BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048090
(447 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/446 (36%), Positives = 253/446 (56%), Gaps = 17/446 (3%)
Query: 2 VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
VHA F G + Q+ L+ Y CR + T+ L L R + + ++S +
Sbjct: 141 VHAQVFRLGF--DADVFVQNGLIALYAKCRRLGSARTVFEGLP-LPERTIVSWTAIVSAY 197
Query: 62 CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
+NG P+ AL+ FS M + D AL S L A T ++D + G+ + A V K G
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257
Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
+ +L +YAK + A+++FD++ N + NA++SGY + +++ M
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317
Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
+ D ++++ + ACA + + E R ++ Y+ R + +DVF+ S+LI+M+ KCG V
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRS--DYRDDVFISSALIDMFAKCGSVE 375
Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
A VF+ +++DVV+W++M+ YG +G +E I LY AM G P++V F+
Sbjct: 376 GARLVFDRT-------LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFL 428
Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
++ AC+H+G V+ G +F M D+K+ P +HY+C++DLL RAG LD+A+++I M
Sbjct: 429 GLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPV 487
Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDE 421
+ V++WGALLSAC ELG+ AAQ+ +DP N G YV LSNLYA +WD
Sbjct: 488 Q----PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDR 543
Query: 422 IGQLRELMKEKGLKKDVGCSWIEVTG 447
+ ++R MKEKGL KDVGCSW+EV G
Sbjct: 544 VAEVRVRMKEKGLNKDVGCSWVEVRG 569
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 163/333 (48%), Gaps = 20/333 (6%)
Query: 48 PRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
PR + P+N +I + RN AL +S M + + D++ L A + + + G+
Sbjct: 80 PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139
Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--KNSVCANALLSGYCE 164
V A V + G+ + VFV + LI LYAK + A +F+ +P+ + V A++S Y +
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQ 199
Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
LE+ M + + D L ++L A L + GR +HA +++ + D+
Sbjct: 200 NGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL 259
Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
+ SL MY KCG V A +F+ + +++LW +M+ Y +NGY +E I +
Sbjct: 260 LI--SLNTMYAKCGQVATAKILFDKMK-------SPNLILWNAMISGYAKNGYAREAIDM 310
Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM-VHDYKLEPGPEHYSCLVDLL 343
+ M+ +PD ++ + ISAC+ G ++ +E++ DY+ + S L+D+
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMF 368
Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
+ G ++ A + + LDR V +W A++
Sbjct: 369 AKCGSVEGARLVFDRTLDR-----DVVVWSAMI 396
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 133/278 (47%), Gaps = 25/278 (8%)
Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC-- 163
KQ+ A + G S F+ + LI + I A +FD++P NA++ GY
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 164 ----EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
+A L ++L R+ P D FT LL+AC+GLS + GR VHA + R
Sbjct: 98 NHFQDALLMYSNMQLARVSP------DSFTFPHLLKACSGLSHLQMGRFVHAQVFR--LG 149
Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
DVF+Q+ LI +Y KC + A VF G L + +V WT+++ Y +NG
Sbjct: 150 FDADVFVQNGLIALYAKCRRLGSARTVFE--GLPLP---ERTIVSWTAIVSAYAQNGEPM 204
Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
E ++++ M KPD VA V+V++A + +K G +V LE P+ L
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVV-KMGLEIEPDLLISL 263
Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
+ + G++ A L ++M S ++ +W A++S
Sbjct: 264 NTMYAKCGQVATAKILFDKM-----KSPNLILWNAMIS 296
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 259 bits (661), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 221/400 (55%), Gaps = 15/400 (3%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
++ + + +I +NG A++ F M V G+ +D Y S L A + GKQ+
Sbjct: 233 KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQI 292
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
A + ++ + ++VGSALID+Y K +H A+ +FD + KN V A++ GY +
Sbjct: 293 HACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRA 352
Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
+++ M G+D DH+TL + ACA +S+ E G Q H I L + V + +
Sbjct: 353 EEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAI--TSGLIHYVTVSN 410
Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
SL+ +YGKCG + + ++FN E+N +D V WT+M+ Y + G E I+L++
Sbjct: 411 SLVTLYGKCGDIDDSTRLFN--------EMNVRDAVSWTAMVSAYAQFGRAVETIQLFDK 462
Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
M+ +G KPD V VISACS G V+ G YF+ M +Y + P HYSC++DL R+G
Sbjct: 463 MVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSG 522
Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
L++A + IN M W LLSAC + G E+GK AA+ +ELDPH+ Y
Sbjct: 523 RLEEAMRFINGM----PFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYT 578
Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
+LS++YA WD + QLR M+EK +KK+ G SWI+ G
Sbjct: 579 LLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKG 618
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 182/384 (47%), Gaps = 54/384 (14%)
Query: 36 LGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLT 94
+ + + + L R+ + +NV+I + +G A+K + + M L L + L
Sbjct: 88 ISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLK 147
Query: 95 ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
S+S GKQ+ V K G+ S + VGS L+ +YA + I DA+ +F + +N+V
Sbjct: 148 LSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVM 207
Query: 155 ANALLSGYC-----------------EAKLWAG-------------GLELVRLMPALGLD 184
N+L+ G ++ WA +E R M GL
Sbjct: 208 YNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLK 267
Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
D + ++L AC GL A G+Q+HA +IR N + +++ S+LI+MY KC + A
Sbjct: 268 MDQYPFGSVLPACGGLGAINEGKQIHACIIR--TNFQDHIYVGSALIDMYCKCKCLHYAK 325
Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
VF+ R++ K+VV WT+M+ YG+ G +E +K++ M +G PD I
Sbjct: 326 TVFD----RMK---QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAI 378
Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEML 360
SAC++ ++ G ++ H + G HY + LV L + G++D + +L NEM
Sbjct: 379 SACANVSSLEEGSQF-----HGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN 433
Query: 361 DRGHGSSSVSMWGALLSACHDCGK 384
R +VS W A++SA G+
Sbjct: 434 VR----DAVS-WTAMVSAYAQFGR 452
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 135/318 (42%), Gaps = 46/318 (14%)
Query: 46 LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
+ +N + + ++ + + G A+K F M GI D Y L +++A +V G
Sbjct: 331 MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG 390
Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
Q SG + V V ++L+ LY K I D+ +F+E+ V+++V A++S Y +
Sbjct: 391 SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQF 450
Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
++L M GL D TL+ ++ AC+
Sbjct: 451 GRAVETIQLFDKMVQHGLKPDGVTLTGVISACS--------------------------- 483
Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
+ GLV K + F L E I + ++ M+ ++ R+G +E ++
Sbjct: 484 ----------RAGLVEKGQRYFKLMTS--EYGIVPSIGHYSCMIDLFSRSGRLEEAMRFI 531
Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP-GPEHYSCLVDLLC 344
M PD + + T++SAC + G +++G E ++ +L+P P Y+ L +
Sbjct: 532 NGMPF---PPDAIGWTTLLSACRNKGNLEIGKWAAESLI---ELDPHHPAGYTLLSSIYA 585
Query: 345 RAGELDKAWKLINEMLDR 362
G+ D +L M ++
Sbjct: 586 SKGKWDSVAQLRRGMREK 603
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 138/334 (41%), Gaps = 48/334 (14%)
Query: 83 FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
+ +T+ + + A +K + + ++V + + ++F + L+ Y+K LI + E
Sbjct: 38 YPETFLYNNIVHAYALMKSSTYARRVFDRIPQP----NLFSWNNLLLAYSKAGLISEMES 93
Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-LMPALGLDYDHFTLSALLRACAGLS 201
F+++P ++ V N L+ GY + L ++ +M + TL +L+ +
Sbjct: 94 TFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNG 153
Query: 202 AAEFGRQVHAYMIR--------------------KCCNLGNDVF---------MQSSLIE 232
G+Q+H +I+ C + VF M +SL+
Sbjct: 154 HVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMG 213
Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
CG++ ALQ+F + KD V W +M+ +NG KE I+ + M + G
Sbjct: 214 GLLACGMIEDALQLFR--------GMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265
Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
K D+ F +V+ AC G + G + ++ + S L+D+ C+ L A
Sbjct: 266 LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGSALIDMYCKCKCLHYA 324
Query: 353 WKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
+ + M + +V W A++ G+ E
Sbjct: 325 KTVFDRMKQK-----NVVSWTAMVVGYGQTGRAE 353
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 219/398 (55%), Gaps = 18/398 (4%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
RN + + +IS + + AL+ M + + Y S L + + D R +
Sbjct: 125 RNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---L 181
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
+ K G S VFV SALID++AKL DA +FDE+ +++ N+++ G+ +
Sbjct: 182 HCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 241
Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
LEL + M G + TL+++LRAC GL+ E G Q H ++++ D+ + +
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK----YDQDLILNN 297
Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
+L++MY KCG + AL+VFN R DV+ W++M+ +NGY +E +KL+E M
Sbjct: 298 ALVDMYCKCGSLEDALRVFNQMKER-------DVITWSTMISGLAQNGYSQEALKLFERM 350
Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
+GTKP+ + V V+ ACSH G ++ G YF M Y ++P EHY C++DLL +AG+
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410
Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
LD A KL+NEM W LL AC L + AA+K + LDP + G Y +
Sbjct: 411 LDDAVKLLNEM----ECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTL 466
Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
LSN+YA WD + ++R M+++G+KK+ GCSWIEV
Sbjct: 467 LSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVN 504
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 166/329 (50%), Gaps = 27/329 (8%)
Query: 70 ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
A+K + HG++ D+ + S + G + H+ +G +F+ + LI+
Sbjct: 45 AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104
Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
+Y K L++DA +FD++P +N + ++S Y + K+ LEL+ LM + + +T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164
Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
S++LR+C G+S R +H +I++ L +DVF++S+LI+++ K G AL VF
Sbjct: 165 YSSVLRSCNGMSDV---RMLHCGIIKE--GLESDVFVRSALIDVFAKLGEPEDALSVF-- 217
Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
+ + D ++W S++G + +N ++L++ M G ++ +V+ AC+
Sbjct: 218 -----DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTG 272
Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
++LG++ VH K + + LVD+ C+ G L+ A ++ N+M +R V
Sbjct: 273 LALLELGMQAH---VHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKER-----DV 324
Query: 370 SMWGALLSACHDCGKFELGKLAAQKALEL 398
W ++S G +Q+AL+L
Sbjct: 325 ITWSTMISGLAQNG-------YSQEALKL 346
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 254 bits (650), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 146/431 (33%), Positives = 241/431 (55%), Gaps = 19/431 (4%)
Query: 19 FQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH 78
F + L+ Y+ C +L + + ++ R+ + + +I+ + R G A+K F M
Sbjct: 333 FCNTLLDMYSKC---GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389
Query: 79 VHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIH 138
GI D Y + + L + GK+V + ++ +FV +AL+D+YAK +
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 449
Query: 139 DAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSALLRAC 197
+AEL+F E+ VK+ + N ++ GY + L L L+ D T++ +L AC
Sbjct: 450 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 509
Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
A LSA + GR++H Y++R +D + +SL++MY KCG + L H L +
Sbjct: 510 ASLSAFDKGREIHGYIMRN--GYFSDRHVANSLVDMYAKCGAL--------LLAHMLFDD 559
Query: 258 I-NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
I +KD+V WT M+ YG +G+ KE I L+ M G + DE++FV+++ ACSH+G V G
Sbjct: 560 IASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 619
Query: 317 IEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
+F M H+ K+EP EHY+C+VD+L R G+L KA++ I M ++WGALL
Sbjct: 620 WRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENM----PIPPDATIWGALL 675
Query: 377 SACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
C +L + A+K EL+P N G YV+++N+YA+ W+++ +LR+ + ++GL+K
Sbjct: 676 CGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRK 735
Query: 437 DVGCSWIEVTG 447
+ GCSWIE+ G
Sbjct: 736 NPGCSWIEIKG 746
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 162/341 (47%), Gaps = 17/341 (4%)
Query: 21 SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
S+L L YT C K + + +K L +N+++++ ++G ++ F M
Sbjct: 133 SKLSLMYTNCGDLKEASRVFDEVKI---EKALFWNILMNELAKSGDFSGSIGLFKKMMSS 189
Query: 81 GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
G+ +D+Y + +S++ G+Q+ + KSG+ VG++L+ Y K + A
Sbjct: 190 GVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSA 249
Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
+FDE+ ++ + N++++GY L GL + M G++ D T+ ++ CA
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS 309
Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
GR VH+ ++ C + D F ++L++MY KCG + A VF R
Sbjct: 310 RLISLGRAVHSIGVKACFSR-EDRFC-NTLLDMYSKCGDLDSAKAVFREMSDR------- 360
Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
VV +TSM+ Y R G E +KL+E M G PD V++ C+ + G
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 420
Query: 321 EWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEM 359
EW+ + + G + + + L+D+ + G + +A + +EM
Sbjct: 421 EWIKEN---DLGFDIFVSNALMDMYAKCGSMQEAELVFSEM 458
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/414 (24%), Positives = 194/414 (46%), Gaps = 28/414 (6%)
Query: 32 HKKNLGTLTNCLKFLNP--RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYA 88
++ +L T+++C+ + R+ N + FC +G+ A+K + V G + +D
Sbjct: 40 NRASLRTVSDCVDSITTFDRSVTDANTQLRRFCESGNLENAVK---LLCVSGKWDIDPRT 96
Query: 89 LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
LCS L K + GK+V + +G++ +GS L +Y + +A +FDE+
Sbjct: 97 LCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVK 156
Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
++ ++ N L++ ++ ++G + L + M + G++ D +T S + ++ + L + G Q
