +P K++V   A+L+ Y +       L+L   M   G   +    + +L  CA ++A E
Sbjct: 216 DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALE 275

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G Q+H  +IR    +G   F+ ++L+ MY KCG +  A   F       E    +DVV 
Sbjct: 276 CGMQLHGRLIRAGYGVG--CFVGNALLAMYFKCGNMEDARNAF-------EEMEERDVVS 326

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +M+  Y R+G+ KE +++++ M    TKPD++  V V++ACSH+G V+ GI YF  M 
Sbjct: 327 WNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMH 386

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           HD+ +   PEHY+C++DLL RAG L +A  L+ +M          +MWGALL A      
Sbjct: 387 HDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDM----PFEPDSTMWGALLGASRIHRN 442

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            ELG+ AA+K  EL+P N G+YV+LSN+YA    W +  ++R +M+E+G+KK  G SWIE
Sbjct: 443 PELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIE 502

Query: 445 V 445
           V
Sbjct: 503 V 503



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 162/396 (40%), Gaps = 66/396 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +NV+IS    +G  L +L      H   +  +  A+  +   +  V++ R  +  
Sbjct: 4   RDSVTYNVMISSHANHG--LVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRVEEAR 57

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
               +++ W   V   +AL+  Y +   + +A  +FD +P ++ V  N ++SGY      
Sbjct: 58  GLFNSRTEW--DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR--- 112

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH----------------AY 212
              +E  RL  A  +  D FT +A++   A     E  R+V                 AY
Sbjct: 113 GDMVEARRLFDAAPV-RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAY 171

Query: 213 MIRKCCNLGNDVFMQ---------SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           + R+  +   ++F           ++++  Y + G++ +A  VF+           KD V
Sbjct: 172 IQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ-------KDAV 224

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W +ML  Y + G  +E ++L+  M   G   +  AF  V+S C+    ++ G++     
Sbjct: 225 SWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ----- 279

Query: 324 VHDYKLEPGPEHY-------SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +H   +  G   Y       + L+ +  + G ++ A     EM +R      V  W  ++
Sbjct: 280 LHGRLIRAG---YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER-----DVVSWNTMI 331

Query: 377 S--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +  A H  GK  L      +     P ++ +  +L+
Sbjct: 332 AGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 367



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 30/210 (14%)

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D    + +I  +   GLV+ A   F+LA         KD V W  ML  Y RNG  +E  
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPE-------KDAVSWNGMLAAYVRNGRVEEAR 57

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE--HYSCLV 340
            L+ +     T+ D +++  ++S     G++    E F+ M       PG +   ++ +V
Sbjct: 58  GLFNSR----TEWDVISWNALMSGYVQWGKMSEARELFDRM-------PGRDVVSWNIMV 106

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
               R G++ +A +L +    R      V  W A++S     G  E     A++  +  P
Sbjct: 107 SGYARRGDMVEARRLFDAAPVR-----DVFTWTAVVSGYAQNGMLE----EARRVFDAMP 157

Query: 401 -HNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
             N   +  +   Y +  M DE  +L  +M
Sbjct: 158 ERNAVSWNAMVAAYIQRRMMDEAKELFNMM 187


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/425 (33%), Positives = 228/425 (53%), Gaps = 24/425 (5%)

Query: 29  TCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDT 86
            C    N+         L   N    N  +    +N    +A++ F+      +    D 
Sbjct: 33  ACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDE 92

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           +   S L A   +     G+++ A VTK G+ S++FV ++LID+Y K   +  A  +FDE
Sbjct: 93  FTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDE 152

Query: 147 IPVK--NSVCANALLSGYCEAKLWAGGLELVRLMPALG-LDYDHFTLSALLRACAGLSAA 203
           + V+  N VC NA+++GY + + ++  +E+ R+M   G +  +  TL ++L ACA L A 
Sbjct: 153 MFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGAL 212

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           + G+ +  ++ R+   LG  +F+ ++L +MY KCG +T+A +VFN    ++E    +DV+
Sbjct: 213 DLGKWIDGFISRREMALG--LFLGNALADMYAKCGCITEARRVFN----KME---ERDVI 263

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W+ ++      G+  E    +  ML  G KP++V F+ +++AC+H G VK G+  F  M
Sbjct: 264 SWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTM 323

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC---H 380
             +Y + P  EHY C+VDLL RAGELDKA  +I+ M  +     +V +WGALL  C    
Sbjct: 324 DKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMK----PNVIIWGALLGGCRIYR 379

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
           D G+   G+   Q  LELD  + G YV L+N+Y+     D+  + R  M+E G+ K  GC
Sbjct: 380 DSGR---GQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGC 436

Query: 441 SWIEV 445
           SWIEV
Sbjct: 437 SWIEV 441


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/396 (32%), Positives = 222/396 (56%), Gaps = 12/396 (3%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N +   + R G+   AL+  S M   G  LD+ AL   L A + + DA+ GK++ 
Sbjct: 301 NIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIH 360

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           +   +S +     V +ALI +Y++   +  A L+F  +  K+ +  N+++SG C      
Sbjct: 361 SFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSE 420

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
               L+R M   G++ ++ T++++L  CA ++  + G++ H YM R+  +  + + + ++
Sbjct: 421 EASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRRE-DFKDHLLLWNA 479

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L++MY + G V +A +VF++ G R       D + +TSM+  YG  G  +  +KL+E M 
Sbjct: 480 LVDMYARSGKVLEARRVFDMLGER-------DKMTYTSMIAGYGMQGEGQAALKLFEEMN 532

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
               KPD +  + V+SACSH+G V  G   FE M   Y L P  EH++C+ DL  RAG L
Sbjct: 533 NFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLL 592

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
           +KA ++I  M  +     + +MW  L+ AC      E+G+ AA+K LE+ P N G YV++
Sbjct: 593 NKAKEIIRNMPYK----PTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLI 648

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +N+YA    W+++ ++R  M++ G++K  GC+W++V
Sbjct: 649 ANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDV 684



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 193/457 (42%), Gaps = 81/457 (17%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           N  +P P+N++IS + RNG    AL  +  M   GI  D +   S L A     D  FGK
Sbjct: 162 NILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGK 221

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           +V   +  S    S+ V +ALI +Y K   +  A  +FD+IP +++V  N+++S Y    
Sbjct: 222 EVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMG 281

Query: 167 LW-----------------------------------AGGLELVRLMPALGLDYDHFTLS 191
           +W                                    G LEL+  M   G   D   L 
Sbjct: 282 MWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALI 341

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
             L AC+ +  A+ G+++H++ IR C   G    ++++LI MY +C  +  A  +F L  
Sbjct: 342 IGLGACSHIGDAKLGKEIHSFAIRSC--FGEVDTVKNALITMYSRCKDLKHAYLLFQL-- 397

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
             +E    K ++ W S++         +E   L   ML+ G +P+ V   +V+  C+   
Sbjct: 398 --MEA---KSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVA 452

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR--------- 362
            ++ G E+  +M      +     ++ LVD+  R+G++ +A ++ + + +R         
Sbjct: 453 NLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMI 512

Query: 363 ------GHGSSSVSMWG---------------ALLSACHDCGKFELGKLAAQKALELDPH 401
                 G G +++ ++                A+LSAC   G    G+L  +K   L   
Sbjct: 513 AGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSL--- 569

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
               Y +  +L    CM D  G+   L K K + +++
Sbjct: 570 ----YGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNM 602



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 150/354 (42%), Gaps = 40/354 (11%)

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIF----LDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           + +F   G+ L A KT S + +H       L  + + S L++ T VK    G+Q+  H+ 
Sbjct: 68  LKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHII 127

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
             G+     +   L+  Y+   L+ DA ++ +   + +    N L+S Y         L 
Sbjct: 128 SLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALS 187

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
             + M   G+  D+FT  ++L+AC       FG++VH  +      +   + + ++LI M
Sbjct: 188 AYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESI--NASRIKWSLIVHNALISM 245

Query: 234 YGKCGLVTKALQVFN----------------------------LAGHRLEGEINKDVVLW 265
           YGKCG V  A  +F+                            L G     +I  ++++W
Sbjct: 246 YGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIW 305

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            ++ G Y R G +K  ++L   M   G+  D VA +  + ACSH G  KLG E   + + 
Sbjct: 306 NTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIR 365

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
               E      + L+ +  R  +L  A+ L   M      + S+  W +++S C
Sbjct: 366 SCFGEVDTVK-NALITMYSRCKDLKHAYLLFQLM-----EAKSLITWNSIISGC 413


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/396 (32%), Positives = 222/396 (56%), Gaps = 12/396 (3%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N +   + R G+   AL+  S M   G  LD+ AL   L A + + DA+ GK++ 
Sbjct: 256 NIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIH 315

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           +   +S +     V +ALI +Y++   +  A L+F  +  K+ +  N+++SG C      
Sbjct: 316 SFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSE 375

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
               L+R M   G++ ++ T++++L  CA ++  + G++ H YM R+  +  + + + ++
Sbjct: 376 EASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRRE-DFKDHLLLWNA 434

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L++MY + G V +A +VF++ G R       D + +TSM+  YG  G  +  +KL+E M 
Sbjct: 435 LVDMYARSGKVLEARRVFDMLGER-------DKMTYTSMIAGYGMQGEGQAALKLFEEMN 487

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
               KPD +  + V+SACSH+G V  G   FE M   Y L P  EH++C+ DL  RAG L
Sbjct: 488 NFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLL 547

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
           +KA ++I  M  +     + +MW  L+ AC      E+G+ AA+K LE+ P N G YV++
Sbjct: 548 NKAKEIIRNMPYK----PTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLI 603

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +N+YA    W+++ ++R  M++ G++K  GC+W++V
Sbjct: 604 ANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDV 639



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 182/426 (42%), Gaps = 64/426 (15%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           N  +P P+N++IS + RNG    AL  +  M   GI  D +   S L A     D  FGK
Sbjct: 162 NILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGK 221

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK----NSVCANALLSGY 162
           +V   +  S              LYA + + ++A  +F  +  +    N +  N +  GY
Sbjct: 222 EVHESINAS--------------LYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGY 267

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                + G LEL+  M   G   D   L   L AC+ +  A+ G+++H++ IR C   G 
Sbjct: 268 LRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSC--FGE 325

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
              ++++LI MY +C  +  A  +F L    +E    K ++ W S++         +E  
Sbjct: 326 VDTVKNALITMYSRCKDLKHAYLLFQL----MEA---KSLITWNSIISGCCHMDRSEEAS 378

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L   ML+ G +P+ V   +V+  C+    ++ G E+  +M      +     ++ LVD+
Sbjct: 379 FLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDM 438

Query: 343 LCRAGELDKAWKLINEMLDR---------------GHGSSSVSMWG-------------- 373
             R+G++ +A ++ + + +R               G G +++ ++               
Sbjct: 439 YARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITM 498

Query: 374 -ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
            A+LSAC   G    G+L  +K   L       Y +  +L    CM D  G+   L K K
Sbjct: 499 IAVLSACSHSGLVTQGQLLFEKMRSL-------YGLTPHLEHFACMTDLFGRAGLLNKAK 551

Query: 433 GLKKDV 438
            + +++
Sbjct: 552 EIIRNM 557



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 141/326 (43%), Gaps = 29/326 (8%)

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIF----LDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           + +F   G+ L A KT S + +H       L  + + S L++ T VK    G+Q+  H+ 
Sbjct: 68  LKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHII 127

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
             G+     +   L+  Y+   L+ DA ++ +   + +    N L+S Y         L 
Sbjct: 128 SLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALS 187

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
             + M   G+  D+FT  ++L+AC       FG++VH                +S    +
Sbjct: 188 AYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVH----------------ESINASL 231

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y   G+  +A ++F   G     +I  ++++W ++ G Y R G +K  ++L   M   G+
Sbjct: 232 YASMGMWNEAFELF---GSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGS 288

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
             D VA +  + ACSH G  KLG E   + +     E      + L+ +  R  +L  A+
Sbjct: 289 HLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVK-NALITMYSRCKDLKHAY 347

Query: 354 KLINEMLDRGHGSSSVSMWGALLSAC 379
            L   M      + S+  W +++S C
Sbjct: 348 LLFQLM-----EAKSLITWNSIISGC 368


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 135/405 (33%), Positives = 207/405 (51%), Gaps = 47/405 (11%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFV-GSALIDLYAKLL 135
           M   G F D   L S ++A   +   R G+QV AH+ K   L    V  +AL+D+YAK  
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYC----------------EAKLWAGGL------- 172
              +A  +FD +P ++ V   ++L+GY                 E  + A  +       
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 120

Query: 173 -----ELVRLMPALGLDY---DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--- 221
                E +RL   L  D     H+T   +L AC  ++  + G+Q H +++++        
Sbjct: 121 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGP 180

Query: 222 -NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            +DVF+ +SL++MY K G +    +VF     R       D V W +M+  Y +NG  K+
Sbjct: 181 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAAR-------DNVSWNAMIVGYAQNGRAKD 233

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            + L+E ML +   PD V  + V+SAC H+G V  G  +F +M  D+ + P  +HY+C+V
Sbjct: 234 ALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMV 293

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RAG L +A +LI +M        SV +W +LL AC      ELG+  A +  ELDP
Sbjct: 294 DLLGRAGHLKEAEELIKDMPTE---PDSV-LWASLLGACRLHKNVELGERTAGRLFELDP 349

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            N G YV+LSN+YA+   W ++ ++R  MK++G+ K  GCSWIE+
Sbjct: 350 ENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEI 394



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 137/324 (42%), Gaps = 56/324 (17%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +NV+I+ + +NG    A++ F  +    I+   Y   + L A  ++   + G+Q 
Sbjct: 106 KNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQA 165

Query: 109 QAHVTKSGWL------SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             HV K G+       S VFVG++L+D+Y K   I D   +F+ +  +++V  NA++ GY
Sbjct: 166 HVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGY 225

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            +       L L   M     + D  T+  +L AC                         
Sbjct: 226 AQNGRAKDALHLFERMLCSNENPDSVTMIGVLSAC------------------------- 260

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
                       G  GLV +  + F+      +  I      +T M+ + GR G+ KE  
Sbjct: 261 ------------GHSGLVDEGRRHFHFMTE--DHGITPSRDHYTCMVDLLGRAGHLKEAE 306

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP---GPEHYSCL 339
           +L + M    T+PD V + +++ AC     V+LG      +   ++L+P   GP  Y  L
Sbjct: 307 ELIKDM---PTEPDSVLWASLLGACRLHKNVELGERTAGRL---FELDPENSGP--YVLL 358

Query: 340 VDLLCRAGELDKAWKLINEMLDRG 363
            ++    G+    +++   M DRG
Sbjct: 359 SNMYAEMGKWADVFRVRRSMKDRG 382


>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Glycine max]
          Length = 678

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/422 (32%), Positives = 213/422 (50%), Gaps = 44/422 (10%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +  NG  + A+  FS M  +G+  D  A+ + L+A++ +      KQ+  +  
Sbjct: 269 WNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAVANILSAASGLLVVELVKQMHVYAC 328

Query: 114 KSGWLSSVFVGSALIDLYAK-------------------LLL------------IHDAEL 142
           K+G    + V S+L+D Y+K                   +LL            I DA+L
Sbjct: 329 KAGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKEYDTILLNTMITVYSNCGRIEDAKL 388

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F+ +P K  +  N++L G  +    +  L +   M  L L  D F+ ++++ ACA  S+
Sbjct: 389 IFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMNKLDLKMDRFSFASVISACACRSS 448

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            E G QV    I     L +D  + +SL++ Y KCG V    +VF       +G +  D 
Sbjct: 449 LELGEQVFGKAIT--IGLESDQIISTSLVDFYCKCGFVEIGRKVF-------DGMVKTDE 499

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V W +ML  Y  NGY  E + L+  M   G  P  + F  V+SAC H+G V+ G   F  
Sbjct: 500 VSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLSACDHSGLVEEGRNLFHT 559

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M H Y + PG EH+SC+VDL  RAG  ++A  LI EM  +    +  +MW ++L  C   
Sbjct: 560 MKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQ----ADANMWLSVLRGCIAH 615

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
           G   +GK+AA++ ++L+P N G Y+ LSN+ A    W+    +RELM++K  +K  GCSW
Sbjct: 616 GNKTIGKMAAEQIIQLEPENTGAYIQLSNILASSGDWEGSALVRELMRDKHFQKIPGCSW 675

Query: 443 IE 444
            +
Sbjct: 676 AD 677



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 165/420 (39%), Gaps = 84/420 (20%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H    +TG+L   + +  +RL+  Y+ CR   NL   ++    +   N   +N ++   
Sbjct: 22  LHVAFLKTGILNSSVAV-ANRLLQLYSRCR---NLQDASHLFDEMPQTNSFSWNTLVQAH 77

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +G    AL  F+ M                                 H T   W    
Sbjct: 78  LNSGHTHSALHLFNAM--------------------------------PHKTHFSW---- 101

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM--- 178
              + ++  +AK   +  A  +F+ +P KN +  N+++  Y         L L + M   
Sbjct: 102 ---NMVVSAFAKSGHLQLAHSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLD 158

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
           P+  +  D F L+  L ACA   A   G+QVHA +      L  D  + SSLI +YGKCG
Sbjct: 159 PSQIVYRDAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCG 218

Query: 239 LVTKALQVFNL------------------AGHRLEG------EINKDVVLWTSMLGVYGR 274
            +  A ++ +                   AG   E       +++   VLW S++  Y  
Sbjct: 219 DLDSAARIVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVS 278

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           NG   E + L+ AML NG + D  A   ++SA S      L +E  + M H Y  + G  
Sbjct: 279 NGEEVEAVNLFSAMLRNGVQGDASAVANILSAASGL----LVVELVKQM-HVYACKAGVT 333

Query: 335 H----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
           H     S L+D   +     +A KL +E+ +         +   +++   +CG+ E  KL
Sbjct: 334 HDIVVASSLLDAYSKCQSPCEACKLFSELKEY-----DTILLNTMITVYSNCGRIEDAKL 388



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/348 (20%), Positives = 134/348 (38%), Gaps = 50/348 (14%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           I  + ++  Y+ C   ++   + N +     +  + +N ++    +N  P  AL  FS M
Sbjct: 368 ILLNTMITVYSNCGRIEDAKLIFNTMP---SKTLISWNSILVGLTQNACPSEALNIFSQM 424

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
           +   + +D ++  S ++A         G+QV       G  S   + ++L+D Y K   +
Sbjct: 425 NKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFV 484

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
                +FD +   + V  N +L GY         L L   M   G+     T + +L AC
Sbjct: 485 EIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLSAC 544

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
                                                   GLV +   +F+   H     
Sbjct: 545 -------------------------------------DHSGLVEEGRNLFHTMKHSY--N 565

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
           IN  +  ++ M+ ++ R GYF+E + L E M     + D   +++V+  C   G   +G 
Sbjct: 566 INPGIEHFSCMVDLFARAGYFEEAMDLIEEMPF---QADANMWLSVLRGCIAHGNKTIGK 622

Query: 318 EYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
              E ++   +LEP     Y  L ++L  +G+ + +  L+ E++   H
Sbjct: 623 MAAEQII---QLEPENTGAYIQLSNILASSGDWEGS-ALVRELMRDKH 666



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 58/292 (19%)

Query: 103 RFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           R G+Q+     K+G L SSV V + L+ LY++   + DA  +FDE+P  NS   N L+  
Sbjct: 17  REGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTLVQA 76

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           +  +      L L   MP       HF+ + ++ A                         
Sbjct: 77  HLNSGHTHSALHLFNAMP----HKTHFSWNMVVSA------------------------- 107

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
                       + K G +  A  +FN          +K+ ++W S++  Y R+G+  + 
Sbjct: 108 ------------FAKSGHLQLAHSLFN-------AMPSKNHLVWNSIIHSYSRHGHPGKA 148

Query: 282 IKLYEAMLMNGTK---PDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLEPGPEHYS 337
           + L+++M ++ ++    D     T + AC+ +  +  G + +    V    LE      S
Sbjct: 149 LFLFKSMNLDPSQIVYRDAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCS 208

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
            L++L  + G+LD A ++++ + D    S S     AL+S   + G+    +
Sbjct: 209 SLINLYGKCGDLDSAARIVSFVRDVDEFSLS-----ALISGYANAGRMREAR 255


>gi|221327716|gb|ACM17537.1| putative pentatricopeptide [Oryza australiensis]
          Length = 470

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/435 (31%), Positives = 230/435 (52%), Gaps = 29/435 (6%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLP----FNVVISDFCRNGSPLYALKTF 74
            ++ L+L Y  C  ++    + +       R P P    +NV+++       P YA++ F
Sbjct: 43  LETDLVLLYCRCGERERARRVFD-------RMPAPSMHAYNVLLA----ASPPRYAMEIF 91

Query: 75  SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
           S +    +  D Y++ + + A T + DA  G  +     + G +++V V +A +D+YAK 
Sbjct: 92  SRLLAADLLPDRYSVPAMVRACTELPDAVLGAVIHGFAVRLGLMANVVVAAAFLDMYAKA 151

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL--MPALGLDYDHFTLSA 192
           +L+ DA  +FDE+P ++++  N +++GY  A   A   ++     + A+ +      + +
Sbjct: 152 VLLDDAVRVFDEMPERDAIVWNCMVTGYARAGRAAETFDIFSRAQVEAVNIVNGLQAVPS 211

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L  CA  S    GR++H  M+R C    +D+ + ++LI MY KCG V  +  VF+    
Sbjct: 212 VLNICAKESELMKGREIHGMMVR-CLAFDSDIAVGNALINMYAKCGRVNVSQAVFS---- 266

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
              G   +DVV W++M+  Y  +G  ++ +K+Y  ML  G KP+ + F +V+S+CSH+G 
Sbjct: 267 ---GMQERDVVSWSTMIHSYSIHGKGEQALKVYMEMLSQGVKPNWITFTSVLSSCSHSGL 323

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           V  G + FE M   + + P  EHY+C+VDLL RAG +++A  LI +M          S+W
Sbjct: 324 VTEGQKIFESMTKVHGVHPATEHYACMVDLLGRAGAIEEAVGLIRKM----PMEPCASVW 379

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
           GALLSAC      ++G++AA +  EL+  +   YV L  +Y      D +  LR  M+E 
Sbjct: 380 GALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTLCGIYDAVGQSDGVAGLRSRMREL 439

Query: 433 GLKKDVGCSWIEVTG 447
           G+ K   CS I+V G
Sbjct: 440 GMVKTPACSRIDVKG 454



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 127/290 (43%), Gaps = 28/290 (9%)

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
           R G Q  A     GWL    + + L+ LY +      A  +FD +P  +    N LL+  
Sbjct: 23  RPGAQAHARAVVGGWLPDATLETDLVLLYCRCGERERARRVFDRMPAPSMHAYNVLLA-- 80

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
             A      +E+   + A  L  D +++ A++RAC  L  A  G  +H + +R    L  
Sbjct: 81  --ASPPRYAMEIFSRLLAADLLPDRYSVPAMVRACTELPDAVLGAVIHGFAVR--LGLMA 136

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           +V + ++ ++MY K  L+  A++VF+    R       D ++W  M+  Y R G   E  
Sbjct: 137 NVVVAAAFLDMYAKAVLLDDAVRVFDEMPER-------DAIVWNCMVTGYARAGRAAETF 189

Query: 283 KLY-----EAM-LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
            ++     EA+ ++NG +    A  +V++ C+   ++  G E    MV     +      
Sbjct: 190 DIFSRAQVEAVNIVNGLQ----AVPSVLNICAKESELMKGREIHGMMVRCLAFDSDIAVG 245

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           + L+++  + G ++ +  + + M +R      V  W  ++ +    GK E
Sbjct: 246 NALINMYAKCGRVNVSQAVFSGMQER-----DVVSWSTMIHSYSIHGKGE 290


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 222/400 (55%), Gaps = 13/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N++I+ + R G P   L+ F  M   GI  D +     +++   +K   +GKQ 
Sbjct: 290 KDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQT 349

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            AH+ ++G  S V V ++LID+Y +  ++  A  +F+ +  K+ +  +A++ GY +    
Sbjct: 350 HAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQS 409

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M + G+  D   +  +L A   + A E  + +H Y ++    L +   + +
Sbjct: 410 LTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMK--LGLTSLPSLNT 467

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +L+  Y KCG +  A ++F       E +I+ KD+++W SM+  +  +G + +  KLY  
Sbjct: 468 ALLITYAKCGSIEMAQRLFE------EEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNR 521

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M  + +KPD+V F+ +++AC ++G V+ G E+F+ M   Y  +P  EHY+C+V+LL RAG
Sbjct: 522 MKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAG 581

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            + +A +L+  M  +        +WG LLSAC      +L + AA+K + ++P N G Y+
Sbjct: 582 LISEAGELVKNMPIK----PDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYI 637

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+YA    WD + ++R  ++ KGLKK  GCSW+E+ G
Sbjct: 638 LLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEING 677



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 151/319 (47%), Gaps = 23/319 (7%)

Query: 64  NGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFV 123
           NG  ++  + F  M    +  D++   + L     +   +  K V      S     + V
Sbjct: 206 NGEGIF--RVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLV 263

Query: 124 GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL 183
            +A++ LY+KL  + DA  +FD++P K+ V  N +++ Y         LEL + M   G+
Sbjct: 264 NTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGI 323

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
             D FT   ++ + A L   ++G+Q HA+++R   +  + V + +SLI+MY +C ++  A
Sbjct: 324 RSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSD--SQVSVHNSLIDMYCECKILDSA 381

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
            ++FN          +K V+ W++M+  Y +NG     + L+  M  +G + D V  + +
Sbjct: 382 CKIFNWM-------TDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINI 434

Query: 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEM 359
           + A  H G ++  ++Y    +H Y ++ G    P   + L+    + G ++ A +L  E 
Sbjct: 435 LPAFVHIGALE-NVKY----LHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEE- 488

Query: 360 LDRGHGSSSVSMWGALLSA 378
                    + MW +++SA
Sbjct: 489 --EKIDDKDLIMWNSMISA 505



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 156/350 (44%), Gaps = 28/350 (8%)

Query: 35  NLGTLTNCLKF----LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALC 90
           NLG L + L+     ++P   L FN ++ +  R G     L  +  M    +  D     
Sbjct: 71  NLGLLNHSLQVFCSVIDPNLTL-FNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYP 129

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
             L + +S  +  FG+ +  ++ K G+     V +AL ++Y + +   +A  +FD+  VK
Sbjct: 130 FVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDKRSVK 189

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           +    ++L +   +     G   +   M A  L  D FT   LLR  AGL++ +  + VH
Sbjct: 190 DLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVH 249

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
              I     L  D+ + ++++ +Y K   +  A ++F+           KD V+W  M+ 
Sbjct: 250 CIAI--VSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPE-------KDRVVWNIMIA 300

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y R G   E ++L+++M  +G + D    + VIS+ +    V  G +      H + L 
Sbjct: 301 AYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQ-----THAHILR 355

Query: 331 PGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            G +     ++ L+D+ C    LD A K+ N M D+     SV  W A++
Sbjct: 356 NGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDK-----SVISWSAMI 400



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 20/243 (8%)

Query: 82  IFLDTYALCSSLTASTSVKDARFG-----KQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           IFL+  A  S L  + S+  +R       +Q+ A     G+  +  + S LID YA L L
Sbjct: 15  IFLNFPATQSRLLNTLSLLFSRCNSIQHLQQIHARFILHGFHQNPTLSSKLIDCYANLGL 74

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           ++ +  +F  +   N    NA+L            L + + M A  +  D  T   +LR+
Sbjct: 75  LNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRS 134

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVF--MQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
           C+  S   FGR +H Y+++    LG D+F  + ++L EMY +C     A Q+F+    + 
Sbjct: 135 CSSFSNVGFGRTIHGYLVK----LGFDLFDVVATALAEMYEECIEFENAHQLFDKRSVKD 190

Query: 255 EGEINKDVVLWTSMLGVYG-RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
            G        W S L   G +N   + + +++  M+     PD   F  ++   +    +
Sbjct: 191 LG--------WPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSI 242

Query: 314 KLG 316
           +L 
Sbjct: 243 QLA 245



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 11/240 (4%)

Query: 34  KNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           K L +      ++  ++ + ++ +I  + +NG  L AL  FS M   GI  D   + + L
Sbjct: 376 KILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINIL 435

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE--IPVKN 151
            A   +      K +  +  K G  S   + +AL+  YAK   I  A+ +F+E  I  K+
Sbjct: 436 PAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKD 495

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            +  N+++S +     W+   +L   M       D  T   LL AC      E G++   
Sbjct: 496 LIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFK 555

Query: 212 YMIRKC-CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            M     C    + +  + ++ + G+ GL+++A ++           I  D  +W  +L 
Sbjct: 556 EMTESYGCQPSQEHY--ACMVNLLGRAGLISEAGELVK------NMPIKPDARVWGPLLS 607


>gi|413925046|gb|AFW64978.1| hypothetical protein ZEAMMB73_457124 [Zea mays]
          Length = 592

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 210/380 (55%), Gaps = 20/380 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS + R G P  AL+ F  M    + LD   L ++L AS     A+ G+   + V 
Sbjct: 28  WNTIISGYLRCGMPNKALQAFGQMVKEPVRLDDVTLLNALVASAKAGKAKVGRLCHSLVV 87

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            +G   + ++GS+LI +YAK  L+ DA  +F  +  +N VC  +++SGY +   +   ++
Sbjct: 88  VNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKKAVD 147

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN---LGNDVFMQSSL 230
           L R M   G+  D  T++ ++ +CA + A + GR VHAY     C+   LG ++ +++SL
Sbjct: 148 LFRDMQITGMKADDGTIATVVSSCAQMGALDLGRYVHAY-----CDVHGLGKELSVKNSL 202

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           I+MY KCG +TKA ++F        G   +DV  WT+M+  +  NG   E + L+  M  
Sbjct: 203 IDMYSKCGDITKAHEIFC-------GLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQMEG 255

Query: 291 NG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
            G   P+EV F+ V+++CSH G V+ G  +F+ M   Y L P  EHY C+VDLL RA  L
Sbjct: 256 EGKVMPNEVTFLGVLTSCSHGGLVEQGFHHFQRMSMVYNLAPRIEHYGCMVDLLGRAKLL 315

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
            +A + IN M      +  V +W +LL AC  CG+  L +  A++ LEL+P     +V+L
Sbjct: 316 TEAEQFINGM----PIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAGHVLL 371

Query: 410 SNLYAKFCMWDEIGQLRELM 429
           SN+YA    W ++ +LR  M
Sbjct: 372 SNVYAATSRWVDVNKLRTSM 391



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN + +  +IS + + G    A+  F  M + G+  D   + + +++   +     G
Sbjct: 121 MHERNVVCWTSMISGYTQLGKFKKAVDLFRDMQITGMKADDGTIATVVSSCAQMGALDLG 180

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + V A+    G    + V ++LID+Y+K   I  A  +F  +  ++     A++ G+   
Sbjct: 181 RYVHAYCDVHGLGKELSVKNSLIDMYSKCGDITKAHEIFCGLTKRDVFSWTAMIMGFTVN 240

Query: 166 KLWAGGLELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            L    L+L   M   G +  +  T   +L +C+     E G   H   +    NL   +
Sbjct: 241 GLCNEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFH-HFQRMSMVYNLAPRI 299

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
                ++++ G+  L+T+A Q  N         I  DVV+W S+L
Sbjct: 300 EHYGCMVDLLGRAKLLTEAEQFINGM------PIAPDVVVWRSLL 338



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 15/156 (9%)

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY  C   T A QV + A    +G    D V W +++  Y R G   + ++ +  M+   
Sbjct: 1   MYSSCSYPTTARQVLDSAP---QGAC--DTVSWNTIISGYLRCGMPNKALQAFGQMVKEP 55

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELD 350
            + D+V  +  + A +  G+ K+G      +V +     G   Y  S L+ +  + G ++
Sbjct: 56  VRLDDVTLLNALVASAKAGKAKVGRLCHSLVVVN---GAGINCYMGSSLISMYAKCGLVE 112

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            A K+ + M +R     +V  W +++S     GKF+
Sbjct: 113 DARKVFHGMHER-----NVVCWTSMISGYTQLGKFK 143


>gi|449459276|ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 502

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 133/408 (32%), Positives = 218/408 (53%), Gaps = 14/408 (3%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N    +  RN   +N++I+ +  N     AL  F+     G   D Y L     AS  + 
Sbjct: 63  NVFDKMAHRNMHSWNILIASYVHNSFYFDALNVFNEFRHLGFLPDHYTLPQMFKASVGIG 122

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           DA  GK++     K G++  V VGS ++D YAK  ++ DA  +FD++  K++V  N+++S
Sbjct: 123 DAYLGKRLHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKVFDDMIFKDTVSWNSMIS 182

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           GY  A ++   L+  + M   G + D  T+ ++L AC G      G+++H  ++ K    
Sbjct: 183 GYGRAGVYMDALDCFKRMLLEGANMDFMTIPSVLNACGGEGDLRKGKEIHC-LVLKSPVF 241

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
             DV + +SLI+MY KCG +  + +VF N++  RL      ++V WT+M+  YG +G  +
Sbjct: 242 AADVAVGNSLIDMYSKCGSLLNSEKVFWNMS--RL------NIVTWTTMISCYGAHGKGE 293

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           + + L+  M   G +P+ V    ++++CSH G +  G   F+ ++ D K+EP  EHY+C 
Sbjct: 294 KSLVLFNKMKDCGIQPNSVTLTAILASCSHAGYINEGWRIFQSIISDNKVEPTVEHYACA 353

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL R G L +A+ LI  M  +    ++ S+WGALLS C      E G++AA +  +L+
Sbjct: 354 VDLLSRFGFLKEAFLLIRNMKVK----AAASIWGALLSGCMIHRNLEFGEIAANQLFKLE 409

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           P N   ++ L ++Y    M   +   RE M++ GL K  GCS I + G
Sbjct: 410 PTNPSNFIALISIYESLGMTHGVSLTREKMRDLGLTKVPGCSCIIIDG 457



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 142/309 (45%), Gaps = 16/309 (5%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            KQ  A +   G+L  + + + L+ +Y K   +HDA  +FD++  +N    N L++ Y  
Sbjct: 26  AKQAHAQILIHGFLPHLTLLTDLLLVYCKCGFLHDARNVFDKMAHRNMHSWNILIASYVH 85

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
              +   L +      LG   DH+TL  + +A  G+  A  G+++H + I+        V
Sbjct: 86  NSFYFDALNVFNEFRHLGFLPDHYTLPQMFKASVGIGDAYLGKRLHCWTIK--LGFVGYV 143

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + S++++ Y KCG+V  A +VF       +  I KD V W SM+  YGR G + + +  
Sbjct: 144 VVGSTVLDFYAKCGIVGDARKVF-------DDMIFKDTVSWNSMISGYGRAGVYMDALDC 196

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           ++ ML+ G   D +   +V++AC   G ++ G E    ++            + L+D+  
Sbjct: 197 FKRMLLEGANMDFMTIPSVLNACGGEGDLRKGKEIHCLVLKSPVFAADVAVGNSLIDMYS 256

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHN 402
           + G L  + K+   M        ++  W  ++S    H  G+  L      K   + P++
Sbjct: 257 KCGSLLNSEKVFWNM-----SRLNIVTWTTMISCYGAHGKGEKSLVLFNKMKDCGIQPNS 311

Query: 403 VGIYVMLSN 411
           V +  +L++
Sbjct: 312 VTLTAILAS 320



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 100/238 (42%), Gaps = 24/238 (10%)

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
           + L +     S +LR+CA   A    +Q HA ++         + + + L+ +Y KCG +
Sbjct: 1   MSLSHSTSRFSFVLRSCAQSYAIAQAKQAHAQILIH--GFLPHLTLLTDLLLVYCKCGFL 58

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A  VF+   HR       ++  W  ++  Y  N ++ + + ++      G  PD    
Sbjct: 59  HDARNVFDKMAHR-------NMHSWNILIASYVHNSFYFDALNVFNEFRHLGFLPDHYTL 111

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLI 356
             +  A      V +G  Y    +H + ++ G   Y    S ++D   + G +  A K+ 
Sbjct: 112 PQMFKA-----SVGIGDAYLGKRLHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKVF 166

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
           ++M+ +     +VS W +++S     G + +  L   K + L+  N+    + S L A
Sbjct: 167 DDMIFK----DTVS-WNSMISGYGRAGVY-MDALDCFKRMLLEGANMDFMTIPSVLNA 218


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 139/436 (31%), Positives = 223/436 (51%), Gaps = 56/436 (12%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            K +  ++ + +  +I+ + R G    A + ++ M    I   T AL S L  +  + +A
Sbjct: 289 FKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQT-ALMSGLIQNGRIDEA 347

Query: 103 -RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
            +   ++ AH         V   +++I  Y++   + +A  +F ++P+KNSV  N ++SG
Sbjct: 348 DQMFSRIGAH--------DVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISG 399

Query: 162 YCEA-------------------------------KLWAGGLELVRLMPALGLDYDHFTL 190
           Y +A                                L+   L+ + +M   G   D  T 
Sbjct: 400 YAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTF 459

Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           +  L ACA L+A + G Q+H Y+++      ND+F+ ++LI MY KCG V  A QVF   
Sbjct: 460 ACTLSACANLAALQVGNQLHEYILK--SGYMNDLFVGNALIAMYAKCGRVQSAEQVFR-- 515

Query: 251 GHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                 +I   D++ W S++  Y  NGY  +  K +E M      PDEV F+ ++SACSH
Sbjct: 516 ------DIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSH 569

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
            G    G++ F+ M+ D+ +EP  EHYSCLVDLL R G L++A+  +  M  +    ++ 
Sbjct: 570 AGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVK----ANA 625

Query: 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
            +WG+LL AC      ELG+ AA++  EL+PHN   Y+ LSN++A+   W+E+ ++R LM
Sbjct: 626 GLWGSLLGACRVHKNLELGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLM 685

Query: 430 KEKGLKKDVGCSWIEV 445
           + K   K  GCSWIEV
Sbjct: 686 RGKRAGKQPGCSWIEV 701



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 7/232 (3%)

Query: 40  TNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           T   + +  +N + +N +I+ F +N   L ALK+   M   G   D      +L+A  ++
Sbjct: 410 TEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANL 469

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
              + G Q+  ++ KSG+++ +FVG+ALI +YAK   +  AE +F +I   + +  N+L+
Sbjct: 470 AALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLI 529

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           SGY          +    M +  +  D  T   +L AC+    A  G  +   MI     
Sbjct: 530 SGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFA- 588

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           +       S L+++ G+ G + +A     + G +++     +  LW S+LG 
Sbjct: 589 IEPLAEHYSCLVDLLGRVGRLEEAFNT--VRGMKVKA----NAGLWGSLLGA 634



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 132/310 (42%), Gaps = 68/310 (21%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           +++I + AK   I DA  +FD++ ++N V  N +++GY    +     EL  +MP    +
Sbjct: 52  NSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMP----E 107

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D+F+  AL+  C                                    Y + G + KA 
Sbjct: 108 RDNFSW-ALMITC------------------------------------YTRKGKLEKAR 130

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           ++  L   +L      D   W +M+  Y + G F +  K++E M       D V++ +++
Sbjct: 131 ELLELVPDKL------DTACWNAMIAGYAKKGQFNDAKKVFEQM----PAKDLVSYNSML 180

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           +  +  G++ L +++FE M      E     ++ +V    ++G+L  AW+L  ++ +   
Sbjct: 181 AGYTQNGKMHLALQFFESMT-----ERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPN--- 232

Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKAL--ELDPHNVGIYVMLSNLYAKFCMWDEI 422
             ++VS W  +L     CG  + GK+A  + L   +   NV  +  +   Y +    DE 
Sbjct: 233 -PNAVS-WVTML-----CGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEA 285

Query: 423 GQLRELMKEK 432
            +L + M  K
Sbjct: 286 VKLFKKMPHK 295



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 132/312 (42%), Gaps = 49/312 (15%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RN + +N++++ + ++G    A + F  +           LC           A++G
Sbjct: 199 MTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGL---------AKYG 249

Query: 106 KQVQAHVTKSGWLSSVFVG-SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           K  +A        S   V  +A+I  Y + L + +A  +F ++P K+SV    +++GY  
Sbjct: 250 KMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIR 309

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                   ++   MP   +      +S L++      A +   ++ A+          DV
Sbjct: 310 VGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAH----------DV 359

Query: 225 FMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEIN-----------K 260
              +S+I  Y + G + +AL +F              ++G+   G+++           K
Sbjct: 360 VCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREK 419

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           ++V W S++  + +N  + + +K    M   G KPD+  F   +SAC++   +++G +  
Sbjct: 420 NIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQ-- 477

Query: 321 EWMVHDYKLEPG 332
              +H+Y L+ G
Sbjct: 478 ---LHEYILKSG 486


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 227/445 (51%), Gaps = 20/445 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H H    G   +  +   + L   YT C   ++   L    + ++ R+ + +  +I  +
Sbjct: 231 IHTHVIVRGF--VTTLCVANSLATMYTECGEMQDGLCL---FENMSERDVVSWTSLIVAY 285

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            R G  + A++TF  M    +  +     S  +A  S+    +G+Q+  +V   G   S+
Sbjct: 286 KRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSL 345

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            V ++++ +Y+    +  A ++F  +  ++ +  + ++ GYC+A     G +    M   
Sbjct: 346 SVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQS 405

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G     F L++LL     ++  E GRQVHA  +  C  L  +  ++SSLI MY KCG + 
Sbjct: 406 GTKPTDFALASLLSVSGNMAVIEGGRQVHALAL--CFGLEQNSTVRSSLINMYSKCGSIK 463

Query: 242 KALQVFNLAGHRLEGEINKD-VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
           +A  +F        GE ++D +V  T+M+  Y  +G  KE I L+E  L  G +PD V F
Sbjct: 464 EASMIF--------GETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTF 515

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           ++V++AC+H+GQ+ LG  YF  M   Y + P  EHY C+VDLLCRAG L  A K+INEM 
Sbjct: 516 ISVLTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMS 575

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
            +        +W  LL AC   G  E G+ AA++ LELDP      V L+N+Y+     +
Sbjct: 576 WKKDD----VVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLE 631

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
           E   +R+ MK KG+ K+ G S I++
Sbjct: 632 EAANVRKNMKAKGVIKEPGWSSIKI 656



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 147/309 (47%), Gaps = 17/309 (5%)

Query: 16  LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLP------FNVVISDFCRNGSPLY 69
           ++   +++M+ +    H ++L    N        + +P      +  +I  +    +   
Sbjct: 30  IVRISNQVMVKFDPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDE 89

Query: 70  ALKTFSFMHV--HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSAL 127
           AL  FS M V  H +  DT  L   L A     +  +G+ + A+  K+  LSSV+VGS+L
Sbjct: 90  ALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSL 149

Query: 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
           +D+Y ++  I  +  +F E+P +N+V   A+++G   A  +  GL     M       D 
Sbjct: 150 LDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDT 209

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
           +T +  L+ACAGL   ++G+ +H ++I +       + + +SL  MY +CG +   L +F
Sbjct: 210 YTFAIALKACAGLRQVKYGKAIHTHVIVR--GFVTTLCVANSLATMYTECGEMQDGLCLF 267

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
                  E    +DVV WTS++  Y R G   + ++ +  M  +   P+E  F ++ SAC
Sbjct: 268 -------ENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSAC 320

Query: 308 SHTGQVKLG 316
           +   ++  G
Sbjct: 321 ASLSRLVWG 329



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 167/369 (45%), Gaps = 30/369 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVV 57
           ++HA+  +T LL    +   S L+  Y      K +G +    +  +    RN + +  +
Sbjct: 129 SLHAYAVKTSLL--SSVYVGSSLLDMY------KRVGKIDKSCRVFSEMPFRNAVTWTAI 180

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+     G     L  FS M       DTY    +L A   ++  ++GK +  HV   G+
Sbjct: 181 ITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGF 240

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           ++++ V ++L  +Y +   + D   +F+ +  ++ V   +L+  Y         +E    
Sbjct: 241 VTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIK 300

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M    +  +  T +++  ACA LS   +G Q+H  ++     L + + + +S+++MY  C
Sbjct: 301 MRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVL--SLGLNDSLSVSNSMMKMYSTC 358

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G +  A  +F       +G   +D++ W++++G Y + G+ +E  K +  M  +GTKP +
Sbjct: 359 GNLVSASVLF-------QGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTD 411

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHD----YKLEPGPEHYSCLVDLLCRAGELDKAW 353
            A  +++S   +   ++ G +     VH     + LE      S L+++  + G + +A 
Sbjct: 412 FALASLLSVSGNMAVIEGGRQ-----VHALALCFGLEQNSTVRSSLINMYSKCGSIKEAS 466

Query: 354 KLINEMLDR 362
            +  E  DR
Sbjct: 467 MIFGET-DR 474



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 15/153 (9%)

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM--NGTKP 295
           G +  A QVF+   H        D+V WTS++  Y       E + L+ AM +  +   P
Sbjct: 54  GNLRAARQVFDKMPH-------GDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSP 106

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           D      V+ AC  +  +  G     + V    L       S L+D+  R G++DK+ ++
Sbjct: 107 DTSVLSVVLKACGQSSNIAYGESLHAYAVKT-SLLSSVYVGSSLLDMYKRVGKIDKSCRV 165

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
            +EM  R     +   W A+++     G+++ G
Sbjct: 166 FSEMPFR-----NAVTWTAIITGLVHAGRYKEG 193


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 143/418 (34%), Positives = 223/418 (53%), Gaps = 20/418 (4%)

Query: 35  NLGTLTNCLKFLN--PRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
            LG +++  K  N  P+N + P++ +I+ FC+NG    A+  F  M    +  + + L S
Sbjct: 294 QLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSS 353

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L      K +  G+Q+   V K G+   ++V +ALID+YAK   +  A  +F E+  KN
Sbjct: 354 ILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKN 413

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPAL--GLDYDHFTLSALLRACAGLSAAEFGRQV 209
            V  N ++ GY    L  GG        AL   +     T S+ L ACA L++ + G QV
Sbjct: 414 EVSWNTVIVGY--ENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQV 471

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H   I+   N    V + +SLI+MY KCG +  A  VFN      E E   DV  W +++
Sbjct: 472 HGLAIKT--NNAKKVAVSNSLIDMYAKCGDIKFAQSVFN------EME-TIDVASWNALI 522

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
             Y  +G  ++ +++ + M     KP+ + F+ V+S CS+ G +  G E FE M+ D+ +
Sbjct: 523 SGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGI 582

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           EP  EHY+C+V LL R+G+LDKA KLI  +        SV +W A+LSA  +    E  +
Sbjct: 583 EPCLEHYTCMVRLLGRSGQLDKAMKLIEGI----PYEPSVMIWRAMLSASMNQNNEEFAR 638

Query: 390 LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            +A++ L+++P +   YV++SN+YA    W  +  +R+ MKE G+KK+ G SWIE  G
Sbjct: 639 RSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQG 696



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 162/355 (45%), Gaps = 22/355 (6%)

Query: 15  CLIIFQSRLML-PYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF-CRNGSPLYALK 72
           CL +F + ++L  Y      K+     N    +  RN + F  +   + C++   LY   
Sbjct: 81  CLDLFATNILLNAYVKAGFDKDA---LNLFDEMPERNNVSFVTLAQGYACQDPIGLY--- 134

Query: 73  TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
             S +H  G  L+ +   S L    S+  A     + + + K G+ S+ FVG+ALI+ Y+
Sbjct: 135 --SRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYS 192

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
               +  A  +F+ I  K+ V    ++S Y E   +   L+L+  M   G   +++T   
Sbjct: 193 VCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDT 252

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
            L+A  GL A +F + VH  +++ C  L  D  +   L+++Y + G ++ A +VFN    
Sbjct: 253 ALKASIGLGAFDFAKGVHGQILKTCYVL--DPRVGVGLLQLYTQLGDMSDAFKVFN---- 306

Query: 253 RLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
               E+ K DVV W+ M+  + +NG+  E + L+  M      P+E    ++++ C+   
Sbjct: 307 ----EMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGK 362

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
              LG E    +V     +      + L+D+  +  ++D A KL  E+  +   S
Sbjct: 363 CSGLG-EQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVS 416



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 126/283 (44%), Gaps = 28/283 (9%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           LD++A  + L       D    K +   + K G    +F  + L++ Y K     DA  +
Sbjct: 47  LDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNL 106

Query: 144 FDEIPVKNSVCANALLSGY-CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           FDE+P +N+V    L  GY C+  +      L   +   G + +    ++ L+    L  
Sbjct: 107 FDEMPERNNVSFVTLAQGYACQDPIG-----LYSRLHREGHELNPHVFTSFLKLFVSLDK 161

Query: 203 AEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
           AE    +H+ +++    LG D   F+ ++LI  Y  CG V  A  VF       EG + K
Sbjct: 162 AEICPWLHSPIVK----LGYDSNAFVGAALINAYSVCGSVDSARTVF-------EGILCK 210

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           D+V+W  ++  Y  NGYF++ +KL   M M G  P+   F T + A      + LG   F
Sbjct: 211 DIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKA-----SIGLGAFDF 265

Query: 321 EWMVHDYKLEP----GPEHYSCLVDLLCRAGELDKAWKLINEM 359
              VH   L+      P     L+ L  + G++  A+K+ NEM
Sbjct: 266 AKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 17/290 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I   + L+  Y  C   + + T       L+ +N + +N VI  +   G    A   F  
Sbjct: 383 IYVSNALIDVYAKC---EKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFRE 439

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
              + + +      S+L A  S+     G QV     K+     V V ++LID+YAK   
Sbjct: 440 ALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGD 499

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I  A+ +F+E+   +    NAL+SGY    L    L ++ +M       +  T   +L  
Sbjct: 500 IKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSG 559

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYGKCGLVTKALQVFNLAGHRL 254
           C+     + G++    MIR   + G +  ++  + ++ + G+ G + KA+++       +
Sbjct: 560 CSNAGLIDQGQECFESMIR---DHGIEPCLEHYTCMVRLLGRSGQLDKAMKL-------I 609

Query: 255 EG-EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
           EG      V++W +ML     N   +E  +     ++     DE  +V V
Sbjct: 610 EGIPYEPSVMIWRAMLSA-SMNQNNEEFARRSAEEILKINPKDEATYVLV 658


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 147/407 (36%), Positives = 210/407 (51%), Gaps = 28/407 (6%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +  VI+ + + G    AL  F  M   G   +   L S L+A  SV     GK+   +
Sbjct: 466 VTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCY 525

Query: 112 VTK--------SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS--VCANALLSG 161
             K              + V + LID+YAK      A  MFD +  K+   V    ++ G
Sbjct: 526 AIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGG 585

Query: 162 YCEAKLWAGGLELVRLMPAL--GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           Y +       L+L   M  +   +  + FTLS  L ACA L+A  FGRQVHAY++R   N
Sbjct: 586 YAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLR---N 642

Query: 220 LGNDV--FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
               V  F+ + LI+MY K G V  A  VF+    R       + V WTS++  YG +G 
Sbjct: 643 FYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQR-------NAVSWTSLMTGYGMHGR 695

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
            ++ +++++ M      PD + F+ V+ ACSH+G V  GI +F  M  D+ ++PGPEHY+
Sbjct: 696 GEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYA 755

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397
           C+VDL  RAG L +A KLINEM        +  +W ALLSAC      ELG+ AA + LE
Sbjct: 756 CMVDLWGRAGRLGEAMKLINEM----PMEPTPVVWVALLSACRLHSNVELGEFAANRLLE 811

Query: 398 LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           L+  N G Y +LSN+YA    W ++ ++R  MK  G+KK  GCSWI+
Sbjct: 812 LESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQ 858



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 176/404 (43%), Gaps = 56/404 (13%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHV-HGIFLDTYALCSSLTASTSVKDARFGKQVQA 110
           + +N V+S +        AL  F  M   H +  D  +L + L A  S+  +  G+QV  
Sbjct: 329 VSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHG 388

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK---- 166
              +SG +  VFVG+A++D+YAK   + +A  +F  +  K+ V  NA+++GY +A     
Sbjct: 389 FSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEH 448

Query: 167 ------------------LWAG-------------GLELVRLMPALGLDYDHFTLSALLR 195
                              W                L++ R M   G   +  TL +LL 
Sbjct: 449 ALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLS 508

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNL------GNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           AC  + A   G++ H Y I+   NL       +D+ + + LI+MY KC     A ++F+ 
Sbjct: 509 ACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDS 568

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM--NGTKPDEVAFVTVISAC 307
              +     ++DVV WT M+G Y ++G     ++L+  M       KP++      + AC
Sbjct: 569 VSPK-----DRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVAC 623

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           +    ++ G +   +++ ++         +CL+D+  ++G++D A  + + M  R   S 
Sbjct: 624 ARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVS- 682

Query: 368 SVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
               W +L++    H  G+  L      + + L P  +   V+L
Sbjct: 683 ----WTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVL 722



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 13/281 (4%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +P +   +N +I      GSP      +  M   G   D Y       A  ++     G 
Sbjct: 220 SPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGA 279

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI---PVKNSVCANALLSGYC 163
            + A V++SG+ S+VFV +A++ +Y K   +  A  MFD++    +++ V  N+++S Y 
Sbjct: 280 SLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYM 339

Query: 164 EAKLWAGGLELVRLMPALGL-DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            A      L L   M    L   D  +L  +L ACA L+A+  GRQVH + IR    L +
Sbjct: 340 WASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRS--GLVD 397

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DVF+ +++++MY KCG + +A +VF     R++    KDVV W +M+  Y + G  +  +
Sbjct: 398 DVFVGNAVVDMYAKCGKMEEANKVF----QRMKF---KDVVSWNAMVTGYSQAGRLEHAL 450

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            L+E M     + D V +  VI+  +  GQ    ++ F  M
Sbjct: 451 SLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 222/396 (56%), Gaps = 12/396 (3%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + +N +   + R G+   AL+  S M   G  LD+ AL   L A + + DA+ GK++ 
Sbjct: 375 NIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIH 434

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           +   +S +     V ++LI +Y++   +  A L+F  +  K+ +  N+++SG C      
Sbjct: 435 SFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSE 494

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
               L+R M   G++ ++ T++++L  CA ++  + G++ H YM R+  +  + + + ++
Sbjct: 495 EASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRRE-DFKDHLLLWNA 553

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L++MY + G V +A +VF++ G R       D + +TSM+  YG  G  +  +KL+E M 
Sbjct: 554 LVDMYARSGKVLEARRVFDMLGER-------DKMTYTSMIAGYGMQGEGQAALKLFEEMN 606

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
               KPD +  + V+SACSH+G V  G   FE M   Y L P  EH++C+ DL  RAG L
Sbjct: 607 NFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLL 666

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
           +KA ++I  M  +     + +MW  L+ AC      E+G+ AA+K LE+ P N G YV++
Sbjct: 667 NKAKEIIRNMPYK----PTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLI 722

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +N+YA    W+++ ++R  M++ G++K  GC+W++V
Sbjct: 723 ANMYAAAGCWNKLAKVRXFMRDLGVRKAPGCAWVDV 758



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 112/457 (24%), Positives = 194/457 (42%), Gaps = 81/457 (17%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           N  +P P+N++IS + RNG    AL  +  M   GI  D +   S L A     D  FGK
Sbjct: 236 NILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGK 295

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           +V   +  S    S+ V +ALI +Y K   +  A  +FD+IP +++V  N+++S Y    
Sbjct: 296 EVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMG 355

Query: 167 LW-----------------------------------AGGLELVRLMPALGLDYDHFTLS 191
           +W                                    G LEL+  M   G   D   L 
Sbjct: 356 MWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALI 415

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
             L AC+ +  A+ G+++H++ IR C   G    +++SLI MY +C  +  A  +F L  
Sbjct: 416 IGLGACSHIGDAKLGKEIHSFAIRSC--FGEVDTVKNSLITMYSRCKDLKHAYLLFQL-- 471

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
             +E    K ++ W S++         +E   L   ML++G +P+ V   +V+  C+   
Sbjct: 472 --MEA---KSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVA 526

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR--------- 362
            ++ G E+  +M      +     ++ LVD+  R+G++ +A ++ + + +R         
Sbjct: 527 NLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMI 586

Query: 363 ------GHGSSSVSMWG---------------ALLSACHDCGKFELGKLAAQKALELDPH 401
                 G G +++ ++                A+LSAC   G    G+L  +K   L   
Sbjct: 587 AGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSL--- 643

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
               Y +  +L    CM D  G+   L K K + +++
Sbjct: 644 ----YGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNM 676



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 163/386 (42%), Gaps = 42/386 (10%)

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIF----LDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           + +F   G+ L A KT S + +H       L  + + S L++ T VK    G+Q+  H+ 
Sbjct: 142 LKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHGHII 201

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
             G+     +   L+  Y+   L+ DA ++ +   + +    N L+S Y         L 
Sbjct: 202 SLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALS 261

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
             + M   G+  D+FT  ++L+AC       FG++VH  +      +   + + ++LI M
Sbjct: 262 AYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESI--NASRIKWSLIVHNALISM 319

Query: 234 YGKCGLVTKALQVFN----------------------------LAGHRLEGEINKDVVLW 265
           YGKCG V  A  +F+                            L G     +I  ++++W
Sbjct: 320 YGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIW 379

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            ++ G Y R G +K  ++L   M   G+  D VA +  + ACSH G  KLG E   + + 
Sbjct: 380 NTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIR 439

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
               E      S L+ +  R  +L  A+ L   M      + S+  W +++S C    + 
Sbjct: 440 SCFGEVDTVKNS-LITMYSRCKDLKHAYLLFQLM-----EAKSLISWNSIISGCCHMDRS 493

Query: 386 ELGKLAAQKAL--ELDPHNVGIYVML 409
           E      ++ L   ++P+ V I  +L
Sbjct: 494 EEASFLLREMLLSGIEPNYVTIASVL 519


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/434 (31%), Positives = 229/434 (52%), Gaps = 46/434 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I  +     P  AL  F  M   GI  D +   +  +  + + +   GKQ+
Sbjct: 175 RDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQI 234

Query: 109 QAHVTKS--GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA----------- 155
            A V K+     S++ + SA++D+YAK  LI+ AE +F  +    S  A           
Sbjct: 235 HAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARC 294

Query: 156 ---------------------NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
                                 A++SGY +A   +  LEL + M ALG+  D  TL A+L
Sbjct: 295 GEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVL 354

Query: 195 RACAGLSAAEFGRQV-HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
            ACA L A + G+++ H Y+     N   +  + +++++MY KCG +  AL++F   G  
Sbjct: 355 SACARLGAFDLGKRLYHQYIENGVFN--QNTILTAAVMDMYAKCGSIDSALEIFRRVGKN 412

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
           +     K   ++ SM+    ++G  +  I ++  ++  G KPDEV FV V+ AC H+G +
Sbjct: 413 M-----KTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLI 467

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G + FE M + Y ++P  EHY C+VDLL R G L++A+ L+ +M      ++SV +W 
Sbjct: 468 EEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKM---PFEANSV-IWR 523

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALLSAC   G  ++G++A QK LE++  +   YV+LSN+ A    W+E  Q+R++M++ G
Sbjct: 524 ALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHG 583

Query: 434 LKKDVGCSWIEVTG 447
           ++K  G S+IE+ G
Sbjct: 584 IRKPPGWSYIELGG 597



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 178/385 (46%), Gaps = 28/385 (7%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA     GL      I  SRL+  ++    K  L         ++  N   +N +I  
Sbjct: 27  QIHAQTIVNGLHHQIFSI--SRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84

Query: 61  FCRNGSPLYALKTFSFMHVHGIFL-DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS 119
           + R+ +P  A+  +  M   GI   + +     L +   +     G +V +H+ K G+ S
Sbjct: 85  YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFES 144

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
            +FV +ALI LY+    ++ A  +FDE  V++ V  N ++ GY E       L L   M 
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ 204

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
             G+  D FT  AL   C+ L+    G+Q+HA + +   ++ +++ ++S++++MY KCGL
Sbjct: 205 NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGL 264

Query: 240 VTKALQVFN--------------LAGHRLEGEIN-----------KDVVLWTSMLGVYGR 274
           +  A +VF+              + G+   GEIN           +DV+ WT+M+  Y +
Sbjct: 265 INIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQ 324

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
            G   E ++L++ M   G KPDEV  V V+SAC+  G   LG   +   + +        
Sbjct: 325 AGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI 384

Query: 335 HYSCLVDLLCRAGELDKAWKLINEM 359
             + ++D+  + G +D A ++   +
Sbjct: 385 LTAAVMDMYAKCGSIDSALEIFRRV 409


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 214/396 (54%), Gaps = 16/396 (4%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +NVVI+ +  NG    +   F  +         +   + L+ +TS  + R G+Q+   
Sbjct: 308 ISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQ 367

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
               G      V +AL+D+YAK     +A+ +FD I  K++V   A++S Y +      G
Sbjct: 368 AITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEG 427

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           + +   M   G+  D  T +++LRACA L++   GRQ+H+ +IR      ++V+  S+L+
Sbjct: 428 INVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIR--SGFMSNVYSGSALL 485

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           + Y KCG +T A++ F        GE+  ++ V W +++  Y +NG     +  ++ M+ 
Sbjct: 486 DTYAKCGCMTDAIKSF--------GEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           +G KPD V+F++V+SACSH G V+  + +F  M   Y++ P  EHY+ +VD+LCR G  D
Sbjct: 538 SGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFD 597

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL-DPHNVGIYVML 409
           +A KL+ EM        S  MW ++L++C      EL K AA +   + D  +   Y+ +
Sbjct: 598 EAEKLMTEM----PFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINM 653

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           SN+YA    WD + ++++ M+++G++K    SW+E+
Sbjct: 654 SNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEI 689



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 170/365 (46%), Gaps = 19/365 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + FN +++ +   G    A++ F  +H  GI    +   + L+A+  + D +FG+QV
Sbjct: 204 KDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQV 263

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K+ ++ +VFVG+AL+D Y+K   + +   +F E+P  + +  N +++ Y     +
Sbjct: 264 HGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQF 323

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
               +L R +     D   F  + LL           GRQ+H   I    N  + V  ++
Sbjct: 324 KESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRV--EN 381

Query: 229 SLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +L++MY KC    +A ++F N+A         K  V WT+M+  Y + G  +E I ++  
Sbjct: 382 ALVDMYAKCNGDKEAQKIFDNIAC--------KSTVPWTAMISAYVQKGKHEEGINVFSD 433

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G   D+  F +++ AC++   + LG +    ++            S L+D   + G
Sbjct: 434 MRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCG 492

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVGI 405
            +  A K   EM +R    +SVS W AL+SA    G  +    + Q+ ++    P +V  
Sbjct: 493 CMTDAIKSFGEMPER----NSVS-WNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSF 547

Query: 406 YVMLS 410
             +LS
Sbjct: 548 LSVLS 552



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 157/397 (39%), Gaps = 66/397 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ +P+  +IS + + G     +  FS M   G+  D     S L A  ++     G+Q+
Sbjct: 406 KSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQL 465

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + + +SG++S+V+ GSAL+D YAK   + DA   F E+P +NSV  NAL+S Y +    
Sbjct: 466 HSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNV 525

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G L   + M   G   D  +  ++L AC+                              
Sbjct: 526 DGTLNSFQQMIQSGYKPDSVSFLSVLSACS------------------------------ 555

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
                   CG V +AL  FN      E    ++   +TSM+ V  RNG F E  KL   M
Sbjct: 556 -------HCGFVEEALWHFNSMTQIYEVTPKRE--HYTSMVDVLCRNGRFDEAEKLMTEM 606

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                +P E+ + +V+++C      +L  +  + + +   L      Y  + ++   AG+
Sbjct: 607 PF---EPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAP-YINMSNIYAVAGQ 662

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            D   K+   M DRG        W  +    H     +      +K L            
Sbjct: 663 WDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILR----------- 711

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
                       +I  L + M++KG K D  C+  +V
Sbjct: 712 ------------KINALSKEMEKKGYKPDTTCALHDV 736



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 160/344 (46%), Gaps = 23/344 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R  + + ++I  + ++     A + ++ M   GI  D   L + L+    ++      Q+
Sbjct: 103 RTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQI 162

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             HV K G+  ++ V ++L+D Y K   ++ A  +F  +  K++V  N+L++GY    L 
Sbjct: 163 HTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLN 222

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +EL   +   G+    FT +ALL A  GL   +FG+QVH ++++   N   +VF+ +
Sbjct: 223 EEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLK--TNFVWNVFVGN 280

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++ Y K   V +  ++F      L+G I+ +VV+ +     Y  NG FKE   L+  +
Sbjct: 281 ALLDYYSKHDQVDEVGKLF-XEMPELDG-ISYNVVITS-----YAWNGQFKESFDLFRKL 333

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLLC 344
                   +  F T++S  + +  +++G +     +H   +  G    S     LVD+  
Sbjct: 334 QFTRFDRRQFPFATLLSIATSSLNLRMGRQ-----IHCQAITVGANFESRVENALVDMYA 388

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           +     +A K+ + +        S   W A++SA    GK E G
Sbjct: 389 KCNGDKEAQKIFDNI-----ACKSTVPWTAMISAYVQKGKHEEG 427



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 53/289 (18%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE--- 164
           + AH+ K+G+  +    +  ++ + +   +  A  +FD++P KN++  N ++SG+ +   
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 165 ---------------AKLWA---GGL-------ELVRL---MPALGLDYDHFTLSALLRA 196
                          A  W    GG        E  RL   M   G++ D+ TL  LL  
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYGKCGLVTKALQVFNLAGHRL 254
              L       Q+H ++I+    LG +  +   +SL++ Y K   +  A Q+F    H L
Sbjct: 150 FGELETKNVIVQIHTHVIK----LGYEYNLMVCNSLVDAYCKTHCLYLASQLFK---HML 202

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
               NKD V + S++  Y   G  +E I+L+  +  +G KP +  F  ++SA       K
Sbjct: 203 ----NKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTK 258

Query: 315 LGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEM 359
            G +     VH + L+          + L+D   +  ++D+  KL  EM
Sbjct: 259 FGQQ-----VHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEM 302



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 41/213 (19%)

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           E G  VHA+ +       N + + + +I  + K G ++KA ++F       +G + +  V
Sbjct: 55  ERGDLVHAHQVFDQMPAKNTISL-NMMISGHLKFGKLSKARELF-------DGMVERTAV 106

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQ 312
            WT ++G Y ++   KE  +LY  M   G +PD V  VT++S              HT  
Sbjct: 107 SWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHV 166

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           +KLG EY   MV            + LVD  C+   L  A +L   ML++         +
Sbjct: 167 IKLGYEY-NLMV-----------CNSLVDAYCKTHCLYLASQLFKHMLNK-----DTVTF 209

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
            +L++   + G   L + A +  LEL  HN GI
Sbjct: 210 NSLMTGYSNEG---LNEEAIELFLEL--HNSGI 237


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 238/448 (53%), Gaps = 24/448 (5%)

Query: 1   NVHAHQFETGLLL---ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVV 57
            +H H  +TG  L   +C ++    +   Y        L      L+ L   + + +  +
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLID--MYAKYG------QLALALRILRRLPEDDVVSWTAM 535

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+ + ++     AL+ F  M   GI  D     S+++A   ++  R G+Q+ A    +G+
Sbjct: 536 IAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGF 595

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            + + + +ALI LYA+   I +A L F++I  KN++  N+L+SG  ++  +   L++   
Sbjct: 596 GADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVR 655

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M     + + FT  + + A A L+  + G+Q+H+ +++   +   +V   +SLI +Y K 
Sbjct: 656 MLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREV--SNSLISLYAKS 713

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G ++ A + FN    R       +V+ W +M+  Y ++G   E ++L+E M + G  P+ 
Sbjct: 714 GSISDAWREFNDMSER-------NVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNH 766

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           V FV V+SACSH G VK G++YFE M   + L P  EHY C+VDLL RAG+LD+A + I 
Sbjct: 767 VTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIK 826

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
           EM       +   +W  LLSAC      E+G+ AA   LEL+P +   YV++SN+YA   
Sbjct: 827 EMPI----PADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSR 882

Query: 418 MWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            W      R+LMK++G+KK+ G SWIEV
Sbjct: 883 QWIHRDWSRKLMKDRGVKKEPGRSWIEV 910



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 181/391 (46%), Gaps = 31/391 (7%)

Query: 7   FETGLLLICLII---FQSR------LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVV 57
           FE G  L CL+I   F S       L+  Y+  R    L +       +N R+ + +N +
Sbjct: 277 FELGEQLHCLVIKWGFHSETYVCNGLVALYSRSR---KLISAERIFSTMNSRDGVSYNSL 333

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           IS   + G    AL+ F+ M    +  D   + S L+A  SV     G Q+ +H  K+G 
Sbjct: 334 ISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGM 393

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            + + +  +L+DLY+K   +  A   F     +N V  N +L  Y +    +   E+ R 
Sbjct: 394 SADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQ 453

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  + FT  ++LR C  L A   G Q+H ++I+    L  +V++ S LI+MY K 
Sbjct: 454 MQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQL--NVYVCSVLIDMYAKY 511

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G +  AL++      RL  +   DVV WT+M+  Y ++  F E ++L+E M   G + D 
Sbjct: 512 GQLALALRIL----RRLPED---DVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDN 564

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKL 355
           + F + ISAC+    ++ G +        Y    G +    + L+ L  R G + +A+  
Sbjct: 565 IGFASAISACAGIRALRQGQQIH---AQSYAAGFGADLSINNALISLYARCGRIQEAYLA 621

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
             ++ D+ + S     W +L+S     G FE
Sbjct: 622 FEKIGDKNNIS-----WNSLVSGLAQSGYFE 647



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 162/326 (49%), Gaps = 23/326 (7%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS   +NG    A+  F  MH   IF   Y L S L+AST ++    G+Q+   V K G
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           + S  +V + L+ LY++   +  AE +F  +  ++ V  N+L+SG  +       LEL  
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFT 351

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M    L  D  T+++LL ACA + A   G Q+H++ I+    +  D+ ++ SL+++Y K
Sbjct: 352 KMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK--AGMSADIILEGSLLDLYSK 409

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           C  V  A + F      L  E  +++VLW  ML  YG+     +  +++  M M G  P+
Sbjct: 410 CADVETAHKFF------LTTE-TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPN 462

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE--HYSC--LVDLLCRAGELDKA 352
           +  + +++  C+  G + LG +     +H + ++ G +   Y C  L+D+  + G+L  A
Sbjct: 463 QFTYPSILRTCTSLGALYLGEQ-----IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALA 517

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSA 378
            +++  + +       V  W A+++ 
Sbjct: 518 LRILRRLPE-----DDVVSWTAMIAG 538



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 138/312 (44%), Gaps = 19/312 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA-RFGKQ 107
           R+   +N +I  F    S       F  M   GI  + Y     L A      A  + KQ
Sbjct: 122 RSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQ 181

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V +     G+ SS  V + LIDLY+K   I  A+ +F+ I +K+ V   A++SG  +  L
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               + L   M A  +    + LS++L A   +   E G Q+H  +I+      ++ ++ 
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK--WGFHSETYVC 299

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           + L+ +Y +   +  A ++F+    R       D V + S++    + G+    ++L+  
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSR-------DGVSYNSLISGLVQQGFSDRALELFTK 352

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLL 343
           M  +  KPD +   +++SAC+  G +  G++     +H + ++ G          L+DL 
Sbjct: 353 MQRDCLKPDCITVASLLSACASVGALHKGMQ-----LHSHAIKAGMSADIILEGSLLDLY 407

Query: 344 CRAGELDKAWKL 355
            +  +++ A K 
Sbjct: 408 SKCADVETAHKF 419



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 23/263 (8%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++   ++KSG+     +  +L+D Y +    H A  +FDE   ++    N ++  +   K
Sbjct: 79  RLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQK 138

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVF 225
                  L R M A G+  + +T + +L+AC G   A  + +QVH+          +   
Sbjct: 139 SNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYY--GFDSSPL 196

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + + LI++Y K G +  A +VFN           KD+V W +M+    +NG  +E I L+
Sbjct: 197 VANLLIDLYSKNGYIESAKKVFNCI-------CMKDIVTWVAMISGLSQNGLEEEAILLF 249

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE----YFEWMVHDYKLEPGPEHYSC--L 339
             M  +   P      +V+SA +     +LG +      +W  H        E Y C  L
Sbjct: 250 CDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH-------SETYVCNGL 302

Query: 340 VDLLCRAGELDKAWKLINEMLDR 362
           V L  R+ +L  A ++ + M  R
Sbjct: 303 VALYSRSRKLISAERIFSTMNSR 325


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 147/477 (30%), Positives = 236/477 (49%), Gaps = 49/477 (10%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H H  + G      +   + L+  Y  C     LG        +  R+ + +N +I  +
Sbjct: 138 IHVHALKLGFE--SYLFVSNALIHMYAMC---GQLGFAQKMFDGMLDRDLVSWNTLICGY 192

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +       L+ F  M    I  D   +   + A + + D  F   +  ++ ++     V
Sbjct: 193 SQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDV 252

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL----------------------- 158
           ++G+ LID+Y +  L   A+ +FD +  +N V  NAL                       
Sbjct: 253 YLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKR 312

Query: 159 --------LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
                   ++GY +A  ++  ++L + M A  +  D  T++++L ACA L   + G  VH
Sbjct: 313 DVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVH 372

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            Y+ R    +  D+++ +SLI+MY KCG+V KAL+VF    HR++   +KD V WTS++ 
Sbjct: 373 HYIRRH--GVQADIYVGNSLIDMYCKCGMVEKALEVF----HRMK---DKDSVSWTSVIS 423

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
               NG+    + L+  ML  G +P    FV ++ AC+H G V  G+EYFE M   + L 
Sbjct: 424 GLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLV 483

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
           P  +HY C+VDLL R+G +DKA++ I +M         V +W  LLSAC   G   L ++
Sbjct: 484 PAMKHYGCVVDLLSRSGNIDKAYEFIKKMPI----VPDVVVWRILLSACKLHGNVVLAEI 539

Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A ++ LELDP + G YV+LSN YA    WD+  ++RELM++  ++K  G S IEV G
Sbjct: 540 ATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDG 596



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 172/352 (48%), Gaps = 40/352 (11%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I    ++  P+ A+  ++ MH  GI  +   L     A   V D   G+++  H  
Sbjct: 84  WNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHAL 143

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G+ S +FV +ALI +YA    +  A+ MFD +  ++ V  N L+ GY +   +   L 
Sbjct: 144 KLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLR 203

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M A  +  D  T+  ++ AC+ L   EF   +  Y+  K  NL  DV++ ++LI+M
Sbjct: 204 LFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYI--KENNLEIDVYLGNTLIDM 261

Query: 234 YGKCGLVTKALQVFN-------------LAGHRLEGEIN-----------KDVVLWTSML 269
           YG+  L   A  VF+             + GH   G +            +DV+ WTSM+
Sbjct: 262 YGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMI 321

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
             Y +   F + +KL++ M+    KPD+V   +V+SAC+H G++ +G     W VH Y  
Sbjct: 322 TGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVG-----WAVHHYIR 376

Query: 330 EPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             G +      + L+D+ C+ G ++KA ++ + M D+     SVS W +++S
Sbjct: 377 RHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDK----DSVS-WTSVIS 423



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 160/335 (47%), Gaps = 23/335 (6%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYA-KLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           K++ AH+ ++   +  F+ S +I  Y+     +H A L+F++I     V  N ++ G  +
Sbjct: 34  KELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQ 93

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           +      + +   M   G+  ++ TL  L +ACA +S    GR++H + ++      + +
Sbjct: 94  SDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALK--LGFESYL 151

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ ++LI MY  CG +  A ++F       +G +++D+V W +++  Y +   +KEV++L
Sbjct: 152 FVSNALIHMYAMCGQLGFAQKMF-------DGMLDRDLVSWNTLICGYSQYNKYKEVLRL 204

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           ++AM     K D V  V +I ACSH G  +      ++ + +  LE      + L+D+  
Sbjct: 205 FDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKY-IKENNLEIDVYLGNTLIDMYG 263

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL--ELDPHN 402
           R    + A  + + M +R     ++  W AL+      G  ++G L A + L   +   +
Sbjct: 264 RRSLAELAQGVFDRMRER-----NIVSWNALV-----MGHAKVGNLTAARKLFDNMPKRD 313

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           V  +  +   Y++   + +  +L + M    +K D
Sbjct: 314 VISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPD 348


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 142/442 (32%), Positives = 231/442 (52%), Gaps = 26/442 (5%)

Query: 19  FQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYAL---K 72
           F+S L +           G L+N     +    RN + +  +I+ + +N     AL   K
Sbjct: 113 FESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFK 172

Query: 73  TFSFMHVHG------IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSA 126
            F F    G        +D+ A+ S L+A + V +    + V     K G    + V + 
Sbjct: 173 EFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENT 232

Query: 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-LMPALGLDY 185
           L+D YAK   +  +  +FD++  K+ V  N++++ Y +  L     E+   ++ A G  Y
Sbjct: 233 LLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKY 292

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           +  TLS LL ACA   A   G  +H  +I+      N+V M +S+I+MY KCG    A  
Sbjct: 293 NEVTLSTLLLACAHEGALRVGMCLHDQVIK--MGYVNNVIMATSIIDMYCKCGQAEMARN 350

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
            F       +G   K+V  WT+M+  YG +G+ +E + ++  M+  G KP+ + F++V++
Sbjct: 351 AF-------DGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLA 403

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
           ACSH G ++ G  +F  M H+Y +EPG EHY C+VDLL RAG + +A+ LI  M  R   
Sbjct: 404 ACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVR--- 460

Query: 366 SSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQL 425
                +WG+LL+AC      EL +++A++  +LDP N G YV+L+N+YA    W ++ ++
Sbjct: 461 -RDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERM 519

Query: 426 RELMKEKGLKKDVGCSWIEVTG 447
           R L+K++GL K  G S +E+ G
Sbjct: 520 RILVKDRGLVKPPGYSLVELKG 541



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 178/366 (48%), Gaps = 39/366 (10%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY 87
           T      NL TL N  K+ +  +   +N +I++  R G    +L+ FS+M    I  +  
Sbjct: 26  TAAATNTNLTTLFN--KYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRS 83

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
               ++ + +++ D   GKQ        G+ S +FV SALID+Y+K   + +A ++FDEI
Sbjct: 84  TFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEI 143

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLM---------PALGLDYDHFTLSALLRACA 198
           P +N V   +L++GY +       L + +             +G   D   + ++L AC+
Sbjct: 144 PRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACS 203

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFM--QSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            +S       VH   I+    +G D  M  +++L++ Y KCG V+ + +VF+        
Sbjct: 204 RVSNKAVSEGVHGVAIK----VGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAE---- 255

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKL 315
              KDVV W SM+ VY +NG   +  +++  ML   G K +EV   T++ AC+H G +++
Sbjct: 256 ---KDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRV 312

Query: 316 GIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
           G+      +HD  ++ G  +     + ++D+ C+ G+ + A    + M ++     +V  
Sbjct: 313 GM-----CLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEK-----NVRS 362

Query: 372 WGALLS 377
           W A+++
Sbjct: 363 WTAMIA 368


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 229/431 (53%), Gaps = 28/431 (6%)

Query: 20  QSRLMLPYTTCRHKKNLGTLTNCLKFLN----PRNPLPFNVVISDFCRNGSPLYALKTFS 75
           ++ LM+ Y+ C       ++    K  +      N + +  +I  F +N +   A+  F 
Sbjct: 344 RTALMVTYSKC------SSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFC 397

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            M   G+  + +   + L      K +    Q+ A + K+ +     V +AL+D Y K  
Sbjct: 398 QMSREGVRPNHFTYSTVLAG----KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTG 453

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
            + ++  +F  IP K+ V  +A+L+G  + +     +E+   +   G+  + +T S+++ 
Sbjct: 454 NVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVIN 513

Query: 196 ACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
           AC+  +A  E G+Q+HA  ++      N + + S+L+ MY K G +  A +VF     R 
Sbjct: 514 ACSSSAATVEHGKQIHATAVKS--GKSNALCVSSALLTMYSKKGNIESAEKVFTRQEER- 570

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                 D+V W SM+  YG++G  K+ +++++ M   G   D+V F+ V++AC+H G V+
Sbjct: 571 ------DIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVE 624

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G +YF  M+ DY ++   EHYSC+VDL  RAG  DKA  +IN M       +S ++W  
Sbjct: 625 EGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGM----PFPASPTIWRT 680

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL+AC      ELGKLAA+K + L P++   YV+LSN++A    W+E   +R+LM E+ +
Sbjct: 681 LLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKV 740

Query: 435 KKDVGCSWIEV 445
           KK+ GCSWIE+
Sbjct: 741 KKEAGCSWIEI 751



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 154/334 (46%), Gaps = 36/334 (10%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++ DF RN     AL  F  +H  G+ +D   L  +L     + D   G+QV     
Sbjct: 72  YNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSL 131

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           KSG+L  V VG++L+D+Y K     D   +FDE+ +KN V   +LLSGY    L    + 
Sbjct: 132 KSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIH 191

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L+  M   G++ + FT + +L A A  S  E G QVHA +++         F+ ++LI M
Sbjct: 192 LINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEF--TTFVCNALICM 249

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K  +V  A  VF       +  + +D V W  M+G Y   G++ E  +++  M + G 
Sbjct: 250 YLKSEMVGDAEAVF-------DSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 294 KPDEVAFVTVISACS-----------HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           K     F T +  CS           H G VK G E+      D +        + L+  
Sbjct: 303 KLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEF----AQDIR--------TALMVT 350

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             +   +D+A+KL + M D  H   +V  W A++
Sbjct: 351 YSKCSSVDEAFKLFS-MADAAH---NVVTWTAMI 380



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 151/330 (45%), Gaps = 18/330 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +  ++S + RNG     +   + M + G+  + +   + L A         G QV
Sbjct: 168 KNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQV 227

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + K+G+  + FV +ALI +Y K  ++ DAE +FD + V++SV  N ++ GY     +
Sbjct: 228 HAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFY 287

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             G ++   M   G+          L+ C+      F +Q+H  +++       D+  ++
Sbjct: 288 LEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDI--RT 345

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+  Y KC  V +A ++F++A      +   +VV WT+M+G + +N   K+ + L+  M
Sbjct: 346 ALMVTYSKCSSVDEAFKLFSMA------DAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQM 399

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G +P+   + TV++     G+    +      +     E  P   + L+D   + G 
Sbjct: 400 SREGVRPNHFTYSTVLA-----GKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGN 454

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + ++ ++   +      +  +  W A+L+ 
Sbjct: 455 VVESARVFYSI-----PAKDIVAWSAMLTG 479



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FDE P+K+    N LL  +         L L + + + GL  D  TLS  L+ C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L     GRQVH   ++       DV + +SL++MY K         +F+  G        
Sbjct: 117 LFDQVVGRQVHCQSLK--SGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMG-------I 167

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           K+VV WTS+L  Y RNG   EVI L   M M G  P+   F TV+ A +    ++ G++ 
Sbjct: 168 KNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQV 227

Query: 320 FEWMVHD 326
              +V +
Sbjct: 228 HAMIVKN 234


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 214/396 (54%), Gaps = 16/396 (4%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +NVVI+ +  NG    +   F  +         +   + L+ +TS  + R G+Q+   
Sbjct: 308 ISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQ 367

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
               G      V +AL+D+YAK     +A+ +FD I  K++V   A++S Y +      G
Sbjct: 368 AITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEG 427

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           + +   M   G+  D  T +++LRACA L++   GRQ+H+ +IR      ++V+  S+L+
Sbjct: 428 INVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIR--SGFMSNVYSGSALL 485

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           + Y KCG +T A++ F        GE+  ++ V W +++  Y +NG     +  ++ M+ 
Sbjct: 486 DTYAKCGCMTDAIKSF--------GEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           +G KPD V+F++V+SACSH G V+  + +F  M   Y++ P  EHY+ +VD+LCR G  D
Sbjct: 538 SGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFD 597

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL-DPHNVGIYVML 409
           +A KL+ EM        S  MW ++L++C      EL K AA +   + D  +   Y+ +
Sbjct: 598 EAEKLMTEM----PFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINM 653

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           SN+YA    WD + ++++ M+++G++K    SW+E+
Sbjct: 654 SNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEI 689



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 170/365 (46%), Gaps = 19/365 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + FN +++ +   G    A++ F  +H  GI    +   + L+A+  + D +FG+QV
Sbjct: 204 KDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQV 263

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K+ ++ +VFVG+AL+D Y+K   + +   +F E+P  + +  N +++ Y     +
Sbjct: 264 HGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQF 323

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
               +L R +     D   F  + LL           GRQ+H   I    N  + V  ++
Sbjct: 324 KESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRV--EN 381

Query: 229 SLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +L++MY KC    +A ++F N+A         K  V WT+M+  Y + G  +E I ++  
Sbjct: 382 ALVDMYAKCNGDKEAQKIFDNIAC--------KSTVPWTAMISAYVQKGKHEEGINVFSD 433

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G   D+  F +++ AC++   + LG +    ++            S L+D   + G
Sbjct: 434 MRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCG 492

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVGI 405
            +  A K   EM +R    +SVS W AL+SA    G  +    + Q+ ++    P +V  
Sbjct: 493 CMTDAIKSFGEMPER----NSVS-WNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSF 547

Query: 406 YVMLS 410
             +LS
Sbjct: 548 LSVLS 552



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 157/397 (39%), Gaps = 66/397 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ +P+  +IS + + G     +  FS M   G+  D     S L A  ++     G+Q+
Sbjct: 406 KSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQL 465

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + + +SG++S+V+ GSAL+D YAK   + DA   F E+P +NSV  NAL+S Y +    
Sbjct: 466 HSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNV 525

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
            G L   + M   G   D  +  ++L AC+                              
Sbjct: 526 DGTLNSFQQMIQSGYKPDSVSFLSVLSACS------------------------------ 555

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
                   CG V +AL  FN      E    ++   +TSM+ V  RNG F E  KL   M
Sbjct: 556 -------HCGFVEEALWHFNSMTQIYEVTPKRE--HYTSMVDVLCRNGRFDEAEKLMTEM 606

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                +P E+ + +V+++C      +L  +  + + +   L      Y  + ++   AG+
Sbjct: 607 PF---EPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAP-YINMSNIYAVAGQ 662

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            D   K+   M DRG        W  +    H     +      +K L            
Sbjct: 663 WDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILR----------- 711

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
                       +I  L + M++KG K D  C+  +V
Sbjct: 712 ------------KINALSKEMEKKGYKPDTTCALHDV 736



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 160/344 (46%), Gaps = 23/344 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R  + + ++I  + ++     A + ++ M   GI  D   L + L+    ++      Q+
Sbjct: 103 RTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQI 162

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             HV K G+  ++ V ++L+D Y K   ++ A  +F  +  K++V  N+L++GY    L 
Sbjct: 163 HTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLN 222

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +EL   +   G+    FT +ALL A  GL   +FG+QVH ++++   N   +VF+ +
Sbjct: 223 EEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLK--TNFVWNVFVGN 280

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++ Y K   V +  ++F      L+G I+ +VV+ +     Y  NG FKE   L+  +
Sbjct: 281 ALLDYYSKHDQVDEVGKLF-YEMPELDG-ISYNVVITS-----YAWNGQFKESFDLFRKL 333

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLLC 344
                   +  F T++S  + +  +++G +     +H   +  G    S     LVD+  
Sbjct: 334 QFTRFDRRQFPFATLLSIATSSLNLRMGRQ-----IHCQAITVGANFESRVENALVDMYA 388

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           +     +A K+ + +        S   W A++SA    GK E G
Sbjct: 389 KCNGDKEAQKIFDNI-----ACKSTVPWTAMISAYVQKGKHEEG 427



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 53/289 (18%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE--- 164
           + AH+ K+G+  +    +  ++ + +   +  A  +FD++P KN++  N ++SG+ +   
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 165 ---------------AKLWA---GGL-------ELVRL---MPALGLDYDHFTLSALLRA 196
                          A  W    GG        E  RL   M   G++ D+ TL  LL  
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYGKCGLVTKALQVFNLAGHRL 254
              L       Q+H ++I+    LG +  +   +SL++ Y K   +  A Q+F    H L
Sbjct: 150 FGELETKNVIVQIHTHVIK----LGYEYNLMVCNSLVDAYCKTHCLYLASQLFK---HML 202

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
               NKD V + S++  Y   G  +E I+L+  +  +G KP +  F  ++SA       K
Sbjct: 203 ----NKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTK 258

Query: 315 LGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEM 359
            G +     VH + L+          + L+D   +  ++D+  KL  EM
Sbjct: 259 FGQQ-----VHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEM 302



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 41/213 (19%)

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           E G  VHA+ +       N + + + +I  + K G ++KA ++F       +G + +  V
Sbjct: 55  ERGDLVHAHQVFDQMPAKNTISL-NMMISGHLKFGKLSKARELF-------DGMVERTAV 106

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQ 312
            WT ++G Y ++   KE  +LY  M   G +PD V  VT++S              HT  
Sbjct: 107 SWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHV 166

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           +KLG EY   MV            + LVD  C+   L  A +L   ML++         +
Sbjct: 167 IKLGYEY-NLMV-----------CNSLVDAYCKTHCLYLASQLFKHMLNK-----DTVTF 209

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
            +L++   + G   L + A +  LEL  HN GI
Sbjct: 210 NSLMTGYSNEG---LNEEAIELFLEL--HNSGI 237


>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 558

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 133/414 (32%), Positives = 218/414 (52%), Gaps = 17/414 (4%)

Query: 35  NLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
             GT+ +  K  +    RN + + V++  + +        + F  M   G+ LD   L  
Sbjct: 156 QFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLIC 215

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
            + A  +V   + GK V     +  ++  S ++ +++ID+Y K  L+ +A  +F+    +
Sbjct: 216 LVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLEASIIDMYVKCRLLDNARKLFETSVER 275

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N V    L+SG+ + +     ++L R M    +  +H TL+A+L +C+ L +   G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAAILVSCSSLGSLRHGKSVH 335

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            YMIR    +  D    +S I+ Y +CG +  A +VF++   R       +V+ W+SM+ 
Sbjct: 336 GYMIRNGIEM--DAVNFTSFIDTYARCGNIQMARKVFDMMPKR-------NVISWSSMIN 386

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            +G NG F+E +  ++ M      P+ V FV+++SACSH+G VK G + FE M  DY L 
Sbjct: 387 AFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGLV 446

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
           P  EHY+C+VDLL RAGE+ +A   I+ M  +   S+    WGALLSAC    + +L   
Sbjct: 447 PEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASA----WGALLSACRIHKEVDLAGE 502

Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            A+K L ++P    +YV+LSN+YA   MW+ +  +R  M  KG +K +G S  E
Sbjct: 503 IAEKLLSMEPDESSVYVLLSNIYADAGMWEMVNCVRHKMGIKGYRKPMGLSATE 556



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 178/366 (48%), Gaps = 18/366 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYA--LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           RN   +N ++S + ++ S  Y+  L  ++ M  H   +D++ L  ++ A   +     G 
Sbjct: 70  RNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGM 129

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            +     K+G     +V  +L+++YA+   +  A+ +FDE+PV+NSV    L+ GY +  
Sbjct: 130 LIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYS 189

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
             +    L  LM   GL  D  TL  L++AC  +SA + G+ VH   IR+   +    ++
Sbjct: 190 KDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSF-IDQSGYL 248

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           ++S+I+MY KC L+  A ++F       E  + ++VV+WT+++  + +     E I L+ 
Sbjct: 249 EASIIDMYVKCRLLDNARKLF-------ETSVERNVVMWTTLISGFAKCERAVEAIDLFR 301

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            ML     P+      ++ +CS  G ++ G     +M+ +  +E    +++  +D   R 
Sbjct: 302 QMLGESILPNHCTLAAILVSCSSLGSLRHGKSVHGYMIRN-GIEMDAVNFTSFIDTYARC 360

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVG 404
           G +  A K+ + M  R     +V  W ++++A    G FE  L      K+  L P++V 
Sbjct: 361 GNIQMARKVFDMMPKR-----NVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVT 415

Query: 405 IYVMLS 410
              +LS
Sbjct: 416 FVSLLS 421



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 127/296 (42%), Gaps = 18/296 (6%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--K 150
           L+  +  K     +QV A V   G+   V +GS+L + Y +   +  A   FD IP   +
Sbjct: 11  LSILSQTKTLHHTQQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCWKR 70

Query: 151 NSVCANALLSGYCEAK--LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
           N    N +LSGY ++K   ++  L L   M       D F L   ++AC GL   E G  
Sbjct: 71  NRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGML 130

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +H   ++    L  D ++  SL+EMY + G +  A +VF+    R       + VLW  +
Sbjct: 131 IHGLAMKN--GLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVR-------NSVLWGVL 181

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y +     EV +L+  M   G   D +  + ++ AC +    K G       +    
Sbjct: 182 MKGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSF 241

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           ++      + ++D+  +   LD A KL    ++R     +V MW  L+S    C +
Sbjct: 242 IDQSGYLEASIIDMYVKCRLLDNARKLFETSVER-----NVVMWTTLISGFAKCER 292


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 128/412 (31%), Positives = 219/412 (53%), Gaps = 14/412 (3%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           ++GT       +  R+   +N +IS + +N     A   F  M   G+F D   L   L+
Sbjct: 211 DMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLS 270

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           A   +K  + GK +  +  ++   + + F  ++LI++Y     + DA  +F+ +  K++V
Sbjct: 271 ACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTV 330

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N+++ GY         L L R M   G   D  T  A+L AC  ++A  +G  +H+Y+
Sbjct: 331 SWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYL 390

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           ++K      +  + ++L++MY KCG +  + +VF+          +K +V W++M+  YG
Sbjct: 391 VKK--GFDANTIVGTALVDMYSKCGSLACSRRVFDEMP-------DKSLVSWSAMVAGYG 441

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +G  +E I + + M  N   PD   F +++SACSH G V  G E F  M  +Y ++P  
Sbjct: 442 LHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPAL 501

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
            HYSC+VDLL RAG LD+A+ +I  M  +     +  +W ALL+A       +L +++AQ
Sbjct: 502 SHYSCMVDLLGRAGHLDEAYVIIRTMEIK----PTSDIWAALLTASRLHKNIKLAEISAQ 557

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           K  +++P  V  Y+ LSN+YA    WD++ ++R +++ KGLKK  GCS+IE+
Sbjct: 558 KVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIEL 609



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 179/368 (48%), Gaps = 27/368 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N   +N +I  +  NG P+ +L  +  M   G   D +     L A   +     G++V
Sbjct: 124 KNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRV 183

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + V   G  S ++VG++L+ +YAK   +  A ++FD +  ++    N ++SGY +    
Sbjct: 184 HSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADS 243

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN-DVFMQ 227
                +  LM   GL  D  TL  LL ACA L A + G+ +H Y +R   ++GN + F  
Sbjct: 244 GTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRN--SIGNYNKFFT 301

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +SLIEMY  C  +  A ++F       E    KD V W SM+  Y RNG   E ++L+  
Sbjct: 302 NSLIEMYCNCNCMVDARRLF-------ERVRWKDTVSWNSMILGYARNGDAFESLRLFRR 354

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLL 343
           M ++G+ PD+V F+ V+ AC     ++ G+      +H Y ++ G +      + LVD+ 
Sbjct: 355 MALDGSGPDQVTFIAVLGACDQIAALRYGMS-----IHSYLVKKGFDANTIVGTALVDMY 409

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPH 401
            + G L  + ++ +EM D+     S+  W A+++    H  G+  +  L   KA  + P 
Sbjct: 410 SKCGSLACSRRVFDEMPDK-----SLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPD 464

Query: 402 NVGIYVML 409
           N G++  +
Sbjct: 465 N-GVFTSI 471



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 146/315 (46%), Gaps = 25/315 (7%)

Query: 90  CSSLTAS-TSVKDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           C +L  S T+ K  + G+Q+ AH+     L ++ ++ + L   YA   L+  AE++FD I
Sbjct: 62  CGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGI 121

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
            +KNS   N ++ GY    L    L L R M   G   D+FT   +L+AC  L   E GR
Sbjct: 122 VLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGR 181

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           +VH+ ++   C L +D+++ +SL+ MY K G +  A  VF+    R       D+  W +
Sbjct: 182 RVHSEVV--VCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAER-------DLTSWNT 232

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           M+  Y +N        +++ M   G   D    + ++SAC+    VK G      ++H Y
Sbjct: 233 MISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGK-----VIHGY 287

