BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048090
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
W ++ Y + G + E I+ Y+ L + E A+ + +A G IEY++ +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE-AWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 325 HDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
+L+P E + L + + G+ D+A + + L+ S W L +A + G
Sbjct: 63 ---ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQG 117
Query: 384 KFELGKLAAQKALELDPHN 402
++ QKALELDP +
Sbjct: 118 DYDEAIEYYQKALELDPRS 136
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 311 GQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
G IEY++ + +L+P E + L + + G+ D+A + + L+ S
Sbjct: 15 GDYDEAIEYYQKAL---ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSA 69
Query: 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
W L +A + G ++ QKALELDP + + L N Y K +DE
Sbjct: 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Score = 31.6 bits (70), Expect = 0.83, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
+ G+ D+A + + L+ S W L +A + G ++ QKALELDP +
Sbjct: 13 KQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70
Query: 405 IYVMLSNLYAKFCMWDE 421
+ L N Y K +DE
Sbjct: 71 AWYNLGNAYYKQGDYDE 87
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 372 WGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
W L +A + G ++ QKALELDP + + L N Y K +DE
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 53
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 329 LEPG--PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
++PG E + L + + G+ D+A + + L+ ++ W L +A + G ++
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYD 60
Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
QKALELDP+N + L N Y K +DE
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95
Score = 28.5 bits (62), Expect = 8.5, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 311 GQVKLGIEYFEWMVHDYKLEPG-PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
G IEY++ + +L+P E + L + + G+ D+A + + L+ ++
Sbjct: 23 GDYDEAIEYYQKAL---ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNA 77
Query: 370 SMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
W L +A + G ++ QKALELDP+N
Sbjct: 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
+S W L +A + G ++ QKALELDP+N + L N Y K +DE
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAK 415
+S W L +A + G ++ QKALELDP+N + L N Y K
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYK 55
Score = 32.0 bits (71), Expect = 0.64, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 329 LEPG--PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
++PG E + L + + G+ KA + + L+ ++ S W L +A + G ++
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELD--PNNASAWYNLGNAYYKQGDYQ 60
Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAK 415
QKALELDP+N + N Y K
Sbjct: 61 KAIEYYQKALELDPNNAKAWYRRGNAYYK 89
>pdb|2W82|A Chain A, The Structure Of Arda
pdb|2W82|B Chain B, The Structure Of Arda
pdb|2W82|C Chain C, The Structure Of Arda
pdb|2W82|D Chain D, The Structure Of Arda
Length = 165
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
++ L EY E+ +HDY+L VD GEL++ W++++E+
Sbjct: 36 KIGLNDEYEEYAIHDYEL-------PFTVDEYTSIGELNRLWEMVSEL 76
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
S W L +A + G ++ QKALELDP + + L N Y K +DE
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 55
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 367 SSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
+S W L +A + G ++ QKALEL P+N + L N Y K +DE
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 329 LEPG--PEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
++PG E + L + + G+ D+A + + L+ ++ W L +A + G ++
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELY--PNNAEAWYNLGNAYYKQGDYD 60
Query: 387 LGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
QKALEL P+N + L N Y K +DE
Sbjct: 61 EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 95
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHK 33
N + HQ E L ++C+ F+SR +L C H+
Sbjct: 15 NPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHE 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,437,109
Number of Sequences: 62578
Number of extensions: 544620
Number of successful extensions: 1546
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1527
Number of HSP's gapped (non-prelim): 22
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)