Sbjct: 157 IEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQ 216
Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
+H ++++ G + +SL+ Y K V A +VF+ R DV+ W S+
Sbjct: 217 LHGFILKS--GFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER-------DVISWNSI 267
Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
+ Y NG ++ + ++ ML++G + D V+V + C+ + + LG VH
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-----RAVHSIG 322
Query: 329 LEP--GPEHYSC--LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
++ E C L+D+ + G+LD A + EM DR S VS + +
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR----SVVSYTSMIAGYAREGLA 378
Query: 385 FELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
E KL + E +V + N A++ + DE ++ E +KE L D+
Sbjct: 379 GEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDI 432
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/385 (35%), Positives = 222/385 (57%), Gaps = 13/385 (3%)
Query: 61 FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
+ RNGSP AL + M I +++ +L A +KD R G+ + A + K
Sbjct: 211 YSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVD 270
Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
V + L+ LY + L DA +FD + +N V N+L+S + L R M
Sbjct: 271 QVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQE 330
Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
+ + TL+ +L AC+ ++A G+++HA +++ DV + +SL++MYGKCG V
Sbjct: 331 EMIGFSWATLTTILPACSRVAALLTGKEIHAQILKS--KEKPDVPLLNSLMDMYGKCGEV 388
Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
+ +VF++ + KD+ W ML Y NG +EVI L+E M+ +G PD + F
Sbjct: 389 EYSRRVFDVM-------LTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITF 441
Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
V ++S CS TG + G+ FE M ++++ P EHY+CLVD+L RAG++ +A K+I M
Sbjct: 442 VALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMP 501
Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
+ S S+WG+LL++C G +G++AA++ L+PHN G YVM+SN+YA MWD
Sbjct: 502 FK----PSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWD 557
Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
+ ++RE+MK++G+KK+ GCSW++V
Sbjct: 558 NVDKIREMMKQRGVKKEAGCSWVQV 582
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 13/188 (6%)
Query: 191 SALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-L 249
+ LL AC + G ++ + +I +L ++ + S LI ++ C + A ++F+ +
Sbjct: 135 TDLLHACISAKSLHHGIKICS-LILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDV 193
Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
L E +W +M Y RNG ++ + +Y ML + +P + + AC
Sbjct: 194 TDSSLLTE-----KVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVD 248
Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
+++G +V K + Y+ L+ L +G D A K+ + M +R +V
Sbjct: 249 LKDLRVGRGIHAQIVK-RKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSER-----NV 302
Query: 370 SMWGALLS 377
W +L+S
Sbjct: 303 VTWNSLIS 310
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 241/447 (53%), Gaps = 25/447 (5%)
Query: 2 VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVVI 58
VHAH ++ IF+ +++ T G+L K R+ + + +I
Sbjct: 82 VHAHILQS--------IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLI 133
Query: 59 SDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
S + ++ P AL F+ M G + + L S + A+ + + G Q+ K G+
Sbjct: 134 SGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFD 193
Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
S+V VGSAL+DLY + L+ DA+L+FD + +N V NAL++G+ LEL + M
Sbjct: 194 SNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGM 253
Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
G HF+ ++L AC+ E G+ VHAYMI+ L F ++L++MY K G
Sbjct: 254 LRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLV--AFAGNTLLDMYAKSG 311
Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
+ A ++F+ R DVV W S+L Y ++G+ KE + +E M G +P+E+
Sbjct: 312 SIHDARKIFDRLAKR-------DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEI 364
Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
+F++V++ACSH+G + G Y+E M D + P HY +VDLL RAG+L++A + I E
Sbjct: 365 SFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423
Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
M + ++W ALL+AC ELG AA+ ELDP + G +V+L N+YA
Sbjct: 424 MPI----EPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGR 479
Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEV 445
W++ ++R+ MKE G+KK+ CSW+E+
Sbjct: 480 WNDAARVRKKMKESGVKKEPACSWVEI 506
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 176/348 (50%), Gaps = 29/348 (8%)
Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
G+ V AH+ +S + + +G+ L+++YAK + +A +F+++P ++ V L+SGY +
Sbjct: 79 GRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQ 138
Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
L M G + FTLS++++A A G Q+H + ++ C ++V
Sbjct: 139 HDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK--CGFDSNV 196
Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
+ S+L+++Y + GL+ A VF+ LE +++ V W +++ + R ++ ++L
Sbjct: 197 HVGSALLDLYTRYGLMDDAQLVFDA----LE---SRNDVSWNALIAGHARRSGTEKALEL 249
Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYS----CLV 340
++ ML +G +P ++ ++ ACS TG ++ G +W VH Y ++ G + + L+
Sbjct: 250 FQGMLRDGFRPSHFSYASLFGACSSTGFLEQG----KW-VHAYMIKSGEKLVAFAGNTLL 304
Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSAC--HDCGKFELGKLAAQKALEL 398
D+ ++G + A K+ + + R V W +LL+A H GK + + + +
Sbjct: 305 DMYAKSGSIHDARKIFDRLAKR-----DVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359
Query: 399 DPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
P+ + +L+ + + DE ELMK+ G+ V +W VT
Sbjct: 360 RPNEISFLSVLTAC-SHSGLLDEGWHYYELMKKDGI---VPEAWHYVT 403
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
KC + +Q + H L+ D+V+ ++L +Y + G +E K++E M +
Sbjct: 69 KCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKM----PQR 124
Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMV 324
D V + T+IS S + + +F M+
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQML 153
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 226/400 (56%), Gaps = 14/400 (3%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
++ + + +I F RNGS A+ F M G+ + + S L A+ V+D RFG+ V
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSV 226
Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
++G + VF+GS+L+D+Y K DA+ +FDE+P +N V AL++GY +++
Sbjct: 227 HGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRC 286
Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
+ G+ + M + + TLS++L ACA + A GR+VH YMI+ +
Sbjct: 287 FDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTA--G 344
Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
++LI++Y KCG + +A+ VF RL K+V WT+M+ + +GY ++ L+
Sbjct: 345 TTLIDLYVKCGCLEEAILVFE----RLH---EKNVYTWTAMINGFAAHGYARDAFDLFYT 397
Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
ML + P+EV F+ V+SAC+H G V+ G F M + +EP +HY+C+VDL R G
Sbjct: 398 MLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKG 457
Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
L++A LI M + +WGAL +C +ELGK AA + ++L P + G Y
Sbjct: 458 LLEEAKALIERM----PMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYT 513
Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
+L+NLY++ WDE+ ++R+ MK++ + K G SWIEV G
Sbjct: 514 LLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKG 553
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 155/339 (45%), Gaps = 17/339 (5%)
Query: 74 FSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAK 133
+ M +G+ + L A ++D+ Q AH+ K G S FV ++LI Y+
Sbjct: 92 YRHMRRNGVIPSRHTFPPLLKAVFKLRDSN-PFQFHAHIVKFGLDSDPFVRNSLISGYSS 150
Query: 134 LLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSAL 193
L A +FD K+ V A++ G+ + + M G+ + T+ ++
Sbjct: 151 SGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSV 210
Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
L+A + FGR VH + + + DVF+ SSL++MYGKC A +VF+ R
Sbjct: 211 LKAAGKVEDVRFGRSVHGLYL-ETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSR 269
Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
+VV WT+++ Y ++ F + + ++E ML + P+E +V+SAC+H G +
Sbjct: 270 -------NVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGAL 322
Query: 314 KLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWG 373
G +M+ + +E + L+DL + G L++A + + ++ +V W
Sbjct: 323 HRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEK-----NVYTWT 376
Query: 374 ALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
A+++ A H + + + P+ V +LS
Sbjct: 377 AMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLS 415
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 244 bits (624), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 150/482 (31%), Positives = 246/482 (51%), Gaps = 50/482 (10%)
Query: 2 VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
V H + + S L+ Y+ C N+ + RN + +N +I+ F
Sbjct: 172 VQVHSLIAKSPFLSDVYIGSALVDMYSKC---GNVNDAQRVFDEMGDRNVVSWNSLITCF 228
Query: 62 CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL-SS 120
+NG + AL F M + D L S ++A S+ + G++V V K+ L +
Sbjct: 229 EQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRND 288
Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK-------------- 166
+ + +A +D+YAK I +A +FD +P++N + +++SGY A
Sbjct: 289 IILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAE 348
Query: 167 --------LWAG---------GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQV 209
L AG L L L+ + H++ + +L+ACA L+ G Q
Sbjct: 349 RNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQA 408
Query: 210 HAYMIRKCCNLG----NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
H ++++ +D+F+ +SLI+MY KCG V + VF + +D V W
Sbjct: 409 HVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-------MERDCVSW 461
Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
+M+ + +NGY E ++L+ ML +G KPD + + V+SAC H G V+ G YF M
Sbjct: 462 NAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTR 521
Query: 326 DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
D+ + P +HY+C+VDLL RAG L++A +I EM + SV +WG+LL+AC
Sbjct: 522 DFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQ---PDSV-IWGSLLAACKVHRNI 577
Query: 386 ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
LGK A+K LE++P N G YV+LSN+YA+ W+++ +R+ M+++G+ K GCSWI++
Sbjct: 578 TLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKI 637
Query: 446 TG 447
G
Sbjct: 638 QG 639
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 184/349 (52%), Gaps = 30/349 (8%)
Query: 43 LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
+ + R+ +N ++S F ++ AL F+ MH G L+ Y+ S L+A + + D
Sbjct: 109 FRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDM 168
Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
G QV + + KS +LS V++GSAL+D+Y+K ++DA+ +FDE+ +N V N+L++ +
Sbjct: 169 NKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCF 228
Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
+ L++ ++M ++ D TL++++ ACA LSA + G++VH ++ K L N
Sbjct: 229 EQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVV-KNDKLRN 287
Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI----------- 258
D+ + ++ ++MY KC + +A +F+ ++G+ +
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMA 347
Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
++VV W +++ Y +NG +E + L+ + P +F ++ AC+ ++ LG++
Sbjct: 348 ERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQ 407
Query: 319 -YFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDR 362
+ + H +K + G E + L+D+ + G +++ + + +M++R
Sbjct: 408 AHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMER 456
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 41/346 (11%)
Query: 83 FLDTYALCSSLTASTSVK-DARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAE 141
F D+ L + K A + + V A V KSG+ + +F+ + LID Y+K + D
Sbjct: 16 FTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGR 75
Query: 142 LMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL-------------------- 181
+FD++P +N N++++G + L R MP
Sbjct: 76 QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135
Query: 182 -----------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
G + ++ +++L AC+GL+ G QVH+ +I K L +DV++ S+L
Sbjct: 136 ALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHS-LIAKSPFL-SDVYIGSAL 193
Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
++MY KCG V A +VF+ G R +VV W S++ + +NG E + +++ ML
Sbjct: 194 VDMYSKCGNVNDAQRVFDEMGDR-------NVVSWNSLITCFEQNGPAVEALDVFQMMLE 246
Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
+ +PDEV +VISAC+ +K+G E +V + KL + VD+ + +
Sbjct: 247 SRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIK 306
Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
+A + + M R + + + G ++A + K+A + +
Sbjct: 307 EARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVV 352
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 229/418 (54%), Gaps = 15/418 (3%)
Query: 29 TCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYA 88
TC + ++ + + ++ + +N +I+ + ++G AL+ M + D++
Sbjct: 185 TCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFT 244
Query: 89 LCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
L S L + D GK++ +V + G S V++GS+L+D+YAK I D+E +F +
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304
Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
++ + N+L++GY + + L L R M + S+++ ACA L+ G+Q
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364
Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTS 267
+H Y++R G+++F+ S+L++MY KCG + A ++F+ +N D V WT+
Sbjct: 365 LHGYVLRG--GFGSNIFIASALVDMYSKCGNIKAARKIFD--------RMNVLDEVSWTA 414
Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
++ + +G+ E + L+E M G KP++VAFV V++ACSH G V YF M Y
Sbjct: 415 IIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVY 474
Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
L EHY+ + DLL RAG+L++A+ I++M G S+W LLS+C EL
Sbjct: 475 GLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTG----SVWSTLLSSCSVHKNLEL 530
Query: 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
+ A+K +D N+G YV++ N+YA W E+ +LR M++KGL+K CSWIE+
Sbjct: 531 AEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEM 588
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 171/385 (44%), Gaps = 69/385 (17%)
Query: 43 LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
K L L + VI F AL +F M G D S L + T + D
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLL--------------------------- 135
RFG+ V + + G ++ G+AL+++YAKLL