Query: 328 KLEPGPEHY-----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
            +     +Y     + L+++ C    +  A +L     +R     +VS    +L    + 
Sbjct: 288 AVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRL----FERVRWKDTVSWNSMILGYARNG 343

Query: 383 GKFELGKLAAQKALE 397
             FE  +L  + AL+
Sbjct: 344 DAFESLRLFRRMALD 358


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 222/431 (51%), Gaps = 45/431 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS F + GSP  AL+ F  M +     +   +   L+A     D  FG+  
Sbjct: 195 KDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWA 254

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             ++ ++G   ++ + +A++D+Y K   + DA  +FD++  K+ V    ++ GY +   +
Sbjct: 255 CDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDY 314

Query: 169 AGGLELVRLMP--------ALGLDY------------------------DHFTLSALLRA 196
                +  +MP        AL   Y                        +  TL++ L A
Sbjct: 315 DAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAA 374

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA L A + G  +H Y+ ++   L  +  + +SLI+MY KCG + KAL+VF     R   
Sbjct: 375 CAQLGAMDLGGWIHVYIKKQGIKL--NFHITTSLIDMYSKCGHLEKALEVFYSVERR--- 429

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               DV +W++M+     +G+ +  I L+  M     KP+ V F  ++ ACSH+G V  G
Sbjct: 430 ----DVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEG 485

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             +F  M   Y + PG +HY+C+VD+L RAG L++A +LI +M        S S+WGALL
Sbjct: 486 RLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKM----PIVPSASVWGALL 541

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
            AC   G  EL ++A  + LE D +N G YV+LSN+YAK   WD + +LR+ MK  GL+K
Sbjct: 542 GACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEK 601

Query: 437 DVGCSWIEVTG 447
           + GCS IEV G
Sbjct: 602 EPGCSSIEVNG 612



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 198/437 (45%), Gaps = 51/437 (11%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN-PR-NPLPFNVVI 58
            +HAH   TGL         S   L +T C           C  F   PR N   +N +I
Sbjct: 48  QLHAHMLRTGLFFDP----PSATKL-FTACALSSPSSLDYACKVFDQIPRPNLYTWNTLI 102

Query: 59  SDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
             F  +  P+  L  F   +H    F ++Y     + A+T V     G+ +   V K+ +
Sbjct: 103 RAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASF 162

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            S +F+ ++LI  Y+ L  +  A L+F +I  K+ V  N+++SG+ +       L+L + 
Sbjct: 163 GSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKR 222

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M       +  T+  +L ACA     EFGR    Y+ R   ++  ++ + +++++MY KC
Sbjct: 223 MKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDI--NLILSNAMLDMYVKC 280

Query: 238 GLVTKALQVFN-------------LAGHRLEGEIN-----------KDVVLWTSMLGVYG 273
           G +  A ++F+             + G+   G+ +           +D+  W +++  Y 
Sbjct: 281 GSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQ 340

Query: 274 RNGYFKEVIKLYEAMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           +NG  KE + ++  + +N  TKP+EV   + ++AC+  G + LG     W +H Y  + G
Sbjct: 341 QNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLG----GW-IHVYIKKQG 395

Query: 333 PE---HYSC-LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFE 386
            +   H +  L+D+  + G L+KA ++   +  R      V +W A+++  A H  G+  
Sbjct: 396 IKLNFHITTSLIDMYSKCGHLEKALEVFYSVERR-----DVFVWSAMIAGLAMHGHGRAA 450

Query: 387 LGKLAAQKALELDPHNV 403
           +   +  +  ++ P+ V
Sbjct: 451 IDLFSKMQETKVKPNAV 467


>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 241/464 (51%), Gaps = 51/464 (10%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           +  ++L+  Y  C+H  +   + + L+    +N   +N +I+ + +N     A + F+ M
Sbjct: 59  LLATKLIFAYAICQHPYHSRLVFDSLQH---KNVFLWNSLINGYAKNRLYNEAFQLFNQM 115

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARF-GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
               +  D + L S+L+  +S   A F GK +     + G++S   V ++++ +Y K   
Sbjct: 116 CSSDVLPDDFTL-STLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGN 174

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYC-EAKLWAG------------------------- 170
             ++  +FDE+ ++NS   N L++GY     L  G                         
Sbjct: 175 FEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVEN 234

Query: 171 -----GLELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                 L L R M  + G++ +  +L ++L AC+  S    GRQ+H + +RK   L N+V
Sbjct: 235 GDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRK--ELNNEV 292

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + ++LI+MY KCG +  A +VF       +  + KD + W+SM+  YG +G  +E I L
Sbjct: 293 SLCNALIDMYSKCGSLDSARRVFE------DDSLCKDAISWSSMISGYGLHGKGQEAILL 346

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           Y+ ML  G +PD +  V ++SACS +G V  G+  +  +++DY +EP  E ++C+VD+L 
Sbjct: 347 YDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLG 406

Query: 345 RAGELDKAWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
           RAG+LD A   I  M ++ G      S+WGAL+S     G  E+ +LA +  ++L+P N 
Sbjct: 407 RAGQLDPALDFIKAMPVEPGP-----SVWGALVSCSIIHGDLEMQELAYRFLIQLEPENP 461

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             YV +SNLYA    WD + ++R +MK+K L+K  GCSWI +  
Sbjct: 462 SNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINN 505



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 140/301 (46%), Gaps = 28/301 (9%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           F  + AL  SL  S + K  +  +Q  + +   G   +  + + LI  YA     + + L
Sbjct: 20  FDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRL 79

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD +  KN    N+L++GY + +L+    +L   M +  +  D FTLS L +  + L A
Sbjct: 80  VFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGA 139

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------L 249
              G+ +H   IR      +D  + +S++ MY KCG   ++ +VF+             +
Sbjct: 140 LFSGKSIHGKSIR--IGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLI 197

Query: 250 AGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYEAM-LMNGTKPDE 297
           AG+ + G +            ++V  WT+M+  Y  NG   E + L+  M +++G +P+ 
Sbjct: 198 AGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNR 257

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           V+ V+V+ ACS    +  G +   + V   +L       + L+D+  + G LD A ++  
Sbjct: 258 VSLVSVLPACSSFSGLLSGRQIHGFAVRK-ELNNEVSLCNALIDMYSKCGSLDSARRVFE 316

Query: 358 E 358
           +
Sbjct: 317 D 317


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 137/402 (34%), Positives = 218/402 (54%), Gaps = 31/402 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-----IFLDTYALCSSLTASTSVKDAR 103
           RN + +  +I+ + +N     A K F  M           L  Y  C  L  ++ + +A 
Sbjct: 282 RNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
                         + SV   +A+I  + +   +  A  +FD++  K+    +A++  Y 
Sbjct: 342 P-------------IKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYE 388

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
              L    LEL R+M   G+  +  +L ++L  CAGL+  + GR++HA ++R   +L  D
Sbjct: 389 RKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDL--D 446

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V++ S L+ MY KCG + KA QVF+           KDVV+W S++  Y ++G   E ++
Sbjct: 447 VYVASVLLSMYIKCGNLAKAKQVFDRFAV-------KDVVMWNSIITGYAQHGLGVEALR 499

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           ++  M  +G  PD+V FV V+SACS+TG VK G+E F  M   Y++E   EHY+C+VDLL
Sbjct: 500 VFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLL 559

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            RAG+L++A  LI +M       +   +WGALL AC    K +L ++AA+K L L+P N 
Sbjct: 560 GRAGKLNEAMDLIEKM----PMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNA 615

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           G +++LSN+YA    WD++ +LR  M+++ + K  GCSWI V
Sbjct: 616 GPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVV 657



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 118/259 (45%), Gaps = 23/259 (8%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
            V   + +I  Y ++  + +A ++FDE+P +N V    +++GY + +      +L  +MP
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP 311

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
               + +  + +A+L+        +   ++   M  K       V   +++I  +G+ G 
Sbjct: 312 ----EKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKS------VVACNAMILCFGQNGE 361

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           V KA QVF+    + EG        W++M+ VY R G   + ++L+  M   G +P+  +
Sbjct: 362 VPKARQVFDQMREKDEG-------TWSAMIKVYERKGLELDALELFRMMQREGIRPNFPS 414

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
            ++V+S C+    +  G E    +V   + +      S L+ +  + G L KA     ++
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRS-QFDLDVYVASVLLSMYIKCGNLAKA----KQV 469

Query: 360 LDRGHGSSSVSMWGALLSA 378
            DR      V MW ++++ 
Sbjct: 470 FDR-FAVKDVVMWNSIITG 487



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 139/358 (38%), Gaps = 90/358 (25%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR-- 103
           +  +N + +N +++ + +N  P  A   F  M      +    L S    +  + +AR  
Sbjct: 124 MRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT-ISWNGLVSGYINNGMINEAREV 182

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           F +  + +V    W       +A++  Y K  +I +AE +F ++P KN V    +L G  
Sbjct: 183 FDRMPERNVV--SW-------TAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLL 233

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           +         L  +MP                                           D
Sbjct: 234 QEGRIDEACRLFDMMPE-----------------------------------------KD 252

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V  ++++I  Y + G + +A  +F+    R       +VV WT+M+  Y +N       K
Sbjct: 253 VVTRTNMIGGYCQVGRLVEARMLFDEMPRR-------NVVSWTTMITGYVQNQQVDIARK 305

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           L+E M     + +EV++  ++   ++ G++    E F  M       P     +C   +L
Sbjct: 306 LFEVM----PEKNEVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSVVACNAMIL 354

Query: 344 C--RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           C  + GE+ KA ++ ++M ++  G+     W A++            K+  +K LELD
Sbjct: 355 CFGQNGEVPKARQVFDQMREKDEGT-----WSAMI------------KVYERKGLELD 395


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 137/402 (34%), Positives = 218/402 (54%), Gaps = 31/402 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-----IFLDTYALCSSLTASTSVKDAR 103
           RN + +  +I+ + +N     A K F  M           L  Y  C  L  ++ + +A 
Sbjct: 282 RNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
                         + SV   +A+I  + +   +  A  +FD++  K+    +A++  Y 
Sbjct: 342 P-------------IKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYE 388

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
              L    LEL R+M   G+  +  +L ++L  CAGL+  + GR++HA ++R   +L  D
Sbjct: 389 RKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDL--D 446

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V++ S L+ MY KCG + KA QVF+           KDVV+W S++  Y ++G   E ++
Sbjct: 447 VYVASVLLSMYIKCGNLAKAKQVFDRFAV-------KDVVMWNSIITGYAQHGLGVEALR 499

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           ++  M  +G  PD+V FV V+SACS+TG VK G+E F  M   Y++E   EHY+C+VDLL
Sbjct: 500 VFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLL 559

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
            RAG+L++A  LI +M       +   +WGALL AC    K +L ++AA+K L L+P N 
Sbjct: 560 GRAGKLNEAMDLIEKM----PMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNA 615

Query: 404 GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           G +++LSN+YA    WD++ +LR  M+++ + K  GCSWI V
Sbjct: 616 GPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVV 657



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 118/259 (45%), Gaps = 23/259 (8%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
            V   + +I  Y ++  + +A ++FDE+P +N V    +++GY + +      +L  +MP
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP 311

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
               + +  + +A+L+        +   ++   M  K       V   +++I  +G+ G 
Sbjct: 312 ----EKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKS------VVACNAMILCFGQNGE 361

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           V KA QVF+    + EG        W++M+ VY R G   + ++L+  M   G +P+  +
Sbjct: 362 VPKARQVFDQMREKDEG-------TWSAMIKVYERKGLELDALELFRMMQREGIRPNFPS 414

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
            ++V+S C+    +  G E    +V   + +      S L+ +  + G L KA     ++
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRS-QFDLDVYVASVLLSMYIKCGNLAKA----KQV 469

Query: 360 LDRGHGSSSVSMWGALLSA 378
            DR      V MW ++++ 
Sbjct: 470 FDR-FAVKDVVMWNSIITG 487



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 139/358 (38%), Gaps = 90/358 (25%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR-- 103
           +  +N + +N +++ + +N  P  A   F  M      +    L S    +  + +AR  
Sbjct: 124 MRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT-ISWNGLVSGYINNGMINEAREV 182

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           F +  + +V    W       +A++  Y K  +I +AE +F ++P KN V    +L G  
Sbjct: 183 FDRMPERNVV--SW-------TAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLL 233

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           +         L  +MP                                           D
Sbjct: 234 QEGRIDEACRLFDMMPE-----------------------------------------KD 252

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           V  ++++I  Y + G + +A  +F+    R       +VV WT+M+  Y +N       K
Sbjct: 253 VVTRTNMIGGYCQVGRLVEARMLFDEMPRR-------NVVSWTTMITGYVQNQQVDIARK 305

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           L+E M     + +EV++  ++   ++ G++    E F  M       P     +C   +L
Sbjct: 306 LFEVM----PEKNEVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSVVACNAMIL 354

Query: 344 C--RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           C  + GE+ KA ++ ++M ++  G+     W A++            K+  +K LELD
Sbjct: 355 CFGQNGEVPKARQVFDQMREKDEGT-----WSAMI------------KVYERKGLELD 395


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 141/436 (32%), Positives = 224/436 (51%), Gaps = 22/436 (5%)

Query: 15  CLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYAL 71
           C +  ++ L+  Y  C      G L +  K  +    +N + +  +IS +   G    A+
Sbjct: 145 CDVFVKTSLVCLYAKC------GYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAI 198

Query: 72  KTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY 131
             F  +    +  D++ +   L+A T + D   G+ +   + + G + +VFVG++L+D+Y
Sbjct: 199 DMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMY 258

Query: 132 AKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191
           AK   +  A  +FD +P K+ V   A++ GY    L    ++L   M    +  D +T+ 
Sbjct: 259 AKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVV 318

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
            +L ACA L A E G  V   + R       +  + ++LI++Y KCG +++A +VF    
Sbjct: 319 GVLSACARLGALELGEWVSGLVDRN--EFLYNPVLGTALIDLYAKCGSMSRAWEVF---- 372

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
              +G   KD V+W +++     NGY K    L+  +   G KPD   F+ ++  C+H G
Sbjct: 373 ---KGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAG 429

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            V  G  YF  M   + L P  EHY C+VDLL RAG LD+A +LI  M       ++  +
Sbjct: 430 LVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNM----PMEANAIV 485

Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           WGALL AC      +L +LA ++ +EL+P N G YV+LSN+Y+    WDE  ++R  M E
Sbjct: 486 WGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNE 545

Query: 432 KGLKKDVGCSWIEVTG 447
           K ++K  GCSWIEV G
Sbjct: 546 KRIQKPPGCSWIEVDG 561



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 171/367 (46%), Gaps = 21/367 (5%)

Query: 40  TNCLKFL----NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           TN  +FL       N   +N +I     N     A++ +  M   G   + +     L A
Sbjct: 62  TNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKA 121

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
              + D + G ++   V K G+   VFV ++L+ LYAK   + DA  +FD+IP KN V  
Sbjct: 122 CARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSW 181

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
            A++SGY     +   +++ R +  + L  D FT+  +L AC  L     G  +H  ++ 
Sbjct: 182 TAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIME 241

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
               +  +VF+ +SL++MY KCG + KA  VF       +G   KD+V W +M+  Y  N
Sbjct: 242 M--GMVRNVFVGTSLVDMYAKCGNMEKARSVF-------DGMPEKDIVSWGAMIQGYALN 292

Query: 276 GYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
           G  KE I L+  M     KPD    V V+SAC+  G ++LG E+   +V   +    P  
Sbjct: 293 GLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG-EWVSGLVDRNEFLYNPVL 351

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG--KFELGKLAAQ 393
            + L+DL  + G + +AW++   M ++        +W A++S     G  K   G     
Sbjct: 352 GTALIDLYAKCGSMSRAWEVFKGMKEKDR-----VVWNAIISGLAMNGYVKISFGLFGQV 406

Query: 394 KALELDP 400
           + L + P
Sbjct: 407 EKLGIKP 413


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 134/428 (31%), Positives = 220/428 (51%), Gaps = 52/428 (12%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++S + R G    A + F    +  +F  T A+ S    +  +++A+     
Sbjct: 291 RDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWT-AIVSGYAQNGMLEEAKRVFDA 349

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL- 167
                   W       +A++  Y +  ++ +A+ +FD +P +N    N +L+GY +A + 
Sbjct: 350 MPDKNAVSW-------NAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGML 402

Query: 168 -----------------WAG-------------GLELVRLMPALGLDYDHFTLSALLRAC 197
                            WA               L+L + M   G   +    + +L  C
Sbjct: 403 DEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTC 462

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A ++A E G Q+H+ +I+    +G   F+ ++L+ MY KCG + +A   F       E  
Sbjct: 463 ADIAALECGMQLHSRLIKAGYGVG--CFVGNALLAMYFKCGSMEEAHSAF-------EEM 513

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
             +DVV W +M+  Y R+G+ KE +++++ M    TKPD++  V V++ACSH+G V+ GI
Sbjct: 514 EERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGI 573

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            YF  M  D+ +   PEHY+C++DLL RAG LD+A  L+ +M          +MWGALL 
Sbjct: 574 SYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDM----PFEPDSTMWGALLG 629

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           A       ELG+ AA+K  EL+P N G+YV+LSN+YA    W ++ ++R +M E+G+KK 
Sbjct: 630 ASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKV 689

Query: 438 VGCSWIEV 445
            G SWIEV
Sbjct: 690 PGFSWIEV 697



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/396 (19%), Positives = 165/396 (41%), Gaps = 66/396 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +NV+IS    +G  L +L      H   +  +  A+  +   +  V++ R  +  
Sbjct: 198 KDSVSYNVMISSHANHG--LVSLAR----HYFDLAPEKDAVSWNGMLAAYVRNGRIQEAR 251

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           +   +++ W       +AL+  Y +   I +A+ MF+++P ++ V  N ++SGY      
Sbjct: 252 ELFDSRTEW--DAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDM 309

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH----------------AY 212
           A    L  + P      D FT +A++   A     E  ++V                 AY
Sbjct: 310 AEARRLFDVAPI----RDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAY 365

Query: 213 MIRKCCNLGNDVFMQ---------SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           + R+      ++F           ++++  Y + G++ +A  +F +          KD V
Sbjct: 366 VQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQ-------KDAV 418

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W +ML  Y + G+ +E ++L++ M   G   +  AF  V+S C+    ++ G++     
Sbjct: 419 SWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQ----- 473

Query: 324 VHDYKLEPGPEHY-------SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +H   ++ G   Y       + L+ +  + G +++A     EM +R      V  W  ++
Sbjct: 474 LHSRLIKAG---YGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEER-----DVVSWNTMI 525

Query: 377 S--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +  A H  GK  L      +     P ++ +  +L+
Sbjct: 526 AGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLA 561



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 31/253 (12%)

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DAE +F  +P +++   N +L+GY         L   R +P      D F+ + LL A
Sbjct: 123 VPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRP----DSFSYNTLLHA 178

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
               S+    R +   M  K      D    + +I  +   GLV+ A   F+LA      
Sbjct: 179 LGVSSSLADVRALFDEMPVK------DSVSYNVMISSHANHGLVSLARHYFDLAP----- 227

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              KD V W  ML  Y RNG  +E  +L+++     T+ D +++  +++      Q++  
Sbjct: 228 --EKDAVSWNGMLAAYVRNGRIQEARELFDSR----TEWDAISWNALMAGYVQRSQIEEA 281

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            + F  M     +      ++ +V    R G++ +A +L +    R      V  W A++
Sbjct: 282 QKMFNKMPQRDVVS-----WNTMVSGYARRGDMAEARRLFDVAPIR-----DVFTWTAIV 331

Query: 377 SACHDCGKFELGK 389
           S     G  E  K
Sbjct: 332 SGYAQNGMLEEAK 344


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 222/400 (55%), Gaps = 13/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N++I+ + R G P   L+ F  M   GI  D +     +++   +K   +GKQ 
Sbjct: 175 KDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQT 234

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            AH+ ++G  S V V ++LID+Y +  ++  A  +F+ +  K+ +  +A++ GY +    
Sbjct: 235 HAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQS 294

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M + G+  D   +  +L A   + A E  + +H Y ++    L +   + +
Sbjct: 295 LTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMK--LGLTSLPSLNT 352

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +L+  Y KCG +  A ++F       E +I+ KD+++W SM+  +  +G + +  KLY  
Sbjct: 353 ALLITYAKCGSIEMAQRLFE------EEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNR 406

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M  + +KPD+V F+ +++AC ++G V+ G E+F+ M   Y  +P  EHY+C+V+LL RAG
Sbjct: 407 MKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAG 466

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            + +A +L+  M  +        +WG LLSAC      +L + AA+K + ++P N G Y+
Sbjct: 467 LISEAGELVKNMPIK----PDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYI 522

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+YA    WD + ++R  ++ KGLKK  GCSW+E+ G
Sbjct: 523 LLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWLEING 562



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 151/319 (47%), Gaps = 23/319 (7%)

Query: 64  NGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFV 123
           NG  ++  + F  M    +  D++   + L     +   +  K V      S     + V
Sbjct: 91  NGEGIF--RVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLV 148

Query: 124 GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL 183
            +A++ LY+KL  + DA  +FD++P K+ V  N +++ Y         LEL + M   G+
Sbjct: 149 NTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGI 208

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
             D FT   ++ + A L   ++G+Q HA+++R   +  + V + +SLI+MY +C ++  A
Sbjct: 209 RSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSD--SQVSVHNSLIDMYCECKILDSA 266

Query: 244 LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
            ++FN          +K V+ W++M+  Y +NG     + L+  M  +G + D V  + +
Sbjct: 267 CKIFNWM-------TDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINI 319

Query: 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEM 359
           + A  H G ++  ++Y    +H Y ++ G    P   + L+    + G ++ A +L  E 
Sbjct: 320 LPAFVHIGALE-NVKY----LHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEE- 373

Query: 360 LDRGHGSSSVSMWGALLSA 378
                    + MW +++SA
Sbjct: 374 --EKIDDKDLIMWNSMISA 390



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 136/296 (45%), Gaps = 25/296 (8%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           +TY     L + +S  +  FG+ +  ++ K G+     V +AL ++Y + +   +A  +F
Sbjct: 11  ETYPFV--LRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLF 68

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D+  VK+    ++L +   +     G   +   M A  L  D FT   LLR  AGL++ +
Sbjct: 69  DKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQ 128

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
             + VH   I     L  D+ + ++++ +Y K   +  A ++F+           KD V+
Sbjct: 129 LAKIVHCIAI--VSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPE-------KDRVV 179

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W  M+  Y R G   E ++L+++M  +G + D    + VIS+ +    V  G +      
Sbjct: 180 WNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQ-----T 234

Query: 325 HDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           H + L  G +     ++ L+D+ C    LD A K+ N M D+     SV  W A++
Sbjct: 235 HAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDK-----SVISWSAMI 285



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 110/272 (40%), Gaps = 16/272 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
             HAH    G      +   + L+  Y  C   K L +      ++  ++ + ++ +I  
Sbjct: 233 QTHAHILRNGS--DSQVSVHNSLIDMYCEC---KILDSACKIFNWMTDKSVISWSAMIKG 287

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + +NG  L AL  FS M   GI  D   + + L A   +      K +  +  K G  S 
Sbjct: 288 YVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSL 347

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDE--IPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
             + +AL+  YAK   I  A+ +F+E  I  K+ +  N+++S +     W+   +L   M
Sbjct: 348 PSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRM 407

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK-CCNLGNDVFMQSSLIEMYGKC 237
                  D  T   LL AC      E G++    M     C    + +  + ++ + G+ 
Sbjct: 408 KCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHY--ACMVNLLGRA 465

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           GL+++A ++           I  D  +W  +L
Sbjct: 466 GLISEAGELVK------NMPIKPDARVWGPLL 491



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 15/142 (10%)

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF--MQSSLIEMYG 235
           M A  +  D  T   +LR+C+  S   FGR +H Y+++    LG D+F  + ++L EMY 
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVK----LGFDLFDVVATALAEMYE 56

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG-RNGYFKEVIKLYEAMLMNGTK 294
           +C     A Q+F+    +  G        W S L   G +N   + + +++  M+     
Sbjct: 57  ECIEFENAHQLFDKRSVKDLG--------WPSSLTTEGPQNDNGEGIFRVFGRMIAEQLV 108

Query: 295 PDEVAFVTVISACSHTGQVKLG 316
           PD   F  ++   +    ++L 
Sbjct: 109 PDSFTFFNLLRFIAGLNSIQLA 130


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/433 (31%), Positives = 228/433 (52%), Gaps = 45/433 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  RN + + V+I  F + G    +++ F+ M    + +D +AL + ++   +  D   G
Sbjct: 352 LRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLG 411

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM---------------------- 143
            Q+ +   KSG   +V V ++LI +YAK   + +AEL+                      
Sbjct: 412 SQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQV 471

Query: 144 ---------FDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-LMPALGLDYDHFTLSAL 193
                    FD++  +N +  NA+L  Y +      GL++   ++    +  D  T   L
Sbjct: 472 GNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTL 531

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
            R CA + A + G Q+  + ++    L  D  + +++I MY KCG +++A + F+     
Sbjct: 532 FRGCADIGANKLGDQIIGHTVK--VGLILDTSVVNAVITMYSKCGRISEARKAFDFLSR- 588

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                 KD+V W +M+  Y ++G  K+ I++++ +L  G KPD +++V V+S CSH+G V
Sbjct: 589 ------KDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLV 642

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  YF+ M  D+ + PG EH+SC+VDLL RAG L +A  LI+EM  +     +  +WG
Sbjct: 643 EEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMK----PTAEVWG 698

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALLSAC   G  +L +LAA+   +LD    G Y++L+ +YA     D+  Q+R+LM++KG
Sbjct: 699 ALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKG 758

Query: 434 LKKDVGCSWIEVT 446
           +KK  G SW+EV 
Sbjct: 759 IKKSPGYSWMEVN 771



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 147/331 (44%), Gaps = 39/331 (11%)

Query: 21  SRLMLPYTTCRHKKNLGTLTN--------CLKFLNPRNPLPFNVVISDFCRNGSPLYALK 72
           SR+  P   CR+   +G   +          K +  R+ + +N+VIS   ++G    AL 
Sbjct: 218 SRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALD 277

Query: 73  TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
               MH  G+  D+    SSLTA   +    +GKQ+   V ++      +V SA+++LYA
Sbjct: 278 MVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYA 337

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
           K     +A+ +F  +  +NSV    L+ G+ +   ++  +EL   M A  +  D F L+ 
Sbjct: 338 KCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALAT 397

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQVFNLA 250
           L+  C        G Q+H+     C   G+   V + +SLI MY KCG +  A  +FN  
Sbjct: 398 LISGCCNTMDICLGSQLHSL----CLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFM 453

Query: 251 GHR------------------------LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
             R                         +    ++V+ W +MLG Y ++G  ++ +K+Y 
Sbjct: 454 AERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYS 513

Query: 287 AMLM-NGTKPDEVAFVTVISACSHTGQVKLG 316
            ML      PD V +VT+   C+  G  KLG
Sbjct: 514 DMLTEKDVIPDWVTYVTLFRGCADIGANKLG 544



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 167/389 (42%), Gaps = 58/389 (14%)

Query: 36  LGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCS 91
           LG+L++ ++    +  R+   +N ++S + ++G  L AL  F  M   G  L + +    
Sbjct: 105 LGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGC 164

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            + +  ++       Q+   ++K        V +AL+D+  +   +  A   F  I    
Sbjct: 165 VMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPT 224

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMP-------------------------------A 180
            +C N++L GY ++      LE+ + MP                                
Sbjct: 225 IICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHG 284

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  D  T ++ L ACA LS+ E+G+Q+H  +IR   ++  D ++ S+++E+Y KCG  
Sbjct: 285 KGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHI--DPYVASAMVELYAKCGCF 342

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +A +VF+    R       + V WT ++G + + G F E ++L+  M       D+ A 
Sbjct: 343 KEAKRVFSSLRDR-------NSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFAL 395

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLI 356
            T+IS C +T  + LG +     +H   L+ G        + L+ +  + G L  A  + 
Sbjct: 396 ATLISGCCNTMDICLGSQ-----LHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIF 450

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           N M +R      +  W  +++A    G  
Sbjct: 451 NFMAER-----DIVSWTGMITAYSQVGNI 474



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 127/285 (44%), Gaps = 28/285 (9%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           +V   + +++ YAKL  + DA  +F  +P ++    N ++SGY ++  +   L++   M 
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 180 ALGLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
             G    + FT   ++++C  L   E   Q+   + +   +  +D  +Q++L++M  +CG
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSK--FDSQDDPDVQTALVDMLVRCG 208

Query: 239 LVTKALQVFN-------------LAG--------HRLE---GEINKDVVLWTSMLGVYGR 274
            +  A + F+             L G        H LE       +DVV W  ++    +
Sbjct: 209 AMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSK 268

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +G  +E + +   M   G +PD   + + ++AC+    ++ G +    ++ +      P 
Sbjct: 269 SGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLP-HIDPY 327

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
             S +V+L  + G   +A ++ + + DR   S +V + G L   C
Sbjct: 328 VASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGC 372



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 29/196 (14%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF-- 247
           L+  LR+C   SA    R +H+ +I     L + VF+Q++L+  Y  CG ++ A  +   
Sbjct: 28  LADALRSCGARSALTGARTLHSRLIN--VGLASVVFLQNTLLHAYLSCGALSDARNLLRD 85

Query: 248 -----NLAGH-----------------RLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKL 284
                N+  H                  L G +  +DV  W +++  Y ++G F   + +
Sbjct: 86  EITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDI 145

Query: 285 YEAMLMNGTK-PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
           + +M   G   P+   F  V+ +C   G  ++ ++    ++  +  +  P+  + LVD+L
Sbjct: 146 FVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLG-LLSKFDSQDDPDVQTALVDML 204

Query: 344 CRAGELDKAWKLINEM 359
            R G +D A K  + +
Sbjct: 205 VRCGAMDFASKQFSRI 220


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 129/426 (30%), Positives = 221/426 (51%), Gaps = 45/426 (10%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           NP  ++ +I  + RNG   ++++ ++ M  + +   ++   +  +    +K+   G Q+ 
Sbjct: 76  NPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSL---LKNPSLGSQLH 132

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE----------------------- 146
            H    G+++ ++VG+ +I +Y K  ++  A  +FDE                       
Sbjct: 133 LHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMD 192

Query: 147 --------IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
                   +PVK+ V   ++++GY +  +    L+  R M   G+  D  TL   + ACA
Sbjct: 193 SACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACA 252

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            L  + +   +           G++VF+ S+LI+MY KCG V +A  VF       +G  
Sbjct: 253 QLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVF-------KGMK 305

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
             +V  ++SM+  +  +G  +  IKL+  ML NG KP+ V FV + +ACSH G V+ G +
Sbjct: 306 EMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQ 365

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            F  M   Y + P  +HY+C+ DLL RAG L+KA +L+  M    +G     +WGALL A
Sbjct: 366 LFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNG----GVWGALLGA 421

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
            H  G  ++ ++A++   EL+P N+G Y++LS  YA    WD++ ++R+LM+EK L+K+ 
Sbjct: 422 SHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNP 481

Query: 439 GCSWIE 444
           GCSW+E
Sbjct: 482 GCSWVE 487


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 132/418 (31%), Positives = 220/418 (52%), Gaps = 28/418 (6%)

Query: 33  KKNLGTLTNCLKFLNPRNP----LPFNVVISDFCRNG-SPLYALKTFSFMHVHGIFLDTY 87
           K N+G   +    +  R P    + +  +IS + ++G      +  F  M    I  +  
Sbjct: 301 KSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHI 360

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
              S L +  S+ D   G+QV AHV KS   S+  VG+AL+ +YA+   + +A  +F   
Sbjct: 361 TYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVF--- 417

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
              N +   +++    E + +     +VR+     +     T ++L+ A A +     G+
Sbjct: 418 ---NQLYERSMIPCITEGRDFPLDHRIVRM----DVGISSSTFASLISAAASVGMLTKGQ 470

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q+HA  ++     G+D F+ +SL+ MY +CG +  A + FN    R       +V+ WTS
Sbjct: 471 QLHAMSLK--AGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDR-------NVISWTS 521

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           M+    ++GY +  + L+  M++ G KP++V ++ V+SACSH G V+ G EYF  M  D+
Sbjct: 522 MISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDH 581

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
            L P  EHY+C+VDLL R+G + +A + INEM  +    +   +W  LL AC      E+
Sbjct: 582 GLIPRMEHYACMVDLLARSGIVKEALEFINEMPLK----ADALVWKTLLGACRSHDNIEV 637

Query: 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           G++ A+  +EL+P +   YV+LSNLYA   +WDE+ ++R  M++  L K+ G SW+EV
Sbjct: 638 GEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEV 695



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 147/319 (46%), Gaps = 14/319 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK-DARFGKQ 107
           R+ + +  + S   RNG+   +L     M   G+  + Y LC++  A    +     G  
Sbjct: 114 RDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGV 173

Query: 108 VQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           V   V K G W + V VGSALID+ A+   +  A  +FD +  K  V    L+S Y + +
Sbjct: 174 VLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGE 233

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                +EL       G + D +T+S+++ AC  L +   G Q+H+  +R    L +D  +
Sbjct: 234 CAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALR--MGLASDACV 291

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK-EVIKLY 285
              L++MY K  +     Q  + A    E     DV+ WT+++  Y ++G  + +V+ L+
Sbjct: 292 SCGLVDMYAKSNIG----QAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALF 347

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLL 343
             ML    KP+ + + +++ +C+       G +      H  K      H   + LV + 
Sbjct: 348 GEMLNESIKPNHITYSSILKSCASISDHDSGRQVH---AHVIKSNQASAHTVGNALVSMY 404

Query: 344 CRAGELDKAWKLINEMLDR 362
             +G +++A ++ N++ +R
Sbjct: 405 AESGCMEEARRVFNQLYER 423



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 157/339 (46%), Gaps = 51/339 (15%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           + ++IS + +      A++ F      G   D Y + S ++A T +   R G Q+ +   
Sbjct: 222 WTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLAL 281

Query: 114 KSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
           + G  S   V   L+D+YAK  +   +  A  +F+ +P  + +   AL+SGY ++     
Sbjct: 282 RMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQS----- 336

Query: 171 GLELVRLMPALG------LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           G++  ++M   G      +  +H T S++L++CA +S  + GRQVHA++I+   N  +  
Sbjct: 337 GVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKS--NQASAH 394

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG--VYGRNGYFKEVI 282
            + ++L+ MY + G + +A +VFN    R             SM+     GR+      I
Sbjct: 395 TVGNALVSMYAESGCMEEARRVFNQLYER-------------SMIPCITEGRDFPLDHRI 441

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP--GPEHY--SC 338
              +  + + T      F ++ISA +  G +  G +     +H   L+   G + +  + 
Sbjct: 442 VRMDVGISSST------FASLISAAASVGMLTKGQQ-----LHAMSLKAGFGSDRFVSNS 490

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           LV +  R G L+ A +  NE+ DR     +V  W +++S
Sbjct: 491 LVSMYSRCGYLEDACRSFNELKDR-----NVISWTSMIS 524



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 20/283 (7%)

Query: 101 DARFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVCANAL 158
           D R G+ +   + +   L     V ++L+ LY++   +  A  +FD +  +++ V   A+
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAM 122

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
            S         G L L+  M   GL  + +TL A   AC           V   ++ K  
Sbjct: 123 ASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMG 182

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
             G DV + S+LI+M  + G +  A +VF       +G I K VV+WT ++  Y +    
Sbjct: 183 LWGTDVAVGSALIDMLARNGDLASARKVF-------DGLIEKTVVVWTLLISRYVQGECA 235

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           +E ++L+   L +G +PD     ++ISAC+  G V+LG++     +H   L  G    +C
Sbjct: 236 EEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-----LHSLALRMGLASDAC 290

Query: 339 ----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
               LVD+  ++  + +A    N++ +R   +  +S W AL+S
Sbjct: 291 VSCGLVDMYAKSN-IGQAMDYANKVFERMPKNDVIS-WTALIS 331


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 224/420 (53%), Gaps = 14/420 (3%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS-PLYALKTFSFMHVHGIFLD 85
           Y  C    ++       + +   N + +  +I+ + ++G     A++ F  M    I  +
Sbjct: 96  YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPN 155

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
            ++  S L A  ++ D   G+QV ++  K G  S   VG++LI +YA+   + DA   FD
Sbjct: 156 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 215

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
            +  KN V  NA++ GY +         L   +   G+    FT ++LL   A + A   
Sbjct: 216 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 275

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G Q+H  +++      ++  + ++LI MY +CG +  A QVFN     +E   +++V+ W
Sbjct: 276 GEQIHGRLLKG--GYKSNQCICNALISMYSRCGNIEAAFQVFN----EME---DRNVISW 326

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           TSM+  + ++G+    ++++  ML  GTKP+E+ +V V+SACSH G +  G ++F  M  
Sbjct: 327 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYK 386

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           ++ + P  EHY+C+VDLL R+G L +A + IN M       +   +W  LL AC   G  
Sbjct: 387 EHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM----PLMADALVWRTLLGACRVHGNT 442

Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           ELG+ AA+  LE +P +   Y++LSNL+A    W ++ ++R+ MKE+ L K+ GCSWIEV
Sbjct: 443 ELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEV 502



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 164/337 (48%), Gaps = 27/337 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + + ++I+ F + G    A+  F  M + G   D +   S L+A T +     GKQ+
Sbjct: 14  RNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL 73

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEIPVKNSVCANALLSGYCEA 165
            + V + G    V VG +L+D+YAK      + D+  +F+++P  N +   A+++ Y ++
Sbjct: 74  HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQS 133

Query: 166 -KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            +     +EL   M +  +  +HF+ S++L+AC  LS    G QV++Y ++    + +  
Sbjct: 134 GECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK--LGIASVN 191

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + +SLI MY + G +  A + F++          K++V + +++  Y +N   +E   L
Sbjct: 192 CVGNSLISMYARSGRMEDARKAFDIL-------FEKNLVSYNAIVDGYAKNLKSEEAFLL 244

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LV 340
           +  +   G       F +++S  +  G +  G +     +H   L+ G +   C    L+
Sbjct: 245 FNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-----IHGRLLKGGYKSNQCICNALI 299

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            +  R G ++ A+++ NEM DR     +V  W ++++
Sbjct: 300 SMYSRCGNIEAAFQVFNEMEDR-----NVISWTSMIT 331



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 22/228 (9%)

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD++P +N V    +++ + +       ++L   M   G   D FT S++L AC  L  
Sbjct: 7   VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 66

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC---GLVTKALQVFNLAGHRLEGEIN 259
              G+Q+H+ +IR    L  DV +  SL++MY KC   G V  + +VF       E    
Sbjct: 67  LALGKQLHSRVIR--LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF-------EQMPE 117

Query: 260 KDVVLWTSMLGVYGRNGYF-KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            +V+ WT+++  Y ++G   KE I+L+  M+    +P+  +F +V+ AC +     L   
Sbjct: 118 HNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN-----LSDP 172

Query: 319 YFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDR 362
           Y    V+ Y ++ G    +C    L+ +  R+G ++ A K  + + ++
Sbjct: 173 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 220


>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
          Length = 396

 Score =  221 bits (564), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 201/361 (55%), Gaps = 13/361 (3%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           B   L + L+    + D   G +++         S++ V +A++++Y K   + D  L+F
Sbjct: 5   BEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVF 64

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +  ++ V  +A+++GY +       LEL   M +  +  +  TL ++L ACA L + E
Sbjct: 65  DHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSVE 124

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G ++ +Y+  +   L ++V++ S+L+ MY KCG + KA Q+F+    R       D V 
Sbjct: 125 TGERIGSYVESR--GLISNVYVASALLGMYSKCGNIIKARQIFDKLPQR-------DNVT 175

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W SM+     NG+ ++ I LY  M     KP+ + FV +++AC+H G V+LG+E+F  M 
Sbjct: 176 WNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSMR 235

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            D+ + P  EH++C+VDL CR+G L  A++ I  M        +V +WG LLSA      
Sbjct: 236 SDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRM----EVEPNVVIWGTLLSASRIHLN 291

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            EL +LA +K LEL+P N G YV+LSN+YA    W E  ++R+LMK+K ++K    SW+E
Sbjct: 292 VELAELAGKKLLELEPDNSGNYVILSNIYASASRWQEALKVRKLMKDKRVQKAAAYSWVE 351

Query: 445 V 445
           V
Sbjct: 352 V 352



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 108/221 (48%), Gaps = 7/221 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + ++ +I+ + +NG    AL+ F  M    I  +   L S L+A   +     G+++
Sbjct: 70  RDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSVETGERI 129

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            ++V   G +S+V+V SAL+ +Y+K   I  A  +FD++P +++V  N+++ G       
Sbjct: 130 GSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFA 189

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + L   M  + +  ++ T   LL AC      E G +    M R   N+  ++   +
Sbjct: 190 EDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSM-RSDHNISPNIEHFA 248

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
            +++++ + G +  A +       R+E E N  VV+W ++L
Sbjct: 249 CIVDLFCRSGRLIDAYEFI----CRMEVEPN--VVIWGTLL 283


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 114/326 (34%), Positives = 193/326 (59%), Gaps = 13/326 (3%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           ++   +A+I  Y K      A+++FD+IP ++    NA+++GY +       L+L   M 
Sbjct: 232 NIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQML 291

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
            +G+  DH TL ++L AC+ L++ + GR+ H  +++      + + + ++LI MY KCG 
Sbjct: 292 KMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLK--SGYESRISICNALITMYCKCGS 349

Query: 240 VTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA 299
           +  +   F    H        DVV W +M+  + R+G++   +  +  M  N  +PD + 
Sbjct: 350 ILDSELAFRQIDH-------PDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGIT 402

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           F++++SAC H G+V   + +F  M+  YK+   PEH++CLVD+L R G+++KA+K+I EM
Sbjct: 403 FLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEM 462

Query: 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419
                  +   +WGALL+ACH     +LG+LAA+K +EL+P N G YV+LSN+YA   MW
Sbjct: 463 ----PFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMW 518

Query: 420 DEIGQLRELMKEKGLKKDVGCSWIEV 445
            E+ ++R LM+E+G+KK    SW+E+
Sbjct: 519 GEVTRVRGLMREQGVKKQPAYSWMEI 544



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 76/149 (51%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +N +I+ + +NGS   ALK  S M   G+  D   L S LTA +S+   + G++ 
Sbjct: 262 RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKT 321

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V KSG+ S + + +ALI +Y K   I D+EL F +I   + V  NA+++ +     +
Sbjct: 322 HVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFY 381

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRAC 197
              L     M +  ++ D  T  +LL AC
Sbjct: 382 DRALASFGEMRSNRVEPDGITFLSLLSAC 410



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 142/351 (40%), Gaps = 53/351 (15%)

Query: 48  PRNP----LPFNVVISDFCRNGSPLYALKTFSFMHVHG--IFLDTYALCSSLTASTSVKD 101
           PR+P      F  +   F R   PL ++K FS   V+   + +   A   ++ A+  V D
Sbjct: 13  PRSPSIIRTIFLPIFHSFNRQFHPL-SIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFD 71

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
                    H     W +S+  G      Y K     +++ +F  +P KN V  N++++G
Sbjct: 72  E------MPHRDTVSW-NSIITG------YWKNGCFDESKRLFGLMPTKNVVSWNSMIAG 118

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
             E +      +  + MP       +  +S L+R        E   ++   M R+     
Sbjct: 119 CIEDERIDEAWQYFQAMPQRNTASWNAMISGLVR----YDRVEEASRLFEEMPRR----- 169

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            +V   +++++ Y K G + +A  +FN           K+VV WT M+  Y  NG F E 
Sbjct: 170 -NVISYTAMVDGYAKIGEIEQARALFNCMPQ-------KNVVSWTVMISGYVENGKFDEA 221

Query: 282 IKLYEAMLMNGTKPDE--VAFVTVISA-CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
             L+E M      PD+  VA   +I+  C      K  I + +    D         ++ 
Sbjct: 222 ENLFEQM------PDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLA------SWNA 269

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
           ++    + G  ++A KL ++ML  G      ++  ++L+AC      + G+
Sbjct: 270 MITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLI-SVLTACSSLASLQEGR 319


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 132/405 (32%), Positives = 225/405 (55%), Gaps = 28/405 (6%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAH- 111
           +N +I+ + +N     AL  F  M    G+  ++  +   + A   V+   F K+   H 
Sbjct: 368 WNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPAC--VRSGAFSKKEAIHG 425

Query: 112 -VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            V K G     FV +AL+D+Y++L  I  A+ +F ++  ++ V  N +++GY  ++    
Sbjct: 426 FVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHED 485

Query: 171 GLELVRLMPAL-----------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
            L ++  M  L            L  +  TL  +L +CA LSA   G+++HAY I+   N
Sbjct: 486 ALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--N 543

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L  DV + S+L++MY KCG +  + +VF+    R       +V+ W  ++  YG +G  +
Sbjct: 544 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-------NVITWNVIVMAYGMHGNSQ 596

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           + I +   M++ G KP+EV F++V +ACSH+G V  G++ F  M  DY +EP  +HY+C+
Sbjct: 597 DAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACV 656

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL RAG + +A++LIN ++ R    +    W +LL AC      E+G++AAQ  ++L+
Sbjct: 657 VDLLGRAGRVKEAYQLIN-LIPRNFDKAGA--WSSLLGACRIHNNLEIGEIAAQNLIQLE 713

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           P+    YV+L+N+Y+   +W +  ++R  MK +G++K+ GCSWIE
Sbjct: 714 PNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIE 758



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 154/313 (49%), Gaps = 21/313 (6%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW-LSSVFVGSALI 128
           A+ T+  M V GI  D +A  + L A   ++D   GKQ+ AHV K G+ + SV V + L+
Sbjct: 77  AVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLV 136

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
           +LY K         +FD I  +N V  N+L+S  C  + W   LE  R M    ++   F
Sbjct: 137 NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSF 196

Query: 189 TLSALLRACAGLSAAE---FGRQVHAYMIRKCCNLGN-DVFMQSSLIEMYGKCGLVTKAL 244
           TL ++  AC+     E    G+QVHAY +RK    G  + F+ ++L+ MYGK G +  + 
Sbjct: 197 TLVSVALACSNFPMPEGLLMGKQVHAYGLRK----GELNSFIINTLVAMYGKMGKLASSK 252

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            +        EG   +D+V W ++L    +N  F E ++    M++ G +PD     +V+
Sbjct: 253 VLLG----SFEG---RDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVL 305

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
            ACSH   ++ G E   + + +  L+      S LVD+ C   ++    ++ + M DR  
Sbjct: 306 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDR-- 363

Query: 365 GSSSVSMWGALLS 377
               + +W A+++
Sbjct: 364 ---KIGLWNAMIT 373



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 165/343 (48%), Gaps = 28/343 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N V+S  C+N   L AL+    M + G+  D + + S L A + ++  R GK++
Sbjct: 261 RDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKEL 320

Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
            A+  K+G L  + FVGSAL+D+Y     +     +FD +  +     NA+++GY + + 
Sbjct: 321 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEY 380

Query: 168 WAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
               L L + +  + GL  +  T++ ++ AC    A      +H +++++   L  D F+
Sbjct: 381 DEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKR--GLDRDRFV 438

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI---- 282
           Q++L++MY + G +  A ++F     ++E   ++D+V W +++  Y  +   ++ +    
Sbjct: 439 QNALMDMYSRLGKIDIAKRIFG----KME---DRDLVTWNTIITGYVFSERHEDALLMLH 491

Query: 283 -------KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
                  K  E       KP+ +  +T++ +C+    +  G E   + + +  L      
Sbjct: 492 KMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAV 550

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            S LVD+  + G L  + K+ +++  R     +V  W  ++ A
Sbjct: 551 GSALVDMYAKCGCLQMSRKVFDQIPIR-----NVITWNVIVMA 588


>gi|125591533|gb|EAZ31883.1| hypothetical protein OsJ_16048 [Oryza sativa Japonica Group]
          Length = 674

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 134/434 (30%), Positives = 239/434 (55%), Gaps = 22/434 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I  + L++ Y+ C    N+ T  +    L  ++ + +N +++ F +N   L  L     
Sbjct: 222 VILGNALVVMYSRC---GNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYE 278

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G   D+  L + L+AS++  D + GKQ   ++ + G +    + S LID+YAK   
Sbjct: 279 MQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHG-IEGEGLESYLIDMYAKSGR 337

Query: 137 IHDAELMFDEI--PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
           +  A+ +FD      ++ V  NA+++GY ++      + + R M   GL+    TL+++L
Sbjct: 338 VEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVL 397

Query: 195 RACAGLSAAEF-GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
            AC  +    + G+Q+H + +R+C  L  +VF+ ++LI+MY KCG +T A  VF      
Sbjct: 398 PACDPVGGGVYSGKQIHCFAVRRC--LDTNVFVGTALIDMYSKCGEITTAENVFG----- 450

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
             G   K  V +T+M+   G++G+ K+ + L+ +M   G KPD V F++ ISAC+++G V
Sbjct: 451 --GMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLV 508

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G+  +  M   + +   P+H+ C+ DLL +AG +++A++ I  + + G+    V++WG
Sbjct: 509 DEGLALYRSM-DSFGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGN---FVAIWG 564

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPH--NVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           +LL++C   GK EL KL  +K L+++    + G  V+LS + A    W+    LR+ M+ 
Sbjct: 565 SLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRA 624

Query: 432 KGLKKDVGCSWIEV 445
           +GLKK+ G SWI+V
Sbjct: 625 RGLKKEAGSSWIKV 638



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 25/363 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           +N   +N +I+ + +NG    A+  FS  +    + LD     S+LTA++  +D   G+Q
Sbjct: 148 KNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQ 207

Query: 108 VQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           +  ++ K    +  V +G+AL+ +Y++   +  A  +FD +P K+ V  N +++ + +  
Sbjct: 208 LHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQND 267

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
               GL LV  M   G   D  TL+A+L A +     + G+Q H Y+IR          +
Sbjct: 268 FDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEG---L 324

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           +S LI+MY K G V  A +VF+   +       +D V W +M+  Y ++G  ++ I ++ 
Sbjct: 325 ESYLIDMYAKSGRVEMAQRVFDSFKN-----AKRDEVTWNAMIAGYTQSGQPEKAILVFR 379

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK----LEPGPEHYSCLVDL 342
           AML  G +P  V   +V+ AC   G    G  Y    +H +     L+      + L+D+
Sbjct: 380 AMLEAGLEPTSVTLASVLPACDPVG----GGVYSGKQIHCFAVRRCLDTNVFVGTALIDM 435

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDP 400
             + GE+  A  +   M     G S+V+ +  ++S    H  GK  L    + +   L P
Sbjct: 436 YSKCGEITTAENVFGGMT----GKSTVT-YTTMISGLGQHGFGKKALALFNSMQEKGLKP 490

Query: 401 HNV 403
             V
Sbjct: 491 DAV 493



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 189/399 (47%), Gaps = 20/399 (5%)

Query: 17  IIFQSRLMLPYTTCRHKK-NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFS 75
           ++  S L L  ++ R+++  +  +      +  RN + +N +   + + G P  AL+ F 
Sbjct: 13  VLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFV 72

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG--WLSSVFVGSALIDLYAK 133
            M   G F  T     ++  +    D  +  Q+   + K G  +++ +FV S+ ID++++
Sbjct: 73  RMLEDG-FRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSE 131

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSA 192
              +  A  +FD    KN+   N +++GY +   ++  ++L  +++ +  +  D  T  +
Sbjct: 132 FGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLS 191

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
            L A +       G+Q+H Y+I K  +    V + ++L+ MY +CG V  A  +F+    
Sbjct: 192 ALTAASQSQDVSLGQQLHGYLI-KGMHRTLPVILGNALVVMYSRCGNVQTAFDLFD---- 246

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
           RL     KD+V W +M+  + +N +  E + L   M  +G   D V    V+SA S+TG 
Sbjct: 247 RLP---EKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGD 303

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           +++G +   +++       G E Y  L+D+  ++G ++ A ++ +   +      +   W
Sbjct: 304 LQIGKQAHGYLIRHGIEGEGLESY--LIDMYAKSGRVEMAQRVFDSFKNAKRDEVT---W 358

Query: 373 GALLSACHDCGKFELGKLAAQKALE--LDPHNVGIYVML 409
            A+++     G+ E   L  +  LE  L+P +V +  +L
Sbjct: 359 NAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVL 397



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 27/183 (14%)

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
           M+R+  +L +   +++SL+ +Y       +A    ++     +    ++VV W ++ G Y
Sbjct: 1   MLRRARSLPDTAVLRNSLLNLYASSVRYREAR--VDVVRRLFDAMPKRNVVSWNTLFGWY 58

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ----------VKLGIEYFEW 322
            + G  +E ++L+  ML +G +P  V+FV +  A                VK G+EY   
Sbjct: 59  VKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEY--- 115

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
            ++D  +       S  +D+    G++  A ++     DR     +  +W  +++     
Sbjct: 116 -INDLFV------VSSAIDMFSEFGDVQSARRV----FDRA-AKKNTEVWNTMITGYVQN 163

Query: 383 GKF 385
           G+F
Sbjct: 164 GQF 166


>gi|414879360|tpg|DAA56491.1| TPA: hypothetical protein ZEAMMB73_164599 [Zea mays]
          Length = 520

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 137/399 (34%), Positives = 209/399 (52%), Gaps = 20/399 (5%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK-DARFGKQVQAHV 112
           +N  IS   R G    AL  F  M   G+  D Y L   L ++  ++        + A +
Sbjct: 12  YNAAISRCARAGLYARALALFREMRGRGLRADEYTLPPLLNSAAQLRGPPEAVAALHALL 71

Query: 113 TKSGWLSSVFVGSALIDLYAKL--LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            ++G    + V +AL+D YA+L       A  +FDE+P ++ V   +LL+G   A     
Sbjct: 72  LRAGLAPHLHVANALVDAYARLPHAGAAAARAVFDEMPRRDVVTWTSLLTGLARAGAHGA 131

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF--MQS 228
            +     M A G+  D F + A L +CA  +A + GR VHA  +R    LG   F  +++
Sbjct: 132 AVRAYHGMVASGVQPDEFAVPAALSSCAASTALDLGRSVHAAAVR----LGLRPFRSVEN 187

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL+ MY K G +  A  VF+    R         + WT+++  Y +NG  ++ +++Y  M
Sbjct: 188 SLVSMYAKTGALRDARAVFDAMPARC-------TITWTALIVGYAQNGRGRQSLEVYADM 240

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           + +G +PD V F+ ++ ACSH G V  G  +F  MV  Y + PGP+HY+C+VDLL RAG 
Sbjct: 241 VRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMVPVYGIAPGPDHYACMVDLLGRAGR 300

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           LD+A  L+N    R       ++W +LL AC      EL + AA+    LDP +   YVM
Sbjct: 301 LDEAMDLLN----RSSTELDATVWKSLLGACRVHQNAELAERAAEMVWRLDPADAVPYVM 356

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSNLY++   W ++ ++R LMK +G+ K+ GCSW+ V G
Sbjct: 357 LSNLYSRARRWGDVARIRALMKARGVTKEPGCSWVGVNG 395



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 17/227 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +++   R G+   A++ +  M   G+  D +A+ ++L++  +      G+ V
Sbjct: 111 RDVVTWTSLLTGLARAGAHGAAVRAYHGMVASGVQPDEFAVPAALSSCAASTALDLGRSV 170

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   + G      V ++L+ +YAK   + DA  +FD +P + ++   AL+ GY +    
Sbjct: 171 HAAAVRLGLRPFRSVENSLVSMYAKTGALRDARAVFDAMPARCTITWTALIVGYAQNGRG 230

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRAC--AGL---SAAEFGRQVHAYMIRKCCNLGND 223
              LE+   M   G   D+ T   LL AC  AGL     A F   V  Y I      G D
Sbjct: 231 RQSLEVYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMVPVYGIAP----GPD 286

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            +  + ++++ G+ G + +A+ + N +   L      D  +W S+LG
Sbjct: 287 HY--ACMVDLLGRAGRLDEAMDLLNRSSTEL------DATVWKSLLG 325


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 139/407 (34%), Positives = 220/407 (54%), Gaps = 17/407 (4%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI--FLDTYALCSSLTASTSVK 100
            +++  R+ + +N +I+ +   G    AL TF  M    I    D + L S L A +S  
Sbjct: 528 FRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTG 587

Query: 101 DARFGKQVQAHVTKSGW--LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANAL 158
               GKQ+   + +SG+   SS  +  +L+DLY K   +  A   FD+I  K  +  ++L
Sbjct: 588 MIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSL 647

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
           + GY +   +   + L + +  L    D F LS+++   A  +  + G+Q+ A +++   
Sbjct: 648 ILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPS 707

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
            L   V   +SL++MY KCGLV +A + F  A  +L     KDV+ WT M+  YG++G  
Sbjct: 708 GLETSV--SNSLVDMYLKCGLVDEAEKCF--AEMQL-----KDVISWTVMITGYGKHGLG 758

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           K+ + ++  ML +  +PDEV ++ V+SACSH+G +K G E F  ++    ++P  EHY+C
Sbjct: 759 KKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYAC 818

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +VDLL RAG L +A  L++ M  +     +V +W  LLS C   G  ELGK   +  L +
Sbjct: 819 VVDLLGRAGRLKEAKHLVDTMPIK----PNVGIWQTLLSLCRVHGDIELGKEVGKILLRI 874

Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           D  N   YVM+SNLY +   W+E G  REL   KGL+K+ G SW+E+
Sbjct: 875 DGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEI 921



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 170/359 (47%), Gaps = 22/359 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  ++S    NG    +L  F+ M   GI+ + +   ++L A   +     G Q+
Sbjct: 433 RNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQI 492

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G+   V VG++L+D+Y+K   I++AE +F  +  ++ +  NA+++GY  A   
Sbjct: 493 HGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYG 552

Query: 169 AGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           +  L    +M    +    D FTL++LL+AC+       G+Q+H +++R   +  +   +
Sbjct: 553 SRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATI 612

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
             SL+++Y KCG +  A + F+           K ++ W+S++  Y + G F E + L++
Sbjct: 613 TGSLVDLYVKCGNLFSARKAFDQIKE-------KTMISWSSLILGYAQEGDFVEAMGLFK 665

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH--YSCLVDLLC 344
            +    ++ D     ++I   +    ++ G +    +V   KL  G E    + LVD+  
Sbjct: 666 RLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVV---KLPSGLETSVSNSLVDMYL 722

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
           + G +D+A K   EM  +      V  W  +++     GK  LGK A     ++  HN+
Sbjct: 723 KCGLVDEAEKCFAEMQLK-----DVISWTVMITG---YGKHGLGKKAVSIFNKMLRHNI 773



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 26/340 (7%)

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           SG   ++   + LID+Y K      A  +FD +P +N V   AL+SG+       G L L
Sbjct: 398 SGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSL 457

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIE 232
              M   G+  + FT S  L+AC  L+A E G Q+H +    C  +G ++ ++  +SL++
Sbjct: 458 FTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF----CLKIGFEMMVEVGNSLVD 513

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           MY KCG + +A +VF          + + ++ W +M+  Y   GY    +  +  M    
Sbjct: 514 MYSKCGRINEAEKVFRWM-------VGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAK 566

Query: 293 TK--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHD-YKLEPGPEHYSCLVDLLCRAGEL 349
            K  PDE    +++ ACS TG +  G +   ++V   +           LVDL  + G L
Sbjct: 567 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNL 626

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
             A K  +++ ++     ++  W +L+      G F +  +   K L+     +  +V+ 
Sbjct: 627 FSARKAFDQIKEK-----TMISWSSLILGYAQEGDF-VEAMGLFKRLQELSSQIDSFVLS 680

Query: 410 S--NLYAKFCMWDEIGQLRELMKE--KGLKKDVGCSWIEV 445
           S   ++A F +  +  Q++ L+ +   GL+  V  S +++
Sbjct: 681 SIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDM 720


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 216/430 (50%), Gaps = 45/430 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N ++S++ R G    AL     M   G   D   + S+++AS  + D  +GK  
Sbjct: 296 RNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVC 355

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAK----------------------------LLLIHDA 140
             +V ++G      +G+ +ID+Y K                             +   D 
Sbjct: 356 HGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDV 415

Query: 141 EL---MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
           E    +F++IP +N+V  N ++SG  +  L+   +EL R M   G+  D  T+  +  AC
Sbjct: 416 ESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASAC 475

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
             L A E  + VH Y+ +    +  D+ + ++L++M+ +CG    A+QVFN    R    
Sbjct: 476 GYLGAPELAKWVHTYIEKN--GIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTER---- 529

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              DV  WT+ +G     G  +    L+  ML+ G KPD V FV V++ACSH GQV+ G+
Sbjct: 530 ---DVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGL 586

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             F  M  D+ + P  EHY C+VDLL RAG L +A+ LI  M        +  +WG+LL+
Sbjct: 587 HIFSLM-EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSM----PMEPNDVVWGSLLA 641

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           AC      E+   AA++  EL P   G++V+LSN+YA    W ++ ++R  ++EKG++K 
Sbjct: 642 ACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKV 701

Query: 438 VGCSWIEVTG 447
            G S ++V G
Sbjct: 702 PGSSSVQVNG 711



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 172/388 (44%), Gaps = 43/388 (11%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +  Q+ L+  Y  C H  +   +    + ++ RN + +  +I  + R   P  A+  F  
Sbjct: 166 VFIQNCLIHFYAECGHMDHGHKV---FEGMSERNVVSWTSLICGYARGDRPKEAVSLFFE 222

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   GI   +  +   ++A   ++D   G++V A++ + G   +  + +AL+D+Y K   
Sbjct: 223 MVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGA 282

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           I  A+ +FDE   +N V  N +LS Y    L    L ++  M   G   D  T+ + + A
Sbjct: 283 IDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISA 342

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL------- 249
            A L    +G+  H Y+IR      + +   + +I+MY KCG    A +VF+L       
Sbjct: 343 SAQLVDLFYGKVCHGYVIRNGLEGWDSI--GNVIIDMYMKCGKPEMACRVFDLMSNKTVV 400

Query: 250 ------AGHRLEGEI-----------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
                 AG    G++            ++ V W +M+    +   F++ I+L+  M   G
Sbjct: 401 SWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEG 460

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG-P---EHYSCLVDLLCRAGE 348
            K D V  + + SAC + G  +L     +W VH Y  + G P      + LVD+  R G+
Sbjct: 461 IKADRVTMMGIASACGYLGAPELA----KW-VHTYIEKNGIPCDMRLNTALVDMFARCGD 515

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALL 376
              A ++ N+M +R      VS W A +
Sbjct: 516 PQSAMQVFNKMTER-----DVSAWTAAI 538



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 172/390 (44%), Gaps = 30/390 (7%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
            N +I  +   G    A+  +  M V G+  + Y     L+  T +     G QV   V 
Sbjct: 99  LNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVV 158

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G    VF+ + LI  YA+   +     +F+ +  +N V   +L+ GY         + 
Sbjct: 159 KMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVS 218

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M   G+     T+  ++ ACA L   + G +V AY+      L     M ++L++M
Sbjct: 219 LFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNK--VMVNALVDM 276

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A ++F+         +++++VL+ ++L  Y R G  +E + + + ML  G 
Sbjct: 277 YMKCGAIDAAKRLFDEC-------VDRNLVLYNTILSNYARQGLAREALAILDEMLQQGP 329

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGEL 349
           +PD V  ++ ISA +    +     ++  + H Y +  G E +    + ++D+  + G+ 
Sbjct: 330 RPDRVTMLSAISASAQLVDL-----FYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKP 384

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY--V 407
           + A ++ + M ++     +V  W +L +     G  E    +A +     P    ++   
Sbjct: 385 EMACRVFDLMSNK-----TVVSWNSLTAGFIRNGDVE----SAWEVFNQIPERNAVFWNT 435

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           M+S L  K    D I   RE M+ +G+K D
Sbjct: 436 MISGLVQKSLFEDAIELFRE-MQGEGIKAD 464


>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 225/429 (52%), Gaps = 19/429 (4%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           ++L+  Y  C ++ N+         L  R+   +N +I  +   G  + AL  + +M   
Sbjct: 43  AKLVGKYAQC-YESNIEDARKVFDCLPDRDVFVWNTIIQGYANLGPFMEALNIYEYMRCS 101

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G+  + Y     L A  ++KD + G+ +  HV K G    +FVG+AL+  YAK   I  +
Sbjct: 102 GVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGAS 161

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY----DHFTLSALLRA 196
             +FD I  K+ V  N+++SGY         L L   M  +  D     D  TL A+L A
Sbjct: 162 RRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPA 221

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA  +A + G  +H+Y+I+    L  D  + S LI MY  CGL+  A  VF+    R++ 
Sbjct: 222 CAQAAAIQEGLWIHSYVIKSGIEL--DAALGSGLIAMYANCGLLNSARDVFD----RID- 274

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
             +K++V+W +++  YG +G+  E +K++  ++ +G  PD V F+ ++SA SH G V  G
Sbjct: 275 --DKNIVVWNAIIRCYGMHGHADEALKMFSGLIDSGLHPDGVIFLCLLSAFSHAGMVAEG 332

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +E FE M  DY +E   EHY+ +VD+L RAG L +A + +  M  +        ++GALL
Sbjct: 333 MELFEKM-GDYGVEKSSEHYASVVDILGRAGFLHEAVEFVKNMPVQ----PGKDVYGALL 387

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
            AC      EL +  A+K   LDP N G Y++L  +Y     W+   +LR+ +KEK ++K
Sbjct: 388 GACRIHNNIELAEEIAEKLFVLDPDNAGRYIILVKMYEDAGKWENAARLRKALKEKNIRK 447

Query: 437 DVGCSWIEV 445
            +GCS IE+
Sbjct: 448 PLGCSAIEL 456



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 158/343 (46%), Gaps = 32/343 (9%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLL--IHDAELMFDEIPVKNSVCANALLSGYC 163
           K + A +   G+  + F+G+ L+  YA+     I DA  +FD +P ++    N ++ GY 
Sbjct: 24  KSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQGYA 83

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
               +   L +   M   G+  + +T   +L+AC  +   + G+ +H ++++   +L  D
Sbjct: 84  NLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHGLDL--D 141

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           +F+ ++L+  Y KC  +  + +VF++          KD+V W SM+  Y  NG   + + 
Sbjct: 142 LFVGNALVAFYAKCNEIGASRRVFDMISE-------KDIVTWNSMISGYAINGCADDALV 194

Query: 284 LYEAML-MNGTK---PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--- 336
           L+  ML + G     PD    V ++ AC+    ++ G+    W +H Y ++ G E     
Sbjct: 195 LFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGL----W-IHSYVIKSGIELDAAL 249

Query: 337 -SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQ 393
            S L+ +    G L+ A  + + + D+     ++ +W A++     H      L   +  
Sbjct: 250 GSGLIAMYANCGLLNSARDVFDRIDDK-----NIVVWNAIIRCYGMHGHADEALKMFSGL 304

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
               L P  V I++ L + ++   M  E  +L E M + G++K
Sbjct: 305 IDSGLHPDGV-IFLCLLSAFSHAGMVAEGMELFEKMGDYGVEK 346


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/413 (32%), Positives = 222/413 (53%), Gaps = 17/413 (4%)

Query: 38  TLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +LTN  K  +     N + +N +I  + R    + AL  F  M +           S L 
Sbjct: 406 SLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLG 465

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
            S+S+       Q+   + K G     F GSALID+Y+K   + DA L+F+EI  ++ V 
Sbjct: 466 LSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVV 525

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            NA+ SGY +       L+L + +    L  + FT +A++ A + +++   G+Q H  +I
Sbjct: 526 WNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVI 585

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           +    L +D F+ +SL++MY KCG + ++ + F+    R       D+  W SM+  Y +
Sbjct: 586 K--MGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQR-------DIACWNSMISTYAQ 636

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +G   + ++++E M+M G KP+ V FV ++SACSH G + LG  +FE M   + +EPG +
Sbjct: 637 HGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESM-SKFGIEPGID 695

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
           HY+C+V LL RAG++ +A + + +M  +     +  +W +LLSAC   G  ELG  AA+ 
Sbjct: 696 HYACMVSLLGRAGKIYEAKEFVKKMPIK----PAAVVWRSLLSACRVSGHVELGTYAAEM 751

Query: 395 ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A+  DP + G Y++LSN++A   MW  +  +RE M    + K+ G SWIEV  
Sbjct: 752 AISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNN 804



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 179/364 (49%), Gaps = 29/364 (7%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVI 58
           +HAH       ++ L   Q  + L  T       +   ++  K  +    RN + ++ ++
Sbjct: 73  IHAH-------IVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMV 125

Query: 59  SDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           S + ++G  + AL  F  FM       + Y L S + A T + +     Q+   V K G+
Sbjct: 126 SMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGF 185

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           +  V+VG++LID YAK   + +A L+FD + VK +V   A+++GY +       L+L   
Sbjct: 186 VQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQ 245

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M    +  D + +S++L AC+ L   E G+Q+H Y++R+  ++  DV + + +I+ Y KC
Sbjct: 246 MREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDM--DVSVVNGIIDFYLKC 303

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
             V    ++FN    RL   ++KDVV WT+M+    +N +  + + L+  M+  G KPD 
Sbjct: 304 HKVKTGRKLFN----RL---VDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDA 356

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAW 353
               +V+++C     ++ G +     VH Y ++   ++     + L+D+  +   L  A 
Sbjct: 357 FGCTSVLNSCGSLQALQKGRQ-----VHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNAR 411

Query: 354 KLIN 357
           K+ +
Sbjct: 412 KVFD 415



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 128/256 (50%), Gaps = 9/256 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  +  + +  +I+ + + G    +LK F+ M    ++ D Y + S L+A + ++    G
Sbjct: 215 LKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGG 274

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+  +V + G+   V V + +ID Y K   +     +F+ +  K+ V    +++G  + 
Sbjct: 275 KQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQN 334

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 ++L   M   G   D F  +++L +C  L A + GRQVHAY I+   N+ ND F
Sbjct: 335 SFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIK--VNIDNDDF 392

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +++ LI+MY KC  +T A +VF+L        IN  VV + +M+  Y R     E + L+
Sbjct: 393 VKNGLIDMYAKCDSLTNARKVFDLV-----AAIN--VVSYNAMIEGYSRQDKLVEALDLF 445

Query: 286 EAMLMNGTKPDEVAFV 301
             M ++ + P  + FV
Sbjct: 446 REMRLSLSPPTLLTFV 461



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 139/292 (47%), Gaps = 29/292 (9%)

Query: 96  STSVKDARFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           S ++  + + K++ AH+   G+    VF+ + L+  Y+K+ L  DA+ +FD +P +N V 
Sbjct: 61  SPNILTSHYYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVT 120

Query: 155 ANALLSGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
            ++++S Y +       L L  R M +     + + L++++RAC  L       Q+H ++
Sbjct: 121 WSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFV 180

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           ++       DV++ +SLI+ Y K G V +A  +F       +G   K  V WT+++  Y 
Sbjct: 181 VKG--GFVQDVYVGTSLIDFYAKRGYVDEARLIF-------DGLKVKTTVTWTAIIAGYA 231

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW--MVHDYKLEP 331
           + G  +  +KL+  M      PD     +V+SACS        +E+ E    +H Y L  
Sbjct: 232 KLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSM-------LEFLEGGKQIHGYVLRR 284

Query: 332 GPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           G +      + ++D   +  ++    KL N ++D+      V  W  +++ C
Sbjct: 285 GFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDK-----DVVSWTTMIAGC 331


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 135/429 (31%), Positives = 213/429 (49%), Gaps = 48/429 (11%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RNP+ +NV+I+ + R GS   A + F  M    +   T A+      + SV  A   
Sbjct: 215 MQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRT-AIMRGYLQNGSVDAAWKV 273

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE- 164
            +   H     W       + ++D + +   + DA  +F E+P ++ +  +A+L GY + 
Sbjct: 274 FKDMPHRDTVAW-------NTMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQ 326

Query: 165 -----AKLW---------------------AGGLELVRLMPALGLDYDHFTLSALLRACA 198
                A +W                      G L L+  M   GL  D  TLS ++  CA
Sbjct: 327 GDMDSANVWFPRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICA 386

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            L +   G+ VH + I+      +D  + SSLI MY KCGL+++A QVF L        +
Sbjct: 387 SLVSLGCGKMVHLWAIK--TGFEHDALVMSSLISMYSKCGLISEASQVFELI-------L 437

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            +D V W +M+  Y  +G   E +K+++ M   G +PD   F++++SAC+H G +  G  
Sbjct: 438 QRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCY 497

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +F  M  D+ L P  +HYSC+VDLL R+G + +A+        R       + W  L SA
Sbjct: 498 HFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTR----RIPSDHRTTAWETLFSA 553

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           C+  G+ +LG++ A+  L+  P + G+Y +LSN+YA   MW     +R  MKE+GLKK+ 
Sbjct: 554 CNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKET 613

Query: 439 GCSWIEVTG 447
           GCSWIE+ G
Sbjct: 614 GCSWIELKG 622



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 147/357 (41%), Gaps = 60/357 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N ++S + RNG    A + F  M     + D  +  + ++     K  R  +++
Sbjct: 125 RNVVSWNAMVSGYARNGMVKRARELFDMMP----WRDDVSWLTMISGYIKRKHVREAREL 180

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              +          V +AL+  Y +L  +  AE++F ++  +N V  N +++GY  A   
Sbjct: 181 FDSMPSP----PTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSM 236

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                L   MP    + D  + +A++R      + +   +V   M  +      D    +
Sbjct: 237 GIAQRLFDEMP----EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHR------DTVAWN 286

Query: 229 SLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI-----------NKDVVL 264
           ++++ + +   +  AL++F+             L G+  +G++           NKD + 
Sbjct: 287 TMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAIS 346

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +++  Y   G     + L   M+  G KPD+     VIS C+    +  G      MV
Sbjct: 347 WNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGK-----MV 397

Query: 325 HDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           H + ++ G EH     S L+ +  + G + +A ++   +L R         W A+++
Sbjct: 398 HLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQR-----DTVTWNAMIA 449



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 46/200 (23%)

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L+  Y +CG V +A ++FN    R       +VV W +M+  Y RNG  K   +L++ 
Sbjct: 100 AALLTGYARCGRVAEARELFNRIPDR-------NVVSWNAMVSGYARNGMVKRARELFDM 152

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK----------LEPG----- 332
           M       D+V+++T+IS       V+   E F+ M               +E G     
Sbjct: 153 MPWR----DDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAA 208

Query: 333 -----------PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
                      P  ++ ++    RAG +  A +L +EM ++   S +  M G L +   D
Sbjct: 209 EVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVD 268

Query: 382 CGKFELGKLAAQKALELDPH 401
                    AA K  +  PH
Sbjct: 269 ---------AAWKVFKDMPH 279


>gi|296083841|emb|CBI24229.3| unnamed protein product [Vitis vinifera]
          Length = 547

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 215/428 (50%), Gaps = 48/428 (11%)

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F     P  AL+ F  M V G   D+  L + +++   + D   GK++   + +SG+   
Sbjct: 86  FIEGLEPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALD 145

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            FV SAL+D+Y K   +  A+ +F++I  KN V  N++++GY         +EL R M  
Sbjct: 146 GFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDE 205

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+     TLS++L AC+     + G+ +H Y+IR    +  D+F+ SSLI++Y KCG +
Sbjct: 206 EGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRN--RVEADIFVNSSLIDLYFKCGNI 263

Query: 241 TKALQVFN-------------LAGHRLEGEINKDVVLWTSM--LGVYGRNGYFKEVIK-- 283
             A  VF              ++G+   G   + +V++T M   GV      F  V+   
Sbjct: 264 GSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPAC 323

Query: 284 --------------------------LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
                                     L+E M  +  KPD+V F+ ++SACSH G V  G 
Sbjct: 324 SQLAVLEKGKEIHNFIIESKLEINEVLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGC 383

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            YF  M+ +Y  +P  EHYSCL+DLL R G L +A++++    D       V +   L S
Sbjct: 384 YYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDI---REDVGLLSTLFS 440

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           ACH   K +LG+   +  +E DP +   Y++LSN+YA    WDE+ ++R  +KE GLKK+
Sbjct: 441 ACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKN 500

Query: 438 VGCSWIEV 445
            GCSWIEV
Sbjct: 501 PGCSWIEV 508



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 141/309 (45%), Gaps = 22/309 (7%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           +DT  L S L      K  + GK +   +   G  +++ +  +LI+LY    L   A+L+
Sbjct: 1   MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLV 60

Query: 144 FDEIPVKNSVCA-NALLSGYCEAKLWAGG------LELVRLMPALGLDYDHFTLSALLRA 196
           F  I     +   N L++   +  ++  G      LEL   M   G   D  TL+ ++ +
Sbjct: 61  FQTIENPLDITLWNGLMAACTKNFIFIEGLEPEKALELFEEMKVSGFKPDSVTLTTVISS 120

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA L   E G+++H  ++R    L  D F+ S+L++MYGKCG +  A +VF       E 
Sbjct: 121 CARLLDLERGKEIHMELVRSGFAL--DGFVSSALVDMYGKCGCLEMAKEVF-------EQ 171

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
              K+VV W SM+  Y   G  K  I+L+  M   G +P      +++ ACS +  ++LG
Sbjct: 172 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG 231

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
                +++ + ++E      S L+DL  + G +  A  +   M       ++V  W  ++
Sbjct: 232 KFIHGYIIRN-RVEADIFVNSSLIDLYFKCGNIGSAENVFQNM-----PKTNVVSWNVMI 285

Query: 377 SACHDCGKF 385
           S     G +
Sbjct: 286 SGYVKVGSY 294



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 145/326 (44%), Gaps = 25/326 (7%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  +N + +N +I+ +   G     ++ F  M   GI      L S L A +   + + G
Sbjct: 172 IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG 231

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K +  ++ ++   + +FV S+LIDLY K   I  AE +F  +P  N V  N ++SGY + 
Sbjct: 232 KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKV 291

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             +   L +   M   G+  D  T +++L AC+ L+  E G+++H ++I     +   +F
Sbjct: 292 GSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVLF 351

Query: 226 --MQSS--------LIEMYGKC---GLVTKALQVFN--LAGHRLEGEINKDVVLWTSMLG 270
             MQ S         + +   C   GLV +    FN  +A +  +  +      ++ ++ 
Sbjct: 352 EKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEH----YSCLID 407

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV-TVISACSHTGQVKLGIEYFEWMVHDYKL 329
           + GR G  +E    YE +       ++V  + T+ SAC    ++ LG +    ++   K 
Sbjct: 408 LLGRVGRLREA---YEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIE--KD 462

Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKL 355
              P  Y  L ++     + D+  K+
Sbjct: 463 PDDPSTYIILSNMYASVKKWDEVRKV 488



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           I   S L+  Y  C    N+G+  N  + +   N + +NV+IS + + GS L AL  F+ 
Sbjct: 247 IFVNSSLIDLYFKC---GNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTD 303

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
           M   G+  D     S L A + +     GK++   + +S
Sbjct: 304 MRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES 342


>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
 gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 244/433 (56%), Gaps = 22/433 (5%)

Query: 16  LIIFQSRLMLPYTTCRHKKNLGTLTNCLKF--LNPRNPLPFNVVISDFCRNGSPLYALKT 73
            I   + LM  Y +C     +G    C+ F  +  +N + +  +I+ +   G+   AL+ 
Sbjct: 146 FIYVDNALMDMYASC----GVGMRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQI 201

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M + G+ L+ +++  ++ A  S+    FG+Q+   V K G+ S + V ++++D+Y +
Sbjct: 202 FREMLLDGVALNPHSISIAVRACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCR 261

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              + +A   F+++  K+ +  N L++GY E         +   M + G   + FT ++L
Sbjct: 262 CGCLSEANKYFNDMTEKDLITWNTLIAGY-ERSDSIEPFFIFSQMESEGFSPNCFTFTSL 320

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           + ACA  +A + G+QVH  + R+   L  ++ + ++LI+MY KCG +  + + F+     
Sbjct: 321 VAACANAAALQCGQQVHGGIFRR--GLDGNLELANALIDMYAKCGNIIDSQKNFS----- 373

Query: 254 LEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
              E++  ++V WTSM+  YG +GY KE ++L++ M+ +G +PD+V F+ V+ ACSH G 
Sbjct: 374 ---EMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGL 430

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           V  G+ Y   M++DY ++P  E Y C+VDLL R G ++ A++LI  M       +  S+W
Sbjct: 431 VDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSM----PFMADESVW 486

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
           GALL AC       LGKLAA+KAL L P+ V  YVMLSN+YA    W E  ++R+LMK  
Sbjct: 487 GALLGACKAHNFSRLGKLAAKKALALRPNMVETYVMLSNIYAAEGKWGEAARMRKLMKRA 546

Query: 433 GLKKDVGCSWIEV 445
           G +K  G SWIEV
Sbjct: 547 GCRKVAGRSWIEV 559



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 118/242 (48%), Gaps = 11/242 (4%)

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           + + L+  Y +  L   A  +FDE+P ++ V    ++SGY     +     +   M   G
Sbjct: 46  LATDLLKSYFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNG 105

Query: 183 LDYDH-FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL-V 240
            D  + FT+S++L+AC G+     GR VH   I++    G  +++ ++L++MY  CG+ +
Sbjct: 106 NDPPNAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGF-IYVDNALMDMYASCGVGM 164

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A  VF    H ++    K+VV WT+++  Y   G     ++++  ML++G   +  + 
Sbjct: 165 RDACVVF----HDIK---EKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSI 217

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
              + AC+  G    G +    ++  +  E      + ++D+ CR G L +A K  N+M 
Sbjct: 218 SIAVRACASIGSQNFGRQIHTAVI-KHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMT 276

Query: 361 DR 362
           ++
Sbjct: 277 EK 278


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 224/420 (53%), Gaps = 14/420 (3%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS-PLYALKTFSFMHVHGIFLD 85
           Y  C    ++       + +   N + +  +I+ + ++G     A++ F  M    I  +
Sbjct: 101 YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPN 160

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
            ++  S L A  ++ D   G+QV ++  K G  S   VG++LI +YA+   + DA   FD
Sbjct: 161 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 220

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
            +  KN V  NA++ GY +         L   +   G+    FT ++LL   A + A   
Sbjct: 221 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 280

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G Q+H  +++      ++  + ++LI MY +CG +  A QVFN     +E   +++V+ W
Sbjct: 281 GEQIHGRLLKG--GYKSNQCICNALISMYSRCGNIEAAFQVFN----EME---DRNVISW 331

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           TSM+  + ++G+    ++++  ML  GTKP+E+ +V V+SACSH G +  G ++F  M  
Sbjct: 332 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYK 391

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           ++ + P  EHY+C+VDLL R+G L +A + IN M       +   +W  LL AC   G  
Sbjct: 392 EHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM----PLMADALVWRTLLGACRVHGNT 447

Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           ELG+ AA+  LE +P +   Y++LSNL+A    W ++ ++R+ MKE+ L K+ GCSWIEV
Sbjct: 448 ELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEV 507



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 164/337 (48%), Gaps = 27/337 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + + ++I+ F + G    A+  F  M + G   D +   S L+A T +     GKQ+
Sbjct: 19  RNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL 78

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEIPVKNSVCANALLSGYCEA 165
            + V + G    V VG +L+D+YAK      + D+  +F+++P  N +   A+++ Y ++
Sbjct: 79  HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQS 138

Query: 166 -KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            +     +EL   M +  +  +HF+ S++L+AC  LS    G QV++Y ++    + +  
Sbjct: 139 GECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK--LGIASVN 196

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + +SLI MY + G +  A + F++          K++V + +++  Y +N   +E   L
Sbjct: 197 CVGNSLISMYARSGRMEDARKAFDIL-------FEKNLVSYNAIVDGYAKNLKSEEAFLL 249

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LV 340
           +  +   G       F +++S  +  G +  G +     +H   L+ G +   C    L+
Sbjct: 250 FNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-----IHGRLLKGGYKSNQCICNALI 304

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            +  R G ++ A+++ NEM DR     +V  W ++++
Sbjct: 305 SMYSRCGNIEAAFQVFNEMEDR-----NVISWTSMIT 336



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 22/228 (9%)

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD++P +N V    +++ + +       ++L   M   G   D FT S++L AC  L  
Sbjct: 12  VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 71

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC---GLVTKALQVFNLAGHRLEGEIN 259
              G+Q+H+ +IR    L  DV +  SL++MY KC   G V  + +VF       E    
Sbjct: 72  LALGKQLHSRVIR--LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF-------EQMPE 122

Query: 260 KDVVLWTSMLGVYGRNGYF-KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            +V+ WT+++  Y ++G   KE I+L+  M+    +P+  +F +V+ AC +     L   
Sbjct: 123 HNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN-----LSDP 177

Query: 319 YFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDR 362
           Y    V+ Y ++ G    +C    L+ +  R+G ++ A K  + + ++
Sbjct: 178 YTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 225


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 220/403 (54%), Gaps = 19/403 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +++ + + G     L+TF  M+   +    + +   L+    + D   G+ +
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRII 259

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K G+ S V V ++LID+Y K   I DA  +F+ +  K+    N+++S + +    
Sbjct: 260 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH 319

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG------N 222
            G L L+  M   G+  D  T++ +L AC+ L+A   GR++H YMI     LG      +
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI--VSGLGKDGKDID 377

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV +++++I+MY KCG +  A  VF       E   NKDV  W  M+  YG +GY  E +
Sbjct: 378 DVLLKNAVIDMYAKCGSMRDAHLVF-------ERMSNKDVASWNIMIMGYGMHGYGNEAL 430

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +++  M     KPDEV FV V+SACSH G V  G  +   M   Y + P  EHY+C++D+
Sbjct: 431 EMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDM 490

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG+LD+A++L   M       ++  +W ALL+AC       L ++AAQ+  EL+P +
Sbjct: 491 LGRAGQLDEAYELALTMPIE----ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEH 546

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G YV++SN+Y     ++E+ ++R  M+++ ++K  GCSWIE+
Sbjct: 547 CGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIEL 589



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 181/396 (45%), Gaps = 26/396 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N   FN +IS F  NG P    + +  M   G+  D +    ++ A   V +    K++ 
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIH 159

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
             + K G    VF+GSAL++ Y K  L+  A++ F+E+P+++ V  NA+++GY +   + 
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             LE  R M    +    FT++ +L   A +     GR +H + ++   + G  V + +S
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSG--VAVSNS 277

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           LI+MYGKC  +  AL++F +          KD+  W S++ V+ + G     ++L + ML
Sbjct: 278 LIDMYGKCKCIEDALEIFEMMR-------EKDIFSWNSIVSVHEQCGDHDGTLRLLDRML 330

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL-----VDLLC 344
             G +PD V   TV+ ACSH   +  G E   +M+     + G +    L     +D+  
Sbjct: 331 GAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYA 390

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           + G +  A  +   M ++   S ++ + G      H  G   L   +    ++L P  V 
Sbjct: 391 KCGSMRDAHLVFERMSNKDVASWNIMIMG---YGMHGYGNEALEMFSRMCEVQLKPDEVT 447

Query: 405 IYVMLSNL-YAKFCMWDEIGQLRELMKEKGLKKDVG 439
              +LS   +A F     + Q R  + +   K DV 
Sbjct: 448 FVGVLSACSHAGF-----VSQGRNFLVQMKSKYDVA 478



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 141/298 (47%), Gaps = 27/298 (9%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           +SL AS   K+   GK++ +++  +G+L+S    ++LI++Y+K   ++ A  +F +   +
Sbjct: 42  ASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHE 101

Query: 151 NSVCA-NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
            +V A NA++SG+        G E  + M   G+  D FT    ++AC  L   E  +++
Sbjct: 102 INVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVLEI-KKI 158

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H  + +    L  DVF+ S+L+  Y K GL+  A   F       E    +DVVLW +M+
Sbjct: 159 HGLLFKFGLEL--DVFIGSALVNCYLKFGLMEHAQVAF-------EELPIRDVVLWNAMV 209

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
             Y + G F+ V++ +  M      P       V+S  +  G +  G      ++H + +
Sbjct: 210 NGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNG-----RIIHGFAM 264

Query: 330 EPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           + G +      + L+D+  +   ++ A ++   M ++      +  W +++S    CG
Sbjct: 265 KMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREK-----DIFSWNSIVSVHEQCG 317



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 17/203 (8%)

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
           Y+  T  A L+A A       G+++H+YM+       N     +SLI MY KC  +  AL
Sbjct: 35  YNLTTCIASLQASAHHKNLSKGKEIHSYMLIN--GFLNSPLSITSLINMYSKCNQMNFAL 92

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            +F+   H    EIN  V  + +++  +  NG+ +E  + Y+ M   G  PD+  F   I
Sbjct: 93  SIFSDPTH----EIN--VFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAI 146

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
            AC       L I+    ++  + LE      S LV+   + G ++ A     E+  R  
Sbjct: 147 KACLDV----LEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR-- 200

Query: 365 GSSSVSMWGALLSACHDCGKFEL 387
               V +W A+++     G+FE+
Sbjct: 201 ---DVVLWNAMVNGYAQIGQFEM 220


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 229/431 (53%), Gaps = 28/431 (6%)

Query: 20  QSRLMLPYTTCRHKKNLGTLTNCLKFLN----PRNPLPFNVVISDFCRNGSPLYALKTFS 75
           ++ LM+ Y+ C       ++    K  +      N + +  +I  F +N +   A+  F 
Sbjct: 344 RTALMVTYSKC------SSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFC 397

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            M   G+  + +   + L      K +    Q+ A + K+ +     V +AL+D Y K  
Sbjct: 398 QMSREGVRPNHFTYSTVLAG----KPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTG 453

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
            + ++  +F  IP K+ V  +A+L+G  + +     +E+   +   G+  + +T S+++ 
Sbjct: 454 NVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVIN 513

Query: 196 ACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
           AC+  +A  E G+Q+HA  ++      N + + S+L+ MY K G +  A +VF     R 
Sbjct: 514 ACSSSAATVEHGKQIHATAVKS--GKSNALCVSSALLTMYSKKGNIESAEKVFTRQEER- 570

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                 D+V W SM+  YG++G  K+ +++++ M   G   D+V F+ V++AC+H G V+
Sbjct: 571 ------DIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVE 624

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G +YF  M+ DY ++   EHYSC+VDL  RAG  DKA  +IN M       +S ++W  
Sbjct: 625 EGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGM----PFPASPTIWRT 680

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LL+AC      ELGKLAA+K + L P++   YV+LSN++A    W+E   +R+LM E+ +
Sbjct: 681 LLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKV 740

Query: 435 KKDVGCSWIEV 445
           KK+ GCSWIE+
Sbjct: 741 KKEAGCSWIEI 751



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 154/334 (46%), Gaps = 36/334 (10%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++ DF RN     AL  F  +H  G+ +D   L  +L     + D   G+QV     
Sbjct: 72  YNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSL 131

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           KSG+L  V VG++L+D+Y K     D   +FDE+ +KN V   +LLSGY    L    + 
Sbjct: 132 KSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIH 191

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L+  M   G++ + FT + +L A A  S  E G QVHA +++         F+ ++LI M
Sbjct: 192 LINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEF--TTFVCNALICM 249

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K  +V  A  VF       +  + +D V W  M+G Y   G++ E  +++  M + G 
Sbjct: 250 YLKSEMVGDAEAVF-------DSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 294 KPDEVAFVTVISACS-----------HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           K     F T +  CS           H G VK G E+      D +        + L+  
Sbjct: 303 KLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEF----AQDIR--------TALMVT 350

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             +   +D+A+KL + M D  H   +V  W A++
Sbjct: 351 YSKCSSVDEAFKLFS-MADAAH---NVVTWTAMI 380



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 151/330 (45%), Gaps = 18/330 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +  ++S + RNG     +   + M + G+  + +   + L A         G QV
Sbjct: 168 KNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQV 227

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A + K+G+  + FV +ALI +Y K  ++ DAE +FD + V++SV  N ++ GY     +
Sbjct: 228 HAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFY 287

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             G ++   M   G+          L+ C+      F +Q+H  +++       D+  ++
Sbjct: 288 LEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDI--RT 345

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+  Y KC  V +A ++F++A      +   +VV WT+M+G + +N   ++ + L+  M
Sbjct: 346 ALMVTYSKCSSVDEAFKLFSMA------DAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQM 399

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G +P+   + TV++     G+    +      +     E  P   + L+D   + G 
Sbjct: 400 SREGVRPNHFTYSTVLA-----GKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGN 454

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + ++ ++   +      +  +  W A+L+ 
Sbjct: 455 VVESARVFYSI-----PAKDIVAWSAMLTG 479



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FDE P+K+    N LL  +         L L + + + GL  D  TLS  L+ C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L     GRQVH   ++       DV + +SL++MY K         +F+  G        
Sbjct: 117 LFDQVVGRQVHCQSLKS--GFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMG-------I 167

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           K+VV WTS+L  Y RNG   EVI L   M M G  P+   F TV+ A +    ++ G++ 
Sbjct: 168 KNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQV 227

Query: 320 FEWMVHD 326
              +V +
Sbjct: 228 HAMIVKN 234


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 228/430 (53%), Gaps = 44/430 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + ++ +I+ F +N     A++TF  MH  G+ +D     S+L+A  ++     GK +
Sbjct: 204 KDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLI 263

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAK---------------LL----------------LI 137
            +   K G  S + + +ALI +Y+K               LL                L+
Sbjct: 264 HSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLV 323

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
            +A+ +FD +P K+ V  ++++SGY +  L+   L L + M   G   D  TL +++ AC
Sbjct: 324 DNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISAC 383

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A L+A E G+ VHAY+ R    L  +V + ++LI+MY KCG V  AL+VF        G 
Sbjct: 384 ARLAALEQGKWVHAYIKRN--GLTINVILGTTLIDMYMKCGCVETALEVF-------YGM 434

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
           I K +  W +++     NG  +  + ++  M      P+E+ F+ V+ AC H G V  G 
Sbjct: 435 IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQ 494

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            +F  M+HD+K++P  +HY C+VDLL RAG+L +A     E+L+R   +  V+ WGALL 
Sbjct: 495 HHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEA----EELLNRMPMTPDVATWGALLG 550

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           AC   G  E+G+   +K +EL P + G +V+LSN+YA    WD++ ++R +M +  + K 
Sbjct: 551 ACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKI 610

Query: 438 VGCSWIEVTG 447
            GCS IE  G
Sbjct: 611 PGCSMIEANG 620



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 165/350 (47%), Gaps = 62/350 (17%)

Query: 75  SFMHVHGIFLDTYALCSSLTAS------TSVKDARFGKQVQA------------HVTKSG 116
           S ++V    ++ +++CS++T +      +SV D+     + A            H+    
Sbjct: 111 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 170

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
              S+   +++I L+    L+ +A  +FDE+  K+ V  +AL++ + + +++   +    
Sbjct: 171 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 230

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF--MQSSLIEMY 234
            M  +G+  D     + L ACA L     G+ +H+  ++    +G + +  +Q++LI MY
Sbjct: 231 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLK----IGTESYINLQNALIYMY 286

Query: 235 GKCGLVTKALQVFN-------------LAGHR-----------LEGEINKDVVLWTSMLG 270
            KCG +  A ++F+             ++G+             +    KDVV W+SM+ 
Sbjct: 287 SKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMIS 346

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y +N  F E + L++ M M+G KPDE   V+VISAC+    ++ G    +W VH Y   
Sbjct: 347 GYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG----KW-VHAYIKR 401

Query: 331 PGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            G        + L+D+  + G ++ A ++   M+++G     +S W AL+
Sbjct: 402 NGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKG-----ISTWNALI 446



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 173/401 (43%), Gaps = 69/401 (17%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
             F+   N   +N++I  + +  SP +A   +  M  + +  D Y     + A +  +  
Sbjct: 35  FNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSE 94

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
              KQV  HV K G+ S V+V + LI+ ++    + DA  +F+E  V +SV  N++L+GY
Sbjct: 95  WEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGY 154

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            E                                   +   E  + ++  M  +      
Sbjct: 155 IE-----------------------------------IGNVEEAKHIYHQMPER------ 173

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            +   +S+I ++G  GLV +A ++F       +  + KD+V W++++  + +N  ++E I
Sbjct: 174 SIIASNSMIVLFGMRGLVVEACKLF-------DEMLEKDMVTWSALIACFQQNEMYEEAI 226

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
           + +  M   G   DEV  V+ +SAC++   V +G      ++H   L+ G E Y    + 
Sbjct: 227 RTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGK-----LIHSLSLKIGTESYINLQNA 281

Query: 339 LVDLLCRAGELDKAWKLINE--MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
           L+ +  + G++  A KL +E  +LD       +  W +++S    C   +  K       
Sbjct: 282 LIYMYSKCGDIMVARKLFDEAYLLD-------LISWNSMISGYLKCNLVDNAKAIFDSMP 334

Query: 397 ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           E D   V    M+S  YA+  ++DE   L + M+  G K D
Sbjct: 335 EKDV--VSWSSMISG-YAQNDLFDETLALFQEMQMSGFKPD 372


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 217/400 (54%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT-YALCSSLTASTSVKDARFGKQ 107
           RN + ++ +I  +  +     AL+ F  M +      T   L S L A   + D   G++
Sbjct: 274 RNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRK 333

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +  ++ K G +  + +G+ L+ +YAK  +I DA   FD +  K+SV  +A++SG  +   
Sbjct: 334 LHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGN 393

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
            A  L + R+M   G+D D  T+  +L AC+ L+A + G   H Y+I +      D  + 
Sbjct: 394 AAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR--GFATDTLIC 451

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++LI+MY KCG ++ A +VFN    R++     D+V W +M+  YG +G   E + L+  
Sbjct: 452 NALIDMYSKCGKISFAREVFN----RMD---RHDIVSWNAMIIGYGIHGLGMEALGLFHD 504

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           +L  G KPD++ F+ ++S+CSH+G V  G  +F+ M  D+ + P  EH  C+VD+L RAG
Sbjct: 505 LLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAG 564

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            +D+A   I  M         V +W ALLSAC      ELG+  ++K   L P + G +V
Sbjct: 565 LIDEAHHFIRNM----PFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFV 620

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+Y+    WD+   +R   K+ GLKK  GCSWIE+ G
Sbjct: 621 LLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEING 660



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 177/375 (47%), Gaps = 30/375 (8%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+ + +N +I+     G    A++    M   GI  ++  +   L      K    G
Sbjct: 170 MSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K +  +  +  + + V VG+ L+D+YAK   +  A  +FD + V+N V  +A++ GY  +
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXS 289

Query: 166 KLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN-- 222
                 LEL  +++    +D    TL ++LRACA L+    GR++H Y+I+    LG   
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK----LGXVL 345

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D+ + ++L+ MY KCG++  A++ F+           KD V +++++    +NG     +
Sbjct: 346 DILLGNTLLSMYAKCGVIDDAIRFFDXMN-------PKDSVSFSAIVSGCVQNGNAAVAL 398

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHYSC-- 338
            ++  M ++G  PD    + V+ ACSH   ++ G     +  H Y +  G   +   C  
Sbjct: 399 SIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG-----FCSHGYLIVRGFATDTLICNA 453

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL--SACHDCGKFELGKLAAQKAL 396
           L+D+  + G++  A ++ N M DR      +  W A++     H  G   LG      AL
Sbjct: 454 LIDMYSKCGKISFAREVFNRM-DR----HDIVSWNAMIIGYGIHGLGMEALGLFHDLLAL 508

Query: 397 ELDPHNVGIYVMLSN 411
            L P ++    +LS+
Sbjct: 509 GLKPDDITFICLLSS 523



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 160/337 (47%), Gaps = 26/337 (7%)

Query: 50  NP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           NP  + +N +I  +  NG    A+  +  M   G+  + Y     L A + +     G +
Sbjct: 71  NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + +H    G  S VFV +AL+D YAK  ++ +A+ +F  +  ++ V  NA+++G     L
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               ++L+  M   G+  +  T+  +L       A   G+ +H Y +R+  +  N V + 
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR--SFDNGVVVG 248

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           + L++MY KC  +  A ++F++ G R E       V W++M+G Y  +   KE ++L++ 
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNE-------VSWSAMIGGYVXSDCMKEALELFDQ 301

Query: 288 MLM-NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDL 342
           M++ +   P  V   +V+ AC+    +  G +     +H Y ++ G        + L+ +
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRGRK-----LHCYIIKLGXVLDILLGNTLLSM 356

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
             + G +D A +  + M    +   SVS + A++S C
Sbjct: 357 YAKCGVIDDAIRFFDXM----NPKDSVS-FSAIVSGC 388



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 10/312 (3%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L A    K     K++  H  K+   +   V   L  LY     +  A  +FDEIP  + 
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           +  N ++  Y     + G ++L   M  LG+  + +T   +L+AC+GL A E G ++H++
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSH 134

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
              K   L +DVF+ ++L++ Y KCG++ +A ++F+   HR       DVV W +M+   
Sbjct: 135 A--KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-------DVVAWNAMIAGC 185

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
              G   + ++L   M   G  P+    V V+        +  G     + V     + G
Sbjct: 186 SLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVR-RSFDNG 244

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
               + L+D+  +   L  A K+ + M  R   S S  + G + S C         ++  
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMIL 304

Query: 393 QKALELDPHNVG 404
           + A++  P  +G
Sbjct: 305 KDAMDPTPVTLG 316



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 16/256 (6%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKT 73
           I+  + L+  Y  C      G + + ++F   +NP++ + F+ ++S   +NG+   AL  
Sbjct: 347 ILLGNTLLSMYAKC------GVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSI 400

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M + GI  D   +   L A + +   + G     ++   G+ +   + +ALID+Y+K
Sbjct: 401 FRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSK 460

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              I  A  +F+ +   + V  NA++ GY    L    L L   + ALGL  D  T   L
Sbjct: 461 CGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICL 520

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L +C+       GR     M R   ++   +     ++++ G+ GL+ +A          
Sbjct: 521 LSSCSHSGLVMEGRLWFDAMSRD-FSIVPRMEHCICMVDILGRAGLIDEAHHFIR----- 574

Query: 254 LEGEINKDVVLWTSML 269
                  DV +W+++L
Sbjct: 575 -NMPFEPDVRIWSALL 589


>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
          Length = 591

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 205/361 (56%), Gaps = 17/361 (4%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           TY+ C+ L  + S+  AR G+QV   V K+G+ + + V S L+D+Y+K  L+ DA  +F 
Sbjct: 225 TYS-CTLLACARSLA-AREGQQVHGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFR 282

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
                + V    +L G+ +  L     EL   M   G + D  T+S +L A    +    
Sbjct: 283 SCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPFAL 342

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVL 264
           G+Q+HA +I++C   G + ++ + L+ MY KCG + +++QVF+        E+ +K+ V 
Sbjct: 343 GKQIHALVIKRC--FGVNTYVCNGLVNMYSKCGELRESVQVFD--------EMPSKNSVS 392

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W S++  + R+G+  EV +L+E+M  +G KP +V F++++ ACSH G  K G+E    M 
Sbjct: 393 WNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMS 452

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
             Y + P  EHY+C+VD+L RAG LD A   I +    G  + S  +W AL+ AC   G 
Sbjct: 453 SQYGVLPRMEHYACVVDMLGRAGLLDDAKSFIED----GPFTDSALLWQALMGACSFHGN 508

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            E+GK AA+K L LDP     YV+LSN+Y+    WD+  ++ + M E GL+KD G SWIE
Sbjct: 509 SEVGKHAAEKLLLLDPSCTAAYVLLSNIYSSEGRWDDRAKVMKRMSEMGLRKDTGKSWIE 568

Query: 445 V 445
           +
Sbjct: 569 L 569



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 132/273 (48%), Gaps = 20/273 (7%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V   V   G+ + V VG+AL+  Y +      AE +F  +  KN +   A++SG   A+L
Sbjct: 145 VHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAEL 204

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +     L   M    +D ++ T S  L ACA   AA  G+QVH  +++       D+ ++
Sbjct: 205 YKESFSLFGQMIRT-VDANNATYSCTLLACARSLAAREGQQVHGLVVK--AGFEADLHVE 261

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S L+++Y KCGL+  AL VF             D V  T +L  + +NG  ++  +L+  
Sbjct: 262 SGLMDVYSKCGLMEDALTVFRSCRE-------PDEVFLTVILVGFAQNGLEEKAFELFAE 314

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVDLLCR 345
           M+  G + DE    TV+ A   +    LG +    ++   K   G   Y C  LV++  +
Sbjct: 315 MVGAGNEIDENTVSTVLGAFGASAPFALGKQIHALVI---KRCFGVNTYVCNGLVNMYSK 371

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            GEL ++ ++ +EM  +    +SVS W ++++A
Sbjct: 372 CGELRESVQVFDEMPSK----NSVS-WNSIIAA 399



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 118/255 (46%), Gaps = 16/255 (6%)

Query: 20  QSRLMLPYTTCRHKKNLGTLTNCLK-FLNPRNP--LPFNVVISDFCRNGSPLYALKTFSF 76
           +S LM  Y+ C      G + + L  F + R P  +   V++  F +NG    A + F+ 
Sbjct: 261 ESGLMDVYSKC------GLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAE 314

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G  +D   + + L A  +      GKQ+ A V K  +  + +V + L+++Y+K   
Sbjct: 315 MVGAGNEIDENTVSTVLGAFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGE 374

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + ++  +FDE+P KNSV  N++++ +      +   +L   M A G      T  +LL A
Sbjct: 375 LRESVQVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHA 434

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+ + +A+ G ++   M  +   L   +   + +++M G+ GL+  A           +G
Sbjct: 435 CSHVGSAKKGLEILNSMSSQYGVLPR-MEHYACVVDMLGRAGLLDDAKSFIE------DG 487

Query: 257 EINKDVVLWTSMLGV 271
                 +LW +++G 
Sbjct: 488 PFTDSALLWQALMGA 502



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 124/285 (43%), Gaps = 35/285 (12%)

Query: 86  TYALCSSLTASTSVK-DARFGKQVQAHVTKSG----------WLSSVFVG-SALIDLYAK 133
            YA  S L AS   + D R G  + A V K+           WL  V V  +AL+ +YA+
Sbjct: 10  NYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNALVSMYAR 69

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG-GLELVRLM-PALGLDYDHFTLS 191
                DA  +FDE+ V+++V  N+L++    A   AG  L L R M  +     D  T +
Sbjct: 70  CGRREDAARVFDEMRVRDAVSWNSLIA----ASRGAGDALALFRRMLRSDARACDRATFT 125

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
            +L  CA   AA        + +   C    +V + ++L+  Y +CG    A +VF+   
Sbjct: 126 TVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFH--- 182

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
               G   K+V+ WT+M+    R   +KE   L+  M+      +   +   + AC+ + 
Sbjct: 183 ----GMAEKNVITWTAMISGMARAELYKESFSLFGQMIRT-VDANNATYSCTLLACARSL 237

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKA 352
             + G +     VH   ++ G E      S L+D+  + G ++ A
Sbjct: 238 AAREGQQ-----VHGLVVKAGFEADLHVESGLMDVYSKCGLMEDA 277


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 135/429 (31%), Positives = 211/429 (49%), Gaps = 48/429 (11%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RNP+ +NV+I+ + R GS   A + F  M    +   T A+      + SV  A   
Sbjct: 215 MQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRT-AIMRGYLQNGSVDAAWKV 273

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE- 164
            +   H     W       + ++D + +   + DA  +F E+P ++ +  NA+L GY + 
Sbjct: 274 FKDMPHRDTVAW-------NTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQ 326

Query: 165 -----AKLW---------------------AGGLELVRLMPALGLDYDHFTLSALLRACA 198
                A  W                      G L L+  M   GL  D  TLS ++  CA
Sbjct: 327 GDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICA 386

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            L +   G+ VH + I+      +D  + SSLI MY KCGL+++A QVF L        +
Sbjct: 387 SLVSLGCGKMVHLWAIK--TGFEHDALVMSSLISMYSKCGLISEASQVFELI-------L 437

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            +D V W +M+  Y  +G   E +K+++ M   G +PD   F++++SAC+H G +  G  
Sbjct: 438 QRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCY 497

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +F  M  D+ L P  +HYSC+VDLL R+G + +A+        R       + W  L S 
Sbjct: 498 HFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTR----RIPSDHRTTAWETLFSV 553

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           C+  G+ +LG++ A+  L+  P + G+Y +LSN+YA   MW     +R  MKE+GLKK+ 
Sbjct: 554 CNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKET 613

Query: 439 GCSWIEVTG 447
           GCSWIE+ G
Sbjct: 614 GCSWIELKG 622



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 147/357 (41%), Gaps = 60/357 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N ++S + RNG    A + F  M     + D  +  + ++     K  R  +++
Sbjct: 125 RNVVSWNAMVSGYARNGMVKRARELFDMMP----WRDDVSWLTMISGYIKRKHVREAREL 180

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              +          V +AL+  Y +L  +  AE++F ++  +N V  N +++GY  A   
Sbjct: 181 FDSMPSP----PTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSM 236

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                L   MP    + D  + +A++R      + +   +V   M  +      D    +
Sbjct: 237 GIAQRLFDEMP----EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHR------DTVAWN 286

Query: 229 SLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI-----------NKDVVL 264
           ++++ + +   +  AL++F+             L G+  +G++           NKD + 
Sbjct: 287 TMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAIS 346

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +++  Y   G     + L   M+  G KPD+     VIS C+    +  G      MV
Sbjct: 347 WNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGK-----MV 397

Query: 325 HDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           H + ++ G EH     S L+ +  + G + +A ++   +L R         W A+++
Sbjct: 398 HLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQR-----DTVTWNAMIA 449



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 46/200 (23%)

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L+  Y +CG V +A ++FN    R       +VV W +M+  Y RNG  K   +L++ 
Sbjct: 100 AALLTGYARCGRVAEARELFNRIPDR-------NVVSWNAMVSGYARNGMVKRARELFDM 152

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK----------LEPG----- 332
           M       D+V+++T+IS       V+   E F+ M               +E G     
Sbjct: 153 MPWR----DDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAA 208

Query: 333 -----------PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
                      P  ++ ++    RAG +  A +L +EM ++   S +  M G L +   D
Sbjct: 209 EVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVD 268

Query: 382 CGKFELGKLAAQKALELDPH 401
                    AA K  +  PH
Sbjct: 269 ---------AAWKVFKDMPH 279


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 202/370 (54%), Gaps = 18/370 (4%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   GI  + +   + LTA   V       ++ A   K  ++ S  VG+AL+D Y K   
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPF----EMHAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + +A  +F  I  K+ V  +A++ GY +     G + +   M    +  + +T S ++ A
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 197 CAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
           CA  +A  E G+Q+HA+ I+   N  N + + S+L+ MY K G +  A +VF     R  
Sbjct: 117 CAAPTAGVEQGKQLHAWSIKSRFN--NALCVSSALLTMYSKRGDIESAFEVFKRQRER-- 172

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
                D+V W S++  Y ++GY ++ ++++E M     + D V F+ VISAC+HTG    
Sbjct: 173 -----DLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANE 227

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G  YF+ MV D+ +EP  EHYSC+VDL  RAG L KA ++INEM       +S ++W  L
Sbjct: 228 GQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEM----PFPASANVWRTL 283

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L+A       E+GKLAA K + L P N   YV+L+N+YA    W E  ++R+LM+EK +K
Sbjct: 284 LAASCIHRNLEVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVK 343

Query: 436 KDVGCSWIEV 445
           K  G SWIEV
Sbjct: 344 KVAGYSWIEV 353


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 129/399 (32%), Positives = 212/399 (53%), Gaps = 14/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R    +N +I+ +   G    AL+ F  M   G   +   + +  +      D   GK  
Sbjct: 180 RTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWA 239

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           ++ + +   L ++ V +AL+++Y K   I +A   FD +  ++ V  + +++GY +    
Sbjct: 240 RSLIAEQD-LQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRP 298

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL   M A     +  TL  +L ACA L + E G Q+ +++  +  NL    ++ S
Sbjct: 299 HESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQ--NLPLTSYLGS 356

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG V +A  VFN   H++       V+ W SM+     NG+ ++ I LY+ M
Sbjct: 357 ALIDMYTKCGHVGRARSVFNRMEHKV-------VITWNSMMRGLALNGFAQDAITLYKEM 409

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                +P+E+ FV +++AC+H G V  G+ +F+ M   + + P  EH +C+VDLLC++G 
Sbjct: 410 TEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGR 469

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A+K I +M        +  +W  LLSAC      EL KLAA K L L+P N  IYV+
Sbjct: 470 LREAYKFICDM----EVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVL 525

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSN+YA   +W ++ ++R+LM+ K ++K    SWIE+ G
Sbjct: 526 LSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDG 564



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 158/345 (45%), Gaps = 45/345 (13%)

Query: 48  PRNPLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           PR P P     +IS   R  S    L  FS +H  G  +    +   + +   +  +R G
Sbjct: 46  PR-PTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQG 104

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQV  H    G L  +FV +AL+D YAK   +  A  +FDE+PVK+ +  N L++GY ++
Sbjct: 105 KQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKS 164

Query: 166 -------KLWAG------------------------GLELVRLMPALGLDYDHFTLSALL 194
                  +L+ G                         L L R M + G   +  T++ + 
Sbjct: 165 GDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMF 224

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
             CA     E G+   + +  +  +L N + + ++L+EMY KC  + +A + F+    R+
Sbjct: 225 SICAKTGDLETGKWARSLIAEQ--DLQN-MIVHTALMEMYVKCRAIDEARREFD----RM 277

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
           +    +DVV W++M+  Y +NG   E ++L+E M     KP+EV  V V+SAC+  G  +
Sbjct: 278 Q---QRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDE 334

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           LG +     V    L       S L+D+  + G + +A  + N M
Sbjct: 335 LGGQIGS-HVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRM 378



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 137/319 (42%), Gaps = 35/319 (10%)

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           L+ +     L DL +       A  +FD +P         L+S           L+    
Sbjct: 16  LAGLLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSS 75

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           +   G D     +  ++++CA L+A+  G+QVH + I +   L  D+F+Q++L++ Y K 
Sbjct: 76  LHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVR--GLLGDIFVQTALVDFYAKN 133

Query: 238 GLVTKALQVFN-----------------------LAGHRL-EGEINKDVVLWTSMLGVYG 273
           G +  A++VF+                       +   RL +G + +    W SM+  Y 
Sbjct: 134 GDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYA 193

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
             G ++E ++L+  ML  G +P+ +   T+ S C+ TG ++ G ++   ++ +  L+   
Sbjct: 194 HGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETG-KWARSLIAEQDLQNMI 252

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF--ELGKLA 391
            H + L+++  +   +D+A +  + M  R      V  W  +++     G+    L    
Sbjct: 253 VH-TALMEMYVKCRAIDEARREFDRMQQR-----DVVAWSTMIAGYAQNGRPHESLELFE 306

Query: 392 AQKALELDPHNVGIYVMLS 410
             KA    P+ V +  +LS
Sbjct: 307 RMKATSCKPNEVTLVGVLS 325



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 106/254 (41%), Gaps = 10/254 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I  + LM  Y  CR    +         +  R+ + ++ +I+ + +NG P  +L+ F  
Sbjct: 251 MIVHTALMEMYVKCR---AIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFER 307

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M       +   L   L+A   +     G Q+ +HV       + ++GSALID+Y K   
Sbjct: 308 MKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGH 367

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A  +F+ +  K  +  N+++ G          + L + M    +  +  T  ALL A
Sbjct: 368 VGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTA 427

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C      + G      M +   ++   V   + ++++  K G + +A +         + 
Sbjct: 428 CTHAGLVDQGMSFFKEM-KTIHHVSPQVEHCACIVDLLCKSGRLREAYKFI------CDM 480

Query: 257 EINKDVVLWTSMLG 270
           E+  + V+W+++L 
Sbjct: 481 EVEPNAVIWSTLLS 494


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/417 (32%), Positives = 220/417 (52%), Gaps = 21/417 (5%)

Query: 35  NLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALC 90
           N+G +    K  +    R+   +N VIS +   G  + AL  F  M  +     + + L 
Sbjct: 141 NVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLS 200

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S+L A+ ++   R GK++  ++ +SG      V +AL+DLY K   +++A  +FD++  K
Sbjct: 201 SALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADK 260

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V    ++    E      G  L R +   G+  + +T + +L ACA L+A + G++VH
Sbjct: 261 DIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVH 320

Query: 211 AYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
            YM R    +G D   F  S+L+ +Y KCG    A +VFN            D+V WTS+
Sbjct: 321 GYMTR----VGYDPFSFAASALVHVYSKCGNTETARRVFNQMPR-------PDLVSWTSL 369

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y +NG     ++ +E++L +GTKPDE+ FV V+SAC+H G V +G+EYF  +   + 
Sbjct: 370 IVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHG 429

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           L    +HY+C++DLL R+G   +A  +I+ M  +        +W +LL  C   G  EL 
Sbjct: 430 LVHTADHYACVIDLLARSGRFKEAENIIDNMPMK----PDKFLWASLLGGCRIHGNIELA 485

Query: 389 KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           + AA+   EL+P N   Y+ LSN+YA   +W E  ++R  M  +G+ K  G SWIE+
Sbjct: 486 ERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEI 542



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 164/344 (47%), Gaps = 58/344 (16%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAS-TSVKDARFGKQVQAHV 112
           F  +I  FC+      A+      ++H I   +  L S+L A+    +    GK+V AH 
Sbjct: 35  FEEIIELFCQQNRLKEAVD-----YLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHT 89

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA----------------- 155
             S ++  + + + LI +YAK   + DA+++FDEIP K+ +C+                 
Sbjct: 90  KASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKD-LCSWNTMISGYANVGRIEQA 148

Query: 156 ---------------NALLSGYCEAKLWAGGLELVRLMPA-LGLDYDHFTLSALLRACAG 199
                          NA++SGY     +   L+L R+M      + + FTLS+ L A A 
Sbjct: 149 RKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAA 208

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           +S+   G+++H Y+IR    L  D  + ++L+++YGKCG + +A  +F+          +
Sbjct: 209 ISSLRRGKEIHGYLIRSGLEL--DEVVWTALLDLYGKCGSLNEARGIFDQMA-------D 259

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           KD+V WT+M+     +G  KE   L+  ++ +G +P+E  F  V++AC+     ++G E 
Sbjct: 260 KDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKE- 318

Query: 320 FEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEM 359
               VH Y    G + +    S LV +  + G  + A ++ N+M
Sbjct: 319 ----VHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQM 358


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 226/453 (49%), Gaps = 41/453 (9%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++  + ++  YT+     +  TL N +     R+   +N++++   R+G+   A K F  
Sbjct: 129 VVSWNTMLEAYTSSGRVGDACTLFNGMPV---RDAGSWNILLAALVRSGNIDKARKLFDR 185

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDAR--FGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
           M    +   T  + + +  S SV +AR  F    + +V     + S +  + +ID    L
Sbjct: 186 MPERNVMAWT-TMVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARNHMIDEAHDL 244

Query: 135 LL----------------------IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
            +                      +  A+ +FD++P +N V    +++GY ++      L
Sbjct: 245 FMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETAL 304

Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           +L   M   G+  +  T    + AC+ L+    G+QVH  + +       D F++S+L+ 
Sbjct: 305 QLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQF--DTFIESTLMN 362

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           +Y KCG +  A +VFNL+         KDV+ W  M+  Y  +G   E I LYE M  NG
Sbjct: 363 LYAKCGEIILARKVFNLSKE-------KDVISWNGMIAAYAHHGVGLEAIHLYEKMQENG 415

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            KP++V +V ++SACSH+G V  G+  FE+MV D  +    EHY+CL+DL  RAG L  A
Sbjct: 416 YKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDA 475

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
            +LI+ +        S ++W ALL  C+  G   +G LAA+  LE +P+N G Y +L N+
Sbjct: 476 KRLIHFL----KVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNI 531

Query: 413 YAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           YA    W E  ++R  M ++GLKK  GCSWIEV
Sbjct: 532 YASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEV 564



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 116/283 (40%), Gaps = 46/283 (16%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           +V   +AL+  YA+   + +AE +F  +P +N V  N +L  Y  +        L   MP
Sbjct: 97  NVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMP 156

Query: 180 ALGLDYDHFTLSALLRA------------------------CAGLSAA------------ 203
                  +  L+AL+R+                         AG++ +            
Sbjct: 157 VRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDG 216

Query: 204 -------EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL--AGHRL 254
                   +   +  Y      +  +D+FM+    ++     ++T  +Q  NL  A    
Sbjct: 217 MPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELF 276

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
           +    ++VV WT+M+  Y ++   +  ++L+  ML++G +P++V F+  + ACS+   + 
Sbjct: 277 DKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLS 336

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
            G +  + M+     +      S L++L  + GE+  A K+ N
Sbjct: 337 EGQQVHQ-MICKTPFQFDTFIESTLMNLYAKCGEIILARKVFN 378



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 35/229 (15%)

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV   ++L+  Y   G++  A  +F+    R      ++VV WT++L  Y R G   E  
Sbjct: 65  DVVSWTALVAAYACQGMLHDARALFDRPDAR------RNVVTWTALLSGYARAGRVDEAE 118

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM-VHDYKLEPGPEHYSCLVD 341
            L+  M     + + V++ T++ A + +G+V      F  M V D         ++ L+ 
Sbjct: 119 ALFGRM----PERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRD------AGSWNILLA 168

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL--ELD 399
            L R+G +DKA KL + M +R     +V  W  +++     G    G +   +AL   + 
Sbjct: 169 ALVRSGNIDKARKLFDRMPER-----NVMAWTTMVA-----GIARSGSVNEARALFDGMP 218

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW-IEVTG 447
             NV  +  + + YA+  M DE   L   M  + +      SW I +TG
Sbjct: 219 ERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDI-----ASWNIMITG 262


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 214/397 (53%), Gaps = 21/397 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++   +N +IS F +NG    A + F  M V     ++ +  + ++      D    KQ+
Sbjct: 97  KDTASWNTMISGFSQNGMMDQARELFLVMPVR----NSVSWNAMISGYVESGDLDLAKQL 152

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                +   + SV   +A+I  + K   I  AE  F+E+P+KN V  NA+++GY E    
Sbjct: 153 ----FEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQA 208

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GL+L + M   G   +  +LS++L  C+ LSA + G+QVH  + +   +   ++   +
Sbjct: 209 ENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSW--NITAGT 266

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL+ MY KCG +  A ++F +          KDVV W +M+  Y ++G  ++ + L++ M
Sbjct: 267 SLLSMYCKCGDLEDAWKLFLVMPQ-------KDVVTWNAMISGYAQHGAGEKALYLFDKM 319

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G KPD + FV V+SAC+H G V LGIEYF  MV DY +E  P+HY+C+VDLL R G+
Sbjct: 320 RDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGK 379

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A  LI +M  + H     +++G LL AC      EL + AA+  L LDP +   YV 
Sbjct: 380 LVEAVDLIKKMPFKPHS----AIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQ 435

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L+N+YA    WD +  +R  MK+  + K  G SWIEV
Sbjct: 436 LANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEV 472



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 155/370 (41%), Gaps = 46/370 (12%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF--GKQ 107
           N +  N VI++  R+G    AL+ F  M V      T    +S+ A  S +  +    +Q
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVK-----TTVTWNSMLAGYSNRRGKIKVARQ 58

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           +   + +      +F  + ++  Y     +  A L FD++PVK++   N ++SG+ +  +
Sbjct: 59  LFDRIPEP----DIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGM 114

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                EL  +MP                     ++  +   +  Y+     +L   +F  
Sbjct: 115 MDQARELFLVMPV-------------------RNSVSWNAMISGYVESGDLDLAKQLFEV 155

Query: 228 SSLIEMYGKCGLVTKALQV--FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +  +     ++T  ++     LA    E    K++V W +M+  Y  N   +  +KL+
Sbjct: 156 APVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLF 215

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH---DYKLEPGPEHYSCLVDL 342
           + M+ +G +P+  +  +V+  CS+   +KLG +  + +      + +  G    + L+ +
Sbjct: 216 KRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAG----TSLLSM 271

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDP 400
            C+ G+L+ AWKL   M  +      V  W A++S  A H  G+  L      +   + P
Sbjct: 272 YCKCGDLEDAWKLFLVMPQK-----DVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKP 326

Query: 401 HNVGIYVMLS 410
             +    +LS
Sbjct: 327 DWITFVAVLS 336


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/430 (31%), Positives = 222/430 (51%), Gaps = 44/430 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I+ + R   P  A+  +  M    +  D   +   ++A   ++  + G+++
Sbjct: 218 RDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREI 277

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD----------------------- 145
             ++ +SG    + + +AL+D+Y K   +   +++FD                       
Sbjct: 278 HRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLL 337

Query: 146 --------EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
                   ++P KN V  NA++    +A L    LEL R M    +  D  T+   L AC
Sbjct: 338 DMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSAC 397

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           + L A + G   H Y+ +   NL  DV + ++LI+MY KCG +TKALQVFN    R    
Sbjct: 398 SQLGALDTGMWTHNYIKKH--NLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRR---- 451

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              + + WT+++G     G   + I  +  M+ +G  PDE+ F+ V++AC H G V+ G 
Sbjct: 452 ---NSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGR 508

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           +YF+ M   + L P P+HYSC+V+LL RAG L++A +LI  M       +   +WGAL  
Sbjct: 509 KYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTM----PMEADAMVWGALFF 564

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           AC       +G+ AA K L+LDPH+ GIYV+L+N+Y +   W+E   +R++M E+G++K 
Sbjct: 565 ACGIHRNLLIGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKT 624

Query: 438 VGCSWIEVTG 447
            G S IEV G
Sbjct: 625 PGSSSIEVNG 634



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 35/297 (11%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE------LMFDEIPVKNSVCANALL 159
           KQ+QA +  +G +   F  S LI   A    I ++        + + +   N    NA++
Sbjct: 70  KQIQAQMILTGLILDGFASSRLISFCA----ISESRNLDYCIKILNNLQNPNVFSWNAVI 125

Query: 160 SGYCEAKLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
            G  E++    GL L  R++   G   D++T S L + CA L  +  G ++   +++   
Sbjct: 126 RGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLK--M 183

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
               D+++ + +I M    G    A +VF+      EG + +D+V W S++  Y R    
Sbjct: 184 GFDKDMYLYNGIIHMLVSVGESGLAHKVFD------EGCV-RDLVSWNSLINGYVRRRQP 236

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PE 334
           +E + +Y+ M+    KPDEV  + V+SAC+    +KLG E     +H Y  E G      
Sbjct: 237 REAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGRE-----IHRYIEESGLNLKIS 291

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL-GKL 390
             + L+D+  + G+L+    L + M  +     +V  W  ++      G  ++ GKL
Sbjct: 292 LVNALMDMYVKCGDLEAGKVLFDNMRKK-----TVVSWTTMIVGYAKNGLLDMAGKL 343


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 129/399 (32%), Positives = 212/399 (53%), Gaps = 14/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R    +N +I+ +   G    AL+ F  M   G   +   + +  +      D   GK  
Sbjct: 180 RTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWA 239

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           ++ + +   L ++ V +AL+++Y K   I +A   FD +  ++ V  + +++GY +    
Sbjct: 240 RSLIAEQD-LQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRP 298

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL   M A     +  TL  +L ACA L + E G Q+ +++  +  NL    ++ S
Sbjct: 299 HESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQ--NLPLTSYLGS 356

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG V +A  VFN   H++       V+ W SM+     NG+ ++ I LY+ M
Sbjct: 357 ALIDMYTKCGHVGRARSVFNRMEHKV-------VITWNSMMRGLALNGFAQDAITLYKEM 409

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                +P+E+ FV +++AC+H G V  G+ +F+ M   + + P  EH +C+VDLLC++G 
Sbjct: 410 TEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGR 469

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A+K I +M        +  +W  LLSAC      EL KLAA K L L+P N  IYV+
Sbjct: 470 LREAYKFICDM----EVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVL 525

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSN+YA   +W ++ ++R+LM+ K ++K    SWIE+ G
Sbjct: 526 LSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDG 564



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 158/345 (45%), Gaps = 45/345 (13%)

Query: 48  PRNPLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           PR P P     +IS   R  S    L  FS +H  G  +    +   + +   +  +R G
Sbjct: 46  PR-PTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQG 104

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQV  H    G L  +FV +AL+D YAK   +  A  +FDE+PVK+ +  N L++GY ++
Sbjct: 105 KQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKS 164

Query: 166 -------KLWAG------------------------GLELVRLMPALGLDYDHFTLSALL 194
                  +L+ G                         L L R M + G   +  T++ + 
Sbjct: 165 GDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMF 224

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
             CA     E G+   + +  +  +L N + + ++L+EMY KC  + +A + F+    R+
Sbjct: 225 SICAKTGDLETGKWARSLIAEQ--DLQN-MIVHTALMEMYVKCQAIDEARREFD----RM 277

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
           +    +DVV W++M+  Y +NG   E ++L+E M     KP+EV  V V+SAC+  G  +
Sbjct: 278 Q---QRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDE 334

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           LG +     V    L       S L+D+  + G + +A  + N M
Sbjct: 335 LGGQIGS-HVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRM 378



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 137/319 (42%), Gaps = 35/319 (10%)

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           L+ +     L DL +       A  +FD +P         L+S           L+    
Sbjct: 16  LAGLLKTRPLHDLLSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSS 75

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           +   G D     +  ++++CA L+A+  G+QVH + I +   L  D+F+Q++L++ Y K 
Sbjct: 76  LHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVR--GLLGDIFVQTALVDFYAKN 133

Query: 238 GLVTKALQVFN-----------------------LAGHRL-EGEINKDVVLWTSMLGVYG 273
           G +  A++VF+                       +   RL +G + +    W SM+  Y 
Sbjct: 134 GDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYA 193

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
             G ++E ++L+  ML  G +P+ +   T+ S C+ TG ++ G ++   ++ +  L+   
Sbjct: 194 HGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETG-KWARSLIAEQDLQNMI 252

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF--ELGKLA 391
            H + L+++  +   +D+A +  + M  R      V  W  +++     G+    L    
Sbjct: 253 VH-TALMEMYVKCQAIDEARREFDRMQQR-----DVVAWSTMIAGYAQNGRPHESLELFE 306

Query: 392 AQKALELDPHNVGIYVMLS 410
             KA    P+ V +  +LS
Sbjct: 307 RMKATSCKPNEVTLVGVLS 325



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/254 (20%), Positives = 106/254 (41%), Gaps = 10/254 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I  + LM  Y  C   + +         +  R+ + ++ +I+ + +NG P  +L+ F  
Sbjct: 251 MIVHTALMEMYVKC---QAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFER 307

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M       +   L   L+A   +     G Q+ +HV       + ++GSALID+Y K   
Sbjct: 308 MKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGH 367

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A  +F+ +  K  +  N+++ G          + L + M    +  +  T  ALL A
Sbjct: 368 VGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTA 427

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C      + G      M +   ++   V   + ++++  K G + +A +         + 
Sbjct: 428 CTHAGLVDQGMSFFKEM-KTIHHVSPQVEHCACIVDLLCKSGRLREAYKFI------CDM 480

Query: 257 EINKDVVLWTSMLG 270
           E+  + V+W+++L 
Sbjct: 481 EVEPNAVIWSTLLS 494


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 134/420 (31%), Positives = 224/420 (53%), Gaps = 14/420 (3%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS-PLYALKTFSFMHVHGIFLD 85
           Y  C    ++       + +   N + +  +I+ + ++G     A++ F  M    I  +
Sbjct: 276 YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPN 335

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
            ++  S L A  ++ D   G+QV ++  K G  S   VG++LI +YA+   + DA   FD
Sbjct: 336 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 395

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
            +  KN V  NA++ GY +         L   +   G+    FT ++LL   A + A   
Sbjct: 396 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 455

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G Q+H  +++      ++  + ++LI MY +CG +  A QVFN      E E +++V+ W
Sbjct: 456 GEQIHGRLLKG--GYKSNQCICNALISMYSRCGNIEAAFQVFN------EME-DRNVISW 506

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           TSM+  + ++G+    ++++  ML  GTKP+E+ +V V+SACSH G +  G ++F  M  
Sbjct: 507 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYK 566

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           ++ + P  EHY+C+VDLL R+G L +A + IN M       +   +W  LL AC   G  
Sbjct: 567 EHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM----PLMADALVWRTLLGACRVHGNT 622

Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           ELG+ AA+  LE +P +   Y++LSNL+A    W ++ ++R+ MKE+ L K+ GCSWIEV
Sbjct: 623 ELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEV 682



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 169/351 (48%), Gaps = 27/351 (7%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +LG+       +  RN + + ++I+ F + G    A+  F  M + G   D +   S L+
Sbjct: 180 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 239

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEIPVKN 151
           A T +     GKQ+ + V + G    V VG +L+D+YAK      + D+  +F+++P  N
Sbjct: 240 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 299

Query: 152 SVCANALLSGYCEA-KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
            +   A+++ Y ++ +     +EL   M +  +  +HF+ S++L+AC  LS    G QV+
Sbjct: 300 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 359

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           +Y ++    + +   + +SLI MY + G +  A + F++          K++V + +++ 
Sbjct: 360 SYAVK--LGIASVNCVGNSLISMYARSGRMEDARKAFDIL-------FEKNLVSYNAIVD 410

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y +N   +E   L+  +   G       F +++S  +  G +  G +     +H   L+
Sbjct: 411 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-----IHGRLLK 465

Query: 331 PGPEHYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            G +   C    L+ +  R G ++ A+++ NEM DR     +V  W ++++
Sbjct: 466 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDR-----NVISWTSMIT 511



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 143/304 (47%), Gaps = 29/304 (9%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           L TY++   L +    ++ + GK V   + +SG      V + LI LY+K      A L+
Sbjct: 26  LTTYSIL--LKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 144 FDEIPVKNSVCA-NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           F+ +  K  + + +A++S +    +    +     M  LG   + +  +A++RAC+  + 
Sbjct: 84  FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 143

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK-CGLVTKALQVFNLAGHRLEGEINKD 261
           A  G  ++ +++ K   L  DV +   LI+M+ K  G +  A +VF+    R       +
Sbjct: 144 AWVGEIIYGFVV-KTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPER-------N 195

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           +V WT M+  + + G  ++ I L+  M ++G  PD   + +V+SAC+  G + LG +   
Sbjct: 196 LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ--- 252

Query: 322 WMVHDYKLEPGPEHYSC----LVDLLCRA---GELDKAWKLINEMLDRGHGSSSVSMWGA 374
             +H   +  G     C    LVD+  +    G +D + K+  +M +      +V  W A
Sbjct: 253 --LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH-----NVMSWTA 305

Query: 375 LLSA 378
           +++A
Sbjct: 306 IITA 309



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 123/287 (42%), Gaps = 40/287 (13%)

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
           LM       D  T S LL++C      + G+ VH  +++    L  D  + ++LI +Y K
Sbjct: 16  LMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLEL--DSVVLNTLISLYSK 73

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG    A  +F   G++      +D+V W++M+  +  N    + I  +  ML  G  P+
Sbjct: 74  CGDTETARLIFEGMGNK------RDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPN 127

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR-AGELDKAWKL 355
           E  F  VI ACS+     +G   + ++V    LE        L+D+  + +G+L  A+K+
Sbjct: 128 EYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKV 187

Query: 356 INEMLDR---------------GHGSSSVSM---------------WGALLSACHDCGKF 385
            ++M +R               G    ++ +               + ++LSAC + G  
Sbjct: 188 FDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLL 247

Query: 386 ELGKLAAQKALELD-PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
            LGK    + + L    +V +   L ++YAK      +   R++ ++
Sbjct: 248 ALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQ 294


>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
 gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
          Length = 502

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 129/384 (33%), Positives = 215/384 (55%), Gaps = 16/384 (4%)

Query: 67  PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSA 126
           P  A++  S +   G+  D Y++ + L A   ++D   G        + G L++V V  A
Sbjct: 84  PGTAVELISRLLASGLRPDRYSIPAVLRACAELRDMLLGAVFHGLALRLGLLANVVVSGA 143

Query: 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR--LMPALGLD 184
           L+D+YAK  ++ DA  +FDE+P +++V  N +++GY  A      LEL R   + ++ + 
Sbjct: 144 LLDMYAKTGMLADATRVFDEMPERDAVVWNCMVTGYARAGRSEETLELFRKAQIESVDMA 203

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D   +  +L  CA       GR++H  M+R C    +D+ + ++L++MY KCG V  A 
Sbjct: 204 RDLRAVPNVLNVCANEGQLMKGREIHGRMVR-CFAFDSDIAVGNALVDMYAKCGQVDGAQ 262

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
            VF  A  ++     ++V+ W++++  YG +G  KE +++YE M+  G KP+ + F++++
Sbjct: 263 AVF--ASMKV-----RNVMSWSTLISCYGVHGMGKEALRIYEEMVSRGVKPNCITFISIL 315

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM-LDRG 363
           S+CSH+G V  G   FE M   + +EP  +HY+C+VDLL RAG +++A  +I +M ++ G
Sbjct: 316 SSCSHSGLVSDGRRIFESMSKVHAVEPTADHYACMVDLLGRAGAIEEAVGIIRKMPMEPG 375

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423
                 S+WGALLSAC      ++G++AA K  EL+  N   YV L  +Y      D + 
Sbjct: 376 -----ASLWGALLSACATHNNVDVGEVAAYKLFELEEGNASNYVTLCGIYDAIGRSDSVS 430

Query: 424 QLRELMKEKGLKKDVGCSWIEVTG 447
            +R  M+E G+ K  GCSW+ V G
Sbjct: 431 GIRSRMRELGMVKTPGCSWVHVKG 454



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 137/311 (44%), Gaps = 22/311 (7%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G QV A     G L +  + +  + LY++   +H A  +FD +   +    N LL+    
Sbjct: 25  GAQVHAQGLVGGLLPNTTLDTDFVLLYSRCGALHRARQVFDGMSFPSMHAYNVLLA---- 80

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
           A      +EL+  + A GL  D +++ A+LRACA L     G   H   +R    L  +V
Sbjct: 81  ASPPGTAVELISRLLASGLRPDRYSIPAVLRACAELRDMLLGAVFHGLALRL--GLLANV 138

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            +  +L++MY K G++  A +VF+    R       D V+W  M+  Y R G  +E ++L
Sbjct: 139 VVSGALLDMYAKTGMLADATRVFDEMPER-------DAVVWNCMVTGYARAGRSEETLEL 191

Query: 285 YEAMLMNGTK--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +    +       D  A   V++ C++ GQ+  G E    MV  +  +      + LVD+
Sbjct: 192 FRKAQIESVDMARDLRAVPNVLNVCANEGQLMKGREIHGRMVRCFAFDSDIAVGNALVDM 251

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDP 400
             + G++D A  +   M  R     +V  W  L+S    H  GK  L       +  + P
Sbjct: 252 YAKCGQVDGAQAVFASMKVR-----NVMSWSTLISCYGVHGMGKEALRIYEEMVSRGVKP 306

Query: 401 HNVGIYVMLSN 411
           + +    +LS+
Sbjct: 307 NCITFISILSS 317



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 19/197 (9%)

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           LS L+R CA   A   G QVHA  +     L  +  + +  + +Y +CG + +A QVF+ 
Sbjct: 9   LSVLIRRCAASGALSPGAQVHAQGL--VGGLLPNTTLDTDFVLLYSRCGALHRARQVFD- 65

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
            G         +V+L  S  G           ++L   +L +G +PD  +   V+ AC+ 
Sbjct: 66  -GMSFPSMHAYNVLLAASPPGT---------AVELISRLLASGLRPDRYSIPAVLRACAE 115

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
              + LG   F  +     L         L+D+  + G L  A ++ +EM +R       
Sbjct: 116 LRDMLLG-AVFHGLALRLGLLANVVVSGALLDMYAKTGMLADATRVFDEMPER-----DA 169

Query: 370 SMWGALLSACHDCGKFE 386
            +W  +++     G+ E
Sbjct: 170 VVWNCMVTGYARAGRSE 186


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 226/442 (51%), Gaps = 18/442 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H    + GL     I   + L+  Y  C   ++   + + L+F++    + +  +I  +
Sbjct: 245 IHGSVIKYGLSTNSFI--SASLLDMYAKCEKVEDARRVFDELEFVDI---VLWTAMIVGY 299

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +N  PL AL+ F       I  ++  + + ++AS  ++    G+ V A   K G + S 
Sbjct: 300 TQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESD 359

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            V +AL+D+YAK   + +A  +F  I +K+ V  N++++GY E  +    L L   M   
Sbjct: 360 VVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQ 419

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G+  D  ++   L AC  L+    G+  H Y I+      +++++ ++L+ +Y KC  + 
Sbjct: 420 GISPDAISVVNALSACVCLADLHIGKGFHTYAIKYA--FMSNIYVNTALLNLYSKCADLP 477

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A +VFN          +++ V W++M+G YG  G     I L+  ML     P+EV F 
Sbjct: 478 SAQRVFN-------DMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFT 530

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           +++SACSHTG V  G EYF+ M   + + P  +HY+C+VD++ RAG L++A + I  M  
Sbjct: 531 SILSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPI 590

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           +    + +S+WG+ L  C    + E G+ A +K   L P     YV++SNLY  +  WD+
Sbjct: 591 K----AGISVWGSFLHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDK 646

Query: 422 IGQLRELMKEKGLKKDVGCSWI 443
              +R  M+E+GL K  GCS +
Sbjct: 647 SQTIRRWMQEQGLVKLPGCSSV 668



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 163/344 (47%), Gaps = 20/344 (5%)

Query: 37  GTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G L N  K  +    RN + +  ++S   +NG     L  F+ M    +    Y + S L
Sbjct: 171 GDLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVL 230

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A   +     G+ +   V K G  ++ F+ ++L+D+YAK   + DA  +FDE+   + V
Sbjct: 231 AACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIV 290

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
              A++ GY + K     L+L      + +  +  T++ ++ A A L     GR VHA  
Sbjct: 291 LWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIG 350

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVY 272
           + K   + +DV ++++L++MY KC  + +A  +F        G I  KDVV W SM+  Y
Sbjct: 351 V-KLGTMESDV-VRNALVDMYAKCQALPEANSIF--------GRILIKDVVAWNSMMAGY 400

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
             NG   E + L+  M M G  PD ++ V  +SAC     + +G  +  + +  Y     
Sbjct: 401 SENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAI-KYAFMSN 459

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
               + L++L  +  +L  A ++ N+M DR    +SV+ W A++
Sbjct: 460 IYVNTALLNLYSKCADLPSAQRVFNDMTDR----NSVT-WSAMI 498



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 140/295 (47%), Gaps = 16/295 (5%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           L  +L A     D R+G+++   V K+G     FV ++L+D+YAK   + +A  +FD +P
Sbjct: 126 LSLALKACVRSADFRYGRRLHCDVVKAGGADG-FVMNSLVDMYAKAGDLENARKVFDRVP 184

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
            +N V   ++LSG  +  +   GL L   M    +    +T+ ++L ACA L     GR 
Sbjct: 185 ERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRW 244

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +H  +I+    L  + F+ +SL++MY KC  V  A +VF+      E E   D+VLWT+M
Sbjct: 245 IHGSVIKY--GLSTNSFISASLLDMYAKCEKVEDARRVFD------ELEF-VDIVLWTAM 295

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y +N    + ++L+         P+ V   TVISA +    + LG       V    
Sbjct: 296 IVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGT 355

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           +E      + LVD+  +   L +A  +   +L +      V  W ++++   + G
Sbjct: 356 MESDVVR-NALVDMYAKCQALPEANSIFGRILIK-----DVVAWNSMMAGYSENG 404


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 134/420 (31%), Positives = 224/420 (53%), Gaps = 14/420 (3%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS-PLYALKTFSFMHVHGIFLD 85
           Y  C    ++       + +   N + +  +I+ + ++G     A++ F  M    I  +
Sbjct: 294 YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPN 353

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
            ++  S L A  ++ D   G+QV ++  K G  S   VG++LI +YA+   + DA   FD
Sbjct: 354 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 413

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
            +  KN V  NA++ GY +         L   +   G+    FT ++LL   A + A   
Sbjct: 414 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 473

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G Q+H  +++      ++  + ++LI MY +CG +  A QVFN      E E +++V+ W
Sbjct: 474 GEQIHGRLLKG--GYKSNQCICNALISMYSRCGNIEAAFQVFN------EME-DRNVISW 524

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           TSM+  + ++G+    ++++  ML  GTKP+E+ +V V+SACSH G +  G ++F  M  
Sbjct: 525 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYK 584

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           ++ + P  EHY+C+VDLL R+G L +A + IN M       +   +W  LL AC   G  
Sbjct: 585 EHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM----PLMADALVWRTLLGACRVHGNT 640

Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           ELG+ AA+  LE +P +   Y++LSNL+A    W ++ ++R+ MKE+ L K+ GCSWIEV
Sbjct: 641 ELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEV 700



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 169/351 (48%), Gaps = 27/351 (7%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +LG+       +  RN + + ++I+ F + G    A+  F  M + G   D +   S L+
Sbjct: 198 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 257

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEIPVKN 151
           A T +     GKQ+ + V + G    V VG +L+D+YAK      + D+  +F+++P  N
Sbjct: 258 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 317

Query: 152 SVCANALLSGYCEA-KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
            +   A+++ Y ++ +     +EL   M +  +  +HF+ S++L+AC  LS    G QV+
Sbjct: 318 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 377

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           +Y ++    + +   + +SLI MY + G +  A + F++          K++V + +++ 
Sbjct: 378 SYAVK--LGIASVNCVGNSLISMYARSGRMEDARKAFDIL-------FEKNLVSYNAIVD 428

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y +N   +E   L+  +   G       F +++S  +  G +  G +     +H   L+
Sbjct: 429 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ-----IHGRLLK 483

Query: 331 PGPEHYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            G +   C    L+ +  R G ++ A+++ NEM DR     +V  W ++++
Sbjct: 484 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDR-----NVISWTSMIT 529



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 145/310 (46%), Gaps = 29/310 (9%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           L TY++   L +    ++ + GK V   + +SG      V + LI LY+K      A L+
Sbjct: 44  LTTYSIL--LKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 101

Query: 144 FDEIPVKNSVCA-NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           F+ +  K  + + +A++S +    +    +     M  LG   + +  +A++RAC+  + 
Sbjct: 102 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 161

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK-CGLVTKALQVFNLAGHRLEGEINKD 261
           A  G  ++ +++ K   L  DV +   LI+M+ K  G +  A +VF+    R       +
Sbjct: 162 AWVGEIIYGFVV-KTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPER-------N 213

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
           +V WT M+  + + G  ++ I L+  M ++G  PD   + +V+SAC+  G + LG +   
Sbjct: 214 LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ--- 270

Query: 322 WMVHDYKLEPGPEHYSC----LVDLLCRA---GELDKAWKLINEMLDRGHGSSSVSMWGA 374
             +H   +  G     C    LVD+  +    G +D + K+  +M +      +V  W A
Sbjct: 271 --LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH-----NVMSWTA 323

Query: 375 LLSACHDCGK 384
           +++A    G+
Sbjct: 324 IITAYVQSGE 333



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 123/287 (42%), Gaps = 40/287 (13%)

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
           LM       D  T S LL++C      + G+ VH  +++    L  D  + ++LI +Y K
Sbjct: 34  LMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLEL--DSVVLNTLISLYSK 91

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG    A  +F   G++      +D+V W++M+  +  N    + I  +  ML  G  P+
Sbjct: 92  CGDTETARLIFEGMGNK------RDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPN 145

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR-AGELDKAWKL 355
           E  F  VI ACS+     +G   + ++V    LE        L+D+  + +G+L  A+K+
Sbjct: 146 EYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKV 205

Query: 356 INEMLDR---------------GHGSSSVSM---------------WGALLSACHDCGKF 385
            ++M +R               G    ++ +               + ++LSAC + G  
Sbjct: 206 FDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLL 265

Query: 386 ELGKLAAQKALELD-PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
            LGK    + + L    +V +   L ++YAK      +   R++ ++
Sbjct: 266 ALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQ 312


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 135/432 (31%), Positives = 229/432 (53%), Gaps = 45/432 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  RN + + V+I  F + G    +L+ F+ M    + +D +AL + ++  ++  D    
Sbjct: 355 LRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLA 414

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM---------------------- 143
           +Q+ +   KSG   +V + ++LI +YAK   + +AE +                      
Sbjct: 415 RQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQV 474

Query: 144 ---------FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSAL 193
                    FD +  +N +  NA+L  Y +      GL++   M     +  D  T   L
Sbjct: 475 GNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTL 534

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
            R CA + A + G Q+  + ++    L  D  + +++I MY KCG +++A ++F+     
Sbjct: 535 FRGCADMGANKLGDQITGHTVK--VGLILDTSVMNAVITMYSKCGRISEARKIFDFLSR- 591

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                 KD+V W +M+  Y ++G  K+ I++++ ML  G KPD +++V V+S+CSH+G V
Sbjct: 592 ------KDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLV 645

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  YF+ +  D+ + PG EH+SC+VDLL RAG L +A  LI+EM  +     +  +WG
Sbjct: 646 QEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMK----PTAEVWG 701

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALLSAC   G  EL +LAA+   +LD  + G Y++L+ +YA      +  Q+R+LM++KG
Sbjct: 702 ALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKG 761

Query: 434 LKKDVGCSWIEV 445
           +KK+ G SW+EV
Sbjct: 762 IKKNPGYSWMEV 773



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 140/293 (47%), Gaps = 27/293 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N+++S   ++G    AL     MH  G+ LD+    SSLTA   +    +GKQ+
Sbjct: 257 RDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQL 316

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V +S      +V SA+++LYAK     +A  +F  +  +N+V    L+ G+ +   +
Sbjct: 317 HAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCF 376

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
           +  LEL   M A  +  D F L+ ++  C+        RQ+H+  ++        V + +
Sbjct: 377 SESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRA--VVISN 434

Query: 229 SLIEMYGKC----------------------GLVTKALQVFNLAGHR--LEGEINKDVVL 264
           SLI MY KC                      G++T   QV N+   R   +G   ++V+ 
Sbjct: 435 SLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVIT 494

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKPDEVAFVTVISACSHTGQVKLG 316
           W +MLG Y ++G  ++ +K+Y AML      PD V +VT+   C+  G  KLG
Sbjct: 495 WNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLG 547



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 169/389 (43%), Gaps = 58/389 (14%)

Query: 36  LGTLTNCLKFLN--PRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFL-DTYALCS 91
           LG+L++  +     PR  +  +N ++S + ++G  L A+++F  M   G  L + +    
Sbjct: 108 LGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGC 167

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           ++ +  ++       Q+   +TK G+     V + ++D++ +   +  A   F +I    
Sbjct: 168 AMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPT 227

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPAL------------------------------ 181
             C N++L+GY ++      LEL   MP                                
Sbjct: 228 VFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHN 287

Query: 182 -GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  D  T ++ L ACA LS+  +G+Q+HA +IR    +  D ++ S+++E+Y KCG  
Sbjct: 288 RGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCI--DPYVASAMVELYAKCGCF 345

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +A +VF+    R       + V WT ++G + + G F E ++L+  M       D+ A 
Sbjct: 346 KEARRVFSSLRDR-------NTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFAL 398

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLI 356
            T+IS CS+   + L  +     +H   L+ G        + L+ +  + G L  A  + 
Sbjct: 399 ATIISGCSNRMDMCLARQ-----LHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIF 453

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           + M +R      +  W  +L+A    G  
Sbjct: 454 SSMEER-----DIVSWTGMLTAYSQVGNI 477



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 120/285 (42%), Gaps = 28/285 (9%)

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
           +V   + +++ YAKL  + DAE +F  +P ++    N L+SGY ++  +   +E    M 
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 180 ALGLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
             G    + FT    +++C  L   E   Q+   + +       D  + + +++M+ +CG
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTK--FGFQGDPDVATGIVDMFVRCG 211

Query: 239 LVTKALQVFN-------------LAGHR-----------LEGEINKDVVLWTSMLGVYGR 274
            V  A + F+             LAG+             E    +DVV W  M+    +
Sbjct: 212 AVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQ 271

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           +G  +E + +   M   G + D   + + ++AC+    +  G +    ++        P 
Sbjct: 272 SGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPC-IDPY 330

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
             S +V+L  + G   +A ++ + + DR   S +V + G L   C
Sbjct: 331 VASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGC 375


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 216/400 (54%), Gaps = 13/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +N +IS +   G+   AL+ F  M    +  D   + + ++A         G+QV
Sbjct: 170 KDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQV 229

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +   G+ S++ + +ALIDLY+K   +  A  + + +  K+ +  N L+ GY    L+
Sbjct: 230 HSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLY 289

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL--GNDVFM 226
              L L + M   G   +  T+ ++L ACA L A + GR +H Y+ +K   +   N   +
Sbjct: 290 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSL 349

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           ++SLI+MY KCG +  A QV + +        N+ +  W +M+  +  +G       ++ 
Sbjct: 350 RTSLIDMYAKCGDIDAAPQVSDSSA------FNRSLSTWNAMIFGFAMHGRANAAFDIFS 403

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M  NG +PD++ FV ++SACSH+G + LG   F  M  DY + P  EHY C++DLL  +
Sbjct: 404 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHS 463

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G   +A ++IN M     G     +W +LL AC   G  ELG+  A+K ++++P N G Y
Sbjct: 464 GLFKEAEEMINTMPMEPDG----VIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSY 519

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV-GCSWIEV 445
           V+LSN+YA    W+E+ ++R L+ +KG+KK V GCS IE+
Sbjct: 520 VLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEI 559



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 176/361 (48%), Gaps = 47/361 (13%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N L +N++      +  P+ ALK +  M   G+  + +     L +    K  + G+Q+ 
Sbjct: 39  NQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIH 98

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL--------------------------- 142
            HV K G+   ++V ++LI +YA+   + DA+                            
Sbjct: 99  GHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIE 158

Query: 143 ----MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
               MFDEIP+K+ V  NA++SGY E   +   LEL + M    +  D  T++ ++ ACA
Sbjct: 159 SAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACA 218

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
              + E GRQVH+++       G+++ + ++LI++Y KCG V  A ++       LEG  
Sbjct: 219 QSGSIELGRQVHSWI--NDHGFGSNLKIVNALIDLYSKCGEVETACEL-------LEGLS 269

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI- 317
           NKDV+ W +++G Y     +KE + L++ ML +G  P++V  ++++ AC+H G + +G  
Sbjct: 270 NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 329

Query: 318 --EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
              Y +  +    +       + L+D+  + G++D A     ++ D    + S+S W A+
Sbjct: 330 IHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAA----PQVSDSSAFNRSLSTWNAM 385

Query: 376 L 376
           +
Sbjct: 386 I 386



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 59/302 (19%)

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F+ IP  N +  N +  G+  +      L+L  +M +LGL  + FT   LL++CA    
Sbjct: 31  VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR--------- 253
            + G+Q+H ++++   +L  D+++ +SLI MY + G +  A +VF+ + HR         
Sbjct: 91  FKEGQQIHGHVLKLGFDL--DLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALI 148

Query: 254 --------------LEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
                         +  EI  KDVV W +M+  Y   G +K+ ++L++ M+    KPDE 
Sbjct: 149 TGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDES 208

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA------ 352
              TV+SAC+ +G ++LG +   W ++D+      +  + L+DL  + GE++ A      
Sbjct: 209 TMATVVSACAQSGSIELGRQVHSW-INDHGFGSNLKIVNALIDLYSKCGEVETACELLEG 267

Query: 353 --------WK-----------------LINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
                   W                  L  EML  G   + V+M  ++L AC   G  ++
Sbjct: 268 LSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTML-SILPACAHLGAIDI 326

Query: 388 GK 389
           G+
Sbjct: 327 GR 328


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 134/400 (33%), Positives = 217/400 (54%), Gaps = 14/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ + +  +I+ + +N  P  A+     M       + +   S L A+ +  D+  G
Sbjct: 112 MRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIG 171

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ A   K  W   V+VGSAL+D+YA+  ++  A  +FD++  KN V  NAL+SG+   
Sbjct: 172 RQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARK 231

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L     M   G +  HFT S++  + A L A E G+ VHA+MI+    +    F
Sbjct: 232 GDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKM--TAF 289

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
             ++L++MY K G +  A +VF+    R++   +KD+V W +ML  + + G  KE +  +
Sbjct: 290 AGNTLLDMYAKSGSMIDARKVFD----RVD---DKDLVTWNTMLTAFAQYGLGKEAVSHF 342

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M  +G   ++V F+ +++ACSH G VK G  YFE M+ +Y LEP  +H+  +V LL R
Sbjct: 343 EEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPEIDHFVTVVALLGR 401

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L+ A   I +M        + ++WGALL+AC      ++G+ AA    ELDP + G 
Sbjct: 402 AGLLNFALVFIFKMPI----EPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGP 457

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            V+L N+YA    WD   ++R +MK  G+KK+  CSW+E+
Sbjct: 458 PVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEM 497



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 160/319 (50%), Gaps = 28/319 (8%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           +TA    K+    ++V AH+  S +    F+ ++LI LY K   + +A  +FDE+  K+ 
Sbjct: 58  ITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDM 117

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V   +L++GY +  +    + L+  M       + FT ++LL+A    + +  GRQ+HA 
Sbjct: 118 VSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHAL 177

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            ++  C+   DV++ S+L++MY +CG++  A  VF+    +L+   +K+ V W +++  +
Sbjct: 178 AVK--CDWHEDVYVGSALLDMYARCGMMDMATAVFD----KLD---SKNGVSWNALISGF 228

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            R G  +  +  +  ML NG +     + +V S+ +  G ++ G    +W VH + ++  
Sbjct: 229 ARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG----KW-VHAHMIKSR 283

Query: 333 PEHYS----CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
            +  +     L+D+  ++G +  A K+ + + D+      +  W  +L+A     ++ LG
Sbjct: 284 QKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDK-----DLVTWNTMLTA---FAQYGLG 335

Query: 389 KLAAQKALELDPHNVGIYV 407
           K A     E+     GIY+
Sbjct: 336 KEAVSHFEEM--RKSGIYL 352


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 208/391 (53%), Gaps = 15/391 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +  +I  + +NG+PL AL+ F       I  ++    + L+AS  ++D   GK +     
Sbjct: 335 WTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAV 394

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G +    VG+AL+D+YAK   + +A+ +F  I  K+ V  N+++SGY E  +    L 
Sbjct: 395 KLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALM 454

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L + M   G   D  ++   L A   L     G+ +H Y ++      +++++ ++L+ +
Sbjct: 455 LFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHA--FVSNIYVDTALLNL 512

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           Y KCG +  A +VF+        E+N ++ V W +M+G YG  G     I L+  ML +G
Sbjct: 513 YNKCGDLLSARRVFD--------EMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDG 564

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
             P+++AF +++S CSH+G V  G  YF+ M   + + P  +HY+C+VD+L RAG L+ A
Sbjct: 565 VYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDA 624

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
            + I+ M  +    +  S+WGA L  C    + +  + A ++ + L P    +YV++SNL
Sbjct: 625 LEFIDNMPMQ----ADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLISNL 680

Query: 413 YAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           Y    MWD+   +R  M+EKGL K  GCS +
Sbjct: 681 YTSNGMWDKSLAIRRWMQEKGLVKLPGCSSV 711



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 149/319 (46%), Gaps = 20/319 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS   +NG     L  F+ M    +    Y + + +TA +++     G+ +
Sbjct: 229 RNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWM 288

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K G +S+ F+ +AL+D+Y K   +  A  +FDE+   + V    ++ GY +    
Sbjct: 289 HGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNP 348

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L        +  +  T + +L A A L     G+ +H   ++    L     + +
Sbjct: 349 LDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVK--LGLVEYNVVGN 406

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +L++MY KC  V++A ++F        G I NKDVV W SM+  Y  N    + + L++ 
Sbjct: 407 ALVDMYAKCQAVSEADRIF--------GRISNKDVVAWNSMISGYAENNMGDDALMLFKQ 458

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHY--SCLVDLL 343
           M + G+ PD ++ V  +SA    G + +G       +H Y ++       Y  + L++L 
Sbjct: 459 MSLQGSSPDAISVVNALSASVCLGDLLIGKS-----IHGYAVKHAFVSNIYVDTALLNLY 513

Query: 344 CRAGELDKAWKLINEMLDR 362
            + G+L  A ++ +EM DR
Sbjct: 514 NKCGDLLSARRVFDEMNDR 532



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 141/297 (47%), Gaps = 24/297 (8%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D + L  +L A     +  +G+ +     K G     FV ++L+D+YAK   +  A  +F
Sbjct: 165 DDFVLSLALKACIRSAEYSYGRSLHCDAIKVGGADG-FVMNSLVDMYAKAEDLECARKVF 223

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           + IP +N V   +++SG  +    + GL L   M    +    +T++ ++ AC+ L    
Sbjct: 224 ERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLH 283

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            GR +H  +I++   L ++ F+ ++L++MY KCG +  A  VF+   +        D+VL
Sbjct: 284 QGRWMHGSVIKQ--GLMSNSFISAALLDMYVKCGELDHARCVFDELSY-------IDLVL 334

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           WT+M+  Y +NG   + ++L+         P+ V   TV+SA +    + LG       +
Sbjct: 335 WTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKS-----I 389

Query: 325 HDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           H   ++ G   Y    + LVD+  +   + +A ++   + ++      V  W +++S
Sbjct: 390 HGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNK-----DVVAWNSMIS 441



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 129/281 (45%), Gaps = 14/281 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ ++ + +N +IS +  N     AL  F  M + G   D  ++ ++L+AS  + D   G
Sbjct: 428 ISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIG 487

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K +  +  K  ++S+++V +AL++LY K   +  A  +FDE+  +NSV   A++ GY   
Sbjct: 488 KSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQ 547

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              AG + L   M   G+  +    +++L  C+       G++    M +   N+   + 
Sbjct: 548 GDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQH-FNITPSMK 606

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML---GVYGRNGYFKEVI 282
             + ++++  + G +  AL+  +         +  D  +W + L    ++ R  + +E I
Sbjct: 607 HYACMVDVLARAGNLEDALEFID------NMPMQADTSVWGAFLHGCELHSRLQFAEEAI 660

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
           K    M+++  +PD   +V + +  +  G     +    WM
Sbjct: 661 K--RMMVLHPERPD--LYVLISNLYTSNGMWDKSLAIRRWM 697


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 228/422 (54%), Gaps = 22/422 (5%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCR-NGSPLYALKTFSFMHVHGIFLD 85
           YT  + ++++       K +   N + +  +IS + +  G    A++    M    I  +
Sbjct: 294 YTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPN 353

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
                S L A  ++ D   G+Q+ A V K+   +   VG+AL+ +YA+   + +A   FD
Sbjct: 354 HLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFD 413

Query: 146 EIPVKN--SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           ++  +N  S  ++   +G   A  W+  +E      ++ +    FT ++LL A A +   
Sbjct: 414 QLYERNLLSTSSDIGETGRSNAS-WSSQIE------SMDVGVSTFTFASLLSAAATVGLP 466

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
             G+Q+HA  I+      +D  + +SL+ MY +CG +  A + F+      E E + +V+
Sbjct: 467 TKGQQLHALSIKT--GFESDKGISNSLVSMYSRCGYLDDACRAFD------EMEDDHNVI 518

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            WTS++    ++G+ +  + L+  M+++G KP++V ++ V+SACSH G VK G EYF  M
Sbjct: 519 SWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSM 578

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
             D++L P  EHY+C+VDLL R+G + +A + INEM  +    +   +W  LL AC    
Sbjct: 579 QKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCK----ADALVWKTLLGACRTYE 634

Query: 384 KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
             E+G++AA+  ++L+P +   YV+LSNLYA   +WDE+ ++R LM+ + L K+ G SW+
Sbjct: 635 NIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWM 694

Query: 444 EV 445
            V
Sbjct: 695 HV 696



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 191/428 (44%), Gaps = 33/428 (7%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           L+  Y+ C H +    + + ++ L  R+ + +  +     RNG+   AL     M   G+
Sbjct: 85  LLTMYSKCGHVRAARRVFDGMRGL--RDLVSWTAMAFCLTRNGAEQEALVLLGEMLESGL 142

Query: 83  FLDTYALCSSLTASTSVKDARF-GKQVQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHDA 140
             + + LC++  A    +  R  G  V     K+G W + V VG ALID++A+   +  A
Sbjct: 143 RPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNGDLVAA 202

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +F+ +  +  V    +++ Y +       +EL   M   G + D +T+S+++ ACA  
Sbjct: 203 RKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQ 262

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
            +A  G+Q+H+ ++R    L +D  +   L++MY K  +     Q    A    +     
Sbjct: 263 GSAGLGQQLHSLVLR--LGLVSDTCVSCGLVDMYTKLQME----QSMECARKVFKRMPTH 316

Query: 261 DVVLWTSMLGVYGR-NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           +V+ WT+++  Y +  G     ++L   ML    +P+ + + +++ AC++      G + 
Sbjct: 317 NVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQI 376

Query: 320 FEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
              ++   K   G  +   + LV +   +G +++A K  +++ +R            LLS
Sbjct: 377 HARVM---KTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERN-----------LLS 422

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGI----YVMLSNLYAKFCMWDEIGQLRELMKEKG 433
              D G  E G+  A  + +++  +VG+    +  L +  A   +  +  QL  L  + G
Sbjct: 423 TSSDIG--ETGRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTG 480

Query: 434 LKKDVGCS 441
            + D G S
Sbjct: 481 FESDKGIS 488



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 29/182 (15%)

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLEGEINKDVV 263
            GR +H  ++     L  D  + +SL+ MY KCG V  A +VF+ + G R       D+V
Sbjct: 61  LGRALHRRLLGTEV-LDADALVANSLLTMYSKCGHVRAARRVFDGMRGLR-------DLV 112

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC------SHTGQVKLG- 316
            WT+M     RNG  +E + L   ML +G +P+         AC        +G   LG 
Sbjct: 113 SWTAMAFCLTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGF 172

Query: 317 -IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
            I+   W      +  G      L+D+  R G+L  A K+ N +++R     +V +W  +
Sbjct: 173 AIKTGFW---GTDVSVG----CALIDMFARNGDLVAARKVFNGLVER-----TVVVWTLM 220

Query: 376 LS 377
           ++
Sbjct: 221 IT 222


>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
 gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
          Length = 492

 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 140/434 (32%), Positives = 226/434 (52%), Gaps = 21/434 (4%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKT 73
           I  Q+ L+L Y+ C      G L +  K  +    RN   +N++I+ +  N     AL  
Sbjct: 41  ITLQTDLLLVYSKC------GVLQDARKVFDKMVERNMHSWNILIASYAHNCFFYDALGV 94

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F      G   D + L     A   + D+  GK + + V + G+   V VGS+++D YAK
Sbjct: 95  FDSFLKMGFRPDHFTLPPVFKACAGIGDSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYAK 154

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              + DA   F  +  ++SV  N ++ G  +A  +   LE  R M + G+  D  T+ ++
Sbjct: 155 CGGLVDAWRCFVNMSWRDSVVWNLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSI 214

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L  C G      G+++H  +++     G +V + +SLI+MY KCG +  + +VF      
Sbjct: 215 LSVCGGEGDLMKGKEIHGQVVKNQI-FGCEVAIGNSLIDMYAKCGCLHDSEKVFTTMS-- 271

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
              E+N  +V WTSM+  YG +G   E + L++ M   G +P+ V    ++++CSH+G +
Sbjct: 272 ---ELN--LVTWTSMISCYGVHGKGHEALALFKKMKYCGFQPNCVTITAILASCSHSGLI 326

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G + F  +  DY  EP  EHY+C+VDLL R G L++A++LI  M      +++ S+WG
Sbjct: 327 EQGRKIFYSINLDYGFEPSAEHYACMVDLLGRFGYLEEAFELIKNM----KSAATASVWG 382

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL+ C      E+G++AA    EL+P N   Y+ L ++Y    +WD + + R  M+E G
Sbjct: 383 ALLAGCLMHKNIEIGEIAAHCLFELEPRNSSNYIALCSMYDSLGIWDGVSRTRAKMRELG 442

Query: 434 LKKDVGCSWIEVTG 447
           L K  GCSWI V G
Sbjct: 443 LVKTPGCSWITVAG 456



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 143/310 (46%), Gaps = 18/310 (5%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
            KQ  A +   G++ ++ + + L+ +Y+K  ++ DA  +FD++  +N    N L++ Y  
Sbjct: 25  AKQTHAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKVFDKMVERNMHSWNILIASYAH 84

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
              +   L +      +G   DHFTL  + +ACAG+  +  G+ +H+++IR        V
Sbjct: 85  NCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDSYLGKMLHSWVIR--IGFEEYV 142

Query: 225 FMQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
            + SS+++ Y KCG +  A + F N++         +D V+W  M+   G+  +F++ ++
Sbjct: 143 VVGSSVLDFYAKCGGLVDAWRCFVNMSW--------RDSVVWNLMIVGLGKACFFRDALE 194

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLL 343
            +  ML  G K D     +++S C   G +  G E    +V +          + L+D+ 
Sbjct: 195 CFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVKNQIFGCEVAIGNSLIDMY 254

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPH 401
            + G L  + K+   M +      ++  W +++S    H  G   L      K     P+
Sbjct: 255 AKCGCLHDSEKVFTTMSEL-----NLVTWTSMISCYGVHGKGHEALALFKKMKYCGFQPN 309

Query: 402 NVGIYVMLSN 411
            V I  +L++
Sbjct: 310 CVTITAILAS 319



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 18/175 (10%)

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           +LS +LR C   SA    +Q HA ++        ++ +Q+ L+ +Y KCG++  A +VF+
Sbjct: 8   SLSCILRKCVPHSAISQAKQTHAQILVH--GFIPNITLQTDLLLVYSKCGVLQDARKVFD 65

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                    + +++  W  ++  Y  N +F + + ++++ L  G +PD      V  AC+
Sbjct: 66  KM-------VERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACA 118

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEM 359
             G   LG      M+H + +  G E Y    S ++D   + G L  AW+    M
Sbjct: 119 GIGDSYLGK-----MLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNM 168


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 135/429 (31%), Positives = 211/429 (49%), Gaps = 48/429 (11%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RNP+ +NV+I+ + R GS   A + F  M    +   T A+      + SV  A   
Sbjct: 215 MQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRT-AIMRGYLQNGSVDAAWKV 273

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE- 164
            +   H     W       + ++D + +   + DA  +F E+P ++ +  NA+L GY + 
Sbjct: 274 FKDMPHRDTVAW-------NTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQ 326

Query: 165 -----AKLW---------------------AGGLELVRLMPALGLDYDHFTLSALLRACA 198
                A  W                      G L L+  M   GL  D  TLS ++  CA
Sbjct: 327 GDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICA 386

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            L +   G+ VH + I+      +D  + SSLI MY KCGL+++A QVF L        +
Sbjct: 387 SLVSLGCGKMVHLWAIK--TGFEHDALVMSSLISMYSKCGLISEASQVFELI-------L 437

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            +D V W +M+  Y  +G   E +K+++ M   G +PD   F++++SAC+H G +  G  
Sbjct: 438 QRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCY 497

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +F  M  D+ L P  +HYSC+VDLL R+G + +A+        R       + W  L S 
Sbjct: 498 HFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTR----RIPSDHRTTAWETLFSV 553

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           C+  G+ +LG++ A+  L+  P + G+Y +LSN+YA   MW     +R  MKE+GLKK+ 
Sbjct: 554 CNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKET 613

Query: 439 GCSWIEVTG 447
           GCSWIE+ G
Sbjct: 614 GCSWIELKG 622



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 147/357 (41%), Gaps = 60/357 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N ++S + RNG    A + F  M     + D  +  + ++     K  R  +++
Sbjct: 125 RNVVSWNAMVSGYARNGMVKRARELFDMMP----WRDDVSWLTMISGYIKRKHVREAREL 180

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              +          V +AL+  Y +L  +  AE++F ++  +N V  N +++GY  A   
Sbjct: 181 FDSMPSP----PTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSM 236

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                L   MP    + D  + +A++R      + +   +V   M  +      D    +
Sbjct: 237 GIAQRLFDEMP----EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHR------DTVAWN 286

Query: 229 SLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI-----------NKDVVL 264
           ++++ + +   +  AL++F+             L G+  +G++           NKD + 
Sbjct: 287 TMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAIS 346

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +++  Y   G     + L   M+  G KPD+     VIS C+    +  G      MV
Sbjct: 347 WNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGK-----MV 397

Query: 325 HDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           H + ++ G EH     S L+ +  + G + +A ++   +L R         W A+++
Sbjct: 398 HLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQR-----DTVTWNAMIA 449



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 20/148 (13%)

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L+  Y +CG V +A ++FN    R+    +++VV W +M+  Y RNG  K   +L++ 
Sbjct: 100 AALLTGYARCGRVAEARELFN----RIP---DRNVVSWNAMVSGYARNGMVKRARELFDM 152

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVDLLCR 345
           M       D+V+++T+IS       V+   E F+ M       P P    C  L+     
Sbjct: 153 MPWR----DDVSWLTMISGYIKRKHVREARELFDSM-------PSPPTSVCNALLSGYVE 201

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWG 373
            G +  A  L  +M  R   S +V + G
Sbjct: 202 LGYMRAAEVLFGQMQTRNPVSWNVMITG 229



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 118/281 (41%), Gaps = 35/281 (12%)

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           VF  +  I+ + +   +  A  +FDE+  +N    N ++SG    ++ A   ++   MP 
Sbjct: 34  VFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPV 93

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
                +  + +ALL   A        R++   +  +      +V   ++++  Y + G+V
Sbjct: 94  ----RNSVSWAALLTGYARCGRVAEARELFNRIPDR------NVVSWNAMVSGYARNGMV 143

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +A ++F++   R       D V W +M+  Y +  + +E  +L+++M    + P  V  
Sbjct: 144 KRARELFDMMPWR-------DDVSWLTMISGYIKRKHVREARELFDSM---PSPPTSVCN 193

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
             +      +G V+LG      ++        P  ++ ++    RAG +  A +L +EM 
Sbjct: 194 ALL------SGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMP 247

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           ++   S +  M G L +   D         AA K  +  PH
Sbjct: 248 EKDVLSRTAIMRGYLQNGSVD---------AAWKVFKDMPH 279


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 222/396 (56%), Gaps = 15/396 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I++  +NG+   A      M   G   ++  L + L A + +   + GKQ+
Sbjct: 342 RNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQI 401

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A   ++G +  +F+ +ALID+YAK   +  A+ +FD +  K+ V  N L+ GY ++   
Sbjct: 402 HAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPWS 460

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L + + ++G++YD  +    L AC  LS+ + G+++H  ++R+   L N  F+ +
Sbjct: 461 FESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRL--LSNHPFLAN 518

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+ +Y K G++  A ++FN    R++    KDV  W +M+  YG +G       L++ M
Sbjct: 519 TLLGLYTKGGMLDTASKIFN----RIK---EKDVASWNNMIMGYGMHGQIDAAFHLFDLM 571

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G   D V+++ V+S CSH G V+ G +YF  M+    LEP   HY+C+VDLL R+G+
Sbjct: 572 KDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQ-NLEPQQMHYACMVDLLGRSGQ 630

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L ++ ++I +M    H +S V  WGALL AC   G  EL + AA    EL P + G Y +
Sbjct: 631 LTESVEIILDM--PFHANSDV--WGALLGACRIHGNIELAQYAADHLFELKPEHSGYYSV 686

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           L N+YA+   W+E  ++R LMK + ++K+   SW++
Sbjct: 687 LRNMYAEAGRWNEAHKIRTLMKSRKVQKNPAYSWVQ 722



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 200/471 (42%), Gaps = 65/471 (13%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +HA    +G L    +   + L+  Y  C H    G        +  R+ + +N ++S F
Sbjct: 98  LHAAALRSGHL--ADVFAGNTLVAFYAACGHA---GDARRVFDEMPARDVVSWNSLVSSF 152

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             N     A +    M   G+ ++  +L S + A    ++  FG  V   V K+G  S V
Sbjct: 153 LANKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIV 212

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
            +G+AL+D+Y K   +  +  +F+ +P +N V  N+ +  +  A L+   L L R M   
Sbjct: 213 NLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSER 272

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G      TLS+LL A   L   + GR+VH Y I++   L  D+F+ +SL++MY K G + 
Sbjct: 273 GFMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMEL--DIFVANSLVDMYAKFGSLE 330

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           KA  VF     ++E    ++VV W +M+    +NG   E   L   M  +G  P+ +  V
Sbjct: 331 KACAVF----EKIE---VRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLV 383

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA--------- 352
            ++ ACS    +K G +   W +    L       + L+D+  + G+L  A         
Sbjct: 384 NLLPACSRMASLKTGKQIHAWSIRT-GLMFDLFISNALIDMYAKCGQLRLAQSIFDLSEK 442

Query: 353 ----------------W-----KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
                           W      L  ++   G    ++S  GA L+AC +   F+ GK  
Sbjct: 443 DDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGA-LTACTNLSSFKQGK-- 499

Query: 392 AQKALELDPHNVGIYVMLSN----------LYAKFCMWDEIGQLRELMKEK 432
                  + H V +  +LSN          LY K  M D   ++   +KEK
Sbjct: 500 -------EIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEK 543



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 133/281 (47%), Gaps = 31/281 (11%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G ++ A   +SG L+ VF G+ L+  YA      DA  +FDE+P ++ V  N+L+S +  
Sbjct: 95  GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLA 154

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR----KCCNL 220
            K++    + +  M   G+  +  +L +++ AC       FG  VH  +++       NL
Sbjct: 155 NKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNL 214

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
           GN      +L++MYGK G V  +++VF       EG   ++ V W S +G +   G + +
Sbjct: 215 GN------ALVDMYGKFGHVEASMKVF-------EGMPERNEVSWNSAIGCFLNAGLYGD 261

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE----HY 336
           V+ L+  M   G  P  +   +++ A    G   LG E     VH Y ++   E      
Sbjct: 262 VLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGRE-----VHGYSIKRAMELDIFVA 316

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + LVD+  + G L+KA  +  ++  R     +V  W A+++
Sbjct: 317 NSLVDMYAKFGSLEKACAVFEKIEVR-----NVVSWNAMIA 352



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 151/365 (41%), Gaps = 57/365 (15%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA    TGL+    I   + L+  Y  C   +    L   +  L+ ++ + +N +I  
Sbjct: 400 QIHAWSIRTGLMFDLFI--SNALIDMYAKCGQLR----LAQSIFDLSEKDDVSYNTLILG 453

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + ++     +L  F  +   GI  D  +   +LTA T++   + GK++   + +    + 
Sbjct: 454 YSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNH 513

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            F+ + L+ LY K  ++  A  +F+ I  K+    N ++ GY           L  LM  
Sbjct: 514 PFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKD 573

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+ YDH +  A+L  C+     E G++  ++M+ +  NL       + ++++ G+ G +
Sbjct: 574 HGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQ--NLEPQQMHYACMVDLLGRSGQL 631

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
           T+++++       L+   + +  +W ++LG                              
Sbjct: 632 TESVEII------LDMPFHANSDVWGALLG------------------------------ 655

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---YSCLVDLLCRAGELDKAWKLIN 357
                AC   G ++L  +Y      D+  E  PEH   YS L ++   AG  ++A K+  
Sbjct: 656 -----ACRIHGNIELA-QY----AADHLFELKPEHSGYYSVLRNMYAEAGRWNEAHKIRT 705

Query: 358 EMLDR 362
            M  R
Sbjct: 706 LMKSR 710


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 217/395 (54%), Gaps = 15/395 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I+ +   G    AL  F  M   G   +   + +  +      D   G++ +A V+
Sbjct: 178 WNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVS 237

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           +   L +V V +AL+++Y K   I +A   FD +P ++ V  + +++GY         LE
Sbjct: 238 EED-LQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLE 296

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M A     +  TL  +L ACA L + E G Q+ +Y+  +   L +  ++ S+LI+M
Sbjct: 297 LFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTS--YLGSALIDM 354

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V +A  VF    HR+E ++   V+ W SM+     NG+ ++ I LY  M+ +G 
Sbjct: 355 YTKCGHVARARDVF----HRMEQKV---VIAWNSMIRGLALNGFAEDAIALYGEMVGDGV 407

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK-LEPGPEHYSCLVDLLCRAGELDKA 352
           +P+E+ F+ +++AC+H G V  G+ +F+ M  + +   P  EH +C+VDLLC++G L +A
Sbjct: 408 QPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEA 467

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
           +K I +M        +  +W  LLSAC      EL KLAA K + L+P++  IYV+LSN+
Sbjct: 468 YKFICDM----EVEPNAVIWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNI 523

Query: 413 YAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           YA   +W ++ ++R+LM+ K L+K    SWIE+ G
Sbjct: 524 YADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDG 558



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 126/286 (44%), Gaps = 42/286 (14%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAK------------------------LLL---- 136
           G Q   H    G L  VFV +AL+D YAK                        L++    
Sbjct: 97  GTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLIIGYSR 156

Query: 137 ---IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              + +A  +FD +P K S   N++++ Y     +   L L   M   G   +  T++ +
Sbjct: 157 SGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTV 216

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
              CA     E GR+  A++  +  +L N V + ++L+EMY KC  + +A + F+    R
Sbjct: 217 FSICAKTGDLETGRRAKAWVSEE--DLQN-VIVHTALMEMYVKCRAIDEARREFDRMPRR 273

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  DVV W++M+  Y  NG   E ++L+E M     KP+EV  V V+SAC+  G  
Sbjct: 274 -------DVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 326

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           +LG E     +    L       S L+D+  + G + +A  + + M
Sbjct: 327 ELG-EQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRM 371



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 124/297 (41%), Gaps = 35/297 (11%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD +P   +    A +S   +  L    +E V  +   G       +  +L++CA 
Sbjct: 31  ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCAL 90

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN----------- 248
            +A+  G Q H + + +   +  DVF+Q++L++ Y K G +  A+  F            
Sbjct: 91  SAASCQGTQTHCHALVR--GMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMN 148

Query: 249 --LAGHRLEGEI-----------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
             + G+   G++            K    W SM+  Y   G F+E + L++ ML  G  P
Sbjct: 149 CLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASP 208

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           + +   TV S C+ TG ++ G     W V +  L+    H + L+++  +   +D+A + 
Sbjct: 209 NAITITTVFSICAKTGDLETGRRAKAW-VSEEDLQNVIVH-TALMEMYVKCRAIDEARRE 266

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKF--ELGKLAAQKALELDPHNVGIYVMLS 410
            + M  R      V  W  +++     G+    L      KA    P+ V +  +LS
Sbjct: 267 FDRMPRR-----DVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLS 318



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 104/254 (40%), Gaps = 9/254 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I  + LM  Y  CR    +         +  R+ + ++ +I+ +  NG P  +L+ F  
Sbjct: 244 VIVHTALMEMYVKCR---AIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFER 300

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M       +   L   L+A   +     G+Q+ +++       + ++GSALID+Y K   
Sbjct: 301 MKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGH 360

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A  +F  +  K  +  N+++ G          + L   M   G+  +  T  ALL A
Sbjct: 361 VARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTA 420

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C      + G      M +   +    V   + ++++  K G + +A +         + 
Sbjct: 421 CTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFI------CDM 474

Query: 257 EINKDVVLWTSMLG 270
           E+  + V+WT++L 
Sbjct: 475 EVEPNAVIWTTLLS 488


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 134/428 (31%), Positives = 228/428 (53%), Gaps = 17/428 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I QS L+  ++ C   ++   L      +  R+ + +N +I  +   G    + + F  
Sbjct: 133 LIVQSALLDLHSKCGKMEDASYL---FGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRS 189

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D +   S L AS    D     Q+   + + G+ S + +  +LID YAK   
Sbjct: 190 MMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAKCES 249

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYC-EAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
           +  A  ++  +P+K+ +   AL++GY  ++   +  L+L + +  + +  D   L ++  
Sbjct: 250 LASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFN 309

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLE 255
            CA +S+   GRQ+HA  ++  C    DV M ++LI+MY K G +  A + FN      E
Sbjct: 310 ICANISSLSVGRQIHALALK--CKPTYDVAMGNALIDMYAKSGEIKDANRAFN------E 361

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL 315
            E  K+V+ WTS++  YG +G+  E I L++ M   G KP+++ F++++ AC+H G    
Sbjct: 362 ME-EKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCGLTGE 420

Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
           G E F  M+  Y + P  EH+SC+VDL  R G L++A+ LIN+M    +   + S+WGA+
Sbjct: 421 GWECFNNMISKYNILPRAEHFSCMVDLFARGGLLEEAYNLINKM----NIKPNASLWGAI 476

Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
           L AC+  G   L + AA    ++DP N   YV+L+++YA    WD   ++R+LM+E+ LK
Sbjct: 477 LGACYIYGNMPLAEEAAIHLFKMDPENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNLK 536

Query: 436 KDVGCSWI 443
           K  G S+I
Sbjct: 537 KAPGYSFI 544



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
           SL      K  + G  +   +  +G+ S++ + + LI  Y+KL     A  +FD +P + 
Sbjct: 3   SLQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERT 62

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  +A +SGY +   +   L +   M   G   + FT  ++LRAC GL   + G Q+  
Sbjct: 63  VVSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQG 122

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            + +      +++ +QS+L++++ KCG +  A  +F +   R       DVV W +++G 
Sbjct: 123 CLEKS--RFASNLIVQSALLDLHSKCGKMEDASYLFGMMEER-------DVVSWNAIIGA 173

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
           Y   G+  +  +++ +M+  G  PD   F +V+ A      V
Sbjct: 174 YAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDV 215



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 166/370 (44%), Gaps = 49/370 (13%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R  + ++  IS + +NG    AL  F  M   G   + +   S L A T ++  + G Q+
Sbjct: 61  RTVVSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQI 120

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           Q  + KS + S++ V SAL+DL++K   + DA  +F  +  ++ V  NA++  Y      
Sbjct: 121 QGCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFS 180

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
                + R M   G+  D FT  ++L+A    S      Q+H  +I+     G+ + +  
Sbjct: 181 GDSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQ--LGYGSHISLSG 238

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN-GYFKEVIKLYEA 287
           SLI+ Y KC  +  A  ++       +    KD++  T+++  Y R+  Y  + + L++ 
Sbjct: 239 SLIDAYAKCESLASAHCLY-------KSMPMKDMISCTALMTGYARDSNYSSKALDLFKE 291

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLL 343
           +     K D+V   ++ + C++   + +G +     +H   L+  P +     + L+D+ 
Sbjct: 292 IQQMHMKIDDVILCSMFNICANISSLSVGRQ-----IHALALKCKPTYDVAMGNALIDMY 346

Query: 344 CRAGELDKAWKLINEMLDR---------------GHGSSSVSMWG--------------- 373
            ++GE+  A +  NEM ++               GHG  +++++                
Sbjct: 347 AKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFL 406

Query: 374 ALLSACHDCG 383
           +LL AC+ CG
Sbjct: 407 SLLFACNHCG 416


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 136/414 (32%), Positives = 218/414 (52%), Gaps = 17/414 (4%)

Query: 37  GTLTNCLKFL---NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G + +C K L   +  + +P NV+I+   +N     A+  F  +   G+   ++   S L
Sbjct: 451 GDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSIL 510

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSS-VFVGSALIDLYAKLLLIHDAELMFDEIPV-KN 151
           +  T +  +  GKQV  +  KSG+L+    VG +L+  Y K  +  DA  +  E+P  KN
Sbjct: 511 SGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKN 570

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V   A++SGY +       L     M +  +  D  T +++L+AC+ ++A   G+++H 
Sbjct: 571 LVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHG 630

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            +I+     G+     S++I+MY KCG +  + + F       E +  +D+ LW SM+  
Sbjct: 631 LIIKS--GFGSYKTATSAIIDMYSKCGDIISSFEAFK------ELKSKQDITLWNSMILG 682

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           + +NGY  E + L++ M  +  K DEV F+ V+ AC+H G +  G  YF+ M   Y + P
Sbjct: 683 FAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYGIMP 742

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
             +HY+C +DLL R G L +A ++INE+  R  G     +W   L+AC      E G++A
Sbjct: 743 RVDHYACFIDLLGRGGHLQEAQEVINELPFRPDG----VIWATYLAACRMHKDEERGEIA 798

Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A++ +EL+P N   YV+LSN+YA    W E    RE M+EKG  K  GCSWI V
Sbjct: 799 AKELVELEPQNSSTYVLLSNMYAAAGNWVEAKMAREAMREKGATKFPGCSWITV 852



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 164/329 (49%), Gaps = 15/329 (4%)

Query: 36  LGTLTNCLKFLN----PRNPLPFNVVISDFCR-NGSPLYALKTFSFMHVHGIFLDTYALC 90
           LG L +    L+    P + + +N VIS + + +G        +  M   G++       
Sbjct: 145 LGRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFA 204

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S L+A+ +      G+QV A   + G  ++VFVGS+LI+LYAK   I DA L+FD    K
Sbjct: 205 SMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEK 264

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           N V  NA+L+G    +     +++   M  LGL+ D FT  ++L ACA L +   GRQV 
Sbjct: 265 NVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQ 324

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
              I+ C  +   +F+ ++ ++M+ K G +  A  +FNL  +       KD V W ++L 
Sbjct: 325 CVTIKNC--MDASLFVANATLDMHSKFGAIDDAKTLFNLITY-------KDTVSWNALLV 375

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
               N   +E I + + M ++G  PDEV+F TVI+ACS+    + G +    +   + + 
Sbjct: 376 GLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETG-KQIHCLAMKHSIC 434

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEM 359
                 S L+D   + G+++   K++ ++
Sbjct: 435 SNHAVGSSLIDFYSKHGDVESCRKVLAQV 463



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 160/343 (46%), Gaps = 23/343 (6%)

Query: 38  TLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAST 97
           TL N + +   ++ + +N ++     N     A+     M++ G+  D  +  + + A +
Sbjct: 357 TLFNLITY---KDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACS 413

Query: 98  SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANA 157
           +++    GKQ+     K    S+  VGS+LID Y+K   +     +  ++   + V  N 
Sbjct: 414 NIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNV 473

Query: 158 LLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           L++G  +       ++L + +   GL    FT S++L  C GL ++  G+QVH Y + K 
Sbjct: 474 LIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTL-KS 532

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
             L +D  +  SL+  Y K  +   A ++       +E   +K++V WT+++  Y +NGY
Sbjct: 533 GFLNDDTSVGVSLVGTYLKARMPEDANKLL------IEMPDHKNLVEWTAIVSGYAQNGY 586

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY- 336
             + +  +  M      PDEV F +++ ACS    +  G E     +H   ++ G   Y 
Sbjct: 587 SYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKE-----IHGLIIKSGFGSYK 641

Query: 337 ---SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
              S ++D+  + G++  +++   E+  +      +++W +++
Sbjct: 642 TATSAIIDMYSKCGDIISSFEAFKELKSK----QDITLWNSMI 680



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 121/289 (41%), Gaps = 56/289 (19%)

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           +  A A+L  +  A+         R     G+  D F L+A L AC+ L A   G+Q H 
Sbjct: 5   TTSATAVLDAFVRAR---------RCSAGGGVRPDQFDLAATLSACSRLGALVSGKQAHC 55

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLG 270
              ++   LG+  F  ++L+ MY +CG V  A +VF        G I+  D V W SM+ 
Sbjct: 56  DAEKR--GLGSGAFCAAALVNMYARCGRVGDARRVF--------GGISLPDTVCWASMIS 105

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM------- 323
            Y R G F+E + L+  M   G+ PD V  V V+ A +  G+++        M       
Sbjct: 106 GYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALGRLEDARTLLHRMPAPSSTV 165

Query: 324 -----VHDYKLEPGPEH--YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
                +  Y  + G EH  +    D+ C        W L            + S + ++L
Sbjct: 166 AWNAVISGYAQQSGIEHEVFGLYKDMRC--------WGLW----------PTRSTFASML 207

Query: 377 SACHDCGKFELGKLAAQKALE--LDPHNVGIYVMLSNLYAKF-CMWDEI 422
           SA  +   F  G+     A+   LD  NV +   L NLYAK  C+ D I
Sbjct: 208 SAAANATAFIEGRQVHAAAVRHGLDA-NVFVGSSLINLYAKCGCIGDAI 255



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 116/298 (38%), Gaps = 50/298 (16%)

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G+  D + L ++L+A + +     GKQ      K G  S  F  +AL+++YA+   + DA
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +F  I + ++VC  +++SGY  A  +   + L   M  +G   D  T  A++ A   L
Sbjct: 86  RRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL 145

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
              E  R +                                          HR+      
Sbjct: 146 GRLEDARTLL-----------------------------------------HRMPAP--S 162

Query: 261 DVVLWTSMLGVYG-RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
             V W +++  Y  ++G   EV  LY+ M   G  P    F +++SA ++      G + 
Sbjct: 163 STVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQV 222

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
               V  + L+      S L++L  + G +  A  + +       G  +V MW A+L+
Sbjct: 223 HAAAVR-HGLDANVFVGSSLINLYAKCGCIGDAILVFD-----CSGEKNVVMWNAMLN 274