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 136 ---------LIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYD 186
I +F+ +P K+ V N +++GY ++ ++ L +VR M L D
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241
Query: 187 HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQV 246
FTLS++L + G+++H Y+IRK + +DV++ SSL++MY K + + +V
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRK--GIDSDVYIGSSLVDMYAKSARIEDSERV 299
Query: 247 FNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
F+ RL +D + W S++ Y +NG + E ++L+ M+ KP VAF +VI A
Sbjct: 300 FS----RL---YCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPA 352
Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEM--L 360
C+H + LG + +H Y L G S LVD+ + G + A K+ + M L
Sbjct: 353 CAHLATLHLGKQ-----LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVL 407
Query: 361 DR-------------GHGSSSVSMW 372
D GHG +VS++
Sbjct: 408 DEVSWTAIIMGHALHGHGHEAVSLF 432
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 132/322 (40%), Gaps = 46/322 (14%)
Query: 97 TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCAN 156
T +K KQ+ A ++ LS S +I +Y L L+H+A L+F + +
Sbjct: 16 TRIKSKSQAKQLHAQFIRTQSLSHT-SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWK 74
Query: 157 ALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
+++ + + L++ L M A G DH ++L++C + FG VH +++R
Sbjct: 75 SVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVR- 133
Query: 217 CCNLGNDVFMQSSLIEMYGK---CGLVTKALQVFNLAGHR-------------------- 253
+ D++ ++L+ MY K G VF+ R
Sbjct: 134 -LGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGI 192
Query: 254 ------LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
E KDVV + +++ Y ++G +++ +++ M KPD +V+
Sbjct: 193 DSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIF 252
Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRG 363
S V G E +H Y + G + S LVD+ ++ ++ + ++ + + R
Sbjct: 253 SEYVDVIKGKE-----IHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRD 307
Query: 364 HGSSSVSMWGALLSACHDCGKF 385
S W +L++ G++
Sbjct: 308 GIS-----WNSLVAGYVQNGRY 324
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 130/365 (35%), Positives = 219/365 (60%), Gaps = 15/365 (4%)
Query: 83 FLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAEL 142
F TY L + + + +V GK++ AH+T+ G+ S V++ + L+D+YA+ + A
Sbjct: 179 FTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASY 238
Query: 143 MFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGL 200
+F +PV+N V +A+++ Y + L R M D + T+ ++L+ACA L
Sbjct: 239 VFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASL 298
Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
+A E G+ +H Y++R+ L + + + S+L+ MYG+CG + +VF+ R+ ++
Sbjct: 299 AALEQGKLIHGYILRR--GLDSILPVISALVTMYGRCGKLEVGQRVFD----RMH---DR 349
Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
DVV W S++ YG +GY K+ I+++E ML NG P V FV+V+ ACSH G V+ G F
Sbjct: 350 DVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLF 409
Query: 321 EWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
E M D+ ++P EHY+C+VDLL RA LD+A K++ +M +WG+LL +C
Sbjct: 410 ETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDM----RTEPGPKVWGSLLGSCR 465
Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGC 440
G EL + A+++ L+P N G YV+L+++YA+ MWDE+ ++++L++ +GL+K G
Sbjct: 466 IHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525
Query: 441 SWIEV 445
W+EV
Sbjct: 526 CWMEV 530
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 156/345 (45%), Gaps = 41/345 (11%)
Query: 55 NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYAL---CSSLTASTSVKDARFGKQVQAH 111
N +I C+ G A++ S TY L C +S S DA +V H
Sbjct: 50 NQLIQSLCKEGKLKQAIRVLS--QESSPSQQTYELLILCCGHRSSLS--DAL---RVHRH 102
Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
+ +G F+ + LI +Y+ L + A +FD+ + NAL A
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 172 LELVRLMPALGLDYDHFTLSALLRACAG----LSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
L L M +G++ D FT + +L+AC ++ G+++HA++ R+ + V++
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRR--GYSSHVYIM 220
Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
++L++MY + G V A VF G ++VV W++M+ Y +NG E ++ +
Sbjct: 221 TTLVDMYARFGCVDYASYVFG-------GMPVRNVVSWSAMIACYAKNGKAFEALRTFRE 273
Query: 288 ML--MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVD 341
M+ + P+ V V+V+ AC+ ++ G ++H Y L G + S LV
Sbjct: 274 MMRETKDSSPNSVTMVSVLQACASLAALEQGK-----LIHGYILRRGLDSILPVISALVT 328
Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA--CHDCGK 384
+ R G+L+ ++ + M DR V W +L+S+ H GK
Sbjct: 329 MYGRCGKLEVGQRVFDRMHDR-----DVVSWNSLISSYGVHGYGK 368
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFM--HVHGIFLDTYALCSSLTASTSVKDARFGK 106
RN + ++ +I+ + +NG AL+TF M ++ + S L A S+ GK
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGK 305
Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
+ ++ + G S + V SAL+ +Y + + + +FD + ++ V N+L+S Y
Sbjct: 306 LIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHG 365
Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIR 215
+++ M A G T ++L AC+ E G+++ M R
Sbjct: 366 YGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWR 414
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 28/235 (11%)
Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
T L+ C S+ +VH +++ + D F+ + LI MY G V A +VF+
Sbjct: 79 TYELLILCCGHRSSLSDALRVHRHILDNGSD--QDPFLATKLIGMYSDLGSVDYARKVFD 136
Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
R + +W ++ G+ +EV+ LY M G + D + V+ AC
Sbjct: 137 KTRKR-------TIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACV 189
Query: 309 HT----GQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEML 360
+ + G E +H + G + + LVD+ R G +D A + M
Sbjct: 190 ASECTVNHLMKGKE-----IHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMP 244
Query: 361 DRGHGSSSVSMWGALLSACHDCGK-FELGKLAAQKALELDPHNVGIYVMLSNLYA 414
R +V W A+++ GK FE + + E + M+S L A
Sbjct: 245 VR-----NVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQA 294
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/414 (33%), Positives = 222/414 (53%), Gaps = 18/414 (4%)
Query: 37 GTLTNCLKFLN---PRNPLPFNVVISDFCRNGS-PLYALKTFSFMHVHG-IFLDTYALCS 91
G++ +C K + + + + +I+ + +N + A+ FS M G + + + S
Sbjct: 319 GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS 378
Query: 92 SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
+ A ++ D R GKQV K G S+ V +++I ++ K + DA+ F+ + KN
Sbjct: 379 AFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKN 438
Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
V N L G C + +L+ + L FT ++LL A + + G Q+H+
Sbjct: 439 LVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHS 498
Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
+++ + V ++LI MY KCG + A +VFN N++V+ WTSM+
Sbjct: 499 QVVKLGLSCNQPVC--NALISMYSKCGSIDTASRVFNFME-------NRNVISWTSMITG 549
Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP 331
+ ++G+ V++ + M+ G KP+EV +V ++SACSH G V G +F M D+K++P
Sbjct: 550 FAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609
Query: 332 GPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLA 391
EHY+C+VDLLCRAG L A++ IN M + V +W L AC ELGKLA
Sbjct: 610 KMEHYACMVDLLCRAGLLTDAFEFINTM----PFQADVLVWRTFLGACRVHSNTELGKLA 665
Query: 392 AQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
A+K LELDP+ Y+ LSN+YA W+E ++R MKE+ L K+ GCSWIEV
Sbjct: 666 ARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEV 719
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 97/430 (22%), Positives = 188/430 (43%), Gaps = 50/430 (11%)
Query: 43 LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
++ R+ + ++ +++ + NG L A+K F G+ + Y + + A ++
Sbjct: 123 MRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFV 182
Query: 103 RFGKQVQAHVTKSG-WLSSVFVGSALIDLYAK-LLLIHDAELMFDEIPVKNSVCANALLS 160
G+ + K+G + S V VG +LID++ K +A +FD++ N V +++
Sbjct: 183 GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMIT 242
Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
+ + M G + D FTLS++ ACA L G+Q+H++ IR L
Sbjct: 243 RCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS--GL 300
Query: 221 GNDVFMQSSLIEMYGKC---GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRN-G 276
+DV + SL++MY KC G V +VF+ R+E + V+ WT+++ Y +N
Sbjct: 301 VDDV--ECSLVDMYAKCSADGSVDDCRKVFD----RME---DHSVMSWTALITGYMKNCN 351
Query: 277 YFKEVIKLYEAMLMNG-TKPDEVAFVTVISACSHTGQVKLGIEYF--------------- 320
E I L+ M+ G +P+ F + AC + ++G +
Sbjct: 352 LATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA 411
Query: 321 ----EWMVHDYKLEPGPE-----------HYSCLVDLLCRAGELDKAWKLINEMLDRGHG 365
V ++E Y+ +D CR ++A+KL++E+ +R G
Sbjct: 412 NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELG 471
Query: 366 SSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH-NVGIYVMLSNLYAKFCMWDEIGQ 424
S+ + + +LLS + G G+ + ++L N + L ++Y+K D +
Sbjct: 472 VSAFT-FASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530
Query: 425 LRELMKEKGL 434
+ M+ + +
Sbjct: 531 VFNFMENRNV 540
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 150/333 (45%), Gaps = 22/333 (6%)
Query: 50 NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
N + + ++I+ + G P A++ F M + G D + L S +A +++ GKQ+
Sbjct: 233 NVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLH 292
Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLL---IHDAELMFDEIPVKNSVCANALLSGYCE-A 165
+ +SG + V +L+D+YAK + D +FD + + + AL++GY +
Sbjct: 293 SWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNC 350
Query: 166 KLWAGGLELVRLMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
L + L M G ++ +HFT S+ +AC LS G+QV ++ L ++
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR--GLASNS 408
Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
+ +S+I M+ K + A + F E K++V + + L RN F++ KL
Sbjct: 409 SVANSVISMFVKSDRMEDAQRAF-------ESLSEKNLVSYNTFLDGTCRNLNFEQAFKL 461
Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
+ F +++S ++ G ++ G E V L + L+ +
Sbjct: 462 LSEITERELGVSAFTFASLLSGVANVGSIRKG-EQIHSQVVKLGLSCNQPVCNALISMYS 520
Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
+ G +D A ++ N M +R +V W ++++
Sbjct: 521 KCGSIDTASRVFNFMENR-----NVISWTSMIT 548
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 13/231 (5%)
Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGL-DYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
A+ L+ + A G + + LM G+ D T S+LL++C G+ VHA +
Sbjct: 29 ADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARL 88
Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
I ++ D + +SLI +Y K G KA VF R G+ +DVV W++M+ YG
Sbjct: 89 IE--FDIEPDSVLYNSLISLYSKSGDSAKAEDVFETM--RRFGK--RDVVSWSAMMACYG 142
Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
NG + IK++ L G P++ + VI ACS++ V +G +++ E
Sbjct: 143 NNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDV 202
Query: 334 EHYSCLVDLLCRA-GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
L+D+ + + A+K+ ++M +V W +++ C G
Sbjct: 203 CVGCSLIDMFVKGENSFENAYKVFDKM-----SELNVVTWTLMITRCMQMG 248
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 143/316 (45%), Gaps = 24/316 (7%)
Query: 70 ALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALI 128
A+ M GI +D+ S L + +D R GK V A + + + ++LI
Sbjct: 45 AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104
Query: 129 DLYAKLLLIHDAELMFDEIPV---KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY 185
LY+K AE +F+ + ++ V +A+++ Y +++ LGL
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164
Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC-GLVTKAL 244
+ + +A++RAC+ GR +++ K + +DV + SLI+M+ K A
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLM-KTGHFESDVCVGCSLIDMFVKGENSFENAY 223
Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
+VF+ E+N VV WT M+ + G+ +E I+ + M+++G + D+ +V
Sbjct: 224 KVFDKMS-----ELN--VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVF 276
Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA---GELDKAWKLINEMLD 361
SAC+ + LG + W + ++ + LVD+ + G +D K+ + M D
Sbjct: 277 SACAELENLSLGKQLHSWAIRSGLVD---DVECSLVDMYAKCSADGSVDDCRKVFDRMED 333
Query: 362 RGHGSSSVSMWGALLS 377
SV W AL++
Sbjct: 334 H-----SVMSWTALIT 344
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 238 bits (608), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 134/431 (31%), Positives = 233/431 (54%), Gaps = 17/431 (3%)
Query: 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
I S L+ Y CR + N N + + F +IS + NG + +L+ F +
Sbjct: 375 IFLTSALIDAYFKCR---GVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRW 431
Query: 77 MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
+ I + L S L + + G+++ + K G+ + +G A+ID+YAK
Sbjct: 432 LVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 491
Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
++ A +F+ + ++ V N++++ ++ + +++ R M G+ YD ++SA L A
Sbjct: 492 MNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSA 551
Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
CA L + FG+ +H +MI+ +L +DV+ +S+LI+MY KCG + A+ VF
Sbjct: 552 CANLPSESFGKAIHGFMIKH--SLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE---- 605
Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACSHTGQVKL 315
K++V W S++ G +G K+ + L+ M+ +G +PD++ F+ +IS+C H G V
Sbjct: 606 ---KNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDE 662
Query: 316 GIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
G+ +F M DY ++P EHY+C+VDL RAG L +A++ + M +WG L
Sbjct: 663 GVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSM----PFPPDAGVWGTL 718
Query: 376 LSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
L AC EL ++A+ K ++LDP N G YV++SN +A W+ + ++R LMKE+ ++
Sbjct: 719 LGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQ 778
Query: 436 KDVGCSWIEVT 446
K G SWIE+
Sbjct: 779 KIPGYSWIEIN 789
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 178/385 (46%), Gaps = 30/385 (7%)
Query: 10 GLLLICLIIFQ----SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNG 65
GL+++ + F+ + L+ Y+ C + L + ++ + + +N +IS + ++G
Sbjct: 263 GLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKL---FRMMSRADTVTWNCMISGYVQSG 319
Query: 66 SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGS 125
+L F M G+ D S L + + ++ + KQ+ ++ + +F+ S
Sbjct: 320 LMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTS 379
Query: 126 ALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY 185
ALID Y K + A+ +F + + V A++SGY L+ LE+ R + + +
Sbjct: 380 ALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISP 439