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 139/415 (33%), Positives = 209/415 (50%), Gaps = 18/415 (4%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGS-----PLYALKTFSFMHVHGIFLDTYALC 90
           LG      +    +N + +N +I+ F +           ALK FS M   GI    +   
Sbjct: 264 LGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFS 323

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
           S +     ++   +GKQ+ AH+ K    S  F+GS LI+LY+ L    D    F+  P  
Sbjct: 324 SIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKL 383

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V    +++GY +   +   L L   + A G   D F ++ +L ACA ++A   G QVH
Sbjct: 384 DIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVH 443

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            Y ++    +G    +Q+S I MY K G +  A   F       E   N DVV W+ M+ 
Sbjct: 444 GYAVK--TGIGTLAIVQNSQISMYAKSGNLDSAKITF-------EEIKNPDVVSWSVMIC 494

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
              ++G+ K+ I L+E M   G  P+++ F+ V++ACSH G V+ G+ Y+E M  DY ++
Sbjct: 495 SNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMK 554

Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
              +H +C+VDLL RAG L  A   I   L+ G G   V MW  LLS C        GK 
Sbjct: 555 INVKHCTCIVDLLSRAGRLLDAKNFI---LNSGFGDHPV-MWRTLLSGCRIYKDIVTGKH 610

Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            A+K +ELDP     YV+L N+Y    +     ++RELMK++G++K+ G SWIEV
Sbjct: 611 VAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEV 665



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 168/366 (45%), Gaps = 38/366 (10%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G        ++ R+ + +N++IS +   G    A+  FS   +  + LD ++    L+A
Sbjct: 60  MGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSA 119

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
              +KD   GK +       G    VF+ + LID+Y K   I  A L+F+     ++V  
Sbjct: 120 CGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSW 179

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC--AGLSAAEFGRQVHAYM 213
           N+L++GY     +   L+L+  M   GL  + FTL + L++C     +   +G+ +H Y 
Sbjct: 180 NSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYT 239

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           +++  +L  D+ + ++L++MY K G +  A+Q+F  +        N++VV++ +M+  + 
Sbjct: 240 VKQGLDL--DIVVGTALLDMYAKTGYLGDAIQLFRTSP-------NQNVVMYNAMIAGFI 290

Query: 274 RNGYFK-----EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW--MVH- 325
           +          E +KL+  M   G KP +  F ++I  C+H       IE FE+   +H 
Sbjct: 291 QTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNH-------IEAFEYGKQIHA 343

Query: 326 ---DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM--LDRGHGSSSVSMWGALLSACH 380
               + ++      S L++L    G  +   K  N    LD       +  W  +++   
Sbjct: 344 HICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLD-------IVSWTTMIAGYA 396

Query: 381 DCGKFE 386
             G+FE
Sbjct: 397 QNGQFE 402



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 135/301 (44%), Gaps = 25/301 (8%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           LD+ A    +  S+    +  GK   AH+ K+ +   +F+ +  ++LY+K   + +A+ +
Sbjct: 7   LDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKL 66

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           FD +  ++ +  N L+SGY     +   + L        L  D F+ + +L AC  +   
Sbjct: 67  FDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDF 126

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
             G+ +H   I   C LG  VF+ + LI+MY KC  +  A  +F       E     D V
Sbjct: 127 ALGKVIHGLAI--VCGLGQQVFLTNLLIDMYCKCERIDHARLLF-------ESSDELDNV 177

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC--SHTGQVKLGIEYFE 321
            W S++  Y R G ++E++KL   M   G + +     + + +C  +    V  G     
Sbjct: 178 SWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYG----- 232

Query: 322 WMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
             +H Y ++ G +      + L+D+  + G L  A +L      R   + +V M+ A+++
Sbjct: 233 KTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLF-----RTSPNQNVVMYNAMIA 287

Query: 378 A 378
            
Sbjct: 288 G 288


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 131/413 (31%), Positives = 213/413 (51%), Gaps = 15/413 (3%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G        ++ ++ + +N +IS + +      A+  F  M   G   +  +L S L A
Sbjct: 178 MGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGA 237

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
              + D + G  V+  V ++    + F+GSALI +Y K   +  A  +FD +  K+ V  
Sbjct: 238 CGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTW 297

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           NA+++GY +  +    ++L + M       D  TL  +L ACA + A + G+QV  Y   
Sbjct: 298 NAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASE 357

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
           +     +DV++ ++L++MY KCG +  A +VF        G  NK+ V W +M+     +
Sbjct: 358 R--GFQDDVYVGTALVDMYAKCGSLDNAFRVF-------YGMPNKNEVSWNAMISALAFH 408

Query: 276 GYFKEVIKLYEAMLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           G  +E + L+++M+  G    P+++ FV V+SAC H G V  G   F  M   + L P  
Sbjct: 409 GQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKI 468

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHYSC+VDL  RAG L++AW  +  M ++        + GALL AC      ++ +   +
Sbjct: 469 EHYSCMVDLFSRAGHLEEAWDFVMTMPEK----PDEVILGALLGACQKRKNIDISERVMK 524

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
             LEL+P N G YV+ S LYA    WD+  ++R LMK+KG+ K  GCSWI++ 
Sbjct: 525 LLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDIN 577



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 174/357 (48%), Gaps = 45/357 (12%)

Query: 54  FNVVISDFCR--NGSPLYALKTFSFMHVHGIFLD--TYAL----CSSLTASTSVKDARFG 105
           FNV+I       N S L AL+ +S M   G+  +  TY      CS+L A   V++ R G
Sbjct: 94  FNVMIRGLSTAWNKSSL-ALEFYSRMKFLGLKPNNLTYPFLFIACSNLLA---VENGRMG 149

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
                 V + G      V  +LI +YA+   + DA  +FDEI  K+ V  N+++SGY + 
Sbjct: 150 ---HCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKM 206

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +     + L R M   G   +  +L ++L AC  L   + G  V  +++     L  + F
Sbjct: 207 RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL--NYF 264

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           M S+LI MYGKCG +  A ++F       +    KD V W +M+  Y +NG  +E IKL+
Sbjct: 265 MGSALIHMYGKCGDLVSARRIF-------DSMKKKDKVTWNAMITGYAQNGMSEEAIKLF 317

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
           + M M+ T PD++  + ++SAC+  G + LG +     V  Y  E G +      + LVD
Sbjct: 318 QDMRMSSTAPDQITLIGILSACASIGALDLGKQ-----VEIYASERGFQDDVYVGTALVD 372

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +  + G LD A+++   M ++   S     W A++SA    G+       AQ+AL L
Sbjct: 373 MYAKCGSLDNAFRVFYGMPNKNEVS-----WNAMISALAFHGQ-------AQEALAL 417


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 128/397 (32%), Positives = 218/397 (54%), Gaps = 14/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +    + + +N   L AL+    + + G+ +D   + S L A   +      K++
Sbjct: 325 KDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEI 384

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +  + G LS   + + +ID+Y +  +I  A  +F+ I  K+ V   +++S Y    L 
Sbjct: 385 HGYTIRGG-LSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLA 443

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LE+   M   GL+ D+ TL ++L A   LS  + G+++H ++IRK   L   +   +
Sbjct: 444 NKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSI--SN 501

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY +CG V  A ++F           N++++LWT+M+  YG +GY +  ++L+  M
Sbjct: 502 TLVDMYARCGSVEDAYKIFTCTK-------NRNLILWTAMISAYGMHGYGEAAVELFMRM 554

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                 PD + F+ ++ ACSH+G V  G  + E M  +Y+LEP PEHY+CLVDLL R   
Sbjct: 555 KDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNC 614

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A++++  M        +  +W ALL AC      E+G++AA+K LELD  N G YV+
Sbjct: 615 LEEAYQIVKSM----QNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVL 670

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +SN++A    W ++ ++R  MK  GL K+ GCSWIEV
Sbjct: 671 VSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEV 707



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 175/333 (52%), Gaps = 16/333 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  ++ + +N +++ F +NG    AL+ F  +    +  D  ++ S + AS  +     G
Sbjct: 221 LEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++ A+  K+G+ S++ VG+ LID+YAK   +      FD +  K+ +      +GY + 
Sbjct: 281 KEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQN 340

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           K +   LEL+R +   G+D D   + ++L AC GL+     +++H Y IR      +D  
Sbjct: 341 KCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGL---SDPV 397

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q+++I++YG+CG++  A+++F       E    KDVV WTSM+  Y  NG   + ++++
Sbjct: 398 LQNTIIDVYGECGIIDYAVRIF-------ESIECKDVVSWTSMISCYVHNGLANKALEVF 450

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
            +M   G +PD V  V+++SA      +K G E   +++    +  G    + LVD+  R
Sbjct: 451 SSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSIS-NTLVDMYAR 509

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            G ++ A+K+     +R     ++ +W A++SA
Sbjct: 510 CGSVEDAYKIFTCTKNR-----NLILWTAMISA 537



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 147/288 (51%), Gaps = 15/288 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ R+   +N ++  +  NG  L AL+ +  M   G+  D+Y     L A   V+D   G
Sbjct: 18  MSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCG 77

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA-NALLSGYCE 164
            ++     K G  S VFV ++L+ LYAK   I+ A  +FD + V+N V + N+++S Y  
Sbjct: 78  AEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSG 137

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             +    L L   M   G+  + +T +A L+AC   S  + G Q+HA +++    L  DV
Sbjct: 138 NGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVL--DV 195

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           ++ ++L+ MY + G + +A  +F      LEG   KD+V W SML  + +NG + E ++ 
Sbjct: 196 YVANALVAMYVRFGKMPEAAVIFG----NLEG---KDIVTWNSMLTGFIQNGLYSEALEF 248

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
           +  +     KPD+V+ +++I A    G +  G E     +H Y ++ G
Sbjct: 249 FYDLQNADLKPDQVSIISIIVASGRLGYLLNGKE-----IHAYAIKNG 291



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 178/387 (45%), Gaps = 34/387 (8%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           + + +N +IS +  NG    AL  FS M   G+  +TY   ++L A       + G Q+ 
Sbjct: 124 DVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIH 183

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           A + KSG +  V+V +AL+ +Y +   + +A ++F  +  K+ V  N++L+G+ +  L++
Sbjct: 184 AAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYS 243

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             LE    +    L  D  ++ +++ A   L     G+++HAY I+      +++ + ++
Sbjct: 244 EALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKN--GFDSNILVGNT 301

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           LI+MY KC  ++   + F+L  H       KD++ WT+    Y +N  + + ++L   + 
Sbjct: 302 LIDMYAKCCCMSYGGRAFDLMAH-------KDLISWTTAAAGYAQNKCYLQALELLRQLQ 354

Query: 290 MNGTKPDEVAFVTVISACSH---TGQVKLGIEYFEWMVHDYKLEPG---PEHYSCLVDLL 343
           M G   D     +++ AC      G++K         +H Y +  G   P   + ++D+ 
Sbjct: 355 MEGMDVDATMIGSILLACRGLNCLGKIK--------EIHGYTIRGGLSDPVLQNTIIDVY 406

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG--KFELGKLAAQKALELDPH 401
              G +D A ++   +         V  W +++S     G     L   ++ K   L+P 
Sbjct: 407 GECGIIDYAVRIFESI-----ECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPD 461

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLREL 428
               YV L ++ +  C    + + +E+
Sbjct: 462 ----YVTLVSILSAVCSLSTLKKGKEI 484



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 8/189 (4%)

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y K   + DAE++FD++  ++    NA++ GY       G LE+ R M  LG+ +D +T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
              LL+AC  +     G ++H   I+  C+  + VF+ +SL+ +Y KC  +  A ++F+ 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCD--SFVFVVNSLVALYAKCNDINGARKLFD- 117

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
              R+   +  DVV W S++  Y  NG   E + L+  ML  G   +   F   + AC  
Sbjct: 118 ---RM--YVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACED 172

Query: 310 TGQVKLGIE 318
           +  +KLG++
Sbjct: 173 SSFIKLGMQ 181


>gi|116310930|emb|CAH67868.1| B0403H10-OSIGBa0105A11.20 [Oryza sativa Indica Group]
          Length = 804

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 134/434 (30%), Positives = 239/434 (55%), Gaps = 22/434 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I  + L++ Y+ C    N+ T  +    L  ++ + +N +++ F +N   L  L     
Sbjct: 352 VILGNALVVMYSRC---GNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYE 408

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G   D+  L + L+AS++  D + GKQ   ++ + G +    + S LID+YAK   
Sbjct: 409 MQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHG-IEGEGLESYLIDMYAKSGR 467

Query: 137 IHDAELMFDEI--PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
           +  A+ +FD      ++ V  NA+++GY ++      + + R M   GL+    TL+++L
Sbjct: 468 VEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVL 527

Query: 195 RACAGLSAAEF-GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
            AC  +    + G+Q+H + +R+C  L  +VF+ ++LI+MY KCG +T A  VF      
Sbjct: 528 PACDPVGGGVYSGKQIHCFAVRRC--LDTNVFVGTALIDMYSKCGEITTAENVFG----- 580

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
             G   K  V +T+M+   G++G+ K+ + L+ +M   G KPD V F++ ISAC+++G V
Sbjct: 581 --GMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLV 638

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G+  +  M   + +   P+H+ C+ DLL +AG +++A++ I  + + G+    V++WG
Sbjct: 639 DEGLALYRSM-DSFGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGN---FVAIWG 694

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPH--NVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           +LL++C   GK EL KL  +K L+++    + G  V+LS + A    W+    LR+ M+ 
Sbjct: 695 SLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRA 754

Query: 432 KGLKKDVGCSWIEV 445
           +GLKK+ G SWI+V
Sbjct: 755 RGLKKEAGSSWIKV 768



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 172/370 (46%), Gaps = 25/370 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           +N   +N +I+ + +NG    A+  FS  +    + LD     S+LTA++  +D   G+Q
Sbjct: 278 KNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQ 337

Query: 108 VQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           +  ++ K    +  V +G+AL+ +Y++   +  A  +FD +P K+ V  N +++ + +  
Sbjct: 338 LHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQND 397

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
               GL LV  M   G   D  TL+A+L A +     + G+Q H Y+IR          +
Sbjct: 398 FDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEG---L 454

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           +S LI+MY K G V  A +VF+   +       +D V W +M+  Y ++G  ++ I ++ 
Sbjct: 455 ESYLIDMYAKSGRVEMAQRVFDSFKN-----AKRDEVTWNAMIAGYTQSGQPEKAILVFR 509

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK----LEPGPEHYSCLVDL 342
           AML  G +P  V   +V+ AC   G    G  Y    +H +     L+      + L+D+
Sbjct: 510 AMLEAGLEPTSVTLASVLPACDPVG----GGVYSGKQIHCFAVRRCLDTNVFVGTALIDM 565

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDP 400
             + GE+  A  +   M     G S+V+ +  ++S    H  GK  L    + +   L P
Sbjct: 566 YSKCGEITTAENVFGGMT----GKSTVT-YTTMISGLGQHGFGKKALALFNSMQEKGLKP 620

Query: 401 HNVGIYVMLS 410
             V     +S
Sbjct: 621 DAVTFLSAIS 630



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 195/415 (46%), Gaps = 21/415 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPY-TTCRHKK-NLGTLTNCLKFLNPRNPLPFNVVIS 59
           VHAH       L    + ++ L+  Y ++ R+++  +  +      +  RN + +N +  
Sbjct: 127 VHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFG 186

Query: 60  DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG--W 117
            + + G P  AL+ F  M   G F  T     ++  +    D  +  Q+   + K G  +
Sbjct: 187 WYVKTGRPQEALELFVRMLEDG-FRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEY 245

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV-R 176
           ++ +FV S+ ID++++   +  A  +FD    KN+   N +++GY +   ++  ++L  +
Sbjct: 246 INDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSK 305

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
           ++ +  +  D  T  + L A +       G+Q+H Y+I K  +    V + ++L+ MY +
Sbjct: 306 ILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLI-KGMHRTLPVILGNALVVMYSR 364

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG V  A  +F+    RL     KD+V W +M+  + +N +  E + L   M  +G   D
Sbjct: 365 CGNVQTAFDLFD----RLP---EKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAAD 417

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
            V    V+SA S+TG +++G +   +++       G E Y  L+D+  ++G ++ A ++ 
Sbjct: 418 SVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESY--LIDMYAKSGRVEMAQRVF 475

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVGIYVML 409
           +   +      +   W A+++     G+ E   L  +  LE  L+P +V +  +L
Sbjct: 476 DSFKNAKRDEVT---WNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVL 527



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 154/370 (41%), Gaps = 48/370 (12%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSG--WLSSVFVGSALIDLYAKLLLIHDAEL 142
           D Y   ++LTA    +  R G+ V AH+ +       +  + ++L++LYA  +   +A +
Sbjct: 104 DHYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARV 163

Query: 143 -----MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
                +FD +P +N V  N L   Y +       LEL   M   G      +   +  A 
Sbjct: 164 DVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAA 223

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
                  +  Q++  +++      ND+F+ SS I+M+ + G V  A +VF+ A       
Sbjct: 224 VA-DDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAA------ 276

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLG 316
             K+  +W +M+  Y +NG F E I L+  +L +   P D V F++ ++A S +  V LG
Sbjct: 277 -KKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLG 335

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN------------------- 357
            +   +++            + LV +  R G +  A+ L +                   
Sbjct: 336 QQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQ 395

Query: 358 ------------EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
                       EM   G  + SV++  A+LSA  + G  ++GK A    +       G+
Sbjct: 396 NDFDLEGLLLVYEMQKSGFAADSVTL-TAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGL 454

Query: 406 YVMLSNLYAK 415
              L ++YAK
Sbjct: 455 ESYLIDMYAK 464



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 31/264 (11%)

Query: 136 LIHDAELMFDEIP-VKNSVCANALLSGYCEAKLWAGGLELVRLMPALG---LDYDHFTLS 191
           L H   L+ + +P    ++  NALL  Y +  L    L L  L+       +  DH+T S
Sbjct: 50  LDHARRLLLEALPRPPPTLLCNALLIAYADRALQEEALRLNALLNHAARPPVRSDHYTYS 109

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           A L ACA       GR VHA+M+R+  +L +   +++SL+ +Y       +A    ++  
Sbjct: 110 AALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREAR--VDVVR 167

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
              +    ++VV W ++ G Y + G  +E ++L+  ML +G +P  V+FV +  A     
Sbjct: 168 RLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADD 227

Query: 312 Q----------VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
                      VK G+EY    ++D  +       S  +D+    G++  A ++     D
Sbjct: 228 PSWPFQLYGLLVKYGVEY----INDLFV------VSSAIDMFSEFGDVQSARRV----FD 273

Query: 362 RGHGSSSVSMWGALLSACHDCGKF 385
           R     +  +W  +++     G+F
Sbjct: 274 RA-AKKNTEVWNTMITGYVQNGQF 296


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 237/448 (52%), Gaps = 24/448 (5%)

Query: 1   NVHAHQFETGLLL---ICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVV 57
            +H H  +TG  L   +C ++    +   Y        L      L+ L   + + +  +
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLID--MYAKYG------QLALALRILRRLPEDDVVSWTAM 535

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+ + ++     AL+ F  M   GI  D     S+++A   ++  R G+Q+ A    +G+
Sbjct: 536 IAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGF 595

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            + + + +ALI LYA+   I +A L F++I  KN++  N+L+SG  ++  +   L++   
Sbjct: 596 GADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVR 655

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M     + + FT  + + A A L+  + G+Q+H+ +++   +   +V   +SLI +Y K 
Sbjct: 656 MLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREV--SNSLISLYAKS 713

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G ++ A + FN    R       +V+ W +M+  Y ++G   E ++L+E M + G  P+ 
Sbjct: 714 GSISDAWREFNDMSER-------NVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNH 766

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           V FV V+SACSH G VK G++YFE M   + L P  EHY C+VDLL RAG+LD+A + I 
Sbjct: 767 VTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIK 826

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
           EM       +   +W  LLSAC      E+G+ AA   LEL+P +   YV++SN+YA   
Sbjct: 827 EMPI----PADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSR 882

Query: 418 MWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            W      R+LMK+ G+KK+ G SWIEV
Sbjct: 883 QWIHRDWSRKLMKDXGVKKEPGRSWIEV 910



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 181/391 (46%), Gaps = 31/391 (7%)

Query: 7   FETGLLLICLII---FQSR------LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVV 57
           FE G  L CL+I   F S       L+  Y+  R    L +       +N R+ + +N +
Sbjct: 277 FELGEQLHCLVIKWGFHSETYVCNGLVALYSRSR---KLISAERIFSTMNSRDGVSYNSL 333

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           IS   + G    AL+ F+ M    +  D   + S L+A  SV     G Q+ +H  K+G 
Sbjct: 334 ISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGM 393

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
            + + +  +L+DLY+K   +  A   F     +N V  N +L  Y +    +   E+ R 
Sbjct: 394 SADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQ 453

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  + FT  ++LR C  L A   G Q+H ++I+    L  +V++ S LI+MY K 
Sbjct: 454 MQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQL--NVYVCSVLIDMYAKY 511

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G +  AL++      RL  +   DVV WT+M+  Y ++  F E ++L+E M   G + D 
Sbjct: 512 GQLALALRIL----RRLPED---DVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDN 564

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKL 355
           + F + ISAC+    ++ G +        Y    G +    + L+ L  R G + +A+  
Sbjct: 565 IGFASAISACAGIRALRQGQQIH---AQSYAAGFGADLSINNALISLYARCGRIQEAYLA 621

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
             ++ D+ + S     W +L+S     G FE
Sbjct: 622 FEKIGDKNNIS-----WNSLVSGLAQSGYFE 647



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 162/326 (49%), Gaps = 23/326 (7%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS   +NG    A+  F  MH   IF   Y L S L+AST ++    G+Q+   V K G
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
           + S  +V + L+ LY++   +  AE +F  +  ++ V  N+L+SG  +       LEL  
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFT 351

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M    L  D  T+++LL ACA + A   G Q+H++ I+    +  D+ ++ SL+++Y K
Sbjct: 352 KMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK--AGMSADIILEGSLLDLYSK 409

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           C  V  A + F      L  E  +++VLW  ML  YG+     +  +++  M M G  P+
Sbjct: 410 CADVETAHKFF------LXTE-TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPN 462

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE--HYSC--LVDLLCRAGELDKA 352
           +  + +++  C+  G + LG +     +H + ++ G +   Y C  L+D+  + G+L  A
Sbjct: 463 QFTYPSILRTCTSLGALYLGEQ-----IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALA 517

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSA 378
            +++  + +       V  W A+++ 
Sbjct: 518 LRILRRLPE-----DDVVSWTAMIAG 538



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 138/312 (44%), Gaps = 19/312 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA-RFGKQ 107
           R+   +N +I  F    S       F  M   GI  + Y     L A      A  + KQ
Sbjct: 122 RSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQ 181

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V +     G+ SS  V + LIDLY+K   I  A+ +F+ I +K+ V   A++SG  +  L
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               + L   M A  +    + LS++L A   +   E G Q+H  +I+      ++ ++ 
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK--WGFHSETYVC 299

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           + L+ +Y +   +  A ++F+    R       D V + S++    + G+    ++L+  
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSR-------DGVSYNSLISGLVQQGFSDRALELFTK 352

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLL 343
           M  +  KPD +   +++SAC+  G +  G++     +H + ++ G          L+DL 
Sbjct: 353 MQRDCLKPDCITVASLLSACASVGALHKGMQ-----LHSHAIKAGMSADIILEGSLLDLY 407

Query: 344 CRAGELDKAWKL 355
            +  +++ A K 
Sbjct: 408 SKCADVETAHKF 419



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 23/263 (8%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++   ++KSG+     +  +L+D Y +    H A  +FDE   ++    N ++  +   K
Sbjct: 79  RLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQK 138

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVF 225
                  L R M A G+  + +T + +L+AC G   A  + +QVH+          +   
Sbjct: 139 SNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYY--GFDSSPL 196

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + + LI++Y K G +  A +VFN           KD+V W +M+    +NG  +E I L+
Sbjct: 197 VANLLIDLYSKNGYIESAKKVFNCI-------CMKDIVTWVAMISGLSQNGLEEEAILLF 249

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE----YFEWMVHDYKLEPGPEHYSC--L 339
             M  +   P      +V+SA +     +LG +      +W  H        E Y C  L
Sbjct: 250 CDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFH-------SETYVCNGL 302

Query: 340 VDLLCRAGELDKAWKLINEMLDR 362
           V L  R+ +L  A ++ + M  R
Sbjct: 303 VALYSRSRKLISAERIFSTMNSR 325


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 135/412 (32%), Positives = 219/412 (53%), Gaps = 14/412 (3%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G + N  K  +    ++ + +N +IS +   G+   AL+ F  M    +  D   + + +
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           +A         G+QV   +   G+ S++ + +ALIDLY+K   +  A  +F+ +P K+ +
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N L+ GY    L+   L L + M   G   +  T+ ++L ACA L A + GR +H Y+
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
            ++   + N   +++SLI+MY KCG +  A QVFN   H       K +  W +M+  + 
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILH-------KSLSSWNAMIFGFA 446

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
            +G       L+  M   G +PD++ FV ++SACSH+G + LG   F  M  DYK+ P  
Sbjct: 447 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKL 506

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHY C++DLL  +G   +A ++IN M     G     +W +LL AC   G  ELG+  A+
Sbjct: 507 EHYGCMIDLLGHSGLFKEAEEMINMMEMEPDG----VIWCSLLKACKMHGNVELGESFAE 562

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
             ++++P N G YV+LSN+YA    W+E+ + R L+ +KG+KK  GCS IE+
Sbjct: 563 NLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEI 614



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 192/418 (45%), Gaps = 58/418 (13%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           H + L    +  K +   N L +N +      +  P+ ALK +  M   G+  ++Y    
Sbjct: 80  HFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPF 139

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY-------------------- 131
            L +    K  + G+Q+  HV K G    ++V ++LI +Y                    
Sbjct: 140 VLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRD 199

Query: 132 -----------AKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
                      A    I +A+ +FDEIPVK+ V  NA++SGY E   +   LEL + M  
Sbjct: 200 VVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 259

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             +  D  T+  ++ ACA   + E GRQVH ++       G+++ + ++LI++Y KCG +
Sbjct: 260 TNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDH--GFGSNLKIVNALIDLYSKCGEL 317

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A  +F    +       KDV+ W +++G Y     +KE + L++ ML +G  P++V  
Sbjct: 318 ETACGLFERLPY-------KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 370

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDY--KLEPGPEHYS----CLVDLLCRAGELDKAWK 354
           ++++ AC+H G + +G     W +H Y  K   G  + S     L+D+  + G+++ A +
Sbjct: 371 LSILPACAHLGAIDIG----RW-IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 425

Query: 355 LINEMLDRGHGSSSVSMWGALL--SACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           + N +L +     S+S W A++   A H          +  + + + P ++    +LS
Sbjct: 426 VFNSILHK-----SLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLS 478


>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
           [Vitis vinifera]
 gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
          Length = 598

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 205/373 (54%), Gaps = 19/373 (5%)

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G+  D +A    L+   ++ D   G QV   + K G    V +G++L+D+Y K   
Sbjct: 240 MCCEGVKPDNFAFSGVLSGLAALGDGGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGS 299

Query: 137 IHDAELMFDEIPVKNSVCA-NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLR 195
           + +    F+E+ V+  VC  N + +G          LEL+  M   G+  + FTL+  L 
Sbjct: 300 LENGIKAFEEM-VERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNKFTLATALT 358

Query: 196 ACAGLSAAEFGRQVHAYMIRKCCNLGNDV--FMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           ACA L++ E G++ H   I+    LGNDV   + ++L++MY KCG +  AL+VF     R
Sbjct: 359 ACANLASLEEGKKAHGLRIK----LGNDVDVCVDNALLDMYAKCGSMGDALKVFGTVEAR 414

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                   VV WT+M+  + +NG  ++ ++++E M   G  P+ + F+ V+ ACS  G +
Sbjct: 415 -------SVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITFICVLYACSQGGLI 467

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G EYF  M  D+ + PG +HY+C+VD+L RAG + +A +LI  M  +    +SV +W 
Sbjct: 468 NEGWEYFLSMDRDHGISPGEDHYACMVDMLGRAGHIKEARELIRRMPFQ----ASVLVWQ 523

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
            LL AC   G  E G LAA++AL LD H+   YV+LSN++A    W  +G LRELM+ + 
Sbjct: 524 TLLGACRVHGDVETGLLAAKQALSLDKHDSSTYVVLSNMFADGRNWKGVGSLRELMETRD 583

Query: 434 LKKDVGCSWIEVT 446
           +KK  G SWI++ 
Sbjct: 584 VKKMPGSSWIQLN 596



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 162/378 (42%), Gaps = 56/378 (14%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D YA      A T  +D++ G+ + A + K    +S+F+ + ++++YAK   +  A  +F
Sbjct: 36  DLYATLLRRFAET--RDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLF 93

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA------ 198
           D  P +N+V  + L++G+ +    +  L L   M A G++ + FTL + L AC+      
Sbjct: 94  DHFPHRNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTLVSALHACSLYDNDS 153

Query: 199 -------GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
                           QV+A+++R       +VF+ +  +    +   + +AL+VF    
Sbjct: 154 DNNEGYYYSYYLSRLYQVYAFVVR--LGFEWNVFLMNVFMTALIRSRKLAEALEVF---- 207

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFK----EVIKLYEAMLMNGTKPDEVAFVTVISAC 307
              E    KDVV W +++      G  +    EV   +  M   G KPD  AF  V+S  
Sbjct: 208 ---EACRGKDVVSWNAVMA-----GLVQFCCGEVPGFWRRMCCEGVKPDNFAFSGVLSGL 259

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDRG 363
           +  G   +G++     VH   ++ G     C    LVD+  + G L+   K   EM++R 
Sbjct: 260 AALGDGGMGVQ-----VHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIKAFEEMVER- 313

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL--DPHNVGIYVMLSNLYAKFCMWDE 421
                V  W  + + C +CGK         +ALEL  +    G+ +    L         
Sbjct: 314 ----DVCTWNQMAAGCLNCGK-------PGRALELIEEMRRSGVRMNKFTLATALTACAN 362

Query: 422 IGQLRELMKEKGLKKDVG 439
           +  L E  K  GL+  +G
Sbjct: 363 LASLEEGKKAHGLRIKLG 380



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 106/239 (44%), Gaps = 12/239 (5%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G+L N +K       R+   +N + +     G P  AL+    M   G+ ++ + L ++L
Sbjct: 298 GSLENGIKAFEEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNKFTLATAL 357

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           TA  ++     GK+      K G    V V +AL+D+YAK   + DA  +F  +  ++ V
Sbjct: 358 TACANLASLEEGKKAHGLRIKLGNDVDVCVDNALLDMYAKCGSMGDALKVFGTVEARSVV 417

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
               ++ G+ +       LE+   M A G   ++ T   +L AC+       G +    M
Sbjct: 418 SWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITFICVLYACSQGGLINEGWEYFLSM 477

Query: 214 IRK-CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            R    + G D +  + +++M G+ G + +A ++      R+       V++W ++LG 
Sbjct: 478 DRDHGISPGEDHY--ACMVDMLGRAGHIKEARELI----RRM--PFQASVLVWQTLLGA 528



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
           +D    + LLR  A    ++ GR +HA +I+    L N +F+ + ++ MY KCG +  A 
Sbjct: 33  HDEDLYATLLRRFAETRDSQHGRALHAKLIKG--PLHNSLFLNNHILNMYAKCGHLPHAH 90

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           ++F+   HR       + V W+ ++  + ++      + L+  M   G   +E   V+ +
Sbjct: 91  KLFDHFPHR-------NAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTLVSAL 143

Query: 305 SACS 308
            ACS
Sbjct: 144 HACS 147


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 140/430 (32%), Positives = 228/430 (53%), Gaps = 44/430 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + ++ +I+ F +N     A++TF  MH  G+ +D     S+L+A  ++     GK +
Sbjct: 339 KDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLI 398

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAK---------------LL----------------LI 137
            +   K G  S + + +ALI +Y+K               LL                L+
Sbjct: 399 HSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLV 458

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
            +A+ +FD +P K+ V  ++++SGY +  L+   L L + M   G   D  TL +++ AC
Sbjct: 459 DNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISAC 518

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           A L+A E G+ VHAY+ R    L  +V + ++LI+MY KCG V  AL+VF        G 
Sbjct: 519 ARLAALEQGKWVHAYIKRN--GLTINVILGTTLIDMYMKCGCVETALEVF-------YGM 569

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
           I K +  W +++     NG  +  + ++  M      P+E+ F+ V+ AC H G V  G 
Sbjct: 570 IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQ 629

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
            +F  M+HD+K++P  +HY C+VDLL RAG+L +A     E+L+R   +  V+ WGALL 
Sbjct: 630 HHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEA----EELLNRMPMTPDVATWGALLG 685

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           AC   G  E+G+   +K +EL P + G +V+LSN+YA    WD++ ++R +M +  + K 
Sbjct: 686 ACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKI 745

Query: 438 VGCSWIEVTG 447
            GCS IE  G
Sbjct: 746 PGCSMIEANG 755



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 165/350 (47%), Gaps = 62/350 (17%)

Query: 75  SFMHVHGIFLDTYALCSSLTAS------TSVKDARFGKQVQA------------HVTKSG 116
           S ++V    ++ +++CS++T +      +SV D+     + A            H+    
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
              S+   +++I L+    L+ +A  +FDE+  K+ V  +AL++ + + +++   +    
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF--MQSSLIEMY 234
            M  +G+  D     + L ACA L     G+ +H+  ++    +G + +  +Q++LI MY
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLK----IGTESYINLQNALIYMY 421

Query: 235 GKCGLVTKALQVFN-------------LAGHR-----------LEGEINKDVVLWTSMLG 270
            KCG +  A ++F+             ++G+             +    KDVV W+SM+ 
Sbjct: 422 SKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMIS 481

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
            Y +N  F E + L++ M M+G KPDE   V+VISAC+    ++ G    +W VH Y   
Sbjct: 482 GYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG----KW-VHAYIKR 536

Query: 331 PGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            G        + L+D+  + G ++ A ++   M+++G     +S W AL+
Sbjct: 537 NGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKG-----ISTWNALI 581



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 167/392 (42%), Gaps = 69/392 (17%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           +P       + +  SP +A   +  M  + +  D Y     + A +  +     KQV  H
Sbjct: 179 MPAKASRRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNH 238

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V K G+ S V+V + LI+ ++    + DA  +F+E  V +SV  N++L+GY E       
Sbjct: 239 VLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIE------- 291

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
                                       +   E  + ++  M  +       +   +S+I
Sbjct: 292 ----------------------------IGNVEEAKHIYHQMPER------SIIASNSMI 317

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
            ++G  GLV +A ++F       +  + KD+V W++++  + +N  ++E I+ +  M   
Sbjct: 318 VLFGMRGLVVEACKLF-------DEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKI 370

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAG 347
           G   DEV  V+ +SAC++   V +G      ++H   L+ G E Y    + L+ +  + G
Sbjct: 371 GVMVDEVVAVSALSACANLLVVNMGK-----LIHSLSLKIGTESYINLQNALIYMYSKCG 425

Query: 348 ELDKAWKLINE--MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           ++  A KL +E  +LD       +  W +++S    C   +  K       E D   V  
Sbjct: 426 DIMVARKLFDEAYLLD-------LISWNSMISGYLKCNLVDNAKAIFDSMPEKDV--VSW 476

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
             M+S  YA+  ++DE   L + M+  G K D
Sbjct: 477 SSMISG-YAQNDLFDETLALFQEMQMSGFKPD 507


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 217/395 (54%), Gaps = 15/395 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +I+ +   G    AL  F  M   G   +   + +  +      D   G++ +A V+
Sbjct: 178 WNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVS 237

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           +   L +V V +AL+++Y K   I +A   FD +P ++ V  + +++GY         LE
Sbjct: 238 EED-LQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLE 296

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M A     +  TL  +L ACA L + E G Q+ +Y+  +   L +  ++ S+LI+M
Sbjct: 297 LFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTS--YLGSALIDM 354

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG V +A  VF    HR+E ++   V+ W SM+     NG+ ++ I LY  M+ +G 
Sbjct: 355 YTKCGHVARARDVF----HRMEQKV---VIAWNSMIRGLALNGFAEDAIALYGEMVGDGV 407

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK-LEPGPEHYSCLVDLLCRAGELDKA 352
           +P+E+ F+ +++AC+H G V  G+ +F+ M  + +   P  EH +C+VDLLC++G L +A
Sbjct: 408 QPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEA 467

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
           +K I +M        +  +W  LLSAC      EL KLAA K + L+P++  IYV+LSN+
Sbjct: 468 YKFICDM----EVEPNAVIWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNI 523

Query: 413 YAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           YA   +W ++ ++R+LM+ K L+K    SWIE+ G
Sbjct: 524 YADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDG 558



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 125/286 (43%), Gaps = 42/286 (14%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAK------------------------LLL---- 136
           G Q   H    G L  VFV +AL+D YAK                        L+     
Sbjct: 97  GTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLITGYSR 156

Query: 137 ---IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              + +A  +FD +P K S   N++++ Y     +   L L   M   G   +  T++ +
Sbjct: 157 SGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTV 216

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
              CA     E GR+  A++  +  +L N V + ++L+EMY KC  + +A + F+    R
Sbjct: 217 FSICAKTGDLETGRRAKAWVSEE--DLQN-VIVHTALMEMYVKCRAIDEARREFDRMPRR 273

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  DVV W++M+  Y  NG   E ++L+E M     KP+EV  V V+SAC+  G  
Sbjct: 274 -------DVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 326

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           +LG E     +    L       S L+D+  + G + +A  + + M
Sbjct: 327 ELG-EQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRM 371



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 124/297 (41%), Gaps = 35/297 (11%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD +P   +    A +S   +  L    +E V  +   G       +  +L++CA 
Sbjct: 31  ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCAL 90

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN----------- 248
            +A+  G Q H + + +   +  DVF+Q++L++ Y K G +  A+  F            
Sbjct: 91  SAASCQGTQTHCHALVR--GMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMN 148

Query: 249 --LAGHRLEGEI-----------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
             + G+   G++            K    W SM+  Y   G F+E + L++ ML  G  P
Sbjct: 149 CLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASP 208

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           + +   TV S C+ TG ++ G     W V +  L+    H + L+++  +   +D+A + 
Sbjct: 209 NAITITTVFSICAKTGDLETGRRAKAW-VSEEDLQNVIVH-TALMEMYVKCRAIDEARRE 266

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKF--ELGKLAAQKALELDPHNVGIYVMLS 410
            + M  R      V  W  +++     G+    L      KA    P+ V +  +LS
Sbjct: 267 FDRMPRR-----DVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLS 318



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 104/254 (40%), Gaps = 9/254 (3%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I  + LM  Y  CR    +         +  R+ + ++ +I+ +  NG P  +L+ F  
Sbjct: 244 VIVHTALMEMYVKCR---AIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFER 300

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M       +   L   L+A   +     G+Q+ +++       + ++GSALID+Y K   
Sbjct: 301 MKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGH 360

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A  +F  +  K  +  N+++ G          + L   M   G+  +  T  ALL A
Sbjct: 361 VARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTA 420

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C      + G      M +   +    V   + ++++  K G + +A +         + 
Sbjct: 421 CTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFI------CDM 474

Query: 257 EINKDVVLWTSMLG 270
           E+  + V+WT++L 
Sbjct: 475 EVEPNAVIWTTLLS 488


>gi|115460348|ref|NP_001053774.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|38344148|emb|CAE01824.2| OSJNBa0041A02.15 [Oryza sativa Japonica Group]
 gi|113565345|dbj|BAF15688.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|125549608|gb|EAY95430.1| hypothetical protein OsI_17272 [Oryza sativa Indica Group]
          Length = 804

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 134/434 (30%), Positives = 239/434 (55%), Gaps = 22/434 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           +I  + L++ Y+ C    N+ T  +    L  ++ + +N +++ F +N   L  L     
Sbjct: 352 VILGNALVVMYSRC---GNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYE 408

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G   D+  L + L+AS++  D + GKQ   ++ + G +    + S LID+YAK   
Sbjct: 409 MQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHG-IEGEGLESYLIDMYAKSGR 467

Query: 137 IHDAELMFDEI--PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
           +  A+ +FD      ++ V  NA+++GY ++      + + R M   GL+    TL+++L
Sbjct: 468 VEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVL 527

Query: 195 RACAGLSAAEF-GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
            AC  +    + G+Q+H + +R+C  L  +VF+ ++LI+MY KCG +T A  VF      
Sbjct: 528 PACDPVGGGVYSGKQIHCFAVRRC--LDTNVFVGTALIDMYSKCGEITTAENVFG----- 580

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
             G   K  V +T+M+   G++G+ K+ + L+ +M   G KPD V F++ ISAC+++G V
Sbjct: 581 --GMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLV 638

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             G+  +  M   + +   P+H+ C+ DLL +AG +++A++ I  + + G+    V++WG
Sbjct: 639 DEGLALYRSM-DSFGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGN---FVAIWG 694

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPH--NVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           +LL++C   GK EL KL  +K L+++    + G  V+LS + A    W+    LR+ M+ 
Sbjct: 695 SLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRA 754

Query: 432 KGLKKDVGCSWIEV 445
           +GLKK+ G SWI+V
Sbjct: 755 RGLKKEAGSSWIKV 768



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 172/370 (46%), Gaps = 25/370 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
           +N   +N +I+ + +NG    A+  FS  +    + LD     S+LTA++  +D   G+Q
Sbjct: 278 KNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQ 337

Query: 108 VQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           +  ++ K    +  V +G+AL+ +Y++   +  A  +FD +P K+ V  N +++ + +  
Sbjct: 338 LHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQND 397

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
               GL LV  M   G   D  TL+A+L A +     + G+Q H Y+IR          +
Sbjct: 398 FDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEG---L 454

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           +S LI+MY K G V  A +VF+   +       +D V W +M+  Y ++G  ++ I ++ 
Sbjct: 455 ESYLIDMYAKSGRVEMAQRVFDSFKN-----AKRDEVTWNAMIAGYTQSGQPEKAILVFR 509

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK----LEPGPEHYSCLVDL 342
           AML  G +P  V   +V+ AC   G    G  Y    +H +     L+      + L+D+
Sbjct: 510 AMLEAGLEPTSVTLASVLPACDPVG----GGVYSGKQIHCFAVRRCLDTNVFVGTALIDM 565

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDP 400
             + GE+  A  +   M     G S+V+ +  ++S    H  GK  L    + +   L P
Sbjct: 566 YSKCGEITTAENVFGGMT----GKSTVT-YTTMISGLGQHGFGKKALALFNSMQEKGLKP 620

Query: 401 HNVGIYVMLS 410
             V     +S
Sbjct: 621 DAVTFLSAIS 630



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 195/415 (46%), Gaps = 21/415 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPY-TTCRHKK-NLGTLTNCLKFLNPRNPLPFNVVIS 59
           VHAH       L    + ++ L+  Y ++ R+++  +  +      +  RN + +N +  
Sbjct: 127 VHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFG 186

Query: 60  DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG--W 117
            + + G P  AL+ F  M   G F  T     ++  +    D  +  Q+   + K G  +
Sbjct: 187 WYVKTGRPQEALELFVRMLEDG-FRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEY 245

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV-R 176
           ++ +FV S+ ID++++   +  A  +FD    KN+   N +++GY +   ++  ++L  +
Sbjct: 246 INDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSK 305

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
           ++ +  +  D  T  + L A +       G+Q+H Y+I K  +    V + ++L+ MY +
Sbjct: 306 ILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLI-KGMHRTLPVILGNALVVMYSR 364

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG V  A  +F+    RL     KD+V W +M+  + +N +  E + L   M  +G   D
Sbjct: 365 CGNVQTAFDLFD----RLP---EKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAAD 417

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
            V    V+SA S+TG +++G +   +++       G E Y  L+D+  ++G ++ A ++ 
Sbjct: 418 SVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESY--LIDMYAKSGRVEMAQRVF 475

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVGIYVML 409
           +   +      +   W A+++     G+ E   L  +  LE  L+P +V +  +L
Sbjct: 476 DSFKNAKRDEVT---WNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVL 527



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 170/412 (41%), Gaps = 53/412 (12%)

Query: 48  PRNPLPF--NVVISDFCRNGSPLYALKTFSFMHVHG---IFLDTYALCSSLTASTSVKDA 102
           PR P     N ++  +     P  AL+ ++ ++      +  D Y   ++LTA    +  
Sbjct: 62  PRPPPTLLCNALLIAYAARALPEEALRLYALLNHAARPPVRSDHYTYSAALTACARSRRL 121

Query: 103 RFGKQVQAHVTKSG--WLSSVFVGSALIDLYAKLLLIHDAEL-----MFDEIPVKNSVCA 155
           R G+ V AH+ +       +  + ++L++LYA  +   +A +     +FD +P +N V  
Sbjct: 122 RLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSW 181

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           N L   Y +       LEL   M   G      +   +  A        +  Q++  +++
Sbjct: 182 NTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVA-DDPSWPFQLYGLLVK 240

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN 275
                 ND+F+ SS I+M+ + G V  A +VF+ A         K+  +W +M+  Y +N
Sbjct: 241 YGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAA-------KKNTEVWNTMITGYVQN 293

Query: 276 GYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           G F E I L+  +L +   P D V F++ ++A S +  V LG +   +++          
Sbjct: 294 GQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVI 353

Query: 335 HYSCLVDLLCRAGELDKAWKLIN-------------------------------EMLDRG 363
             + LV +  R G +  A+ L +                               EM   G
Sbjct: 354 LGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSG 413

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
             + SV++  A+LSA  + G  ++GK A    +       G+   L ++YAK
Sbjct: 414 FAADSVTL-TAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAK 464



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 122/283 (43%), Gaps = 36/283 (12%)

Query: 136 LIHDAELMFDEIP-VKNSVCANALLSGYCEAKLWAGGLELVRLMPALG---LDYDHFTLS 191
           L H   L+ + +P    ++  NALL  Y    L    L L  L+       +  DH+T S
Sbjct: 50  LDHARRLLLEALPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAARPPVRSDHYTYS 109

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           A L ACA       GR VHA+M+R+  +L +   +++SL+ +Y       +A    ++  
Sbjct: 110 AALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREAR--VDVVR 167

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
              +    ++VV W ++ G Y + G  +E ++L+  ML +G +P  V+FV +  A     
Sbjct: 168 RLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADD 227

Query: 312 Q----------VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
                      VK G+EY    ++D  +       S  +D+    G++  A ++     D
Sbjct: 228 PSWPFQLYGLLVKYGVEY----INDLFV------VSSAIDMFSEFGDVQSARRV----FD 273

Query: 362 RGHGSSSVSMWGALLSACHDCGKFE-----LGKLAAQKALELD 399
           R     +  +W  +++     G+F        K+   + + LD
Sbjct: 274 RA-AKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLD 315


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 219/431 (50%), Gaps = 44/431 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L   N + +  +IS     GS       F  M    + +D + L + L       +   G
Sbjct: 186 LREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIG 245

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAK------------LLLIHD-------------- 139
           +Q+     K+G  SSV VG+A + +YAK             +  HD              
Sbjct: 246 EQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHS 305

Query: 140 -----AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
                A   F+ +P +N +  NA+L  YC+   W  GL+L  LM    +  D  T   ++
Sbjct: 306 GNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMI 365

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            AC+ L+ ++ G Q+ +  ++    LG+DV + +S I +Y +CG + +A  +F+      
Sbjct: 366 GACSELAISKLGTQILSQAVK--VGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQE-- 421

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                K+++ W S++G Y +NG   +VI++++ MLM G KPD + ++ ++S CSH+G VK
Sbjct: 422 -----KNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVK 476

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
               +F  M  D+ +    EH+ C+VDL  RAG L    KL  +M+D+     + S+WGA
Sbjct: 477 EAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLL----KLALDMIDQMPFKPNASIWGA 532

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           LLSAC      E+ +LA +  LEL+  N   Y++L+N Y+ F   + + ++R++MKEK +
Sbjct: 533 LLSACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMKEKRV 592

Query: 435 KKDVGCSWIEV 445
           +KD GCSWIEV
Sbjct: 593 QKDPGCSWIEV 603



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 163/351 (46%), Gaps = 27/351 (7%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           +G   +  + +  R+ + +N +IS F  +G  + +L TF  M + G   ++    S L+A
Sbjct: 75  MGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSA 134

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
             ++ D ++GK + A + +      V VG+ L+D+YAK  LI  ++ +F+ +   N V  
Sbjct: 135 CANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREHNVVTW 194

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
            +L+SG           ++   M    +  D+F L+ +L  C G +    G Q+H + ++
Sbjct: 195 TSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQLHGFTVK 254

Query: 216 KCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF-NLAGHRL------------EGEI---- 258
              N  + V + ++ + MY KCG   KA   F  +A H +             G +    
Sbjct: 255 TGMN--SSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERAR 312

Query: 259 -------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
                   ++V+ W +MLG Y +N +++E +KLY  ML    +PD + FVT+I ACS   
Sbjct: 313 DYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELA 372

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
             KLG +     V    L       +  + L  R G +++A  L + + ++
Sbjct: 373 ISKLGTQILSQAV-KVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQEK 422



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 158/370 (42%), Gaps = 45/370 (12%)

Query: 79  VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
           +    +D Y  C ++ A+         +QV   + K     S+F  + +I  Y+KL  + 
Sbjct: 30  IQNSIIDMYIKCDAIYAA---------EQVFLRIEKP----SLFSWNCMIYGYSKLHEMG 76

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
            A   F ++P ++SV  N ++S +    L    L     M   G   +  T +++L ACA
Sbjct: 77  RAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACA 136

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLEGE 257
            +   ++G+ +HA ++R    L  DV + + L++MY KCGL+  + +VFN L  H     
Sbjct: 137 NIYDFQWGKHLHARIVRVEPFL--DVLVGNGLVDMYAKCGLIDASKRVFNTLREH----- 189

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              +VV WTS++      G  +EV  ++  M  +    D     T++  C     + +G 
Sbjct: 190 ---NVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGE 246

Query: 318 EYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           +     +H + ++ G        +  + +  + G+ +KA      M      +  V  W 
Sbjct: 247 Q-----LHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETM-----AAHDVISWT 296

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
            ++++    G  E  +    +  E    NV  +  +   Y +   W+E  +L  LM    
Sbjct: 297 TMITSFSHSGNVERARDYFNRMPE---RNVISWNAMLGAYCQNSFWEEGLKLYILM---- 349

Query: 434 LKKDVGCSWI 443
           L+++V   WI
Sbjct: 350 LRQEVRPDWI 359



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY 87
           T+  H  N+    +    +  RN + +N ++  +C+N      LK +  M    +  D  
Sbjct: 300 TSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWI 359

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
              + + A + +  ++ G Q+ +   K G  S V V ++ I LY++   I +A+ +FD I
Sbjct: 360 TFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSI 419

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
             KN +  N+++ GY +       +E+ + M   G   DH T  A+L  C+     +  +
Sbjct: 420 QEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAK 479

Query: 208 QVHAYMIRKCCNLGNDVFMQS--SLIEMYGKCGLVTKALQVFN 248
                M +   + G  V ++    +++++G+ GL+  AL + +
Sbjct: 480 YHFNSMTK---DFGISVTLEHFVCMVDLFGRAGLLKLALDMID 519


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 130/392 (33%), Positives = 205/392 (52%), Gaps = 13/392 (3%)

Query: 54   FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
            +N ++  +  +G    AL+ +  M   G   +   L ++  A+  +   + GKQ+QA V 
Sbjct: 1077 WNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVV 1136

Query: 114  KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            K G+   +FV S ++D+Y K   +  A  +F+EIP  + V    ++SG  E       L 
Sbjct: 1137 KRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALF 1196

Query: 174  LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
                M    +  D +T + L++AC+ L+A E GRQ+HA  ++  C    D F+ +SL++M
Sbjct: 1197 TYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAF--DPFVMTSLVDM 1254

Query: 234  YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
            Y KCG +  A  +F              +  W +M+    ++G  +E ++ +E M   G 
Sbjct: 1255 YAKCGNIEDARGLFKRTN-------TSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGV 1307

Query: 294  KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
             PD V F+ V+SACSH+G V    E F  M   Y +EP  EHYSCLVD L RAG + +A 
Sbjct: 1308 TPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAE 1367

Query: 354  KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
            K+I+ M       +S SM+  LL+AC      E GK  A+K L L+P +   YV+LSN+Y
Sbjct: 1368 KVISSM----PFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVY 1423

Query: 414  AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            A    W+ +   R +M++  +KKD G SW+++
Sbjct: 1424 AAANQWENVASARNMMRKANVKKDPGFSWVDL 1455



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 150/337 (44%), Gaps = 18/337 (5%)

Query: 52   LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
            + +N  +S F + G    A+  F  M    +  D       L+    +     GKQ+   
Sbjct: 872  IAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGI 931

Query: 112  VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
            V +SG    V VG+ LI++Y K   +  A  +F ++   + V  N ++SG   + L    
Sbjct: 932  VVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECS 991

Query: 172  LELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            + +   +   GL  D FT++++LRAC+ L        Q+HA  ++    L  D F+ ++L
Sbjct: 992  VGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVL--DSFVSTTL 1049

Query: 231  IEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
            I++Y K G + +A  +F N  G         D+  W +M+  Y  +G F + ++LY  M 
Sbjct: 1050 IDVYSKSGKMEEAEFLFVNQDGF--------DLASWNAMMHGYIVSGDFPKALRLYILMQ 1101

Query: 290  MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
             +G + +++       A      +K G +  + +V            S ++D+  + GE+
Sbjct: 1102 ESGERANQITLANAAKAAGGLVGLKQG-KQIQAVVVKRGFNLDLFVISGVLDMYLKCGEM 1160

Query: 350  DKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            + A ++ NE+      S     W  ++S C + G+ E
Sbjct: 1161 ESARRIFNEI-----PSPDDVAWTTMISGCVENGQEE 1192



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 25/243 (10%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-- 148
           S L  + +  D   GK+  A +  SG     F+ + LI +Y+K   +  A  +FD  P  
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC---AGLSAAEF 205
            ++ V  NA+LS + +      G  L RL+    +     TL+ + + C   A  SAAE 
Sbjct: 691 SRDLVTWNAILSAHADKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAE- 747

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
              +H Y ++    L  DVF+  +L+ +Y K G + +A  +F+  G R       DVVLW
Sbjct: 748 --SLHGYAVK--IGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLR-------DVVLW 796

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
             M+  Y   G   E + L+      G +PD+V        C+    VK      EW + 
Sbjct: 797 NVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTL------CTLARVVKSKQNVLEWQLK 850

Query: 326 DYK 328
             K
Sbjct: 851 QLK 853



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 145/372 (38%), Gaps = 67/372 (18%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLN-----PRNPLPFNVVIS---DFCRNGSPLYALK 72
           + L+  Y+ C      G+L++  K  +      R+ + +N ++S   D  R+G  L+ L 
Sbjct: 665 NNLITMYSKC------GSLSSARKLFDTTPDTSRDLVTWNAILSAHADKARDGFHLFRLL 718

Query: 73  TFSFMH-VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY 131
             SF+          + +C  L+AS S  ++  G     +  K G    VFV  AL+++Y
Sbjct: 719 RRSFVSATRHTLAPVFKMCL-LSASPSAAESLHG-----YAVKIGLQWDVFVAGALVNIY 772

Query: 132 AKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191
           AK   I +A ++FD + +++ V  N ++  Y +  L    L L       GL  D  TL 
Sbjct: 773 AKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLC 832

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
            L R           + V  + +++    G  +FM                         
Sbjct: 833 TLARVVKS------KQNVLEWQLKQLKAYGTKLFMYDDDD-------------------- 866

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
                    DV+ W   L  + + G   E +  +  M+ +    D + FV ++S  +   
Sbjct: 867 ------DGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLN 920

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
            ++LG +     +H   +  G +      +CL+++  + G + +A  +  +M        
Sbjct: 921 CLELGKQ-----IHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQM-----NEV 970

Query: 368 SVSMWGALLSAC 379
            +  W  ++S C
Sbjct: 971 DLVSWNTMISGC 982


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/342 (37%), Positives = 193/342 (56%), Gaps = 15/342 (4%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSVCANALLSGY 162
           GKQ+ AHV K G+ +  F  + LI +Y     +  A  +FD +P +  NSV  NA+++ Y
Sbjct: 113 GKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAY 172

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            ++        L   M    +  D F  +++L AC GL A E G+ +H Y+ +    L  
Sbjct: 173 VQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIEL-- 230

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D  + +++I+MY KCG + KA +VFN           K +  W  M+G    +G  +  I
Sbjct: 231 DSKLATTVIDMYCKCGCLEKASEVFNELPQ-------KGISSWNCMIGGLAMHGKGEAAI 283

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
           +L++ M      PD + FV V+SAC+H+G V+ G  YF++M     L+PG EH+ C+VDL
Sbjct: 284 ELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDL 343

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG L++A KLINEM      +    + GAL+ AC   G  ELG+   +K +EL+PHN
Sbjct: 344 LGRAGLLEEARKLINEM----PVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHN 399

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            G YV+L+NLYA    W+++ ++R+LM ++G+KK  G S IE
Sbjct: 400 SGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIE 441



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 21/231 (9%)

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           SGY   +L    + +   M    +  + FT   L+RAC    A E G+Q+HA++++    
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLK--FG 124

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
            G D F  ++LI MY     + +A +VF+    R     +++ V W +M+  Y ++    
Sbjct: 125 FGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQR-----DRNSVSWNAMIAAYVQSNRLH 179

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E   L++ M +     D+    +++SAC+  G ++ G    +W +H Y  + G E  S L
Sbjct: 180 EAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG----KW-IHGYIEKSGIELDSKL 234

Query: 340 ----VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
               +D+ C+ G L+KA ++ NE+  +G     +S W  ++      GK E
Sbjct: 235 ATTVIDMYCKCGCLEKASEVFNELPQKG-----ISSWNCMIGGLAMHGKGE 280



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 122/316 (38%), Gaps = 46/316 (14%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N +I+ + ++     A   F  M +  + LD +   S L+A T +     GK +
Sbjct: 160 RNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWI 219

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             ++ KSG      + + +ID+Y K   +  A  +F+E+P K     N ++ G       
Sbjct: 220 HGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKG 279

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +EL + M    +  D  T   +L ACA     E G+    YM         +V    
Sbjct: 280 EAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYM--------TEVLGLK 331

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
             +E +G                                M+ + GR G  +E  KL   M
Sbjct: 332 PGMEHFG-------------------------------CMVDLLGRAGLLEEARKLINEM 360

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAG 347
            +N   PD      ++ AC   G  +LG +  + ++   +LEP     Y  L +L   AG
Sbjct: 361 PVN---PDAGVLGALVGACRIHGNTELGEQIGKKVI---ELEPHNSGRYVLLANLYASAG 414

Query: 348 ELDKAWKLINEMLDRG 363
             +   K+   M DRG
Sbjct: 415 RWEDVAKVRKLMNDRG 430


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 210/398 (52%), Gaps = 12/398 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA-STSVKDARFGKQ 107
           R+ + +N +IS + ++G    A+  F  M    +  +   + S L+A + S    + G  
Sbjct: 223 RDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNW 282

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V++ +   G  S++ + + LID+Y K   + +A  +F++I  KN V  N ++ GY     
Sbjct: 283 VRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSC 342

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +   L L R M    +D +  T  ++L ACA L A + G+ VHAY+ +   ++ N V + 
Sbjct: 343 YKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALW 402

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +SLI+MY KCG +  A ++F+           K +  W +M+  +  +G+    + L+  
Sbjct: 403 TSLIDMYAKCGDLAVAKRIFDCMN-------TKSLATWNAMISGFAMHGHTDTALGLFSR 455

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M   G  PD++ FV V++AC H G + LG  YF  M+ DYK+ P   HY C++DL  RAG
Sbjct: 456 MTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAG 515

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
             D+A  L+  M  +  G    ++W +LL AC    + EL +  A+   EL+P N   YV
Sbjct: 516 LFDEAETLVKNMEMKPDG----AIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYV 571

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YA    W+++ ++R  + +  +KK  GCS IEV
Sbjct: 572 LLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEV 609



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 180/373 (48%), Gaps = 59/373 (15%)

Query: 45  FLNPRNP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           F   RNP  + +N +I     + SP  AL+ +  M   G   + Y   S   + T ++ A
Sbjct: 85  FKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGA 144

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLY--------AKLL------------------- 135
             GKQV AHV K G   + FV ++LI++Y        A+L+                   
Sbjct: 145 HEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGY 204

Query: 136 ----LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191
                + +A  +FDEIPV++ V  NA++SGY ++      +     M    +  +  T+ 
Sbjct: 205 ASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTML 264

Query: 192 ALLRACAGL-SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLA 250
           ++L ACA   S+ + G  V +++  +   LG+++ + + LI+MY KCG + +A  +F   
Sbjct: 265 SVLSACAQSGSSLQLGNWVRSWIEDR--GLGSNIRLVNGLIDMYVKCGDLEEASNLF--- 319

Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHT 310
               E   +K+VV W  M+G Y     +KE + L+  M+ +   P++V F++++ AC++ 
Sbjct: 320 ----EKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANL 375

Query: 311 GQVKLGIEYFEWMVHDY------KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           G + LG    +W VH Y       ++     ++ L+D+  + G+L  A ++ + M     
Sbjct: 376 GALDLG----KW-VHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCM----- 425

Query: 365 GSSSVSMWGALLS 377
            + S++ W A++S
Sbjct: 426 NTKSLATWNAMIS 438



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 171/377 (45%), Gaps = 44/377 (11%)

Query: 65  GSPLYALKTFSFMHVHGIFLDTYALC---SSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            SP+  L+  SF          Y L     SLT  ++ K  +  KQ+ + + K+G  ++ 
Sbjct: 5   ASPVSTLQVLSFSDPS----PPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTH 60

Query: 122 FVGSALIDLYAKLLLIHD----AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           F  S LI+  A  +  H     A  +F  I   N V  N ++ G   ++     LE    
Sbjct: 61  FALSKLIEFCA--VSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVH 118

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M + G + + +T  ++ ++C  +  A  G+QVHA++++    L ++ F+ +SLI MY + 
Sbjct: 119 MISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLK--LGLEHNAFVHTSLINMYAQN 176

Query: 238 GLVTKALQVFN-------------LAGHRLEGEIN-----------KDVVLWTSMLGVYG 273
           G +  A  VF+             + G+  +G ++           +DVV W +M+  Y 
Sbjct: 177 GELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYA 236

Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG-QVKLGIEYFEWMVHDYKLEPG 332
           ++G  +E +  +E M      P+    ++V+SAC+ +G  ++LG     W + D  L   
Sbjct: 237 QSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSW-IEDRGLGSN 295

Query: 333 PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAA 392
               + L+D+  + G+L++A  L  ++ D+   S +V + G    +C+   K  LG    
Sbjct: 296 IRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCY---KEALGLFRR 352

Query: 393 QKALELDPHNVGIYVML 409
                +DP++V    +L
Sbjct: 353 MMQSNIDPNDVTFLSIL 369


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 215/430 (50%), Gaps = 44/430 (10%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           NP N   +  +I  F  +G+ L A++ +S M    I  D Y + S L A  S    R G+
Sbjct: 109 NP-NVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGR 167

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP------------------ 148
           +V +   K G+ S+  V   +++LY K   + DA  +F+E+P                  
Sbjct: 168 EVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGL 227

Query: 149 ------------VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
                        K++VC  A++ G+   +     LE  R M    +  + FT+  +L A
Sbjct: 228 VEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSA 287

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+ L A E GR VH+YM +    L  ++F+ ++LI MY +CG + +A  VF+    R   
Sbjct: 288 CSQLGALEIGRWVHSYMRKFEIEL--NLFVGNALINMYSRCGSIDEAQTVFDEMKDR--- 342

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
               DV+ + +M+     NG  ++ I+L+  M+    +P  V FV V++ACSH G V  G
Sbjct: 343 ----DVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFG 398

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            E F  M  DY++EP  EHY C+VDLL R G L++A+ LI  M      +    M G LL
Sbjct: 399 FEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM----KMTPDHIMLGTLL 454

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           SAC      ELG+  A++  +    + G YV+LS++YA    W E  Q+R  MKE G++K
Sbjct: 455 SACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQK 514

Query: 437 DVGCSWIEVT 446
           + GCS IEV 
Sbjct: 515 EPGCSSIEVN 524



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 127/278 (45%), Gaps = 26/278 (9%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           + A + ++G     F+   L+   +K   I  A  +F      N     AL+ G+  +  
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +   ++L   M    +  D++ ++++L+AC    A   GR+VH+  ++      ++  ++
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALK--LGFSSNRLVR 185

Query: 228 SSLIEMYGKCGLVTKALQVFN------------LAGHRLEGEI-----------NKDVVL 264
             ++E+YGKCG +  A +VF             ++ +  +G +            KD V 
Sbjct: 186 LRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVC 245

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           WT+M+  + RN      ++ +  M     +P+E   V V+SACS  G +++G     +M 
Sbjct: 246 WTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYM- 304

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
             +++E      + L+++  R G +D+A  + +EM DR
Sbjct: 305 RKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR 342


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 220/457 (48%), Gaps = 32/457 (7%)

Query: 10  GLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFL--NP-------------RNPLP- 53
            L+  C  + + + +  YT   H+ N   LT  + F   NP             + P P 
Sbjct: 40  SLIPKCTSLRELKQIQAYTIKTHQNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPD 99

Query: 54  ---FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110
              FN +   + R   PL A+   S +   G+  D Y   S L A   +K    GKQ+  
Sbjct: 100 IVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHC 159

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
              K G   +++V   LI++Y     +  A  +FD+I     V  NA+++          
Sbjct: 160 LAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNE 219

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            L L R +   GL     T+   L +CA L A + GR +H Y+ +        V + ++L
Sbjct: 220 ALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKN--GFDQYVKVNTAL 277

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           I+MY KCG +  A+ VF     R       D   W++M+  Y  +G+  + I +   M  
Sbjct: 278 IDMYAKCGSLDDAVSVFKDMPRR-------DTQAWSAMIVAYATHGHGSQAISMLREMKK 330

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
              +PDE+ F+ ++ ACSHTG V+ G EYF  M H+Y + P  +HY C++DLL RAG L+
Sbjct: 331 AKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLE 390

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +A K I+E+  +     +  +W  LLS+C   G  E+ KL  Q+  ELD  + G YV+LS
Sbjct: 391 EACKFIDELPIK----PTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILS 446

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           NL A+   WD++  LR++M +KG  K  GCS IEV  
Sbjct: 447 NLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNN 483


>gi|449434032|ref|XP_004134800.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g16470-like [Cucumis sativus]
 gi|449526397|ref|XP_004170200.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g16470-like [Cucumis sativus]
          Length = 486

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 230/439 (52%), Gaps = 17/439 (3%)

Query: 7   FETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS 66
           F   + LI   I  ++L   +   RHK    + +  +K  + ++   ++  +   C  G 
Sbjct: 13  FSAVIHLISTSIVPTQLPTVHLPRRHKSEFASPSFQVK-PHHKDTSSWDKTLRGLCLTGK 71

Query: 67  PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSA 126
              A+     M    +   +   C  L      K+   GK++ A +   G++ + ++ + 
Sbjct: 72  LAEAVALLCCM---ALQFHSKTYCLLLQECIFRKEYMKGKRIHAQMVVVGYVPNEYLNTK 128

Query: 127 LIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYD 186
           L+ LYAK   +  A ++ + +  K+ V  N+L++GY +  L   GLE    M   GL  D
Sbjct: 129 LLILYAKSGDLETAYVLHEHLLEKSLVSWNSLIAGYVQKGLAEVGLEFYLKMRQSGLMPD 188

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
            +T +++LRACA L++ E G++ H  +I+  C +G++V + S+L++MY KC  ++   + 
Sbjct: 189 QYTFASVLRACASLASLEHGKRAHGVLIK--CQIGDNVVVSSALVDMYFKCSSLSDGHKA 246

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
           FN +        N++V+ WT+++  YG++G   EV++ + +M+  G +P+ V F+ V++A
Sbjct: 247 FNKSS-------NRNVITWTALISGYGQHGRISEVLESFHSMINKGYRPNYVTFLAVLAA 299

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
           CS  G V     YF  M   Y +EP  +HY+ + DLL RAG L +A+  +   LD     
Sbjct: 300 CSRGGFVSEAWNYFSLMTKTYGIEPRGQHYAAMADLLARAGRLQEAYDFV---LDAPCKE 356

Query: 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLR 426
            SV MWGAL+ AC      +L K  A    ELDP N G  V+ SN +A   +WD + ++R
Sbjct: 357 HSV-MWGALVGACKVHEDVDLMKHVAASYFELDPKNSGKLVVFSNAFATSGLWDNVEEIR 415

Query: 427 ELMKEKGLKKDVGCSWIEV 445
            +MK+ G+ KD GCS IE+
Sbjct: 416 AMMKKSGMSKDPGCSRIEI 434


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/457 (30%), Positives = 239/457 (52%), Gaps = 28/457 (6%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           ++H     TG   +   +  + +M  Y  C    N          +  RN   +NV+I+ 
Sbjct: 145 SIHGKSIRTGF--VSDTVVANSIMSMYCKC---GNFDESRKVFDEMTIRNSGSWNVLIAG 199

Query: 61  FCRNGSPLYALKTFSF---MHVHGIFLDTYALCSSLT-ASTSVKDARFGKQVQAHVTKS- 115
           +  +G+  +  +T+ F   M +  +  D Y + S L      +    +G+++  ++ K+ 
Sbjct: 200 YAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNE 259

Query: 116 ---GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
              G  S V +G  LID+Y++   +     +FD +  +N     A+++GY E       L
Sbjct: 260 LVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEAL 319

Query: 173 ELVRLMPAL-GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
            L R M  + G++ +  +L ++L AC+  S    GRQ+H + +RK   L N+V + ++LI
Sbjct: 320 SLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRK--ELNNEVSLCNALI 377

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KCG +  A +VF       +  + KD + W+SM+  YG +G  +E I LY+ ML  
Sbjct: 378 DMYSKCGSLDSARRVFE------DDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQA 431

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
           G +PD +  V ++SAC  +G V  G+  +  +++DY +EP  E  +C+VD+L RAG+LD+
Sbjct: 432 GIRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDR 491

Query: 352 AWKLINEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           A   I  + ++ G      S+WGAL+S     G  E+ +LA +  ++L+P N   YV +S
Sbjct: 492 ALDFIKAIPVEPGP-----SVWGALVSCSIIHGDLEMQELAYRFLIQLEPKNPSNYVSIS 546

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           NLYA    WD + ++R +MK+K L+K  GCSWI +  
Sbjct: 547 NLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISINN 583



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 169/346 (48%), Gaps = 20/346 (5%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           ++L+  Y  C+H  +   + + L+    +N   +N +I+   +N     A + F+ M   
Sbjct: 62  TKLIFAYAICQHPYHSRLVFDSLQH---KNVFLWNSLINGCVKNRLYNEAFQLFNQMCSS 118

Query: 81  GIFLDTYALCSSLTASTSVKDARF-GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
            +  D + L S+L+  +S   A F GK +     ++G++S   V ++++ +Y K     +
Sbjct: 119 DVLPDDFTL-STLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDE 177

Query: 140 AELMFDEIPVKNSVCANALLSGYC---EAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  +FDE+ ++NS   N L++GY             E V+ M    +  D +T+S+LL  
Sbjct: 178 SRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPL 237

Query: 197 CAG-LSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           C G +   ++GR++H Y+++    LG  +DV +   LI+MY +   V    +VF+    R
Sbjct: 238 CDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCR 297

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM-LMNGTKPDEVAFVTVISACSHTGQ 312
                  +V  WT+M+  Y  NG   E + L+  M +++G +P+ V+ V+V+ ACS    
Sbjct: 298 -------NVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSG 350

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
           +  G +   + V   +L       + L+D+  + G LD A ++  +
Sbjct: 351 LLSGRQIHGFAVRK-ELNNEVSLCNALIDMYSKCGSLDSARRVFED 395



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 135/303 (44%), Gaps = 21/303 (6%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           F  + AL  SL  S + K  +  +Q  + +   G   + F+ + LI  YA     + + L
Sbjct: 20  FDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRL 79

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD +  KN    N+L++G  + +L+    +L   M +  +  D FTLS L +  + L A
Sbjct: 80  VFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGA 139

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G+ +H   IR      +D  + +S++ MY KCG   ++ +VF+    R  G      
Sbjct: 140 LFSGKSIHGKSIRT--GFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGS----- 192

Query: 263 VLWTSMLGVYGRNG---YFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-HTGQVKLGIE 318
             W  ++  Y  +G   + +E  +  + M M+  +PD     +++  C    G+   G E
Sbjct: 193 --WNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRE 250

Query: 319 YFEWMVHD---YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
              ++V +     L+       CL+D+  R+ ++    ++ + M  R     +V  W A+
Sbjct: 251 LHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCR-----NVFSWTAM 305

Query: 376 LSA 378
           ++ 
Sbjct: 306 ING 308


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/396 (32%), Positives = 218/396 (55%), Gaps = 12/396 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I+ + +   PL AL  F  M   G   D     S  +A   + D R    V
Sbjct: 196 RDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISV 255

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             +   +G++  V VG++++ +YAK   +  A L+FD +  +N +  N++LSGY +    
Sbjct: 256 HGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRP 315

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M A   D +  T   ++ AC+ L +   GR++H ++I    ++  D  +++
Sbjct: 316 TDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDI--DTTLRN 373

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           ++++MY KCG +  A+++FN       GE  +DV  W  ++  YG +G+ KE ++L+  M
Sbjct: 374 AIMDMYMKCGDLDTAVEMFNNCE---LGE--RDVSSWNVLISGYGVHGHGKEALELFSRM 428

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
            + G +P+++ F +++SACSH G +  G + F  M     + P  +HY+C+VD+L RAG 
Sbjct: 429 QVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYACMVDMLGRAGF 487

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A++LI ++  R     S  +WGALL AC   G  ELG++AA    +L+P + G YV+
Sbjct: 488 LNEAFRLIKKIPSR----PSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVL 543

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +SN+YA    W E+  +R+ MK +GLKK    S IE
Sbjct: 544 MSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIE 579



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 172/360 (47%), Gaps = 19/360 (5%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N ++  +   G    A+  + +M   G+ ++ +     L    S   A FG+ V   V +
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR 160

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           +G+ S +FV +AL+D+YAK   I DA  +FD + +++ VC  A+++ Y +A+     L L
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALML 220

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            R M   G   D  T  ++  A   L        VH Y +        DV + +S++ MY
Sbjct: 221 FRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLN--GFIGDVSVGNSIVGMY 278

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG V +A  VF+    R+E    ++ + W SML  Y +NG   + + L+  M  +   
Sbjct: 279 AKCGNVERARLVFD----RME---ERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECD 331

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           P+ V  + ++SACS+ G   LG +   +++   K++      + ++D+  + G+LD A +
Sbjct: 332 PNPVTALIMVSACSYLGSKHLGRKLHNFVISS-KMDIDTTLRNAIMDMYMKCGDLDTAVE 390

Query: 355 LIN--EMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           + N  E+     G   VS W  L+S    H  GK  L   +  +   ++P+++    +LS
Sbjct: 391 MFNNCEL-----GERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILS 445



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 33/298 (11%)

Query: 127 LIDLYAKLLLIHDAELMFDE--------IPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           LI LY+KL  +H A  +FD             NS   N +L  Y  A      ++L   M
Sbjct: 64  LIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYM 123

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
             +G+  ++FT   +L+ CA    A FG  VH  ++R     G+D+F++++L++MY KCG
Sbjct: 124 QRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR--TGFGSDLFVEAALVDMYAKCG 181

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
            +  A +VF+         + +DVV WT+M+ +Y +     + + L+  M   G   DE+
Sbjct: 182 EIGDAHEVFDRM-------LIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEI 234

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWK 354
             ++V SA    G  ++ I      VH Y +  G        + +V +  + G +++A  
Sbjct: 235 TAISVASAVGQLGDGRMAIS-----VHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARL 289

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYVMLS 410
           + + M +R   S     W ++LS     G+    L      +A E DP+ V   +M+S
Sbjct: 290 VFDRMEERNGIS-----WNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVS 342


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/420 (30%), Positives = 224/420 (53%), Gaps = 14/420 (3%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGS-PLYALKTFSFMHVHGIFLD 85
           Y  C    ++         +   N + +  +I+ + ++G     A++ F  M    +  +
Sbjct: 190 YAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPN 249

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
            +   S L A  ++ D   G+QV A V K    S   VG++LI +Y++   + +A   FD
Sbjct: 250 HFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFD 309

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
            +  KN V  N +++ Y ++       EL   +   G   + FT ++LL   + + A   
Sbjct: 310 VLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGK 369

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G Q+H+ +++      +++ + ++LI MY +CG +  A QVFN  G       + +V+ W
Sbjct: 370 GEQIHSRILKS--GFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-------DGNVISW 420

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           TSM+  + ++G+    ++ +  ML  G  P+EV ++ V+SACSH G +  G+++F+ M  
Sbjct: 421 TSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKV 480

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           ++ + P  EHY+C+VDLL R+G L++A +L+N M  +    +   +    L AC   G  
Sbjct: 481 EHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFK----ADALVLRTFLGACRVHGNM 536

Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LGK AA+  LE DPH+   Y++LSNL+A    W+E+ ++R+ MKE+ L K+ GCSWIEV
Sbjct: 537 DLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEV 596



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 174/360 (48%), Gaps = 38/360 (10%)

Query: 34  KNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALC 90
           K  G L +  K  +    RN + + ++I+ F + G    A+  F  M + G   D + L 
Sbjct: 90  KGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLS 149

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEI 147
             ++A   +     G+Q    V KSG    V VG +L+D+YAK +    + DA  +FD +
Sbjct: 150 GVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRM 209

Query: 148 PVKNSVCANALLSGYCEAKLWAGG-----LELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           PV N +   A+++GY +    +GG     +EL   M    +  +HFT S++L+ACA LS 
Sbjct: 210 PVHNVMSWTAIITGYVQ----SGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSD 265

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G QV+A +++    L +   + +SLI MY +CG +  A + F++          K++
Sbjct: 266 IWLGEQVYALVVKM--RLASINCVGNSLISMYSRCGNMENARKAFDVL-------FEKNL 316

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V + +++  Y ++   +E  +L+  +   GT  +   F +++S  S  G +  G +    
Sbjct: 317 VSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQ---- 372

Query: 323 MVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            +H   L+ G +      + L+ +  R G ++ A+++ NEM     G  +V  W ++++ 
Sbjct: 373 -IHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEM-----GDGNVISWTSMITG 426



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 189/423 (44%), Gaps = 56/423 (13%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           N R+ + ++ +IS +  N     A+  F  M   G + + Y       A ++ ++   GK
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 107 QVQAHVTKSGWL-SSVFVGSALIDLYAKLL-LIHDAELMFDEIPVKNSVCANALLSGYCE 164
            +   + K+G+  S V VG ALID++ K    +  A  +FD +P +N V    +++ + +
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  ++L   M   G   D FTLS ++ ACA +     GRQ H  +++   +L  DV
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDL--DV 180

Query: 225 FMQSSLIEMYGKC---GLVTKALQVFN-LAGHRLEGEINKDVVLWTSMLGVYGRNGYF-K 279
            +  SL++MY KC   G V  A +VF+ +  H        +V+ WT+++  Y ++G   +
Sbjct: 181 CVGCSLVDMYAKCVADGSVDDARKVFDRMPVH--------NVMSWTAIITGYVQSGGCDR 232

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-------------- 325
           E I+L+  M+    KP+   F +V+ AC++   + LG + +  +V               
Sbjct: 233 EAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLI 292

Query: 326 ----------------DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
                           D   E     Y+ +V+   ++   ++A++L NE+   G G ++ 
Sbjct: 293 SMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAF 352

Query: 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHN--------VGIYVMLSNLYAKFCMWDE 421
           + + +LLS     G    G+    + L+    +        + +Y    N+ A F +++E
Sbjct: 353 T-FASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNE 411

Query: 422 IGQ 424
           +G 
Sbjct: 412 MGD 414



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/413 (19%), Positives = 173/413 (41%), Gaps = 70/413 (16%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           + L+  Y+ C    N+         L  +N + +N +++ + ++ +   A + F+ +   
Sbjct: 289 NSLISMYSRC---GNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGA 345

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G  ++ +   S L+ ++S+     G+Q+ + + KSG+ S++ + +ALI +Y++   I  A
Sbjct: 346 GTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAA 405

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +F+E+   N +   ++++G+ +       LE    M   G+  +  T  A+L AC+ +
Sbjct: 406 FQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHV 465

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                                                GL+++ L+ F     ++E  I  
Sbjct: 466 -------------------------------------GLISEGLKHFK--SMKVEHGIVP 486

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
            +  +  ++ + GR+G+ +E ++L  +M     K D +   T + AC   G + LG    
Sbjct: 487 RMEHYACVVDLLGRSGHLEEAMELVNSMPF---KADALVLRTFLGACRVHGNMDLGKHAA 543

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           E ++     +P    Y  L +L   AG+ ++  ++  +M +R     +   W  + +  H
Sbjct: 544 EMILEQDPHDPAA--YILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVH 601

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
              KF +G  +  +A E+                    +DE+ QL   +KE G
Sbjct: 602 ---KFYVGDTSHPQAQEI--------------------YDELDQLALKIKELG 631


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/425 (31%), Positives = 221/425 (52%), Gaps = 18/425 (4%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           L+  Y+ C     LG        ++ ++ + +N +IS + R G    A+  F  M   G 
Sbjct: 167 LITMYSRC---GELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGF 223

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             D   L S L A   + D   G  ++  V ++    + FVGSALI +Y K   +  A  
Sbjct: 224 EPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARR 283

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD +  K+ V  NA+++GY +  +    + L   M   G++ D  TL  +L ACA + A
Sbjct: 284 VFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGA 343

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            +FG+ +  Y   +   L ND+++ ++LI+MY KCG +  AL+VF       E    K+ 
Sbjct: 344 LDFGKWLDTYASER--GLQNDIYVSTALIDMYAKCGSLDDALRVF-------EDMPQKNE 394

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYF 320
           V W +M+     +G  +E + L++ M   G   +P++++F+ V+SAC H G V  G + F
Sbjct: 395 VSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLF 454

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
           + M   + L P  EH+SC+VDLL RAG + +AW  I +M ++        + GALL AC 
Sbjct: 455 DLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEK----PDEVVLGALLGACQ 510

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
                ++ +      LE++P N G Y++ S ++A    WD+  ++R LM+++G+ K  GC
Sbjct: 511 KRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGC 570

Query: 441 SWIEV 445
           SWIE+
Sbjct: 571 SWIEI 575



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 179/390 (45%), Gaps = 31/390 (7%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSF-MHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           N   FN++I               F + M   GI  + +       A  ++     G+  
Sbjct: 89  NEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCA 148

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + V KSG  +   V  +LI +Y++   +  A  +FDEI  K+ V  N+++SGY      
Sbjct: 149 HSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYA 208

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + L   M   G + D  TL ++L AC  L     G  +  +++    +L +  F+ S
Sbjct: 209 GDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNS--FVGS 266

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI MYGKCG ++ A +VF+         + KDVV W +M+  Y +NG   E I L+  M
Sbjct: 267 ALIGMYGKCGDLSSARRVFDRM-------VKKDVVTWNAMITGYAQNGVSDEAIILFSGM 319

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLC 344
             +G  PD++  V V+SAC+  G +  G    +W+   Y  E G ++     + L+D+  
Sbjct: 320 RESGVNPDKITLVGVLSACASIGALDFG----KWL-DTYASERGLQNDIYVSTALIDMYA 374

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK----FELGKLAAQKALELDP 400
           + G LD A ++  +M  +   S     W A++SA    G+      L K  +++   + P
Sbjct: 375 KCGSLDDALRVFEDMPQKNEVS-----WNAMISALAFHGRPQESLSLFKRMSKEGGAVRP 429

Query: 401 HNVGIYVMLSN-LYAKFCMWDEIGQLRELM 429
           +++    +LS  ++A     DE  QL +LM
Sbjct: 430 NDISFIGVLSACVHAGLV--DEGRQLFDLM 457



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 167/383 (43%), Gaps = 57/383 (14%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           T  L S L   TS K     +Q+   +  +      F+    IDL       ++A L+F 
Sbjct: 31  TDKLLSLLKQCTSTKSL---QQIHTQMIINAIHKPNFLLHRFIDLKD----FNNASLLFS 83

Query: 146 EIPVKNSVCANALLSGYCEA-KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           +IP  N    N ++ G     + +   +E    M   G+  ++FT   +  ACA L    
Sbjct: 84  QIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLN 143

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVV 263
            G+  H+ +++    L  D  ++ SLI MY +CG +  A +VF+        EI+ KD+V
Sbjct: 144 HGQCAHSGVLKS--GLCADGHVRHSLITMYSRCGELGCARRVFD--------EISEKDLV 193

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W SM+  Y R GY  + + L+  M   G +PDE+  V+++ AC   G + LG  + E  
Sbjct: 194 SWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLG-SWIEGF 252

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR----------GHGSSSVSMWG 373
           V + +++      S L+ +  + G+L  A ++ + M+ +          G+  + VS   
Sbjct: 253 VVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEA 312

Query: 374 --------------------ALLSACHDCGKFELGK----LAAQKALELDPHNVGIYVML 409
                                +LSAC   G  + GK     A+++ L+ D   + +   L
Sbjct: 313 IILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQND---IYVSTAL 369

Query: 410 SNLYAKFCMWDEIGQLRELMKEK 432
            ++YAK    D+  ++ E M +K
Sbjct: 370 IDMYAKCGSLDDALRVFEDMPQK 392


>gi|297839315|ref|XP_002887539.1| hypothetical protein ARALYDRAFT_339633 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333380|gb|EFH63798.1| hypothetical protein ARALYDRAFT_339633 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 665

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/426 (31%), Positives = 231/426 (54%), Gaps = 25/426 (5%)

Query: 31  RHKKNLGTLTNCLKFL--NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTY 87
           RH  +LG +     FL     N L  N  +  +  +G P+ AL  F         F+D++
Sbjct: 6   RHLNSLGVINKFDSFLLHYHTNSLKSNHTLKHYLESGEPIKALLNFQHRFRESPSFVDSF 65

Query: 88  ALCSSLTASTSVKDARF-GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           ++  ++ AS++ K + F G+Q+ A V K G+ + + + ++L+  Y+    + DA  +FDE
Sbjct: 66  SVLFAIKASSAQKASSFDGRQIHALVRKLGFNAVIQIQTSLVGFYSSAGDLDDARQVFDE 125

Query: 147 IPVK-NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
            P K N V   A++S Y E +     ++L + M    ++ D   ++A L ACA L A + 
Sbjct: 126 TPEKQNIVLWTAMISAYSENENSVEAIKLFKRMEEEKIELDEVIVTAALSACADLGAVQM 185

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G Q+++  I++   L  D+ +++SL+ MY K G + KA ++F+         + KDV  +
Sbjct: 186 GEQIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGEIEKARKLFDET-------MRKDVTTY 238

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLM------NGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           T M+  Y  NG  +E ++L++ M M          P++V F+ V+ ACSH+G V+ G +Y
Sbjct: 239 TCMIFGYALNGEAQESLELFKKMKMIDQSQDTVITPNDVTFIGVLMACSHSGLVEEGKQY 298

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           F+ M+ DY L+P   H+ C+VDL CR+G L  A + I +M  + +      +W  LL AC
Sbjct: 299 FKSMIVDYNLKPRDAHFGCMVDLFCRSGHLKDAHEFIKQMPIKPNA----VIWRTLLGAC 354

Query: 380 HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439
              G  ELG+   ++  +L+  +VG YV LSN+YA   MWDE  ++R+ ++++ +    G
Sbjct: 355 ILHGNVELGEEVQKRIFKLERDHVGDYVALSNIYASKGMWDEKWKMRDRVRKRRVP---G 411

Query: 440 CSWIEV 445
            SWIE+
Sbjct: 412 KSWIEL 417


>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 581

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/402 (33%), Positives = 212/402 (52%), Gaps = 20/402 (4%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           + + +N +I+ +   G P  AL+ FS M    + LD   L ++L A       + GK   
Sbjct: 160 DTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCH 219

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           A +  +G+  + ++GS+LI +YAK   + DA  +FD +P +N+VC  +++SGY +     
Sbjct: 220 ALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSK 279

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN---LGNDVFM 226
             ++L R M   G+  D  T+S ++ +C  + A + GR VHAY     C+   LG D+ +
Sbjct: 280 EAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAY-----CDIHGLGKDISV 334

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           ++SLI+MY KCG + KA  +F        G + +D   WT ++  +  NG   E + L+ 
Sbjct: 335 KNSLIDMYSKCGDIKKAYDIFC-------GMVKRDNFSWTVIIMGFAANGLSGEALDLFA 387

Query: 287 AMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
            M    G  P+E+ F+ V+++CSH G V+ G  +F  M   Y + P  EHY C+VDLL R
Sbjct: 388 QMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGR 447

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           A  L +A + I EM      +    MW +LL AC  CG+  L +  A++   L+P+  G 
Sbjct: 448 AKLLAEAEQFIKEM----PIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGG 503

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            V+LS +YA    W +  ++R  +      K  GCS+IEV G
Sbjct: 504 DVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDG 545



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 8/177 (4%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           D+++LSA L   A + +   G Q+HA  ++    L +D F+ ++LI MY  C   + A  
Sbjct: 92  DNYSLSAALSTAARMPSVVVGAQLHALSVK--LGLSSDTFVLNTLINMYSSCSYPSTARS 149

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
           V + A          D V W +++  Y   G   + ++ +  M       D+V  +  + 
Sbjct: 150 VLDSAPKG-----ASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALV 204

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           AC+ T  +K+G      +V +   E      S L+ +  + G+++ A ++ + M DR
Sbjct: 205 ACARTCMMKVGKLCHALLVTN-GFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDR 260


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 226/446 (50%), Gaps = 24/446 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVV 57
            +H H    G   I  +   + L   YT C      G + + L+    ++ R+ + +  +
Sbjct: 219 EIHTHVIVKGFAAILWV--ANSLATMYTEC------GEMQDGLRLFESMSERDVVLWTSL 270

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+ + R G    A+ TF  M    +  +     S+  A  S+    +G+Q+  +V   G 
Sbjct: 271 ITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGL 330

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
             S+ V ++++ +Y+    +  A ++F  +  ++ +  + ++ GY +A       +    
Sbjct: 331 GDSLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSW 390

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G     F L++LL     ++  E GRQVHA  +     L  +  ++S+LI MY KC
Sbjct: 391 MRQAGPQPTDFALASLLSVSGIMAVLEQGRQVHALALY--LGLEQNPTIRSALINMYSKC 448

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G + +A +VF       E +   D+V  T+M+  Y  +G  +E I L+E  L    +PD+
Sbjct: 449 GSIIEASKVF-------EEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDD 501

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           V F++V++ACSH+GQ+ LG +YF  M  +Y + P  EHY C+VDLLCRAG L+ A K+IN
Sbjct: 502 VTFISVLTACSHSGQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMIN 561

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
           EM  +        +W  LL AC + G  E G+ AAQ+ LELDP +    V L+N+++   
Sbjct: 562 EMPWKKDD----VVWTTLLRACKEKGDVERGRRAAQRILELDPTSFTTLVTLANIHSSTG 617

Query: 418 MWDEIGQLRELMKEKGLKKDVGCSWI 443
            W E   +R+ MK KG+ K+ G S I
Sbjct: 618 NWKEAANVRKDMKSKGVIKEPGWSSI 643



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 137/273 (50%), Gaps = 13/273 (4%)

Query: 48  PRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVH--GIFLDTYALCSSLTASTSVKDARF 104
           PR  +  +  ++  +     P  AL  FS M V   G+  DTY L  +L A     +  +
Sbjct: 55  PRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSVALKACGQSSNIAY 114

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G+ + A+  K+  LSSVFVGSAL+D+Y ++  I  +  +F E+P +NSV   A ++G   
Sbjct: 115 GESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRNSVTWTAFITGLVH 174

Query: 165 AKLWAGGLELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
           A L   GL     M     L  D F  +  L+ACA L   ++GR++H ++I K       
Sbjct: 175 AGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREIHTHVIVK--GFAAI 232

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           +++ +SL  MY +CG +   L++F       E    +DVVLWTS++  Y R G  ++ + 
Sbjct: 233 LWVANSLATMYTECGEMQDGLRLF-------ESMSERDVVLWTSLITAYIRIGQEEKAVN 285

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            +  M  +   P+E  F +  +AC+   ++  G
Sbjct: 286 TFLLMRNSQVSPNEQTFASTFAACASLSRLVWG 318



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 129/301 (42%), Gaps = 32/301 (10%)

Query: 96  STSVKDA-RFGKQVQAHVTKSGWLSSVFVGSALIDLY--AKLLLIHDAELMFDEIPVKNS 152
           ST V++  R  +   A + KS   + V   S L DL    KL +   A  +FD++P ++ 
Sbjct: 3   STVVRNGGRIRRFCTASIEKSMHSNHVDTHSQLQDLIDSGKLRV---ARQVFDKMPRRDI 59

Query: 153 VCANALLSGYCEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
               A++ GY  A      L L   M    LG+  D + LS  L+AC   S   +G  +H
Sbjct: 60  KSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSVALKACGQSSNIAYGESLH 119

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
           AY  +    L + VF+ S+L++MY + G + K+ +VF     R       + V WT+ + 
Sbjct: 120 AYAEKTF--LLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFR-------NSVTWTAFIT 170

Query: 271 VYGRNGYFKEVIKLYEAM-LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
                G   E ++ +  M        D  AF   + AC+   QVK G E     +H + +
Sbjct: 171 GLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGRE-----IHTHVI 225

Query: 330 EPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
             G        + L  +    GE+    +L   M +R      V +W +L++A    G+ 
Sbjct: 226 VKGFAAILWVANSLATMYTECGEMQDGLRLFESMSER-----DVVLWTSLITAYIRIGQE 280

Query: 386 E 386
           E
Sbjct: 281 E 281



 Score = 38.1 bits (87), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 81/203 (39%), Gaps = 22/203 (10%)

Query: 214 IRKCCNLGNDVFMQSSLIEMYGK------CGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           IR+ C    +  M S+ ++ + +       G +  A QVF+    R       D+  WT+
Sbjct: 12  IRRFCTASIEKSMHSNHVDTHSQLQDLIDSGKLRVARQVFDKMPRR-------DIKSWTA 64

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMN--GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           ++  Y      +E + L+ AM ++  G   D       + AC  +  +  G     +   
Sbjct: 65  IMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSVALKACGQSSNIAYGESLHAYAEK 124

Query: 326 DYKLEP---GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
            + L     G    S L+D+  R G++DK+ ++  EM  R   + +  + G + +  H  
Sbjct: 125 TFLLSSVFVG----SALLDMYMRIGKIDKSCRVFAEMPFRNSVTWTAFITGLVHAGLHYE 180

Query: 383 GKFELGKLAAQKALELDPHNVGI 405
           G     +++  K L  D     I
Sbjct: 181 GLRYFSQMSRFKQLSSDTFAFAI 203


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/454 (32%), Positives = 230/454 (50%), Gaps = 47/454 (10%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           Y +C H  +L  L   +   N ++ + +N +++ F + G P  AL  F  M   G+  + 
Sbjct: 285 YASCGHL-DLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNA 343

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL---------------- 130
             + S ++A     +   G++V  ++ ++  + ++ V +A ID+                
Sbjct: 344 VTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDN 403

Query: 131 ---------------YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
                          YAK+     A  +FD +P K+    N L+SGY ++      L + 
Sbjct: 404 MEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIF 463

Query: 176 R--LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           R   +   G   D  TL + L ACA L A + G  +H Y+ ++   L  +  + +SLI+M
Sbjct: 464 RELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRN--LATSLIDM 521

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G V KA++VF+  G       NKDV +W++M+     +G  +  I+L+  M     
Sbjct: 522 YSKSGDVEKAIEVFHSIG-------NKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQV 574

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           KP+ V F  ++ ACSH+G V  G   F+ M   Y + P  +HYSC+VD+L RAG L++A 
Sbjct: 575 KPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEAL 634

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           K I  M      + S S+WGALL AC   G  EL + A  + LE++P N G YV+LSNLY
Sbjct: 635 KFIEGM----PLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLY 690

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           AK   W+ + +LR+ M++ GLKK+ GCS IE+ G
Sbjct: 691 AKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDG 724



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDL--YAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           KQ+ A + ++  L   +  S L     ++    +  A  +FD+IP  N    N L+    
Sbjct: 156 KQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALA 215

Query: 164 -EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
             +      L  +R++       + FT   L++A A       G+ VH   I+   + G+
Sbjct: 216 TSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIK--TSFGD 273

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DVF+ +SLI  Y  CG +  A  VF +    +EG  NKD+V W SM+  + + GY  + +
Sbjct: 274 DVFVLNSLIHFYASCGHLDLAYLVFEM----IEGN-NKDIVSWNSMVTGFVQGGYPDKAL 328

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L+E M   G  P+ V  V+V+SAC+ T  + LG +  +++  + ++       +  +D+
Sbjct: 329 DLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRN-EMMMNLNVCNATIDM 387

Query: 343 LCRAGELDKAWKLINEMLDR 362
             + GE++ A  L + M  R
Sbjct: 388 FVKCGEVEIARGLFDNMEKR 407



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 178/395 (45%), Gaps = 47/395 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           N   +N++I     +  P+ ++  F   +H      + +     + A    +    GK V
Sbjct: 203 NLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAV 262

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS--VCANALLSGYCEAK 166
                K+ +   VFV ++LI  YA    +  A L+F+ I   N   V  N++++G+ +  
Sbjct: 263 HGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGG 322

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                L+L   M   G+  +  T+ +++ ACA       GR+V  Y+ R      N++ M
Sbjct: 323 YPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDR------NEMMM 376

Query: 227 Q----SSLIEMYGKCGLVTKALQVFN-------------------LAGHRLEGEI----- 258
                ++ I+M+ KCG V  A  +F+                   ++ H +  +I     
Sbjct: 377 NLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMP 436

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM--NGTKPDEVAFVTVISACSHTGQVKLG 316
            KD+  W  ++  Y ++G  KE + ++  + +  +G +PD+V  ++ +SAC+  G + +G
Sbjct: 437 RKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIG 496

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            E+    +   +++      + L+D+  ++G+++KA ++ + +     G+  V +W A++
Sbjct: 497 -EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSI-----GNKDVFVWSAMI 550

Query: 377 S--ACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
           +  A H  G+  +      +  ++ P++V    +L
Sbjct: 551 AGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLL 585


>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/402 (33%), Positives = 213/402 (52%), Gaps = 21/402 (5%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           + + +N +I+ +   G P  AL+ FS M    + LD   L ++L A       + GK   
Sbjct: 160 DTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCH 219

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           A +  +G+  + ++GS+LI +YAK   + DA  +FD +P +N+VC  +++SGY +     
Sbjct: 220 ALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSK 279

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN---LGNDVFM 226
             ++L R M   G+  D  T+S ++ +C  + A + GR VHAY     C+   LG D+ +
Sbjct: 280 EAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAY-----CDIHGLGKDISV 334

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           ++SLI+MY KCG + KA  +F        G + +D   WT ++G +  NG   E + L+ 
Sbjct: 335 KNSLIDMYSKCGDIKKAYDIFC-------GMVKRDNFSWTVIMG-FAANGLSGEALDLFA 386

Query: 287 AMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
            M    G  P+E+ F+ V+++CSH G V+ G  +F  M   Y + P  EHY C+VDLL R
Sbjct: 387 QMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGR 446

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           A  L +A + I EM      +    MW +LL AC  CG+  L +  A++   L+P+  G 
Sbjct: 447 AKLLAEAEQFIKEM----PIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGG 502

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            V+LS +YA    W +  ++R  +      K  GCS+IEV G
Sbjct: 503 DVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDG 544



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 8/177 (4%)

Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           D+++LSA L   A + +   G Q+HA  ++    L +D F+ ++LI MY  C   + A  
Sbjct: 92  DNYSLSAALSTAARMPSVVVGAQLHALSVK--LGLSSDTFVLNTLINMYSSCSYPSTARS 149

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
           V + A          D V W +++  Y   G   + ++ +  M       D+V  +  + 
Sbjct: 150 VLDSAPKG-----ASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALV 204

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           AC+ T  +K+G      +V +   E      S L+ +  + G+++ A ++ + M DR
Sbjct: 205 ACARTCMMKVGKLCHALLVTN-GFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDR 260


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/433 (30%), Positives = 231/433 (53%), Gaps = 24/433 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCL---KFLNPRNPLPFNVVISDFCRNGSPLYALKT 73
           +  ++ L+  YT C      G L++ L   + +  R    +N +I  F +N     AL+ 
Sbjct: 257 VDIRNALISMYTKC------GCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRI 310

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M +HG+  D   L S L+A   + + R G  V +++  +G      + ++LI++YAK
Sbjct: 311 FEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAK 370

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  AE +F  +  K+ V    ++ GY +   +     L   M    +      L +L
Sbjct: 371 CGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSL 430

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L AC+ L A + GR++H+Y+  +  N+  D+ ++S+L++MY KCG +  A ++F    H 
Sbjct: 431 LSACSQLGALDKGREIHSYI--EEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQH- 487

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQ 312
                 K  + W +M+G    NGY KE ++L++ ML +   KPD +    V+ AC+H G 
Sbjct: 488 ------KQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGM 541

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           V  G+ YF +++    + P  EHY C+VDLL RAG LD+A+  I +M        +  +W
Sbjct: 542 VDEGLRYF-YLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIE----PNPVIW 596

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
           G+LL+AC    + +LGK+  Q  + + P++VG++V++SNL+A+   WD++  +R LM  +
Sbjct: 597 GSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSR 656

Query: 433 GLKKDVGCSWIEV 445
           G++K  G S ++V
Sbjct: 657 GIEKTPGHSSVQV 669



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 158/320 (49%), Gaps = 21/320 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF---GK 106
           N   +N +I  +    +P  AL  F  M   G+  D Y + + ++AS +    ++   G 
Sbjct: 82  NAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGD 141

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            + A V + G+ S VFV S L++ Y     + +A  +F+E+  ++ V   +++S   +  
Sbjct: 142 AIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCG 201

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
            W   L+++  M A G+  +  T+ +LL AC    A + GR V+  + +    +  DV +
Sbjct: 202 HWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGK--FGIEADVDI 259

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           +++LI MY KCG ++ AL+ F     R           W +++  + +N   KE ++++E
Sbjct: 260 RNALISMYTKCGCLSDALEAFQAMPARYTKS-------WNTLIDGFVQNHEHKEALRIFE 312

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDL 342
            ML++G  PD +  V+V+SAC+  G+++ G+      VH Y  + G        + L+++
Sbjct: 313 EMLLHGVTPDGITLVSVLSACAQLGELRKGMH-----VHSYIKDNGICCDNILTNSLINM 367

Query: 343 LCRAGELDKAWKLINEMLDR 362
             + G++  A ++   M  +
Sbjct: 368 YAKCGDMAAAERVFQTMTKK 387



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 168/383 (43%), Gaps = 36/383 (9%)

Query: 34  KNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           +++   +   + +  R+ + +  +IS   + G     LK  S M   GI  +   + S L
Sbjct: 170 RSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLL 229

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           +A    +    G+ V   V K G  + V + +ALI +Y K   + DA   F  +P + + 
Sbjct: 230 SACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTK 289

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
             N L+ G+ +       L +   M   G+  D  TL ++L ACA L     G  VH+Y+
Sbjct: 290 SWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYI 349

Query: 214 IRK--CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
                CC    D  + +SLI MY KCG +  A +VF       +    KDVV WT M+  
Sbjct: 350 KDNGICC----DNILTNSLINMYAKCGDMAAAERVF-------QTMTKKDVVSWTVMVCG 398

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE---YFEWM--VHD 326
           Y +   F     L+E M +      E+A V+++SACS  G +  G E   Y E M    D
Sbjct: 399 YVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKD 458

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
             LE      S LVD+  + G +D A ++  +M  +   S     W A++      G   
Sbjct: 459 LCLE------SALVDMYAKCGCIDTASEIFRKMQHKQTLS-----WNAMIGGLASNG--- 504

Query: 387 LGKLAAQ---KALEL-DPHNVGI 405
            GK A +   + LEL DP   GI
Sbjct: 505 YGKEAVELFDQMLELQDPKPDGI 527



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 121/264 (45%), Gaps = 21/264 (7%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD---AELMFDEIPVKNSVCANALLSG 161
           G+ V+AH+T     S  FV   LI L A     HD   A  +FD +   N+   N ++ G
Sbjct: 38  GRLVRAHLT-----SDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRG 92

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLS---ALLRACAGLSAAEFGRQVHAYMIRKCC 218
           Y   +     L + R M   G+  D++T++   +   A AGL     G  +HA + R   
Sbjct: 93  YSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRR--I 150

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
              +DVF+ S L+  YG    V +A +VF       E    +DVV WTSM+    + G++
Sbjct: 151 GFTSDVFVMSGLVNYYGAFRSVKEASKVF-------EEMYERDVVSWTSMISACAQCGHW 203

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
            +V+K+   M   G  P++V  ++++SAC  T  V  G   +   V  + +E   +  + 
Sbjct: 204 DKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYN-QVGKFGIEADVDIRNA 262

Query: 339 LVDLLCRAGELDKAWKLINEMLDR 362
           L+ +  + G L  A +    M  R
Sbjct: 263 LISMYTKCGCLSDALEAFQAMPAR 286


>gi|18873857|gb|AAL79803.1|AC079874_26 putative pentatricopeptide repeat domain containing protein [Oryza
           sativa Japonica Group]
          Length = 391

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 183/338 (54%), Gaps = 13/338 (3%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V   V KSG  S  FV S ++D+Y K  +I +A+ + D I  +  V  NA+LSG+   K 
Sbjct: 2   VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKE 61

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
                +    M  +GL  DHFT + +L  CA L+  E G+Q+H  +I++   + +D ++ 
Sbjct: 62  SEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQ--EMLDDEYIS 119

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+L++MY KCG +  +L VF     R       D V W +M+  Y  +G   E ++++E 
Sbjct: 120 STLVDMYAKCGDMPDSLLVFEKVEKR-------DFVSWNAMICGYALHGLGVEALRMFER 172

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M      P+   FV V+ ACSH G    G  YF  M   YKLEP  EH++C+VD+L R+ 
Sbjct: 173 MQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSK 232

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
              +A K IN M       +   +W  LLS C      E+ +LAA   L LDP +  +Y+
Sbjct: 233 GPQEAVKFINSM----PFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYI 288

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +LSN+YA+   W ++ + R L+K+  LKK+ GCSWIEV
Sbjct: 289 LLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEV 326



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + +N ++S F  N     A K FS M   G+  D +   + L    ++     GKQ+   
Sbjct: 47  VSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQ 106

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           + K   L   ++ S L+D+YAK   + D+ L+F+++  ++ V  NA++ GY    L    
Sbjct: 107 IIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEA 166

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG-RQVHAYMIRKCCNLGNDVFMQSSL 230
           L +   M    +  +H T  A+LRAC+ +   + G R  H  ++     L   +   + +
Sbjct: 167 LRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFH--LMTTHYKLEPQLEHFACM 224

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           +++ G+     +A++  N            D V+W ++L +
Sbjct: 225 VDILGRSKGPQEAVKFIN------SMPFQADAVIWKTLLSI 259


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 214/403 (53%), Gaps = 17/403 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RN + +  +IS + R+G    A+ TF  +H+ G+  D+  L + L   +  ++   G
Sbjct: 203 MTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSECRNLELG 262

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            Q+   V K G+  +V +G+AL+DLYAK   +  A ++FD +  K     NA+L+G+ E 
Sbjct: 263 LQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNAILAGFMEN 322

Query: 166 KLWAGGLELVRLMPALGLD---YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
               G  + + L     LD    D  T S LL   A  S    GR  HAY I+       
Sbjct: 323 S-RDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKT--GFEA 379

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D+ + +++I MY KCG + +A ++FN+         + D + W +M+  Y  +G   +V+
Sbjct: 380 DLSVANAVITMYAKCGSIEEAHRMFNVMN-------DHDSISWNAMISAYALHGQGAKVL 432

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L+E M+     PDE+  ++++ AC+++G  + GI  F  M   Y ++P  EHY+C+VDL
Sbjct: 433 LLFEEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKYGIKPLLEHYACMVDL 492

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG L +A  +IN    +   S S  +W  L++ C  CG    GKLA++  LEL P  
Sbjct: 493 LGRAGHLSEAMDIIN----KSPFSKSTLLWRTLVNVCKLCGDRNFGKLASKYLLELSPVE 548

Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            G Y+++SN+YA   M DE  ++R +M +  L K+ G SWIE+
Sbjct: 549 AGSYILVSNMYAGERMLDEAAKVRTVMNDLKLSKEAGTSWIEI 591



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 156/338 (46%), Gaps = 31/338 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR-FGKQ 107
           RN + +  +I  +  +     AL   S MH  G  L+ +  CS +  + S  D R FG+Q
Sbjct: 4   RNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHT-CSVILQACSSPDYRIFGQQ 62

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
               V K G+  +V VG++LI +Y +  L  DAE +FD +  K+  C N ++  Y  A  
Sbjct: 63  FHCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGN 122

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               + +   M   GL  + +T + ++ AC G    E G Q      +      N+  + 
Sbjct: 123 GEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKY--GFLNETSIG 180

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +++I MYGK G+  +A ++F+          +++++ WT+++  Y R+G  K+ +  +  
Sbjct: 181 NAIINMYGKKGMAREAERMFS-------AMTDRNLISWTALISGYTRSGDGKKAVDTFME 233

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC-------LV 340
           + + G   D     T++  CS    ++LG++     +H   ++ G   Y+C       LV
Sbjct: 234 LHLCGVNFDSSLLTTILDGCSECRNLELGLQ-----IHGLVIKLG---YACAVNIGTALV 285

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           DL  + G L  A      M+  G  S  ++ + A+L+ 
Sbjct: 286 DLYAKCGNLMSA-----RMVFDGLSSKRIASFNAILAG 318



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 18/250 (7%)

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
           V+N++   +L+ GY +   +   L +   M   G   +  T S +L+AC+      FG+Q
Sbjct: 3   VRNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQ 62

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
            H ++I+  C    +V + +SLI MY +  L   A +VF+           KDV  +  M
Sbjct: 63  FHCFVIK--CGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMAC-------KDVRCFNFM 113

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y R G  ++ I+++  ML  G +P++  F  +ISAC     ++ G E F  +   Y 
Sbjct: 114 ILEYARAGNGEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEG-EQFLGLSFKYG 172

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
                   + ++++  + G   +A ++ + M DR     ++  W AL+S     G    G
Sbjct: 173 FLNETSIGNAIINMYGKKGMAREAERMFSAMTDR-----NLISWTALISGYTRSGD---G 224

Query: 389 KLAAQKALEL 398
           K A    +EL
Sbjct: 225 KKAVDTFMEL 234


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 187/337 (55%), Gaps = 31/337 (9%)

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAKLW 168
           AH  K+     V   +A+I  Y K   +  AE MF ++ VK N V  NA++SGY E    
Sbjct: 206 AHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRP 265

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
             GL+L R M   G+  +   LS+ L  C+ LSA   GRQ+H                  
Sbjct: 266 EDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQ----------------- 308

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
             I MY KCG +  A ++F       E    KDVV W +M+  Y ++G  ++ + L+  M
Sbjct: 309 --IVMYCKCGELGDAWKLF-------EAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEM 359

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             + TKPD + FV V+ AC+H G V +G+ YF+ MV DY++EP P+HY+C+VDLL RAG+
Sbjct: 360 RDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGK 419

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           +++A KLI  M  R H     +++G LL AC      EL + AA+K LELDP N   YV 
Sbjct: 420 VEEALKLIRSMPFRPHA----AVFGTLLGACRVHKNVELAEFAAEKLLELDPRNAAGYVQ 475

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L+N+YA   +W+++ ++R+ MKE  + K  G SWIE+
Sbjct: 476 LANIYASKNLWEDVARVRKRMKESNVVKVPGYSWIEI 512



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 134/339 (39%), Gaps = 54/339 (15%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
            P N +I+   R+G    AL  F     HG+        +SL    S   +R    ++AH
Sbjct: 62  FPLNKIIATRVRSGDIDGALSVF-----HGMRAKNTVSWNSLLVGISKDPSRM---MEAH 113

Query: 112 -VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            +         F  + ++  Y +      A+  F+ +P K++   N +++GY       G
Sbjct: 114 QLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYAR----RG 169

Query: 171 GLELVRLMPALGLDYDHFTLSALLRA---CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
            +E  R++    ++ +  + +A++     C  L  A       A+  +     G  V   
Sbjct: 170 EMEKARVLFYSMMEKNEVSWNAMISGYIECGDLEKA-------AHFFKAAPFRG--VVAW 220

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +++I  Y K   V  A  +F       +  + K++V W +M+  Y  N   ++ +KL+ A
Sbjct: 221 TAMITGYMKAKKVELAEAMFK------DMTVKKNLVTWNAMISGYVENSRPEDGLKLFRA 274

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           ML  G +P+     + +  CS    + LG +     +H              + + C+ G
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALCLGRQ-----IHQ-------------IVMYCKCG 316

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           EL  AWKL   M  +      V  W A++S     G  E
Sbjct: 317 ELGDAWKLFEAMKKK-----DVVAWNAMISGYAQHGNAE 350


>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
          Length = 591

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 205/361 (56%), Gaps = 17/361 (4%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           TY+ C+ L  + S+  AR G+QV   V K+G+   + V S L+D+Y+K  L+ DA  +F 
Sbjct: 225 TYS-CALLACARSLA-AREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFR 282

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
                + V    +L G+ +  L     EL   M   G + D  T+SA+L A    +    
Sbjct: 283 SCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFAL 342

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVL 264
           G+Q+HA +I++C   G + ++ + L+ MY KCG + ++++VF+        E+ +K+ V 
Sbjct: 343 GKQIHALVIKRC--FGVNTYVCNGLVNMYSKCGELRESVRVFD--------EMPSKNSVS 392

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W S++  + R+G+  EV +L+E+M  +G KP +V F++++ ACSH G  K G+E    M 
Sbjct: 393 WNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMS 452

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
             Y + P  EHY+C+VD+L RAG LD A   I +    G  + +  +W AL+ AC   G 
Sbjct: 453 SQYGVLPRMEHYACVVDMLGRAGLLDDAKSFIED----GPFTDNALLWQALMGACSFHGN 508

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            E+GK AA+K L LDP     YV+LSN+Y+    WD+  ++ + M E GL+KD G SWIE
Sbjct: 509 SEVGKYAAEKLLLLDPSCTAAYVLLSNIYSSEGRWDDRAKVMKRMSEMGLRKDTGKSWIE 568

Query: 445 V 445
           +
Sbjct: 569 L 569



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 20/273 (7%)

Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
           V   V   G+ + V VG+AL+  Y +      AE +F  +  KN +   A++SG   A+L
Sbjct: 145 VHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAEL 204

Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
           +     L   M    +D ++ T S  L ACA   AA  G+QVH  +++      +D+ ++
Sbjct: 205 YKESFSLFGQMIRT-VDANNATYSCALLACARSLAAREGQQVHGLVVK--AGFEDDLHVE 261

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S L+++Y KCGL+  AL VF             D V  T +L  + +NG  ++  +L+  
Sbjct: 262 SGLMDVYSKCGLMEDALTVFRSCRE-------PDEVFLTVILVGFAQNGLEEKAFELFAE 314

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVDLLCR 345
           M+  G + DE     V+ A   +    LG +    ++   K   G   Y C  LV++  +
Sbjct: 315 MVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVI---KRCFGVNTYVCNGLVNMYSK 371

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            GEL ++ ++ +EM  +    +SVS W ++++A
Sbjct: 372 CGELRESVRVFDEMPSK----NSVS-WNSIIAA 399



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 119/255 (46%), Gaps = 16/255 (6%)

Query: 20  QSRLMLPYTTCRHKKNLGTLTNCLK-FLNPRNP--LPFNVVISDFCRNGSPLYALKTFSF 76
           +S LM  Y+ C      G + + L  F + R P  +   V++  F +NG    A + F+ 
Sbjct: 261 ESGLMDVYSKC------GLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAE 314

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G  +D   + + L A  +      GKQ+ A V K  +  + +V + L+++Y+K   
Sbjct: 315 MVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGE 374

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + ++  +FDE+P KNSV  N++++ +      +   +L   M A G      T  +LL A
Sbjct: 375 LRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHA 434

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           C+ + +A+ G ++   M  +   L   +   + +++M G+ GL+  A           +G
Sbjct: 435 CSHVGSAKKGLEILNSMSSQYGVLPR-MEHYACVVDMLGRAGLLDDAKSFIE------DG 487

Query: 257 EINKDVVLWTSMLGV 271
               + +LW +++G 
Sbjct: 488 PFTDNALLWQALMGA 502



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 35/285 (12%)

Query: 86  TYALCSSLTASTSVK-DARFGKQVQAHVTKSG----------WLSSVFVG-SALIDLYAK 133
            YA  S L AS   + D R G  + A V K+           WL  V V  ++L+ +YA+
Sbjct: 10  NYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYAR 69

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG-GLELVRLM-PALGLDYDHFTLS 191
                DA  +FDE+ V+++V  N+L++    A   AG  L L R M  +     D  T +
Sbjct: 70  CGRREDAARVFDEMRVRDAVSWNSLIA----ASRGAGDALALFRRMLRSDARACDRATFT 125

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
            +L  CA   AA        + +   C    +V + ++L+  Y +CG    A +VF+   
Sbjct: 126 TVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFH--- 182

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
               G   K+V+ WT+M+    R   +KE   L+  M+      +   +   + AC+ + 
Sbjct: 183 ----GMAEKNVITWTAMISGMARAELYKESFSLFGQMIRT-VDANNATYSCALLACARSL 237

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKA 352
             + G +     VH   ++ G E      S L+D+  + G ++ A
Sbjct: 238 AAREGQQ-----VHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDA 277


>gi|242057857|ref|XP_002458074.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
 gi|241930049|gb|EES03194.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
          Length = 963

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/414 (33%), Positives = 224/414 (54%), Gaps = 22/414 (5%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLY-ALKTFSFMHVHGIFLDTYALCSS 92
           G +++C K  N     + + +N ++     + +P+   ++ F+ M   G+  +     + 
Sbjct: 496 GAMSDCWKVFNSMADHDEVSWNSMMGVMASSQAPISETVEVFNNMMRGGLIPNKVTFVNL 555

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKN 151
           L A + +     GKQ  A V K G +    V +ALI  YAK   ++  E +F  +   ++
Sbjct: 556 LAALSPLSVLELGKQFHAAVLKHGVMDDNVVDNALISCYAKSGDMNSCEHLFSNMSGRRD 615

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           +V  N+++SGY         ++ V LM   G   D  T S +L ACA ++A E G ++HA
Sbjct: 616 AVSWNSMISGYIYNGYLQEAMDCVWLMLHSGQIMDCCTFSIILNACASVAALERGMEMHA 675

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           + IR   +L +DV ++S+L++MY KCG V  A ++FN    R E         W SM+  
Sbjct: 676 FGIRS--HLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNE-------FSWNSMISG 726

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           Y R+G  ++ ++ +E ML +   PD V FV+V+SACSH G V+ G+EYFE M+ D+ + P
Sbjct: 727 YARHGLGRKALETFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFE-MMPDHGILP 785

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH---DCGKFELG 388
             EHYSC++DLL RAG++DK    I E + R     +  +W  +L AC    D  K ELG
Sbjct: 786 QIEHYSCVIDLLGRAGKIDK----IKEYIQRMPMKPNALIWRTVLVACRQSKDGSKIELG 841

Query: 389 KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
           + A +  LE++P N   YV+ SN +A   MW++  + R  M++  +KK+ G SW
Sbjct: 842 REALRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARAGMRQATVKKEAGRSW 895



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 144/338 (42%), Gaps = 54/338 (15%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDA-- 102
           L  +N +  N +I    +      A+K F    +   +  DTY +  S  A  S+ +   
Sbjct: 335 LKEKNAVTLNGLIVGLVKQHCSEEAVKIFVGTRNTIVVNADTYVVLLSAIAEYSIPEEGL 394

Query: 103 RFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           R GK+   H+ ++G     + V + L+++YAK   I  A  +F  +   + +  N ++S 
Sbjct: 395 RKGKEAHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIDSASKIFQLMEATDRISWNTIISA 454

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
                                LD +            GL     G+QVH   ++   +L 
Sbjct: 455 ---------------------LDQN------------GLKLLSAGQQVHCDAVKWGLDL- 480

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFN-LAGHRLEGEINKDVVLWTSMLGVYGRN-GYFK 279
            D  + + L++MYG+CG ++   +VFN +A H        D V W SM+GV   +     
Sbjct: 481 -DTSVSNVLVKMYGECGAMSDCWKVFNSMADH--------DEVSWNSMMGVMASSQAPIS 531

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E ++++  M+  G  P++V FV +++A S    ++LG + F   V  + +       + L
Sbjct: 532 ETVEVFNNMMRGGLIPNKVTFVNLLAALSPLSVLELG-KQFHAAVLKHGVMDDNVVDNAL 590

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           +    ++G+++    L + M  R    S    W +++S
Sbjct: 591 ISCYAKSGDMNSCEHLFSNMSGRRDAVS----WNSMIS 624



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 16/212 (7%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + +   + K G    +F+ + L++ YAK   +  A  +FDE+P +N+V    LLSGY   
Sbjct: 80  ENLHVELIKRGLNHDLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQ 139

Query: 166 KLWAGGLELVRLM---PALGLDYDHFTLSALLRAC--AGLSAAEFGRQVHAYMIRKCCNL 220
            +      + R M      G     FT   LLRAC   G     F  QVH  + +     
Sbjct: 140 GITEEAFRVFRAMLREVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSK--TEY 197

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
            ++  + ++LI MYG C +         LA    +G   +D++ W +++ VY + G    
Sbjct: 198 ASNTTVCNALISMYGSCTVGPPI-----LAQRVFDGTPIRDLITWNALMSVYAKKGDVVS 252

Query: 281 VIKLYEAMLMNGT----KPDEVAFVTVISACS 308
              L+  M    +    +P E  F ++I+A S
Sbjct: 253 TFTLFMDMQREDSRIQLRPTEHTFGSLITATS 284



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 20/238 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLD---TYALCSSLTASTSVKDARFG 105
           R+ + +N ++S + + G  +     F  M      +    T     SL  +TS+      
Sbjct: 232 RDLITWNALMSVYAKKGDVVSTFTLFMDMQREDSRIQLRPTEHTFGSLITATSLSSGSSA 291

Query: 106 --KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
              QV   V KSG  S ++VGSAL+  +A+  LI +A+ +F  +  KN+V  N L+ G  
Sbjct: 292 VLDQVFVSVLKSGCSSDLYVGSALVSAFARHGLIDEAKDIFLSLKEKNAVTLNGLIVGLV 351

Query: 164 EAKLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAE----FGRQVHAYMIRKCC 218
           +       +++ V     + ++ D + +  LL A A  S  E     G++ H +M+R   
Sbjct: 352 KQHCSEEAVKIFVGTRNTIVVNADTYVV--LLSAIAEYSIPEEGLRKGKEAHGHMLRTGL 409

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
                + + + L+ MY KCG +  A ++F L    +E     D + W +++    +NG
Sbjct: 410 T-DLKIAVSNGLVNMYAKCGAIDSASKIFQL----MEA---TDRISWNTIISALDQNG 459



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 17/142 (11%)

Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
           H  L  LLR      AA     +H  +I++   L +D+F+ + L+  Y K   +  A +V
Sbjct: 62  HADLVLLLRRRG--DAANSPENLHVELIKR--GLNHDLFLSNHLVNSYAKGARLAAASRV 117

Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN---GTKPDEVAFVTV 303
           F+    R       + V WT +L  Y   G  +E  +++ AML     G +P    F T+
Sbjct: 118 FDEMPQR-------NAVSWTCLLSGYVLQGITEEAFRVFRAMLREVEPGCRPTSFTFGTL 170

Query: 304 ISACSHTGQVKLGIEYFEWMVH 325
           + AC   G  +LG   F   VH
Sbjct: 171 LRACQDGGPDRLG---FATQVH 189


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 204/394 (51%), Gaps = 13/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           FN +   + R+ +PL     F  +    +  D Y   S L A    K    G+Q+     
Sbjct: 99  FNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSM 158

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G   +V+V   LI++Y +   +  A  +FD I     VC NA+++GY         L 
Sbjct: 159 KLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALS 218

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R M    L  +  TL ++L +CA L + + G+ +H Y  +        V + ++LI+M
Sbjct: 219 LFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKH--GFCKYVKVNTALIDM 276

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           + KCG +  A+ +F       E    KD   W++M+  Y  +G  +  + ++E M     
Sbjct: 277 FAKCGSLDDAVSIF-------ENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENV 329

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +PDE+ F+ +++ACSHTG V+ G EYF WMVH++ + P  +HY  +VDLL RAG L+ A+
Sbjct: 330 QPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAY 389

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
               E +D+   S +  +W  LL+AC      EL +  +++ LELD  + G YV+LSNLY
Sbjct: 390 ----EFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLY 445

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A+   W+ +  LR++MK++   K  GCS IEV  
Sbjct: 446 ARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNN 479



 Score = 42.0 bits (97), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 106/262 (40%), Gaps = 45/262 (17%)

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           Q+ AY I+   +   DV   + LI    +    +      + A H  +     D+V++ S
Sbjct: 49  QIQAYAIK---SHQEDVSFNTKLINFCTE----SPTESSMSYARHLFDAMSEPDIVIFNS 101

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQVKLG 316
           +   Y R+    EV  L+  +L +   PD   F +++ AC+           H   +KLG
Sbjct: 102 IARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLG 161

Query: 317 IE------------YFE-------WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           ++            Y E         V D  +EP    Y+ ++    R    ++A  L  
Sbjct: 162 VDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFR 221

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS----NLY 413
           EM  +    + +++  ++LS+C   G  +LGK   + A +   H    YV ++    +++
Sbjct: 222 EMQGKNLKPNEITLL-SVLSSCALLGSLDLGKWIHEYAKK---HGFCKYVKVNTALIDMF 277

Query: 414 AKFCMWDEIGQLRELMKEKGLK 435
           AK    D+   + E M+ K  +
Sbjct: 278 AKCGSLDDAVSIFENMRYKDTQ 299


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/411 (33%), Positives = 205/411 (49%), Gaps = 46/411 (11%)

Query: 71  LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL 130
           +  F  M  HG+  D +     L +  S      G+ V A + + G     FV ++LI +
Sbjct: 49  ISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISM 108

Query: 131 YAKLLLIHDAELMFDEIPV-------------------------------KNSVCANALL 159
           Y+    +  A  +FDEIP                                +N +  + ++
Sbjct: 109 YSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMI 168

Query: 160 SGYCEAKLWAGGLELVRLMPALGLD---YDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           +GY     +   L L R M  LG++    + FT+S +L AC  L A E G+  HAY+ + 
Sbjct: 169 NGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDK- 227

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
            C +  DV + ++LI+MY KCG V KA  VF+  G       NKDV+ W++M+     +G
Sbjct: 228 -CGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGP------NKDVMAWSAMISGLAMHG 280

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
             +E + L+  M+  G +P+ V F+ V  AC H G V  G +Y   M  DY + P  +HY
Sbjct: 281 LAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHY 340

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
            C+VDL  RAG + +AW ++  M         V +WGALLS     G  E  +LA +K +
Sbjct: 341 GCMVDLYGRAGRIKEAWNVVKSM----PMEPDVLVWGALLSGSRMHGDIETCELALKKLI 396

Query: 397 ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           EL+P N G YV+LSN+YAK   W+++  +R+LM+  G+KK  GCS IEV G
Sbjct: 397 ELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGG 447



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 15/235 (6%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH---VHGIFLDTYALCSSLTAST 97
           N    +  RN + ++ +I+ + R G    AL  F  M    V+ +  + + +   L A  
Sbjct: 151 NLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACG 210

Query: 98  SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI-PVKNSVCAN 156
            +     GK   A++ K G    V +G+ALID+YAK   +  A  +F  + P K+ +  +
Sbjct: 211 RLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWS 270

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           A++SG     L    + L   M   G+  +  T  A+  AC        G+    Y+ R 
Sbjct: 271 AMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKD---YLRRM 327

Query: 217 CCNLGNDVFMQ--SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
             +      +Q    ++++YG+ G + +A  V           +  DV++W ++L
Sbjct: 328 TEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVK------SMPMEPDVLVWGALL 376


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/433 (30%), Positives = 231/433 (53%), Gaps = 24/433 (5%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCL---KFLNPRNPLPFNVVISDFCRNGSPLYALKT 73
           +  ++ L+  YT C      G L++ L   + +  R    +N +I  F +N     AL+ 
Sbjct: 257 VDIRNALISMYTKC------GCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRI 310

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  M +HG+  D   L S L+A   + + R G  V +++  +G      + ++LI++YAK
Sbjct: 311 FEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAK 370

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  AE +F  +  K+ V    ++ GY +   +     L   M    +      L +L
Sbjct: 371 CGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSL 430

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L AC+ L A + GR++H+Y+  +  N+  D+ ++S+L++MY KCG +  A ++F    H 
Sbjct: 431 LSACSQLGALDKGREIHSYI--EEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQH- 487

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQ 312
                 K  + W +M+G    NGY KE ++L++ ML +   KPD +    V+ AC+H G 
Sbjct: 488 ------KQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGM 541

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
           V  G+ YF +++    + P  EHY C+VDLL RAG LD+A+  I +M        +  +W
Sbjct: 542 VDEGLRYF-YLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIE----PNPVIW 596

Query: 373 GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
           G+LL+AC    + +LGK+  Q  + + P++VG++V++SNL+A+   WD++  +R LM  +
Sbjct: 597 GSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSR 656

Query: 433 GLKKDVGCSWIEV 445
           G++K  G S ++V
Sbjct: 657 GIEKTPGHSSVQV 669



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 158/320 (49%), Gaps = 21/320 (6%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF---GK 106
           N   +N +I  +    +P  AL  F  M   G+  D Y + + ++AS +    ++   G 
Sbjct: 82  NAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGD 141

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
            + A V + G+ S VFV S L++ Y     + +A  +F+E+  ++ V   +++S   +  
Sbjct: 142 AIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCG 201

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
            W   L+++  M A G+  +  T+ +LL AC    A + GR V+  + +    +  DV +
Sbjct: 202 HWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGK--FGIEADVDI 259

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           +++LI MY KCG ++ AL+ F     R           W +++  + +N   KE ++++E
Sbjct: 260 RNALISMYTKCGCLSDALEAFQAMPARYTKS-------WNTLIDGFVQNHEHKEALRIFE 312

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDL 342
            ML++G  PD +  V+V+SAC+  G+++ G+      VH Y  + G        + L+++
Sbjct: 313 EMLLHGVTPDGITLVSVLSACAQLGELRKGMH-----VHSYIKDNGICCDNILTNSLINM 367

Query: 343 LCRAGELDKAWKLINEMLDR 362
             + G++  A ++   M  +
Sbjct: 368 YAKCGDMAAAERVFQTMTKK 387



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 162/368 (44%), Gaps = 36/368 (9%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +IS   + G     LK  S M   GI  +   + S L+A    +    G+ V
Sbjct: 185 RDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWV 244

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K G  + V + +ALI +Y K   + DA   F  +P + +   N L+ G+ +    
Sbjct: 245 YNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEH 304

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK--CCNLGNDVFM 226
              L +   M   G+  D  TL ++L ACA L     G  VH+Y+     CC    D  +
Sbjct: 305 KEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICC----DNIL 360

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +SLI MY KCG +  A +VF       +    KDVV WT M+  Y +   F     L+E
Sbjct: 361 TNSLINMYAKCGDMAAAERVF-------QTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFE 413

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIE---YFEWM--VHDYKLEPGPEHYSCLVD 341
            M +      E+A V+++SACS  G +  G E   Y E M    D  LE      S LVD
Sbjct: 414 EMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLE------SALVD 467

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ---KALEL 398
           +  + G +D A ++  +M  +   S     W A++      G    GK A +   + LEL
Sbjct: 468 MYAKCGCIDTASEIFRKMQHKQTLS-----WNAMIGGLASNG---YGKEAVELFDQMLEL 519

Query: 399 -DPHNVGI 405
            DP   GI
Sbjct: 520 QDPKPDGI 527



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 121/264 (45%), Gaps = 21/264 (7%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD---AELMFDEIPVKNSVCANALLSG 161
           G+ V+AH+T     S  FV   LI L A     HD   A  +FD +   N+   N ++ G
Sbjct: 38  GRLVRAHLT-----SDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRG 92

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLS---ALLRACAGLSAAEFGRQVHAYMIRKCC 218
           Y   +     L + R M   G+  D++T++   +   A AGL     G  +HA + R   
Sbjct: 93  YSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRR--I 150

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
              +DVF+ S L+  YG    V +A +VF       E    +DVV WTSM+    + G++
Sbjct: 151 GFTSDVFVMSGLVNYYGAFRSVEEASKVF-------EEMYERDVVSWTSMISACAQCGHW 203

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
            +V+K+   M   G  P++V  ++++SAC  T  V  G   +   V  + +E   +  + 
Sbjct: 204 DKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYN-QVGKFGIEADVDIRNA 262

Query: 339 LVDLLCRAGELDKAWKLINEMLDR 362
           L+ +  + G L  A +    M  R
Sbjct: 263 LISMYTKCGCLSDALEAFQAMPAR 286


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 201/360 (55%), Gaps = 25/360 (6%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           TY+  S L A  ++ D   G+QV AHV KS   ++  VG+AL+ +YA+   + +A  +F 
Sbjct: 361 TYS--SILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVF- 417

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
                N +   +++S   E +       L   +  + +     T ++L+ A A +     
Sbjct: 418 -----NQLYERSMISCITEGR----DAPLDHRIGRMDMGISSSTFASLISAAASVGMLTK 468

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G+Q+HA  ++     G+D F+ +SL+ MY +CG +  A + FN    R       +V+ W
Sbjct: 469 GQQLHAMTLK--AGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDR-------NVISW 519

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           TSM+    ++GY +  + L+  M++ G KP++V ++ V+SACSH G V+ G EYF  M  
Sbjct: 520 TSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQR 579

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           D+ L P  EHY+C+VDLL R+G + +A + INEM  +    +   +W  LL AC      
Sbjct: 580 DHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLK----ADALVWKTLLGACRSHDNI 635

Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           E+G++AA+  +EL+P +   YV+LSNLYA   +WDE+ ++R  M++  L K+ G SW+EV
Sbjct: 636 EVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEV 695



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 162/358 (45%), Gaps = 51/358 (14%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +L +       L  +  + + ++IS + +      A++ F      G   D Y + S ++
Sbjct: 203 DLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMIS 262

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEIPVKN 151
           A T +   R G Q+ +   + G+ S   V   L+D+YAK  +   +  A  +F+ +   +
Sbjct: 263 ACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKND 322

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALG------LDYDHFTLSALLRACAGLSAAEF 205
            +   AL+SGY ++     G++  ++M   G      +  +H T S++L+ACA +S  + 
Sbjct: 323 VISWTALISGYVQS-----GVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDS 377

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           GRQVHA++I+   N      + ++L+ MY + G + +A +VFN    R            
Sbjct: 378 GRQVHAHVIKS--NQAAAHTVGNALVSMYAESGCMEEARRVFNQLYER------------ 423

Query: 266 TSMLG--VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            SM+     GR+      I   +  + + T      F ++ISA +  G +  G +     
Sbjct: 424 -SMISCITEGRDAPLDHRIGRMDMGISSST------FASLISAAASVGMLTKGQQ----- 471

Query: 324 VHDYKLEP--GPEHY--SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           +H   L+   G + +  + LV +  R G L+ A +  NE+ DR     +V  W +++S
Sbjct: 472 LHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDR-----NVISWTSMIS 524



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 20/283 (7%)

Query: 101 DARFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVCANAL 158
           D R G+ +   + +   L     V ++L+ LY++   +  A  +FD +  +++ V   A+
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAM 122

Query: 159 LSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
            S           L L+  M   GL  + +TL A+  AC           V   ++ K  
Sbjct: 123 ASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMG 182

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
             G D+ + S+LI+M  + G +  A +VF       +G I K VV+WT ++  Y +    
Sbjct: 183 LWGTDIAVGSALIDMLARNGDLASARKVF-------DGLIEKTVVVWTLLISRYVQGECA 235

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           +E ++++   L +G +PD     ++ISAC+  G V+LG++     +H   L  G    +C
Sbjct: 236 EEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQ-----LHSLALRMGFASDAC 290

Query: 339 ----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
               LVD+  ++  +++A    N++ +R   +  +S W AL+S
Sbjct: 291 VSCGLVDMYAKSN-IEQAMDYANKVFERMRKNDVIS-WTALIS 331



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 9/191 (4%)

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           GI   T+A  S ++A+ SV     G+Q+ A   K+G+ S  FV ++L+ +Y++   + DA
Sbjct: 447 GISSSTFA--SLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDA 504

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
              F+E+  +N +   +++SG  +       L L   M   G+  +  T  A+L AC+ +
Sbjct: 505 CRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHV 564

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                G++    M R    L   +   + ++++  + GLV +AL+  N      E  +  
Sbjct: 565 GLVREGKEYFRSMQRD-HGLIPRMEHYACMVDLLARSGLVKEALEFIN------EMPLKA 617

Query: 261 DVVLWTSMLGV 271
           D ++W ++LG 
Sbjct: 618 DALVWKTLLGA 628


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/414 (31%), Positives = 219/414 (52%), Gaps = 32/414 (7%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ-VQAHV 112
           +N +I  + + G    AL+ F+ M      + +    + +  S +  +   GK+ V  +V
Sbjct: 341 WNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYV 400

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
            K G   + FV +AL+DLYA+L  +  A  +F  I  ++ V  N L++G           
Sbjct: 401 VKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDAF 460

Query: 173 ELVRLMPALGLDYD------------------HFTLSALLRACAGLSAAEFGRQVHAYMI 214
           +LVR M   G   D                  + TL  LL  CA L+A   G+++H Y +
Sbjct: 461 QLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPARGKEIHGYAV 520

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           R    L +DV + S+L++MY KCG +  +  VF+    RL     ++V+ W  ++  YG 
Sbjct: 521 RHA--LDSDVAVGSALVDMYAKCGCLALSRAVFD----RLP---RRNVITWNVLIMAYGM 571

Query: 275 NGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           +G   E I L++ M+ +   KP+EV F+  ++ACSH+G V  G+E F  M  ++ +EP P
Sbjct: 572 HGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSMKRNHGVEPTP 631

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           + ++C VD+L RAG LD+A+++I+ M     G   VS W + L AC       LG++AA+
Sbjct: 632 DLHACAVDILGRAGRLDEAYRIISSM---EPGEQQVSAWSSFLGACRLHRNVALGEIAAE 688

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +  EL+P     YV+L N+Y+   +W++  ++R  M+++G+ K+ GCSWIE+ G
Sbjct: 689 RLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWIELDG 742



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 152/318 (47%), Gaps = 15/318 (4%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS--SVFVGSALIDLYAKLLLIHDAE 141
           LD +AL  +  ++ +++     + +     +   L   +  V +AL+  YA+   +  A 
Sbjct: 55  LDRFALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAAL 114

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            +FD +P +++V  N+L++  C  + W   L+ +R M   G     FTL ++L AC+ L+
Sbjct: 115 ALFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLA 174

Query: 202 AA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                GR+ HA+ ++     G++ F  ++L+ MY + GLV  A  +F   G         
Sbjct: 175 EDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVG--ATDVPGG 232

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
            VV W +M+ +  ++G   E I++   M+  G +PD V F + + ACS    + LG E  
Sbjct: 233 GVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMH 292

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
            +++ D  L       S LVD+   + E   A +L+ +M+  G     + +W A++    
Sbjct: 293 AYVLKDADLAANSFVASALVDMYA-SHERVGAARLVFDMVPAGE--RQLGLWNAMI---- 345

Query: 381 DCGKFELGKLAAQKALEL 398
            CG  + G    + ALEL
Sbjct: 346 -CGYAQAG--LDEDALEL 360


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/433 (32%), Positives = 220/433 (50%), Gaps = 45/433 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN + +N +I  F + G+ L  L+ F  M  HG+  D + +   L     + + + G
Sbjct: 189 MSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLG 248

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD-------------------- 145
           K V A + KS   S++ + +AL+D+Y K   +  A  +FD                    
Sbjct: 249 KSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKV 308

Query: 146 -----------EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
                      +IP ++ V  N+L+SGY +   +     L   M A  +  D  T+  L+
Sbjct: 309 GELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLI 368

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            A A + A + GR +H   ++    +  + F  S+LI+MY KCG + +A  +FN      
Sbjct: 369 SAVAEMGALDQGRWIHGLAVKMLTKI--EAFSGSALIDMYCKCGSIERAFVIFNQIPE-- 424

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                KDV  WT+M+  +  +G+  + ++L+  M    TKP++V FV+V++ACSH+G V 
Sbjct: 425 -----KDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVD 478

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G++ F  M   Y +EPG EHY CLVDLLCR+G L  A  +I +M        S S+WGA
Sbjct: 479 EGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKM----PMEPSRSIWGA 534

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           +LSAC      EL + A  + L+L+P   G Y++LSN+YA    W     +RE+M  +G+
Sbjct: 535 VLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGV 594

Query: 435 KKDVGCSWIEVTG 447
           KK  GCS + V G
Sbjct: 595 KKIAGCSSVAVDG 607



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 189/424 (44%), Gaps = 55/424 (12%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF---M 77
           SRL+  ++   H +NL      +   N   P P N+ I +    G P    K F+    M
Sbjct: 67  SRLLF-FSAVSHPENLEL---AILLFNHFTPYP-NLYIFNTMILGFPFSNEKAFTIYRSM 121

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLL 136
             +G + D       L  +  V +    KQ+  H    G LS   ++ ++LI  Y     
Sbjct: 122 LQNGTYPDRQTFLYLLQTTKFVAEV---KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGC 178

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
              A  +FDE+  +N V  N ++ G+ +     G LEL   M + GL+ D FT+  LL  
Sbjct: 179 FECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLL 238

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------- 248
           C  L   + G+ VHA  I K     N + + ++L++MY KC  +  A +VF+        
Sbjct: 239 CGQLGETKLGKSVHA-QIEKSIGSSN-LILYNALLDMYVKCNELKLARKVFDGPMEKDTV 296

Query: 249 -----LAGHRLEGEI-----------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
                +AG+   GE+            +D+V W S++  Y +NG +  V  L+  M    
Sbjct: 297 SWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAEN 356

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD--YKLEPGPEHY--SCLVDLLCRAGE 348
            KPD+V  V +ISA +  G +  G     W +H    K+    E +  S L+D+ C+ G 
Sbjct: 357 VKPDKVTIVNLISAVAEMGALDQG----RW-IHGLAVKMLTKIEAFSGSALIDMYCKCGS 411

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIY 406
           +++A+ + N++ ++      V+ W  +++  A H  G   L   +  +A E  P++V   
Sbjct: 412 IERAFVIFNQIPEK-----DVTTWTTMITGFAFHGFGNKALELFSVMQA-ETKPNDVTFV 465

Query: 407 VMLS 410
            +L+
Sbjct: 466 SVLA 469


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/401 (32%), Positives = 212/401 (52%), Gaps = 12/401 (2%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +N +I+ +  N     AL+ F  M    +  D   L S L+A         G
Sbjct: 175 ITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELG 234

Query: 106 KQVQAHVTKS-GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           +++   V    G+ SS+ + +A I LY+K   +  A  +F+ +  K+ V  N L+ GY  
Sbjct: 235 REIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTH 294

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
             L+   L L + M   G   +  T+ ++L ACA L A + GR +H Y+ ++   + N  
Sbjct: 295 MNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGS 354

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            +++SLI+MY KCG +  A QVFN   H       K +  W +M+  +  +G       L
Sbjct: 355 ALRTSLIDMYAKCGDIEAAHQVFNSMMH-------KSLSSWNAMIFGFAMHGRANAAFDL 407

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +  M  NG +PD++  V ++SACSH+G + LG   F+ +  DY + P  EHY C++DLL 
Sbjct: 408 FSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLG 467

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
            AG   +A ++I+ M     G     +W +LL AC   G  EL +  AQK +E++P N G
Sbjct: 468 HAGLFKEAEEIIHMMPMEPDG----VIWCSLLKACKMHGNLELAESFAQKLMEIEPENSG 523

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            YV+LSN+YA    W+++ ++RE++  KG+KK  GCS IE+
Sbjct: 524 SYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEI 564



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 178/412 (43%), Gaps = 57/412 (13%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
            HA   +TGL      +  S+L+       H   L    +  +     N L +N ++   
Sbjct: 1   THAQMVKTGLHNTNYAL--SKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGL 58

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             +   +  L+ +  M   G   + Y     L +    K    G+Q+ A V K G     
Sbjct: 59  ASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDR 118

Query: 122 FVGSALIDLYAKLLLIHDAELMFDE-------------------------------IPVK 150
           +  ++LI +YA+   + DA  +FD                                I  +
Sbjct: 119 YAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITER 178

Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
           + V  NA+++GY E   +   LEL + M    +  D  TL ++L ACA   + E GR++H
Sbjct: 179 DVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIH 238

Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
             ++      G+ + + ++ I +Y KCG V  A  +F       EG   KDVV W +++G
Sbjct: 239 T-LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLF-------EGLSCKDVVSWNTLIG 290

Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--- 327
            Y     +KE + L++ ML +G  P++V  ++V+ AC+H G + +G     W +H Y   
Sbjct: 291 GYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIG----RW-IHVYIDK 345

Query: 328 ---KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
               +  G    + L+D+  + G+++ A ++ N M+ +     S+S W A++
Sbjct: 346 RLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHK-----SLSSWNAMI 392


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/427 (32%), Positives = 223/427 (52%), Gaps = 18/427 (4%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           S L+  Y  C    +   +  C+     R+ +  N +I+ + +      A+  F  M V 
Sbjct: 568 SSLIDMYAKCGAIDSAHKILACMP---ERSVVSMNALIAGYAQINLE-QAVNLFRDMLVE 623

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG-WLSSVFVGSALIDLYAKLLLIHD 139
           GI        S L A    +    G+Q+ + + K G  L   F+G +L+ +Y   L   D
Sbjct: 624 GINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTD 683

Query: 140 AELMFDEIP-VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           A ++F E    K++V   A++SG  +       L+L + M +  +  D  T  + LRACA
Sbjct: 684 ASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACA 743

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            +S+ + G + H+ +        +D    S+L++MY KCG V  ++QVF       E   
Sbjct: 744 VVSSIKDGTETHSLIFH--TGFDSDELTSSALVDMYAKCGDVKSSMQVFK------EMSR 795

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            KDV+ W SM+  + +NGY ++ +++++ M  +   PD+V F+ V++ACSH+G+V  G  
Sbjct: 796 KKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRL 855

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            F+ MV+ Y ++P  +H +C+VDLL R G L +A + IN++    +      +W  +L A
Sbjct: 856 IFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKL----NFEPDAKVWATMLGA 911

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           C   G    G+ AA+K +EL+P N   YV+LSN+YA    WDE+  LR  M+EKG+KK  
Sbjct: 912 CRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKKLP 971

Query: 439 GCSWIEV 445
           GCSWI V
Sbjct: 972 GCSWIVV 978



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 194/415 (46%), Gaps = 56/415 (13%)

Query: 35  NLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
           +LG L N     +    RN + +N++IS   + G  + A++ F  M   GI      L S
Sbjct: 273 DLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGS 332

Query: 92  SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
            L+A  S+    FG  V A   K G  S+V+VGS+L+ +YAK   +  A+ +FD +  +N
Sbjct: 333 VLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQN 392

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
            V  NA+L GY +       +EL   M + G   D FT S++L ACA L   + G Q+H+
Sbjct: 393 VVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHS 452

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
            +I+      +++F+ ++L++MY K G +  A Q F L         N+D V W  ++  
Sbjct: 453 VIIKN--KFASNLFVGNALVDMYAKSGALEDARQQFELIR-------NRDNVSWNVIIVG 503

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           Y +     E   L+  M + G  PDEV+  +++SAC+    ++ G +     VH   ++ 
Sbjct: 504 YVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQ-----VHCLSVKT 558

Query: 332 GPEHY----SCLVDLLCRAGELDKAWK------------------------------LIN 357
           G E      S L+D+  + G +D A K                              L  
Sbjct: 559 GQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQINLEQAVNLFR 618

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGK----LAAQKALELDPHNVGIYVM 408
           +ML  G  S+ ++ + +LL ACH+  K  LG+    L  +  L+LD   +G+ ++
Sbjct: 619 DMLVEGINSTEIT-FASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLL 672



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 150/315 (47%), Gaps = 15/315 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHA   + GL     +   S L+  Y  C     +         LN +N + +N ++  +
Sbjct: 349 VHAEALKQGLH--SNVYVGSSLVSMYAKC---GKMEAAKKVFDTLNEQNVVLWNAMLGGY 403

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            +NG     ++ F  M   G + D +   S L+A   +K    G Q+ + + K+ + S++
Sbjct: 404 VQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNL 463

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
           FVG+AL+D+YAK   + DA   F+ I  +++V  N ++ GY + +       L R M  L
Sbjct: 464 FVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLL 523

Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
           G+  D  +L+++L ACA +   E G+QVH   ++        ++  SSLI+MY KCG + 
Sbjct: 524 GILPDEVSLASILSACASVRGLEQGKQVHCLSVK--TGQETKLYSGSSLIDMYAKCGAID 581

Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
            A ++      R        VV   +++  Y +    ++ + L+  ML+ G    E+ F 
Sbjct: 582 SAHKILACMPER-------SVVSMNALIAGYAQIN-LEQAVNLFRDMLVEGINSTEITFA 633

Query: 302 TVISACSHTGQVKLG 316
           +++ AC    ++ LG
Sbjct: 634 SLLDACHEQQKLNLG 648



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 154/311 (49%), Gaps = 16/311 (5%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K + A   K G+ S   +G+ ++DLYAK   +  AE  F ++  K+ +  N++LS + + 
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQ 138

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 ++   L+   G+  + FT + +L +CA L   + GRQVH  +++      +  +
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVK--MGFESISY 196

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
            + +LI MY KC  +T A  +F       +G +  D V WTSM+G Y + G  +E +K++
Sbjct: 197 CEGALIGMYAKCNFLTDARSIF-------DGAVELDKVSWTSMIGGYIKVGLPEEAVKVF 249

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + M   G +PD+VAFVTVI+A    G++    + F  M +   +      ++ ++    +
Sbjct: 250 QEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVA-----WNLMISGHAK 304

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH-NVG 404
            G   +A +    M   G  S+  S  G++LSA       + G L   +AL+   H NV 
Sbjct: 305 GGYGVEAIEFFQNMRKAGIKSTR-STLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVY 363

Query: 405 IYVMLSNLYAK 415
           +   L ++YAK
Sbjct: 364 VGSSLVSMYAK 374



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 140/339 (41%), Gaps = 58/339 (17%)

Query: 42  CLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKD 101
             K L  ++ L +N ++S   + G P   +K F  +   G++ + +     L++   ++ 
Sbjct: 116 AFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEM 175

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
            + G+QV  +V K G+ S  +   ALI +YAK   + DA  +FD     + V   +++ G
Sbjct: 176 VKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGG 235

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           Y +  L    +++ + M  +G + D      ++ A                         
Sbjct: 236 YIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINA------------------------- 270

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
                       Y   G +  A  +F+    R+    N++VV W  M+  + + GY  E 
Sbjct: 271 ------------YVDLGRLDNASDLFS----RMP---NRNVVAWNLMISGHAKGGYGVEA 311

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----S 337
           I+ ++ M   G K       +V+SA +    +  G+     +VH   L+ G        S
Sbjct: 312 IEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGL-----LVHAEALKQGLHSNVYVGS 366

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            LV +  + G+++ A K+ + + ++     +V +W A+L
Sbjct: 367 SLVSMYAKCGKMEAAKKVFDTLNEQ-----NVVLWNAML 400


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/433 (32%), Positives = 220/433 (50%), Gaps = 45/433 (10%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ RN + +N +I  F + G+ L  L+ F  M  HG+  D + +   L     + + + G
Sbjct: 124 MSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLG 183

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD-------------------- 145
           K V A + KS   S++ + +AL+D+Y K   +  A  +FD                    
Sbjct: 184 KSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKV 243

Query: 146 -----------EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
                      +IP ++ V  N+L+SGY +   +     L   M A  +  D  T+  L+
Sbjct: 244 GELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLI 303

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            A A + A + GR +H   ++    +  + F  S+LI+MY KCG + +A  +FN      
Sbjct: 304 SAVAEMGALDQGRWIHGLAVKMLTKI--EAFSGSALIDMYCKCGSIERAFVIFNQIPE-- 359

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                KDV  WT+M+  +  +G+  + ++L+  M    TKP++V FV+V++ACSH+G V 
Sbjct: 360 -----KDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVD 413

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
            G++ F  M   Y +EPG EHY CLVDLLCR+G L  A  +I +M        S S+WGA
Sbjct: 414 EGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKM----PMEPSRSIWGA 469

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           +LSAC      EL + A  + L+L+P   G Y++LSN+YA    W     +RE+M  +G+
Sbjct: 470 VLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGV 529

Query: 435 KKDVGCSWIEVTG 447
           KK  GCS + V G
Sbjct: 530 KKIAGCSSVAVDG 542



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 189/424 (44%), Gaps = 55/424 (12%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF---M 77
           SRL+  ++   H +NL      +   N   P P N+ I +    G P    K F+    M
Sbjct: 2   SRLLF-FSAVSHPENLEL---AILLFNHFTPYP-NLYIFNTMILGFPFSNEKAFTIYRSM 56

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLL 136
             +G + D       L  +  V +    KQ+  H    G LS   ++ ++LI  Y     
Sbjct: 57  LQNGTYPDRQTFLYLLQTTKFVAEV---KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGC 113

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
              A  +FDE+  +N V  N ++ G+ +     G LEL   M + GL+ D FT+  LL  
Sbjct: 114 FECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLL 173

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------- 248
           C  L   + G+ VHA  I K     N + + ++L++MY KC  +  A +VF+        
Sbjct: 174 CGQLGETKLGKSVHA-QIEKSIGSSN-LILYNALLDMYVKCNELKLARKVFDGPMEKDTV 231

Query: 249 -----LAGHRLEGEI-----------NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
                +AG+   GE+            +D+V W S++  Y +NG +  V  L+  M    
Sbjct: 232 SWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAEN 291

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD--YKLEPGPEHY--SCLVDLLCRAGE 348
            KPD+V  V +ISA +  G +  G     W +H    K+    E +  S L+D+ C+ G 
Sbjct: 292 VKPDKVTIVNLISAVAEMGALDQG----RW-IHGLAVKMLTKIEAFSGSALIDMYCKCGS 346

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIY 406
           +++A+ + N++ ++      V+ W  +++  A H  G   L   +  +A E  P++V   
Sbjct: 347 IERAFVIFNQIPEK-----DVTTWTTMITGFAFHGFGNKALELFSVMQA-ETKPNDVTFV 400

Query: 407 VMLS 410
            +L+
Sbjct: 401 SVLA 404


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 218/399 (54%), Gaps = 14/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +  +I+ F ++G PL A+  +  M       D   +   + A TS+ D++FG  V
Sbjct: 148 RDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSV 207

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             H+ +        + ++LID+YAK   +  A  +F+ IP K+ +   AL+SG+ +    
Sbjct: 208 HGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFA 267

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L  +  M   G   D  +L + L ACA +   + G+ +H +++++   L  D    +
Sbjct: 268 NKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKR---LYLDKVSGT 324

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG +T A  +F+    R       D++LW +M+  YG +G   E + L+  M
Sbjct: 325 ALIDMYAKCGALTFARALFDQIEPR-------DLILWNAMISSYGIHGDGIEALSLFLKM 377

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                 PD   F +++SACSH+G V+ G  +F  ++   K++P  +HY+C+VDLL RAG+
Sbjct: 378 KETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQ 437

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           +++A++LI  M    H    +++W ALLS C +     +G++ A+K LE +P ++GIYV+
Sbjct: 438 VEEAYQLIESM----HIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNPDDLGIYVL 493

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +SN ++    WD+    R++MK  G++K  G S +EV G
Sbjct: 494 VSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNG 532



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 180/378 (47%), Gaps = 18/378 (4%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           N+    N  + +  R+   +N +I  + R   P   L  +  M   GI  D+     +L 
Sbjct: 33  NIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLK 92

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A +S+ D   G+ +       G+   VFV S++++LYAK   +  A+++FD++  ++ V 
Sbjct: 93  ACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVS 152

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
              +++G+ ++      +++ R M     + D   +  L++AC  L  ++FG  VH +M+
Sbjct: 153 WTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMV 212

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           R+  N+ N   +Q+SLI+MY K G +  A +VF       EG   K V+ W +++  + +
Sbjct: 213 RREMNMDN--VLQTSLIDMYAKNGKLELASRVF-------EGIPYKSVISWGALISGFAQ 263

Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
           NG+  + +     M  +G KPD V+ ++ +SAC+  G +K+G      +V    L+    
Sbjct: 264 NGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLDKVSG 323

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCGKFELGKLAA 392
             + L+D+  + G L  A  L +++  R      + +W A++S+   H  G   L     
Sbjct: 324 --TALIDMYAKCGALTFARALFDQIEPR-----DLILWNAMISSYGIHGDGIEALSLFLK 376

Query: 393 QKALELDPHNVGIYVMLS 410
            K   + P +     +LS
Sbjct: 377 MKETNITPDHATFASLLS 394


>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
 gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
 gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
 gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 231/433 (53%), Gaps = 26/433 (6%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKF--LNPRNPLPFNVVISDFCRNGSPLYALKTF 74
           I  Q+ L+  Y  C   +N      C  F  +  R+ + +  +I+ F R G    AL TF
Sbjct: 141 IYVQNSLVHFYGVCGESRN-----ACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDTF 195

Query: 75  SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
           S M V    L TY     L +S  V     GK +   + K   L S+  G+ALID+Y K 
Sbjct: 196 SKMDVEP-NLATYVCV--LVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVKC 252

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSAL 193
             + DA  +F E+  K+ V  N+++SG    +     ++L  LM  + G+  D   L+++
Sbjct: 253 EQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSV 312

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA L A + GR VH Y++     +  D  + +++++MY KCG +  AL++FN     
Sbjct: 313 LSACASLGAVDHGRWVHEYIL--TAGIKWDTHIGTAIVDMYAKCGYIETALEIFN----- 365

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
             G  +K+V  W ++LG    +G+  E ++ +E M+  G KP+ V F+  ++AC HTG V
Sbjct: 366 --GIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLV 423

Query: 314 KLGIEYFEWM-VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
             G  YF  M   +Y L P  EHY C++DLLCRAG LD+A +L+  M  +      V + 
Sbjct: 424 DEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVK----PDVRIC 479

Query: 373 GALLSACHDCGKF-ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           GA+LSAC + G   EL K      L+++  + G+YV+LSN++A    WD++ ++R LMK 
Sbjct: 480 GAILSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKV 539

Query: 432 KGLKKDVGCSWIE 444
           KG+ K  G S+IE
Sbjct: 540 KGISKVPGSSYIE 552



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 35/336 (10%)

Query: 50  NPLPFNVVISDFCRNGSP---LYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           +   +N ++S +     P   ++A KTF     +G   D +       A       R GK
Sbjct: 70  SSFSYNTLLSSYAVCDKPRVTIFAYKTFV---SNGFSPDMFTFPPVFKACGKFSGIREGK 126

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+   VTK G+   ++V ++L+  Y       +A  +F E+PV++ V    +++G+    
Sbjct: 127 QIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTG 186

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L+   L+    M    ++ +  T   +L +   +     G+ +H  ++++   +  +   
Sbjct: 187 LYKEALDTFSKMD---VEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLET-- 241

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLY 285
            ++LI+MY KC  ++ A++VF        GE+  KD V W SM+         KE I L+
Sbjct: 242 GNALIDMYVKCEQLSDAMRVF--------GELEKKDKVSWNSMISGLVHCERSKEAIDLF 293

Query: 286 EAMLM-NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE---HY-SCLV 340
             M   +G KPD     +V+SAC+  G V  G     W VH+Y L  G +   H  + +V
Sbjct: 294 SLMQTSSGIKPDGHILTSVLSACASLGAVDHG----RW-VHEYILTAGIKWDTHIGTAIV 348

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           D+  + G ++ A ++ N     G  S +V  W ALL
Sbjct: 349 DMYAKCGYIETALEIFN-----GIRSKNVFTWNALL 379


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/402 (31%), Positives = 208/402 (51%), Gaps = 13/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ +N + +  ++  + +      AL+ F+ M + G+ LD +     L     ++D   G
Sbjct: 249 MDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMG 308

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ +H+ K G  S V VG+ L+D Y K   I  A   F  I   N V  +AL+SG+ ++
Sbjct: 309 KQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQS 368

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 +++   + + G+  + F  +++ +ACA  +    G Q H   I++   L + ++
Sbjct: 369 GRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKR--GLVSYLY 426

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
            +S+++ MY KCG +  A + F       E     D V WT+++  Y  +G   E +  +
Sbjct: 427 GESAMVTMYSKCGRLDYARRAF-------ESIDEPDAVAWTAIISGYAYHGNAAEALGFF 479

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M   G +P+ V F+ V++ACSH+G V    +Y   M  DY ++P  +HY C++D   R
Sbjct: 480 RRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSR 539

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L +A +LIN M       S    W +LL  C      +LGK+AA+    LDP +   
Sbjct: 540 AGLLXEALELINRMPFEPDAMS----WKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAG 595

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           Y++L NLY+ F  W+E G +R+LM E+ LKK+V CSWI V G
Sbjct: 596 YILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKG 637



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 178/369 (48%), Gaps = 27/369 (7%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + + +VIS + +NG    A++ FS M   GI  ++    S L +         GKQ+
Sbjct: 151 KNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQM 210

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +HV ++   +++ V +A+ ++Y +   +  A+L+FD +  +N+V    L+ GY +AK  
Sbjct: 211 HSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKL 270

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL   M   G++ D F  S +L+ C  L   + G+Q+H+++++      ++V + +
Sbjct: 271 EVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVK--LGXESEVSVGT 328

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEA 287
            L++ Y KCG +  A + F        G I++ + V W++++  + ++G  ++ IK++ +
Sbjct: 329 PLVDFYVKCGDIESAYRSF--------GRISEPNDVSWSALISGFSQSGRLEDCIKIFTS 380

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLL 343
           +   G   +   + +V  AC+    + +G +      H   ++ G   Y    S +V + 
Sbjct: 381 LRSEGVVLNSFIYTSVFQACAAQANLNMGSQ-----AHGDAIKRGLVSYLYGESAMVTMY 435

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPH 401
            + G LD A +   E +D     +    W A++S  A H      LG     ++  + P+
Sbjct: 436 SKCGRLDYARRAF-ESIDEPDAVA----WTAIISGYAYHGNAAEALGFFRRMQSYGVRPN 490

Query: 402 NVGIYVMLS 410
            V    +L+
Sbjct: 491 AVTFIAVLT 499



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 23/252 (9%)

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           D + +FDE+ +KN V    ++S Y +       + L   M A G+  +     +LL++C 
Sbjct: 140 DVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCL 199

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
           G S  E G+Q+H+++IR    L  ++ +++++  MY +CG +  A  VF+       G  
Sbjct: 200 GPSFLELGKQMHSHVIR--AQLNANITVETAICNMYVRCGWLEGAKLVFD-------GMD 250

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            ++ V WT ++  Y +    +  ++L+  M M G + DE  F  V+  C       +G +
Sbjct: 251 AQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQ 310

Query: 319 YFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
                +H + ++ G E      + LVD   + G+++ A++    + +    S     W A
Sbjct: 311 -----IHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVS-----WSA 360

Query: 375 LLSACHDCGKFE 386
           L+S     G+ E
Sbjct: 361 LISGFSQSGRLE 372


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 214/397 (53%), Gaps = 21/397 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS + +NG    A K F  M        T A+    T    +++A      
Sbjct: 200 RNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWT-AMLMGYTQGGRIEEA------ 252

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            + +  +  + +V   +A+I  + +   +  A  +FD+I  K+    +A++  Y      
Sbjct: 253 -SELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFE 311

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L  LM   G+  +  +L ++L  CA L++ + GRQVHA +++      +DVF+ S
Sbjct: 312 VEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVK--SQFDSDVFVAS 369

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            LI MY KCG + KA Q+F+           KD+V+W S++  Y ++G  +E ++++  M
Sbjct: 370 VLITMYVKCGDLVKARQIFDRFSP-------KDIVMWNSIITGYAQHGLVEEALQVFHEM 422

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             +G   D V FV V+SACS+TG+VK G+E FE M   Y +EP  EHY+C+VDLL RAG 
Sbjct: 423 CSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGL 482

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           ++ A  LI +M       +   +WGALL AC       L ++AA+K L+L+P N G Y++
Sbjct: 483 VNDAMDLIQKM----PVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYIL 538

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           LSN+YA    W ++ +LR  M+ K + K  GCSWIEV
Sbjct: 539 LSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEV 575



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 150/365 (41%), Gaps = 54/365 (14%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR--FGK 106
           RN + +N +IS + +N     A K F  M    +   T A+         V +A   F +
Sbjct: 76  RNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWT-AMVRGYVQEGLVSEAETLFWQ 134

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
             + +V    W  +V +G  +     ++  I +A  +FD +PVK+ V    ++SGYC+  
Sbjct: 135 MPEKNVV--SW--TVMLGGLI-----QVRRIDEARGLFDIMPVKDVVARTNMISGYCQEG 185

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM------------- 213
             A   EL   MP   +     + + ++         +  R++   M             
Sbjct: 186 RLAEARELFDEMPRRNV----ISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLM 241

Query: 214 -------IRKCCNLGNDVFMQS-----SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
                  I +   L + + +++     ++I  +G+ G V KA QVF+    + +G     
Sbjct: 242 GYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDG----- 296

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
              W++M+ VY R G+  E + L+  M   G + +  + ++V+S C+    +  G +   
Sbjct: 297 --TWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHA 354

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            +V   + +      S L+ +  + G+L KA     ++ DR      + MW ++++    
Sbjct: 355 ELVKS-QFDSDVFVASVLITMYVKCGDLVKA----RQIFDR-FSPKDIVMWNSIITGYAQ 408

Query: 382 CGKFE 386
            G  E
Sbjct: 409 HGLVE 413


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/402 (31%), Positives = 208/402 (51%), Gaps = 13/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ +N + +  ++  + +      AL+ F+ M + G+ LD +     L     ++D   G
Sbjct: 249 MDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMG 308

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+ +H+ K G  S V VG+ L+D Y K   I  A   F  I   N V  +AL+SG+ ++
Sbjct: 309 RQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQS 368

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 +++   + + G+  + F  +++ +ACA  +    G Q H   I++   L + ++
Sbjct: 369 GRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKR--GLVSYLY 426

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
            +S+++ MY KCG +  A + F       E     D V WT+++  Y  +G   E +  +
Sbjct: 427 GESAMVTMYSKCGRLDYARRAF-------ESIDEPDAVAWTAIISGYAYHGNAAEALGFF 479

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M   G +P+ V F+ V++ACSH+G V    +Y   M  DY ++P  +HY C++D   R
Sbjct: 480 RRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSR 539

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AG L +A +LIN M       S    W +LL  C      +LGK+AA+    LDP +   
Sbjct: 540 AGLLQEALELINRMPFEPDAMS----WKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAG 595

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           Y++L NLY+ F  W+E G +R+LM E+ LKK+V CSWI V G
Sbjct: 596 YILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKG 637



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 181/371 (48%), Gaps = 31/371 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + + +VIS + +NG    A++ FS M   GI  ++    S L +         GKQ+
Sbjct: 151 KNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQI 210

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            +HV ++   +++ V +A+ ++Y +   +  A+L+FD +  +N+V    L+ GY +AK  
Sbjct: 211 HSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKL 270

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFM 226
              LEL   M   G++ D F  S +L+ C GL   + GRQ+H+++++    LG  ++V +
Sbjct: 271 EVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVK----LGAESEVSV 326

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLY 285
            + L++ Y KCG +  A + F        G I++ + V W++++  + ++G  ++ IK++
Sbjct: 327 GTPLVDFYVKCGDIESAYRSF--------GRISEPNDVSWSALISGFSQSGRLEDCIKIF 378

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
            ++   G   +   + +V  AC+    + +G +      H   ++ G   Y    S +V 
Sbjct: 379 TSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQ-----AHGDAIKRGLVSYLYGESAMVT 433

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELD 399
           +  + G LD A +   E +D     +    W A++S  A H      LG     ++  + 
Sbjct: 434 MYSKCGRLDYARRAF-ESIDEPDAVA----WTAIISGYAYHGNAAEALGFFRRMQSYGVR 488

Query: 400 PHNVGIYVMLS 410
           P+ V    +L+
Sbjct: 489 PNAVTFIAVLT 499



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 23/252 (9%)

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           D + +FDE+ +KN V    ++S Y +       + L   M A G+  +     +LL++C 
Sbjct: 140 DVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCL 199

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
           G S  E G+Q+H+++IR    L  ++ +++++  MY +CG +  A  VF+       G  
Sbjct: 200 GPSFLELGKQIHSHVIR--AQLNANITVETAICNMYVRCGWLEGAKLVFD-------GMD 250

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            ++ V WT ++  Y +    +  ++L+  M M G + DE  F  V+  C       +G +
Sbjct: 251 AQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQ 310

Query: 319 YFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
                +H + ++ G E      + LVD   + G+++ A++    + +    S     W A
Sbjct: 311 -----IHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVS-----WSA 360

Query: 375 LLSACHDCGKFE 386
           L+S     G+ E
Sbjct: 361 LISGFSQSGRLE 372


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 222/436 (50%), Gaps = 46/436 (10%)

Query: 45  FLNPRNP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
           F   +NP    +N  I  F  +  P  +   +     +G+  D       + A T     
Sbjct: 70  FYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSL 129

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL-------------------- 142
             G Q    + + G+ S V+V ++L+ +Y+ L  I  A                      
Sbjct: 130 DMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGY 189

Query: 143 -----------MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191
                      +FD++P KN V  + ++SGY +   +   +EL  L+ + G+  +   + 
Sbjct: 190 IKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMV 249

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           +++ +CA L A E G + H Y++R    +  ++ + ++L++MY +CG + KA+ VF+   
Sbjct: 250 SVIASCAHLGALELGERAHDYILRNKMTV--NLILGTALVDMYARCGSIDKAIWVFD--- 304

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
            +L G   +D + WT+++  +  +GY ++ ++ +  M   G  P E+ F  V+SACSH G
Sbjct: 305 -QLPG---RDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGG 360

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            V+ G+E FE M  DY++EP  EHY C+VDLL RAG+L +A K +NEM  +     +  +
Sbjct: 361 LVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMK----PNAPI 416

Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
           WGALL AC      E+ + A +  +EL P + G YV+LSN+YA+   W+ +  +R++MKE
Sbjct: 417 WGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKE 476

Query: 432 KGLKKDVGCSWIEVTG 447
           +G+ K  G +  E+ G
Sbjct: 477 RGVVKPPGYTLFEMDG 492



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 110/237 (46%), Gaps = 10/237 (4%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G +T+  K  +    +N + ++V+IS + +N     A++ +  +   G+  +   + S +
Sbjct: 193 GDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVI 252

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            +   +     G++   ++ ++    ++ +G+AL+D+YA+   I  A  +FD++P ++++
Sbjct: 253 ASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDAL 312

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
               L++G+         LE    M   GL     T +A+L AC+     E G ++   M
Sbjct: 313 SWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESM 372

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
            R    +   +     ++++ G+ G + +A +  N      E  +  +  +W ++LG
Sbjct: 373 KRD-YRIEPRLEHYGCMVDLLGRAGKLAEAEKFVN------EMPMKPNAPIWGALLG 422


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/328 (38%), Positives = 186/328 (56%), Gaps = 13/328 (3%)

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
             SV   +A+I  Y KL  I  AE +F+++P KN V  NA+++GY E      G++L R 
Sbjct: 128 FKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRT 187

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  +  TLS+ L  C+ LSA + GRQVH  + +    L +D    +SLI MY KC
Sbjct: 188 MVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKS--PLCDDTTAGTSLISMYCKC 245

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G++    ++F     R       DVV W +M+  Y ++G  K+ + L++ M+  G KPD 
Sbjct: 246 GVLEDGWKLFVQVPRR-------DVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDW 298

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           + FV V+ AC+H G   LG++YF  M  DY L   P+HY+C+VDLL RAG+L +A  LI 
Sbjct: 299 ITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIE 358

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
           +M  + H     +++G LL AC      E+ + A+QK L LDP +   YV L+N+YA   
Sbjct: 359 KMPFKPHA----AVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATK 414

Query: 418 MWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            WD + ++R+ MK   + K  G SWIEV
Sbjct: 415 RWDHVARVRKSMKSCKVVKTPGYSWIEV 442



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 111/275 (40%), Gaps = 46/275 (16%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
            +G      + +  +N + +N +I+ +  N      +K F  M   GI  ++  L S+L 
Sbjct: 146 RIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALL 205

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
             + +   + G+QV   V KS        G++LI +Y K  ++ D   +F ++P ++ V 
Sbjct: 206 GCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVT 265

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC--AGLSAAEFGRQVHAY 212
            NA++SGY +       L L   M   G+  D  T  A+L AC  AG +           
Sbjct: 266 WNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFT----------- 314

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
                 +LG   F   S+ + Y   GLV K                      +T M+ + 
Sbjct: 315 ------DLGVKYF--HSMAKDY---GLVAKPDH-------------------YTCMVDLL 344

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
           GR G   E + L E M     KP    F T++ AC
Sbjct: 345 GRAGKLVEAVDLIEKMPF---KPHAAVFGTLLGAC 376



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 117/266 (43%), Gaps = 25/266 (9%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           + ++  Y +   +  A+  F+++P+K++   N +++G+ + +      +L  +MP   + 
Sbjct: 42  NTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVV 101

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
             +  +S  +  C  L +A    +   +           V   +++I  Y K G +  A 
Sbjct: 102 TWNAMISGYVE-CGDLDSALKLFEKAPF---------KSVVAWTAMITGYMKLGRIGLAE 151

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           ++F       E    K++V W +M+  Y  N   ++ +KL+  M+  G +P+     + +
Sbjct: 152 RLF-------EKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSAL 204

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
             CS    ++LG +  + +V    L       + L+ + C+ G L+  WKL  ++  R  
Sbjct: 205 LGCSELSALQLGRQVHQ-LVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRR-- 261

Query: 365 GSSSVSMWGALLS--ACHDCGKFELG 388
               V  W A++S  A H  GK  LG
Sbjct: 262 ---DVVTWNAMISGYAQHGEGKKALG 284


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 236/446 (52%), Gaps = 21/446 (4%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VHA     GL    L+   + ++  Y  C   +    + +C+     RN + +N +I  +
Sbjct: 141 VHAFALRAGLDE--LVNVSTAVLDAYCKCGAVEAARAVFDCMPV---RNSVSWNAMIDGY 195

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
             NG+   A+  F  M   G+ +   ++ ++L A   +      ++V   + + G  S+V
Sbjct: 196 ADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNV 255

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNS-VCANALLSGYCEAKLWAGGLELVRLMPA 180
            V +ALI  YAK      A  +F+E+  K + +  NA++ G+ + +       L   M  
Sbjct: 256 SVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQL 315

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             +  D FTL +++ A A +S     R +H Y IR    L  DV++ ++LI+MY KCG V
Sbjct: 316 ENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRH--QLDQDVYVLTALIDMYSKCGRV 373

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
           + A ++F+ A  R        V+ W +M+  YG +G+ +  ++L+E M   G+ P+E  F
Sbjct: 374 SIARRLFDSARDR-------HVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTF 426

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM- 359
           ++V++ACSH G V  G +YF  M  DY LEPG EHY  +VDLL RAG+LD+AW  I  M 
Sbjct: 427 LSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMP 486

Query: 360 LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMW 419
           ++ G     +S++GA+L AC      EL + +AQ   EL P     +V+L+N+YA   MW
Sbjct: 487 IEPG-----ISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMW 541

Query: 420 DEIGQLRELMKEKGLKKDVGCSWIEV 445
            ++ ++R  M++KGL+K  G S I++
Sbjct: 542 KDVARVRTAMEKKGLQKTPGWSIIQL 567



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 163/369 (44%), Gaps = 22/369 (5%)

Query: 27  YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH--GIFL 84
           Y  CR   +          +  R+ + +N V++ + RNG P  A++    M     G   
Sbjct: 61  YFKCRRPADA---RRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERP 117

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D+  L S L A    +     ++V A   ++G    V V +A++D Y K   +  A  +F
Sbjct: 118 DSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVF 177

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           D +PV+NSV  NA++ GY +       + L   M   G+D    ++ A L+AC  L   +
Sbjct: 178 DCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLD 237

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
             R+VH  ++R    L ++V + ++LI  Y KC     A QVFN  G++      K  + 
Sbjct: 238 EVRRVHELLVR--VGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNK------KTRIS 289

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +M+  + +N   ++  +L+  M +   +PD    V+VI A +      L   +     
Sbjct: 290 WNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISD-PLQARWIHGYS 348

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
             ++L+      + L+D+  + G +  A +L +   DR      V  W A++   H  G 
Sbjct: 349 IRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDR-----HVITWNAMI---HGYGS 400

Query: 385 FELGKLAAQ 393
              G+ A +
Sbjct: 401 HGFGQAAVE 409



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 131/298 (43%), Gaps = 18/298 (6%)

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G  L T+     L A+ +  D   G+ V A +   G  S     +AL ++Y K     DA
Sbjct: 13  GPVLRTFTALLKLCAARA--DLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADA 70

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL--GLDYDHFTLSALLRACA 198
             +FD +P ++ V  NA+++GY    L +  +E V  M     G   D  TL ++L ACA
Sbjct: 71  RRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACA 130

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
              A    R+VHA+ +R    L   V + +++++ Y KCG V  A  VF+    R     
Sbjct: 131 DARALHACREVHAFALR--AGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVR----- 183

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
             + V W +M+  Y  NG   E + L+  M+  G    + + +  + AC   G +     
Sbjct: 184 --NSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRR 241

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             E +V    L       + L+    +    D A ++ NE+   G+  + +S W A++
Sbjct: 242 VHELLVR-VGLSSNVSVTNALITTYAKCKRADLAAQVFNEL---GNKKTRIS-WNAMI 294


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/322 (38%), Positives = 184/322 (57%), Gaps = 15/322 (4%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           + +I  YA+   +  A  MF+E+  +N V  N+L++GY +  L+   L    LM   G  
Sbjct: 392 NTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEK 451

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D  T+   LRA A L+A   G Q+H   I+     GND+F++++++ MY K G V +A 
Sbjct: 452 PDQTTIVCCLRASANLAALNVGVQLHHLTIK--TGFGNDLFVKNAILTMYAKSGRVPEAE 509

Query: 245 QVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
            VF         EI NKDVV W S++  Y  NG  KE ++L+E M + G  PDEV F  +
Sbjct: 510 NVF--------AEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGL 561

Query: 304 ISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG 363
           +SAC+H G V  G+  F+ M   Y ++P  EHY+C+++LL R G L++A +++  M    
Sbjct: 562 LSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGM---- 617

Query: 364 HGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIG 423
              SS  +WGALL AC      EL K +A++ L L+P N   YV+LSN++A+   WD + 
Sbjct: 618 KTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVE 677

Query: 424 QLRELMKEKGLKKDVGCSWIEV 445
           ++R LMKE   +K  GCSWIE+
Sbjct: 678 RVRVLMKENKAEKQPGCSWIEI 699



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G +   L+  N    RN + +N +I+ + +NG    AL  F  M   G   D   +   L
Sbjct: 402 GQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCL 461

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            AS ++     G Q+     K+G+ + +FV +A++ +YAK   + +AE +F EI  K+ V
Sbjct: 462 RASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVV 521

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
             N+L++GY         +EL  +MP  G+  D  T + LL AC
Sbjct: 522 SWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSAC 565



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 119/268 (44%), Gaps = 32/268 (11%)

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S VF  +  I    +   I +A  +F ++  +N V  N+++S Y +    A   EL  LM
Sbjct: 13  SYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLM 72

Query: 179 PALGL-DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           P   L  ++      L       +A  F R     M ++      D++  + +I  Y + 
Sbjct: 73  PQRNLVSWNSMIAGYLHNELVEDAARLFDR-----MFKR------DIYSWTLMITCYTRI 121

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G + KA ++FNL   +      +D V   +++  Y +   F+E  KL++ ML+       
Sbjct: 122 GELEKARELFNLLPDK------QDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNV---- 171

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           V++ +++S  +  G+++LG+++FE M      E     ++ +VD     G+LD AW    
Sbjct: 172 VSWNSILSGYTKNGKMQLGLQFFEAMG-----ERNVVSWNLMVDGYVGVGDLDSAW---- 222

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKF 385
            M  +   + +V  W  +LS     G+ 
Sbjct: 223 -MFFKKIPTPNVVSWVTMLSGFAHYGRM 249



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 152/364 (41%), Gaps = 57/364 (15%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI-----FLDTYALCSSLTASTSVK 100
           +  RN + +N +IS + +NG    A + F  M    +      +  Y     +  +  + 
Sbjct: 41  MTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLF 100

Query: 101 DARFGKQVQAHV------TKSGWL-------------SSVFVGSALIDLYAKLLLIHDAE 141
           D  F + + +        T+ G L                   +ALI  YAK  L  +A+
Sbjct: 101 DRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAK 160

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAGL 200
            +FDE+ VKN V  N++LSGY +     G ++L ++   A+G + +  + + ++    G+
Sbjct: 161 KLFDEMLVKNVVSWNSILSGYTK----NGKMQLGLQFFEAMG-ERNVVSWNLMVDGYVGV 215

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                G    A+M  K     N V    +++  +   G +T+A  +FN           K
Sbjct: 216 -----GDLDSAWMFFKKIPTPN-VVSWVTMLSGFAHYGRMTEARNLFNEMP-------TK 262

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           ++V W +M+G Y R     +  KL+  M     + D V++  +I+     G++    E  
Sbjct: 263 NLVSWNAMIGAYVRENQIDDAYKLFMEM----PEKDSVSWTAMINGYVRVGKLLQAREIL 318

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
             M   YK        + +++   ++G +D+A    NE+  +     SV  W ++++   
Sbjct: 319 NLM--PYK---NIAAQTAMINGYLQSGRMDEA----NEIFSQISVRDSVC-WNSMITGYA 368

Query: 381 DCGK 384
            CG+
Sbjct: 369 HCGR 372


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 226/443 (51%), Gaps = 44/443 (9%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTA 95
           LG        ++ R+ + +N +I  + +       L  F+ M    +  D+  +   + A
Sbjct: 208 LGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILA 267

Query: 96  STSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA 155
            + + +      +  ++        V++G++LID+Y +  L+  A  +FD +  KN V  
Sbjct: 268 CSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSW 327

Query: 156 NALLSGYCEA-------KLW------------------------AGGLELVRLMPALGLD 184
           NA+L+GY  A       KL+                        +  L+L + M    + 
Sbjct: 328 NAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVK 387

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
            D  T+S++L AC+ L   + G+ VH YM R   ++ +DV++ ++LI+MY KCG+V KAL
Sbjct: 388 PDEITVSSVLSACSHLGLLDTGQTVHEYMCRH--DIKSDVYVGNALIDMYCKCGVVDKAL 445

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           +VF    H ++    KD V WTSM+     NG+   V +L+  ML +G +P   +F+ ++
Sbjct: 446 EVF----HDMK---KKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGIL 498

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
            AC+H G V  G+EYFE M H Y L P  +HY C+VDLL R+GELD+A++ I +M     
Sbjct: 499 LACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQM----P 554

Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQ 424
               V +W  LLSAC       L ++A  K LELDP N G YV+LSN YA    WD+  +
Sbjct: 555 VVPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASR 614

Query: 425 LRELMKEKGLKKDVGCSWIEVTG 447
           +R+LM    ++K    S IEV G
Sbjct: 615 MRDLMVVGDVQKPSSWSSIEVIG 637



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 175/371 (47%), Gaps = 47/371 (12%)

Query: 32  HKKNLGTLTNCLK---------------FLNPRNP--LPFNVVISDFCRNGSPLYALKTF 74
           H KN  +++N +K               F+    P  L FN +I    ++ +P  A+  +
Sbjct: 85  HHKNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMY 144

Query: 75  S-FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           S  M+  GI  D         A + VKD   G+     V K G+ S +F+ ++LI +Y  
Sbjct: 145 SDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGY 204

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A+ +FD++  ++ V  N+L+ GY +   +   L+L  LM    +  D  T+  +
Sbjct: 205 FGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKV 264

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN----- 248
           + AC+ L        +  Y+  K  ++  DV++ +SLI+MYG+ GLV  A +VF+     
Sbjct: 265 ILACSYLCEDGVVDSMVKYIEDKHVDI--DVYLGNSLIDMYGRRGLVDLARRVFDRMQEK 322

Query: 249 --------LAGHRLEGEIN-----------KDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
                   L G+   G++            ++V+ WT M+    +     + +KL++ M+
Sbjct: 323 NIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMM 382

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLEPGPEHYSCLVDLLCRAGE 348
               KPDE+   +V+SACSH G +  G    E+M  HD K +    +   L+D+ C+ G 
Sbjct: 383 DANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGN--ALIDMYCKCGV 440

Query: 349 LDKAWKLINEM 359
           +DKA ++ ++M
Sbjct: 441 VDKALEVFHDM 451


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 210/383 (54%), Gaps = 13/383 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++S    NG  + AL   S MH  G+  D Y     L    +  +     QV   V 
Sbjct: 310 WNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVI 369

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            SG+     VGS LID+YAK   I++A  +F+ +P K+ V  ++L++G            
Sbjct: 370 TSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFS 429

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M  LGL  DHF +S +L+AC+ L++ + G+QVH+  ++K     ++  + ++LI+M
Sbjct: 430 LFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKK--GYESEGVVTTALIDM 487

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  AL +F         EI  D + WTS++    +NG  +E I L   M+ +GT
Sbjct: 488 YAKCGDIEDALSLFGCLS-----EI--DTMSWTSIIVGCAQNGRAEEAISLLHKMIESGT 540

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           KP+++  + V++AC H+G V+   + F  +  ++ L P PEHY+C+VD+L +AG  ++A 
Sbjct: 541 KPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAV 600

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           KLI+EM  +       ++W +LL AC      +L  + A+  L   P +V +Y+MLSN+Y
Sbjct: 601 KLISEMPFK----PDKTIWSSLLGACGTYKNRDLANIVAEHLLATSPEDVSVYIMLSNVY 656

Query: 414 AKFCMWDEIGQLRELMKEKGLKK 436
           A   MWD + ++RE +K+ G K+
Sbjct: 657 AALGMWDSVSKVRETVKKIGKKR 679



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 178/389 (45%), Gaps = 36/389 (9%)

Query: 37  GTLTNCLKFLNPRNPLP----FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           G + + +K  + + P P    +N +I+    N S   AL+  S MH  G+ +D +   S 
Sbjct: 185 GLIDDAMKLFD-KMPEPDIVSWNSIIAGLVDNASS-RALRFVSMMHGKGLKMDEFTFPSV 242

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L A     +   G+++  ++ KSG+ SS +  SALID+Y+   L+ +A  +FD+    +S
Sbjct: 243 LKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSS 302

Query: 153 VCA-----NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           V       N++LSG+     +   L ++  M   G+ +D +T S +L+ C          
Sbjct: 303 VSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLAS 362

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
           QVH ++I     L  D  + S LI++Y K G +  AL++F     RL    +KDVV W+S
Sbjct: 363 QVHGFVITSGYEL--DCVVGSILIDIYAKQGSINNALRLF----ERLP---DKDVVAWSS 413

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           ++    R G  K    L+  M+  G + D      V+ ACS     + G +     VH  
Sbjct: 414 LITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQ-----VHSL 468

Query: 328 KLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
            L+ G E      + L+D+  + G+++ A  L   + +    S     W +++  C   G
Sbjct: 469 CLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMS-----WTSIIVGCAQNG 523

Query: 384 KFELGKLAAQKALE--LDPHNVGIYVMLS 410
           + E       K +E    P+ + I  +L+
Sbjct: 524 RAEEAISLLHKMIESGTKPNKITILGVLT 552



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 187/427 (43%), Gaps = 59/427 (13%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLP-YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVIS 59
           ++H+H  ++G    C  IF    M+  Y+ C    ++    N    +  RN + +  ++S
Sbjct: 24  SLHSHIIKSGF---CNHIFILNNMISVYSKC---SSIIDARNMFDEMPHRNIVSWTTMVS 77

Query: 60  DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS-LTASTSVKDARFGKQVQAHVTKSGWL 118
               +  P  AL  ++ M    I      L S+ L A   V++   GK V  H+ ++   
Sbjct: 78  VLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLD 137

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL----------- 167
             + + +AL+D+Y K   + DA+ +F EIP KN+   N L+ GY +  L           
Sbjct: 138 VDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKM 197

Query: 168 -------W------------AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
                  W            +  L  V +M   GL  D FT  ++L+AC        GR+
Sbjct: 198 PEPDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGRE 257

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +H Y+I+      +  +  S+LI+MY  C L+++A ++F+   +     +++ + LW SM
Sbjct: 258 IHCYIIKS--GFESSCYCISALIDMYSSCKLLSEATKIFD--QYFRNSSVSESLALWNSM 313

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           L  +  NG + E + +   M  +G + D   F  V+  C +   + L  +     VH + 
Sbjct: 314 LSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQ-----VHGFV 368

Query: 329 LEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           +  G E      S L+D+  + G ++ A +L   + D+      V  W +L++    C +
Sbjct: 369 ITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDK-----DVVAWSSLITG---CAR 420

Query: 385 FELGKLA 391
           F   KLA
Sbjct: 421 FGSDKLA 427



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 148/309 (47%), Gaps = 40/309 (12%)

Query: 98  SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANA 157
           S+K+A   K + +H+ KSG+ + +F+ + +I +Y+K   I DA  MFDE+P +N V    
Sbjct: 18  SIKNA---KSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTT 74

Query: 158 LLSGYCEAKLWAGGLELVRLMPALGLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           ++S    + +    L L   M    ++  + F  SA+L+AC  +   E G+ VH ++ + 
Sbjct: 75  MVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQ- 133

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEINK--- 260
              L  D+ + ++L++MY KCG +  A +VF              + G+  +G I+    
Sbjct: 134 -AKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMK 192

Query: 261 --------DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
                   D+V W S++     N   +  ++    M   G K DE  F +V+ AC  + +
Sbjct: 193 LFDKMPEPDIVSWNSIIAGLVDNASSR-ALRFVSMMHGKGLKMDEFTFPSVLKACGCSDE 251

Query: 313 VKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
           + LG E     +H Y ++ G E      S L+D+      L +A K+ ++       S S
Sbjct: 252 LMLGRE-----IHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSES 306

Query: 369 VSMWGALLS 377
           +++W ++LS
Sbjct: 307 LALWNSMLS 315



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 126/284 (44%), Gaps = 36/284 (12%)

Query: 37  GTLTNCLKF---LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G++ N L+    L  ++ + ++ +I+   R GS   A   F  M   G+ +D + +   L
Sbjct: 391 GSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVL 450

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A +S+   + GKQV +   K G+ S   V +ALID+YAK   I DA  +F  +   +++
Sbjct: 451 KACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTM 510

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
              +++ G  +       + L+  M   G   +  T+  +L AC            H+ +
Sbjct: 511 SWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTACR-----------HSGL 559

Query: 214 IRKCCNLGNDVFMQSSLI----------EMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           + +  ++ N +     LI          ++ G+ G   +A+++ +      E     D  
Sbjct: 560 VEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLIS------EMPFKPDKT 613

Query: 264 LWTSMLGVYG--RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
           +W+S+LG  G  +N     ++   E +L   T P++V+   ++S
Sbjct: 614 IWSSLLGACGTYKNRDLANIVA--EHLL--ATSPEDVSVYIMLS 653


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/392 (34%), Positives = 207/392 (52%), Gaps = 13/392 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           FN +   + R+ +PL A+  F     + +  D Y   S L A    K  + GKQ+     
Sbjct: 95  FNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHCLAI 154

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K G   + +V   LI++YA    +  A+ +FDEI     V  NA+++GY  +      L 
Sbjct: 155 KLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALS 214

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L R + A  L  +  T+ ++L +CA L A + G+ +H Y+ +    L   V + ++LI+M
Sbjct: 215 LFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKN--GLDKYVKVNTALIDM 272