Query: 186 DHFTLSALLRACAGLSAAEFGRQVHAYMIRKC----CNLGNDVFMQSSLIEMYGKCGLVT 241
+ TL ++L L A + GR++H ++I+K CN+G ++I+MY KCG +
Sbjct: 440 NEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIG------CAVIDMYAKCGRMN 493
Query: 242 KALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFV 301
A ++F R D+V W SM+ ++ I ++ M ++G D V+
Sbjct: 494 LAYEIFERLSKR-------DIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSIS 546
Query: 302 TVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
+SAC++ G +M+ + L S L+D+ + G L A + M +
Sbjct: 547 AALSACANLPSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKE 605
Query: 362 RGHGSSSVSMWGALLSACHDCGKFE 386
+ ++ W ++++AC + GK +
Sbjct: 606 K-----NIVSWNSIIAACGNHGKLK 625
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 159/330 (48%), Gaps = 23/330 (6%)
Query: 54 FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
+NV+++ + + G+ +K FS M + I + L+ S G Q+ V
Sbjct: 207 WNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVV 266
Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
SG + ++L+ +Y+K DA +F + ++V N ++SGY ++ L L
Sbjct: 267 VSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLT 326
Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
M + G+ D T S+LL + + E+ +Q+H Y++R +L D+F+ S+LI+
Sbjct: 327 FFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISL--DIFLTSALIDA 384
Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
Y KC V+ A +F+ + DVV++T+M+ Y NG + + ++++ ++
Sbjct: 385 YFKCRGVSMAQNIFSQCN-------SVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKI 437
Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGEL 349
P+E+ V+++ +KLG E +H + ++ G ++ ++D+ + G +
Sbjct: 438 SPNEITLVSILPVIGILLALKLGRE-----LHGFIIKKGFDNRCNIGCAVIDMYAKCGRM 492
Query: 350 DKAWKLINEMLDRGHGSSSVSMWGALLSAC 379
+ A+++ + R + W ++++ C
Sbjct: 493 NLAYEIFERLSKR-----DIVSWNSMITRC 517
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 20/292 (6%)
Query: 22 RLMLPYTTCRHKKNLGTLTNCLKF-----LNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
R++ Y C G+ ++C K L + P+N +IS F RNG AL +
Sbjct: 75 RILGMYAMC------GSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFK 128
Query: 77 MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
M G+ D + A ++K+ + + V+ G + FV S+LI Y +
Sbjct: 129 MLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGK 188
Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
I +FD + K+ V N +L+GY + ++ +M + + T +L
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSV 248
Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
CA + G Q+H ++ + + ++SL+ MY KCG A ++F +
Sbjct: 249 CASKLLIDLGVQLHGLVVVSGVDFEGSI--KNSLLSMYSKCGRFDDASKLFRMMSR---- 302
Query: 257 EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
D V W M+ Y ++G +E + + M+ +G PD + F +++ + S
Sbjct: 303 ---ADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 15/223 (6%)
Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
LS LL+AC+ + G+QVHA++I ++ D + ++ MY CG + ++F
Sbjct: 38 LSLLLQACSNPNLLRQGKQVHAFLIVN--SISGDSYTDERILGMYAMCGSFSDCGKMF-- 93
Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
+RL+ + W S++ + RNG + + Y ML G PD F ++ AC
Sbjct: 94 --YRLDLR-RSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVA 150
Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
K GI++ V ++ S L+ G++D KL + +L +
Sbjct: 151 LKNFK-GIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQK-----DC 204
Query: 370 SMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVGIYVMLS 410
+W +L+ CG + + + + ++ P+ V +LS
Sbjct: 205 VIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLS 247
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 117/288 (40%), Gaps = 21/288 (7%)
Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCA--NALLS 160
R GKQV A + + + ++ +YA D MF + ++ S N+++S
Sbjct: 52 RQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIIS 111
Query: 161 GYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
+ L L M G+ D T L++AC L + ++ +L
Sbjct: 112 SFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALK----NFKGIDFLSDTVSSL 167
Query: 221 GNDV--FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
G D F+ SSLI+ Y + G + ++F+ + KD V+W ML Y + G
Sbjct: 168 GMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV-------LQKDCVIWNVMLNGYAKCGAL 220
Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
VIK + M M+ P+ V F V+S C+ + LG++ +V G S
Sbjct: 221 DSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNS- 279
Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
L+ + + G D A KL M+ R + W ++S G E
Sbjct: 280 LLSMYSKCGRFDDASKLF-RMMSRADTVT----WNCMISGYVQSGLME 322
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 238 bits (607), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 235/445 (52%), Gaps = 18/445 (4%)
Query: 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
+H + GLL + + L+ Y+ C ++L RN + ++ +++
Sbjct: 242 QIHCITIKNGLL--GFVALSNALVTMYSKC---ESLNEACKMFDSSGDRNSITWSAMVTG 296
Query: 61 FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
+ +NG L A+K FS M GI Y + L A + + GKQ+ + + K G+
Sbjct: 297 YSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERH 356
Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
+F +AL+D+YAK + DA FD + ++ +L+SGY + L L R M
Sbjct: 357 LFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKT 416
Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
G+ + T++++L+AC+ L+ E G+QVH + I+ G +V + S+L MY KCG
Sbjct: 417 AGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH--GFGLEVPIGSALSTMYSKCG-- 472
Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
+L+ NL R NKDVV W +M+ NG E ++L+E ML G +PD+V F
Sbjct: 473 --SLEDGNLVFRRTP---NKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTF 527
Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
V +ISACSH G V+ G YF M L+P +HY+C+VDLL RAG+L +A + I E
Sbjct: 528 VNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFI-ESA 586
Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
+ HG + +W LLSAC + GK ELG A +K + L YV LS +Y
Sbjct: 587 NIDHG---LCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMR 643
Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
++ ++ + M+ G+ K+VGCSWIE+
Sbjct: 644 DVERVWKHMRANGVSKEVGCSWIEL 668
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 164/340 (48%), Gaps = 30/340 (8%)
Query: 49 RNPLPFNVVISDFCRNG---SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
++ + +N +I+ + +NG S ++ F M I + Y L A +S++ + G
Sbjct: 78 KDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVG 137
Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
+Q A V K ++V ++L+ +Y K L+ D +F +P +N+ + ++SGY
Sbjct: 138 RQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATR 197
Query: 166 KLWAGGLELVRLM---PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
+++ L G D D + +A+L + A GRQ+H I+ L
Sbjct: 198 GRVEEAIKVFNLFLREKEEGSDSD-YVFTAVLSSLAATIYVGLGRQIHCITIKN--GLLG 254
Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
V + ++L+ MY KC + +A ++F+ +G R + + W++M+ Y +NG E +
Sbjct: 255 FVALSNALVTMYSKCESLNEACKMFDSSGDR-------NSITWSAMVTGYSQNGESLEAV 307
Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SC 338
KL+ M G KP E V V++ACS ++ G + +H + L+ G E + +
Sbjct: 308 KLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQ-----LHSFLLKLGFERHLFATTA 362
Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
LVD+ +AG L A K + + +R V++W +L+S
Sbjct: 363 LVDMYAKAGCLADARKGFDCLQER-----DVALWTSLISG 397
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 190/421 (45%), Gaps = 58/421 (13%)
Query: 45 FLNPRNPLPFNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDT----YALCSSLTASTSV 99
++ RN ++ ++S + G A+K F+ F+ D+ A+ SSL A+ V
Sbjct: 178 YMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYV 237
Query: 100 KDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALL 159
G+Q+ K+G L V + +AL+ +Y+K +++A MFD +NS+ +A++
Sbjct: 238 G---LGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMV 294
Query: 160 SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
+GY + ++L M + G+ +T+ +L AC+ + E G+Q+H+++++
Sbjct: 295 TGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLK--LG 352
Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
+F ++L++MY K G + A + F+ R DV LWTS++ Y +N +
Sbjct: 353 FERHLFATTALVDMYAKAGCLADARKGFDCLQER-------DVALWTSLISGYVQNSDNE 405
Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV-HDYKLE-------- 330
E + LY M G P++ +V+ ACS ++LG + + H + LE
Sbjct: 406 EALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALS 465
Query: 331 -------------------PGPE--HYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
P + ++ ++ L G+ D+A +L EML G V
Sbjct: 466 TMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDV 525
Query: 370 SMWGALLSACHDCGKFELGKL---AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLR 426
+ ++SAC G E G + LDP V Y + +L ++ GQL+
Sbjct: 526 TFVN-IISACSHKGFVERGWFYFNMMSDQIGLDP-KVDHYACMVDLLSR------AGQLK 577
Query: 427 E 427
E
Sbjct: 578 E 578
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 173/363 (47%), Gaps = 33/363 (9%)
Query: 86 TYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD 145
T L LT + ++ G+ V + ++G + + + L++ YAK + A +F+
Sbjct: 14 TSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFN 73
Query: 146 EIPVKNSVCANALLSGYCEAKLWAGG---LELVRLMPALGLDYDHFTLSALLRACAGLSA 202
I K+ V N+L++GY + + ++L R M A + + +TL+ + +A + L +
Sbjct: 74 AIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQS 133
Query: 203 AEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
+ GRQ HA ++ K + G D+++ +SL+ MY K GLV L+VF R +
Sbjct: 134 STVGRQAHALVV-KMSSFG-DIYVDTSLVGMYCKAGLVEDGLKVFAYMPER-------NT 184
Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLM---NGTKPDEVAFVTVISACSHTGQVKLGIEY 319
W++M+ Y G +E IK++ L G+ D V F V+S+ + T V LG +
Sbjct: 185 YTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQ- 242
Query: 320 FEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGAL 375
+H ++ G + + LV + + L++A K+ + DR +S++ W A+
Sbjct: 243 ----IHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDR----NSIT-WSAM 293
Query: 376 LSACHDCGK-FELGKLAAQK-ALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKG 433
++ G+ E KL ++ + + P I +L N + C +E QL + + G
Sbjct: 294 VTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVL-NACSDICYLEEGKQLHSFLLKLG 352
Query: 434 LKK 436
++
Sbjct: 353 FER 355
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 215/394 (54%), Gaps = 13/394 (3%)
Query: 54 FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
+N +IS + N A F M G+ +D+ + + T + G+ +
Sbjct: 124 YNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCV 183
Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
K G S V V ++ I +Y K + +FDE+PVK + NA++SGY + L LE
Sbjct: 184 KGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLE 243
Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
L M + G+ D FTL ++L +CA L A + G +V + + +VF+ ++ I M
Sbjct: 244 LYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLV--ESNGFVPNVFVSNASISM 301
Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
Y +CG + KA VF++ K +V WT+M+G YG +G + + L++ M+ G
Sbjct: 302 YARCGNLAKARAVFDIMP-------VKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGI 354
Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
+PD FV V+SACSH+G G+E F M +YKLEPGPEHYSCLVDLL RAG LD+A
Sbjct: 355 RPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAM 414
Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
+ I M G ++WGALL AC ++ +LA K +E +P+N+G YV++SN+Y
Sbjct: 415 EFIESMPVEPDG----AVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIY 470
Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
+ + I ++R +M+E+ +K G S++E G
Sbjct: 471 SDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKG 504
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 146/310 (47%), Gaps = 14/310 (4%)
Query: 53 PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
P+NV + + ++ + M G D ++ L + S+ G+Q+ HV
Sbjct: 20 PWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 79
Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN--SVCANALLSGYCEAKLWAG 170
TK G + FV +ALI +Y K L+ DA +F+E P + SVC NAL+SGY
Sbjct: 80 TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTD 139
Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
+ R M G+ D T+ L+ C GR +H ++ L ++V + +S
Sbjct: 140 AAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG--GLDSEVAVLNSF 197
Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAML 289
I MY KCG V AG RL E+ K ++ W +++ Y +NG +V++LYE M
Sbjct: 198 ITMYMKCGSVE--------AGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMK 249
Query: 290 MNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGEL 349
+G PD V+V+S+C+H G K+G E + +V P + + + R G L
Sbjct: 250 SSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGK-LVESNGFVPNVFVSNASISMYARCGNL 308
Query: 350 DKAWKLINEM 359
KA + + M
Sbjct: 309 AKARAVFDIM 318
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Query: 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
+ +N VIS + +NG L+ + M G+ D + L S L++ + + G +V
Sbjct: 223 ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKL 282
Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
V +G++ +VFV +A I +YA+ + A +FD +PVK+ V A++ Y + G
Sbjct: 283 VESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIG 342
Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
L L M G+ D +L AC+ + G ++ M R+ L S L+
Sbjct: 343 LMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKRE-YKLEPGPEHYSCLV 401
Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
++ G+ G + +A++ + D +W ++LG
Sbjct: 402 DLLGRAGRLDEAMEFIE------SMPVEPDGAVWGALLG 434
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 231/397 (58%), Gaps = 13/397 (3%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
R+ + +N +I + RN AL F M G + + S L+A DA K++
Sbjct: 125 RSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL 184
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
K+ +++VG+AL+DLYAK +I DA +F+ + K+SV +++++GY + K +
Sbjct: 185 HCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNY 244
Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
L L R + L+ + FTLS+++ AC+ L+A G+Q+HA + + G++VF+ S
Sbjct: 245 EEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS--GFGSNVFVAS 302
Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
S ++MY KCG + ++ +F+ K++ LW +++ + ++ KEV+ L+E M
Sbjct: 303 SAVDMYAKCGSLRESYIIFSEVQE-------KNLELWNTIISGFAKHARPKEVMILFEKM 355
Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