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A+ VF       E    +D   W++M+  Y  +G  ++V+ ++E M     
Sbjct: 273 YAKCGSLDGAISVF-------ESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKV 325

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +PDE+ F+ ++ ACSHTG V  G  YF  M   Y + PG +HY C+VDLL RAG L +A+
Sbjct: 326 QPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAY 385

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           K I+E+  +     +  +W  LLS+C   G  EL K    + LELD  + G YV+LSNL 
Sbjct: 386 KFIDELPIK----PTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLC 441

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A+   W+++  LR+LM  KG  K  GCS IEV
Sbjct: 442 ARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEV 473



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 40/263 (15%)

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
           Y+    S+LL      ++ +  +Q+ A+ I+   +L ND+ + + LI    +        
Sbjct: 21  YNTTYPSSLLSCLPKCTSLKELKQIQAFSIKT--HLQNDLQILTKLINSCTQ----NPTT 74

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
              + A    E     D+VL+ SM   Y R+    + I L+   L     PD+  F +++
Sbjct: 75  ASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLL 134

Query: 305 SACS-----------HTGQVKLGIEYFEWM-------------------VHDYKLEPGPE 334
            AC            H   +KLG+    ++                   V D  LEP   
Sbjct: 135 KACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVV 194

Query: 335 HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ- 393
            Y+ ++    R+   ++A  L  ++  R    + V++  ++LS+C   G  +LGK   + 
Sbjct: 195 SYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVL-SVLSSCALLGALDLGKWIHEY 253

Query: 394 -KALELDPHNVGIYVMLSNLYAK 415
            K   LD + V +   L ++YAK
Sbjct: 254 VKKNGLDKY-VKVNTALIDMYAK 275


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/421 (31%), Positives = 218/421 (51%), Gaps = 35/421 (8%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +N +I+   +NG     L  F  M    I  D +   S L A T      +G
Sbjct: 401 MRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYG 459

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA---------- 155
            ++ + + KSG  S+  VG +LID+Y+K  +I +AE +      + +V            
Sbjct: 460 MEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHN 519

Query: 156 ----------NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
                     N+++SGY   +       L   M  +G+  D FT + +L  CA L++A  
Sbjct: 520 KRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGL 579

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G+Q+HA +I+K   L +DV++ S+L++MY KCG +  +  +F       E  + +D V W
Sbjct: 580 GKQIHAQVIKK--ELQSDVYISSTLVDMYSKCGDLHDSRLMF-------EKSLRRDFVTW 630

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            +M+  Y  +G  +E I+L+E M++   KP+ V F++++ AC+H G +  G+EYF  M  
Sbjct: 631 NAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKR 690

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH-DCGK 384
           DY L+P   HYS +VD+L ++G++ +A +LI EM       +   +W  LL  C      
Sbjct: 691 DYGLDPQLPHYSNMVDILGKSGKVKRALELIREM----PFEADDVIWRTLLGVCTIHRNN 746

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            E+ + A    L LDP +   Y +LSN+YA   MW+++  LR  M+   LKK+ GCSW+E
Sbjct: 747 VEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVE 806

Query: 445 V 445
           +
Sbjct: 807 L 807



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 163/325 (50%), Gaps = 19/325 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + ++ +I+   +N     ALK F  M      +      S L +  ++ + R G Q+
Sbjct: 202 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQL 261

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            AH  KS + +   V +A +D+YAK   + DA+++FD+    N    NA+++GY + +  
Sbjct: 262 HAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHG 321

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   + + GL +D  +LS + RACA +     G Q++   I+   +L  DV + +
Sbjct: 322 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSL--DVCVAN 379

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           + I+MYGKC  + +A +VF+    R       D V W +++  + +NG   E + L+ +M
Sbjct: 380 AAIDMYGKCQALAEAFRVFDEMRRR-------DAVSWNAIIAAHEQNGKGYETLFLFVSM 432

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLLC 344
           L +  +PDE  F +V+ AC+  G +  G+E     +H   ++ G    S     L+D+  
Sbjct: 433 LRSRIEPDEFTFGSVLKACT-GGSLGYGME-----IHSSIVKSGMASNSSVGCSLIDMYS 486

Query: 345 RAGELDKAWKLINEMLDRGHGSSSV 369
           + G +++A K+ +    R + S ++
Sbjct: 487 KCGMIEEAEKIHSRFFQRTNVSGTM 511



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 163/340 (47%), Gaps = 23/340 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++S + +NG  L +++ F  M   G   D       L   + ++D   G Q+
Sbjct: 101 RDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQI 160

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V + G  + V   SAL+D+YAK     ++  +F  IP KNSV  +A+++G  +  L 
Sbjct: 161 HGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLL 220

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
           +  L+  + M  +         +++LR+CA LS    G Q+HA+ ++   +   D  +++
Sbjct: 221 SLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKS--DFAADGIVRT 278

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           + ++MY KC  +  A  +F+ + +     +N+    + +M+  Y +  +  + + L+  +
Sbjct: 279 ATLDMYAKCDNMQDAQILFDKSEN-----LNRQS--YNAMITGYSQEEHGFKALLLFHRL 331

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL----VDLLC 344
           + +G   DE++   V  AC+    +  G++     ++D  ++       C+    +D+  
Sbjct: 332 MSSGLGFDEISLSGVFRACALVKGLSEGLQ-----IYDLAIKSSLSLDVCVANAAIDMYG 386

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           +   L +A+++ +EM  R   S     W A+++A    GK
Sbjct: 387 KCQALAEAFRVFDEMRRRDAVS-----WNAIIAAHEQNGK 421



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 107/244 (43%), Gaps = 40/244 (16%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP--------------- 148
            GKQ  AH+  SG+  + FV + L+ +Y        A ++FD +P               
Sbjct: 24  LGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNKMINGYA 83

Query: 149 ----------------VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
                           V++ V  N++LSGY +       +E+   M   G ++D  T + 
Sbjct: 84  KSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAI 143

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           +L+ C+ L     G Q+H  ++R  C+   DV   S+L++MY K     ++L+VF     
Sbjct: 144 ILKVCSCLEDTSLGMQIHGVVVRVGCD--TDVVAASALLDMYAKGKRFVESLRVF----- 196

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
             +G   K+ V W++++    +N      +K ++ M        +  + +V+ +C+   +
Sbjct: 197 --QGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSE 254

Query: 313 VKLG 316
           ++LG
Sbjct: 255 LRLG 258



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 50/216 (23%)

Query: 197 CAGLSAAEFGRQVHAYMI----RKCCNLGN-------------------------DVFMQ 227
           CA   A E G+Q HA+MI    R    + N                         DV   
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           + +I  Y K   + KA   FN+   R       DVV W SML  Y +NG   + I+++  
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVR-------DVVSWNSMLSGYLQNGETLKSIEVFVD 128

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLL 343
           M   GT+ D   F  ++  CS      LG++     +H   +  G +      S L+D+ 
Sbjct: 129 MGRAGTEFDGRTFAIILKVCSCLEDTSLGMQ-----IHGVVVRVGCDTDVVAASALLDMY 183

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
            +     ++ ++   + ++    +SVS W A+++ C
Sbjct: 184 AKGKRFVESLRVFQGIPEK----NSVS-WSAIIAGC 214


>gi|449498539|ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/421 (33%), Positives = 223/421 (52%), Gaps = 18/421 (4%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLD 85
            TC H   LG+    L F +   P  F  N +I  F  +  P   L  ++ M+ + I  +
Sbjct: 52  NTCHHLHLLGSA--FLFFTHIPKPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPN 109

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
            Y     L +    KD   G+ V  HV KSG  S ++V + L+D+YA    +   + +FD
Sbjct: 110 NYTFPFVLKSLADFKDLVGGQSVHTHVVKSGHASDLYVQNTLMDVYASCGKMGLCKKVFD 169

Query: 146 EIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
           E+   + V    L+ GY  + +    L +   M   G+D +  T+   L ACA   A E 
Sbjct: 170 EMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVNALAACASFGAIEM 229

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G  +H ++  K   +  DV + ++LI+MYGKCG + +AL VF       +    K+V  W
Sbjct: 230 GVWIHEFVKTKRWEV--DVVLGTALIDMYGKCGRIKEALAVF-------QAMKEKNVYTW 280

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
              +         +E I  ++ M   G + D+V  V V+SACSH+G V  G + F  ++H
Sbjct: 281 NVFINGLASAKCGEEAIAWFKRMDEEGVEADDVTLVAVLSACSHSGLVNSGRQIFWSLIH 340

Query: 326 -DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
             +   PG +HYSC+VD+L R G +++A  +IN+M       ++ SMWG+LL+     G 
Sbjct: 341 GRFGFSPGIKHYSCMVDILARNGCIEEACVMINDMPFE----ATRSMWGSLLTGSRAHGS 396

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            E+ ++AA+K +E++P N G YV+LSN+YA+   W E+ ++RE+MKE+GLKKD+G S +E
Sbjct: 397 LEVSEIAARKLVEMEPENGGYYVVLSNIYAEMGKWSEVEKVREIMKERGLKKDLGSSSVE 456

Query: 445 V 445
           +
Sbjct: 457 L 457



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 127/280 (45%), Gaps = 17/280 (6%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+QA +      S   +    I+    L L+  A L F  IP  +    N+L+  +  +K
Sbjct: 30  QIQAQLILQNLHSHPLIAHHFINTCHHLHLLGSAFLFFTHIPKPHVFICNSLIRAFSHSK 89

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           +    L L   M    +  +++T   +L++ A       G+ VH ++++      +D+++
Sbjct: 90  IPHTPLFLYTHMNRNSISPNNYTFPFVLKSLADFKDLVGGQSVHTHVVKS--GHASDLYV 147

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
           Q++L+++Y  CG +    +VF+   H        DVV WT ++  Y  +    + + ++E
Sbjct: 148 QNTLMDVYASCGKMGLCKKVFDEMLH-------TDVVSWTILIMGYRVSFMLDDALIVFE 200

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M   G  P+ V  V  ++AC+  G +++G+   E+ V   + E      + L+D+  + 
Sbjct: 201 QMQYAGVDPNRVTIVNALAACASFGAIEMGVWIHEF-VKTKRWEVDVVLGTALIDMYGKC 259

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGK 384
           G + +A  +   M ++     +V  W   ++  A   CG+
Sbjct: 260 GRIKEALAVFQAMKEK-----NVYTWNVFINGLASAKCGE 294


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/397 (33%), Positives = 217/397 (54%), Gaps = 13/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS   +N     +L  F  M    I  +     SSLTA + ++    G+Q+
Sbjct: 52  RNVITWTAIISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQI 111

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K G  S++ + SAL+DLY+K   + DA  +F+     + V    +L G+ +    
Sbjct: 112 HGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFE 171

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +E    M  +G + D   +SA+L AC   ++   G+Q+H+ +I++  +LG++ F+ +
Sbjct: 172 EEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKR--SLGSNPFVGN 229

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
            LI MY KCG + ++++VFN       G   ++ V W SM+  + R+G     ++LYE M
Sbjct: 230 GLINMYSKCGELQESIKVFN-------GLTCRNSVSWNSMIAAFARHGDGFRALRLYEEM 282

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           +  G  P ++ F++++ ACSH G V  G+++ + M   Y + P  EHY+C+VD+L RAG 
Sbjct: 283 IQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGL 342

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A  LI    +R      V +W ALL AC   G  E+GK AA++ L L+P     YV+
Sbjct: 343 LNEAKSLI----ERLSIKPDVLIWQALLGACSIRGDTEIGKYAAEQLLLLEPKKPAPYVL 398

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           L+N+Y+    WDE  +  + MKE G+ K+ G SWIE+
Sbjct: 399 LANIYSSKGRWDERARTIKRMKEMGVAKETGISWIEI 435



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 122/236 (51%), Gaps = 15/236 (6%)

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FDE+  +N +   A++SG  + +++   L L   M    ++ +  T  + L AC+GL A
Sbjct: 45  VFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQA 104

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            E GRQ+H  + +    + +++ ++S+L+++Y KCG +  A +VF       E  +  D 
Sbjct: 105 LEKGRQIHGLVWK--LGIQSNLCIESALMDLYSKCGSLEDARRVF-------ESAVELDE 155

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V  T +L  + +NG+ +E I+ +  M+  GT+ D      V+ AC     + LG +    
Sbjct: 156 VSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSLGLG-KQIHS 214

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +V    L   P   + L+++  + GEL ++ K+ N +  R    +SVS W ++++A
Sbjct: 215 LVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCR----NSVS-WNSMIAA 265


>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 468

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/394 (33%), Positives = 205/394 (52%), Gaps = 18/394 (4%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N +I  F  N +P      ++ MH + I  + +     L +    K    G+ +  HV K
Sbjct: 78  NSLIRAFSHNHTPHTPFSIYTHMHSNSILPNNFTFPFLLKSLADFKGLSEGQCIHTHVVK 137

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
            G    ++V ++L+++YA    +     +FDE+P ++ V    L++GY  A+ +   L  
Sbjct: 138 LGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSAERYDDALIA 197

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
              M   G+  +H T+   L ACA   A E G  +H ++ R       DV + +SLI+MY
Sbjct: 198 FEQMQYAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSGWEF--DVILGTSLIDMY 255

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG--VYGRNGYFKEVIKLYEAMLMNG 292
           GKCG + + L VF            K+V  W S++      R+G   E +  +  M   G
Sbjct: 256 GKCGRIEEGLVVF-------RSMKEKNVFTWNSLIKGLALARSG--AEAVWWFYRMEQEG 306

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYF-EWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
            K DEV  + V+ ACSH+G V++G + F   M   Y+  PG +HY+C++DLL RAG L +
Sbjct: 307 IKADEVTLIAVLCACSHSGMVQMGRQIFGSLMNGKYEFFPGVKHYACVIDLLARAGILQE 366

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
           A     E++ R     +  MWGA L+ C   G  EL + AA+K +EL+P N   YV+LSN
Sbjct: 367 AM----EVMTRMPFEPNKVMWGAFLAGCRAHGDLELSEFAARKLVELEPGNGAYYVLLSN 422

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +YA+   W ++ ++R LMKE GL KD+GCS IE+
Sbjct: 423 IYAEMGRWSDVEKVRRLMKEGGLTKDLGCSSIEL 456


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/392 (34%), Positives = 206/392 (52%), Gaps = 12/392 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +  NG    +++ F  +   G+   +  L + +   +          + AHV 
Sbjct: 290 YNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVV 349

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K+G  ++  V +AL  LY +   +  A   FD +P K     NA++SGY +  L    + 
Sbjct: 350 KAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVA 409

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L + M AL +  +  T+S+ L ACA L A   G+ VH  +  +   L  +V++ ++LI+M
Sbjct: 410 LFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLEL--NVYVMTALIDM 467

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG + +A  +F       +   NK+VV W  M+  YG +G   E +KLY+ M+    
Sbjct: 468 YVKCGSIAEARCIF-------DSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHL 520

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            P    F++V+ ACSH G VK G   F  M  DY + PG EH +C+VDLL RAG+L +A+
Sbjct: 521 HPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAF 580

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           +LI+E      G     +WGALL AC      +L KLA+QK  EL+P N G YV+LSNLY
Sbjct: 581 ELISEFPKSAVGP---GIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLY 637

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
                + E   +R+  K + L K  GC+ IE+
Sbjct: 638 TSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEI 669



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 144/311 (46%), Gaps = 28/311 (9%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + + A    SG+ +  FV SAL  LY  L   +DA  +FD +P  ++V  N LL+G   +
Sbjct: 143 RPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS 202

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +        VR+  A  +  D  TL+++L A A ++    GR VHA+  +  C L     
Sbjct: 203 EALEA---FVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEK--CGLAQHEH 257

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + + LI +Y KCG +  A  +F+    R+EG    D+V + +++  Y  NG     ++L+
Sbjct: 258 VVTGLISLYAKCGDMECARHLFD----RMEG---PDLVTYNALISGYSINGMVGSSVELF 310

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVD 341
           + ++  G +P     V +I   S       G E     +H + ++ G +      + L  
Sbjct: 311 KELVGMGLRPSSSTLVALIPVHS-----PFGHEPLAGCLHAHVVKAGLDANAPVSTALTT 365

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ--KALELD 399
           L CR  ++D A +  + M ++     ++  W A++S     G  E+     Q  +AL + 
Sbjct: 366 LYCRFNDMDSARRAFDAMPEK-----TMESWNAMISGYAQNGLTEMAVALFQQMQALNVR 420

Query: 400 PHNVGIYVMLS 410
           P+ + I   LS
Sbjct: 421 PNPLTISSALS 431



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 146/328 (44%), Gaps = 16/328 (4%)

Query: 51  PLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYALCSSLTASTSVKDARFGKQVQ 109
           P P  V+ +      S   AL+ F  M   G +  D+  L S L A+  V +   G+ V 
Sbjct: 185 PSPDTVLWNTLLAGLSGSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVH 244

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           A   K G      V + LI LYAK   +  A  +FD +   + V  NAL+SGY    +  
Sbjct: 245 AFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVG 304

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             +EL + +  +GL     TL AL+   +          +HA++++    L  +  + ++
Sbjct: 305 SSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVK--AGLDANAPVSTA 362

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           L  +Y +   +  A + F       +    K +  W +M+  Y +NG  +  + L++ M 
Sbjct: 363 LTTLYCRFNDMDSARRAF-------DAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQ 415

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
               +P+ +   + +SAC+  G + LG ++   ++ + KLE      + L+D+  + G +
Sbjct: 416 ALNVRPNPLTISSALSACAQLGALSLG-KWVHKIIANEKLELNVYVMTALIDMYVKCGSI 474

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLS 377
            +A  + + M ++     +V  W  ++S
Sbjct: 475 AEARCIFDSMDNK-----NVVSWNVMIS 497


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/401 (35%), Positives = 223/401 (55%), Gaps = 18/401 (4%)

Query: 49  RNPLPFNVVISDFCRNG---SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ + +  +I+ + ++G   S   AL  F  M   G+  + +AL S +     +     G
Sbjct: 155 KDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDG 214

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+     K G+  +VFVGS+L+D+YA+   + ++ L+FDE+  KN V  NAL+SG+   
Sbjct: 215 KQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARK 274

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L L   M   G     FT SALL + +   + E G+ +HA+M++    L    +
Sbjct: 275 GEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVG--Y 332

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L+ MY K G +  A +VF+    RL   +  DVV   SML  Y ++G  KE ++L+
Sbjct: 333 VGNTLLHMYAKSGNICDAKKVFD----RL---VKVDVVSCNSMLIGYAQHGLGKEAVELF 385

Query: 286 EAMLM-NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           E M++    +P+++ F++V++ACSH G +  G+ YFE M   Y LEP   HY+ +VDL  
Sbjct: 386 EEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELM-KKYGLEPKLSHYTTVVDLFG 444

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG LD+A   I EM        + ++WGALL A       E+G  AAQK LELDP   G
Sbjct: 445 RAGLLDQAKSFIEEMPIE----PNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPG 500

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            + +LSN+YA    W ++ ++R+ MK+ GLKK+  CSW+E+
Sbjct: 501 AHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEI 541



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 169/343 (49%), Gaps = 34/343 (9%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GK V  H+  S + + + + ++++ +YAK   +  A  +FDE+ VK+ V   ++++GY +
Sbjct: 110 GKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQ 169

Query: 165 ---AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC--- 218
              A      L L   M   GL  + F LS+L++ C  L +   G+Q+H      CC   
Sbjct: 170 DGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHG-----CCWKY 224

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
               +VF+ SSL++MY +CG + ++  VF+     LE   +K+ V W +++  + R G  
Sbjct: 225 GFQENVFVGSSLVDMYARCGELRESRLVFD----ELE---SKNEVSWNALISGFARKGEG 277

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-- 336
           +E + L+  M   G    E  +  ++ + S TG ++ G    +W+ H + ++ G +    
Sbjct: 278 EEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQG----KWL-HAHMMKSGKKLVGY 332

Query: 337 --SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQK 394
             + L+ +  ++G +  A K+ + ++     S +  + G    A H  GK E  +L  + 
Sbjct: 333 VGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGY---AQHGLGK-EAVELFEEM 388

Query: 395 AL--ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
            L  E++P+++    +L+   +   + DE     ELMK+ GL+
Sbjct: 389 MLWVEIEPNDITFLSVLTAC-SHAGLLDEGLYYFELMKKYGLE 430



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 108/226 (47%), Gaps = 9/226 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  +N + +N +IS F R G    AL  F  M   G     +   + L +S++      G
Sbjct: 256 LESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQG 315

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K + AH+ KSG     +VG+ L+ +YAK   I DA+ +FD +   + V  N++L GY + 
Sbjct: 316 KWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQH 375

Query: 166 KLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
            L    +EL   +M  + ++ +  T  ++L AC+   A      ++ + + K   L   +
Sbjct: 376 GLGKEAVELFEEMMLWVEIEPNDITFLSVLTACS--HAGLLDEGLYYFELMKKYGLEPKL 433

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
              +++++++G+ GL+ +A           E  I  +  +W ++LG
Sbjct: 434 SHYTTVVDLFGRAGLLDQAKSFIE------EMPIEPNATIWGALLG 473


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/399 (34%), Positives = 214/399 (53%), Gaps = 14/399 (3%)

Query: 48  PRNPLP-FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PR  L  +N +IS     G    +L  F  M   G  ++   L + L ++ S++      
Sbjct: 367 PRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTT 426

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           QV A   K G+LS   V + LID Y K   +  A  +F+E    N +   ++++   +  
Sbjct: 427 QVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCD 486

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                ++L   M   GL+ D F LS+LL ACA LSA E G+QVHA++I++      DVF 
Sbjct: 487 HGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR--KFMTDVFA 544

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L+  Y KCG +  A   F+       G  +K VV W++M+G   ++G+ K  + ++ 
Sbjct: 545 GNALVYTYAKCGSIEDADLAFS-------GLPDKGVVSWSAMIGGLAQHGHGKRALDVFR 597

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
            M+     P+ +   +V+ AC+H G V     YF  M   + ++   EHYSC++DLL RA
Sbjct: 598 RMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRA 657

Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIY 406
           G+LD A +L+N M       ++ ++WGALL+A       ELGKLAA+K   L+P   G +
Sbjct: 658 GKLDDAMELVNSM----PFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTH 713

Query: 407 VMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           V+L+N YA   MWDE+ ++R+LMK+  +KK+   SW+E+
Sbjct: 714 VLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVEL 752



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 175/373 (46%), Gaps = 42/373 (11%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +N ++S F +N     A++ F  M   G+  + +     + A T  +D   G++V
Sbjct: 165 RNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKV 224

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V ++G+   VF  +AL+D+Y+KL  IH A L+F ++P  + V  NA +SG       
Sbjct: 225 HAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHD 284

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLR--ACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
              LEL+  M + GL  + FTLS++L+  A AG  A   GRQ+H +MI+ C +  +D ++
Sbjct: 285 QHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACAD--SDDYI 342

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
             +L++MY K GL+  A +VF       E    KD++LW +++      G   E + L+ 
Sbjct: 343 GVALVDMYAKYGLLDDARKVF-------EWIPRKDLLLWNALISGCSHGGCHGESLSLFC 395

Query: 287 AMLMNGTKPDEVAFVTV------ISACSHTGQV-----KLGI------------EYFEWM 323
            M   G+  +      V      + A S T QV     K+G              Y++  
Sbjct: 396 RMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCN 455

Query: 324 VHDYKLEPGPEH-------YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
              Y  +   EH       ++ ++  L +    + A KL  EML +G       +  +LL
Sbjct: 456 CLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVL-SSLL 514

Query: 377 SACHDCGKFELGK 389
           +AC     +E GK
Sbjct: 515 NACASLSAYEQGK 527



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 141/303 (46%), Gaps = 31/303 (10%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           LT   + +    G  + AH+ KSG L +    + L+  Y+K  L   A  +FDE P    
Sbjct: 11  LTRYAATQSLFLGAHIHAHLLKSGLLHAF--RNHLLSFYSKCRLPGSARRVFDETPDPCH 68

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V  ++L++ Y    L    L   R M A G+  + F L  +L+ CA    A  G QVHA 
Sbjct: 69  VSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLK-CA--PDAGLGVQVHAV 125

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            +     L  D+F+ ++L+ MYG  G V +A +VF+      E   +++ V W  M+  +
Sbjct: 126 AV--STGLSGDIFVANALVAMYGGFGFVDEARRVFD------EAARDRNAVSWNGMMSAF 177

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            +N    + ++L+  M+ +G +P+E  F  V++AC+ +  ++ G +     VH   +  G
Sbjct: 178 VKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRK-----VHAMVVRTG 232

Query: 333 PEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC----HDCGK 384
            +      + LVD+  + G++  A  +  ++       + V  W A +S C    HD   
Sbjct: 233 YDKDVFTANALVDMYSKLGDIHMAALVFGKV-----PKTDVVSWNAFISGCVLHGHDQHA 287

Query: 385 FEL 387
            EL
Sbjct: 288 LEL 290


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 239/443 (53%), Gaps = 31/443 (6%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKT 73
           I   S L++ Y+TC      G L +  K  +    RN + +  +I  +  NG+ L A+  
Sbjct: 111 IFVSSALIVMYSTC------GKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164

Query: 74  FSFMHVH------GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSAL 127
           F  + +        +FLD+  + S ++A + V      + + + V K G+   V VG+ L
Sbjct: 165 FKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTL 224

Query: 128 IDLYAKLLL--IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-LMPALGLD 184
           +D YAK     +  A  +FD+I  K+ V  N+++S Y ++ +     ++ R L+    + 
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVT 284

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
           ++  TLS +L A +   A   G+ +H  +IR    L +DV + +S+I+MY KCG V  A 
Sbjct: 285 FNCITLSTVLLAVSHSGALRIGKCIHDQVIR--MGLEDDVIVGTSIIDMYCKCGRVETA- 341

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
               LA  R++   NK+V  WT+M+  YG +G+  + ++L+ AM+ +G +P+ + FV+V+
Sbjct: 342 ---RLAFDRMK---NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           +ACSH G   +G  +F  M   + +EPG EHY C+VDLL RAG L KA+ LI +M     
Sbjct: 396 AACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKM----K 451

Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQ 424
                 +W +LL+AC      EL +++  +  ELDP N G Y++LS++YA    W ++ +
Sbjct: 452 MEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVER 511

Query: 425 LRELMKEKGLKKDVGCSWIEVTG 447
           +R  MK +GL K  G S +E+ G
Sbjct: 512 VRMTMKNRGLVKPPGFSLLELNG 534



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 187/390 (47%), Gaps = 49/390 (12%)

Query: 29  TCRH--KKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           T RH  ++NL TL N  ++++  +   +N VI+D  R+G    AL+ FS M    ++   
Sbjct: 19  TERHTERQNLTTLFN--RYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTR 76

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
            +   ++ A +S+ D   GKQ        G+ S +FV SALI +Y+    + DA  +FDE
Sbjct: 77  SSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD---------YDHFTLSALLRAC 197
           IP +N V   +++ GY    L    L+ V L   L ++          D   + +++ AC
Sbjct: 137 IPKRNIVSWTSMIRGY---DLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISAC 193

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL--VTKALQVFNLAGHRLE 255
           + ++A      +H+++I++  + G  V + ++L++ Y K G   V  A ++F+       
Sbjct: 194 SRVAAKGLTESIHSFVIKRGFDRG--VSVGNTLLDAYAKGGEGGVAVARKIFDQI----- 246

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVK 314
             ++KD V + S++ VY ++G   E   ++  ++       + +   TV+ A SH+G ++
Sbjct: 247 --VDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALR 304

Query: 315 LGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
           +G       +HD  +  G E      + ++D+ C+ G ++ A    + M ++     +V 
Sbjct: 305 IG-----KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNK-----NVR 354

Query: 371 MWGALLSACHDCGKFELGKLAAQKALELDP 400
            W A+++     G        A KALEL P
Sbjct: 355 SWTAMIAGYGMHGH-------AAKALELFP 377


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 202/363 (55%), Gaps = 14/363 (3%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           +++ L   L A   V     G QV +HV K G+ SS+FV ++L++ Y K   I  A  +F
Sbjct: 91  NSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVF 150

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           +E+PV+N V   A++SG+         +EL R M   G+  D  TL +++ ACA   A +
Sbjct: 151 EEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALD 210

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G  +HAY I K   L  D+ + ++L++MY KCG + +A QVF            KD   
Sbjct: 211 IGYWLHAY-IEKYFVL-TDLELSTALVDMYAKCGCIERAKQVFVHMP-------VKDTTA 261

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W+SM+  +  +G  ++ I  ++ ML     PD V F+ V+SAC+H G V  G  ++  M+
Sbjct: 262 WSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLML 321

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            ++ +EP  EHY C VDLLCR+G +++A+++   M        + + W +LL  C     
Sbjct: 322 -EFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTM----KIPPNAATWRSLLMGCKKKKL 376

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
             LG++ A+  LEL+P N   Y+M+SNLY+    W+++ +LR++MKEK +K   GCS IE
Sbjct: 377 LNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIE 436

Query: 445 VTG 447
           V G
Sbjct: 437 VDG 439



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 152/316 (48%), Gaps = 23/316 (7%)

Query: 103 RFGKQVQAHV-TKSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEIPVKNSVCANAL 158
           R  +Q+ AH+ T+   LSS     + I  +  L     I+ A  +F +IP  N    N+L
Sbjct: 2   RVLRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSL 61

Query: 159 LSGYCEA-KLWAGGLELVRLMPALGLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           + GY +   L    + L + +   G    + FTL+ +L+ACA ++A   G QVH+++++ 
Sbjct: 62  IKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKD 121

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
               G+ +F+Q+SL+  YGKC  +  A +VF       E    +++V WT+M+  + R G
Sbjct: 122 --GFGSSLFVQTSLVNFYGKCEEIGFARKVF-------EEMPVRNLVAWTAMISGHARVG 172

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
              E ++L+  M   G +PD +  V+V+SAC+  G + +G  +    +  Y +    E  
Sbjct: 173 AVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGY-WLHAYIEKYFVLTDLELS 231

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQK 394
           + LVD+  + G +++A ++   M          + W +++   A H   +  +       
Sbjct: 232 TALVDMYAKCGCIERAKQVFVHM-----PVKDTTAWSSMIMGFAYHGLAQDAIDAFQQML 286

Query: 395 ALELDPHNVGIYVMLS 410
             E+ P +V    +LS
Sbjct: 287 ETEVTPDHVTFLAVLS 302



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 118/276 (42%), Gaps = 27/276 (9%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VH+H  + G      +  Q+ L+  Y  C   + +G      + +  RN + +  +IS 
Sbjct: 113 QVHSHVLKDGFG--SSLFVQTSLVNFYGKC---EEIGFARKVFEEMPVRNLVAWTAMISG 167

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
             R G+   A++ F  M   GI  D   L S ++A         G  + A++ K   L+ 
Sbjct: 168 HARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTD 227

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           + + +AL+D+YAK   I  A+ +F  +PVK++   ++++ G+    L    ++  + M  
Sbjct: 228 LELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLE 287

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG----- 235
             +  DH T  A+L ACA       GR+  + M+          F     +E YG     
Sbjct: 288 TEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLE---------FGIEPSVEHYGCKVDL 338

Query: 236 --KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
             + GLV +A ++          +I  +   W S+L
Sbjct: 339 LCRSGLVEEAYRITTTM------KIPPNAATWRSLL 368


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/443 (32%), Positives = 238/443 (53%), Gaps = 31/443 (6%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKT 73
           I   S L++ Y+TC      G L +  K  +    RN + +  +I  +  NG+ L A+  
Sbjct: 111 IFVSSALIVMYSTC------GKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164

Query: 74  FSFMHVH------GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSAL 127
           F  + V        +FLD+  L S ++A + V      + + + V K G+   V VG+ L
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTL 224

Query: 128 IDLYAKLLL--IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-LMPALGLD 184
           +D YAK     +  A  +FD+I  K+ V  N+++S Y ++ +     E+ R L+    + 
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVT 284

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
           ++  TLS +L A +   A   G+ +H  +IR    L +DV + +S+I+MY KCG V  A 
Sbjct: 285 FNAITLSTVLLAVSHSGALRIGKCIHDQVIR--MGLEDDVIVGTSIIDMYCKCGRVETAR 342

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           + F+    R++   NK+V  WT+M+  YG +G+  + ++L+ AM+ +G +P+ + FV+V+
Sbjct: 343 KAFD----RMK---NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           +ACSH G    G  +F  M   + +EPG EHY C+VDLL RAG L KA+ LI  M     
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM----K 451

Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQ 424
                 +W +LL+AC      EL +++  +  ELD  N G Y++LS++YA    W ++ +
Sbjct: 452 MKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVER 511

Query: 425 LRELMKEKGLKKDVGCSWIEVTG 447
           +R +MK +GL K  G S +E+ G
Sbjct: 512 VRMIMKNRGLVKPPGFSLLELNG 534



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 188/390 (48%), Gaps = 49/390 (12%)

Query: 29  TCRH--KKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           T RH  ++NL TL N  ++++  +   +N VI+D  R+G    AL  FS M    ++   
Sbjct: 19  TERHTERQNLTTLFN--RYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTR 76

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
            +   ++ A +S+ D   GKQ        G+ S +FV SALI +Y+    + DA  +FDE
Sbjct: 77  SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD---------YDHFTLSALLRAC 197
           IP +N V   +++ GY    L    L+ V L   L +D          D   L +++ AC
Sbjct: 137 IPKRNIVSWTSMIRGY---DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC 193

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL--VTKALQVFNLAGHRLE 255
           + + A      +H+++I++  + G  V + ++L++ Y K G   V  A ++F+       
Sbjct: 194 SRVPAKGLTESIHSFVIKRGFDRG--VSVGNTLLDAYAKGGEGGVAVARKIFDQI----- 246

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVK 314
             ++KD V + S++ VY ++G   E  +++  ++ N     + +   TV+ A SH+G ++
Sbjct: 247 --VDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALR 304

Query: 315 LGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
           +G       +HD  +  G E      + ++D+ C+ G ++ A K  + M ++     +V 
Sbjct: 305 IG-----KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNK-----NVR 354

Query: 371 MWGALLSACHDCGKFELGKLAAQKALELDP 400
            W A+++     G        A KALEL P
Sbjct: 355 SWTAMIAGYGMHGH-------AAKALELFP 377


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/405 (34%), Positives = 216/405 (53%), Gaps = 16/405 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R+ + +N +I+ + + G    A+  F  M   GI L  +   S L+  TS+ D   G
Sbjct: 135 LPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNG 194

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           + +   VTK G+ S V V +ALID+Y K     DA ++F+ I  K+    N+++S + + 
Sbjct: 195 RAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQC 254

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL---GN 222
               G L L   M    +  D  T++A+L AC+ L+A   GR++H YMI         G+
Sbjct: 255 DDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGD 314

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           DV + +++++MY KCG +  A  +F+L         NKDV  W  M+  Y  +GY  E +
Sbjct: 315 DVLLNNAIMDMYAKCGCMKNADIIFDLMR-------NKDVASWNIMIMGYAMHGYGTEAL 367

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            ++  M     KPD V FV V+SACSH G V  G  +   M  ++ + P  EHY+C++D+
Sbjct: 368 DMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDM 427

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
           L RAG L +A+ L      R     ++ +W ALL AC   G  ELG +  +K  +L+P +
Sbjct: 428 LGRAGHLGEAYDLAQ----RIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLEPKH 483

Query: 403 V--GIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              G Y+++S+LY     ++E  ++R  MKE+ +KK  GCSWIE+
Sbjct: 484 CGSGSYILMSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIEL 528



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 131/285 (45%), Gaps = 15/285 (5%)

Query: 43  LKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV 99
           L F +P   RN   +N +I+ F  NG      + +  M   G+  D +     + A    
Sbjct: 31  LVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVMPDKFTFPCVVRACCEF 90

Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
            + R   ++   + K G   +VFVGSAL++ Y K+    DAE +F+E+P ++ V  NA++
Sbjct: 91  MEVR---KIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMI 147

Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           +GY +       + + + M   G+    FT +++L     +     GR +H  + +    
Sbjct: 148 NGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKM--G 205

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
             + V + ++LI+MYGKC     AL +F +          KD+  W S++  + +     
Sbjct: 206 YSSCVAVSNALIDMYGKCKHTEDALMIFEMIN-------EKDLFSWNSIISAHEQCDDHD 258

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
             ++L+  ML +   PD +    V+ ACSH   +  G E   +M+
Sbjct: 259 GTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMI 303



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 23/155 (14%)

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +SLI MY +C  + +A+ VF    H       ++V  + +++  +  NG   +  + Y+ 
Sbjct: 14  TSLINMYSRCNQMEEAVLVFRDPYHE------RNVFAYNAIIAGFVANGLAADGFQFYKR 67

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLL 343
           M   G  PD+  F  V+ AC    +V+         +H    + G E      S LV+  
Sbjct: 68  MRSVGVMPDKFTFPCVVRACCEFMEVR--------KIHGCLFKMGLELNVFVGSALVNTY 119

Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            +    + A K+  E+ +R      V +W A+++ 
Sbjct: 120 LKVDGTEDAEKVFEELPER-----DVVLWNAMING 149


>gi|293331543|ref|NP_001169748.1| uncharacterized protein LOC100383629 [Zea mays]
 gi|224031397|gb|ACN34774.1| unknown [Zea mays]
          Length = 546

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 131/423 (30%), Positives = 217/423 (51%), Gaps = 17/423 (4%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           L+  Y  C    + G+       +  RN + +  ++S   R      +L  F  M    +
Sbjct: 102 LITAYFEC---SSPGSAERVFDGMADRNVITWTAMVSGMARAERYSESLSLFRQMR-RAV 157

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             +  +  SSL A    + AR G+Q+     K+G  + + V S L+D+Y+K  L+ DA  
Sbjct: 158 DANRASYSSSLLACAGSRAAREGQQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALR 217

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F      + V    +L+G+ +  L      L   M   G+  D   +SA+L A    + 
Sbjct: 218 VFRSGQDPDEVSLTVILAGFAQNGLEEEAFRLFAEMVGKGIRVDANMVSAVLGAFGASAP 277

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G+Q+HA  I++C   G + ++ + LI MY KCG + ++++VF+       G  +K+ 
Sbjct: 278 FALGKQIHALAIKRC--FGGNTYVCNGLINMYSKCGELQESIRVFD-------GTPSKNT 328

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V W S++  Y R+G+  EV  L+E+M  +G KP +V F++++  CSH G  + G+E  + 
Sbjct: 329 VTWNSIIAAYARHGHGWEVFGLFESMEADGVKPTDVTFLSLLHGCSHVGSPRKGLEILDS 388

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M   Y + P  EHY+C+VD+L RA +LD A   I +    G    S  +W +L+ AC   
Sbjct: 389 MPSKYGIHPKVEHYACVVDMLGRASQLDDAKAFIED----GPFKDSALLWQSLMGACSFH 444

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
               +G+ AA+K L LDP     YV+LSN+Y+    WD+  ++ + M+ +GL+KD G SW
Sbjct: 445 KNSGVGECAAEKLLLLDPDCTAAYVLLSNVYSSEGRWDDRARIMKRMRARGLRKDTGKSW 504

Query: 443 IEV 445
           IE+
Sbjct: 505 IEL 507



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 132/267 (49%), Gaps = 24/267 (8%)

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G  + V VG+ALI  Y +      AE +FD +  +N +   A++SG   A+ ++  L L 
Sbjct: 91  GLDAEVSVGNALITAYFECSSPGSAERVFDGMADRNVITWTAMVSGMARAERYSESLSLF 150

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           R M    +D +  + S+ L ACAG  AA  G+Q+H   ++    L  D+ ++S L++MY 
Sbjct: 151 RQMR-RAVDANRASYSSSLLACAGSRAAREGQQIHGLAVK--AGLETDLHVESELMDMYS 207

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCGL+  AL+VF        G+ + D V  T +L  + +NG  +E  +L+  M+  G + 
Sbjct: 208 KCGLMEDALRVFR------SGQ-DPDEVSLTVILAGFAQNGLEEEAFRLFAEMVGKGIRV 260

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP--GPEHYSC--LVDLLCRAGELDK 351
           D      V+ A   +    LG +     +H   ++   G   Y C  L+++  + GEL +
Sbjct: 261 DANMVSAVLGAFGASAPFALGKQ-----IHALAIKRCFGGNTYVCNGLINMYSKCGELQE 315

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSA 378
           + ++ +     G  S +   W ++++A
Sbjct: 316 SIRVFD-----GTPSKNTVTWNSIIAA 337



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 113/252 (44%), Gaps = 24/252 (9%)

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM--PALGLDY-D 186
           +Y +     DA  +FDE+ +++SV  N+LLS    A      L L+R M   A G    D
Sbjct: 1   MYGRCGCRGDAVRVFDEMALRDSVSWNSLLSASASAT---DALALLRRMLSAAPGAAACD 57

Query: 187 HFTLSALLRACAGLSAAEFGRQVHA-YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQ 245
           H TL+ +L ACA          + A + +   C L  +V + ++LI  Y +C     A +
Sbjct: 58  HATLTTVLSACARAGGGTGSASLPAVHGLAASCGLDAEVSVGNALITAYFECSSPGSAER 117

Query: 246 VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVIS 305
           VF+       G  +++V+ WT+M+    R   + E + L+  M       +  ++ + + 
Sbjct: 118 VFD-------GMADRNVITWTAMVSGMARAERYSESLSLFRQM-RRAVDANRASYSSSLL 169

Query: 306 ACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLD 361
           AC+ +   + G +     +H   ++ G E      S L+D+  + G ++ A ++     D
Sbjct: 170 ACAGSRAAREGQQ-----IHGLAVKAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQD 224

Query: 362 RGHGSSSVSMWG 373
               S +V + G
Sbjct: 225 PDEVSLTVILAG 236


>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/426 (31%), Positives = 215/426 (50%), Gaps = 45/426 (10%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N +I  F   G  +  ++ +S M  +G++ D Y L   L A   ++    G+       K
Sbjct: 74  NTMIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVK 133

Query: 115 SGWLSSVFVGSALIDLY-------------------------------AKLLLIHDAELM 143
            G+   +FVG+ LI +Y                               AK+  +  A ++
Sbjct: 134 LGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARML 193

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           FDE P+K+     +++SGY +   +  GL++ RLM + GL+ D   L ++L ACA L A 
Sbjct: 194 FDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAM 253

Query: 204 EFGRQVHAYMIRKCCNLGN--DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKD 261
           E G  VH Y+ +    LG+   V + + LI+MY KCG +  A ++F       +G   +D
Sbjct: 254 EIGVWVHRYLDQ----LGHPLSVRLSTGLIDMYAKCGSLDIAKKLF-------DGMSQRD 302

Query: 262 VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFE 321
            + W +M+     NG     ++L+  M   G KPD++ F+ + +ACS++G     I    
Sbjct: 303 TICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLN 362

Query: 322 WMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
            M   Y +EP  EHY C+VDLL RAG L +A +LI +M +    +     W ALLSAC  
Sbjct: 363 SMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCS 422

Query: 382 CGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCS 441
            G+ E+ + AAQ+   L+ H+ G YV+LSNLYA     D + ++R++M+ +G+ K  GCS
Sbjct: 423 HGQTEVAEDAAQRLFHLE-HHSGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCS 481

Query: 442 WIEVTG 447
            +++ G
Sbjct: 482 SVKING 487



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 133/305 (43%), Gaps = 46/305 (15%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLL---LIHDAELMFDEIPVKNSVCANALLSGY 162
           K+  A V   G  +  F  S L+   +  L   L H  +L F +I        N ++  +
Sbjct: 22  KEAHAQVLTCGLGTDSFALSRLLAFCSHPLHGSLPHAWKL-FQQIQHPTICICNTMIKAF 80

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
                    +++   M   GL  D++TL  +L+ACAGL +   G   H   ++       
Sbjct: 81  VLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVK--LGFWF 138

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEIN---------- 259
           D+F+ ++LI MY   G V  A  +F+             ++G+   G++           
Sbjct: 139 DIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAP 198

Query: 260 -KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI- 317
            KD  +W S++  Y +N  FKE ++++  M   G +PDE   V+++ AC+H G +++G+ 
Sbjct: 199 MKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVW 258

Query: 318 --EYFEWMVH--DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
              Y + + H    +L  G      L+D+  + G LD A KL + M  R         W 
Sbjct: 259 VHRYLDQLGHPLSVRLSTG------LIDMYAKCGSLDIAKKLFDGMSQR-----DTICWN 307

Query: 374 ALLSA 378
           A++S 
Sbjct: 308 AMISG 312


>gi|413917687|gb|AFW57619.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 611

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 131/423 (30%), Positives = 217/423 (51%), Gaps = 17/423 (4%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           L+  Y  C    + G+       +  RN + +  ++S   R      +L  F  M    +
Sbjct: 167 LITAYFEC---SSPGSAERVFDGMADRNVITWTAMVSGMARAERYSESLSLFRQMR-RAV 222

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             +  +  SSL A    + AR G+Q+     K+G  + + V S L+D+Y+K  L+ DA  
Sbjct: 223 DANRASYSSSLLACAGSRAAREGQQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALR 282

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F      + V    +L+G+ +  L      L   M   G+  D   +SA+L A    + 
Sbjct: 283 VFRSGQDPDEVSLTVILAGFAQNGLEEEAFRLFAEMVGKGIRVDANMVSAVLGAFGASAP 342

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              G+Q+HA  I++C   G + ++ + LI MY KCG + ++++VF+       G  +K+ 
Sbjct: 343 FALGKQIHALAIKRC--FGGNTYVCNGLINMYSKCGELQESIRVFD-------GTPSKNT 393

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
           V W S++  Y R+G+  EV  L+E+M  +G KP +V F++++  CSH G  + G+E  + 
Sbjct: 394 VTWNSIIAAYARHGHGWEVFGLFESMEADGVKPTDVTFLSLLHGCSHVGSPRKGLEILDS 453

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M   Y + P  EHY+C+VD+L RA +LD A   I +    G    S  +W +L+ AC   
Sbjct: 454 MPSKYGIHPKVEHYACVVDMLGRASQLDDAKAFIED----GPFKDSALLWQSLMGACSFH 509

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
               +G+ AA+K L LDP     YV+LSN+Y+    WD+  ++ + M+ +GL+KD G SW
Sbjct: 510 KNSGVGECAAEKLLLLDPDCTAAYVLLSNVYSSEGRWDDRARIMKRMRARGLRKDTGKSW 569

Query: 443 IEV 445
           IE+
Sbjct: 570 IEL 572



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 132/267 (49%), Gaps = 24/267 (8%)

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G  + V VG+ALI  Y +      AE +FD +  +N +   A++SG   A+ ++  L L 
Sbjct: 156 GLDAEVSVGNALITAYFECSSPGSAERVFDGMADRNVITWTAMVSGMARAERYSESLSLF 215

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           R M    +D +  + S+ L ACAG  AA  G+Q+H   ++    L  D+ ++S L++MY 
Sbjct: 216 RQM-RRAVDANRASYSSSLLACAGSRAAREGQQIHGLAVK--AGLETDLHVESELMDMYS 272

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCGL+  AL+VF        G+ + D V  T +L  + +NG  +E  +L+  M+  G + 
Sbjct: 273 KCGLMEDALRVFR------SGQ-DPDEVSLTVILAGFAQNGLEEEAFRLFAEMVGKGIRV 325

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP--GPEHYSC--LVDLLCRAGELDK 351
           D      V+ A   +    LG +     +H   ++   G   Y C  L+++  + GEL +
Sbjct: 326 DANMVSAVLGAFGASAPFALGKQ-----IHALAIKRCFGGNTYVCNGLINMYSKCGELQE 380

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSA 378
           + ++ +     G  S +   W ++++A
Sbjct: 381 SIRVFD-----GTPSKNTVTWNSIIAA 402



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 119/261 (45%), Gaps = 24/261 (9%)

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-- 178
           V V ++L+ +Y +     DA  +FDE+ +++SV  N+LLS    A      L L+R M  
Sbjct: 57  VVVWNSLVAMYGRCGCRGDAVRVFDEMALRDSVSWNSLLSASASAT---DALALLRRMLS 113

Query: 179 PALGLDY-DHFTLSALLRACAGLSAAEFGRQVHA-YMIRKCCNLGNDVFMQSSLIEMYGK 236
            A G    DH TL+ +L ACA          + A + +   C L  +V + ++LI  Y +
Sbjct: 114 AAPGAAACDHATLTTVLSACARAGGGTGSASLPAVHGLAASCGLDAEVSVGNALITAYFE 173

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           C     A +VF+       G  +++V+ WT+M+    R   + E + L+  M       +
Sbjct: 174 CSSPGSAERVFD-------GMADRNVITWTAMVSGMARAERYSESLSLFRQM-RRAVDAN 225

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKA 352
             ++ + + AC+ +   + G +     +H   ++ G E      S L+D+  + G ++ A
Sbjct: 226 RASYSSSLLACAGSRAAREGQQ-----IHGLAVKAGLETDLHVESELMDMYSKCGLMEDA 280

Query: 353 WKLINEMLDRGHGSSSVSMWG 373
            ++     D    S +V + G
Sbjct: 281 LRVFRSGQDPDEVSLTVILAG 301


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 207/400 (51%), Gaps = 14/400 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           + P+    ++  + + G    ALK F  +   G+  D++     L A  S+++   GKQ+
Sbjct: 248 KKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQI 307

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A V K G  S V VG+ L+D Y K      A   F EI   N V  +A++SGYC+   +
Sbjct: 308 HACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQF 367

Query: 169 AGGLELVRLMPALGLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
              ++  + + +      + FT +++ +AC+ L+    G QVHA  I++  +L    + +
Sbjct: 368 EEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKR--SLIGSQYGE 425

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           S+LI MY KCG +  A +VF       E   N D+V WT+ +  +   G   E ++L+E 
Sbjct: 426 SALITMYSKCGCLDDANEVF-------ESMDNPDIVAWTAFISGHAYYGNASEALRLFEK 478

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M+  G KP+ V F+ V++ACSH G V+ G    + M+  Y + P  +HY C++D+  R+G
Sbjct: 479 MVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSG 538

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            LD+A K +  M       S    W   LS C      ELG++A ++  +LDP +   YV
Sbjct: 539 LLDEALKFMKNMPFEPDAMS----WKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYV 594

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +  NLY     W+E  ++ +LM E+ LKK++ CSWI+  G
Sbjct: 595 LPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKG 634



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 195/441 (44%), Gaps = 52/441 (11%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
           ++ Q+ ++  Y  CR  ++   L + +  LN    +    +IS +   G    A+  FS 
Sbjct: 118 VLLQNCVLQMYCECRSLEDADKLFDEMSELNA---VSRTTMISAYAEQGILDKAVGLFSG 174

Query: 77  MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
           M   G    +    + L +  + +   FG+Q+ AHV ++G  S+  + + ++++Y K   
Sbjct: 175 MLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGW 234

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           +  A+ +FD++ VK  V    L+ GY +A      L+L   +   G+++D F  S +L+A
Sbjct: 235 LVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKA 294

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA L     G+Q+HA + +    L ++V + + L++ Y KC     A + F         
Sbjct: 295 CASLEELNLGKQIHACVAK--LGLESEVSVGTPLVDFYIKCSSFESACRAFQ-------- 344

Query: 257 EINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACS------ 308
           EI + + V W++++  Y +   F+E +K ++++   N +  +   + ++  ACS      
Sbjct: 345 EIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCN 404

Query: 309 -----HTGQVK---LGIEYFEWM----------------VHDYKLEPGPEHYSCLVDLLC 344
                H   +K   +G +Y E                  V +    P    ++  +    
Sbjct: 405 IGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHA 464

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
             G   +A +L  +M+  G   +SV+ + A+L+AC   G  E GK      L    +NV 
Sbjct: 465 YYGNASEALRLFEKMVSCGMKPNSVT-FIAVLTACSHAGLVEQGKHCLDTMLR--KYNVA 521

Query: 405 I----YVMLSNLYAKFCMWDE 421
                Y  + ++YA+  + DE
Sbjct: 522 PTIDHYDCMIDIYARSGLLDE 542



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 140/317 (44%), Gaps = 15/317 (4%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           A +    M   G+ + +Y+      A   ++    G+ +   +       SV + + ++ 
Sbjct: 67  AFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNCVLQ 126

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +Y +   + DA+ +FDE+   N+V    ++S Y E  +    + L   M A G       
Sbjct: 127 MYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSM 186

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
            + LL++     A +FGRQ+HA++IR    L ++  +++ ++ MY KCG +  A +VF+ 
Sbjct: 187 YTTLLKSLVNPRALDFGRQIHAHVIR--AGLCSNTSIETGIVNMYVKCGWLVGAKRVFD- 243

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                +  + K V     M+G Y + G  ++ +KL+  ++  G + D   F  V+ AC+ 
Sbjct: 244 -----QMAVKKPVACTGLMVG-YTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACAS 297

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
             ++ LG +     V    LE      + LVD   +    + A +   E+ +    S   
Sbjct: 298 LEELNLG-KQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVS--- 353

Query: 370 SMWGALLSACHDCGKFE 386
             W A++S      +FE
Sbjct: 354 --WSAIISGYCQMSQFE 368


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 217/433 (50%), Gaps = 47/433 (10%)

Query: 49   RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
            RN + +N +I+ + +NG    AL  F  M   G   D   L S ++A   +   R G+QV
Sbjct: 956  RNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQV 1015

Query: 109  QAHVTKSG-WLSSVFVGSALIDLYAK------------------------LLL------- 136
             A V KS  +   + + +AL+D+YAK                        L+        
Sbjct: 1016 HARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSAN 1075

Query: 137  IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
            + DA+++F ++  KN +  N L++ Y +       L L   +    +   H+T   +L A
Sbjct: 1076 VEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNA 1135

Query: 197  CAGLSAAEFGRQVHAYMIRKCCNLG----NDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
            C  ++  + G+Q H +++++         +DVF+ +SL++MY K G +    +VF     
Sbjct: 1136 CGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAA 1195

Query: 253  RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
            R       D V W +M+  + +NG  K+ + L+E ML +   PD V  + V+SAC H+G 
Sbjct: 1196 R-------DNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGL 1248

Query: 313  VKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
            V+ G  YF  M  D+ + P  +HY+C++DLL RAG L +  +LI EM           +W
Sbjct: 1249 VEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEM----SMEPDAVLW 1304

Query: 373  GALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEK 432
             +LL +C      E+G+ AA K  ELDP N G YV+LSN+YA+   W ++ ++R  MK +
Sbjct: 1305 ASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHR 1364

Query: 433  GLKKDVGCSWIEV 445
            G+ K  GCSWIE+
Sbjct: 1365 GVSKQPGCSWIEI 1377



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 202/451 (44%), Gaps = 75/451 (16%)

Query: 54   FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
            +N VI+   ++     AL   + MH     L+ Y+  S+L+A  + KD+R G QV A V+
Sbjct: 860  YNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVS 919

Query: 114  KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            KS     V++GSAL+D+YAK     +A  +F+ +P +N V  N+L++ Y +       L 
Sbjct: 920  KSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALV 979

Query: 174  LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
            L   M   G   D  TL++++ ACAGL+A   GRQVHA ++ K      D+ + ++L++M
Sbjct: 980  LFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVV-KSDRFREDMVLSNALVDM 1038

Query: 234  YGKCGLVTKALQVFNLAGHR------------------------LEGEINKDVVLWTSML 269
            Y KCG    A  VF+    R                            + K+V+ W  ++
Sbjct: 1039 YAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLI 1098

Query: 270  GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYK 328
              Y +NG  +E ++L+  +      P    +  V++AC +   ++LG + +   +   ++
Sbjct: 1099 AAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFR 1158

Query: 329  LEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDR----------GHGSS------- 367
             + GPE      + LVD+  + G +D   K+   M  R          GH  +       
Sbjct: 1159 FDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDAL 1218

Query: 368  --------------SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
                          SV+M G +LSAC   G  E G+   +   E    + GI +   + Y
Sbjct: 1219 HLFERMLCSKESPDSVTMIG-VLSACGHSGLVEEGRRYFRSMTE----DHGI-IPSQDHY 1272

Query: 414  AKFCMWDEIG------QLRELMKEKGLKKDV 438
               CM D +G      ++ EL+KE  ++ D 
Sbjct: 1273 T--CMIDLLGRAGHLKEVEELIKEMSMEPDA 1301



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 178/362 (49%), Gaps = 27/362 (7%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  RN + +N +++ + R+     AL  F  M       D   L S L+A T + D   G
Sbjct: 344 MKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKG 403

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE--LMFDEIPVKNSVCANALLSGY- 162
           ++V A   K G+ SS  + +AL+ +Y+K   +  AE  L+F+    ++S   N+L+SGY 
Sbjct: 404 EEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYE 463

Query: 163 ----CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
                EA L+A       + P      +  T S+ L ACA +   + G Q+HAYMIRK  
Sbjct: 464 RHSMSEAALYALTKMQSEVTP------NQSTFSSALAACANIFLLKQGMQIHAYMIRKGY 517

Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
            +  D  ++S LI+MY KC     ++++F       E   ++DV+LW SM+     +G  
Sbjct: 518 EI--DDILRSVLIDMYCKCRQFDYSIRIF-------EARPSRDVILWNSMIFGCAYSGKG 568

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
           +  + L++ M   G K D V F+  + +C   G V+LG  YF  M+ D  + P  EHY C
Sbjct: 569 EYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMM-DESIIPRIEHYEC 627

Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +++LL + G + +    +  M        + +MW  +   C + G  +LG+ AA+   + 
Sbjct: 628 MIELLGKHGCMVELEDFVEHM----PFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDS 683

Query: 399 DP 400
           +P
Sbjct: 684 NP 685



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 166/357 (46%), Gaps = 38/357 (10%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+   +N +I+   R G P  AL  FS M+  GI      + S L+      D    +Q+
Sbjct: 114 RDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQL 173

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
             H+ K  + S+V +G+AL+D+Y    L+ DA   FD+I   N++  N ++  Y  A + 
Sbjct: 174 HGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMG 233

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +++   M + G+    +T+S  + AC   +A E GR +HA+++R      + V ++S
Sbjct: 234 DMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRH--GYEHHVHVRS 291

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHR------------------------LEGEINKDVVL 264
           S+++MY KCG +  A  +FNLA  +                         EG   +++V 
Sbjct: 292 SVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVS 351

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +ML  Y R+      + L++ M     + D +   +V+SAC+    +  G E     V
Sbjct: 352 WNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEE-----V 406

Query: 325 HDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           H + ++ G    P   + LV +  + G L  A +L+  + + G    S S W +L+S
Sbjct: 407 HAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLL--LFEMGSERDSYS-WNSLIS 460



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 131/296 (44%), Gaps = 40/296 (13%)

Query: 114  KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
            KS +++  F+ + L+  YA+L  + DA  +FDEIP  N+   NALLS +      A    
Sbjct: 788  KSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARA 847

Query: 174  LVRLMP-----------------ALGLD---------YDHFTLSAL-----LRACAGLSA 202
            L   +P                 + G D          D F L+A      L ACA    
Sbjct: 848  LFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKD 907

Query: 203  AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            +  G QVHA ++ K  +   DV++ S+L++MY KC    +A +VF       E    +++
Sbjct: 908  SRTGVQVHA-LVSKSPH-AKDVYIGSALLDMYAKCEWPEEARRVF-------EAMPERNI 958

Query: 263  VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
            V W S++  Y +NG   E + L+ +M+  G  PDEV   +V+SAC+     + G +    
Sbjct: 959  VSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHAR 1018

Query: 323  MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
            +V   +        + LVD+  + G    A  + + M  R   S +  + G   SA
Sbjct: 1019 VVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSA 1074



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 103/225 (45%), Gaps = 18/225 (8%)

Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
           + DA  +FD +P+++    NA+++    A   +  L L   M +LG+     T++++L  
Sbjct: 101 VADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSC 160

Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
           CA        RQ+H ++ ++  +  ++V + ++L+++YG C L+  A + F       + 
Sbjct: 161 CAECLDLCGARQLHGHIAKR--DFQSNVILGTALVDVYGNCFLLADARRAF-------DD 211

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            +  + + W  ++  Y   G     + ++  ML  G +P        + AC     ++ G
Sbjct: 212 ILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEG 271

Query: 317 IEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLIN 357
                  +H + L  G EH+    S +VD+  + G +D A  L N
Sbjct: 272 -----RCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFN 311


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 133/427 (31%), Positives = 227/427 (53%), Gaps = 29/427 (6%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G + N  K  +    R+ + +N +I+ + + G    A++ +  M   G+  D   +   +
Sbjct: 130 GEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLV 189

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL----------- 142
           ++   + D   GK+   +V  +G   ++ + +AL+D+++K   IH+A             
Sbjct: 190 SSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIV 249

Query: 143 --MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
             +FD++  K+ V  NA++ G  +AK     L L + M     D D  T+   L AC+ L
Sbjct: 250 SKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQL 309

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
            A + G  +H Y+ +   +L  +V + +SL++MY KCG +++AL VF+       G   +
Sbjct: 310 GALDVGIWIHRYIEKHSLSL--NVALGTSLVDMYAKCGNISEALCVFH-------GIQTR 360

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
           + + +T+++G    +G     I  +  M+  G  PDE+ F+ ++SAC H G ++ G +YF
Sbjct: 361 NSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYF 420

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
             M   + L P  +HYS +VDLL RAG L++A KL+  M       +  ++WGALL  C 
Sbjct: 421 SQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESM----PMEADAAVWGALLFGCR 476

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
             G  +LG+ AA+K LELDP + GIYV+L  +Y +  MW++  + R +M E+G++K  GC
Sbjct: 477 MHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGC 536

Query: 441 SWIEVTG 447
           S IEV G
Sbjct: 537 SSIEVNG 543



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/470 (22%), Positives = 202/470 (42%), Gaps = 63/470 (13%)

Query: 9   TGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPL 68
           TGL+L     F S  ++ +      + L      LK +   N   +NV I  F  + +P 
Sbjct: 4   TGLVLD---PFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPK 60

Query: 69  YALKTFSFMHVHG---------IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS 119
            A+  +  M   G          +   + +C+ L  ++       G  +  HV K     
Sbjct: 61  DAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNS------LGHMILGHVFKLRLEL 114

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
              V +A I ++A    + +A  +FDE PV++ V  N L++GY +       +E+ ++M 
Sbjct: 115 VSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVME 174

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL 239
           + G+  D  T+  L+ +CA L     G++ + Y+  K   L   + + ++L++M+ KCG 
Sbjct: 175 SEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYV--KANGLRMTIPLANALMDMFSKCGD 232

Query: 240 VTKALQVF-NLAGHRLEGEI-----NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           + +A ++F NL    +  ++      KDVV+W +M+G   +    ++ + L++ M  + T
Sbjct: 233 IHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNT 292

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            PDE+  +  +SACS  G + +GI +    +  + L       + LVD+  + G + +A 
Sbjct: 293 DPDEITMIHCLSACSQLGALDVGI-WIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEAL 351

Query: 354 -------------------------------KLINEMLDRGHGSSSVSMWGALLSACHDC 382
                                             NEM+D G     ++  G LLSAC   
Sbjct: 352 CVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIG-LLSACCHG 410

Query: 383 GKFELGK---LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELM 429
           G  + G+      +    L+P  +  Y ++ +L  +  + +E  +L E M
Sbjct: 411 GMIQTGRDYFSQMKSRFNLNPQ-LKHYSIMVDLLGRAGLLEEADKLMESM 459


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 137/417 (32%), Positives = 223/417 (53%), Gaps = 26/417 (6%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVIS-----DFCRNGSPLYALKTFSFMHVHGIFLDTYA 88
           G L + +K  +    RN   +N ++S     +F  NG     L  F  MH  G   D + 
Sbjct: 37  GDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENG-----LFLFREMHELGFLPDEFT 91

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           L S L     ++ +  GKQV A+V K G+  ++ VGS+L  +Y K   + + E +   + 
Sbjct: 92  LGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMR 151

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
           ++N V  N L++G  +   + G L+L  +M   GL  D  TL +++ + A L+    G+Q
Sbjct: 152 IRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQ 211

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           +HA  I+   N  + V + SSLI MY KCG +  +++      H        D VLW+SM
Sbjct: 212 IHAEAIKAGAN--SAVAVLSSLISMYSKCGCLEDSMKALLDCEH-------PDSVLWSSM 262

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  YG +G  +E + L+E M   G   ++V F++++ ACSH G  + G+ +F+ MV  Y 
Sbjct: 263 IAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYG 322

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           L+P  EHY+C+VDLL R+G LD+A  +I  M       + V +W  LLSAC      ++ 
Sbjct: 323 LKPRLEHYTCVVDLLGRSGCLDEAEAMIRSM----PLEADVVIWKTLLSACRIHRNADMA 378

Query: 389 KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
              A++ L L+P +   YV+LSN++A    W ++ ++R  M+++ +KK+ G SW+EV
Sbjct: 379 TRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEV 435



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 7/235 (2%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           +LG     +K +  RN + +N +I+   +NG     L  ++ M + G+  D   L S ++
Sbjct: 139 SLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVIS 198

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           +S  +     G+Q+ A   K+G  S+V V S+LI +Y+K   + D+     +    +SV 
Sbjct: 199 SSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVL 258

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
            +++++ Y         + L   M   GL  +  T  +LL AC+     E G      M+
Sbjct: 259 WSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMV 318

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
            K   L   +   + ++++ G+ G + +A  +           +  DVV+W ++L
Sbjct: 319 EK-YGLKPRLEHYTCVVDLLGRSGCLDEAEAMIR------SMPLEADVVIWKTLL 366


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/438 (31%), Positives = 227/438 (51%), Gaps = 40/438 (9%)

Query: 33  KKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           KK +         +N R+ + +N +I+ + ++G    A + F    V  +F  T A+ S 
Sbjct: 232 KKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWT-AMVSG 290

Query: 93  LTASTSVKDAR--FGK-----QVQAHVTKSGWLS-----------------SVFVGSALI 128
              +  V++AR  F K     +V  +   +G++                  +V   + +I
Sbjct: 291 YIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMI 350

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
             YA+   I +A+ +FD++P ++ V   A+++GY ++      L L   M   G   +  
Sbjct: 351 TGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRS 410

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           + S+ L  CA + A E G+Q+H  +++     G   F+ ++L+ MY KCG + +A  +F 
Sbjct: 411 SFSSALSTCADVVALELGKQLHGRLVKGGYETG--CFVGNALLLMYCKCGSIEEANDLFK 468

Query: 249 -LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
            +AG        KD+V W +M+  Y R+G+ +  ++ +E+M   G KPD+   V V+SAC
Sbjct: 469 EMAG--------KDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSAC 520

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           SHTG V  G +YF  M  DY + P  +HY+C+VDLL RAG L+ A  L+  M        
Sbjct: 521 SHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM----PFEP 576

Query: 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRE 427
             ++WG LL A    G  EL + AA K   ++P N G+YV+LSNLYA    W ++G+LR 
Sbjct: 577 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 636

Query: 428 LMKEKGLKKDVGCSWIEV 445
            M++KG+KK  G SWIE+
Sbjct: 637 RMRDKGVKKVPGYSWIEI 654



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 171/405 (42%), Gaps = 50/405 (12%)

Query: 32  HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
             +NLG      + +  R+   +N ++S + +NG    A   F  M      +   AL S
Sbjct: 138 RNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKND-VSWNALLS 196

Query: 92  SLTASTSVKDA-----------------------RFGKQVQA-HVTKSGWLSSVFVGSAL 127
           +   ++ +++A                       +  K V+A     S  +  V   + +
Sbjct: 197 AYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTI 256

Query: 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
           I  YA+   I +A  +FDE PV++     A++SGY + ++     EL   MP    + + 
Sbjct: 257 ITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP----ERNE 312

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
            + +A+L         E  +++   M   C N    V   +++I  Y +CG +++A  +F
Sbjct: 313 VSWNAMLAGYVQGERMEMAKELFDVM--PCRN----VSTWNTMITGYAQCGKISEAKNLF 366

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
           +    R       D V W +M+  Y ++G+  E ++L+  M   G + +  +F + +S C
Sbjct: 367 DKMPKR-------DPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTC 419

Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
           +    ++LG +    +V     E G    + L+ + C+ G +++A  L  EM     G  
Sbjct: 420 ADVVALELGKQLHGRLVKG-GYETGCFVGNALLLMYCKCGSIEEANDLFKEMA----GKD 474

Query: 368 SVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            VS W  +++  + H  G+  L    + K   L P +  +  +LS
Sbjct: 475 IVS-WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 150/369 (40%), Gaps = 57/369 (15%)

Query: 48  PR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           PR + + +N +IS + RNG    A K F  M    + +    +      + ++  AR   
Sbjct: 91  PRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL-VSWNVMIKGYVRNRNLGKARELF 149

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++        W       + ++  YA+   + DA  +FD +P KN V  NALLS Y +  
Sbjct: 150 EIMPERDVCSW-------NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNS 202

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
                  L +      L   +  L   ++    + A +F   ++            DV  
Sbjct: 203 KMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNV----------RDVVS 252

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            +++I  Y + G + +A Q+F+      E  + +DV  WT+M+  Y +N   +E  +L++
Sbjct: 253 WNTIITGYAQSGKIDEARQLFD------ESPV-QDVFTWTAMVSGYIQNRMVEEARELFD 305

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM----------------------- 323
            M     + +EV++  +++      ++++  E F+ M                       
Sbjct: 306 KM----PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISE 361

Query: 324 ---VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
              + D   +  P  ++ ++    ++G   +A +L  +M +R  G  + S + + LS C 
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM-EREGGRLNRSSFSSALSTCA 420

Query: 381 DCGKFELGK 389
           D    ELGK
Sbjct: 421 DVVALELGK 429


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 209/404 (51%), Gaps = 23/404 (5%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           + ++ VI+ + + G    AL  F  M ++G+  +   L S L+   SV    +GKQ  A+
Sbjct: 336 ITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAY 395

Query: 112 VTKS----GW---LSSVFVGSALIDLYAKLLLIHDAELMFDEI--PVKNSVCANALLSGY 162
           V K+     W      + V + LID+YAK      A  +FD I    KN V    ++ GY
Sbjct: 396 VIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGY 455

Query: 163 CEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            +       L+L   +      L  + FTLS  L ACA L     GRQ+HAY +R   N 
Sbjct: 456 AQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNE-NE 514

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
              +++ + LI+MY K G +  A  VF+    R       +VV WTS++  YG +G  +E
Sbjct: 515 SEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-------NVVSWTSLMTGYGMHGRGEE 567

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            + L++ M   G   D + F+ V+ ACSH+G V  G+ YF  MV  + + PG EHY+C+V
Sbjct: 568 ALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMV 627

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RAG L++A +LI  M        +  +W ALLSA       ELG+ AA K  EL  
Sbjct: 628 DLLGRAGRLNEAMELIKNM----SMEPTAVVWVALLSASRIHANIELGEYAASKLTELGA 683

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            N G Y +LSNLYA    W ++ ++R LMK  G++K  GCSWI+
Sbjct: 684 ENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQ 727



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 181/377 (48%), Gaps = 65/377 (17%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVH---GIFLDTYALCSSLTASTSVKDARFGKQV 108
           + +N +++ + + G    AL+    M  H    +  D   L + L A  SV   + GKQV
Sbjct: 197 VSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQV 256

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE---- 164
                ++G +  VFVG+AL+ +YAK   +++A  +F+ I  K+ V  NA+++GY +    
Sbjct: 257 HGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSF 316

Query: 165 ----------------------AKLWAG---------GLELVRLMPALGLDYDHFTLSAL 193
                                 + + AG          L++ R M   GL+ +  TL++L
Sbjct: 317 DSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASL 376

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLG-----NDVFMQSSLIEMYGKCGLVTKALQVFN 248
           L  CA + A  +G+Q HAY+I+   NL      +D+ + + LI+MY KC     A  +F+
Sbjct: 377 LSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFD 436

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT--KPDEVAFVTVISA 306
                +EG+ +K+VV WT M+G Y ++G   + +KL+  +    T  KP+       + A
Sbjct: 437 ----SIEGK-DKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMA 491

Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-----SCLVDLLCRAGELDKAWKLINEMLD 361
           C+  G+++LG +     +H Y L    E       +CL+D+  ++G++D A  + + M  
Sbjct: 492 CARLGELRLGRQ-----LHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKL 546

Query: 362 RGHGSSSVSMWGALLSA 378
           R     +V  W +L++ 
Sbjct: 547 R-----NVVSWTSLMTG 558



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 125/257 (48%), Gaps = 16/257 (6%)

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G   D Y     L A   +   R G  V A V  +G  S+VF+ ++++ +Y +   + DA
Sbjct: 122 GWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDA 181

Query: 141 ELMFDEI---PVKNSVCANALLSGYCEAKLWAGGLELVRLMP---ALGLDYDHFTLSALL 194
             MFDE+    +++ V  N++L+ Y +       L +   M    +L L  D  TL  +L
Sbjct: 182 HQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNIL 241

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            ACA + A + G+QVH + +R    L +DVF+ ++L+ MY KC  + +A +VF       
Sbjct: 242 PACASVFALQHGKQVHGFSVRN--GLVDDVFVGNALVSMYAKCSKMNEANKVF------- 292

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
           EG   KDVV W +M+  Y + G F   + L++ M     K D + +  VI+  +  G   
Sbjct: 293 EGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGF 352

Query: 315 LGIEYFEWMVHDYKLEP 331
             ++ F  M   Y LEP
Sbjct: 353 EALDVFRQM-QLYGLEP 368



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 29/256 (11%)

Query: 156 NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
           NAL+    +  L    L     M  LG   DH+T   +L+AC  + +   G  VHA +  
Sbjct: 96  NALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIV-- 153

Query: 216 KCCN-LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
            C N LG++VF+ +S++ MYG+CG +  A Q+F+     LE +I +D+V W S+L  Y +
Sbjct: 154 -CANGLGSNVFICNSIVAMYGRCGALDDAHQMFD---EVLERKI-EDIVSWNSILAAYVQ 208

Query: 275 NGYFKEVIKLYEAMLMNGT---KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
            G  +  +++   M  + +   +PD +  V ++ AC+    ++ G +     VH + +  
Sbjct: 209 GGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQ-----VHGFSVRN 263

Query: 332 GPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE- 386
           G        + LV +  +  ++++A K+       G     V  W A+++     G F+ 
Sbjct: 264 GLVDDVFVGNALVSMYAKCSKMNEANKVF-----EGIKKKDVVSWNAMVTGYSQIGSFDS 318

Query: 387 ---LGKLAAQKALELD 399
              L K+  ++ ++LD
Sbjct: 319 ALSLFKMMQEEDIKLD 334


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 200/363 (55%), Gaps = 13/363 (3%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D   + S + A   + +   GK + ++  + G   ++ V +A++D+Y K   I  A+ +F
Sbjct: 10  DEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVF 69

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
           + I  K+ +   ++LSG  ++  +   L L R M    ++ D  TL  +L ACA   A +
Sbjct: 70  NRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALD 129

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G+ +H  + +   N   D+ ++++L++MY KCG +  ALQVF     R       +V  
Sbjct: 130 QGKYIHLLIDKFEINC--DLVLETALVDMYAKCGSIDLALQVFRRMRVR-------NVFT 180

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           W +M+G    +G+ ++ I L++ M  +   PD+V F+ ++ ACSH G V  G+  F+ M 
Sbjct: 181 WNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMK 240

Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           + +++EP  EHY C+VDLLCRA ++D A   I  M  + +      +W  LL AC   G 
Sbjct: 241 NKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANS----VLWATLLGACRSGGH 296

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           F+L +   ++ +EL+P + G YVMLSNLYA    WD   +LR+ MK KG++K  GCSWIE
Sbjct: 297 FDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIE 356

Query: 445 VTG 447
           + G
Sbjct: 357 LNG 359



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 11/261 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  ++ L +  ++S   ++G    +L  F  M +H I  D   L   L+A         G
Sbjct: 72  IREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQG 131

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K +   + K      + + +AL+D+YAK   I  A  +F  + V+N    NA++ G    
Sbjct: 132 KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMH 191

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L   M    L  D  T  ALL AC+     + G  +   M  K        F
Sbjct: 192 GHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNK--------F 243

Query: 226 MQSSLIEMYG-KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
                +E YG    L+ +A +V +         I  + VLW ++LG     G+F    K+
Sbjct: 244 QIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKI 303

Query: 285 YEAMLMNGTKPDEVAFVTVIS 305
              ++    +PD      ++S
Sbjct: 304 XRRVI--ELEPDSCGRYVMLS 322



 Score = 41.6 bits (96), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 16/127 (12%)

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCR 345
           ++  +PDEV  V+++ AC+  G ++ G      ++H Y  E G +      + ++D+ C+
Sbjct: 4   LDNLRPDEVTMVSLVPACAQLGNLERG-----KLLHSYSKELGLDENLSVNNAILDMYCK 58

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNV 403
             +++ A ++ N + ++      V  W ++LS     G F+  L      +  +++P  +
Sbjct: 59  CDDIESAQEVFNRIREK-----DVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEI 113

Query: 404 GIYVMLS 410
            +  +LS
Sbjct: 114 TLVGVLS 120


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 124/394 (31%), Positives = 210/394 (53%), Gaps = 14/394 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++S F    +  + L+ F  +   G+  + Y     L   TS+ D RFG QV A V 
Sbjct: 432 WNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVL 491

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           KSG+     V   L+D+Y +     +A L+FD +  ++      ++S Y +       +E
Sbjct: 492 KSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIE 551

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
             R M       +  TL+  L  C+ L+    G Q+H+Y I+   +  N   + S+L++M
Sbjct: 552 CFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIK---SGWNSSVVSSALVDM 608

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A  +F+ +          D+V W +++  Y ++G+  + ++ ++ M+  G 
Sbjct: 609 YVKCGNLADAEMLFDESD-------THDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGN 661

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            PDE+ FV V+SACSH G +  G  YF+ +   Y + P  EHY+C+VD+L +AG+L +A 
Sbjct: 662 VPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAE 721

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
            LINEM      +   S+W  +L AC   G  E+ + AA+K  E  P ++   ++LSN+Y
Sbjct: 722 SLINEM----PLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIY 777

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           A    W+++ +LR ++ ++G+KK+ GCSWIE+ G
Sbjct: 778 ADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEING 811



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 155/369 (42%), Gaps = 49/369 (13%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           +++IS F R+     A   F  M   G+  + Y        ++   D    + + AH+ K
Sbjct: 332 SLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVK 391

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           SG+  +  V  A++ +Y K   + DA L FD +   +    N LLSG+        GL +
Sbjct: 392 SGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRI 451

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
            + +   G+  + +T   +LR C  L    FG QVHA +++       D  +   L++MY
Sbjct: 452 FKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKS--GFQGDYDVSKMLLDMY 509

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            + G  T A  VF+    RL+    +DV  WT ++  Y +    ++ I+ + +ML    +
Sbjct: 510 VQAGCFTNARLVFD----RLK---ERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKR 562

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---YSCLVDLLCRAGELDK 351
           P++    T +S CS    +  G++     +H Y ++ G       S LVD+  + G L  
Sbjct: 563 PNDATLATSLSVCSDLACLGSGLQ-----LHSYTIKSGWNSSVVSSALVDMYVKCGNLAD 617

Query: 352 A--------------WKLI-----------------NEMLDRGHGSSSVSMWGALLSACH 380
           A              W  I                  EM+D G+    ++  G +LSAC 
Sbjct: 618 AEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVG-VLSACS 676

Query: 381 DCGKFELGK 389
             G  + G+
Sbjct: 677 HAGLLDEGR 685



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 129/272 (47%), Gaps = 12/272 (4%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           L +YA  ++L    + +  R GK + A + +SG     F+  +L+++Y K   + DA  +
Sbjct: 60  LRSYA--AALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSV 117

Query: 144 FDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           FD +P ++ V   A++S    A      L L   M   G+  + F L+A L+AC   S  
Sbjct: 118 FDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDL 177

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
            F  QVHA  ++       D ++ SSL+E Y  CG V  A +        L+  +  DV 
Sbjct: 178 GFTPQVHAQAVK--LEGLFDPYVSSSLVEAYVSCGEVDVAERAL------LDSPVRSDVS 229

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W ++L  Y R+G + +V+ +++ ++ +G +  +    TV+  C   G  K G +    +
Sbjct: 230 -WNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSG-QAVHGL 287

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           V    LE      +CL+++  +    + A+++
Sbjct: 288 VIKRGLETDRVLNNCLIEMYSKCLSAEDAYEV 319



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/327 (19%), Positives = 144/327 (44%), Gaps = 18/327 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +++++ R+G     +  F  +   G  +  Y L + L     +  A+ G+ V
Sbjct: 225 RSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAV 284

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K G  +   + + LI++Y+K L   DA  +F  I   + V  + ++S +    + 
Sbjct: 285 HGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMA 344

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
               ++   M  +G+  + +T   L    +        R +HA++++   +    V    
Sbjct: 345 PEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVC--D 402

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +++ MY K G V  A+  F+L    ++G    D+  W ++L  +      +  +++++ +
Sbjct: 403 AIVGMYVKTGAVQDAILAFDL----MQG---PDIASWNTLLSGFYSGNNCEHGLRIFKEL 455

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSC---LVDLLC 344
           +  G   ++  +V ++  C+    ++ G +     VH   L+ G +  Y     L+D+  
Sbjct: 456 ICEGVLANKYTYVGILRCCTSLMDLRFGCQ-----VHACVLKSGFQGDYDVSKMLLDMYV 510

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSM 371
           +AG    A  + + + +R   S +V M
Sbjct: 511 QAGCFTNARLVFDRLKERDVFSWTVVM 537


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 195/341 (57%), Gaps = 13/341 (3%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           GKQ+ AH  K+G+ S + V S ++D+Y K   + +A ++F+ I   + V   +++SG  +
Sbjct: 411 GKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVD 470

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
                  L +   M    +  D +T + L++A + ++A E GRQ+HA +I+  C   +D 
Sbjct: 471 NGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDC--VSDP 528

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           F+ +SL++MY KCG +  A ++F     R       ++ LW +ML    ++G  +E + L
Sbjct: 529 FVGTSLVDMYAKCGNIEDAYRLFKKMNVR-------NIALWNAMLVGLAQHGNAEEAVNL 581

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
           +++M  +G +PD V+F+ ++SACSH G      EY   M +DY +EP  EHYSCLVD L 
Sbjct: 582 FKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALG 641

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
           RAG + +A K+I  M  +    +S S+  ALL AC   G  E GK  A +   L+P +  
Sbjct: 642 RAGLVQEADKVIETMPFK----ASASINRALLGACRIQGDVETGKRVAARLFALEPFDSA 697

Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            YV+LSN+YA    WD++   R++MK K +KKD G SWI+V
Sbjct: 698 AYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDV 738



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 196/420 (46%), Gaps = 33/420 (7%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           VH +  + GL     +     L+  Y+ C   ++   L     ++  R+ + +N+++  +
Sbjct: 205 VHGYAIKIGLEWDVFV--SGALVNIYSKCGRMRDARLL---FDWMRERDVVLWNMMLKGY 259

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAS--TSVKDARFGKQVQAHVTKSGWLS 119
            + G    A + FS  H  G+  D +++   L         D   GKQV     KSG  S
Sbjct: 260 VQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDS 319

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
            V V ++L+++Y+K+   + A  +F+++   + +  N+++S   ++ L    + L   + 
Sbjct: 320 DVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLL 379

Query: 180 ALGLDYDHFTLSALL-----RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
             GL  DHFTL+++      +AC  L   + G+Q+HA+ I+      +D+ + S +++MY
Sbjct: 380 HEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIK--AGFDSDLHVNSGILDMY 437

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG +  A  VFN            D V WTSM+     NG   + +++Y  M  +   
Sbjct: 438 IKCGDMVNAGIVFNYIS-------APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVM 490

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE--PGPEHYSCLVDLLCRAGELDKA 352
           PDE  F T+I A S    ++ G +    ++   KL+    P   + LVD+  + G ++ A
Sbjct: 491 PDEYTFATLIKASSCVTALEQGRQLHANVI---KLDCVSDPFVGTSLVDMYAKCGNIEDA 547

Query: 353 WKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           ++L  +M  R     ++++W A+L   A H   +  +    + K+  ++P  V    +LS
Sbjct: 548 YRLFKKMNVR-----NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 602



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 10/262 (3%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HAH  + G      +   S ++  Y  C    N G + N   +++  + + +  +IS 
Sbjct: 413 QIHAHAIKAGF--DSDLHVNSGILDMYIKCGDMVNAGIVFN---YISAPDDVAWTSMISG 467

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
              NG+   AL+ +  M    +  D Y   + + AS+ V     G+Q+ A+V K   +S 
Sbjct: 468 CVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSD 527

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            FVG++L+D+YAK   I DA  +F ++ V+N    NA+L G  +       + L + M +
Sbjct: 528 PFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKS 587

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYGKCG 238
            G++ D  +   +L AC   S A    + + Y+     + G +  ++  S L++  G+ G
Sbjct: 588 HGIEPDRVSFIGILSAC---SHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAG 644

Query: 239 LVTKALQVFNLAGHRLEGEINK 260
           LV +A +V      +    IN+
Sbjct: 645 LVQEADKVIETMPFKASASINR 666



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 134/300 (44%), Gaps = 34/300 (11%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L  + S  +   GK   A +  SG     F+ + L+ +Y+K   +  A  +FD  P ++ 
Sbjct: 84  LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDL 143

Query: 153 VCANALLSGYCEA-----KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           V  NA+L  Y  +          GL L RL+ A        TL+ +L+ C          
Sbjct: 144 VTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAE 203

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
            VH Y I+    L  DVF+  +L+ +Y KCG +  A  +F+    R       DVVLW  
Sbjct: 204 GVHGYAIK--IGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER-------DVVLWNM 254

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC--SHTGQVKLGIEYFEWMVH 325
           ML  Y + G  KE  +L+     +G +PDE +   +++ C  + T  ++LG +     VH
Sbjct: 255 MLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQ-----VH 309

Query: 326 DYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEM--LDRGHGSSSVSMWGALLSAC 379
              ++ G +      + LV++  + G    A ++ N+M  LD       +  W +++S+C
Sbjct: 310 GIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD-------LISWNSMISSC 362


>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
          Length = 826

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 228/443 (51%), Gaps = 21/443 (4%)

Query: 5   HQFETGLLLICLIIFQSRLMLPYTTCRH-KKNLGTLTNCLKFLNPRNPLPFNVVISDFCR 63
           H F    +   L    + L+  Y  CR+ K ++      L+    ++ + +  +I     
Sbjct: 212 HGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILE----KDLISWTTIIRGCIE 267

Query: 64  NGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFV 123
           N  P  A K FS M       D   +   + A     + +FG      + K+G L+ V +
Sbjct: 268 NDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLKNGLLAFVSI 327

Query: 124 GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL 183
           G+AL+ +YAK   +  A ++FD++  K+ +  +A++S +  ++     LE  + M +   
Sbjct: 328 GTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQMQSTDE 387

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
             +  T  +LL+AC+ + A E G  + A+   K   L N  F+ S+LI++Y K G + + 
Sbjct: 388 RPNEITFVSLLQACSLIGAQELGESIQAHAT-KAGYLSN-AFLSSALIDLYCKFGRINQG 445

Query: 244 LQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
             +FN        EI  KD+V W+SM+  YG NG   E ++ +  ML  G KP+EV F++
Sbjct: 446 RAIFN--------EIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFIS 497

Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
           V+SACSH G    G   F  M   Y + P   HY+C+VDL+ R G ++ A + +N+M   
Sbjct: 498 VLSACSHCGLEHEGWSCFSSMEQKYGIIPKLPHYACMVDLISRRGNIEGALQFVNKM--- 554

Query: 363 GHGSSSVSMWGALLSACHDC-GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
                   +WGALL+ C    G  E+ +L A++ + LDP N   YV+LSNLYA+   W +
Sbjct: 555 -PMEPDKRIWGALLAGCRSTHGSIEIAELVAERLIGLDPQNTSYYVILSNLYAEQGRWGD 613

Query: 422 IGQLRELMKEKGLKKDVGCSWIE 444
           + +LR+L+ EKGLKK++G S IE
Sbjct: 614 VERLRKLVDEKGLKKEMGYSMIE 636



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 157/359 (43%), Gaps = 17/359 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           ++ ++S   ++G    A + F  M   G+  +  ++ S L A  +V    FGK++     
Sbjct: 157 WSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEIHGFSI 216

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K  +     V ++L+D+YAK      + L+FD+I  K+ +    ++ G  E        +
Sbjct: 217 KKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILEKDLISWTTIIRGCIENDCPREAFK 276

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M       D   +  L+ A       +FG   H ++++    L   V + ++L++M
Sbjct: 277 AFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLKN--GLLAFVSIGTALLQM 334

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y K G +  A+ VF+           KD + W++M+ V+  + +    ++ ++ M     
Sbjct: 335 YAKFGELESAIIVFDQLN-------KKDYISWSAMISVHAHSRHPYNALETFKQMQSTDE 387

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
           +P+E+ FV+++ ACS  G  +LG E  +               S L+DL C+ G +++  
Sbjct: 388 RPNEITFVSLLQACSLIGAQELG-ESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQGR 446

Query: 354 KLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            + NE+      +  +  W ++++    + CG   L   +   A  + P+ V    +LS
Sbjct: 447 AIFNEI-----PTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFISVLS 500



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 134/273 (49%), Gaps = 30/273 (10%)

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAEL---MFDEIPVKNSVCANALLSGYCEAKLW 168
           V K G+ S V V +ALI  Y+     +D  +   +F++ P+K+ V  +A++S   ++  +
Sbjct: 115 VIKLGFESEVSVATALIGFYSD----YDMGIVWKIFNQTPIKDLVLWSAMVSACVKSGQY 170

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
               E+ R M   G++ +H ++ ++L ACA + A  FG+++H + I+K  +   +V   +
Sbjct: 171 GEAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNV--HN 228

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++MY KC     ++ VF+         + KD++ WT+++     N   +E  K +  M
Sbjct: 229 SLVDMYAKCRNFKASMLVFDQI-------LEKDLISWTTIIRGCIENDCPREAFKAFSRM 281

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLC 344
             +    DE     +I A     + K GI +     H + L+ G   +    + L+ +  
Sbjct: 282 QFSCFGADETIVQDLIVAIIQADEHKFGIAF-----HGFLLKNGLLAFVSIGTALLQMYA 336

Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           + GEL+ A  + +++  + + S     W A++S
Sbjct: 337 KFGELESAIIVFDQLNKKDYIS-----WSAMIS 364



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 107/219 (48%), Gaps = 30/219 (13%)

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L ++M       +H T+ +++RA +GL   +  R +   +I+      ++V + ++LI  
Sbjct: 76  LFKMMLMTEQRPNHVTVLSVIRAISGLGLEDMMRVICGSVIK--LGFESEVSVATALIGF 133

Query: 234 YGK--CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           Y     G+V K   +FN           KD+VLW++M+    ++G + E  +++ AM  +
Sbjct: 134 YSDYDMGIVWK---IFNQTPI-------KDLVLWSAMVSACVKSGQYGEAFEIFRAMQYD 183

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE----PGPEHYSCLVDLLCRAG 347
           G +P+ V+ V+++ AC++ G +  G E     +H + ++    P    ++ LVD+  +  
Sbjct: 184 GVEPNHVSIVSILPACANVGALLFGKE-----IHGFSIKKMFHPLTNVHNSLVDMYAKCR 238

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGK 384
               +  + +++L++      +  W  ++  C  +DC +
Sbjct: 239 NFKASMLVFDQILEK-----DLISWTTIIRGCIENDCPR 272



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 23/195 (11%)

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            +VF+++S   +Y +    T A     +  H   GE   +V+ WTS +    +    +  
Sbjct: 18  RNVFIRNSAYSLYYRSMFNTYAYYEEPVEFH---GE-KDNVISWTSKISSLVKQNQSELA 73

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSCLV 340
           + L++ MLM   +P+ V  ++VI A S      LG+E    ++    ++ G E   S   
Sbjct: 74  VGLFKMMLMTEQRPNHVTVLSVIRAIS-----GLGLEDMMRVICGSVIKLGFESEVSVAT 128

Query: 341 DLLCRAGELDKA--WKLINEMLDRGHGSSSVSMWGALLSACHDCGK----FELGKLAAQK 394
            L+    + D    WK+ N+   +      + +W A++SAC   G+    FE+ +     
Sbjct: 129 ALIGFYSDYDMGIVWKIFNQTPIK-----DLVLWSAMVSACVKSGQYGEAFEIFRAMQYD 183

Query: 395 ALELDPHNVGIYVML 409
            +E  P++V I  +L
Sbjct: 184 GVE--PNHVSIVSIL 196


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 144/452 (31%), Positives = 231/452 (51%), Gaps = 30/452 (6%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKF---LNPRNPLPFNVV 57
            +H    +TG        FQ  + +          LG L + LK    L  ++ + +  +
Sbjct: 494 QIHTQVLKTG--------FQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAM 545

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+ + ++     AL  F  M   GI  D     S+++A   ++    G+Q+ A    SG+
Sbjct: 546 IAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGY 605

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
              + VG+AL+ LYA+   + DA   FD+I  K+++  N+L+SG+ ++      L L   
Sbjct: 606 SDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQ 665

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS--LIEMYG 235
           M   G + + FT    + A A ++  + G+Q+HA +I+     G+D   + S  LI +Y 
Sbjct: 666 MSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKT----GHDSETEVSNVLITLYA 721

Query: 236 KCGLVTKA-LQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
           KCG +  A  Q F +          K+ + W +ML  Y ++G+  + + L+E M   G  
Sbjct: 722 KCGNIDDAERQFFEMP--------EKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVL 773

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           P+ V FV V+SACSH G V  GI+YF+ M   + L P PEHY+C+VDLL R+G L +A +
Sbjct: 774 PNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARR 833

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
            + EM  +        +   LLSAC      ++G+ AA   LEL+P +   YV+LSN+YA
Sbjct: 834 FVEEMPIQ----PDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYA 889

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
               W    + R++MK++G+KK+ G SWIEV 
Sbjct: 890 VTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVN 921



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 170/344 (49%), Gaps = 23/344 (6%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  R+ + +  ++S   ++G    A+  F  MH  G++   Y   S L+A T V+  + G
Sbjct: 231 LQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVG 290

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +Q+   V K G+    +V +AL+ LY++L     AE +F+ +  ++ V  N+L+SG  + 
Sbjct: 291 EQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQ 350

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 LEL + M    L  D  T+++LL AC+ + A   G+Q H+Y I+    + +D+ 
Sbjct: 351 GYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIK--AGMSSDII 408

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           ++ +L+++Y KC  +  A + F      L  E  ++VVLW  ML  YG      E  K++
Sbjct: 409 LEGALLDLYVKCSDIKTAHEFF------LSTE-TENVVLWNVMLVAYGLLDNLNESFKIF 461

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVD 341
             M M G +P++  + +++  CS    V LG +     +H   L+ G +      S L+D
Sbjct: 462 TQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQ-----IHTQVLKTGFQFNVYVSSVLID 516

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
           +  + G+LD A K+   + ++      V  W A+++      KF
Sbjct: 517 MYAKLGKLDHALKIFRRLKEK-----DVVSWTAMIAGYAQHEKF 555



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 172/348 (49%), Gaps = 27/348 (7%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           + K F+ M + GI  + +   S L   +S++    G+Q+   V K+G+  +V+V S LID
Sbjct: 457 SFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLID 516

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +YAKL  +  A  +F  +  K+ V   A+++GY + + +A  L L + M   G+  D+  
Sbjct: 517 MYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIG 576

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVF 247
            ++ + ACAG+ A   G+Q+HA    + C  G  +D+ + ++L+ +Y +CG V  A   F
Sbjct: 577 FASAISACAGIQALNQGQQIHA----QACVSGYSDDLSVGNALVSLYARCGKVRDAYFAF 632

Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
           +          +KD + W S++  + ++G+ +E + L+  M   G + +   F   +SA 
Sbjct: 633 DKI-------FSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAA 685

Query: 308 SHTGQVKLGIEYFEWMV---HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           ++   VKLG +    ++   HD + E      + L+ L  + G +D A +   EM ++  
Sbjct: 686 ANVANVKLGKQIHAMIIKTGHDSETEVS----NVLITLYAKCGNIDDAERQFFEMPEKNE 741

Query: 365 GSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            S     W A+L+  + H  G   L      K L + P++V    +LS
Sbjct: 742 IS-----WNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLS 784



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 167/360 (46%), Gaps = 41/360 (11%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +++ A     G+ +S+FV + LIDLY K   ++ A+ +FD +  ++SV   A+LSG  ++
Sbjct: 190 EKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQS 249

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 + L   M   G+    +  S++L AC  +   + G Q+H  ++++  +L  + +
Sbjct: 250 GCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSL--ETY 307