+G P+EV F +++S C HTG V+ G +F+ M Y L P HYSC+VD+L RAG
Sbjct: 356 QQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGL 415
Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
L +A++LI + + S+WG+LL++C EL ++AA+K EL+P N G +V+
Sbjct: 416 LSEAYELIKSI----PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVL 471
Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
LSN+YA W+EI + R+L+++ +KK G SWI++
Sbjct: 472 LSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDI 508
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 127/255 (49%), Gaps = 19/255 (7%)
Query: 125 SALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
+ LI+ Y+K + A +FD + ++ V N ++ Y ++ + L++ M G
Sbjct: 100 NVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFK 159
Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
+ FT+S++L AC A +++H ++ C +L ++++ ++L+++Y KCG++ A+
Sbjct: 160 FSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDL--NLYVGTALLDLYAKCGMIKDAV 217
Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
QVF E +K V W+SM+ Y +N ++E + LY + ++ +VI
Sbjct: 218 QVF-------ESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVI 270
Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--SCLVDLLCRAGELDKAWKLINEMLDR 362
ACS+ + G + + K G + S VD+ + G L +++ + +E+ ++
Sbjct: 271 CACSNLAALIEGKQMHAVIC---KSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEK 327
Query: 363 GHGSSSVSMWGALLS 377
++ +W ++S
Sbjct: 328 -----NLELWNTIIS 337
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 102/202 (50%), Gaps = 1/202 (0%)
Query: 46 LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
+ ++ + ++ +++ + +N + AL + + + + L S + A +++ G
Sbjct: 223 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282
Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
KQ+ A + KSG+ S+VFV S+ +D+YAK + ++ ++F E+ KN N ++SG+ +
Sbjct: 283 KQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKH 342
Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
+ L M G+ + T S+LL C E GR+ M R L +V
Sbjct: 343 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLM-RTTYGLSPNVV 401
Query: 226 MQSSLIEMYGKCGLVTKALQVF 247
S ++++ G+ GL+++A ++
Sbjct: 402 HYSCMVDILGRAGLLSEAYELI 423
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 37/217 (17%)
Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
+L+ CA A + H +IR +L DV + + LI Y KCG V A QVF
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIR--IDLEGDVTLLNVLINAYSKCGFVELARQVF----- 119
Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS---- 308
+G + + +V W +M+G+Y RN E + ++ M G K E +V+SAC
Sbjct: 120 --DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCD 177
Query: 309 -------HTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
H VK I D L G + L+DL + G + A ++ M D
Sbjct: 178 ALECKKLHCLSVKTCI--------DLNLYVG----TALLDLYAKCGMIKDAVQVFESMQD 225
Query: 362 RGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
+ SSV+ W ++++ +E L ++A +
Sbjct: 226 K----SSVT-WSSMVAGYVQNKNYEEALLLYRRAQRM 257
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/393 (32%), Positives = 217/393 (55%), Gaps = 12/393 (3%)
Query: 54 FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
+N +I ++ P +L M + G+ D++ +CS L+A + +K R GK+V +
Sbjct: 464 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523
Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
++ +FV +++ LY + + +FD + K+ V N +++GY + L
Sbjct: 524 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 583
Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
+ R M G+ ++ + AC+ L + GR+ HAY ++ L +D F+ SLI+M
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHL--LEDDAFIACSLIDM 641
Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
Y K G +T++ +VFN G K W +M+ YG +G KE IKL+E M G
Sbjct: 642 YAKNGSITQSSKVFN-------GLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGH 694
Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
PD++ F+ V++AC+H+G + G+ Y + M + L+P +HY+C++D+L RAG+LDKA
Sbjct: 695 NPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKAL 754
Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
+++ E + + V +W +LLS+C E+G+ A K EL+P YV+LSNLY
Sbjct: 755 RVVAEEMSE---EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLY 811
Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
A W+++ ++R+ M E L+KD GCSWIE+
Sbjct: 812 AGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELN 844
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 156/331 (47%), Gaps = 27/331 (8%)
Query: 58 ISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSS-----LTASTSVKDARFGKQVQAH 111
IS+FC G + +T F+ D + L L AS KD G+++
Sbjct: 50 ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 109
Query: 112 VTKSGWLSSVFV-GSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
V+ S L + V + +I +YA D+ +FD + KN NA++S Y +L+
Sbjct: 110 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 169
Query: 171 GLE-LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSS 229
LE + ++ L DHFT +++ACAG+S G VH +++ L DVF+ ++
Sbjct: 170 VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVK--TGLVEDVFVGNA 227
Query: 230 LIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE-VIKLYEAM 288
L+ YG G VT ALQ+F++ R ++V W SM+ V+ NG+ +E + L E M
Sbjct: 228 LVSFYGTHGFVTDALQLFDIMPER-------NLVSWNSMIRVFSDNGFSEESFLLLGEMM 280
Query: 289 LMNGT---KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
NG PD VTV+ C+ ++ LG W V +L+ + L+D+ +
Sbjct: 281 EENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVK-LRLDKELVLNNALMDMYSK 339
Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
G + A +M+ + + + +V W ++
Sbjct: 340 CGCITNA-----QMIFKMNNNKNVVSWNTMV 365
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 21/297 (7%)
Query: 21 SRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTF-SFMHV 79
+R++ Y C + + + L+ +N +N VIS + RN L+TF +
Sbjct: 124 TRIITMYAMCGSPDDSRFVFDALR---SKNLFQWNAVISSYSRNELYDEVLETFIEMIST 180
Query: 80 HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
+ D + + A + D G V V K+G + VFVG+AL+ Y + D
Sbjct: 181 TDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTD 240
Query: 140 AELMFDEIPVKNSVCANALL-----SGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALL 194
A +FD +P +N V N+++ +G+ E G E++ D TL +L
Sbjct: 241 ALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLG-EMMEENGDGAFMPDVATLVTVL 299
Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
CA G+ VH + ++ L ++ + ++L++MY KCG +T A +F +
Sbjct: 300 PVCAREREIGLGKGVHGWAVK--LRLDKELVLNNALMDMYSKCGCITNAQMIFKMNN--- 354
Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKPDEVAFVTVISACSH 309
NK+VV W +M+G + G + ML G K DEV + + C H
Sbjct: 355 ----NKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 407
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 161/357 (45%), Gaps = 25/357 (7%)
Query: 37 GTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFM------HVHGIFL-DT 86
G +T+ L+ + RN + +N +I F NG ++ ++F + + G F+ D
Sbjct: 236 GFVTDALQLFDIMPERNLVSWNSMIRVFSDNG---FSEESFLLLGEMMEENGDGAFMPDV 292
Query: 87 YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
L + L ++ GK V K + + +AL+D+Y+K I +A+++F
Sbjct: 293 ATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKM 352
Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAE 204
KN V N ++ G+ G +++R M A G D D T+ + C S
Sbjct: 353 NNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLP 412
Query: 205 FGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVL 264
+++H Y +++ + + ++ + Y KCG ++ A +VF+ G +K V
Sbjct: 413 SLKELHCYSLKQ--EFVYNELVANAFVASYAKCGSLSYAQRVFH-------GIRSKTVNS 463
Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
W +++G + ++ + + + M ++G PD +++SACS ++LG E +++
Sbjct: 464 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523
Query: 325 HDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
++ LE Y ++ L GEL L + M D+ S + + G L + D
Sbjct: 524 RNW-LERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPD 579
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 6/238 (2%)
Query: 32 HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
H L T+ + ++ + +N VI+ + +NG P AL F M ++GI L ++
Sbjct: 543 HCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP 602
Query: 92 SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
A + + R G++ A+ K F+ +LID+YAK I + +F+ + K+
Sbjct: 603 VFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKS 662
Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
+ NA++ GY L ++L M G + D T +L AC G +
Sbjct: 663 TASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD 722
Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
M + L ++ + +I+M G+ G + KAL+V + E DV +W S+L
Sbjct: 723 QM-KSSFGLKPNLKHYACVIDMLGRAGQLDKALRV---VAEEMSEE--ADVGIWKSLL 774
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 234 bits (598), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 129/403 (32%), Positives = 226/403 (56%), Gaps = 16/403 (3%)
Query: 46 LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
+ R+ + + +++ F + G L A++ + M G D + L AS + D + G
Sbjct: 177 MAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMG 236
Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
+ V ++ ++G +V V ++L+D+YAK+ I A +F + K +V +L+SG+ +
Sbjct: 237 RSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQN 296
Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
L E V M +LG D TL +L AC+ + + + GR VH Y++++ D
Sbjct: 297 GLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVL---DRV 353
Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
++L++MY KCG ++ + ++F G KD+V W +M+ YG +G +EV+ L+
Sbjct: 354 TATALMDMYSKCGALSSSREIFEHVGR-------KDLVCWNTMISCYGIHGNGQEVVSLF 406
Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
M + +PD F +++SA SH+G V+ G +F M++ YK++P +HY CL+DLL R
Sbjct: 407 LKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLAR 466
Query: 346 AGELDKAWKLIN-EMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
AG +++A +IN E LD +++ +W ALLS C + +G +AA K L+L+P ++G
Sbjct: 467 AGRVEEALDMINSEKLD-----NALPIWVALLSGCINHRNLSVGDIAANKILQLNPDSIG 521
Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
I ++SN +A W E+ ++R+LM+ ++K G S IEV G
Sbjct: 522 IQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYSAIEVNG 564
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 165/372 (44%), Gaps = 24/372 (6%)
Query: 46 LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
L R +N +I + R +P L+ + M I D+ ++ A S G
Sbjct: 76 LPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKG 135
Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
+ V G+ + VFV S++++LY K + +AE++F ++ ++ +C +++G+ +A
Sbjct: 136 EAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQA 195
Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
+E R M G D + LL+A L + GR VH Y+ R L +V
Sbjct: 196 GKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYR--TGLPMNVV 253
Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
+++SL++MY K G + A +VF+ R+ + K V W S++ + +NG + +
Sbjct: 254 VETSLVDMYAKVGFIEVASRVFS----RM---MFKTAVSWGSLISGFAQNGLANKAFEAV 306
Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEP---GPEHYSCLVDL 342
M G +PD V V V+ ACS G +K G +VH Y L+ + L+D+
Sbjct: 307 VEMQSLGFQPDLVTLVGVLVACSQVGSLKTG-----RLVHCYILKRHVLDRVTATALMDM 361
Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS--ACHDCGKFELGKLAAQKALELDP 400
+ G L + ++ + G + W ++S H G+ + ++P
Sbjct: 362 YSKCGALSSSREIFEHV-----GRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEP 416
Query: 401 HNVGIYVMLSNL 412
+ +LS L
Sbjct: 417 DHATFASLLSAL 428
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 234 bits (597), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 139/404 (34%), Positives = 227/404 (56%), Gaps = 15/404 (3%)
Query: 44 KFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDA 102
K P N +N +I + G+ + A + M V G+ DT+ + A T++ D
Sbjct: 78 KIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADV 137
Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
R G+ + + V +SG+ S ++V ++L+ LYA + A +FD++P K+ V N++++G+
Sbjct: 138 RLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGF 197
Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
E L L M + G+ D FT+ +LL ACA + A G++VH YMI+ L
Sbjct: 198 AENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK--VGLTR 255
Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
++ + L+++Y +CG V +A +F+ ++K+ V WTS++ NG+ KE I
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEM-------VDKNSVSWTSLIVGLAVNGFGKEAI 308
Query: 283 KLYEAM-LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVD 341
+L++ M G P E+ FV ++ ACSH G VK G EYF M +YK+EP EH+ C+VD
Sbjct: 309 ELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVD 368
Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPH 401
LL RAG++ KA++ I M + +V +W LL AC G +L + A + L+L+P+
Sbjct: 369 LLARAGQVKKAYEYIKSMPMQ----PNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPN 424
Query: 402 NVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
+ G YV+LSN+YA W ++ ++R+ M G+KK G S +EV
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/394 (36%), Positives = 213/394 (54%), Gaps = 13/394 (3%)
Query: 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
+ +N +++ + ++ LK F+ MH G D + L + + GKQV A+
Sbjct: 483 VAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAY 542
Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
KSG+ ++V S ++D+Y K + A+ FD IPV + V ++SG E
Sbjct: 543 AIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERA 602
Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
+ M +G+ D FT++ L +A + L+A E GRQ+HA ++ C ND F+ +SL+
Sbjct: 603 FHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT--NDPFVGTSLV 660
Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
+MY KCG + A +F R+E ++ W +ML ++G KE ++L++ M
Sbjct: 661 DMYAKCGSIDDAYCLFK----RIE---MMNITAWNAMLVGLAQHGEGKETLQLFKQMKSL 713
Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
G KPD+V F+ V+SACSH+G V ++ M DY ++P EHYSCL D L RAG + +
Sbjct: 714 GIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQ 773
Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
A LI M +S SM+ LL+AC G E GK A K LEL+P + YV+LSN
Sbjct: 774 AENLIESM----SMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSN 829
Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
+YA WDE+ R +MK +KKD G SWIEV
Sbjct: 830 MYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEV 863
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 113/418 (27%), Positives = 195/418 (46%), Gaps = 32/418 (7%)