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L+ +Y + G    A QVFN         + +D V + S++    + GY  + ++L+
Sbjct: 308 VCNALVTLYSRLGNFIPAEQVFN-------AMLQRDEVSYNSLISGLSQQGYSDKALELF 360

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV--------------------- 324
           + M ++  KPD V   +++SACS  G + +G ++  + +                     
Sbjct: 361 KKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKC 420

Query: 325 ------HDYKLEPGPEHYSCLVDLLCRAGELD---KAWKLINEMLDRGHGSSSVSMWGAL 375
                 H++ L    E+      +L   G LD   +++K+  +M   G   +  + + ++
Sbjct: 421 SDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFT-YPSI 479

Query: 376 LSACHDCGKFELGKLAAQKALELD-PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           L  C      +LG+    + L+     NV +  +L ++YAK    D   ++   +KEK +
Sbjct: 480 LRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDV 539



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 133/299 (44%), Gaps = 31/299 (10%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G ++   + K G+ + V +   L+DLY     +  A  +FDE+PV+   C N +L  +  
Sbjct: 87  GWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVA 146

Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGND 223
            K+    L L R M    +  D  T + +LR C G         ++HA  I       N 
Sbjct: 147 GKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITH--GYENS 204

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           +F+ + LI++Y K G +  A +VF       +G   +D V W +ML    ++G  +E + 
Sbjct: 205 LFVCNPLIDLYFKNGFLNSAKKVF-------DGLQKRDSVSWVAMLSGLSQSGCEEEAVL 257

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG--PEHYSC--L 339
           L+  M  +G  P    F +V+SAC+     K+G +     +H   L+ G   E Y C  L
Sbjct: 258 LFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQ-----LHGLVLKQGFSLETYVCNAL 312

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           V L  R G    A ++ N ML R   S     + +L+S     G        + KALEL
Sbjct: 313 VTLYSRLGNFIPAEQVFNAMLQRDEVS-----YNSLISGLSQQG-------YSDKALEL 359


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/330 (36%), Positives = 183/330 (55%), Gaps = 13/330 (3%)

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
           + SV   +A+I  Y K   +  AE +F E+ ++  V  NA+++GY E      GL L R 
Sbjct: 194 MRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRT 253

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
           M   G+  +  +L+++L  C+ LSA + G+QVH  + +  C L +D    +SL+ MY KC
Sbjct: 254 MLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCK--CPLSSDTTAGTSLVSMYSKC 311

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
           G +  A ++F            KDVV W +M+  Y ++G  K+ ++L++ M   G KPD 
Sbjct: 312 GDLKDAWELFIQIP-------RKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDW 364

Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLIN 357
           + FV V+ AC+H G V LG++YF  M  D+ +E  PEHY+C+VDLL RAG+L +A  LI 
Sbjct: 365 ITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIK 424

Query: 358 EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFC 417
            M  + H     +++G LL AC       L + AA+  LELDP     YV L+N+YA   
Sbjct: 425 SMPFKPHP----AIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQN 480

Query: 418 MWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            WD +  +R  MK+  + K  G SWIE+  
Sbjct: 481 RWDHVASIRRSMKDNNVVKIPGYSWIEINS 510



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 1/199 (0%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R  + +N +I+ +  NG     L+ F  M   G+  +  +L S L   +++   + GKQV
Sbjct: 226 RTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQV 285

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V K    S    G++L+ +Y+K   + DA  +F +IP K+ VC NA++SGY +    
Sbjct: 286 HQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAG 345

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M   GL  D  T  A+L AC      + G Q    M R+   +       +
Sbjct: 346 KKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTM-RRDFGIETKPEHYA 404

Query: 229 SLIEMYGKCGLVTKALQVF 247
            ++++ G+ G +++A+ + 
Sbjct: 405 CMVDLLGRAGKLSEAVDLI 423



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 154/362 (42%), Gaps = 42/362 (11%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARF- 104
            N  N +  N +I+ + R G    A++ F  M V      +    +S+ A+ + K   F 
Sbjct: 36  FNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKV-----KSTVTWNSILAAFAKKPGHFE 90

Query: 105 -GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
             +Q+   + +   +S     + ++  +   L +HDA   FD +P+K+    N ++S   
Sbjct: 91  YARQLFEKIPQPNTVSY----NIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALA 146

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLR---ACAGLSAAEFGRQVHAYMIRKCCNL 220
           +  L      L   MP    + +  + SA++    AC  L AA      +A  +R     
Sbjct: 147 QVGLMGEARRLFSAMP----EKNCVSWSAMVSGYVACGDLDAAV--ECFYAAPMR----- 195

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
              V   +++I  Y K G V  A ++F     R        +V W +M+  Y  NG  ++
Sbjct: 196 --SVITWTAMITGYMKFGRVELAERLFQEMSMR-------TLVTWNAMIAGYVENGRAED 246

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            ++L+  ML  G KP+ ++  +V+  CS+   ++LG +  + +V    L       + LV
Sbjct: 247 GLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQ-LVCKCPLSSDTTAGTSLV 305

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALEL 398
            +  + G+L  AW+L  ++  +      V  W A++S  A H  GK  L      K   L
Sbjct: 306 SMYSKCGDLKDAWELFIQIPRK-----DVVCWNAMISGYAQHGAGKKALRLFDEMKKEGL 360

Query: 399 DP 400
            P
Sbjct: 361 KP 362


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 221/431 (51%), Gaps = 43/431 (9%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +N  NP  +  +I  +   G    +   ++ M   G+   ++   +   A  +  +   G
Sbjct: 102 VNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG 161

Query: 106 KQVQAH-VTKSGWLSSVFVGSALIDLY-------------------------------AK 133
           KQV A  +   G+ S ++VG+++IDLY                               AK
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAK 221

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A  +FD++P+K+ V   A+++GY +       LE  + M  +G++ D  TL+ +
Sbjct: 222 YGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           + ACA L A +    +     R       +V + S+LI+MY KCG   +A +VF +   R
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  +V  ++SM+  Y  +G     ++L+  ML    +P++V F+ ++SACSH G V
Sbjct: 342 -------NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLV 394

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G + F  M   + + P P+HY+C+VDLL RAG L++A  L+  M    +G     +WG
Sbjct: 395 EQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGG----VWG 450

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL AC   G  ++ ++AA +  +L+P+ +G Y++LSN+YA    W+E+ +LR++++EKG
Sbjct: 451 ALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKG 510

Query: 434 LKKDVGCSWIE 444
            KK+ GCSW E
Sbjct: 511 FKKNPGCSWFE 521



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 136/300 (45%), Gaps = 38/300 (12%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE--LMFDEIPVKNSVCANALLSGYC 163
           KQV AH+ ++G     +V + LI +  K+ +   +   L+F ++   N     A++ GY 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
              L +        M   G+    FT SAL +AC      + G+QVHA  I       +D
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTIL-IGGFASD 177

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHR-------------LEGEIN----------- 259
           +++ +S+I++Y KCG +  A +VF+    R               G++            
Sbjct: 178 LYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPL 237

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           KD+V WT+M+  Y +NG  KE ++ ++ M   G + DEV    VISAC+  G VK    +
Sbjct: 238 KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVK----H 293

Query: 320 FEWMVHDYKLEP--GPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
             W + D       GP       S L+D+  + G  D+A+K+   M +R   S S  + G
Sbjct: 294 ANW-IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILG 352


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 131/402 (32%), Positives = 214/402 (53%), Gaps = 14/402 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R    +N +I+ +   G    AL  F  M   G   +   + S  +      D   G
Sbjct: 162 MERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTG 221

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K+V+  + +   L +V V +AL+++Y K   I DA   FD +  ++ V  + +++GY + 
Sbjct: 222 KRVRDLIGEDD-LQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQN 280

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 LEL   M A     +  TL  ++ ACA L + E   Q+  Y   +   L +  +
Sbjct: 281 GRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTS--Y 338

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+LI+MY +CG V +A  VF+    R+E    K V+ W SM+     NG+ ++ I LY
Sbjct: 339 LGSALIDMYTRCGHVGRARSVFS----RME---QKGVITWNSMIRGLAMNGFAEDAISLY 391

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M  NG +P+E+ FV +++AC+H G V  G+ +FE M  ++ + P  EH +C+VDLLC+
Sbjct: 392 EKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLCK 451

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           +G L +A+K I +M        +  +W  LLS+C      EL KLA++K L ++P N  I
Sbjct: 452 SGGLWEAYKFICDM----EVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAMEPDNSSI 507

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           YV+LSN+YA   +W +  ++R+LM+ K ++K    SWI++ G
Sbjct: 508 YVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDG 549



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 176/395 (44%), Gaps = 69/395 (17%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPF--NVVISDFCRNGSPLYALKTFSFMH 78
           SR   P TT R  +NL           PR P P   +  +S   R  S    L+TFS MH
Sbjct: 11  SRRAPPATTSRAARNLFDAV-------PR-PAPALCSTFLSSLSRASSHHDLLQTFSSMH 62

Query: 79  VHGIFLDT------YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
             G ++ +      +  C+ LTAS+       G+QV  H    G L  VFV +AL+D YA
Sbjct: 63  RKGAYVPSGCVPLVFKSCA-LTASSCQ-----GRQVHCHALVRGLLGDVFVLTALVDFYA 116

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEA-------KLWAG--------------- 170
           K   +  A   FDE+PVK+ +  N L++GY +A       +L+ G               
Sbjct: 117 KNGDMESAVSAFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIAC 176

Query: 171 ---------GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
                     L L   M + G   +  T++++   CA     + G++V   +     +L 
Sbjct: 177 YAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGED--DLQ 234

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           N V + ++L+EMY KC  +  A + F+    R       DVV W++M+  Y +NG   E 
Sbjct: 235 N-VIVHTALMEMYVKCRAIDDARREFDRMSQR-------DVVAWSTMIAGYAQNGRPLES 286

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           ++L+E M     +P+EV  V VISAC+  G  +L +E       + +L       S L+D
Sbjct: 287 LELFERMKATDCRPNEVTLVGVISACAQLGSDEL-VEQIGNYAENQRLPLTSYLGSALID 345

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +  R G + +A  + + M  +G     V  W +++
Sbjct: 346 MYTRCGHVGRARSVFSRMEQKG-----VITWNSMI 375



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 124/297 (41%), Gaps = 35/297 (11%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD +P       +  LS    A      L+    M   G       +  + ++CA 
Sbjct: 23  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 82

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN----------- 248
            +++  GRQVH + + +   L  DVF+ ++L++ Y K G +  A+  F+           
Sbjct: 83  TASSCQGRQVHCHALVR--GLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPIN 140

Query: 249 --LAGHRLEGEINKDVVL-----------WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
             + G+   G+++K   L           W SM+  Y   G F+E + L++ ML  G +P
Sbjct: 141 CLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARP 200

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           + +   +V S C+ +G +  G    + +  D  L+    H + L+++  +   +D A + 
Sbjct: 201 NAITITSVFSICAKSGDLDTGKRVRDLIGED-DLQNVIVH-TALMEMYVKCRAIDDARRE 258

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKF--ELGKLAAQKALELDPHNVGIYVMLS 410
            + M  R      V  W  +++     G+    L      KA +  P+ V +  ++S
Sbjct: 259 FDRMSQR-----DVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVIS 310



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 82/202 (40%), Gaps = 10/202 (4%)

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           ++  C L   + Q   +  H L   +  DV + T+++  Y +NG  +  +  ++ M +  
Sbjct: 76  VFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVK- 134

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
              D +    +I+  S  G V      F+ M            ++ ++      GE  +A
Sbjct: 135 ---DPIPINCLITGYSKAGDVDKARRLFDGMERRTSAS-----WNSMIACYAHGGEFREA 186

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
             L + ML  G   +++++  ++ S C   G  + GK       E D  NV ++  L  +
Sbjct: 187 LALFDRMLSEGARPNAITI-TSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEM 245

Query: 413 YAKFCMWDEIGQLRELMKEKGL 434
           Y K    D+  +  + M ++ +
Sbjct: 246 YVKCRAIDDARREFDRMSQRDV 267


>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
 gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
          Length = 552

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 205/364 (56%), Gaps = 15/364 (4%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           +T+ L  +L A  +V     G+Q+ A   + G  +S +V + L++LYAK   +  A  +F
Sbjct: 125 NTFTLAFALKACAAVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVF 184

Query: 145 DEI-PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
           D + P K+ V  +A+++GY    +    L L R M A+G++ D  T+  ++ ACA   A 
Sbjct: 185 DGMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGAL 244

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
           + G+ VHAY+ RK   +  D+ + ++LI+MY KCGL+ +A  VF+         + KD  
Sbjct: 245 DLGKWVHAYIDRKGITV--DLELSTALIDMYAKCGLIERARGVFD-------AMVEKDTK 295

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
            W++M+  +  +G  ++ + L+  ML    +P+ V F+ V+SAC+H+G V  G  Y+  M
Sbjct: 296 AWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVDDGRRYWSIM 355

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
             +  ++P  E+Y C++DLLCR+G LD A+  + +M      S +  +W  LL AC    
Sbjct: 356 -QNLGIKPSMENYGCMIDLLCRSGLLDDAYSFVIDM----PISPNSIIWRTLLVACKSSN 410

Query: 384 KFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           + ++ + A+++ LEL+PHN   YV+LSNL A    WD +  LR+ MK+  +    GCS I
Sbjct: 411 RIDIAESASKRLLELEPHNPENYVLLSNLCASNSQWDRVSYLRKKMKDSNVTAVAGCSSI 470

Query: 444 EVTG 447
           E+ G
Sbjct: 471 EING 474



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 133/276 (48%), Gaps = 26/276 (9%)

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELV-RLMPALGLDYDH-FTLSALLRACAGL 200
           +FD+IP   + C N+L+     A         V RLM   G    + FTL+  L+ACA +
Sbjct: 80  LFDQIPDPTAFCYNSLIRALPAAGAAPAPALAVYRLMLRAGSPRPNTFTLAFALKACAAV 139

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
            A   GRQ+HA  +R+   L    ++Q+ L+ +Y KC  V  A  VF+          +K
Sbjct: 140 PAPGEGRQLHAQALRQ--GLEASAYVQTGLLNLYAKCEQVALARTVFDGMAP------DK 191

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
            +V W++M+  Y R G   E + L+  M   G +PDEV  V VISAC+  G + LG    
Sbjct: 192 SLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLG---- 247

Query: 321 EWMVHDYKLEPGP----EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
           +W VH Y    G     E  + L+D+  + G +++A  + + M+++         W A++
Sbjct: 248 KW-VHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEK-----DTKAWSAMI 301

Query: 377 S--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
              A H   +  LG  +    L++ P+NV    +LS
Sbjct: 302 VGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLS 337



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 117/272 (43%), Gaps = 18/272 (6%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPL-PFNVVIS 59
            +HA     GL     +  Q+ L+  Y  C   + +         + P   L  ++ +I+
Sbjct: 147 QLHAQALRQGLEASAYV--QTGLLNLYAKC---EQVALARTVFDGMAPDKSLVAWSAMIN 201

Query: 60  DFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS 119
            + R G    AL  F  M   G+  D   +   ++A         GK V A++ + G   
Sbjct: 202 GYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLGKWVHAYIDRKGITV 261

Query: 120 SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP 179
            + + +ALID+YAK  LI  A  +FD +  K++   +A++ G+    L    L L   M 
Sbjct: 262 DLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRML 321

Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS--SLIEMYGKC 237
            L +  ++ T   +L ACA     + GR+  + M     NLG    M++   +I++  + 
Sbjct: 322 ELKVRPNNVTFIGVLSACAHSGLVDDGRRYWSIM----QNLGIKPSMENYGCMIDLLCRS 377

Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           GL+  A          ++  I+ + ++W ++L
Sbjct: 378 GLLDDAYSFV------IDMPISPNSIIWRTLL 403


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 223/448 (49%), Gaps = 22/448 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           +VH+  F+ GL     I     L++ Y  C     +G        +  R+ + +N +IS 
Sbjct: 153 SVHSSLFKVGLERDVHI--NHSLIMMYAKC---GQVGYARKLFDEITERDTVSWNSMISG 207

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           +   G    A+  F  M   G   D   L S L A + + D R G+ ++          S
Sbjct: 208 YSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS 267

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            F+GS LI +Y K   +  A  +F+++  K+ V   A+++ Y +    +   +L   M  
Sbjct: 268 TFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEK 327

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  D  TLS +L AC  + A E G+Q+  +      +L +++++ + L++MYGKCG V
Sbjct: 328 TGVSPDAGTLSTVLSACGSVGALELGKQIETHASE--LSLQHNIYVATGLVDMYGKCGRV 385

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +AL+VF       E    K+   W +M+  Y   G+ KE + L++ M      P ++ F
Sbjct: 386 EEALRVF-------EAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITF 435

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + V+SAC H G V  G  YF  M   + L P  EHY+ ++DLL RAG LD+AW    E +
Sbjct: 436 IGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAW----EFM 491

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL-DPHNVGIYVMLSNLYAKFCMW 419
           +R  G     M  A+L ACH      + + A +  +E+ +  N G YV+ SN+ A   MW
Sbjct: 492 ERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMW 551

Query: 420 DEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           DE  ++R LM+++G+ K  GCSWIE+ G
Sbjct: 552 DESAKMRALMRDRGVVKTPGCSWIEIEG 579



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 149/309 (48%), Gaps = 15/309 (4%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           AL  +  M   G+  D +       A   +++   G+ V + + K G    V +  +LI 
Sbjct: 116 ALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIM 175

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +YAK   +  A  +FDEI  +++V  N+++SGY EA      ++L R M   G + D  T
Sbjct: 176 MYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERT 235

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L ++L AC+ L     GR +    I K   +G   F+ S LI MYGKCG +  A +VFN 
Sbjct: 236 LVSMLGACSHLGDLRTGRLLEEMAITK--KIGLSTFLGSKLISMYGKCGDLDSARRVFNQ 293

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                   I KD V WT+M+ VY +NG   E  KL+  M   G  PD     TV+SAC  
Sbjct: 294 M-------IKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGS 346

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
            G ++LG +  E    +  L+      + LVD+  + G +++A ++   M  +   +   
Sbjct: 347 VGALELGKQ-IETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEAT--- 402

Query: 370 SMWGALLSA 378
             W A+++A
Sbjct: 403 --WNAMITA 409



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 153/382 (40%), Gaps = 64/382 (16%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           S+L+  Y  C      G L +  +  N    ++ + +  +I+ + +NG    A K F  M
Sbjct: 272 SKLISMYGKC------GDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM 325

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
              G+  D   L + L+A  SV     GKQ++ H ++     +++V + L+D+Y K   +
Sbjct: 326 EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 385

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
            +A  +F+ +PVKN    NA+++ Y          E + L   + +     T   +L AC
Sbjct: 386 EEALRVFEAMPVKNEATWNAMITAYAHQ---GHAKEALLLFDRMSVPPSDITFIGVLSAC 442

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
                      VHA ++ + C   +         EM    GLV K               
Sbjct: 443 -----------VHAGLVHQGCRYFH---------EMSSMFGLVPK--------------- 467

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
               +  +T+++ +  R G   E    +E M     KPDE+    ++ AC     V +  
Sbjct: 468 ----IEHYTNIIDLLSRAGMLDEA---WEFMERFPGKPDEIMLAAILGACHKRKDVAIR- 519

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG----HGSSSVSMWG 373
           E    M+ + K      +Y    ++L      D++ K+   M DRG     G S + + G
Sbjct: 520 EKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEG 579

Query: 374 ALL-----SACHDCGKFELGKL 390
            L+     S    CG+ + G L
Sbjct: 580 ELMEFLAGSDYLQCGREDSGSL 601


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 225/451 (49%), Gaps = 25/451 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCL---KFLNPRNPLPFNVV 57
            VHA   + G + +  +   + L+  Y  C      G  T+ L     ++  N + +N +
Sbjct: 122 QVHAQSLKLGCVSVSFV--SNALISMYMKC------GLCTDALLVHNVMSEPNAVSYNAL 173

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+ F  N  P   ++ F  M   G   D +     L   TS  D   G Q+   + K   
Sbjct: 174 IAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNL 233

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR- 176
             S F+G+ +I +Y+K  LI +AE +F  I  K+ +  N L++  C  K     L + R 
Sbjct: 234 EDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRD 293

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
           ++    +  D FT + +L ACAGL++   G+Q+H ++IR       DV + ++L+ MY K
Sbjct: 294 MLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRT--RQYQDVGVSNALVNMYAK 351

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG +  +  VF     R       ++V W +++  +G +G     ++ +E M   G  PD
Sbjct: 352 CGSIKNSYDVFRRTSDR-------NLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPD 404

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
            V FV +++AC+H G V+ G  YF  M   Y + P  EH+SCL+DLL RAG L +A + +
Sbjct: 405 SVTFVGLLTACNHAGLVEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYM 464

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
            E L  GH      + G+LLSAC   G   +G+  A + L+L P     YV+LSNLYA  
Sbjct: 465 -EKLPFGHDP---IILGSLLSACRLHGDMVIGEHLATQLLKLQPVTTSPYVLLSNLYASD 520

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            MW  + +  +++K  GLKK+ G S I+V G
Sbjct: 521 EMWGGVAEAWKMLKYSGLKKEPGHSLIDVMG 551



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 191/413 (46%), Gaps = 26/413 (6%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           ++HA   +TG+L    II  + ++  Y+ C    N+         ++ RN + ++ +IS 
Sbjct: 24  SLHAAALKTGML--SDIIVSNHVINLYSKC---GNVIFARRMFDEMSDRNLVSWSAIISG 78

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           + + G PL AL  FS M    I  + Y   S ++A  S+     G QV A   K G +S 
Sbjct: 79  YDQTGQPLLALNLFSQMR---IVPNEYVFASVISACASLTALSQGLQVHAQSLKLGCVSV 135

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            FV +ALI +Y K  L  DA L+ + +   N+V  NAL++G+ E +    G+E  ++M  
Sbjct: 136 SFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQ 195

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G   D FT S LL  C        G Q+H  MI+   NL +  F+ + +I MY K  L+
Sbjct: 196 KGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIK--LNLEDSAFIGNVIITMYSKFNLI 253

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVA 299
            +A +VF L          KD++ W +++         +  ++++  ML +   KPD+  
Sbjct: 254 EEAEKVFGLIK-------EKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFT 306

Query: 300 FVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
           F  V++AC+    ++ G +    ++   + +      + LV++  + G +  ++ +    
Sbjct: 307 FAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVS-NALVNMYAKCGSIKNSYDVFRRT 365

Query: 360 LDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            DR     ++  W  +++A   H  G   L      K + + P +V    +L+
Sbjct: 366 SDR-----NLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLT 413



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 157/362 (43%), Gaps = 49/362 (13%)

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
           A+ S L     +K    G  + A   K+G LS + V + +I+LY+K   +  A  MFDE+
Sbjct: 5   AIGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEM 64

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLEL---VRLMPALGLDYDHFTLSALLRACAGLSAAE 204
             +N V  +A++SGY +       L L   +R++P      + +  ++++ ACA L+A  
Sbjct: 65  SDRNLVSWSAIISGYDQTGQPLLALNLFSQMRIVP------NEYVFASVISACASLTALS 118

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G QVHA  ++  C   +  F+ ++LI MY KCGL T AL V N+           + V 
Sbjct: 119 QGLQVHAQSLKLGCV--SVSFVSNALISMYMKCGLCTDALLVHNVMS-------EPNAVS 169

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQV 313
           + +++  +  N   ++ I+ ++ M   G  PD   F  ++  C+           H   +
Sbjct: 170 YNALIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMI 229

Query: 314 KLGIEYFEW-------MVHDYKLEPGPEH------------YSCLVDLLCRAGELDKAWK 354
           KL +E   +       M   + L    E             ++ LV   C   + ++A +
Sbjct: 230 KLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALR 289

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH-NVGIYVMLSNLY 413
           +  +MLD          +  +L+AC        GK      +    + +VG+   L N+Y
Sbjct: 290 VFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMY 349

Query: 414 AK 415
           AK
Sbjct: 350 AK 351


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 125/391 (31%), Positives = 213/391 (54%), Gaps = 13/391 (3%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS + ++     A + F  +    +  + Y+L S L A T++    FGKQ+  H  K G
Sbjct: 335 MISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIG 394

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
             S +FVG+AL+D YAK   +  +  +F  +   N V  N ++ G+ ++ L    L +  
Sbjct: 395 HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFC 454

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M A  +     T S++LRACA  ++     Q+H  + +   N  ND  + +SLI+ Y K
Sbjct: 455 EMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFN--NDTVIGNSLIDTYAK 512

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG +  AL+VF    H +E    +D++ W +++  Y  +G   + ++L++ M  +  + +
Sbjct: 513 CGYIRDALKVFQ---HLME----RDIISWNAIISGYALHGQAADALELFDRMNKSNVESN 565

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
           ++ FV ++S CS TG V  G+  F+ M  D+ ++P  EHY+C+V LL RAG L+ A + I
Sbjct: 566 DITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFI 625

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
            ++      + S  +W ALLS+C       LG+ +A+K LE++P +   YV+LSN+YA  
Sbjct: 626 GDI----PSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAA 681

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
              D++  LR+ M+  G++K  G SW+E+ G
Sbjct: 682 GSLDQVALLRKSMRNIGVRKVPGLSWVEIKG 712



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 166/336 (49%), Gaps = 29/336 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  ++S +  N  P  A + FS M V G   + +AL S L A+  +     GK +
Sbjct: 226 KDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGI 285

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K+   +   VG AL+D+YAK   I DA L F+ IP  + +  + ++S Y ++   
Sbjct: 286 HGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQN 345

Query: 169 AGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               EL +RLM +  L  + ++LS++L+AC  +   +FG+Q+H + I+      +D+F+ 
Sbjct: 346 EQAFELFLRLMRSSVLP-NEYSLSSVLQACTNMVQLDFGKQIHNHAIK--IGHESDLFVG 402

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L++ Y KC  +  +L++F  +  R   E++     W +++  + ++G  +E + ++  
Sbjct: 403 NALMDFYAKCNDMDSSLKIF--SSLRDANEVS-----WNTIVVGFSQSGLGEEALSVFCE 455

Query: 288 MLMNGTKPDEVAFVTVISACS------HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           M        +V + +V+ AC+      H GQ+   IE   +  +D  +       + L+D
Sbjct: 456 MQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFN-NDTVIG------NSLID 508

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
              + G +  A K+   +++R      +  W A++S
Sbjct: 509 TYAKCGYIRDALKVFQHLMER-----DIISWNAIIS 539



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 19/282 (6%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS--SVFVGSALIDLYAKLLLIHDAE 141
           +D++A    L    +  DAR G+ V  HV + G +    +F  + L+++Y KL  +  A 
Sbjct: 57  VDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASAR 116

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            +FD +P +N V    L+  + +   +     L R +   G + + F L+ +L+    + 
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 202 AAEFGRQVHAYMIRKCC-NLGND--VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
           AA     VH+     C   LG+D   F+ S LI+ Y  C LV+ A  VFN       G +
Sbjct: 177 AAGLAGGVHS-----CAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFN-------GIV 224

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            KD V+WT+M+  Y  N   +   +++  M ++G KP+  A  +V+ A      V LG  
Sbjct: 225 RKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKG 284

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
                +     +  P     L+D+  + G++  A +L  EM+
Sbjct: 285 IHGCAIKTLN-DTEPHVGGALLDMYAKCGDIKDA-RLAFEMI 324



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 153/333 (45%), Gaps = 21/333 (6%)

Query: 36  LGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           LG L +  +  +    RN + F  ++    + G    A   F  +   G  ++ + L + 
Sbjct: 109 LGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTM 168

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L  + ++  A     V +   K G   + FVGS LID Y+   L+ DAE +F+ I  K++
Sbjct: 169 LKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDA 228

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V   A++S Y E         +   M   G   + F L+++L+A   L +   G+ +H  
Sbjct: 229 VVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGC 288

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            I+   +   +  +  +L++MY KCG +  A   F +  +        DV+L + M+  Y
Sbjct: 289 AIKTLND--TEPHVGGALLDMYAKCGDIKDARLAFEMIPY-------DDVILLSFMISRY 339

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            ++   ++  +L+  ++ +   P+E +  +V+ AC++  Q+  G +     +H++ ++ G
Sbjct: 340 AQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQ-----IHNHAIKIG 394

Query: 333 PEHY----SCLVDLLCRAGELDKAWKLINEMLD 361
            E      + L+D   +  ++D + K+ + + D
Sbjct: 395 HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD 427



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 125/319 (39%), Gaps = 46/319 (14%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L   N + +N ++  F ++G    AL  F  M    +        S L A  S    R  
Sbjct: 425 LRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHA 484

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
            Q+   + KS + +   +G++LID YAK   I DA  +F  +  ++ +  NA++SGY   
Sbjct: 485 GQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALH 544

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
              A  LEL   M    ++ +  T  ALL  C+                           
Sbjct: 545 GQAADALELFDRMNKSNVESNDITFVALLSVCSS-------------------------- 578

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
                       GLV   L +F+    R++  I   +  +T ++ + GR G   + ++  
Sbjct: 579 -----------TGLVNHGLSLFD--SMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFI 625

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSCLVDLLC 344
             +    + P  + +  ++S+C     V LG    E ++   ++EP  E  Y  L ++  
Sbjct: 626 GDI---PSAPSAMVWRALLSSCIIHKNVALGRFSAEKIL---EIEPQDETTYVLLSNMYA 679

Query: 345 RAGELDKAWKLINEMLDRG 363
            AG LD+   L   M + G
Sbjct: 680 AAGSLDQVALLRKSMRNIG 698


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 186/327 (56%), Gaps = 13/327 (3%)

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           VFVG+AL+D+Y K    + A  +F E+PVKN V  N+++SG  +   +   L + R M  
Sbjct: 240 VFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQR 299

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
           LG+  D  TL A+L +CA L   E G+ VHAY+ R    +  D F+ ++L++MY KCG +
Sbjct: 300 LGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRN--QIRADGFIGNALVDMYAKCGSI 357

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +A  VF            KDV  +T+M+     +G   + + L+  M   G +PDEV F
Sbjct: 358 DQACWVFQAMNR-------KDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTF 410

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           V V++ACSH G V+ G +YFE M   Y L P  EHY C+VDLL RAG +++A + I  M 
Sbjct: 411 VGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNM- 469

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
                     + GALL AC   GK ELG+   +K  +++P   G YV++SN+Y+    W 
Sbjct: 470 ---PIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWR 526

Query: 421 EIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +  +LR+ MKE+ L+K  GCS IE+ G
Sbjct: 527 DALKLRKTMKERNLEKTPGCSSIELDG 553



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 133/332 (40%), Gaps = 50/332 (15%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N + +N +IS   + G    +L  F  M   G+  D   L + L +  ++     GK V
Sbjct: 269 KNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWV 328

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A++ ++   +  F+G+AL+D+YAK   I  A  +F  +  K+     A++ G       
Sbjct: 329 HAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQG 388

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L   MP +G++ D  T   +L AC+ +   E GR+    M        + ++   
Sbjct: 389 GKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDM--------STIYNLR 440

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
             +E YG                                M+ + GR G   E  +    M
Sbjct: 441 PQLEHYG-------------------------------CMVDLLGRAGLINEAEEFIRNM 469

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSCLVDLLCRAG 347
            +   +PD      ++ AC   G+V+LG    + +    K+EP  +  Y  + ++   A 
Sbjct: 470 PI---EPDAFVLGALLGACKIHGKVELGESVMKKI---EKIEPRKDGAYVLMSNIYSSAN 523

Query: 348 ELDKAWKLINEM----LDRGHGSSSVSMWGAL 375
               A KL   M    L++  G SS+ + G +
Sbjct: 524 RWRDALKLRKTMKERNLEKTPGCSSIELDGVI 555


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 142/429 (33%), Positives = 217/429 (50%), Gaps = 14/429 (3%)

Query: 20  QSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV 79
           +S L+  Y  CR    +            ++ + +  +IS +  N     AL+    M +
Sbjct: 171 ESSLITMYGRCRE---IEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDL 227

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW-LSSVFVGSALIDLYAKLLLIH 138
            GI L      S L A  S  D R G          G   SS  V   L++LY K   + 
Sbjct: 228 EGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVD 287

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
           DA  + D +PV+ SV   A+++ Y +    A  + L + M   G +    TL +++ +CA
Sbjct: 288 DARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCA 347

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            L     G+++HA  IR   +    + + +++I MYGKCG +  A +VF     R     
Sbjct: 348 VLGTLSLGKRIHAR-IRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLR----- 401

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGI 317
            + VV WT+M+  Y +NG  +E I+L++ ML++G T+P+ V F++V+ ACSH GQ++   
Sbjct: 402 TRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAW 461

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
           E+F  M  D+ + P  +HY CLVDLL RAG L +A KL   +L      + V  W A LS
Sbjct: 462 EHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKL---LLRHKDFEADVVCWIAFLS 518

Query: 378 ACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           AC   G  E  + AA++  EL+P NV   V+LSN+YA      ++ ++R  MK  G+KK 
Sbjct: 519 ACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKF 578

Query: 438 VGCSWIEVT 446
            G SWIE+ 
Sbjct: 579 AGRSWIEIN 587



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 129/270 (47%), Gaps = 14/270 (5%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N   +N++++ + +NG P  A   F +M   G+  +   L ++L A T+ ++   G+++ 
Sbjct: 97  NAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLN 156

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
             +          V S+LI +Y +   I +AE  FD  P K+ VC  A++S Y      +
Sbjct: 157 ELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTS 216

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND---VFM 226
             LELVR M   G+     T  +LL ACA       G   H    ++   +G D     +
Sbjct: 217 RALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFH----QRAAAIGLDRSSTVV 272

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
             +L+ +YGKCG V  A +V +    R         V WT+M+  Y +NG   E I L++
Sbjct: 273 AGTLVNLYGKCGRVDDARRVLDAMPVRTS-------VSWTAMIAAYAQNGNAAEAINLFQ 325

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
            M + G +P ++  ++V+ +C+  G + LG
Sbjct: 326 CMDLEGAEPSDITLISVVDSCAVLGTLSLG 355



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 133/278 (47%), Gaps = 24/278 (8%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           +++ A +       + F+G+ L+D Y+K   +H A+L F  I + N+   N L++ Y + 
Sbjct: 52  RKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQN 111

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
               G   L   M + G+  +  TLS  L AC        GR+++  +  +   +  D  
Sbjct: 112 GHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEI--DSH 169

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           ++SSLI MYG+C  + +A + F+ +         KDVV WT+M+  Y  N      ++L 
Sbjct: 170 VESSLITMYGRCREIEEAERAFDRSPE-------KDVVCWTAMISAYAHNWRTSRALELV 222

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS-----CLV 340
             M + G K     +V+++ AC+ T  ++ G+ +     H      G +  S      LV
Sbjct: 223 RRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAF-----HQRAAAIGLDRSSTVVAGTLV 277

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           +L  + G +D A ++++ M  R    +SVS W A+++A
Sbjct: 278 NLYGKCGRVDDARRVLDAMPVR----TSVS-WTAMIAA 310


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 141/460 (30%), Positives = 237/460 (51%), Gaps = 49/460 (10%)

Query: 20  QSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHV 79
           Q+ ++  Y  CR    + +       ++ R  + +N +I+ + + G    A+  F  M  
Sbjct: 175 QNAILTAYVACRL---ILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQ 231

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK------ 133
            G+  D + L S L+AS+   +   G+ V  ++  +G      V +ALID+YAK      
Sbjct: 232 LGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQF 291

Query: 134 -------LL------------------LIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                  +L                  L+ +A  +F+ +PVKN V  N+++    +   +
Sbjct: 292 AKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQY 351

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN-DVFMQ 227
              +EL   M   G+  D  TL ++L  C+       G+Q H Y+   C N+    V + 
Sbjct: 352 TEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYI---CDNIITVSVTLC 408

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           +SLI+MY KCG +  A+ +F        G   K+VV W  ++G    +G+ +E I+++++
Sbjct: 409 NSLIDMYAKCGALQTAIDIFF-------GMPEKNVVSWNVIIGALALHGFGEEAIEMFKS 461

Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
           M  +G  PDE+ F  ++SACSH+G V +G  YF+ M+  +++ PG EHY+C+VDLL R G
Sbjct: 462 MQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGG 521

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
            L +A  LI +M  +      V +WGALL AC   G  E+ K   ++ LEL   N G+YV
Sbjct: 522 FLGEAMTLIQKMPVK----PDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYV 577

Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           +LSN+Y++   WD++ ++R++M + G+KK    S+IE+ G
Sbjct: 578 LLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEIDG 617



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 168/392 (42%), Gaps = 44/392 (11%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N   +N +I  +  +  P+ +L  F  M   G   + +     L A  +         V 
Sbjct: 101 NKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVH 160

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           A   K G      V +A++  Y    LI  A  +FD+I  +  V  N++++GY +     
Sbjct: 161 AQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCD 220

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             + L + M  LG++ D FTL +LL A +     + GR VH Y++     +  D  + ++
Sbjct: 221 EAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEI--DSIVTNA 278

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG---------------- 273
           LI+MY KCG +         A H  +  ++KDVV WTSM+  Y                 
Sbjct: 279 LIDMYAKCGHL-------QFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMP 331

Query: 274 ---------------RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
                          + G + E ++L+  M ++G  PD+   V+++S CS+TG + LG +
Sbjct: 332 VKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQ 391

Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
              ++  D  +       + L+D+  + G L  A  +   M ++   S +V + GAL  A
Sbjct: 392 AHCYIC-DNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNV-IIGAL--A 447

Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
            H  G+  +    + +A  L P  +    +LS
Sbjct: 448 LHGFGEEAIEMFKSMQASGLYPDEITFTGLLS 479



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 127/285 (44%), Gaps = 23/285 (8%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K V A +   G  + V     L+ L  +   +  A L+FD+IP  N    N L+ GY  +
Sbjct: 56  KLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNS 115

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
                 L L R M + G   + FT   +L+ACA          VHA  I+    +G    
Sbjct: 116 NDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIK--LGMGPHAC 173

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           +Q++++  Y  C L+  A QVF+    R        +V W SM+  Y + G+  E I L+
Sbjct: 174 VQNAILTAYVACRLILSARQVFDDISDR-------TIVSWNSMIAGYSKMGFCDEAILLF 226

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVD 341
           + ML  G + D    V+++SA S    + LG       VH Y +  G E  S     L+D
Sbjct: 227 QEMLQLGVEADVFTLVSLLSASSKHCNLDLG-----RFVHLYIVITGVEIDSIVTNALID 281

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
           +  + G L  A  + ++MLD+      V  W ++++A  + G  E
Sbjct: 282 MYAKCGHLQFAKHVFDQMLDK-----DVVSWTSMVNAYANQGLVE 321


>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Cucumis sativus]
          Length = 542

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 143/436 (32%), Positives = 223/436 (51%), Gaps = 45/436 (10%)

Query: 45  FLNPRNPLPFN--VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            LN  NP  FN   +I  F    +P  ++  F  M  +G+  D       + A++ + + 
Sbjct: 70  ILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQ 129

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             G  V  H+ KSG     F+ ++LI +YA    I  A  +FDE+P KN V  NA+L GY
Sbjct: 130 ELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGY 189

Query: 163 CEAKLWAGGLELVRLMP----------------------ALGL----DYD-----HFTLS 191
            +        E+  LMP                      A+ L     +D       TL 
Sbjct: 190 AKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLV 249

Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAG 251
           + L ACA L A E GR +H Y++     L   + +Q+SL++MY KCG + +AL VF    
Sbjct: 250 SALCACAHLGALEHGRMMHRYIVEN--ELPLTIVLQTSLVDMYAKCGAIHEALTVFRACS 307

Query: 252 HRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
            +       DV++W +++G    +G  KE + L+  M M G  PDE+ ++ ++S C+H G
Sbjct: 308 LQ-----EADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGG 362

Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM 371
            V+    +F+ +   + + P  EHY+C+VD L RAG++ +A++ + +M  +     + SM
Sbjct: 363 LVEEAWYFFDCL-RKHGMIPKVEHYACMVDALSRAGQVSEAYQFLCQMPVQ----PTSSM 417

Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
            GALLS C   GK ++ K+  ++ +ELDP++ G YV LSN+YA    WD+   +RE M+ 
Sbjct: 418 LGALLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMER 477

Query: 432 KGLKKDVGCSWIEVTG 447
           KG+KK  G S+IEV G
Sbjct: 478 KGVKKSPGFSFIEVYG 493


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 213/399 (53%), Gaps = 14/399 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R    +N +I+ +   G    AL  F  M   G   +   + S  +      D   GK+V
Sbjct: 214 RTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRV 273

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
           +  + +   L +V V +AL+++Y K   I DA   FD +  ++ V  + +++GY +    
Sbjct: 274 RDLIGEDD-LQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRP 332

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL   M A     +  TL  ++ ACA L + E   Q+  Y   +   L +  ++ S
Sbjct: 333 LESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTS--YLGS 390

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY +CG V +A  VF+    R+E    K V+ W SM+     NG+ ++ I LYE M
Sbjct: 391 ALIDMYTRCGHVGRARSVFS----RME---QKGVITWNSMIRGLAMNGFAEDAISLYEKM 443

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
             NG +P+E+ FV +++AC+H G V  G+ +FE M  ++ + P  EH +C+VDLLC++G 
Sbjct: 444 AENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGG 503

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L +A+K I +M        +  +W  LLS+C      EL KLA++K L ++P N  IYV+
Sbjct: 504 LWEAYKFICDM----EVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAMEPDNSSIYVL 559

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSN+YA   +W +  ++R+LM+ K ++K    SWI++ G
Sbjct: 560 LSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDG 598



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 174/388 (44%), Gaps = 69/388 (17%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLD 85
           TT R  +NL           PR P P   +  +S   R  S    L+TFS MH  G ++ 
Sbjct: 67  TTSRAARNLFDAV-------PR-PAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVP 118

Query: 86  T------YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
           +      +  C+ LTAS+       G+QV  H    G L  VFV +AL+D YAK   +  
Sbjct: 119 SGCVPLVFKSCA-LTASSCQ-----GRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMES 172

Query: 140 AELMFDEIPVKNSVCANALLSGYCEA-------KLWAG---------------------- 170
           A  +FDE+PVK+ +  N L++GY +A       +L+ G                      
Sbjct: 173 AVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEF 232

Query: 171 --GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M + G   +  T++++   CA     + G++V   +     +L N V + +
Sbjct: 233 REALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGED--DLQN-VIVHT 289

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L+EMY KC  +  A + F+    R       DVV W++M+  Y +NG   E ++L+E M
Sbjct: 290 ALMEMYVKCRAIDDARREFDRMSQR-------DVVAWSTMIAGYAQNGRPLESLELFERM 342

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
                +P+EV  V VISAC+  G  +L +E       + +L       S L+D+  R G 
Sbjct: 343 KATDCRPNEVTLVGVISACAQLGSDEL-VEQIGNYAENQRLPLTSYLGSALIDMYTRCGH 401

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALL 376
           + +A  + + M  +G     V  W +++
Sbjct: 402 VGRARSVFSRMEQKG-----VITWNSMI 424



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 125/297 (42%), Gaps = 35/297 (11%)

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
           A  +FD +P       +  LS    A      L+    M   G       +  + ++CA 
Sbjct: 72  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 131

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN----------- 248
            +++  GRQVH + + +   L  DVF+ ++L++ Y K G +  A+ VF+           
Sbjct: 132 TASSCQGRQVHCHALVR--GLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPIN 189

Query: 249 --LAGHRLEGEINKDVVL-----------WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
             + G+   G+++K   L           W SM+  Y   G F+E + L++ ML  G +P
Sbjct: 190 CLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARP 249

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           + +   +V S C+ +G +  G    + +  D  L+    H + L+++  +   +D A + 
Sbjct: 250 NAITITSVFSICAKSGDLDTGKRVRDLIGED-DLQNVIVH-TALMEMYVKCRAIDDARRE 307

Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKF--ELGKLAAQKALELDPHNVGIYVMLS 410
            + M  R      V  W  +++     G+    L      KA +  P+ V +  ++S
Sbjct: 308 FDRMSQR-----DVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVIS 359



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 83/202 (41%), Gaps = 10/202 (4%)

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           ++  C L   + Q   +  H L   +  DV + T+++  Y +NG  +  + +++ M +  
Sbjct: 125 VFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVK- 183

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
              D +    +I+  S  G V      F+ M            ++ ++      GE  +A
Sbjct: 184 ---DPIPINCLITGYSKAGDVDKARRLFDGMERRTSAS-----WNSMIACYAHGGEFREA 235

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNL 412
             L + ML  G   +++++  ++ S C   G  + GK       E D  NV ++  L  +
Sbjct: 236 LTLFDRMLSEGARPNAITI-TSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEM 294

Query: 413 YAKFCMWDEIGQLRELMKEKGL 434
           Y K    D+  +  + M ++ +
Sbjct: 295 YVKCRAIDDARREFDRMSQRDV 316


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 133/426 (31%), Positives = 216/426 (50%), Gaps = 18/426 (4%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           L+  Y  C     +G        ++ ++ + +N +IS + +      A+  F  M   G 
Sbjct: 168 LITMYARC---GKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGF 224

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             +  +L S L A   + D + G  V+  V ++    + F+GSALI +Y K   +  A  
Sbjct: 225 QPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARR 284

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +FD +  K+ V  NA+++GY +  +    ++L + M       D  TL  +L ACA + A
Sbjct: 285 IFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGA 344

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            + G+QV  Y   +     +DV++ ++L++MY KCG +  A +VF        G   K+ 
Sbjct: 345 LDLGKQVEIYASER--GFQDDVYVGTALVDMYAKCGSLDNAFRVF-------YGMPKKNE 395

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYF 320
           V W +M+     +G  +E + L+++M+  G    P+++ FV V+SAC H G V  G   F
Sbjct: 396 VSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLF 455

Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
             M   + L P  EHYSC+VDL  RAG L++AW  +  M ++        + GALL AC 
Sbjct: 456 HMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEK----PDEVILGALLGACQ 511

Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
                ++ +   +  LEL+P N G YV+ S LYA    WD+  ++R LMK+KG+ K  GC
Sbjct: 512 KRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGC 571

Query: 441 SWIEVT 446
           SWI++ 
Sbjct: 572 SWIDIN 577



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 173/357 (48%), Gaps = 45/357 (12%)

Query: 54  FNVVISDFCR--NGSPLYALKTFSFMHVHGIFLD--TYAL----CSSLTASTSVKDARFG 105
           FNV+I       N S L AL+ +S M   G+  +  TY      CS+L A   V++ R G
Sbjct: 94  FNVMIRGLSTAWNKSSL-ALEFYSRMKFLGLKPNNLTYPFLFIACSNLLA---VENGRMG 149

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
                 V + G      V  +LI +YA+   + DA  +FDEI  K+ V  N+++SGY + 
Sbjct: 150 ---HCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKM 206

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +     + L R M   G   +  +L ++L AC  L   + G  V  +++     L  + F
Sbjct: 207 RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL--NYF 264

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           M S+LI MYGKCG +  A ++F       +    KD V W +M+  Y +NG  +E IKL+
Sbjct: 265 MGSALIHMYGKCGDLVSARRIF-------DSMKKKDKVTWNAMITGYAQNGMSEEAIKLF 317

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
           + M M+ T PD++  + ++SAC+  G + LG +     V  Y  E G +      + LVD
Sbjct: 318 QDMRMSSTAPDQITLIGILSACASIGALDLGKQ-----VEIYASERGFQDDVYVGTALVD 372

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
           +  + G LD A+++   M  +   S     W A++SA    G+       AQ+AL L
Sbjct: 373 MYAKCGSLDNAFRVFYGMPKKNEVS-----WNAMISALAFHGQ-------AQEALAL 417


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 223/448 (49%), Gaps = 22/448 (4%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           +VH+  F+ GL     I     L++ Y  C     +G        +  R+ + +N +IS 
Sbjct: 149 SVHSSLFKVGLERDVHI--NHSLIMMYAKC---GQVGYARKLFDEITERDTVSWNSMISG 203

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           +   G    A+  F  M   G   D   L S L A + + D R G+ ++          S
Sbjct: 204 YSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS 263

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            F+GS LI +Y K   +  A  +F+++  K+ V   A+++ Y +    +   +L   M  
Sbjct: 264 TFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEK 323

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G+  D  TLS +L AC  + A E G+Q+  +      +L +++++ + L++MYGKCG V
Sbjct: 324 TGVSPDAGTLSTVLSACGSVGALELGKQIETHASE--LSLQHNIYVATGLVDMYGKCGRV 381

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +AL+VF       E    K+   W +M+  Y   G+ KE + L++ M      P ++ F
Sbjct: 382 EEALRVF-------EAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITF 431

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
           + V+SAC H G V  G  YF  M   + L P  EHY+ ++DLL RAG LD+AW    E +
Sbjct: 432 IGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAW----EFM 487

Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL-DPHNVGIYVMLSNLYAKFCMW 419
           +R  G     M  A+L ACH      + + A +  +E+ +  N G YV+ SN+ A   MW
Sbjct: 488 ERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMW 547

Query: 420 DEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           DE  ++R LM+++G+ K  GCSWIE+ G
Sbjct: 548 DESAKMRALMRDRGVVKTPGCSWIEIEG 575



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 149/309 (48%), Gaps = 15/309 (4%)

Query: 70  ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
           AL  +  M   G+  D +       A   +++   G+ V + + K G    V +  +LI 
Sbjct: 112 ALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIM 171

Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
           +YAK   +  A  +FDEI  +++V  N+++SGY EA      ++L R M   G + D  T
Sbjct: 172 MYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERT 231

Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
           L ++L AC+ L     GR +    I K   +G   F+ S LI MYGKCG +  A +VFN 
Sbjct: 232 LVSMLGACSHLGDLRTGRLLEEMAITK--KIGLSTFLGSKLISMYGKCGDLDSARRVFNQ 289

Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
                   I KD V WT+M+ VY +NG   E  KL+  M   G  PD     TV+SAC  
Sbjct: 290 M-------IKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGS 342

Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
            G ++LG +  E    +  L+      + LVD+  + G +++A ++   M  +   +   
Sbjct: 343 VGALELGKQ-IETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEAT--- 398

Query: 370 SMWGALLSA 378
             W A+++A
Sbjct: 399 --WNAMITA 405



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 153/382 (40%), Gaps = 64/382 (16%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           S+L+  Y  C      G L +  +  N    ++ + +  +I+ + +NG    A K F  M
Sbjct: 268 SKLISMYGKC------GDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM 321

Query: 78  HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
              G+  D   L + L+A  SV     GKQ++ H ++     +++V + L+D+Y K   +
Sbjct: 322 EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 381

Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
            +A  +F+ +PVKN    NA+++ Y          E + L   + +     T   +L AC
Sbjct: 382 EEALRVFEAMPVKNEATWNAMITAYAHQ---GHAKEALLLFDRMSVPPSDITFIGVLSAC 438

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
                      VHA ++ + C   +         EM    GLV K               
Sbjct: 439 -----------VHAGLVHQGCRYFH---------EMSSMFGLVPK--------------- 463

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
               +  +T+++ +  R G   E    +E M     KPDE+    ++ AC     V +  
Sbjct: 464 ----IEHYTNIIDLLSRAGMLDEA---WEFMERFPGKPDEIMLAAILGACHKRKDVAIR- 515

Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG----HGSSSVSMWG 373
           E    M+ + K      +Y    ++L      D++ K+   M DRG     G S + + G
Sbjct: 516 EKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEG 575

Query: 374 ALL-----SACHDCGKFELGKL 390
            L+     S    CG+ + G L
Sbjct: 576 ELMEFLAGSDYLQCGREDSGSL 597


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 240/454 (52%), Gaps = 36/454 (7%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVV 57
            +H    + GLL I  +   + L+  Y  C      G L + LK       ++ + ++ +
Sbjct: 235 QIHCLALKNGLLSIASV--GNALVTMYGKC------GCLDDALKTFELSGDKDDITWSAM 286

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I+ + + G    AL  F  MH++G     +     + A + +     GKQ+  +  K+G+
Sbjct: 287 ITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGY 346

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE------AKLWAGG 171
              ++  +AL+D+YAK   + DA   FD +   + V   +++SGY +      A      
Sbjct: 347 ECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCR 406

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           +++ R+MP         T++++LRAC+ L+A E G+Q+HA  I+   +L  +V + S+L 
Sbjct: 407 MQMERIMP------HELTMASVLRACSSLAALEQGKQIHAQTIKYGFSL--EVPIGSALS 458

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
            MY KCG    +L+  NL   R+    ++D++ W +M+    +NG   + ++L+E +   
Sbjct: 459 TMYAKCG----SLEDGNLVFRRMP---SRDIMTWNAMISGLSQNGEGLKALELFEELRHG 511

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
            TKPD V FV V+SACSH G V+ G  YF  M+ ++ + P  EHY+C+VD+L RAG+L +
Sbjct: 512 TTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHE 571

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
             + I E     HG   + +W  LL AC +   +ELG  A +K +EL       Y++LS+
Sbjct: 572 TKEFI-ESATIDHG---MCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSS 627

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +Y      D++ ++R LMK +G+ K+ GCSWIE+
Sbjct: 628 IYTALGRSDDVERVRRLMKLRGVNKEPGCSWIEL 661



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 170/351 (48%), Gaps = 33/351 (9%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYA--LKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR 103
           +  ++ + +N +I+ + + G+  Y+  ++ F  M       + +      TA++S  +  
Sbjct: 71  ITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETF 130

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
            G Q  A   K+     VFVGS+LI++Y K+  + DA  +FD IP +N+V    ++SGY 
Sbjct: 131 GGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYA 190

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
             ++     EL  LM      +D F  +++L A        +G+Q+H      C  L N 
Sbjct: 191 MERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIH------CLALKNG 244

Query: 224 VFMQSS----LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           +   +S    L+ MYGKCG +  AL+ F L+G       +KD + W++M+  Y + G   
Sbjct: 245 LLSIASVGNALVTMYGKCGCLDDALKTFELSG-------DKDDITWSAMITGYAQAGDSH 297

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE----H 335
           E + L+  M +NG KP E  FV VI+ACS  G ++ G +     +H Y L+ G E     
Sbjct: 298 EALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQ-----IHGYSLKAGYECQIYF 352

Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            + LVD+  + G L  A K  + + +       + +W +++S     G+ E
Sbjct: 353 MTALVDMYAKCGSLVDARKGFDYLKE-----PDIVLWTSMISGYAQNGENE 398



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 156/351 (44%), Gaps = 24/351 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           RN + +  +IS +        A + F  M       D +   S L+A T      +GKQ+
Sbjct: 177 RNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQI 236

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K+G LS   VG+AL+ +Y K   + DA   F+    K+ +  +A+++GY +A   
Sbjct: 237 HCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDS 296

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L L   M   G     FT   ++ AC+ + A E G+Q+H Y ++        ++  +
Sbjct: 297 HEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLK--AGYECQIYFMT 354

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +L++MY KCG +  A + F+            D+VLWTSM+  Y +NG  +  + LY  M
Sbjct: 355 ALVDMYAKCGSLVDARKGFDYLKE-------PDIVLWTSMISGYAQNGENETALTLYCRM 407

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
            M    P E+   +V+ ACS    ++ G + + + + + + LE      S L  +  + G
Sbjct: 408 QMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIG--SALSTMYAKCG 465

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
            L+    +   M  R      +  W A++S     G+         KALEL
Sbjct: 466 SLEDGNLVFRRMPSR-----DIMTWNAMISGLSQNGE-------GLKALEL 504



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 159/370 (42%), Gaps = 51/370 (13%)

Query: 80  HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
           H  F+D    C      T  KD + GK + A + ++G  SSV++ ++L++LYAK   I  
Sbjct: 10  HRSFVDLLLRC------TRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVK 63

Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKL--WAGGLELVRLMPALGLDYDHFTLSALLRAC 197
           A+L+F+ I  K+ V  N L++GY +     ++  +EL + M A     +  T S +  A 
Sbjct: 64  AKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAA 123

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
           +       G Q HA  I K  N   DVF+ SSLI MY K G +  A +VF+    R    
Sbjct: 124 SSSPETFGGLQAHALAI-KTSNF-YDVFVGSSLINMYCKIGCMLDARKVFDTIPER---- 177

Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
              + V W +++  Y       E  +L+  M       D+  + +V+SA +    V  G 
Sbjct: 178 ---NTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGK 234

Query: 318 EY----------------------------FEWMVHDYKLEPGPEH--YSCLVDLLCRAG 347
           +                              +  +  ++L    +   +S ++    +AG
Sbjct: 235 QIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAG 294

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
           +  +A  L   M   G+  S  +  G +++AC D G  E GK     +L+   +   IY 
Sbjct: 295 DSHEALNLFYNMHLNGNKPSEFTFVG-VINACSDIGALEEGKQIHGYSLKAG-YECQIYF 352

Query: 408 M--LSNLYAK 415
           M  L ++YAK
Sbjct: 353 MTALVDMYAK 362


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/399 (32%), Positives = 214/399 (53%), Gaps = 17/399 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +IS F + G    A+  F  M V         L S L A     D   GK +
Sbjct: 169 RDVVSWNSLISGFMKAGHFDEAISVFFRMDVEP---SMTTLVSVLAACARNGDLCTGKGI 225

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V +  +  ++ +G+A++D+Y K    ++A+ +FDE+P ++ V    +++G  ++   
Sbjct: 226 HG-VIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHP 284

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              LEL  +M  LG+  D   L+++L ACA L   +FG  VH Y+ ++   +  D+ + +
Sbjct: 285 KQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQR--GIKWDIHIGT 342

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           ++++MY KCG +  AL++F     R       +   W ++L     +G   E + L+E M
Sbjct: 343 AIVDMYAKCGCIEMALKIFYSMSQR-------NTFTWNALLCGLAMHGLVHEALNLFEVM 395

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           +++G KP+E+ F+ +++AC H G V  G +YF+ M   Y L P  EHY C++DL CRAG 
Sbjct: 396 IISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGL 455

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
           L++A +L   M  +      V +WG LL+AC   G  EL        LELD  + G++V+
Sbjct: 456 LEEAVELARTMPMK----PDVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFVL 511

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           LSN+ A    W  + +LR LMK++G++K  G S IEV G
Sbjct: 512 LSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDG 550



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 155/329 (47%), Gaps = 27/329 (8%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
            PFN +I+ +     P  A+  +  M   G   D +     L A ++   +R G+QV   
Sbjct: 71  FPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGV 130

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           V K G L+  +V ++LI  Y        A  +FDE+ V++ V  N+L+SG+ +A  +   
Sbjct: 131 VVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFD-- 188

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
            E + +   + ++    TL ++L ACA       G+ +H  + R+      ++ + ++++
Sbjct: 189 -EAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERR---FKVNLVLGNAML 244

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY K G   +A  +F+    R       D+V WT M+    ++ + K+ ++L+  M   
Sbjct: 245 DMYVKNGCFYEAKNIFDELPTR-------DIVSWTIMITGLVQSDHPKQSLELFSMMRTL 297

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE---HY-SCLVDLLCRAG 347
           G  PD +   +V+SAC+  G +  G     W VH+Y  + G +   H  + +VD+  + G
Sbjct: 298 GISPDAIILTSVLSACASLGTLDFG----TW-VHEYINQRGIKWDIHIGTAIVDMYAKCG 352

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALL 376
            ++ A K+   M  R     +   W ALL
Sbjct: 353 CIEMALKIFYSMSQR-----NTFTWNALL 376



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 140/341 (41%), Gaps = 56/341 (16%)

Query: 41  NCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK 100
           N    L  R+ + + ++I+   ++  P  +L+ FS M   GI  D   L S L+A  S+ 
Sbjct: 258 NIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLG 317

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
              FG  V  ++ + G    + +G+A++D+YAK   I  A  +F  +  +N+   NALL 
Sbjct: 318 TLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLC 377

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           G     L    L L  +M   G+  +  T  A+L AC      + GR+    M  K  NL
Sbjct: 378 GLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNM-SKLYNL 436

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
              +     +I+++ + GL+                                      +E
Sbjct: 437 LPKLEHYGCMIDLFCRAGLL--------------------------------------EE 458

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            ++L   M M   KPD + +  +++AC+  G ++L        + DY LE   +     V
Sbjct: 459 AVELARTMPM---KPDVLIWGLLLNACTTVGNIELSHR-----IQDYILELDHDDSGVFV 510

Query: 341 DLLCRAGELDKAW----KLINEMLDRG----HGSSSVSMWG 373
            LL     +++ W    +L   M DRG     GSS + + G
Sbjct: 511 -LLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDG 550


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 139/415 (33%), Positives = 224/415 (53%), Gaps = 22/415 (5%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYAL-KTFSFMHVHGIFLDTYALCSS 92
           G +++  K  N     + + +N ++     + +P+  + K F+ M   G+  +     + 
Sbjct: 530 GAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINL 589

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKN 151
           L A + +     GKQV A V K G +    V +ALI  YAK   +   E +F  +   ++
Sbjct: 590 LAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRD 649

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           ++  N+++SGY         ++ V LM   G   D  T S +L ACA ++A E G ++HA
Sbjct: 650 AISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHA 709

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
           + IR   +L +DV ++S+L++MY KCG V  A ++FN    R E         W SM+  
Sbjct: 710 FGIRS--HLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNE-------FSWNSMISG 760

Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
           Y R+G  ++ I+++E ML +   PD V FV+V+SACSH G V+ G+EYFE M+ D+ + P
Sbjct: 761 YARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFE-MMPDHGILP 819

Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH---DCGKFELG 388
             EHYSC++DLL RAG++DK    I E + R     +  +W  +L AC    D    +LG
Sbjct: 820 QIEHYSCVIDLLGRAGKIDK----IKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLG 875

Query: 389 KLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           + A++  LE++P N   YV+ SN +A   MW++  + R  M++   KK+ G SW+
Sbjct: 876 REASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWV 930



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 126/282 (44%), Gaps = 27/282 (9%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           QV   V KSG  S ++VGSAL+  +A+  L  +A+ +F  +  KN+V  N L+ G     
Sbjct: 296 QVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQD 355

Query: 167 LWAGGLELVRLMPAL--GLDYDHFTLSALLRACAGLSAAE----FGRQVHAYMIRKCCNL 220
                 E V++       +D +  T   LL A A  S +E     GR VH +M+R     
Sbjct: 356 F---SEEAVKIFVGTRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLT- 411

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
              + + + L+ MY KCG +  A ++F L    +E     D + W +++    +NG  +E
Sbjct: 412 DLKIAVSNGLVNMYAKCGAIESASKIFQL----MEA---TDRISWNTIISALDQNGNCEE 464

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSH----TGQVKLGIEYFEWMVHDYKLEPGPEHY 336
            +  Y  M  +   P   A ++ +S+C+     T   ++  +  +W      L+      
Sbjct: 465 AVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKW-----GLDLDTSVS 519

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           + LV +    G +   WK+ N M +    S + +M G + S+
Sbjct: 520 NVLVKMYGECGAMSDYWKVFNSMAEHDEVSWN-TMMGVMASS 560



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 12/212 (5%)

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           DA   + +   + K G    +F+ + L++ YAK   +  A  +FDE+P +N+V    L+S
Sbjct: 76  DANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVS 135

Query: 161 GYCEAKLWAGGLELVRLM---PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           GY    +      + R M      G     FT   LLRAC        G  V  + +   
Sbjct: 136 GYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSK 195

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
               ++  + ++LI MYG C +         LA    +G   +D++ W +++ VY + G 
Sbjct: 196 TEYASNTTVCNALISMYGSCTVGPPI-----LAQRVFDGTPIRDLITWNALMSVYAKKGD 250

Query: 278 FKEVIKLYEAMLMNGT----KPDEVAFVTVIS 305
                 L++ M    +    +P E  F ++I+
Sbjct: 251 VASTFTLFKDMQRGDSRIQLRPTEHTFGSLIT 282


>gi|242088973|ref|XP_002440319.1| hypothetical protein SORBIDRAFT_09g029650 [Sorghum bicolor]
 gi|241945604|gb|EES18749.1| hypothetical protein SORBIDRAFT_09g029650 [Sorghum bicolor]
          Length = 671

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 132/408 (32%), Positives = 212/408 (51%), Gaps = 18/408 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFM----HVHGIFLDTYALCSSLTASTSVKD 101
           +  R+   +  +I+ + + G    A++ F  M      +    + Y   + + A  +++ 
Sbjct: 223 MGTRDVAAWTTLIASYVQTGRAEEAIEAFVRMLRNESSNSASPNEYTFSAVIAACPNIER 282

Query: 102 ARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
           A  G+Q+ A   + G   +  V ++L+ LYA+   +  A+ +F E  VK+ V  + ++SG
Sbjct: 283 AYLGEQLHAQAARRGLSHTRSVANSLVKLYARRGRLSAADAIFRENAVKDVVSWSTIISG 342

Query: 162 YCEAKLWAGGLELVRLMP--ALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           Y +  L      L   M   +     + FTL++L   CA  ++   GRQ+HA  +     
Sbjct: 343 YAQEGLVEESFALFSEMRHHSSCPRPNEFTLASLFSVCASAASLYAGRQLHALAV--AAG 400

Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
           L +   ++S+L+ MYGK G +T A  +F+            DV+ WT+M+  +  +G+ K
Sbjct: 401 LEHHAMVRSALVNMYGKSGSMTDANVIFS-------SRTRDDVISWTAMIVGHAEHGHSK 453

Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
           E  +L+E M   G KPD V F+ V++ACSH G+V+LG+ Y   M   Y +EP  EHY C+
Sbjct: 454 EAFQLFEEMCRVGLKPDHVTFIGVLTACSHAGEVELGLRYLNAMNKCYVVEPEKEHYGCV 513

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL RAG + +A +LI  +   G       +W +LL AC   G  E GK AA++ +E +
Sbjct: 514 VDLLARAGRIHEAEELIGRIAADGRDG---VVWTSLLRACAARGAEETGKKAAERMMEAE 570

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
           P   G +V ++NLYA    W E  Q R LMK+KG+ K  G S +EV G
Sbjct: 571 PWGSGAHVAMANLYASKGQWREAAQERHLMKQKGVLKGAGWSSVEVGG 618



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 171/396 (43%), Gaps = 59/396 (14%)

Query: 37  GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
           G+L   L+ L+    +N + +  +++   R G    AL+ F+ M   G+  D++A  ++L
Sbjct: 110 GSLELALQVLDETPCKNVVSWTTLVASLARGGRRHDALRRFAEMRASGVDCDSHACAAAL 169

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
           TA         G++V A   K G  +  FV +AL  LYA+   +  A      +  ++  
Sbjct: 170 TACAGAGLRARGREVHALCAKLGLDAVPFVANALAALYARCGDVDRALAAVGRMGTRDVA 229

Query: 154 CANALLSGYCEAKLWAGGLE----LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
               L++ Y +       +E    ++R   +     + +T SA++ AC  +  A  G Q+
Sbjct: 230 AWTTLIASYVQTGRAEEAIEAFVRMLRNESSNSASPNEYTFSAVIAACPNIERAYLGEQL 289

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           HA   R+   L +   + +SL+++Y + G ++ A  +F       E  + KDVV W++++
Sbjct: 290 HAQAARR--GLSHTRSVANSLVKLYARRGRLSAADAIFR------ENAV-KDVVSWSTII 340

Query: 270 GVYGRNGYFKEVIKLYEAMLMNGT--KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
             Y + G  +E   L+  M  + +  +P+E    ++ S C+    +  G +     +H  
Sbjct: 341 SGYAQEGLVEESFALFSEMRHHSSCPRPNEFTLASLFSVCASAASLYAGRQ-----LHAL 395

Query: 328 KLEPGPEHY----SCLVDLLCRAGEL-------------------------------DKA 352
            +  G EH+    S LV++  ++G +                                +A
Sbjct: 396 AVAAGLEHHAMVRSALVNMYGKSGSMTDANVIFSSRTRDDVISWTAMIVGHAEHGHSKEA 455

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           ++L  EM   G     V+  G +L+AC   G+ ELG
Sbjct: 456 FQLFEEMCRVGLKPDHVTFIG-VLTACSHAGEVELG 490



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 105/244 (43%), Gaps = 26/244 (10%)

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
           +AL D YAK   +  A  + DE P KN V    L++           L     M A G+D
Sbjct: 100 TALADAYAKAGSLELALQVLDETPCKNVVSWTTLVASLARGGRRHDALRRFAEMRASGVD 159

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV--FMQSSLIEMYGKCGLVTK 242
            D    +A L ACAG      GR+VHA     C  LG D   F+ ++L  +Y +CG V +
Sbjct: 160 CDSHACAAALTACAGAGLRARGREVHAL----CAKLGLDAVPFVANALAALYARCGDVDR 215

Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM----NGTKPDEV 298
           AL      G R       DV  WT+++  Y + G  +E I+ +  ML     N   P+E 
Sbjct: 216 ALAAVGRMGTR-------DVAAWTTLIASYVQTGRAEEAIEAFVRMLRNESSNSASPNEY 268

Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWK 354
            F  VI+AC +  +  LG +     +H      G  H     + LV L  R G L  A  
Sbjct: 269 TFSAVIAACPNIERAYLGEQ-----LHAQAARRGLSHTRSVANSLVKLYARRGRLSAADA 323

Query: 355 LINE 358
           +  E
Sbjct: 324 IFRE 327



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 104/258 (40%), Gaps = 31/258 (12%)

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY---DHFTLSALLRAC------ 197
           +P ++ V    LLSGY  A  + G + L     A    +   D F LS +L+AC      
Sbjct: 1   MPHRDEVAYATLLSGYAMAADFPGAMALFSRFRASYPPHAAADPFILSPVLKACASASAS 60

Query: 198 ---------AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
                      L   +       +      +  + VF+ ++L + Y K G +  ALQV  
Sbjct: 61  AAAGAGASVGLLHLPQAAAAAALHAFAVHSSAVSSVFVSTALADAYAKAGSLELALQV-- 118

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                L+    K+VV WT+++    R G   + ++ +  M  +G   D  A    ++AC+
Sbjct: 119 -----LDETPCKNVVSWTTLVASLARGGRRHDALRRFAEMRASGVDCDSHACAAALTACA 173

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
             G    G E    +     L+  P   + L  L  R G++D+A   +  M     G+  
Sbjct: 174 GAGLRARGRE-VHALCAKLGLDAVPFVANALAALYARCGDVDRALAAVGRM-----GTRD 227

Query: 369 VSMWGALLSACHDCGKFE 386
           V+ W  L+++    G+ E
Sbjct: 228 VAAWTTLIASYVQTGRAE 245


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 204/396 (51%), Gaps = 14/396 (3%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           LP+N +IS F  +G    A+  F  M  + I  D Y  CS+L +   ++   + KQ+   
Sbjct: 334 LPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGM 393

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           + KSG +  V + +AL+D YAK   +     +FD     N +    L++ Y ++  W   
Sbjct: 394 IWKSGSIG-VSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDA 452

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           L +   M  +G   +  T S +L +CA L + E+G+QVH+   +       D  ++S LI
Sbjct: 453 LSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKT--GFARDKCVESVLI 510

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MY KCG V  A++VF       E   + DV+ WT+M+  Y ++G  K+ ++L+  M + 
Sbjct: 511 DMYAKCGSVRDAIKVF-------ESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELV 563

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
              P+   F+ ++ ACSH G V  G+ YF  M   Y L P  EHY+C+VD+L R G L +
Sbjct: 564 LPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTE 623

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
           AWK I +M           +W  LL AC   G  +L K+AAQK L  +P +    V+LSN
Sbjct: 624 AWKFIMKMPIE----PDEKVWSTLLGACRVHGNIQLAKIAAQKVLSYNPDDFAALVLLSN 679

Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            Y +    +    +R +MK + ++K+ G SWI + G
Sbjct: 680 TYREAGNIEGGLNVRNMMKSQAMRKETGMSWICIGG 715



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 199/448 (44%), Gaps = 38/448 (8%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
           ++H    +  L+   L +  ++L++ Y+ C    + G+       +  ++   + V++  
Sbjct: 82  SIHGFVIKFQLIEKSLTVMLNQLVIAYSKC---SDFGSARQVFDEIPQKSVFSWTVLMVG 138

Query: 61  FCRNGSPLYALKTFSFMHVHG--IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
              NG   Y      F+ + G  I  D YAL +++ A   V     G+ V A V   G+ 
Sbjct: 139 ATENG--FYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFS 196

Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
           S  FV ++L+ +YAKL  I D+  +F+ +  +N V  NA++SG+    L+A        M
Sbjct: 197 SRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRM 256

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGK 236
               +  +     ++ +A   L   E GR    Y+ R    +G  +++ + ++LI+M+ K
Sbjct: 257 LGEEIRPNVACFISVSKAIGQLGDVEKGR----YINRIAFEIGMQSNIHVGTALIDMFAK 312

Query: 237 CGLVTKALQVF--NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
           CG VT++  VF  N +G  +        + W +M+  +  +G+ +E + L+  M  N  K
Sbjct: 313 CGCVTESWSVFVSNFSGCGVN-------LPWNAMISGFTISGHGEEAMLLFLRMCQNNIK 365

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS---CLVDLLCRAGELDK 351
            D   + + +++ +        +EY +  +H    + G    S    L+D   + GELD 
Sbjct: 366 RDVYTYCSTLNSIADM----RSLEYVK-QLHGMIWKSGSIGVSLCNALMDAYAKCGELDA 420

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYVML 409
             KL     D    S+ +S W  L++A     ++E  L   +  + +   P+ V    +L
Sbjct: 421 MRKL----FDTWEESNQIS-WTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVL 475

Query: 410 SNLYAKFCMWDEIGQLRELMKEKGLKKD 437
           ++  A  C  +   Q+  L  + G  +D
Sbjct: 476 ASC-ASLCSLEYGQQVHSLTCKTGFARD 502



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/350 (19%), Positives = 148/350 (42%), Gaps = 18/350 (5%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           LM  Y  C     L  +          N + +  +++ + ++     AL  FS M   G 
Sbjct: 408 LMDAYAKC---GELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGF 464

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
             +       L +  S+    +G+QV +   K+G+     V S LID+YAK   + DA  
Sbjct: 465 QPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIK 524

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F+ +   + +   A++SGY +  +    LEL R M  +  + +  T   LL AC+    
Sbjct: 525 VFESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGL 584

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
            + G + + +++ +   L  ++   + ++++ G+ G +T+A +        ++  I  D 
Sbjct: 585 VDEGLR-YFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFI------MKMPIEPDE 637

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
            +W+++LG    +G   ++ K+    +++    D  A V + +     G ++ G+     
Sbjct: 638 KVWSTLLGACRVHGNI-QLAKIAAQKVLSYNPDDFAALVLLSNTYREAGNIEGGLNVRNM 696

Query: 323 MVHDYKLEPGPEHYSCL---VDLLCRAGEL----DKAWKLINEMLDRGHG 365
           M      +     + C+   +   C   +     D  +K +N ++++  G
Sbjct: 697 MKSQAMRKETGMSWICIGGKIHKFCSGDQYHPQKDDIYKTLNVLMEKVQG 746


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 220/397 (55%), Gaps = 14/397 (3%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  +I+ + ++     A+  F      GI +D   + S L A + +K     KQV
Sbjct: 429 KDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQV 488

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            ++  ++G L  + + + +ID+Y +   +  A  +F+ +  K+ V   ++++ + E  L 
Sbjct: 489 HSYAIRNGLLD-LILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLL 547

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              + L   M   G+  D   L  +L A AGLS+   G+++H ++IR    +   V   S
Sbjct: 548 HEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVV--S 605

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           SL++MY  CG +  AL+VF+ A         KDVVLWT+M+   G +G+ K+ I +++ M
Sbjct: 606 SLVDMYSGCGSMNYALKVFDEAK-------CKDVVLWTAMINATGMHGHGKQAIYIFKRM 658

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           L  G  PD V+F+ ++ ACSH+  V  G  Y + MV  YKL+P  EHY+C+VDLL R+G+
Sbjct: 659 LETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQ 718

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            ++A+K I  M        SV +W ALL AC      EL  +A  K LEL+P N G YV+
Sbjct: 719 TEEAYKFIKSMPLE---PKSV-VWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVL 774

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +SN++A+   W+ + ++R  M E+GL+KD  CSWIE+
Sbjct: 775 VSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEI 811



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 194/418 (46%), Gaps = 37/418 (8%)

Query: 1   NVHAHQFETGLLLICLIIF-QSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNV 56
            +HAH   TG L      F  ++L+  Y  C      G L +  +  +    R    +N 
Sbjct: 76  QLHAHAVATGALGDDDAGFLATKLLFMYGKC------GRLPDAHRLFDGMPARTVFSWNA 129

Query: 57  VISDFCRNGSPLYALKTFSFMH----VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
           +I     +G    A+  +  M     V G   D   L S L A  +  D R G +V    
Sbjct: 130 LIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLA 189

Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA-NALLSGYCEAKLWAGG 171
            KSG   S  V +AL+ +YAK  L+  A  +F+ +     V + N+ +SG  +  ++   
Sbjct: 190 VKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEA 249

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ-SSL 230
           L+L R M + G   + +T   +L+ CA L+    GR++HA ++ KC   G +  +Q ++L
Sbjct: 250 LDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALL-KC---GTEFNIQCNAL 305

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           + MY +CG V  AL+VF   G       +KD + W SML  Y +N  + E I  +  M+ 
Sbjct: 306 LVMYARCGWVDSALRVFREIG-------DKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQ 358

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           NG  PD    V+++SA  H G++  G E   + V   +L+   +  + L+D+  +   ++
Sbjct: 359 NGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQ-RLDSDLQIANTLMDMYIKCYSVE 417

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKL--AAQKALELDPHNVG 404
            + ++ + M  + H S     W  +++      ++   +GK   A ++ +++DP  +G
Sbjct: 418 CSARVFDRMRIKDHVS-----WTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMG 470



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 162/336 (48%), Gaps = 16/336 (4%)

Query: 43  LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
            + +  ++ + +N ++S + +N     A+  F  M  +G   D   + S L+A   +   
Sbjct: 322 FREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRL 381

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
             G++V A+  K    S + + + L+D+Y K   +  +  +FD + +K+ V    +++ Y
Sbjct: 382 INGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACY 441

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            ++  ++  +   R     G+  D   + ++L AC+GL +    +QVH+Y IR   N   
Sbjct: 442 AQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIR---NGLL 498

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
           D+ +++ +I++YG+CG V  AL +F +          KD+V WTSM+  +  NG   E +
Sbjct: 499 DLILKNRIIDIYGECGEVCYALNIFEMLD-------KKDIVTWTSMVNCFAENGLLHEAV 551

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
            L+  ML  G +PD VA V ++ A +    +  G E   +++   K        S LVD+
Sbjct: 552 ALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRG-KFPVEGAVVSSLVDM 610

Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
               G ++ A K+ +E          V +W A+++A
Sbjct: 611 YSGCGSMNYALKVFDEA-----KCKDVVLWTAMINA 641



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 153/319 (47%), Gaps = 19/319 (5%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           + R+   +N  IS   +NG  L AL  F  M   G  +++Y     L     +     G+
Sbjct: 226 DGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGR 285

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           ++ A + K G   ++   +AL+ +YA+   +  A  +F EI  K+ +  N++LS Y + +
Sbjct: 286 ELHAALLKCGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNR 344

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
           L+A  ++    M   G + DH  + +LL A   L     GR+VHAY +++   L +D+ +
Sbjct: 345 LYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQ--RLDSDLQI 402

Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
            ++L++MY KC  V  + +VF+    R+     KD V WT+++  Y ++  + E I  + 
Sbjct: 403 ANTLMDMYIKCYSVECSARVFD----RMR---IKDHVSWTTIIACYAQSSRYSEAIGKFR 455

Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY---SCLVDLL 343
                G K D +   +++ ACS    + L  +     VH Y +  G       + ++D+ 
Sbjct: 456 TAQKEGIKVDPMMMGSILEACSGLKSISLLKQ-----VHSYAIRNGLLDLILKNRIIDIY 510

Query: 344 CRAGELDKAWKLINEMLDR 362
              GE+  A  +  EMLD+
Sbjct: 511 GECGEVCYALNIF-EMLDK 528



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 6/216 (2%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VH++    GLL +   I ++R++  Y  C     +    N  + L+ ++ + +  +++ 
Sbjct: 487 QVHSYAIRNGLLDL---ILKNRIIDIYGEC---GEVCYALNIFEMLDKKDIVTWTSMVNC 540

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F  NG    A+  F  M   GI  D+ AL   L A   +     GK++   + +  +   
Sbjct: 541 FAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVE 600

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
             V S+L+D+Y+    ++ A  +FDE   K+ V   A+++           + + + M  
Sbjct: 601 GAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLE 660

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
            G+  DH +  ALL AC+     + G+     M+ K
Sbjct: 661 TGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSK 696


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/409 (34%), Positives = 219/409 (53%), Gaps = 16/409 (3%)

Query: 41  NCLKFLNPR--NP--LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAS 96
           +  +FL  R  NP  + +N +IS +  NG    +++ F  +   G   ++  L + +   
Sbjct: 264 DSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVY 323

Query: 97  TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
           +        + + A V K+   +   V +AL  LY +L  +  A  +FD +  K     N
Sbjct: 324 SPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWN 383

Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
           A++SGY +  L    + L +LM  L +  +  T+S+ L ACA L A   G+ VH  + ++
Sbjct: 384 AMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKE 443

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
              L  +V++ ++LI+MY KCG + +A  +F+    R++   NK+VV W +M+  YG +G
Sbjct: 444 KLEL--NVYVMTALIDMYAKCGSIAEARSIFD----RMD---NKNVVSWNAMISGYGLHG 494

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
              E +KLY+ ML     P    F++VI ACSH G V  G + F  M ++Y++ PG EH 
Sbjct: 495 QGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHC 554

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
           +C+VDLL RAG+L++A +LI+E      G     +WGALL AC      +L KLA+QK  
Sbjct: 555 TCMVDLLGRAGKLNEALELISEFPQSAIGP---GVWGALLGACMVHKNSDLAKLASQKLF 611

Query: 397 ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           ELD  N G YV+LSNLY     + E   +R+  K + L K  GC+ IE+
Sbjct: 612 ELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEI 660



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 145/312 (46%), Gaps = 20/312 (6%)

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           DA   + +      +G+ +  FV SAL  LY KL    DA  +FD +P  +++  N LL+
Sbjct: 129 DAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLA 188

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           G   ++        VR++ A  +  D  TL++ LRA A  S    GR VH Y ++  C L
Sbjct: 189 GLPGSEALEA---FVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVK--CGL 243

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
                + + L+ +Y KCG +  A  +F+    R++   N D+V + +++  Y  NG  + 
Sbjct: 244 AEHEHVVTGLMSLYSKCGDMDSAQFLFD----RMD---NPDLVAYNALISGYSVNGMVES 296

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            ++L++ +  +G +P+    V VI   S  G  +L        V   +L+      + L 
Sbjct: 297 SVELFKELTASGWRPNSSTLVAVIPVYSPFGH-ELLARCLHAFVVKARLDADALVSTALT 355

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ--KALEL 398
            L CR  +++ A  + + ML++     ++  W A++S     G  E+     Q  + L +
Sbjct: 356 TLYCRLNDMESARSIFDAMLEK-----TMESWNAMISGYAQNGLTEMAVALFQLMQELNV 410

Query: 399 DPHNVGIYVMLS 410
            P+ + I   LS
Sbjct: 411 QPNPITISSTLS 422



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 143/309 (46%), Gaps = 16/309 (5%)

Query: 70  ALKTFSFMHVHG-IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
           AL+ F  M   G +  D+  L SSL A+        G+ V  +  K G      V + L+
Sbjct: 195 ALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLM 254

Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
            LY+K   +  A+ +FD +   + V  NAL+SGY    +    +EL + + A G   +  
Sbjct: 255 SLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSS 314

Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
           TL A++   +        R +HA++++    L  D  + ++L  +Y +   +  A  +F 
Sbjct: 315 TLVAVIPVYSPFGHELLARCLHAFVVK--ARLDADALVSTALTTLYCRLNDMESARSIF- 371

Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                 +  + K +  W +M+  Y +NG  +  + L++ M     +P+ +   + +SAC+
Sbjct: 372 ------DAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACA 425

Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
           H G + LG ++   ++   KLE      + L+D+  + G + +A  + + M ++     +
Sbjct: 426 HLGALSLG-KWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNK-----N 479

Query: 369 VSMWGALLS 377
           V  W A++S
Sbjct: 480 VVSWNAMIS 488


>gi|15221226|ref|NP_177580.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169846|sp|Q9CA73.1|PP119_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74400
 gi|12324820|gb|AAG52382.1|AC011765_34 hypothetical protein; 20273-21661 [Arabidopsis thaliana]
 gi|332197466|gb|AEE35587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 134/426 (31%), Positives = 232/426 (54%), Gaps = 25/426 (5%)

Query: 31  RHKKNLGTLTNCLKFL--NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTY 87
           RH  +LG +     FL       L  N  +  +  +G P+ AL  F         F+D++
Sbjct: 6   RHLHSLGVINKFDSFLLHFHTKSLKSNHTLKQYLESGEPIKALLDFRHRFRQSPSFVDSF 65

Query: 88  ALCSSLTASTSVKDARF-GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
           ++  ++  S++ K +   G+Q+ A V K G+ + + + ++L+  Y+ +  +  A  +FDE
Sbjct: 66  SVLFAIKVSSAQKASSLDGRQIHALVRKLGFNAVIQIQTSLVGFYSSVGDVDYARQVFDE 125

Query: 147 IPVK-NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
            P K N V   A++S Y E +     +EL + M A  ++ D   ++  L ACA L A + 
Sbjct: 126 TPEKQNIVLWTAMISAYTENENSVEAIELFKRMEAEKIELDGVIVTVALSACADLGAVQM 185

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G ++++  I++   L  D+ +++SL+ MY K G   KA ++F+ +       + KDV  +
Sbjct: 186 GEEIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGETEKARKLFDES-------MRKDVTTY 238

Query: 266 TSMLGVYGRNGYFKEVIKLYEAM-LMNGTK-----PDEVAFVTVISACSHTGQVKLGIEY 319
           TSM+  Y  NG  +E ++L++ M  ++ ++     P++V F+ V+ ACSH+G V+ G  +
Sbjct: 239 TSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITPNDVTFIGVLMACSHSGLVEEGKRH 298

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           F+ M+ DY L+P   H+ C+VDL CR+G L  A + IN+M  +     +  +W  LL AC
Sbjct: 299 FKSMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEFINQMPIK----PNTVIWRTLLGAC 354

Query: 380 HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439
              G  ELG+   ++  ELD  +VG YV LSN+YA   MWDE  ++R+ ++++ +    G
Sbjct: 355 SLHGNVELGEEVQRRIFELDRDHVGDYVALSNIYASKGMWDEKSKMRDRVRKRRMP---G 411

Query: 440 CSWIEV 445
            SWIE+
Sbjct: 412 KSWIEL 417


>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g28640-like [Vitis vinifera]
          Length = 511

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 145/423 (34%), Positives = 226/423 (53%), Gaps = 22/423 (5%)

Query: 35  NLGTLT-NCLKFLNPRNP--LPFNVVISDFCRNGSPLYALKTFSFM-HVHGIFLDTYALC 90
           N G+L+   L F   +NP    +N +I  + R+ +P  AL  F  M     +  D +   
Sbjct: 50  NSGSLSYASLIFSQIQNPNLFAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFP 109

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSS-VFVGSALIDLYAKLLLIHDAELMFDEIPV 149
             ++A T+      GKQ+   V K+G  SS   V +AL+  YA+   + DA  +FDEIP 
Sbjct: 110 FIISACTNSLWMLLGKQIHNWVLKNGVASSDRHVQTALVRFYAECCAMGDARKLFDEIPN 169

Query: 150 KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
            + V  N LL+GY    L    L   R M   G++ D F L+  L+ CA L A + G+ +
Sbjct: 170 LDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLGALQQGKWI 229

Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
           H Y+ ++   L  DVF+ ++L++MY KCG + ++++VF       EG   ++V  W++M+
Sbjct: 230 HEYVTKRKW-LEADVFIGTALVDMYAKCGCIDRSVEVF-------EGMTKRNVFSWSAMI 281

Query: 270 GVYGRNGYFKEVIKLYEAM-LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           G +  +G+ ++ ++  E M + +G +PD V  + VI AC+H G  + G    E M   Y 
Sbjct: 282 GGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYG 341

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
           + P  EHYSC+VDLLCRAG+LD+A KLI  M  +       ++WGALLS C      +L 
Sbjct: 342 ILPKHEHYSCMVDLLCRAGQLDEALKLIRRMPMK----PRAAVWGALLSGCRTHNNVDLA 397

Query: 389 KLAAQKALEL----DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
           +LAA++ L +         G YV LSN+Y      ++  ++R ++ +K +K   GCS IE
Sbjct: 398 ELAARELLMVGNGDGTEEDGAYVQLSNIYLAAQKCEDACRIRRMIGDKRIKTKPGCSLIE 457

Query: 445 VTG 447
           V G
Sbjct: 458 VEG 460


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 140/433 (32%), Positives = 225/433 (51%), Gaps = 50/433 (11%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKT 73
           +   S L+  Y+ C      G L+N  + L      +P+ +N +I    R G    AL  
Sbjct: 275 VFVGSALVDMYSKC------GDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSL 328

Query: 74  FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
           F  MH+  + +D +   S L   + V D R    V + + K+G+ +   V +AL+D+YAK
Sbjct: 329 FRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAK 388

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
                 A  +F+++  K+ +   +L++G      +   L L   M  +G+  D   ++A+
Sbjct: 389 RGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAV 448

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           L ACA L+  EFG+QVHA  ++    LG+ + + +SL+ MY KCG +  A +VF+     
Sbjct: 449 LSACAELTVLEFGKQVHANFLKS--GLGSSLSVDNSLVSMYAKCGCIEDANKVFD----- 501

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
              EI +DV+ WT+++  Y +NG  ++                            H G V
Sbjct: 502 -SMEI-QDVITWTALIVGYAQNGRGRD----------------------------HAGLV 531

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G  YF+ M   Y ++PGPEHY+C++DLL R+G+L +A +L+N+M  +       ++W 
Sbjct: 532 EHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQ----PDATVWK 587

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL+AC   G  ELG+ AA    EL+P N   YV+LSNLY+    W+E  + R LMK +G
Sbjct: 588 ALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRG 647

Query: 434 LKKDVGCSWIEVT 446
           + K+ GCSWIE++
Sbjct: 648 VSKEPGCSWIEMS 660



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 184/401 (45%), Gaps = 41/401 (10%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
           + RN + +  +++ + +NG    A++ F  M   GI  + +   S LTA  S+    FG 
Sbjct: 201 DKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGA 260

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           QV   + +SG+ ++VFVGSAL+D+Y+K   + +A  M + + V + V  N+++ G     
Sbjct: 261 QVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQG 320

Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF- 225
           L    L L R+M    +  D FT  ++L   + +        VH+ +++     G + + 
Sbjct: 321 LGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKT----GFEAYK 376

Query: 226 -MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
            + ++L++MY K G    A  VF       E   +KDV+ WTS++     NG ++E ++L
Sbjct: 377 LVNNALVDMYAKRGYFDYAFDVF-------EKMTDKDVISWTSLVTGCVHNGSYEEALRL 429

Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLV 340
           +  M + G  PD++    V+SAC+    ++ G +     VH   L+ G        + LV
Sbjct: 430 FCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQ-----VHANFLKSGLGSSLSVDNSLV 484

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK-------FELGKLAAQ 393
            +  + G ++ A K+ + M         V  W AL+      G+        E G+   Q
Sbjct: 485 SMYAKCGCIEDANKVFDSM-----EIQDVITWTALIVGYAQNGRGRDHAGLVEHGRSYFQ 539

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
              E       +Y +        CM D +G+  +LM+ K L
Sbjct: 540 SMEE-------VYGIKPGPEHYACMIDLLGRSGKLMEAKEL 573



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 132/279 (47%), Gaps = 24/279 (8%)

Query: 85  DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMF 144
           D+  + S+L+    V DAR    V     +  W       + +I  YA    +++A  +F
Sbjct: 43  DSNWVLSNLSKCGRVDDARKLFDVMPDRDECSW-------NTMIGAYANSGRLNEARKLF 95

Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
            E P+++ +  ++L+SGYC        LEL   M   G   + FT  ++LR C+     E
Sbjct: 96  YETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLE 155

Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
            G+Q+HA+ I+      ++ F+ + L++MY KC  + +A  +F LA  +      ++ VL
Sbjct: 156 KGKQIHAHAIKT--QFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDK------RNHVL 207

Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           WT+M+  Y +NG   + I+ +  M   G + ++  F ++++AC        G +     V
Sbjct: 208 WTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQ-----V 262

Query: 325 HDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEM 359
           H   +  G        S LVD+  + G+L  A +++  M
Sbjct: 263 HGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETM 301


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 139/450 (30%), Positives = 240/450 (53%), Gaps = 31/450 (6%)

Query: 1   NVHAHQFETGLLLICLII-----FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFN 55
            +H +  ++GL LI L+      F S+  LP+ + R            +    ++   ++
Sbjct: 36  QLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRR----------AFEDSPQKSATTWS 85

Query: 56  VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
            +IS F +N  P  +L+    M    +  D + L S+  +   +     GK V     K+
Sbjct: 86  SIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKT 145

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G+ + VFVGS+L+D+YAK   I  A  MFDE+P++N V  + ++ GY +       L L 
Sbjct: 146 GYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLF 205

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           +      L  + ++ S ++  CA  +  E GRQ+    I+   +  +  F+ SSL+ +Y 
Sbjct: 206 KEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKS--SFDSSSFVGSSLVSLYS 263

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KCG +  A QVF+    R  G       +W +ML    ++ + ++VI+L++ M ++G KP
Sbjct: 264 KCGDLEGAYQVFDEVPMRNLG-------IWNAMLKACAQHSHTQKVIELFKRMKLSGMKP 316

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
           + + F+ V++ACSH G V  G  YF+ M  + ++EP  +HY+ LVD+L RAG+L++A ++
Sbjct: 317 NFITFLNVLNACSHAGLVDEGKYYFDLM-KESRIEPTDKHYASLVDMLGRAGKLEEALEI 375

Query: 356 INEM-LDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
           +  M +D      + S+WGALL++C      EL   AA K  EL P + G+++ LSN YA
Sbjct: 376 VTNMPID-----PTESVWGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYA 430

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
               +++  + R+L++++G KK+ G SW+E
Sbjct: 431 ADGRFEDAAKARKLLRDRGEKKETGLSWVE 460



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 146/291 (50%), Gaps = 15/291 (5%)

Query: 89  LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
           +C  L +S   +    G Q+  ++ KSG      V + LI+ Y+K  L  D+   F++ P
Sbjct: 18  ICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSP 77

Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
            K++   ++++S + + +L    LE +R M A  L  D   L +  ++C  LS  + G+ 
Sbjct: 78  QKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKS 137

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           VH   ++       DVF+ SSL++MY KCG +  A ++F+    R       +VV W+ M
Sbjct: 138 VHCLSMK--TGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLR-------NVVTWSGM 188

Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
           +  Y + G  +E + L++  L      ++ +F TVIS C+++  ++LG +  + +     
Sbjct: 189 MYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQ-IQGLCIKSS 247

Query: 329 LEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
            +      S LV L  + G+L+ A+++ +E+  R  G     +W A+L AC
Sbjct: 248 FDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLG-----IWNAMLKAC 293


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 148/485 (30%), Positives = 235/485 (48%), Gaps = 57/485 (11%)

Query: 5   HQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRN 64
           H F     +       SRL+  Y+  +   +LG   +    +  R+ + +N +I  +  N
Sbjct: 36  HAFSLKTAIFNHPFVSSRLLALYSDPK-INDLGYARSIFDRIQRRSLIHWNTIIKCYVEN 94

Query: 65  GSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVG 124
                 +  F  + VH    D + L   +     +   + GKQ+     K G+ S VFV 
Sbjct: 95  QFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQ 153

Query: 125 SALIDLYAKLLLIHDAELMFDEIPVK-----------NSVCANALLSGYCEAKLWAGGLE 173
            +L+++Y+K   I  A  +FD +  K           N V  NA+++GY ++  +   LE
Sbjct: 154 GSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALE 213

Query: 174 LVRLMP-------------------------------ALGLDYDHFTLSALLRACAGLSA 202
           L   MP                                LG    H TL ++L A +GL+ 
Sbjct: 214 LFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAV 273

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
              GR +H+YM +    L  D  + +SLIEMY KCG +  AL VF            K V
Sbjct: 274 LGKGRWIHSYMEKNGFEL--DGILGTSLIEMYAKCGCIESALTVFRAIQ-------KKKV 324

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
             WT+++   G +G     + L+  M   G KP+ + F+ V++AC+H G V  G +YF+ 
Sbjct: 325 GHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDM 384

Query: 323 MVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDC 382
           M+++YK+EP  EHY CLVD+LCRAG L++A   I  M      S +  +W +LL    + 
Sbjct: 385 MMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPI----SPNKVIWMSLLGGSRNH 440

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
           GK ++G+ AAQ+ +E+ P  +G Y++LSN+YA   MW+++  +RE+M ++G +KD GCS 
Sbjct: 441 GKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSS 500

Query: 443 IEVTG 447
           +E  G
Sbjct: 501 VEHKG 505



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 126/287 (43%), Gaps = 66/287 (22%)

Query: 66  SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGS 125
           +P ++L+ +     H + L  +  CS   A   V+      Q+ A   K+   +  FV S
Sbjct: 5   TPFHSLQQYL---PHNLHLSLFQTCS---APQEVE------QLHAFSLKTAIFNHPFVSS 52

Query: 126 ALIDLYA--KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGL 183
            L+ LY+  K+  +  A  +FD I  ++ +  N ++  Y E +    G+ L   +    L
Sbjct: 53  RLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL 112

Query: 184 DYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKA 243
             D+FTL  +++ CA L   + G+Q+H   ++     G+DVF+Q SL+ MY KCG +  A
Sbjct: 113 P-DNFTLPCVIKGCARLGVVQEGKQIHGLALK--IGFGSDVFVQGSLVNMYSKCGEIDCA 169

Query: 244 LQVFNLAGHRLEGEINKDVVLWTS------------------------------------ 267
            +VF       +G I+KDVVLW S                                    
Sbjct: 170 RKVF-------DGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWD 222

Query: 268 ------MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
                 M+  Y  NG F + +K++  ML  G++P     V+V+SA S
Sbjct: 223 LVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVS 269


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 137/412 (33%), Positives = 221/412 (53%), Gaps = 14/412 (3%)

Query: 35  NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
           ++ +  N  + +  ++ + ++ +++ +  NG+   AL  F+ M    I L+   + S+L 
Sbjct: 257 SIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALR 316

Query: 95  ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
           A  S  +   GK +       G+   + V +AL+D+Y K     +A  +F+ +P K+ V 
Sbjct: 317 ACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVS 376

Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
              L SGY E  +    L +   M + G   D   L  +L A + L   +    +HA++ 
Sbjct: 377 WAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVS 436

Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
           +      N+ F+ +SLIE+Y KC  +  A +VF       +G   KDVV W+S++  YG 
Sbjct: 437 KS--GFDNNEFIGASLIELYAKCSSIDNANKVF-------KGMRRKDVVTWSSIIAAYGF 487

Query: 275 NGYFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
           +G  +E +KL+  M  +   KP++V FV+++SACSH G ++ GI+ F  MV++Y+L P  
Sbjct: 488 HGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNT 547

Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
           EHY  +VDLL R GELDKA  +INEM  +    +   +WGALL AC      ++G+LAA 
Sbjct: 548 EHYGIMVDLLGRMGELDKALDMINEMPMQ----AGPHVWGALLGACRIHQNIKIGELAAL 603

Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
               LDP++ G Y +LSN+Y     W +  +LR L+KE   KK VG S +E+
Sbjct: 604 NLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEI 655



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 158/327 (48%), Gaps = 24/327 (7%)

Query: 57  VISDFCRNGSPLYALKTFSFMHV-HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
           +I+ + +NGSP  AL  FS M V   +  D   L S+ +A   + D   G+ V   V + 
Sbjct: 177 IITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRR 236

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
           G+ + + + +++++LY K   I  A  +F E+P K+ +  +++++ Y +       L L 
Sbjct: 237 GFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLF 296

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
             M    ++ +  T+ + LRACA  S  E G+ +H   +     L  D+ + ++L++MY 
Sbjct: 297 NEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFEL--DITVSTALMDMYM 354

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KC     A+ +FN    R+     KDVV W  +   Y   G   + + ++  ML  GT+P
Sbjct: 355 KCFSPKNAIDLFN----RMP---KKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRP 407

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDK 351
           D +A V +++A S  G V+  +      +H +  + G ++     + L++L  +   +D 
Sbjct: 408 DAIALVKILAASSELGIVQQAL-----CLHAFVSKSGFDNNEFIGASLIELYAKCSSIDN 462

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSA 378
           A K+      +G     V  W ++++A
Sbjct: 463 ANKVF-----KGMRRKDVVTWSSIIAA 484



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 150/352 (42%), Gaps = 61/352 (17%)

Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
           Q+ +   K G     FV + L  LYA+   +  A  +F+E P K     NALL  Y    
Sbjct: 22  QLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 167 LWAGGLELVRLMPALGLDY---DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
            W   L L   M A  +     D++T+S  L++C+GL   E G+ +H ++ +K   + ND
Sbjct: 82  KWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKK--KIDND 139

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
           +F+ S+LIE+Y KCG +  A++VF            +DVVLWTS++  Y +NG  +  + 
Sbjct: 140 MFVGSALIELYSKCGQMNDAVKVFTEYP-------KQDVVLWTSIITGYEQNGSPELALA 192

Query: 284 LYEAM-LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD- 341
            +  M ++    PD V  V+  SAC+      LG       VH +    G +   CL + 
Sbjct: 193 FFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRS-----VHGFVKRRGFDTKLCLANS 247

Query: 342 --------------------------------LLCRA--GELDKAWKLINEMLDRGHGSS 367
                                           + C A  G    A  L NEM+D+    +
Sbjct: 248 ILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELN 307

Query: 368 SVSMWGALLSACHDCGKFELG----KLAAQKALELDPHNVGIYVMLSNLYAK 415
            V++  A L AC      E G    KLA     ELD   + +   L ++Y K
Sbjct: 308 RVTVISA-LRACASSSNLEEGKHIHKLAVNYGFELD---ITVSTALMDMYMK 355



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 151/338 (44%), Gaps = 27/338 (7%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIF---LDTYALCSSLTASTSVKDARFGKQVQA 110
           +N ++  +   G  +  L  F  M+   I     D Y +  +L + + ++    GK +  
Sbjct: 70  WNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHG 129

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            + K    + +FVGSALI+LY+K   ++DA  +F E P ++ V   ++++GY +     G
Sbjct: 130 FLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQ----NG 185

Query: 171 GLELV-----RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
             EL      R++    +  D  TL +   ACA LS    GR VH ++ R+       + 
Sbjct: 186 SPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRR--GFDTKLC 243

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + +S++ +YGK G +  A  +F    +       KD++ W+SM+  Y  NG     + L+
Sbjct: 244 LANSILNLYGKTGSIRSAANLFREMPY-------KDIISWSSMVACYADNGAETNALNLF 296

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
             M+    + + V  ++ + AC+ +  ++ G ++   +  +Y  E      + L+D+  +
Sbjct: 297 NEMIDKRIELNRVTVISALRACASSSNLEEG-KHIHKLAVNYGFELDITVSTALMDMYMK 355

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
                 A  L N M  +      V  W  L S   + G
Sbjct: 356 CFSPKNAIDLFNRMPKK-----DVVSWAVLFSGYAEIG 388


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 143/453 (31%), Positives = 237/453 (52%), Gaps = 25/453 (5%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
           +H   F+ GL L   +   S L+  Y   R    +G      + L  R+ + +N +++ F
Sbjct: 154 IHGLMFKVGLELDVFV--GSALVNTYLKFRF---VGEAYRVFEELPVRDVVLWNAMVNGF 208

Query: 62  CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
            + G    AL  F  M  +G+    Y +   L+  + + D   G+ V   VTK G+ S V
Sbjct: 209 AQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGV 268

Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV-RLMPA 180
            V +ALID+Y K   + DA  +F+ +   +    N+++S +       G L L  R+M +
Sbjct: 269 VVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGS 328

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI------RKCCNLGNDVFMQSSLIEMY 234
             +  D  T++ +L AC  L+A   GR++H YM+       +  ++ +DV + ++L++MY
Sbjct: 329 SRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMY 388

Query: 235 GKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
            KCG +  A  VF N+          KDV  W  M+  YG +GY  E + ++  M     
Sbjct: 389 AKCGNMRDARMVFVNMR--------EKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQM 440

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            P+E++FV ++SACSH G VK G+ +   M   Y + P  EHY+C++D+LCRAG+L +A+
Sbjct: 441 VPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAY 500

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
            L+  M  +         W +LL+AC      +L ++AA K +EL+P + G YV++SN+Y
Sbjct: 501 DLVLTMPFKADPVG----WRSLLAACRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVY 556

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
                ++E+ + R  MK++ +KK  GCSWIE+ 
Sbjct: 557 GVVGRYEEVLEWRYTMKQQNVKKRPGCSWIELV 589



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 183/401 (45%), Gaps = 26/401 (6%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N   +N +I+ F  N  P  AL  ++ M   GI  D +     + A     D     ++
Sbjct: 95  KNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKI 154

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              + K G    VFVGSAL++ Y K   + +A  +F+E+PV++ V  NA+++G+ +   +
Sbjct: 155 HGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRF 214

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L + R M   G+    +T++ +L   + +   + GR VH ++ +     G  V + +
Sbjct: 215 EEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESG--VVVSN 272

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MYGKC  V  AL VF +       EI  D+  W S++ V+ R G     ++L++ M
Sbjct: 273 ALIDMYGKCKCVGDALSVFEMM-----DEI--DIFSWNSIMSVHERCGDHYGTLRLFDRM 325

Query: 289 LMNG-TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH--------YSCL 339
           + +   +PD V   TV+ AC+H   +  G E   +MV +  L     H         + L
Sbjct: 326 MGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVN-GLAKEESHDVFDDVLLNNAL 384

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALE 397
           +D+  + G +  A  +   M ++      V+ W  +++    H  G   L   +     +
Sbjct: 385 MDMYAKCGNMRDARMVFVNMREK-----DVASWNIMITGYGMHGYGGEALDIFSRMCQAQ 439

Query: 398 LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           + P+ +    +LS       + + +G L E+  + G+   +
Sbjct: 440 MVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSI 480



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 123/282 (43%), Gaps = 19/282 (6%)

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV---KNSVCANALLSG 161
           GK++  H+ K+ +  S    ++LI++Y+K  LI D  L     P    KN    NAL++G
Sbjct: 48  GKELHTHLLKNAFFGSPLAITSLINMYSKCSLI-DHSLRVFNFPTHHNKNVFAYNALIAG 106

Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
           +    L    L L   M  LG+  D FT   ++RAC          ++H  M +    L 
Sbjct: 107 FLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLEL- 165

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
            DVF+ S+L+  Y K   V +A +VF       E    +DVVLW +M+  + + G F+E 
Sbjct: 166 -DVFVGSALVNTYLKFRFVGEAYRVF-------EELPVRDVVLWNAMVNGFAQIGRFEEA 217

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           + ++  M  NG  P       V+S  S  G    G       V     E G    + L+D
Sbjct: 218 LGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNG-RAVHGFVTKMGYESGVVVSNALID 276

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
           +  +   +  A  +  EM+D       +  W +++S    CG
Sbjct: 277 MYGKCKCVGDALSVF-EMMDE----IDIFSWNSIMSVHERCG 313



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 13/202 (6%)

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
           YD  T  A L++CA  +    G+++H ++++     G+ + + +SLI MY KC L+  +L
Sbjct: 27  YDLGTCIATLQSCAHNANLSKGKELHTHLLKNAF-FGSPLAI-TSLINMYSKCSLIDHSL 84

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           +VFN   H      NK+V  + +++  +  N   +  + LY  M   G  PD+  F  VI
Sbjct: 85  RVFNFPTHH-----NKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVI 139

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
            AC         +     ++    LE      S LV+   +   + +A+++  E+  R  
Sbjct: 140 RACGDDDD-GFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVR-- 196

Query: 365 GSSSVSMWGALLSACHDCGKFE 386
               V +W A+++     G+FE
Sbjct: 197 ---DVVLWNAMVNGFAQIGRFE 215


>gi|356541437|ref|XP_003539183.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Glycine max]
          Length = 547

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 233/451 (51%), Gaps = 25/451 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHA   +TG       + ++ L+  Y+ C    +L   T     +  R+ + +N ++S 
Sbjct: 108 QVHAQMLKTGA--DSGTVAKTALLDMYSKC---GSLDEATKVFDEMRHRDVVAWNALLSC 162

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
           F R   P+ A      M    + L  + LCS+L +  S+K    G+QV   V   G    
Sbjct: 163 FLRCDRPVEAFGVLREMGRENVELSEFTLCSALKSCASLKALELGRQVHGLVVCMG-RDL 221

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGYCEAKLWAGGLELVRLM 178
           V + +AL+D Y  +  + DA  +F  +    K+ +  N+++SG   ++ +     ++  +
Sbjct: 222 VVLSTALVDFYTSVGCVDDALKVFYSLKGCWKDDMMYNSMVSGCVRSRRYDEAFRVMGFV 281

Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
                  +   L++ L  C+       G+Q+H   +R       D  + ++L++MY KCG
Sbjct: 282 RP-----NAIALTSALVGCSENLDLWAGKQIHCVAVR--WGFTFDTQLCNALLDMYAKCG 334

Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK--PD 296
            +++AL VF       +G   KDV+ WT M+  YGRNG  +E ++++  M   G+K  P+
Sbjct: 335 RISQALSVF-------DGICEKDVISWTCMIDAYGRNGQGREAVEVFREMREVGSKVLPN 387

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
            V F++V+SAC H+G V+ G   F+ +   Y L+P PEHY+C +D+L RAG +++ W   
Sbjct: 388 SVTFLSVLSACGHSGLVEEGKNCFKLLREKYGLQPDPEHYACYIDILGRAGNIEEVWSAY 447

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
           + M+ +G    +  +W ALL+AC      E G+LAA+  L+L+P+     V++SN YA  
Sbjct: 448 HNMVVQG-TRPTAGVWVALLNACSLNQDVERGELAAKHLLQLEPNKASNIVLVSNFYAAI 506

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
             WD + +LR +M+ KGL K+ G SWI V G
Sbjct: 507 DRWDCVEELRSIMRTKGLAKEAGNSWINVPG 537



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 183/402 (45%), Gaps = 57/402 (14%)

Query: 48  PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG---IFLDTYALCSSLTASTSVK-DAR 103
           P +    N +I+ + R G P+ AL  F  +       +  D Y   S L AS+ ++   +
Sbjct: 45  PSDISQTNSLIASYVRRGDPVSALTLFHSLRRRAHSDVVADAYTFTSILRASSLLRVSGQ 104

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
           FG QV A + K+G  S     +AL+D+Y+K   + +A  +FDE+  ++ V  NALLS + 
Sbjct: 105 FGTQVHAQMLKTGADSGTVAKTALLDMYSKCGSLDEATKVFDEMRHRDVVAWNALLSCFL 164

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
                     ++R M    ++   FTL + L++CA L A E GRQVH  ++  C  +G D
Sbjct: 165 RCDRPVEAFGVLREMGRENVELSEFTLCSALKSCASLKALELGRQVHGLVV--C--MGRD 220

Query: 224 -VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
            V + ++L++ Y   G V  AL+VF    + L+G   KD +++ SM+    R+  + E  
Sbjct: 221 LVVLSTALVDFYTSVGCVDDALKVF----YSLKG-CWKDDMMYNSMVSGCVRSRRYDEAF 275

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACS-----------HTGQVKLGIEYFEWM-------- 323
           +     +M   +P+ +A  + +  CS           H   V+ G  +   +        
Sbjct: 276 R-----VMGFVRPNAIALTSALVGCSENLDLWAGKQIHCVAVRWGFTFDTQLCNALLDMY 330

Query: 324 -----------VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHG--SSSVS 370
                      V D   E     ++C++D   R G+  +A ++  EM + G     +SV+
Sbjct: 331 AKCGRISQALSVFDGICEKDVISWTCMIDAYGRNGQGREAVEVFREMREVGSKVLPNSVT 390

Query: 371 MWGALLSACHDCGKFELGK-----LAAQKALELDPHNVGIYV 407
              ++LSAC   G  E GK     L  +  L+ DP +   Y+
Sbjct: 391 FL-SVLSACGHSGLVEEGKNCFKLLREKYGLQPDPEHYACYI 431


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 136/411 (33%), Positives = 218/411 (53%), Gaps = 46/411 (11%)

Query: 71  LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDL 130
           L+ ++ MH  G+  D + L   L +   +     G+ V     + G     +VG++LID+
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 131 YAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMP----------- 179
           Y K  +I DA  +FD++ V++    NAL++GY +        +L   M            
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 180 -----------ALGLDYDHF------------TLSALLRACAGLSAAEFGRQVHAYMIRK 216
                      ALGL +D              T+ ++L ACA  +A E GR++H +    
Sbjct: 212 SGYTQNGFAEQALGL-FDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGI 270

Query: 217 CCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNG 276
             +L + V  Q++L  MY KC  + +A   F++          K+++ W +M+  Y  +G
Sbjct: 271 GLHLNSSV--QTALAGMYAKCYSLVEARCCFDMIAQN-----GKNLIAWNTMITAYASHG 323

Query: 277 YFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY 336
              E + ++E ML  G +PD V F+ ++S CSH+G +  G+ +F  M   + +EP  EHY
Sbjct: 324 CGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHY 383

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
           +C+VDLL RAG L +A +LI++M  +    +  S+WGALL+AC      E+ +LAA++  
Sbjct: 384 ACVVDLLGRAGRLVEAKELISQMPMQ----AGPSVWGALLAACRSHRNLEIAELAARRLF 439

Query: 397 ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
            L+P N G YV+LSNLYA+  MW+E+ +LR L+K +G+KK  GCSWIE+ G
Sbjct: 440 VLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEING 490



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 4/167 (2%)

Query: 36  LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT--YALCSSL 93
           +G   +  + +  RN + +  +IS + +NG    AL  F  M   G  +      + S L
Sbjct: 189 IGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVL 248

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--KN 151
            A         G+++       G   +  V +AL  +YAK   + +A   FD I    KN
Sbjct: 249 PACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKN 308

Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
            +  N +++ Y         + +   M   G+  D  T   LL  C+
Sbjct: 309 LIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCS 355


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 202/346 (58%), Gaps = 14/346 (4%)

Query: 101 DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
           D R G+ + + V +SG+ S ++V ++L+ LYA    +  A  +FD++P K+ V  N++++
Sbjct: 3   DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 62

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           G+ E       L L   M + G+  D FT+ +LL ACA + A   G++VH YMI+    L
Sbjct: 63  GFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK--VGL 120

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             ++   + L+++Y +CG V +A  +F+         ++K+ V WTS++     NG+ KE
Sbjct: 121 TRNLHSSNVLLDLYARCGRVEEAKTLFDEM-------VDKNSVSWTSLIVGLAVNGFGKE 173

Query: 281 VIKLYEAM-LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
            I+L++ M    G  P E+ FV ++ ACSH G VK G EYF  M  +YK+EP  EH+ C+
Sbjct: 174 AIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCM 233

Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
           VDLL RAG++ KA++ I  M  +     +V +W  LL AC   G  +L + A  + L+L+
Sbjct: 234 VDLLARAGQVKKAYEYIKSMPMQ----PNVVIWRTLLGACTVHGDSDLAEFARIQILQLE 289

Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           P++ G YV+LSN+YA    W ++ ++R+ M   G+KK  G S +EV
Sbjct: 290 PNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 335



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 117/256 (45%), Gaps = 11/256 (4%)

Query: 16  LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFS 75
           LI  Q+ L+  Y  C    ++ +       +  ++ + +N VI+ F  NG P  AL  ++
Sbjct: 22  LIYVQNSLLHLYANC---GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYT 78

Query: 76  FMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL 135
            M+  GI  D + + S L+A   +     GK+V  ++ K G   ++   + L+DLYA+  
Sbjct: 79  EMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCG 138

Query: 136 LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-GLDYDHFTLSALL 194
            + +A+ +FDE+  KNSV   +L+ G          +EL + M +  GL     T   +L
Sbjct: 139 RVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGIL 198

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            AC+     + G +    M R+   +   +     ++++  + G V KA +         
Sbjct: 199 YACSHCGMVKEGFEYFRRM-REEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIK------ 251

Query: 255 EGEINKDVVLWTSMLG 270
              +  +VV+W ++LG
Sbjct: 252 SMPMQPNVVIWRTLLG 267


>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 151/482 (31%), Positives = 236/482 (48%), Gaps = 51/482 (10%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLT-NCLKFLNPRNPL--PFNVV 57
             HA  F TGL      +  SRL+     C H    G+LT  C  F    +P     N +
Sbjct: 23  QAHAQVFTTGLDTNTFAL--SRLL---AFCSHPYQ-GSLTYACRVFERIHHPTLCICNTI 76

Query: 58  ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
           I  F  NG+       F+ M  +G+  D Y +   L A  +++D   GK V  + +K G 
Sbjct: 77  IKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGL 136

Query: 118 LSSVFVGSALIDLY-------------------------------AKLLLIHDAELMFDE 146
           +  +FVG++L+ +Y                               AK+  +  A L FDE
Sbjct: 137 VFDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDE 196

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFG 206
            P K+     A++SGY +   +  GL L RL+    +  D     ++L ACA L A + G
Sbjct: 197 APEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIG 256

Query: 207 RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWT 266
             +H Y+ RK  +L   + + +SL++MY KCG +  A ++F+    R       D+V W 
Sbjct: 257 IWIHRYLNRKTVSL--SIRLSTSLLDMYAKCGNLELAKRLFDSMPER-------DIVCWN 307

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +M+     +G     +K++  M   G KPD++ F+ V +ACS++G    G++  + M   
Sbjct: 308 AMISGLAMHGDGASALKMFSEMEKTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSL 367

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG-HGSSSVSMWGALLSACHDCGKF 385
           Y++EP  EHY CLVDLL RAG   +A  +I  +     +GS     W A LSAC + G+ 
Sbjct: 368 YEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQA 427

Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +L + AA++ L L+ H+ G+YV+LSNLYA      +  ++R +M+ KG+ K  GCS +E+
Sbjct: 428 QLAERAAKRLLRLENHS-GVYVLLSNLYAASGKHSDARRVRNMMRNKGVDKAPGCSSVEI 486

Query: 446 TG 447
            G
Sbjct: 487 DG 488


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 204/392 (52%), Gaps = 13/392 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N ++  F  + +   AL+ FS MH  G   D     ++  A+  +   + GKQ+ A V 
Sbjct: 468 WNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVI 527

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           K  +   +FV S ++D+Y K   +  A  +F++IP  + V    ++SG  E       L 
Sbjct: 528 KMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALF 587

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
               M   G+  D +T + L++AC+ L+A E G+Q+HA +++  C    D F+ +SL++M
Sbjct: 588 TYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAF--DPFVMTSLVDM 645

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +  A  +F     R        V LW +M+    ++G  +E +  +  M   G 
Sbjct: 646 YAKCGNIEDAYGLFRRMNTR-------SVALWNAMIVGLAQHGNAEEALNFFNEMKSRGV 698

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            PD V F+ V+SACSH+G      + F+ M   Y +EP  EHYSCLVD L RAG + +A 
Sbjct: 699 TPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAE 758

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           K+++ M       +S +M+  LL+AC   G  E G+  A+K   +DP +   YV+LSN+Y
Sbjct: 759 KVVSSM----PFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIY 814

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           A    W+     R +MK   +KK+ G SWI++
Sbjct: 815 AAANQWENAVSARNMMKRVNVKKEPGFSWIDM 846



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 179/390 (45%), Gaps = 18/390 (4%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDAR-FGKQVQA 110
           + +N VIS   R+G    +L+ F  +   G+  D + + S L A +S++++   G+QV  
Sbjct: 364 ISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHT 423

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
              K+G +   FV +ALID+Y+K   + +AEL+F      +    NA++ G+  +  +  
Sbjct: 424 CALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYRE 483

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            L L  LM   G   D  T +   +A   L   + G+Q+HA +I+       D+F+ S +
Sbjct: 484 ALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIK--MRFHYDLFVISGI 541

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           ++MY KCG +  A +VFN          + D V WT+++     NG  ++ +  Y  M +
Sbjct: 542 LDMYLKCGEMKSARKVFNQIP-------SPDDVAWTTVISGCVENGEEEQALFTYHQMRL 594

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G +PDE  F T++ ACS    ++ G +     +        P   + LVD+  + G ++
Sbjct: 595 AGVQPDEYTFATLVKACSLLTALEQG-KQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIE 653

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
            A+ L   M  R     SV++W A++   A H   +  L      K+  + P  V    +
Sbjct: 654 DAYGLFRRMNTR-----SVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGV 708

Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
           LS         D       + K  G++ ++
Sbjct: 709 LSACSHSGLTSDAYKNFDSMQKTYGVEPEI 738



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 154/334 (46%), Gaps = 16/334 (4%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N  +S + + G    A+  F  M    +  D+      L+   S+     GKQ+   V 
Sbjct: 265 WNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVV 324

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           + GW   V V ++ I++Y K   ++ A  MF ++   + +  N ++SG   + L    L 
Sbjct: 325 RFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLR 384

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAE-FGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
           L   +   GL  D FT++++LRAC+ L  +   GRQVH   ++    L  D F+ ++LI+
Sbjct: 385 LFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVL--DSFVSTALID 442

Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
           +Y K G + +A  +F    H  +G    D+  W +M+  +  +  ++E ++L+  M   G
Sbjct: 443 VYSKGGKMEEAELLF----HNQDG---FDLASWNAMMHGFTVSDNYREALRLFSLMHERG 495

Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
            K D++ F     A     +++ G +    +V   +        S ++D+  + GE+  A
Sbjct: 496 EKADQITFANAAKAAGCLVRLQQG-KQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSA 554

Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            K+ N++      S     W  ++S C + G+ E
Sbjct: 555 RKVFNQI-----PSPDDVAWTTVISGCVENGEEE 583



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 17/222 (7%)

Query: 91  SSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV- 149
           S L  + +  D   GK+  A +  SG     +V + LI +YAK   +  A  +FD  P  
Sbjct: 18  SILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQS 77

Query: 150 -KNSVCANALLSGYC------EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
            ++ V  NA+L+ Y       + +       + RL+    +     TLS L + C    +
Sbjct: 78  DRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGS 137

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
                 +  Y ++    L  DVF+  +L+ +Y K   + +A  +F+    R       DV
Sbjct: 138 PSASEALQGYAVK--IGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR-------DV 188

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           VLW  M+  Y   G   EV+ L+ A   +G +PD V+  T++
Sbjct: 189 VLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL 230



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 133/346 (38%), Gaps = 58/346 (16%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK------DA 102
           R+ + +N +++ +   G      KT    H+  +   +  L +  T S   K        
Sbjct: 79  RDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSP 138

Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
              + +Q +  K G    VFV  AL+++YAK   I +A ++FD +PV++ V  N ++  Y
Sbjct: 139 SASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAY 198

Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
            E      G E++ L  A       F  S L   C  +     G                
Sbjct: 199 VE---MGAGDEVLGLFSA-------FHRSGLRPDCVSVRTILMG---------------- 232

Query: 223 DVFMQSSLIEMYGKCGLVTKAL-QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
                       GK  +  + L QV   A      + + DV +W   L  Y + G   E 
Sbjct: 233 -----------VGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEA 281

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----S 337
           +  +  M+ +    D + ++ ++S  +    ++LG +     +H   +  G + +    +
Sbjct: 282 VDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQ-----IHGAVVRFGWDQFVSVAN 336

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
             +++  +AG ++ A ++  +M +       +  W  ++S C   G
Sbjct: 337 SAINMYVKAGSVNYARRMFGQMKE-----VDLISWNTVISGCARSG 377


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 125/391 (31%), Positives = 213/391 (54%), Gaps = 13/391 (3%)

Query: 57  VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
           +IS + ++     A + F  +    +  + Y+L S L A T++    FGKQ+  H  K G
Sbjct: 335 MISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIG 394

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
             S +FVG+AL+D YAK   +  +  +F  +   N V  N ++ G+ ++ L    L +  
Sbjct: 395 HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFC 454

Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
            M A  +     T S++LRACA  ++     Q+H  + +   N  ND  + +SLI+ Y K
Sbjct: 455 EMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFN--NDTVIGNSLIDTYAK 512

Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
           CG +  AL+VF    H +E    +D++ W +++  Y  +G   + ++L++ M  +  + +
Sbjct: 513 CGYIRDALKVFQ---HLME----RDIISWNAIISGYALHGQAADALELFDRMNKSNVESN 565

Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLI 356
           ++ FV ++S CS TG V  G+  F+ M  D+ ++P  EHY+C+V LL RAG L+ A + I
Sbjct: 566 DITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFI 625

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKF 416
            ++      + S  +W ALLS+C       LG+ +A+K LE++P +   YV+LSN+YA  
Sbjct: 626 GDI----PSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAA 681

Query: 417 CMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
              D++  LR+ M+  G++K  G SW+E+ G
Sbjct: 682 GSLDQVALLRKSMRNIGVRKVPGLSWVEIKG 712



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 166/336 (49%), Gaps = 29/336 (8%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           ++ + +  ++S +  N  P  A + FS M V G   + +AL S L A+  +     GK +
Sbjct: 226 KDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGI 285

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                K+   +   VG AL+D+YAK   I DA L F+ IP  + +  + ++S Y ++   
Sbjct: 286 HGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQN 345

Query: 169 AGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
               EL +RLM +  L  + ++LS++L+AC  +   +FG+Q+H + I+      +D+F+ 
Sbjct: 346 EQAFELFLRLMRSSVLP-NEYSLSSVLQACTNMVQLDFGKQIHNHAIK--IGHESDLFVG 402

Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
           ++L++ Y KC  +  +L++F  +  R   E++     W +++  + ++G  +E + ++  
Sbjct: 403 NALMDFYAKCNDMDSSLKIF--SSLRDANEVS-----WNTIVVGFSQSGLGEEALSVFCE 455

Query: 288 MLMNGTKPDEVAFVTVISACS------HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
           M        +V + +V+ AC+      H GQ+   IE   +  +D  +       + L+D
Sbjct: 456 MQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFN-NDTVIG------NSLID 508

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
              + G +  A K+   +++R      +  W A++S
Sbjct: 509 TYAKCGYIRDALKVFQHLMER-----DIISWNAIIS 539



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 130/281 (46%), Gaps = 17/281 (6%)

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS--SVFVGSALIDLYAKLLLIHDAE 141
           +D++A    L    +  DAR G+ V  HV + G +    +F  + L+++Y KL  +  A 
Sbjct: 57  VDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASAR 116

Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLS 201
            +FD +P +N V    L+  + +   +     L R +   G + + F L+ +L+    + 
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 202 AAEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           AA     VH+   +    LG+D   F+ S LI+ Y  C LV+ A  VFN       G + 
Sbjct: 177 AAGLAGGVHSCAWK----LGHDHNAFVGSGLIDAYSLCSLVSDAEHVFN-------GIVR 225

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           KD V+WT+M+  Y  N   +   +++  M ++G KP+  A  +V+ A      V LG   
Sbjct: 226 KDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGI 285

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
               +     +  P     L+D+  + G++  A +L  EM+
Sbjct: 286 HGCAIKTLN-DTEPHVGGALLDMYAKCGDIKDA-RLAFEMI 324



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 153/333 (45%), Gaps = 21/333 (6%)

Query: 36  LGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
           LG L +  +  +    RN + F  ++    + G    A   F  +   G  ++ + L + 
Sbjct: 109 LGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTM 168

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L  + ++  A     V +   K G   + FVGS LID Y+   L+ DAE +F+ I  K++
Sbjct: 169 LKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDA 228

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAY 212
           V   A++S Y E         +   M   G   + F L+++L+A   L +   G+ +H  
Sbjct: 229 VVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGC 288

Query: 213 MIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVY 272
            I+   +   +  +  +L++MY KCG +  A   F +  +        DV+L + M+  Y
Sbjct: 289 AIKTLND--TEPHVGGALLDMYAKCGDIKDARLAFEMIPY-------DDVILLSFMISRY 339

Query: 273 GRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG 332
            ++   ++  +L+  ++ +   P+E +  +V+ AC++  Q+  G +     +H++ ++ G
Sbjct: 340 AQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQ-----IHNHAIKIG 394

Query: 333 PEHY----SCLVDLLCRAGELDKAWKLINEMLD 361
            E      + L+D   +  ++D + K+ + + D
Sbjct: 395 HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRD 427



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 132/342 (38%), Gaps = 49/342 (14%)

Query: 23  LMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI 82
           LM  Y  C    ++ +       L   N + +N ++  F ++G    AL  F  M    +
Sbjct: 405 LMDFYAKC---NDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQM 461

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
                   S L A  S    R   Q+   + KS + +   +G++LID YAK   I DA  
Sbjct: 462 PCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALK 521

Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
           +F  +  ++ +  NA++SGY      A  LEL   M    ++ +  T  ALL  C+    
Sbjct: 522 VFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCS---- 577

Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
                                              GLV   L +F+    R++  I   +
Sbjct: 578 ---------------------------------STGLVNHGLSLFD--SMRIDHGIKPSM 602

Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEW 322
             +T ++ + GR G   + ++    +    + P  + +  ++S+C     V LG    E 
Sbjct: 603 EHYTCIVRLLGRAGRLNDALQFIGDI---PSAPSAMVWRALLSSCIIHKNVALGRFSAEK 659

Query: 323 MVHDYKLEPGPE-HYSCLVDLLCRAGELDKAWKLINEMLDRG 363
           ++   ++EP  E  Y  L ++   AG LD+   L   M + G
Sbjct: 660 IL---EIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIG 698


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 143/429 (33%), Positives = 224/429 (52%), Gaps = 52/429 (12%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +   G    AL     M   GI  D     + ++A  +V   + GKQV A++ 
Sbjct: 257 WNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYIL 316

Query: 114 KSGWLSS----VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC------ 163
           K+    +    + V +ALI LY K   + +A  +F  +PV+N +  NA+LSGY       
Sbjct: 317 KNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRME 376

Query: 164 EAK----------------LWAG---------GLELVRLMPALGLDYDHFTLSALLRACA 198
           EAK                + +G         GL+L + M   G +   F  +  L AC+
Sbjct: 377 EAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACS 436

Query: 199 GLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
            L A E GRQ+HA ++    +LG  + + + +++I MY KCG+V  A  VF         
Sbjct: 437 VLGALENGRQLHAQLV----HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP----- 487

Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
             + D+V W SM+   G++G+  + I+L++ ML  G  PD + F+TV++ACSH G V+ G
Sbjct: 488 --SVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKG 545

Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
             YF  M+  Y + P  +HY+ +VDL CRAG    A  +I+ M  +        +W ALL
Sbjct: 546 RHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK----PGAPVWEALL 601

Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
           + C   G  +LG  AA++  +L P N G YV+LSN+YA    W+E+ ++R+LM+++ ++K
Sbjct: 602 AGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRK 661

Query: 437 DVGCSWIEV 445
           +  CSWIEV
Sbjct: 662 EPACSWIEV 670



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 149/344 (43%), Gaps = 67/344 (19%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAST-SVKDARFGKQ 107
           R+ + +N +I+ +  NG    AL+ F  M       D +   S L+A    V + +   Q
Sbjct: 110 RDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ 169

Query: 108 VQAHVTKSGW-LSSVFVGSALIDLYAKLL--------LIHDAELMFDEIPVKNSV----- 153
           +   V K+G    S  V +AL+ +Y K           +  A  +FDE+P ++ +     
Sbjct: 170 MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTM 229

Query: 154 --------------------------CANALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
                                       NA++SGY     +   L L R M  LG+ +D 
Sbjct: 230 ITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDD 289

Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQ 245
            T + ++ ACA + + + G+QVHAY+++   N  +   + + ++LI +Y K   V +A +
Sbjct: 290 ITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARK 349

Query: 246 VFNLAGHR--------LEGEIN----------------KDVVLWTSMLGVYGRNGYFKEV 281
           +F     R        L G +N                K+++  T M+    +NG+  E 
Sbjct: 350 IFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEG 409

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
           +KL++ M ++G +P + AF   ++ACS  G ++ G +    +VH
Sbjct: 410 LKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVH 453



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 135/333 (40%), Gaps = 46/333 (13%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           +N L   V+IS   +NG     LK F  M + G     +A   +LTA + +     G+Q+
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
            A +   G+ SS+ VG+A+I +YAK  ++  AE +F  +P  + V  N++++   +    
Sbjct: 448 HAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHG 507

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              +EL   M   G+  D  T   +L AC+     E GR                    +
Sbjct: 508 VKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYF-----------------N 550

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           S++E YG          +     H            +  M+ ++ R G F     + ++M
Sbjct: 551 SMLESYG----------ITPCEDH------------YARMVDLFCRAGMFSYARIVIDSM 588

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE-HYSCLVDLLCRAG 347
               +KP    +  +++ C   G + LGIE  E +   +KL P  +  Y  L ++    G
Sbjct: 589 ---PSKPGAPVWEALLAGCRIHGNMDLGIEAAEQL---FKLMPQNDGTYVLLSNIYADVG 642

Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
             ++  K+   M D+         W  + +  H
Sbjct: 643 RWNEVAKVRKLMRDQAVRKEPACSWIEVENKVH 675



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 141/359 (39%), Gaps = 83/359 (23%)

Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP--------------- 148
             + V AH+  SG+       + L+++Y K   +  A  +F+EIP               
Sbjct: 31  LARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYC 90

Query: 149 ------------------VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTL 190
                             +++SV  NA+++GY         LEL R M       D FT 
Sbjct: 91  ALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTF 150

Query: 191 SALLRA---------------CA------GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
           +++L A               CA      G  ++     + +  +++   LG       S
Sbjct: 151 TSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVS 210

Query: 230 LIEMYGK---------CGLVTKALQVFNLAGHR--LEGEINKDVVLWTSMLGVYGRNGYF 278
             +++ +           ++T  ++  +L G R   E  +      W +M+  Y   G F
Sbjct: 211 ARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCF 270

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY--KLEPGPEHY 336
           +E + L   M   G + D++ + T+ISAC++ G  ++G +     VH Y  K E  P H 
Sbjct: 271 QEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQ-----VHAYILKNELNPNHS 325

Query: 337 SC------LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
            C      L+ L C+  ++D+A K+   M  R     ++  W A+LS   + G+ E  K
Sbjct: 326 FCLSVSNALITLYCKNNKVDEARKIFYAMPVR-----NIITWNAILSGYVNAGRMEEAK 379


>gi|413954745|gb|AFW87394.1| hypothetical protein ZEAMMB73_238054 [Zea mays]
          Length = 430

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 129/363 (35%), Positives = 201/363 (55%), Gaps = 17/363 (4%)

Query: 86  TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
           TYAL   L    + +D R GK++ A +  +G+  S +V + L+  YAK+  +  A+ MFD
Sbjct: 37  TYALL--LQECVNRRDPRLGKRIHARMVATGFRCSAYVATKLLIFYAKIGHLGCAQKMFD 94

Query: 146 EIPVKNSVCANALLSGYCEAKLWAG--GLELVRLMPALGLDYDHFTLSALLRACAGLSAA 203
            +P ++ V  NA++SG       A    +EL   M A GL  D FT +++L ACA L+A 
Sbjct: 95  GMPQRSVVAWNAMISGCARGSGEAQERAVELFSAMRAEGLAPDQFTFASVLCACARLAAL 154

Query: 204 EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVV 263
             GR+VH   ++   ++G +VF  S+L++MY KC     A +VF  A  R       +V 
Sbjct: 155 GHGRRVHGVAVKS--DVGGNVFANSALVDMYLKCSCPEDARRVFAAAPER-------NVT 205

Query: 264 LWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
           +WT+++  +G+ G   E +  ++ M  +G +P++V F+ V+SAC+H G V  G+  F  M
Sbjct: 206 MWTAVISGHGQQGCVDEALAFFDRMAASGFRPNDVTFLAVLSACAHGGLVGEGLRRFSSM 265

Query: 324 VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD-C 382
             DY L P   HY+ +VD+L R G L  A++L+  + D    S    +WGA+L AC    
Sbjct: 266 SSDYGLTPRGPHYAAVVDMLARVGRLHDAYELVKNLPDCQEHS---VVWGAILGACRKHG 322

Query: 383 GKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSW 442
           G  EL +LAA++   L P N G Y++++N YA   MW+ +    E M+  GL+KD   S 
Sbjct: 323 GDVELVELAARRFFRLQPGNAGKYLVVANTYAAREMWESVAGAHEAMRALGLQKDRAWSS 382

Query: 443 IEV 445
           +EV
Sbjct: 383 VEV 385



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 124/294 (42%), Gaps = 29/294 (9%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            +HA    TG    C     ++L++ Y    H   LG        +  R+ + +N +IS 
Sbjct: 56  RIHARMVATGFR--CSAYVATKLLIFYAKIGH---LGCAQKMFDGMPQRSVVAWNAMISG 110

Query: 61  FCRNGS---PLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
            C  GS      A++ FS M   G+  D +   S L A   +     G++V     KS  
Sbjct: 111 -CARGSGEAQERAVELFSAMRAEGLAPDQFTFASVLCACARLAALGHGRRVHGVAVKSDV 169

Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
             +VF  SAL+D+Y K     DA  +F   P +N     A++SG+ +       L     
Sbjct: 170 GGNVFANSALVDMYLKCSCPEDARRVFAAAPERNVTMWTAVISGHGQQGCVDEALAFFDR 229

Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ------SSLI 231
           M A G   +  T  A+L ACA       G       +R+  ++ +D  +       ++++
Sbjct: 230 MAASGFRPNDVTFLAVLSACAHGGLVGEG-------LRRFSSMSSDYGLTPRGPHYAAVV 282

Query: 232 EMYGKCGLVTKALQ-VFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
           +M  + G +  A + V NL       +  +  V+W ++LG   ++G   E+++L
Sbjct: 283 DMLARVGRLHDAYELVKNLP------DCQEHSVVWGAILGACRKHGGDVELVEL 330


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 132/431 (30%), Positives = 231/431 (53%), Gaps = 16/431 (3%)

Query: 15  CLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF 74
           C +   + L+  Y+ C    +LG L      ++ R+ + +NV+IS    N     AL+ F
Sbjct: 267 CNVFVNNALLDFYSKC---DSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLF 323

Query: 75  SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
             M   G    T    S L+ + ++   + G+Q+ A +   G     FVG+ALID+Y+K 
Sbjct: 324 RDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKC 383

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
            ++  A+ +F     K ++   AL++G  +       L+L   M   GL  D  T S+++
Sbjct: 384 GMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIM 443

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
           ++ + L+    GRQ+HAY+ +        VF  S+L++MY KCG + +A++ FN      
Sbjct: 444 KSSSSLAVIGIGRQLHAYLTKS--GHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPE-- 499

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
                K+ + W +++  Y + G  K  I+++++ML  G  PD V F++V++AC H G  +
Sbjct: 500 -----KNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAE 554

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
             ++YF+ M + Y + P  EHYSC++D L RAG  DK  K+I+EM           +W +
Sbjct: 555 ECMKYFDLMRYYYSMSPWKEHYSCVIDTLGRAGCFDKIQKVIDEM----PFEDDPIIWSS 610

Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
           +L +C   G  +L  +AA+K   + P +   YV+LSN+YAK   W+   +++++M+++G+
Sbjct: 611 ILHSCRIYGNQDLATVAAEKLFTMVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGV 670

Query: 435 KKDVGCSWIEV 445
           KK+ G SW+E+
Sbjct: 671 KKESGNSWVEI 681



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 162/330 (49%), Gaps = 15/330 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N +I    R G    AL+ F+ M   G+    +   S LT +T + D   G+Q+
Sbjct: 197 RDSITYNAMIMGCSRQGRHGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQI 256

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
                ++    +VFV +AL+D Y+K   + D + +FDE+  +++V  N ++S     +  
Sbjct: 257 HGLFVRANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCG 316

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
              L+L R M  LG D      ++LL     L   + GRQ+HA +I     L +  F+ +
Sbjct: 317 GMALQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLED--FVGN 374

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           +LI+MY KCG++  A  +F           +K  + WT+++    +NG  +E ++L+  M
Sbjct: 375 ALIDMYSKCGMLDAAKTIFAYKS-------DKTAISWTALITGCVQNGQNEEALQLFCDM 427

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
              G  PD     +++ + S    + +G +   ++     + P     S L+D+  + G 
Sbjct: 428 RRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHM-PSVFSGSALLDMYAKCGC 486

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
           LD+A +  NEM ++    +S++ W A++SA
Sbjct: 487 LDEAIRTFNEMPEK----NSIT-WNAVISA 511



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 129/276 (46%), Gaps = 17/276 (6%)

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
           VTK G+ +SV V + L+D Y K   I  A  +F E+P ++S+  NA++ G          
Sbjct: 159 VTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEA 218

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           LEL   M   G+D  HFT S+LL    G+     GRQ+H   +R   N   +VF+ ++L+
Sbjct: 219 LELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVR--ANPSCNVFVNNALL 276

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           + Y KC  +    Q+F+    R       D V +  M+     N      ++L+  M   
Sbjct: 277 DFYSKCDSLGDLKQLFDEMSER-------DNVSYNVMISACSWNRCGGMALQLFRDMQTL 329

Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIE-YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
           G     + + +++S       +K+G + + + ++H   LE    +   L+D+  + G LD
Sbjct: 330 GFDRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGN--ALIDMYSKCGMLD 387

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
            A  +     D+    +++S W AL++ C   G+ E
Sbjct: 388 AAKTIFAYKSDK----TAIS-WTALITGCVQNGQNE 418


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  217 bits (553), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 211/392 (53%), Gaps = 12/392 (3%)

Query: 54  FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
           +N +IS +  NG    ++  F+ +   G++ ++  L + +   +        + +   V 
Sbjct: 281 YNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVL 340

Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
           KSG+ ++  V +A+  L+ +L  +  A   FD +P K     NA++SGY +  L    + 
Sbjct: 341 KSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVA 400

Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
           L   M  L +  +  T+S+ L ACA L A   G+ +H  +  +  +L  +V++ ++LI+M
Sbjct: 401 LFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEE--DLEPNVYVMTALIDM 458

Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
           Y KCG +++A ++FN          NK+VV W +M+  YG +G   E +KLY+ ML    
Sbjct: 459 YAKCGSISEARRIFNTMD-------NKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHL 511

Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
            P    F++V+ ACSH G V+ G + F  M  DY + PG EH +C+VDLL RAG+L +A+
Sbjct: 512 LPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAF 571

Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
           +LI+E      G     +WGALL AC      +L KLA+QK  ELDP N G YV+LSNL+
Sbjct: 572 ELISEFPKSAVGP---GVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLH 628

Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
                + E   +R+  K + L K  G + IE+
Sbjct: 629 TSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEI 660



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 148/328 (45%), Gaps = 16/328 (4%)

Query: 51  PLPFNVVISDFCRNGSPLYALKTFSFMHVHG-IFLDTYALCSSLTASTSVKDARFGKQVQ 109
           P P  V+ +      S   A+++F+ M   G +  D   L S L A+  V D   G+ V 
Sbjct: 176 PSPDTVLWNTLLAGLSGSEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVH 235

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
           +   K G      V + LI LY+K   +  A  +FD +   + V  NAL+SGY    +  
Sbjct: 236 SFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVG 295

Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
             + L   +  LGL  +  TL AL+   +        + +H ++++      + V   ++
Sbjct: 296 SSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPV--STA 353

Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
           +  ++ +   +  A + F+           K +  W +M+  Y +NG  +  + L+E M+
Sbjct: 354 ITTLHCRLNDMESARKAFDTMP-------EKTMESWNAMISGYAQNGLTEMAVALFEQMV 406

Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
               +P+ +   + +SAC+  G + LG ++   ++ +  LEP     + L+D+  + G +
Sbjct: 407 KLNVRPNPITISSTLSACAQLGALSLG-KWLHRIITEEDLEPNVYVMTALIDMYAKCGSI 465

Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLS 377
            +A ++ N M ++     +V  W A+++
Sbjct: 466 SEARRIFNTMDNK-----NVVSWNAMIA 488



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 28/296 (9%)

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
            FV SAL  LY  L  +  A  +FD +P  ++V  N LL+G   ++         R++  
Sbjct: 149 TFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVES---FARMVCD 205

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
             +  D  TL+++L A A ++    GR VH++  +  C L     + + LI +Y KCG V
Sbjct: 206 GSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEK--CGLAEHEHVLTGLISLYSKCGDV 263

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
             A  +F++           D+V + +++  Y  NG     + L+  ++  G  P+    
Sbjct: 264 ESARCLFDMME-------KPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTL 316

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLVDLLCRAGELDKAWKLI 356
           V +I   S       G +     +H + L+ G    S     +  L CR  +++ A K  
Sbjct: 317 VALIPVHS-----PFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAF 371

Query: 357 NEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD--PHNVGIYVMLS 410
           + M ++     ++  W A++S     G  E+     ++ ++L+  P+ + I   LS
Sbjct: 372 DTMPEK-----TMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLS 422


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 144/479 (30%), Positives = 231/479 (48%), Gaps = 54/479 (11%)

Query: 2   VHAHQFETGLLLICLIIFQSRLMLP--YTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVIS 59
           +HAH       ++ L + QS  ++      C +  ++   T   + L   N   +N +I 
Sbjct: 26  IHAH-------IVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIR 78

Query: 60  DFCRNGSPLYALKTFSFM-HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
            +  N     A+  F+ M        D +     + +   +   R G+QV AHV K G  
Sbjct: 79  TYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPK 138

Query: 119 SSVFVGSALIDLYAK-------------------------------LLLIHDAELMFDEI 147
           +     +ALID+Y K                               L  +  A  +FDE+
Sbjct: 139 THAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEM 198

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
           P +  V    +++GY     +A  L + R M  +G++ D  ++ ++L ACA L A E G+
Sbjct: 199 PCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGK 258

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
            +H Y  +        VF  ++L+EMY KCG + +A  +FN         I KDV+ W++
Sbjct: 259 WIHKYSEKSGFLKNAGVF--NALVEMYAKCGCIDEAWGLFNQM-------IEKDVISWST 309

Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
           M+G    +G     I+++E M   G  P+ V FV V+SAC+H G    G+ YF+ M  DY
Sbjct: 310 MIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDY 369

Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
            LEP  EHY CLVDLL R+G++++A   I +M  +    +    W +LLS+C      E+
Sbjct: 370 HLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRT----WNSLLSSCRIHHNLEI 425

Query: 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
             +A ++ L+L+P   G YV+L+N+YAK   W+ +  +R+L++ K +KK  GCS IEV 
Sbjct: 426 AVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVN 484



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 150/310 (48%), Gaps = 45/310 (14%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++ AH+ K     S F+ + ++DL   L  +  A ++F ++   N    NA++  Y   
Sbjct: 24  KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHN 83

Query: 166 KLWAGGLELV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG--N 222
                 + +  +++       D FT   ++++CAGL     G+QVHA++    C  G   
Sbjct: 84  HKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHV----CKFGPKT 139

Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEIN---------- 259
               +++LI+MY KCG ++ A QV+              ++GH   G++           
Sbjct: 140 HAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMP 199

Query: 260 -KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
            + +V WT+M+  Y R G + + + ++  M + G +PDE++ ++V+ AC+  G +++G  
Sbjct: 200 CRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVG-- 257

Query: 319 YFEWMVHDYKLEPG----PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
             +W +H Y  + G       ++ LV++  + G +D+AW L N+M+++      V  W  
Sbjct: 258 --KW-IHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEK-----DVISWST 309

Query: 375 LLSACHDCGK 384
           ++    + GK
Sbjct: 310 MIGGLANHGK 319


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 132/421 (31%), Positives = 218/421 (51%), Gaps = 35/421 (8%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +N +I+   +NG     L  F  M    I  D +   S L A T      +G
Sbjct: 443 MRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYG 501

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA---------- 155
            ++ + + KSG  S+  VG +LID+Y+K  +I +AE +      + +V            
Sbjct: 502 MEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHN 561

Query: 156 ----------NALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEF 205
                     N+++SGY   +       L   M  +G+  D FT + +L  CA L++A  
Sbjct: 562 KRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGL 621

Query: 206 GRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
           G+Q+HA +I+K   L +DV++ S+L++MY KCG +  +  +F       E  + +D V W
Sbjct: 622 GKQIHAQVIKK--ELQSDVYICSTLVDMYSKCGDLHDSRLMF-------EKSLRRDFVTW 672

Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
            +M+  Y  +G  +E I+L+E M++   KP+ V F++++ AC+H G +  G+EYF  M  
Sbjct: 673 NAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKR 732

Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH-DCGK 384
           DY L+P   HYS +VD+L ++G++ +A +LI EM       +   +W  LL  C      
Sbjct: 733 DYGLDPQLPHYSNMVDILGKSGKVKRALELIREM----PFEADDVIWRTLLGVCTIHRNN 788

Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
            E+ + A    L LDP +   Y +LSN+YA   MW+++  LR  M+   LKK+ GCSW+E
Sbjct: 789 VEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVE 848

Query: 445 V 445
           +
Sbjct: 849 L 849



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 158/336 (47%), Gaps = 15/336 (4%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
           R+ + +N ++S + +NG  L +++ F  M   GI  D       L   + ++D   G Q+
Sbjct: 143 RDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQI 202

Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
              V + G  + V   SAL+D+YAK     ++  +F  IP KNSV  +A+++G  +  L 
Sbjct: 203 HGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLL 262

Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
           +  L+  + M  +         +++LR+CA LS    G Q+HA+ ++   +   D  +++
Sbjct: 263 SLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKS--DFAADGIVRT 320

Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
           + ++MY KC  +  A  +F       +   N +   + +M+  Y +  +  + + L+  +
Sbjct: 321 ATLDMYAKCDNMQDAQILF-------DNSENLNRQSYNAMITGYSQEEHGFKALLLFHRL 373

Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
           + +G   DE++   V  AC+    +  G++ +   +    L       +  +D+  +   
Sbjct: 374 MSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKS-SLSLDVCVANAAIDMYGKCQA 432

Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
           L +A+++ +EM  R   S     W A+++A    GK
Sbjct: 433 LAEAFRVFDEMRRRDAVS-----WNAIIAAHEQNGK 463



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 133/296 (44%), Gaps = 13/296 (4%)

Query: 21  SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
           +R +    + R   +    T+ L  +N  +   F+ V  +  + G+     +  + M + 
Sbjct: 18  NRCLTEKISYRRVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIIS 77

Query: 81  GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
           G    T+ L   L   T+ +D      V   +     L  V   + +I+ Y+K   +  A
Sbjct: 78  GFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMP----LRDVVSWNKMINGYSKSNDMFKA 133

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
              F+ +PV++ V  N++LSGY +       +E+   M   G+++D  T + +L+ C+ L
Sbjct: 134 NSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFL 193

Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
                G Q+H  ++R  C+   DV   S+L++MY K     ++L+VF       +G   K
Sbjct: 194 EDTSLGMQIHGIVVRVGCD--TDVVAASALLDMYAKGKRFVESLRVF-------QGIPEK 244

Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
           + V W++++    +N      +K ++ M        +  + +V+ +C+   +++LG
Sbjct: 245 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLG 300


>gi|242046440|ref|XP_002461091.1| hypothetical protein SORBIDRAFT_02g040530 [Sorghum bicolor]
 gi|241924468|gb|EER97612.1| hypothetical protein SORBIDRAFT_02g040530 [Sorghum bicolor]
          Length = 695

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 224/402 (55%), Gaps = 21/402 (5%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           ++ ++ + ++ +I+   +N     ++  FS M   G+  ++  L S L + + ++  R+G
Sbjct: 311 IDHKDVISWSTIIAGHSQNRRYHVSVSLFSEMVASGVKPNSTTLASILPSLSELRLFRYG 370

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K++     ++G   S F+ SALID Y++   I +AE++F+  P  + V +N+++ GY   
Sbjct: 371 KEIHCFSLRNGLEHSEFLASALIDFYSRQGSIKEAEIVFEFTPKNDLVVSNSMIGGYVVN 430

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR----KCCNLG 221
           +     L L+R +   GL  D  T+ ++L  C   S    G+++HAY IR     CC++ 
Sbjct: 431 EDSESALRLLRALLKEGLRPDRVTVVSVLPLCNQHSRLLQGKELHAYAIRHNISSCCSVS 490

Query: 222 NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEV 281
           N      +L +MY KCG +  A ++F L   R       + V + +++   G++G+ ++ 
Sbjct: 491 N------ALTDMYCKCGCLELAFEIFLLMTER-------NTVTYNTLISSLGKHGHAEQA 537

Query: 282 IKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
             L++ M  +G  PD+V FV ++S CSH G +  G+ +++ M+ DY + P  EHYSC+VD
Sbjct: 538 FFLFDLMKRDGVSPDKVTFVALLSCCSHEGLIDKGLCFYDSMLRDYNISPDKEHYSCIVD 597

Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
           L  R+G LD AW  I  + +       + + G LLSAC +  + ++ +L A++  E +P+
Sbjct: 598 LYSRSGRLDAAWSFIANLQE----VPEIDVLGCLLSACREHNRMDIAELVAERIFEQNPN 653

Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
           + G +++LSN+YA   MW E+ ++R +++E+ LKK  G S I
Sbjct: 654 DPGYHILLSNIYASAGMWSEVTRIRTMIEERSLKKRTGNSLI 695



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 161/365 (44%), Gaps = 25/365 (6%)

Query: 18  IFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
           +  ++L+  Y   R    LG        +  RN   +N VI      G    AL+ +  M
Sbjct: 77  VLAAQLVRAYARLR-DGGLGHAVRVFDGMLTRNSFAWNAVIKGLVDAGRFSEALQWYWDM 135

Query: 78  HVHG-IFLDTYALCSSLTASTSVKDARFGKQVQ----AHVTKSGWLSSVFVGSALIDLYA 132
              G +  D +     L A  ++     G++VQ    A + +     +VFV  AL+D++A
Sbjct: 136 VGDGSVVADRFTYPPVLKACAALGVVEQGRKVQENVEADIARGIAKCNVFVQCALVDMFA 195

Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
           K   + +A  +F+ + V++     A++ G      W   + L++ M + G   D   L+ 
Sbjct: 196 KCGCLGEARNVFESMEVRDLAAWTAMIGGTVHGGDWLEVMTLLKRMKSEGFRPDSMILAT 255

Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
           ++ AC  +     G  +H  +++  C +G D  + ++L++MY KC  +  A  +F    H
Sbjct: 256 VIPACGKVKELRTGTALHGCVVK--CGVGVDTCVLNALVDMYCKCARLDFAASLFWSIDH 313

Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
                  KDV+ W++++  + +N  +   + L+  M+ +G KP+     +++ + S    
Sbjct: 314 -------KDVISWSTIIAGHSQNRRYHVSVSLFSEMVASGVKPNSTTLASILPSLSELRL 366

Query: 313 VKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSS 368
            + G E     +H + L  G EH     S L+D   R G + +A +++ E   +     S
Sbjct: 367 FRYGKE-----IHCFSLRNGLEHSEFLASALIDFYSRQGSIKEA-EIVFEFTPKNDLVVS 420

Query: 369 VSMWG 373
            SM G
Sbjct: 421 NSMIG 425



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 158/348 (45%), Gaps = 13/348 (3%)

Query: 15  CLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF 74
           C +  Q  L+  +  C     LG   N  + +  R+   +  +I      G  L  +   
Sbjct: 182 CNVFVQCALVDMFAKC---GCLGEARNVFESMEVRDLAAWTAMIGGTVHGGDWLEVMTLL 238

Query: 75  SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
             M   G   D+  L + + A   VK+ R G  +   V K G      V +AL+D+Y K 
Sbjct: 239 KRMKSEGFRPDSMILATVIPACGKVKELRTGTALHGCVVKCGVGVDTCVLNALVDMYCKC 298

Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
             +  A  +F  I  K+ +  + +++G+ + + +   + L   M A G+  +  TL+++L
Sbjct: 299 ARLDFAASLFWSIDHKDVISWSTIIAGHSQNRRYHVSVSLFSEMVASGVKPNSTTLASIL 358

Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
            + + L    +G+++H + +R    L +  F+ S+LI+ Y + G + +A  VF       
Sbjct: 359 PSLSELRLFRYGKEIHCFSLRN--GLEHSEFLASALIDFYSRQGSIKEAEIVF------- 409

Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
           E     D+V+  SM+G Y  N   +  ++L  A+L  G +PD V  V+V+  C+   ++ 
Sbjct: 410 EFTPKNDLVVSNSMIGGYVVNEDSESALRLLRALLKEGLRPDRVTVVSVLPLCNQHSRLL 469

Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
            G E   + +  + +       + L D+ C+ G L+ A+++   M +R
Sbjct: 470 QGKELHAYAIR-HNISSCCSVSNALTDMYCKCGCLELAFEIFLLMTER 516


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 132/396 (33%), Positives = 212/396 (53%), Gaps = 17/396 (4%)

Query: 54  FNVVISDFCRNGSPLY---ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110
           FN +I  + R G+      AL  F  M    I        S L AS S+      KQ+  
Sbjct: 419 FNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHG 478

Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
            + K G    +F GSALI +Y+    + D+ L+FDE+ VK+ V  N++ SGY +      
Sbjct: 479 LMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEE 538

Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
            L L   +       D FT   ++ A   L++ + G++ H  ++++   L  + ++ ++L
Sbjct: 539 ALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKR--GLECNPYITNAL 596

Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
           ++MY KCG    A + F+ A  R       DVV W S++  Y  +G  ++ +++ E M+ 
Sbjct: 597 LDMYAKCGSPEDAHKAFDSAASR-------DVVCWNSVISSYANHGEGRKALQMLEKMMC 649

Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
            G +P+ + FV V+SACSH G V+ G++ FE M+  + +EP  EHY C+V LL RAG L+
Sbjct: 650 EGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLN 708

Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
           +A +LI +M  +     +  +W +LLS C   G  EL + AA+ A+  DP + G + +LS
Sbjct: 709 EARELIEKMPTK----PAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLS 764

Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
           N+YA   MW +  ++RE MK +G+ K+ G SWIE+ 
Sbjct: 765 NIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIEIN 800



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 137/266 (51%), Gaps = 12/266 (4%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           L  ++ + +  +IS   + G    +L+ F  +    +  D Y L + L+A + +     G
Sbjct: 209 LPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGG 268

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           KQ+ AH+ + G      + + LID Y K   +  A  +FD +P KN +    LLSGY + 
Sbjct: 269 KQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQN 328

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
            L    +EL   MP  GL  D F  S++L +CA L A EFG QVHAY I+   NLGND +
Sbjct: 329 SLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIK--ANLGNDSY 386

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY---FKEVI 282
           + +SLI+MY KC  +T+A +VF++           DVVL+ +M+  Y R G      + +
Sbjct: 387 VTNSLIDMYAKCDCLTEARKVFDIFA-------ADDVVLFNAMIEGYSRLGTQWELHDAL 439

Query: 283 KLYEAMLMNGTKPDEVAFVTVISACS 308
            ++  M     +P  + FV+++ A +
Sbjct: 440 NIFHDMRFRLIRPSLLTFVSLLRASA 465



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 166/343 (48%), Gaps = 56/343 (16%)

Query: 55  NVVISDFCRNGSPLYALKTFSFM---------------HVHG-------IFLD------- 85
           N++++ + R G  +YA K F  M               + HG       +FLD       
Sbjct: 83  NILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKN 142

Query: 86  ---TYALCSSLTASTSVKDARFGK----QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
               Y L S + A + +  +  G+    Q+Q+ + KS +   V+VG+ LID Y K   I 
Sbjct: 143 SPNEYILSSFIQACSGLDGS--GRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNID 200

Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACA 198
            A L+FD +P K++V    ++SG  +       L+L   +    +  D + LS +L AC+
Sbjct: 201 YARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACS 260

Query: 199 GLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
            L   E G+Q+HA+++R       D  + + LI+ Y KCG V  A ++F       +G  
Sbjct: 261 ILPFLEGGKQIHAHILRYGHE--KDASLMNVLIDSYVKCGRVRAAHKLF-------DGMP 311

Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
           NK+++ WT++L  Y +N   KE ++L+ +M   G KPD  A  +++++C+    ++ G +
Sbjct: 312 NKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQ 371

Query: 319 YFEWMVHDYKLEP--GPEHY--SCLVDLLCRAGELDKAWKLIN 357
                VH Y ++   G + Y  + L+D+  +   L +A K+ +
Sbjct: 372 -----VHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFD 409



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/178 (19%), Positives = 77/178 (43%), Gaps = 16/178 (8%)

Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
           VH  +I     L  D ++ + L+ +Y + G +  A +VF       E    +++V W++M
Sbjct: 66  VHGQIIVSGLEL--DTYLSNILMNLYSRAGGMVYARKVF-------EKMPERNLVTWSTM 116

Query: 269 LGVYGRNGYFKEVIKLY-EAMLMNGTKPDEVAFVTVISACSH-TGQVKLGIEYFEWMVHD 326
           +     +G+++E + ++ +        P+E    + I ACS   G  +  +   +  +  
Sbjct: 117 VSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVK 176

Query: 327 YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
            + +      + L+D   + G +D A  + + + ++     S   W  ++S C   G+
Sbjct: 177 SRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEK-----STVTWTTMISGCVKMGR 229


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 220/431 (51%), Gaps = 43/431 (9%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +N  NP  +  +I  +   G    +   ++ M   G+   ++   +   A  +  +   G
Sbjct: 102 VNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG 161

Query: 106 KQVQAH-VTKSGWLSSVFVGSALIDLY-------------------------------AK 133
           KQV A  +   G+ S ++VG+++IDLY                               AK
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAK 221

Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
              +  A  +FD++P K+ V   A+++GY +       LE  + M  +G++ D  TL+ +
Sbjct: 222 YGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281

Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
           + ACA L A +    +     R       +V + S+LI+MY KCG   +A +VF +   R
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
                  +V  ++SM+  Y  +G     ++L+  ML    +P++V F+ ++SACSH G V
Sbjct: 342 -------NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLV 394

Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
           + G + F  M   + + P P+HY+C+VDLL RAG L++A  L+  M    +G     +WG
Sbjct: 395 EQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGG----VWG 450

Query: 374 ALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
           ALL AC   G  ++ ++AA +  +L+P+ +G Y++LSN+YA    W+E+ +LR++++EKG
Sbjct: 451 ALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKG 510

Query: 434 LKKDVGCSWIE 444
            KK+ GCSW E
Sbjct: 511 FKKNPGCSWFE 521



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 131/289 (45%), Gaps = 38/289 (13%)

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE--LMFDEIPVKNSVCANALLSGYC 163
           KQV AH+ ++G     +V + LI +  K+ +   +   L+F ++   N     A++ GY 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
              L +        M   G+    FT SAL +AC      + G+QVHA  I       +D
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTIL-IGGFASD 177

Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHR------------------------LEGEIN 259
           +++ +S+I++Y KCG +  A +VF+    R                         +   +
Sbjct: 178 LYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPS 237

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
           KD+V WT+M+  Y +NG  KE ++ ++ M   G + DEV    VISAC+  G VK    +
Sbjct: 238 KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVK----H 293

Query: 320 FEWMVHDYKLEP--GPEHY----SCLVDLLCRAGELDKAWKLINEMLDR 362
             W + D       GP       S L+D+  + G  D+A+K+   M +R
Sbjct: 294 ANW-IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341


>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
 gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
          Length = 703

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 215/400 (53%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + ++ +I  + ++G     L+ +  M    +  ++  L S L A   V DA  G
Sbjct: 261 MTDRDVITWSCMIKGYVQHGDAHEGLRMYREMVKARVQPNSVTLVSVLQACALVVDAEEG 320

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
           K+V       G    V V +AL+D+Y K     +A  +F  +P K+ V   A++ G  + 
Sbjct: 321 KRVHRVAVSIGCELEVGVATALVDMYMKCSCHEEAMCLFHRMPKKDVVAWAAVIGGLTQN 380

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           +L    L + + M       D  T+  +L AC+          +H Y++R   N  N+ F
Sbjct: 381 ELPGESLHVFKCMLLDDHVPDAITMVKVLAACSEFGGTRLAICLHGYLVRNGFN--NNAF 438

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + ++L+++Y KCG +  A++VF       EG   KD+V+W SM+  YG +G  +E + LY
Sbjct: 439 VAAALLDLYSKCGDIDSAVRVF-------EGTTEKDIVVWGSMIAGYGAHGLGQEAVALY 491

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           + M+ +  +P+ V FV+V+SACSH+G V+ GI+ F+ M   + + P  EH S +VDLL R
Sbjct: 492 QRMIASSIQPNSVTFVSVLSACSHSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGR 551

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           AGEL +A + I  M     G +    W ALL+AC +    ++ K+AA+  L+LDP +VG 
Sbjct: 552 AGELQEAIRFIRGM----DGRAVAHTWCALLAACREHNNTKMSKVAAKSLLKLDPDHVGY 607

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y +L+N+YA    W+ +   R++++ + L+K  G S +EV
Sbjct: 608 YNLLTNIYAYDEKWESVKDTRDMVRGRDLRKVPGYSSVEV 647



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 176/361 (48%), Gaps = 26/361 (7%)

Query: 57  VISDFCRNGSPLYALKTFSFMHV-HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKS 115
           V++ + +NG    AL+ F+   V  G+ L    L S+++A+  +   R G+   A+V ++
Sbjct: 170 VVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGHVRKGQACHAYVVRN 229

Query: 116 GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELV 175
                + + + ++  Y K+     +  +F+ +  ++ +  + ++ GY +      GL + 
Sbjct: 230 SLGYDLALVNTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHEGLRMY 289

Query: 176 RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
           R M    +  +  TL ++L+ACA +  AE G++VH   +   C L  +V + ++L++MY 
Sbjct: 290 REMVKARVQPNSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCEL--EVGVATALVDMYM 347

Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
           KC    +A+ +F    HR+     KDVV W +++G   +N    E + +++ ML++   P
Sbjct: 348 KCSCHEEAMCLF----HRMP---KKDVVAWAAVIGGLTQNELPGESLHVFKCMLLDDHVP 400

Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDK 351
           D +  V V++ACS  G  +L I      +H Y +  G  +     + L+DL  + G++D 
Sbjct: 401 DAITMVKVLAACSEFGGTRLAI-----CLHGYLVRNGFNNNAFVAAALLDLYSKCGDIDS 455

Query: 352 AWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVML 409
           A ++       G     + +WG++++    H  G+  +       A  + P++V    +L
Sbjct: 456 AVRVFE-----GTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNSVTFVSVL 510

Query: 410 S 410
           S
Sbjct: 511 S 511



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 167/386 (43%), Gaps = 52/386 (13%)

Query: 94  TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
            A+ ++        + A++ +SG L S    +A +  +    L  D   +FDE P     
Sbjct: 10  AAAATISTPLAAAHLHANLLRSGLLHSSHHLTAHVLAWYPPGLARD---LFDEFPSPTPR 66

Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
            ANALL  +  A+ W      + L P L +  D FT S LLRACA L +   GR VHA  
Sbjct: 67  LANALLRAHIRARQWRAA---ILLGPRLRVRLDGFTFSLLLRACAALPSLAHGRAVHAVA 123

Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
           IR  C    D F+ +++++MY +CG +  A+  + +    LE     D+VL TS++  Y 
Sbjct: 124 IRS-CTASEDAFVATAIVQMYARCGDMVGAINAYGV----LE---KPDIVLRTSVVTGYE 175

Query: 274 RNGYFKEVIKLY-EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD---YKL 329
           +NG  +E ++ +   ++  G     V  V+ +SA +  G V+ G     ++V +   Y L
Sbjct: 176 QNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGHVRKGQACHAYVVRNSLGYDL 235

Query: 330 ---------------------------EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
                                      +     +SC++    + G+  +  ++  EM+  
Sbjct: 236 ALVNTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHEGLRMYREMVKA 295

Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH-NVGIYVMLSNLYAKFCMWDE 421
               +SV++  ++L AC      E GK   + A+ +     VG+   L ++Y K    +E
Sbjct: 296 RVQPNSVTLV-SVLQACALVVDAEEGKRVHRVAVSIGCELEVGVATALVDMYMKCSCHEE 354

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
              L   M     KKDV  +W  V G
Sbjct: 355 AMCLFHRMP----KKDV-VAWAAVIG 375



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 11/229 (4%)

Query: 82  IFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDA 140
           + LD +     L A  ++     G+ V A   +S   S   FV +A++ +YA+   +  A
Sbjct: 93  VRLDGFTFSLLLRACAALPSLAHGRAVHAVAIRSCTASEDAFVATAIVQMYARCGDMVGA 152

Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMPALGLDYDHFTLSALLRACAG 199
              +  +   + V   ++++GY +  +    LE   R +   G+     TL + + A A 
Sbjct: 153 INAYGVLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQ 212

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L     G+  HAY++R   +LG D+ + ++++  Y K G    ++++F       EG  +
Sbjct: 213 LGHVRKGQACHAYVVRN--SLGYDLALVNTVLSFYVKIGDFQASMRLF-------EGMTD 263

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
           +DV+ W+ M+  Y ++G   E +++Y  M+    +P+ V  V+V+ AC+
Sbjct: 264 RDVITWSCMIKGYVQHGDAHEGLRMYREMVKARVQPNSVTLVSVLQACA 312


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 127/400 (31%), Positives = 207/400 (51%), Gaps = 13/400 (3%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
           +  R+ + +N +I+   +N      +   + M  +G+  D +   S L A   ++   +G
Sbjct: 399 MEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYG 458

Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
             V     KSG     FV S ++D+Y K  +I +A+ + D I  +  V  N+++SG+   
Sbjct: 459 SVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLN 518

Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
           K      +    M  +G+  DHFT + +L  CA L+  E G+Q+H  +I++   +  D +
Sbjct: 519 KQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQ--EMLGDEY 576

Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
           + S+L++MY KCG +  +L +F  A  +L      D V W +M+  Y  +G   E ++++
Sbjct: 577 ISSTLVDMYAKCGNMPDSLLMFEKA-QKL------DFVSWNAMICGYALHGQGFEALEMF 629

Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
           E M      P+   FV V+ ACSH G +  G  YF  M   YKLEP  EH++C+VD+L R
Sbjct: 630 ERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGR 689

Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
           +    +A K I  M       +   +W  LLS C      E+ + AA   L LDP +  +
Sbjct: 690 SKGPQEALKFIRSM----PLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSV 745

Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           Y++LSN+YA+   W ++ + R LM++  LKK+ GCSWIEV
Sbjct: 746 YILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEV 785



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 158/309 (51%), Gaps = 19/309 (6%)

Query: 55  NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
           N ++    R G    AL+ F FM   GI  D  +L    +A   VK    G QV     K
Sbjct: 307 NAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIK 366

Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
           SG+   V V +A++DLY K   + +A L+F E+  ++SV  NA+++   + + +   +  
Sbjct: 367 SGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAY 426

Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
           +  M   G++ D FT  ++L+ACAGL + E+G  VH   I+    LG D F+ S++++MY
Sbjct: 427 LNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKS--GLGLDAFVSSTVVDMY 484

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            KCG++T+A ++ +  G        +++V W S++  +  N   +E  K +  ML  G K
Sbjct: 485 CKCGMITEAQKLHDRIG-------GQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVK 537

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY-SCLVDLLCRAGEL---- 349
           PD   + TV+  C++   ++LG +    ++    L  G E+  S LVD+  + G +    
Sbjct: 538 PDHFTYATVLDTCANLATIELGKQIHGQIIKQEML--GDEYISSTLVDMYAKCGNMPDSL 595

Query: 350 ---DKAWKL 355
              +KA KL
Sbjct: 596 LMFEKAQKL 604



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 159/356 (44%), Gaps = 25/356 (7%)

Query: 28  TTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTY 87
           T   H  + G   +    +   + + +N ++S +C+ G    ++     M   G+  D  
Sbjct: 78  TAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRT 137

Query: 88  ALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI 147
            L   L A   ++D   G Q+ A   K+G    V  GSAL+D+Y K   + DA   F  +
Sbjct: 138 TLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGM 197

Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
             +NSV   A ++G  + + +  GLEL   M  LGL       +++ R+CA ++     R
Sbjct: 198 GERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTAR 257

Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKC-GLVTKALQVFNLAGHRLEGEINKDVVLWT 266
           Q+HA+ I+       D  + ++++++Y K   LV      F+L  H ++           
Sbjct: 258 QLHAHAIKN--KFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQA--------CN 307

Query: 267 SMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHD 326
           +M+    R G   E ++L++ M  +G   D V+   V SAC+       G++     VH 
Sbjct: 308 AMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQ-----VHC 362

Query: 327 YKLEPGPEHYSC----LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
             ++ G +   C    ++DL  +   L +A+ +  EM  R     SVS W A+++A
Sbjct: 363 LAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQR----DSVS-WNAIIAA 413



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 44/257 (17%)

Query: 83  FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
           F   Y LC+    S        G+   A +  SG++ + FV + L+ +YA+      A  
Sbjct: 5   FSHLYQLCAGAGRSALAT----GQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARG 60

Query: 143 MFDEIPVKNS-------------------------------VCANALLSGYCEAKLWAGG 171
           +FD +P +++                               V  NALLSGYC+  ++   
Sbjct: 61  VFDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDS 120

Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
           + L   M   G+  D  TL+ LL+AC GL     G Q+HA  ++    L  DV   S+L+
Sbjct: 121 VGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKT--GLEMDVRAGSALV 178

Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
           +MYGKC  +  AL+ F+  G R       + V W + +    +N  +   ++L+  M   
Sbjct: 179 DMYGKCRSLEDALRFFHGMGER-------NSVSWGAAIAGCVQNEQYTRGLELFVQMQRL 231

Query: 292 GTKPDEVAFVTVISACS 308
           G    + A+ +V  +C+
Sbjct: 232 GLGVSQPAYASVFRSCA 248


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 238/443 (53%), Gaps = 31/443 (6%)

Query: 17  IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKT 73
           I   S L++ Y+TC      G L +  K  +    R+ + +  +I  +  NG+ L A+  
Sbjct: 111 IFVSSALIVMYSTC------GKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSL 164

Query: 74  FSFMHVH------GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSAL 127
           F  + V        +FLD+  L S ++A + V      + + + V K G+   V VG+ L
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTL 224

Query: 128 IDLYAKLLL--IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-LMPALGLD 184
           +D YAK     +  A  +FD+I  K+ V  N+++S Y ++ +     E+ R L+    + 
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVT 284

Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
           ++  TLS +L A +   A   G+ +H  +IR    L +DV + +S+I+MY KCG V  A 
Sbjct: 285 FNAITLSTVLLAVSHSGALRIGKCIHDQVIR--MGLEDDVIVGTSIIDMYCKCGRVETAR 342

Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
           + F+    R++   NK+V  WT+M+  YG +G+  + ++L+ AM+ +G +P+ + FV+V+
Sbjct: 343 KAFD----RMK---NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
           +ACSH G    G  +F  M   + +EPG EHY C+VDLL RAG L KA+ LI  M     
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM----K 451

Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQ 424
                 +W +LL+AC      EL +++  +  ELD  N G Y++LS++YA    W ++ +
Sbjct: 452 MKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVER 511

Query: 425 LRELMKEKGLKKDVGCSWIEVTG 447
           +R +MK +GL K  G S +E+ G
Sbjct: 512 VRMIMKNRGLVKPPGFSLLELNG 534



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 188/390 (48%), Gaps = 49/390 (12%)

Query: 29  TCRH--KKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
           T RH  ++NL TL N  ++++  +   +N VI+D  R+G    AL  FS M    ++   
Sbjct: 19  TERHTERQNLTTLFN--RYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTR 76

Query: 87  YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
            +   ++ A +S+ D   GKQ        G+ S +FV SALI +Y+    + DA  +FDE
Sbjct: 77  SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136

Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD---------YDHFTLSALLRAC 197
           IP ++ V   +++ GY    L    L+ V L   L +D          D   L +++ AC
Sbjct: 137 IPKRDIVSWTSMIRGY---DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC 193

Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL--VTKALQVFNLAGHRLE 255
           + + A      +H+++I++  + G  V + ++L++ Y K G   V  A ++F+       
Sbjct: 194 SRVPAKGLTESIHSFVIKRGFDRG--VSVGNTLLDAYAKGGEGGVAVARKIFDQI----- 246

Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVK 314
             ++KD V + S++ VY ++G   E  +++  ++ N     + +   TV+ A SH+G ++
Sbjct: 247 --VDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALR 304

Query: 315 LGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
           +G       +HD  +  G E      + ++D+ C+ G ++ A K  + M ++     +V 
Sbjct: 305 IG-----KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNK-----NVR 354

Query: 371 MWGALLSACHDCGKFELGKLAAQKALELDP 400
            W A+++     G        A KALEL P
Sbjct: 355 SWTAMIAGYGMHGH-------AAKALELFP 377


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 140/425 (32%), Positives = 226/425 (53%), Gaps = 34/425 (8%)

Query: 31  RHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHG-------IF 83
           R   ++G+        + +N + +N +I  +C NG+   A + F  M + G         
Sbjct: 92  RRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSM 151

Query: 84  LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
           +  YA   +L     +K A+           + W       + LI  YA    + + + +
Sbjct: 152 ISGYA--DNLLKCEDLKAAQLAFDGVTERDTATW-------NVLISGYACCNQLENIQNL 202

Query: 144 FDEIP----VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
             ++       N    N ++SG+ E       L L   M    L  D +T+  +L ACA 
Sbjct: 203 IQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACAR 262

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
           L+    G+QVHA+ IR+   L  DV + ++L++MY KCG +  A+QV+N    R+    N
Sbjct: 263 LATIARGKQVHAHSIRQGYEL--DVHIGAALVDMYAKCGSIKHAMQVYN----RIS---N 313

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
            ++V   +ML  Y  +G+  E I L+  ML NG +PD V F++V+S+C H G V+ G E+
Sbjct: 314 PNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEF 373

Query: 320 FEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
           F+ M + Y + P  +HY+C+VDLL RAG LD+A++L+ ++  +     SV MWGALL  C
Sbjct: 374 FDLMTY-YNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRK---PDSV-MWGALLGGC 428

Query: 380 HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVG 439
              G  ELG++AA+  +EL+P+N G YV+L+NLYA    W ++ + R+++K++G+ K  G
Sbjct: 429 VIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPG 488

Query: 440 CSWIE 444
           CSWIE
Sbjct: 489 CSWIE 493



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 145/352 (41%), Gaps = 43/352 (12%)

Query: 50  NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
           N + ++ VI  F +NG    AL+    M   G   +   L S L A   +++   GK++ 
Sbjct: 10  NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69

Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
            +VT+ G++S+ FV + L+D+Y +   +  A  +F    VKN V  N ++ GYCE     
Sbjct: 70  GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 129

Query: 170 GGLELVRLMPALGLDYDHFT-----LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
              EL   M  +G D   +       +  L  C  L AA+          R       D 
Sbjct: 130 KAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLA--FDGVTER-------DT 180

Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE-INKDVVLWTSMLGVYGRNGYFKEVIK 283
              + LI  Y  C  +     +      +++G+    +V  W  ++  +  NG+ +  ++
Sbjct: 181 ATWNVLISGYACCNQLENIQNLI----QKMKGDGFEPNVYTWNGIISGHVENGHNELALR 236

Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE---HY-SCL 339
           L+  M  +  +PD      ++ AC+    +  G +     VH + +  G E   H  + L
Sbjct: 237 LFTEMQTSSLRPDIYTVGIILPACARLATIARGKQ-----VHAHSIRQGYELDVHIGAAL 291

Query: 340 VDLLCRAGELDKAWKLINEMLD---------------RGHGSSSVSMWGALL 376
           VD+  + G +  A ++ N + +                GHG   ++++  +L
Sbjct: 292 VDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNML 343


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 125/408 (30%), Positives = 213/408 (52%), Gaps = 20/408 (4%)

Query: 38  TLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTAST 97
           ++    + +  ++ + +N +I+   RNG     L+    M    +  D++ L S L    
Sbjct: 191 SVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA 250

Query: 98  SVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANA 157
              D   GK++     + G  + ++V S+LID+YAK   + D+  +F  +  ++ +  N+
Sbjct: 251 ENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNS 310

Query: 158 LLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKC 217
           +++G  +  L+  GL   R M    +    ++ S+++ ACA L+    G+Q+H Y+ R  
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN- 369

Query: 218 CNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY 277
                ++F+ SSL++MY KCG +  A Q+F+    RL     +D+V WT+M+     +G 
Sbjct: 370 -GFDENIFIASSLVDMYAKCGNIRTAKQIFDRM--RL-----RDMVSWTAMIMGCALHGQ 421

Query: 278 FKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS 337
             + I+L+E M   G K        V++ACSH G V    +YF  M  D+ + PG EHY+
Sbjct: 422 APDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYA 474

Query: 338 CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE 397
            + DLL RAG L++A+  I  M    H   + S+W  LLSAC      ++ +  A + LE
Sbjct: 475 AVSDLLGRAGRLEEAYDFICGM----HIGPTGSIWATLLSACRVHKNIDMAEKVANRILE 530

Query: 398 LDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
           +DP+N G Y++L+N+Y+    W E  + R  M+  G++K   CSWIEV
Sbjct: 531 VDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEV 578



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 162/364 (44%), Gaps = 55/364 (15%)

Query: 52  LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
           L +  VI  +  +G P  +L +F  M   G++ D     S L +   + D   G+ +  +
Sbjct: 72  LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGY 131

Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHD-------AELMFDE------------------ 146
           + + G    ++ G+AL+++Y+KL  + +       A  +FDE                  
Sbjct: 132 IIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDS 191

Query: 147 -------IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
                  +P K+ V  N +++G     L+   L ++R M    L  D FTLS++L   A 
Sbjct: 192 VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE 251

Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
                 G+++H   IR+   L  D+++ SSLI+MY KC  V  + +VF L   R      
Sbjct: 252 NVDISRGKEIHGCSIRQ--GLDADIYVASSLIDMYAKCTRVADSCRVFTLLTER------ 303

Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
            D + W S++    +NG F E ++ +  MLM   KP   +F +++ AC+H   + LG + 
Sbjct: 304 -DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQ- 361

Query: 320 FEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
               +H Y    G +      S LVD+  + G +  A ++ + M  R   S     W A+
Sbjct: 362 ----LHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-----WTAM 412

Query: 376 LSAC 379
           +  C
Sbjct: 413 IMGC 416


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 140/405 (34%), Positives = 214/405 (52%), Gaps = 21/405 (5%)

Query: 49  RNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-----GIFLDTYALCSSLTASTSVKDAR 103
           RN + +N +IS +   G    +L  F  M            D +   S L A  S+  AR
Sbjct: 170 RNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAR 229

Query: 104 FGKQVQAHVTKSG--WLSSVFVGSALIDLYAKLL-LIHDAELMFDEIPVKNSVCANALLS 160
            G QV A +   G    S+  +  AL+D+Y K   L+  A  +F+ +  KN++    ++ 
Sbjct: 230 EGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIV 289

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
           G+ +       +EL     + G+  D   LS+++   A  +  E GRQVH Y ++    L
Sbjct: 290 GHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGL 349

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             DV + +SLI+MY KCGL  +A + F     R       +VV WT+M+   G++G+ +E
Sbjct: 350 --DVSVANSLIDMYHKCGLTDEAARRFREVPAR-------NVVSWTAMINGLGKHGHGQE 400

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
            I ++E M   G +PDEVA++ ++SACSH+G V+    YF  + HD +L P  EHY+C+V
Sbjct: 401 AIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMV 460

Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
           DLL RAGEL +A  L+  M      + +V +W  LLSAC       +G+ A +  L +D 
Sbjct: 461 DLLGRAGELSEAKDLVATMPM----APTVGVWQTLLSACRVHKNVTVGREAGETLLAIDG 516

Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
            N   YVMLSN++A+   W E  ++R  M+ +GL+K  GCSW+EV
Sbjct: 517 DNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWVEV 561



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 175/378 (46%), Gaps = 30/378 (7%)

Query: 46  LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH-VHGIFLDTYALCSSLTASTSVKDARF 104
           +  RN + +  ++  F R+G     L+    M  +  +  + + L +SL A   V D   
Sbjct: 65  MPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAA 124

Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
           G  +     ++G+     V ++L+ LY+K   I DA  +FD    +N V  NA++SGY  
Sbjct: 125 GVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAH 184

Query: 165 AKLWAGGLELVRLMPALGLDY-----DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
           A      L + R M     +      D FT ++LL+AC  L AA  G QVHA M+ +  +
Sbjct: 185 AGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVS 244

Query: 220 LGNDVFMQSSLIEMYGKCG-LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
             ++  +  +L++MY KC  L+  A+QVFN    RLE    K+ + WT+++  + + G  
Sbjct: 245 TASNAILAGALLDMYVKCRCLLPMAMQVFN----RLE---QKNAIQWTTVIVGHAQEGQV 297

Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE-PGPEHYS 337
           KE ++L+     +G + D     +V+   +    V+ G +     VH Y ++ P     S
Sbjct: 298 KEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQ-----VHCYTVKTPAGLDVS 352

Query: 338 ---CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAA 392
               L+D+  + G  D+A +   E+  R     +V  W A+++    H  G+  +     
Sbjct: 353 VANSLIDMYHKCGLTDEAARRFREVPAR-----NVVSWTAMINGLGKHGHGQEAIHMFEE 407

Query: 393 QKALELDPHNVGIYVMLS 410
            +A  ++P  V    +LS
Sbjct: 408 MRAEGVEPDEVAYLALLS 425



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 15/238 (6%)

Query: 93  LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
           L AS +      G Q+   + K G+ S   +G+ LID+YAK   +  A  +F  +P +N 
Sbjct: 11  LRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERNV 70

Query: 153 VCANALLSGYCEAKLWAGGLELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHA 211
           V   AL+ G+         L L+  M +L  +  + FTLSA L+AC  +     G  +H 
Sbjct: 71  VSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHG 130

Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
             +R          + +SL+ +Y K G +  A +VF+       G + +++V W +M+  
Sbjct: 131 ACVR--AGFEGHHVVANSLVLLYSKGGRIGDARRVFD-------GTVFRNLVTWNAMISG 181

Query: 272 YGRNGYFKEVIKLYEAMLMNGT-----KPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
           Y   G+ ++ + ++  M          +PDE  F +++ AC   G  + G +    MV
Sbjct: 182 YAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMV 239



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 130/363 (35%), Gaps = 46/363 (12%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
            VHA     G+      I    L+  Y  CR    L         L  +N + +  VI  
Sbjct: 233 QVHAAMVIRGVSTASNAILAGALLDMYVKCRCL--LPMAMQVFNRLEQKNAIQWTTVIVG 290

Query: 61  FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
             + G    A++ F      G+  D + L S +           G+QV  +  K+     
Sbjct: 291 HAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLD 350

Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
           V V ++LID+Y K  L  +A   F E+P +N V   A+++G  +       + +   M A
Sbjct: 351 VSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRA 410

Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
            G++ D     ALL AC+                                       GLV
Sbjct: 411 EGVEPDEVAYLALLSACS-------------------------------------HSGLV 433

Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
            +  + F+   H  +  +      +  M+ + GR G   E   L   M M    P    +
Sbjct: 434 EECRRYFSAIRH--DRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPM---APTVGVW 488

Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
            T++SAC     V +G E  E ++        P +Y  L ++   AG+  +  ++   M 
Sbjct: 489 QTLLSACRVHKNVTVGREAGETLLAIDG--DNPVNYVMLSNIFAEAGDWRECQRVRGAMR 546

Query: 361 DRG 363
            RG
Sbjct: 547 RRG 549


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 146/453 (32%), Positives = 227/453 (50%), Gaps = 26/453 (5%)

Query: 1   NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPL--PFNVVI 58
            +HAH   T  +   ++  +    L  T     ++LG        L   NP    +N ++
Sbjct: 45  QIHAHIITTSSIQDPIVSLR---FLTRTASAPFRDLGYSRRLFDLLT--NPFVSHYNAML 99

Query: 59  SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVK--DARFGKQVQAHVTKSG 116
             +  + SPL  L  +  M   G+  D   L SS    + +K     FG Q+ A +  +G
Sbjct: 100 RAYSLSRSPLEGLYMYRDMERQGVRAD--PLSSSFAVKSCIKLLSLLFGIQIHARIFING 157

Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
             +   + ++++DLY+      +A  +FDE+P K+ V  N L+S     K     L L  
Sbjct: 158 HQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFE 217

Query: 177 LM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
           +M  P      D  T   LL+ACA L+A EFG ++H Y+ +   N  +++   +SLI MY
Sbjct: 218 IMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLC--NSLISMY 275

Query: 235 GKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
            +CG + KA +VF+           K+VV W++M+     NG+ +E I+ +  M  NG +
Sbjct: 276 SRCGRMDKAYEVFDKM-------TEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVE 328

Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
           P +  F  V+SACSH G V  G+ +F+ M  ++ + P   HY C+VDLL RAG LD+A++
Sbjct: 329 PGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYE 388

Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
           LI  M  R       +MW  LL AC   G   LG+   +  +EL     G YV+L N+Y+
Sbjct: 389 LIMSMEVR----PDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYS 444

Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
               WD++ +LR+LMKEKG+     C+ IE+ G
Sbjct: 445 SAGNWDKVTELRKLMKEKGIYTTPCCTTIELNG 477


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 224/446 (50%), Gaps = 21/446 (4%)

Query: 3   HAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFC 62
            AH        +  +  Q+ L+  Y  C      G        +  R+ + +  ++S F 
Sbjct: 139 QAHAVAEKAGFLGRVPVQNALVTFYGAC---GQCGDARKVFDEMAERDVVSWTALLSAFT 195

Query: 63  RNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVF 122
           R G  + AL   + M V     +   L S L A  ++  AR GK V     +     ++ 
Sbjct: 196 RGGMFMEALGVLAEMDVTP---NEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLI 252

Query: 123 VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALG 182
           VG+AL+D+Y K   +  A  +FD +  ++ V    ++SG  + K  +  LE+   M   G
Sbjct: 253 VGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISG 312

Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
           +  D   LS +L ACA L A E GR VH Y+ RK   +  DV + +S+++MY KCG +  
Sbjct: 313 VKPDKVVLSTVLSACASLGALESGRWVHEYIERK--GIEWDVHVGTSVVDMYVKCGCLDT 370

Query: 243 ALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
           A+ +F         E+  K+V  W +++  +  +G  +E +  ++ M+ +G  P+EV F+
Sbjct: 371 AVSIFQ--------EMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFI 422

Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
           TV+ AC H+G V+ G + FE M   YKL P  +HY C+VDLL RAG + +A+ +I  M  
Sbjct: 423 TVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPM 482

Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
           R      V  W  LLSAC   G+ +  +       EL+    GIYV+LSN+YA    W +
Sbjct: 483 R----PGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVSDRWAD 538

Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
           +G+ R  M EKG++K+ G S IEV G
Sbjct: 539 VGKARGFMNEKGMQKEPGSSVIEVNG 564



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/375 (29%), Positives = 181/375 (48%), Gaps = 34/375 (9%)

Query: 47  NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH-----GIFLDTYALCSSLTASTSVKD 101
            PR   PFN +IS     G P  A + F+ + V      G   D Y L ++L A   +  
Sbjct: 73  RPRCAHPFNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGG 132

Query: 102 A-RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLS 160
             R G Q  A   K+G+L  V V +AL+  Y       DA  +FDE+  ++ V   ALLS
Sbjct: 133 GLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLS 192

Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
            +    ++   +E + ++  + +  +  TL+++L AC  L  A  G+ VH +  R+   L
Sbjct: 193 AFTRGGMF---MEALGVLAEMDVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKEL 249

Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
             ++ + ++L++MY KC  +  A +VF++        + +D+V WT M+    +     E
Sbjct: 250 --NLIVGNALLDMYVKCEKLDLARRVFDML-------LARDIVSWTVMISGLVQCKRPSE 300

Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE---HY- 336
            ++++ AM ++G KPD+V   TV+SAC+  G ++ G     W VH+Y    G E   H  
Sbjct: 301 ALEVFNAMQISGVKPDKVVLSTVLSACASLGALESG----RW-VHEYIERKGIEWDVHVG 355

Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQK 394
           + +VD+  + G LD A  +  EM  +     +VS W AL++  A H  G+  L       
Sbjct: 356 TSVVDMYVKCGCLDTAVSIFQEMPLK-----NVSSWNALINGFALHGRGREALDCFDRMV 410

Query: 395 ALELDPHNVGIYVML 409
           A  L P+ V    +L
Sbjct: 411 ASGLHPNEVTFITVL 425


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.139    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,993,921,498
Number of Sequences: 23463169
Number of extensions: 282944832
Number of successful extensions: 864930
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7303
Number of HSP's successfully gapped in prelim test: 3656
Number of HSP's that attempted gapping in prelim test: 740439
Number of HSP's gapped (non-prelim): 46210
length of query: 447
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 301
effective length of database: 8,933,572,693
effective search space: 2689005380593
effective search space used: 2689005380593
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 78 (34.7 bits)