Query: 30 CRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYAL 89
C+ +K G ++ R+ + +N VI+ +NG + A+ F + G+ D Y +
Sbjct: 361 CKLRK-FGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTM 419
Query: 90 CSSLTASTSVKDA-RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP 148
S L A++S+ + KQV H K +S FV +ALID Y++ + +AE++F+
Sbjct: 420 TSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHN 479
Query: 149 VKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
+ V NA+++GY ++ L+L LM G D FTL+ + + C L A G+Q
Sbjct: 480 F-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQ 538
Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSM 268
VHAY I+ +L D+++ S +++MY KCG ++ A F+ D V WT+M
Sbjct: 539 VHAYAIKSGYDL--DLWVSSGILDMYVKCGDMSAAQFAFDSIP-------VPDDVAWTTM 589
Query: 269 LGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYK 328
+ NG + ++ M + G PDE T+ A S ++ G + +H
Sbjct: 590 ISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ-----IHANA 644
Query: 329 LE----PGPEHYSCLVDLLCRAGELDKAWKLIN--EMLDRGHGSSSVSMWGALLS--ACH 380
L+ P + LVD+ + G +D A+ L EM++ ++ W A+L A H
Sbjct: 645 LKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN-------ITAWNAMLVGLAQH 697
Query: 381 DCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
GK L K+L + P V +LS + + +R + + G+K ++
Sbjct: 698 GEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEI 755
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 27/338 (7%)
Query: 55 NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
N +S++ +G LK F+ M + D L + V G+QV K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343
Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
G + V ++LI++Y KL A +FD + ++ + N++++G + L + L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403
Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
+ GL D +T++++L+A + L +QVH + I+ N +D F+ ++LI+
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIK--INNVSDSFVSTALIDA 461
Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
Y + + +A +F N D+V W +M+ Y ++ + +KL+ M G
Sbjct: 462 YSRNRCMKEAEILFE--------RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGE 513
Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
+ D+ TV C + G + VH Y ++ G + +DL +G LD
Sbjct: 514 RSDDFTLATVFKTCGFLFAINQGKQ-----VHAYAIKSGYD-----LDLWVSSGILDMYV 563
Query: 354 KLINEMLDRGHGSSSVSM-----WGALLSACHDCGKFE 386
K +M S+ + W ++S C + G+ E
Sbjct: 564 K-CGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEE 600
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 21/232 (9%)
Query: 93 LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNS 152
L + + D GK A + F+ + LI +Y+K + A +FD++P ++
Sbjct: 46 LRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDL 105
Query: 153 VCANALLSGY-----CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
V N++L+ Y C + L R++ + TLS +L+ C
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASE 165
Query: 208 QVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLW 265
H Y C +G D F+ +L+ +Y K G V + +F +R DVVLW
Sbjct: 166 SFHGY----ACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-------DVVLW 214
Query: 266 TSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVA---FVTVISACSHTGQVK 314
ML Y G+ +E I L A +G P+E+ + S GQVK
Sbjct: 215 NLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVK 266
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 145 DEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAE 204
D V + N LS Y + ++ L+ M ++ D T +L + +
Sbjct: 273 DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLA 332
Query: 205 FGRQVHAYMIRKCCNLGNDVFM--QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDV 262
G+QVH ++ LG D+ + +SLI MY K L+ F A + +D+
Sbjct: 333 LGQQVHCMALK----LGLDLMLTVSNSLINMYCK-------LRKFGFARTVFDNMSERDL 381
Query: 263 VLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
+ W S++ +NG E + L+ +L G KPD+ +V+ A S
Sbjct: 382 ISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 102/253 (40%), Gaps = 50/253 (19%)
Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
K G FV AL+++Y K + + +++F+E+P ++ V N +L Y E ++
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232
Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
L + GL+ + TL L R G A ++ N GND SS+ E+
Sbjct: 233 LSSAFHSSGLNPNEITLRLLARIS--------GDDSDAGQVKSFAN-GNDA---SSVSEI 280
Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
+F G L Y +G + ++K + M+ +
Sbjct: 281 ------------IFRNKG-----------------LSEYLHSGQYSALLKCFADMVESDV 311
Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGEL 349
+ D+V F+ +++ + LG + VH L+ G + + L+++ C+ +
Sbjct: 312 ECDQVTFILMLATAVKVDSLALGQQ-----VHCMALKLGLDLMLTVSNSLINMYCKLRKF 366
Query: 350 DKAWKLINEMLDR 362
A + + M +R
Sbjct: 367 GFARTVFDNMSER 379
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/451 (31%), Positives = 240/451 (53%), Gaps = 28/451 (6%)
Query: 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVV 57
+H++ + GL +S L + G L +C K + R+ + +N +
Sbjct: 268 TIHSYSIKHGL--------ESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSI 319
Query: 58 ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
I + N PL A+ F M + I D L S + + + D R + VQ + GW
Sbjct: 320 IKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGW 379
Query: 118 -LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
L + +G+A++ +YAKL L+ A +F+ +P + + N ++SGY + + +E+
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYN 439
Query: 177 LMPALG-LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
+M G + + T ++L AC+ A G ++H +++ L DVF+ +SL +MYG
Sbjct: 440 IMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL--DVFVVTSLADMYG 497
Query: 236 KCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTK 294
KCG + AL +F +I + + V W +++ +G +G+ ++ + L++ ML G K
Sbjct: 498 KCGRLEDALSLFY--------QIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVK 549
Query: 295 PDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWK 354
PD + FVT++SACSH+G V G FE M DY + P +HY C+VD+ RAG+L+ A K
Sbjct: 550 PDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALK 609
Query: 355 LINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYA 414
I M S+WGALLSAC G +LGK+A++ E++P +VG +V+LSN+YA
Sbjct: 610 FIKSM----SLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYA 665
Query: 415 KFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
W+ + ++R + KGL+K G S +EV
Sbjct: 666 SAGKWEGVDEIRSIAHGKGLRKTPGWSSMEV 696
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 188/417 (45%), Gaps = 55/417 (13%)
Query: 35 NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFS-FMHVHGIFLDTYALCSSL 93
N+ + + R+ +N++IS + R G+ ++ FS FM G+ D S L
Sbjct: 101 NVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVL 160
Query: 94 TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
A +V D G ++ K G++ V+V ++LI LY++ + +A ++FDE+PV++
Sbjct: 161 KACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217
Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
NA++SGYC++ L L + A+ D T+ +LL AC G +H+Y
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYS 273
Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
I+ L +++F+ + LI++Y + G + +VF+ R D++ W S++ Y
Sbjct: 274 IKH--GLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR-------DLISWNSIIKAYE 324
Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKL--GIEYFE----WMVHD- 326
N I L++ M ++ +PD + +++ S S G ++ ++ F W + D
Sbjct: 325 LNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDI 384
Query: 327 ----------------------YKLEPGPE--HYSCLVDLLCRAGELDKAWKLINEMLDR 362
+ P + ++ ++ + G +A ++ N M +
Sbjct: 385 TIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEE 444
Query: 363 GHGSSSVSMWGALLSACHDCGKFELG-KLAAQ---KALELDPHNVGIYVMLSNLYAK 415
G +++ W ++L AC G G KL + L LD V + L+++Y K
Sbjct: 445 GEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLD---VFVVTSLADMYGK 498
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 120/267 (44%), Gaps = 34/267 (12%)
Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
K + A + S + +V + + L++LY L + A FD I ++ N ++SGY
Sbjct: 70 AKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGR 129
Query: 165 AKLWAGGLELVR----LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
A E++R M + GL D+ T ++L+AC + G ++H ++
Sbjct: 130 A---GNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALK--FGF 181
Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
DV++ +SLI +Y + V A +F+ R D+ W +M+ Y ++G KE
Sbjct: 182 MWDVYVAASLIHLYSRYKAVGNARILFDEMPVR-------DMGSWNAMISGYCQSGNAKE 234
Query: 281 VIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH---- 335
+ L NG + D V V+++SAC+ G G+ +H Y ++ G E
Sbjct: 235 ALT-----LSNGLRAMDSVTVVSLLSACTEAGDFNRGV-----TIHSYSIKHGLESELFV 284
Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDR 362
+ L+DL G L K+ + M R
Sbjct: 285 SNKLIDLYAEFGRLRDCQKVFDRMYVR 311
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 232 bits (592), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 234/450 (52%), Gaps = 32/450 (7%)
Query: 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFN----- 55
VH + ++GL+L + S L Y+ C G+L K +PF
Sbjct: 471 QVHGYTLKSGLVLDLTV--GSSLFTLYSKC------GSLEESYKLFQG---IPFKDNACW 519
Query: 56 -VVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTK 114
+IS F G A+ FS M G D L + LT +S GK++ + +
Sbjct: 520 ASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLR 579
Query: 115 SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL 174
+G + +GSAL+++Y+K + A ++D +P + V ++L+SGY + L G L
Sbjct: 580 AGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLL 639
Query: 175 VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMY 234
R M G D F +S++L+A A + G QVHAY+ + L + + SSL+ MY
Sbjct: 640 FRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITK--IGLCTEPSVGSSLLTMY 697
Query: 235 GKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
K G + + F+ +IN D++ WT+++ Y ++G E +++Y M G
Sbjct: 698 SKFGSIDDCCKAFS--------QINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGF 749
Query: 294 KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAW 353
KPD+V FV V+SACSH G V+ + MV DY +EP HY C+VD L R+G L +A
Sbjct: 750 KPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAE 809
Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLY 413
IN M H +WG LL+AC G+ ELGK+AA+KA+EL+P + G Y+ LSN+
Sbjct: 810 SFINNM----HIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNIL 865
Query: 414 AKFCMWDEIGQLRELMKEKGLKKDVGCSWI 443
A+ WDE+ + R+LMK G++K+ G S +
Sbjct: 866 AEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 171/350 (48%), Gaps = 22/350 (6%)
Query: 22 RLMLPYTTCRHKK------NLGTLTNCLKFLN--PR-NPLPFNVVISDFCRNGSPLYALK 72
R +LP+ K N G++ + K + P+ + + N++IS + ++ +L+
Sbjct: 77 RYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLR 136
Query: 73 TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
FS MH G + + S ++A ++++ F + V H K G+ V SALID+++
Sbjct: 137 FFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFS 196
Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
K L DA +F + N C N +++G + + +L M D +T S+
Sbjct: 197 KNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSS 256
Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
+L ACA L FG+ V A +I KC DVF+ ++++++Y KCG + +A++VF+
Sbjct: 257 VLAACASLEKLRFGKVVQARVI-KCG--AEDVFVCTAIVDLYAKCGHMAEAMEVFS---- 309
Query: 253 RLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQ 312
R+ N VV WT ML Y ++ +++++ M +G + + +VISAC
Sbjct: 310 RIP---NPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSM 366
Query: 313 VKLGIEYFEWMVHD-YKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLD 361
V + W+ + L+ + L+ + ++G++D + ++ ++ D
Sbjct: 367 VCEASQVHAWVFKSGFYLDSSVA--AALISMYSKSGDIDLSEQVFEDLDD 414
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 160/336 (47%), Gaps = 30/336 (8%)
Query: 54 FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
+N +I+ RN + F M V D+Y S L A S++ RFGK VQA V
Sbjct: 219 WNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVI 278
Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
K G VFV +A++DLYAK + +A +F IP + V +LSGY ++ LE
Sbjct: 279 KCG-AEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALE 337
Query: 174 LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEM 233
+ + M G++ ++ T+++++ AC S QVHA++ + L + V ++LI M
Sbjct: 338 IFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSV--AAALISM 395
Query: 234 YGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGT 293
Y K G + + QVF L+ +++V M+ + ++ + I+L+ ML G
Sbjct: 396 YSKSGDIDLSEQVF----EDLDDIQRQNIV--NVMITSFSQSKKPGKAIRLFTRMLQEGL 449
Query: 294 KPDEVAFVTVISA--CSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLLCRAG 347
+ DE + +++S C + G+ VH Y L+ G S L L + G
Sbjct: 450 RTDEFSVCSLLSVLDCLNLGK----------QVHGYTLKSGLVLDLTVGSSLFTLYSKCG 499
Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCG 383
L++++KL +G + W +++S ++ G
Sbjct: 500 SLEESYKLF-----QGIPFKDNACWASMISGFNEYG 530
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 132/281 (46%), Gaps = 27/281 (9%)
Query: 103 RFGKQVQAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSG 161
R K +QAH+ + L VF+ +L+ Y+ + DA +FD IP + V N ++SG
Sbjct: 65 RTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISG 124
Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLG 221
Y + +L+ L M LG + + + +++ AC+ L A F V + I+ +G
Sbjct: 125 YKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIK----MG 180
Query: 222 NDVF--MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
+ ++S+LI+++ K A +VF ++ +V W +++ RN +
Sbjct: 181 YFFYEVVESALIDVFSKNLRFEDAYKVF-------RDSLSANVYCWNTIIAGALRNQNYG 233
Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY--- 336
V L+ M + KPD + +V++AC+ +++ G +V ++ G E
Sbjct: 234 AVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFG-----KVVQARVIKCGAEDVFVC 288
Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
+ +VDL + G + +A ++ + + + SV W +LS
Sbjct: 289 TAIVDLYAKCGHMAEAMEVFSRIPN-----PSVVSWTVMLS 324
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 216/403 (53%), Gaps = 32/403 (7%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGI----FLDTYALCSSLTASTSVKDAR 103
++ +N +I+ + R G A + F S M + + + Y C L ++
Sbjct: 153 KDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKAS------ 206
Query: 104 FGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV-KNSVCANALLSGY 162
H K + V +A+I Y K + AE MF ++ V KN V NA++SGY
Sbjct: 207 -------HFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGY 259
Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
E GL+L R M G+ + LS+ L C+ LSA + GRQ+H + + L N
Sbjct: 260 VENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSK--STLCN 317
Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
DV +SLI MY KCG + A ++F + KDVV W +M+ Y ++G + +
Sbjct: 318 DVTALTSLISMYCKCGELGDAWKLFEVMK-------KKDVVAWNAMISGYAQHGNADKAL 370
Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
L+ M+ N +PD + FV V+ AC+H G V +G+ YFE MV DYK+EP P+HY+C+VDL
Sbjct: 371 CLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDL 430
Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
L RAG+L++A KLI M R H +++G LL AC EL + AA+K L+L+ N
Sbjct: 431 LGRAGKLEEALKLIRSMPFRPHA----AVFGTLLGACRVHKNVELAEFAAEKLLQLNSQN 486
Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
YV L+N+YA W+++ ++R+ MKE + K G SWIE+
Sbjct: 487 AAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEI 529
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 138/327 (42%), Gaps = 31/327 (9%)
Query: 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
P N +I+ R+G AL+ F HG+ +SL S +R ++AH
Sbjct: 62 FPLNKIIARCVRSGDIDGALRVF-----HGMRAKNTITWNSLLIGISKDPSRM---MEAH 113
Query: 112 -VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
+ F + ++ Y + + A+ FD +P K++ N +++GY G
Sbjct: 114 QLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYAR----RG 169
Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
+E R + ++ + + +A++ + + + H + + V +++
Sbjct: 170 EMEKARELFYSMMEKNEVSWNAMI--SGYIECGDLEKASHFFKVAPV----RGVVAWTAM 223
Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
I Y K V A +F + +NK++V W +M+ Y N ++ +KL+ AML
Sbjct: 224 ITGYMKAKKVELAEAMFK------DMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLE 277
Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
G +P+ + + CS ++LG + + +V L + L+ + C+ GEL
Sbjct: 278 EGIRPNSSGLSSALLGCSELSALQLGRQIHQ-IVSKSTLCNDVTALTSLISMYCKCGELG 336
Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLS 377
AWKL M + V W A++S
Sbjct: 337 DAWKLFEVMKKK-----DVVAWNAMIS 358
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/403 (32%), Positives = 222/403 (55%), Gaps = 18/403 (4%)
Query: 46 LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMH-VHGIFLDTYALCSSLTASTSVKDARF 104
+ ++ + +++ + + P AL +S M V + + + ++ A+ +VK R
Sbjct: 177 MTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRR 236
Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
GK++ H+ ++G S + S+L+D+Y K I +A +FD+I K+ V +++ Y +
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296
Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND- 223
+ W G L + + +T + +L ACA L+ E G+QVH YM R +G D
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTR----VGFDP 352
Query: 224 -VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
F SSL++MY KCG + A H ++G D+V WTS++G +NG E +
Sbjct: 353 YSFASSSLVDMYTKCGNIESA-------KHVVDGCPKPDLVSWTSLIGGCAQNGQPDEAL 405
Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
K ++ +L +GTKPD V FV V+SAC+H G V+ G+E+F + ++L +HY+CLVDL
Sbjct: 406 KYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDL 465
Query: 343 LCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHN 402
L R+G ++ +I+EM + S +W ++L C G +L + AAQ+ +++P N
Sbjct: 466 LARSGRFEQLKSVISEMPMK----PSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPEN 521
Query: 403 VGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
YV ++N+YA W+E G++R+ M+E G+ K G SW E+
Sbjct: 522 PVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEI 564
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 152/331 (45%), Gaps = 55/331 (16%)
Query: 90 CSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV 149
C+ + + + GK+V H+ SG++ + + + L+ +YAK + DA +FDE+P
Sbjct: 89 CNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPN 148
Query: 150 KNSVCANALLSGYCEAKL------------------WAG-------------GLELVRLM 178
++ N +++GY E L W L L LM
Sbjct: 149 RDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLM 208
Query: 179 PALGLDYDH-FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
+ + FT+S + A A + G+++H +++R L +D + SSL++MYGKC
Sbjct: 209 QRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVR--AGLDSDEVLWSSLMDMYGKC 266
Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
G + +A +F+ + KDVV WTSM+ Y ++ ++E L+ ++ + +P+E
Sbjct: 267 GCIDEARNIFDKI-------VEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNE 319
Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAW 353
F V++AC+ +LG + VH Y G + Y S LVD+ + G ++ A
Sbjct: 320 YTFAGVLNACADLTTEELGKQ-----VHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAK 374
Query: 354 KLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
+++ G + W +L+ C G+
Sbjct: 375 HVVD-----GCPKPDLVSWTSLIGGCAQNGQ 400
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 228 bits (582), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 237/448 (52%), Gaps = 20/448 (4%)
Query: 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
+VHA F+ + I +S L+ Y+ C + + K + ++ + + +IS
Sbjct: 394 SVHAELFKRPIQSTSTI--ESALLTLYSKCGCDPDAYLV---FKSMEEKDMVAWGSLISG 448
Query: 61 FCRNGSPLYALKTFSFMHVHGIFL--DTYALCSSLTASTSVKDARFGKQVQAHVTKSGWL 118
C+NG ALK F M L D+ + S A ++ RFG QV + K+G +
Sbjct: 449 LCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLV 508
Query: 119 SSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 178
+VFVGS+LIDLY+K L A +F + +N V N+++S Y L ++L LM
Sbjct: 509 LNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLM 568
Query: 179 PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG 238
+ G+ D +++++L A + ++ G+ +H Y +R + +D ++++LI+MY KCG
Sbjct: 569 LSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR--LGIPSDTHLKNALIDMYVKCG 626
Query: 239 LVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEV 298
A +F H K ++ W M+ YG +G + L++ M G PD+V
Sbjct: 627 FSKYAENIFKKMQH-------KSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDV 679
Query: 299 AFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
F+++ISAC+H+G V+ G FE+M DY +EP EHY+ +VDLL RAG L++A+ I
Sbjct: 680 TFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKA 739
Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
M S+W LLSA ELG L+A+K L ++P YV L NLY + +
Sbjct: 740 MPIEADS----SIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGL 795
Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIEVT 446
+E +L LMKEKGL K GCSWIEV+
Sbjct: 796 KNEAAKLLGLMKEKGLHKQPGCSWIEVS 823
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 161/337 (47%), Gaps = 25/337 (7%)
Query: 47 NPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
+ N + +NV+I F +G +L + + + L + + +L A + +++ FG+
Sbjct: 233 DKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGR 292
Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
Q+ V K G + +V ++L+ +Y+K ++ +AE +F + K NA+++ Y E
Sbjct: 293 QIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAEND 352
Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
L+L M + D FTLS ++ C+ L +G+ VHA + ++ + +
Sbjct: 353 YGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTI-- 410
Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
+S+L+ +Y KCG A VF +E KD+V W S++ +NG FKE +K++
Sbjct: 411 ESALLTLYSKCGCDPDAYLVFK----SME---EKDMVAWGSLISGLCKNGKFKEALKVFG 463
Query: 287 AMLMNGT--KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLV 340
M + KPD +V +AC+ ++ G++ VH ++ G S L+
Sbjct: 464 DMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQ-----VHGSMIKTGLVLNVFVGSSLI 518
Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS 377
DL + G + A K+ M + ++ W +++S
Sbjct: 519 DLYSKCGLPEMALKVFTSM-----STENMVAWNSMIS 550
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 153/339 (45%), Gaps = 24/339 (7%)
Query: 50 NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIF-LDTYALCSSLTASTSVKDARFGKQV 108
+P N I + G L AL +S F + S L A +++ + +GK +
Sbjct: 23 SPASINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTI 82
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFD-------EIPVKNSVCANALLSG 161
V GW F+ ++L+++Y K + A +FD + ++ N+++ G
Sbjct: 83 HGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDG 142
Query: 162 YCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC--AGLSAAEFGRQVHAYMIRKCCN 219
Y + + + G+ R M G+ D F+LS ++ G E G+Q+H +M+R +
Sbjct: 143 YFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRN--S 200
Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
L D F++++LI+MY K GL A +VF +E E +VVLW M+ +G +G +
Sbjct: 201 LDTDSFLKTALIDMYFKFGLSIDAWRVF------VEIEDKSNVVLWNVMIVGFGGSGICE 254
Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
+ LY N K +F + ACS + G + V L P + L
Sbjct: 255 SSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQ-IHCDVVKMGLHNDPYVCTSL 313
Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
+ + + G + +A + + ++D+ + +W A+++A
Sbjct: 314 LSMYSKCGMVGEAETVFSCVVDK-----RLEIWNAMVAA 347
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 158/382 (41%), Gaps = 49/382 (12%)
Query: 6 QFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNG 65
Q ++G+ + ++ S + + R K+ +G L F + ++V+S C+ G
Sbjct: 123 QSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEG 182
Query: 66 SPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGS 125
+F GKQ+ + ++ + F+ +
Sbjct: 183 ---------NFRREE------------------------GKQIHGFMLRNSLDTDSFLKT 209
Query: 126 ALIDLYAKLLLIHDAELMFDEIPVK-NSVCANALLSGYCEAKLWAGGLELVRLMPALGLD 184
ALID+Y K L DA +F EI K N V N ++ G+ + + L+L L +
Sbjct: 210 ALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVK 269
Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
+ + L AC+ + FGRQ+H +++ L ND ++ +SL+ MY KCG+V +A
Sbjct: 270 LVSTSFTGALGACSQSENSGFGRQIHCDVVK--MGLHNDPYVCTSLLSMYSKCGMVGEAE 327
Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
VF+ ++K + +W +M+ Y N Y + L+ M PD VI
Sbjct: 328 TVFSCV-------VDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVI 380
Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
S CS G G + + ++ S L+ L + G A+ + M ++
Sbjct: 381 SCCSVLGLYNYG-KSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEK-- 437
Query: 365 GSSSVSMWGALLSACHDCGKFE 386
+ WG+L+S GKF+
Sbjct: 438 ---DMVAWGSLISGLCKNGKFK 456
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 219/400 (54%), Gaps = 17/400 (4%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQ 107
RN +N IS+ +G P A++ F F + G ++ C+ L A + G Q
Sbjct: 172 RNLETWNAFISNSVTDGRPREAIEAFIEFRRIDG-HPNSITFCAFLNACSDWLHLNLGMQ 230
Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
+ V +SG+ + V V + LID Y K I +E++F E+ KN+V +L++ Y +
Sbjct: 231 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 290
Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
L ++ F +S++L ACAG++ E GR +HA+ ++ C + +F+
Sbjct: 291 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC--VERTIFVG 348
Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
S+L++MYGKCG + + Q F+ K++V S++G Y G + L+E
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPE-------KNLVTRNSLIGGYAHQGQVDMALALFEE 401
Query: 288 MLMNG--TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
M G P+ + FV+++SACS G V+ G++ F+ M Y +EPG EHYSC+VD+L R
Sbjct: 402 MAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGR 461
Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
AG +++A++ I +M + ++S+WGAL +AC GK +LG LAA+ +LDP + G
Sbjct: 462 AGMVERAYEFIKKMPIQ----PTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGN 517
Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
+V+LSN +A W E +RE +K G+KK G SWI V
Sbjct: 518 HVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITV 557
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 149/377 (39%), Gaps = 40/377 (10%)
Query: 43 LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
L+ RN + + +IS +NG AL F M G+ + + + A S++
Sbjct: 65 LRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLP 124
Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
GKQ+ A K G + VFVG + D+Y K L DA +FDEIP +N NA +S
Sbjct: 125 VTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNS 184
Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
+E + + T A L AC+ G Q+H ++R
Sbjct: 185 VTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRS--GFDT 242
Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
DV + + LI+ YGKC + + +F G K+ V W S++ Y +N ++
Sbjct: 243 DVSVCNGLIDFYGKCKQIRSSEIIFTEMG-------TKNAVSWCSLVAAYVQNHEDEKAS 295
Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH----------------- 325
LY + + + +V+SAC+ ++LG V
Sbjct: 296 VLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMY 355
Query: 326 ---------DYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSM- 371
+ + PE + L+ G++D A L EM RG G + M
Sbjct: 356 GKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMT 415
Query: 372 WGALLSACHDCGKFELG 388
+ +LLSAC G E G
Sbjct: 416 FVSLLSACSRAGAVENG 432
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 10/227 (4%)
Query: 93 LTASTSVKDARFGKQVQAHVTKS-GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
L + S R G+ V A + K+ F+ + LI++Y+KL A L+ P +N
Sbjct: 13 LKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARN 72
Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
V +L+SG + ++ L M G+ + FT +A A L G+Q+HA
Sbjct: 73 VVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHA 132
Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGV 271
++ C DVF+ S +MY K L A ++F+ R ++ W + +
Sbjct: 133 LAVK--CGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPER-------NLETWNAFISN 183
Query: 272 YGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
+G +E I+ + P+ + F ++ACS + LG++
Sbjct: 184 SVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 230
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 219/397 (55%), Gaps = 18/397 (4%)
Query: 50 NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
N + + +IS F +N A+ FS M G+ + + LTA + + +V
Sbjct: 361 NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPS----EVH 416
Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWA 169
A V K+ + S VG+AL+D Y KL + +A +F I K+ V +A+L+GY +
Sbjct: 417 AQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETE 476
Query: 170 GGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQS 228
+++ + G+ + FT S++L CA +A+ G+Q H + I+ L + + + S
Sbjct: 477 AAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK--SRLDSSLCVSS 534
Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
+L+ MY K G + A +VF + + KD+V W SM+ Y ++G + + +++ M
Sbjct: 535 ALLTMYAKKGNIESAEEVF-------KRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM 587
Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
K D V F+ V +AC+H G V+ G +YF+ MV D K+ P EH SC+VDL RAG+
Sbjct: 588 KKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQ 647
Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
L+KA K+I M + + ++W +L+AC K ELG+LAA+K + + P + YV+
Sbjct: 648 LEKAMKVIENMPN----PAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVL 703
Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
LSN+YA+ W E ++R+LM E+ +KK+ G SWIEV
Sbjct: 704 LSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEV 740
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 123/255 (48%), Gaps = 9/255 (3%)
Query: 61 FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
F R+G A + F +H G+ +D S L S ++ D FG+Q+ K G+L
Sbjct: 68 FSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDD 127
Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
V VG++L+D Y K D +FDE+ +N V L+SGY + L L M
Sbjct: 128 VSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQN 187
Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
G + FT +A L A G QVH +++ L + + +SLI +Y KCG V
Sbjct: 188 EGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN--GLDKTIPVSNSLINLYLKCGNV 245
Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
KA +F+ + E+ K VV W SM+ Y NG E + ++ +M +N + E +F
Sbjct: 246 RKARILFD------KTEV-KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSF 298
Query: 301 VTVISACSHTGQVKL 315
+VI C++ +++
Sbjct: 299 ASVIKLCANLKELRF 313
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 167/351 (47%), Gaps = 26/351 (7%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
++ + +N +IS + NG L AL F M ++ + L + S + ++K+ RF +Q+
Sbjct: 258 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQL 317
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIP-VKNSVCANALLSGYCEAKL 167
V K G+L + +AL+ Y+K + DA +F EI V N V A++SG+ +
Sbjct: 318 HCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDG 377
Query: 168 WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
++L M G+ + FT S +L A +S +E VHA +++ N +
Sbjct: 378 KEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VHAQVVK--TNYERSSTVG 431
Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
++L++ Y K G V +A +VF+ G +KD+V W++ML Y + G + IK++
Sbjct: 432 TALLDAYVKLGKVEEAAKVFS-------GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGE 484
Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
+ G KP+E F ++++ C+ T + F +L+ S L+ + + G
Sbjct: 485 LTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKG 544
Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
++ A E+ R VS W +++S G+ A KAL++
Sbjct: 545 NIESA----EEVFKRQREKDLVS-WNSMISGYAQHGQ-------AMKALDV 583
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 19/243 (7%)
Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
+++A +FD+ P ++ +LL G+ L + LG++ D S++L+
Sbjct: 43 LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102
Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLG--NDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
A L FGRQ+H +C G +DV + +SL++ Y K +VF+ R
Sbjct: 103 SATLCDELFGRQLHC----QCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER- 157
Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
+VV WT+++ Y RN EV+ L+ M GT+P+ F + + G
Sbjct: 158 ------NVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGG 211
Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
G++ +V + + P S L++L + G + KA L ++ + SV W +
Sbjct: 212 RGLQVHTVVVKNGLDKTIPVSNS-LINLYLKCGNVRKARILFDKTEVK-----SVVTWNS 265
Query: 375 LLS 377
++S
Sbjct: 266 MIS 268
>sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protein At1g77170
OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1
Length = 467
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/398 (32%), Positives = 212/398 (53%), Gaps = 13/398 (3%)
Query: 51 PLPF--NVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
P+ F N ++ + R+ SPL A++ + M + D Y+L + A+ + D GK++
Sbjct: 80 PIAFLWNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKEL 139
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
+ + G++ F S I LY K +A +FDE P + NA++ G A
Sbjct: 140 HSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRA 199
Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
+E+ M GL+ D FT+ ++ +C GL Q+H +++ +D+ M +
Sbjct: 200 NEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLN 259
Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
SLI+MYGKCG + +LA H E ++VV W+SM+ Y NG E ++ + M
Sbjct: 260 SLIDMYGKCGRM-------DLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQM 312
Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
G +P+++ FV V+SAC H G V+ G YF M +++LEPG HY C+VDLL R G+
Sbjct: 313 REFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQ 372
Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
L +A K++ EM + +V +WG L+ C G E+ + A +EL+P N G+YV+
Sbjct: 373 LKEAKKVVEEMPMK----PNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVV 428
Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
L+N+YA MW ++ ++R+LMK K + K S+ T
Sbjct: 429 LANVYALRGMWKDVERVRKLMKTKKVAKIPAYSYASTT 466
>sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540
OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
Length = 609
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/393 (33%), Positives = 215/393 (54%), Gaps = 19/393 (4%)
Query: 54 FNVVISDFCRNGSPLYALKTFSFMHV-HGIFLDTYALCSSLTASTSVKDARFGKQVQAHV 112
+ V+S F +N AL F MH G+ D + LTA +++ + GK++ +
Sbjct: 232 WTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKL 291
Query: 113 TKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGL 172
+G S+V V S+L+D+Y K + +A +F+ + KNSV +ALL GYC+ +
Sbjct: 292 ITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAI 351
Query: 173 ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
E+ R M + D + +L+ACAGL+A G+++H +R+ C GN V ++S+LI+
Sbjct: 352 EIFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGC-FGN-VIVESALID 405
Query: 233 MYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG 292
+YGK G + A +V++ R +++ W +ML +NG +E + + M+ G
Sbjct: 406 LYGKSGCIDSASRVYSKMSIR-------NMITWNAMLSALAQNGRGEEAVSFFNDMVKKG 458
Query: 293 TKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
KPD ++F+ +++AC HTG V G YF M Y ++PG EHYSC++DLL RAG ++A
Sbjct: 459 IKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEA 518
Query: 353 WKLINEMLDRGHGSSSVSMWGALLSAC-HDCGKFELGKLAAQKALELDPHNVGIYVMLSN 411
L L+R + S+WG LL C + + + A++ +EL+P YV+LSN
Sbjct: 519 ENL----LERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSN 574
Query: 412 LYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
+Y + +R+LM +G+ K VG SWI+
Sbjct: 575 MYKAIGRHGDALNIRKLMVRRGVAKTVGQSWID 607
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 170/343 (49%), Gaps = 28/343 (8%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
++ + + ++S + + AL+ F M G+ + + L S++ A + + + R G+
Sbjct: 126 KDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCF 185
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
V G+ + F+ S L LY DA +FDE+P + +C A+LS + + L+
Sbjct: 186 HGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLY 245
Query: 169 AGGLELVRLM-PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
L L M GL D T +L AC L + G+++H +I +G++V ++
Sbjct: 246 EEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITN--GIGSNVVVE 303
Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
SSL++MYGKCG V +A QVFN G K+ V W+++LG Y +NG ++ I+++
Sbjct: 304 SSLLDMYGKCGSVREARQVFN-------GMSKKNSVSWSALLGGYCQNGEHEKAIEIFRE 356
Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPG----PEHYSCLVDLL 343
M + D F TV+ AC+ V+LG E +H + G S L+DL
Sbjct: 357 M----EEKDLYCFGTVLKACAGLAAVRLGKE-----IHGQYVRRGCFGNVIVESALIDLY 407
Query: 344 CRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
++G +D A ++ ++M R ++ W A+LSA G+ E
Sbjct: 408 GKSGCIDSASRVYSKMSIR-----NMITWNAMLSALAQNGRGE 445
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 154/331 (46%), Gaps = 17/331 (5%)
Query: 58 ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
I + C+ G A++ + H I S L V G Q AHV KSG
Sbjct: 33 ILELCKLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGL 92
Query: 118 LSSVFVGSALIDLYAKLLL-IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
+ VG++L+ LY KL + + +FD VK+++ +++SGY K LE+
Sbjct: 93 ETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFV 152
Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
M + GLD + FTLS+ ++AC+ L GR H +I + F+ S+L +YG
Sbjct: 153 EMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNH--FISSTLAYLYGV 210
Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM-NGTKP 295
A +VF+ DV+ WT++L + +N ++E + L+ AM G P
Sbjct: 211 NREPVDARRVFDEMPE-------PDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVP 263
Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
D F TV++AC + ++K G E ++ + + S L+D+ + G + +A ++
Sbjct: 264 DGSTFGTVLTACGNLRRLKQGKEIHGKLITN-GIGSNVVVESSLLDMYGKCGSVREARQV 322
Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
N M + +SVS W ALL G+ E
Sbjct: 323 FNGMSKK----NSVS-WSALLGGYCQNGEHE 348
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 14/254 (5%)
Query: 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
++ +S L+ Y C + + N + + +N + ++ ++ +C+NG A++ F
Sbjct: 300 VVVESSLLDMYGKCGSVREARQVFNGM---SKKNSVSWSALLGGYCQNGEHEKAIEIFRE 356
Query: 77 MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
M D Y + L A + R GK++ + G +V V SALIDLY K
Sbjct: 357 MEEK----DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGC 412
Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
I A ++ ++ ++N + NA+LS + + M G+ D+ + A+L A
Sbjct: 413 IDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTA 472
Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
C + GR M K + S +I++ G+ GL +A + A
Sbjct: 473 CGHTGMVDEGRNYFVLMA-KSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERA------ 525
Query: 257 EINKDVVLWTSMLG 270
E D LW +LG
Sbjct: 526 ECRNDASLWGVLLG 539
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 17/178 (9%)
Query: 46 LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
++ RN + +N ++S +NG A+ F+ M GI D + + LTA G
Sbjct: 423 MSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEG 482
Query: 106 KQVQAHVTKS-GWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
+ + KS G S +IDL + L +AE + + +N +L G C
Sbjct: 483 RNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVLLGPCA 542
Query: 165 AKLWAGGL------ELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRK 216
A A + ++ L P + Y LS + +A GR A IRK
Sbjct: 543 ANADASRVAERIAKRMMELEPKYHMSY--VLLSNMYKA--------IGRHGDALNIRK 590
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 226 bits (576), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 216/400 (54%), Gaps = 15/400 (3%)
Query: 51 PLP----FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
PLP FN VI + PL+ + + M + Y S + + + R GK
Sbjct: 68 PLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGK 127
Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
V H SG+ +V +AL+ Y+K + A +FD +P K+ V N+L+SG+ +
Sbjct: 128 GVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNG 187
Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
L +++ M G + D T +LL ACA A G VH Y+I + +L +V +
Sbjct: 188 LADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDL--NVKL 245
Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
++LI +Y +CG V KA +VF+ +V WT+M+ YG +GY ++ ++L+
Sbjct: 246 GTALINLYSRCGDVGKAREVFDKMK-------ETNVAAWTAMISAYGTHGYGQQAVELFN 298
Query: 287 AMLMN-GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCR 345
M + G P+ V FV V+SAC+H G V+ G ++ M Y+L PG EH+ C+VD+L R
Sbjct: 299 KMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGR 358
Query: 346 AGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGI 405
AG LD+A+K I++ LD +++ ++W A+L AC ++LG A++ + L+P N G
Sbjct: 359 AGFLDEAYKFIHQ-LDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGH 417
Query: 406 YVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
+VMLSN+YA DE+ +R+ M L+K VG S IEV
Sbjct: 418 HVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEV 457
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 161/315 (51%), Gaps = 32/315 (10%)
Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
+QV AH+ +G+ S + + LI L I L+F +P+ + N+++ +
Sbjct: 26 QQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKL 85
Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
+L + R M + + ++T ++++++CA LSA G+ VH + + G D +
Sbjct: 86 RLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAV--VSGFGLDTY 143
Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
+Q++L+ Y KCG + A QVF+ R+ K +V W S++ + +NG E I+++
Sbjct: 144 VQAALVTFYSKCGDMEGARQVFD----RMP---EKSIVAWNSLVSGFEQNGLADEAIQVF 196
Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVD 341
M +G +PD FV+++SAC+ TG V LG W VH Y + G + + L++
Sbjct: 197 YQMRESGFEPDSATFVSLLSACAQTGAVSLG----SW-VHQYIISEGLDLNVKLGTALIN 251
Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ--KALELD 399
L R G++ KA ++ ++M + ++V+ W A++SA G G+ A + +E D
Sbjct: 252 LYSRCGDVGKAREVFDKMKE-----TNVAAWTAMISA---YGTHGYGQQAVELFNKMEDD 303
Query: 400 ----PHNVGIYVMLS 410
P+NV +LS
Sbjct: 304 CGPIPNNVTFVAVLS 318
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 237/446 (53%), Gaps = 20/446 (4%)
Query: 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
VHAH +T L + ++RL++ Y C L L + +N + + +IS
Sbjct: 73 RVHAHMIKTRYLPATYL--RTRLLIFYGKC---DCLEDARKVLDEMPEKNVVSWTAMISR 127
Query: 61 FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
+ + G AL F+ M + + + LT+ GKQ+ + K + S
Sbjct: 128 YSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSH 187
Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
+FVGS+L+D+YAK I +A +F+ +P ++ V A+++GY + L LE+ + +
Sbjct: 188 IFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHS 247
Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
G+ ++ T ++LL A +GL+ + G+Q H +++R+ L +Q+SLI+MY KCG +
Sbjct: 248 EGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRR--ELPFYAVLQNSLIDMYSKCGNL 305
Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVA 299
+ A ++F+ R + W +ML Y ++G +EV++L+ M KPD V
Sbjct: 306 SYARRLFDNMPER-------TAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVT 358
Query: 300 FVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSCLVDLLCRAGELDKAWKLINE 358
+ V+S CSH G+ F+ MV +Y +PG EHY C+VD+L RAG +D+A++ I
Sbjct: 359 LLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKR 418
Query: 359 MLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCM 418
M + + + G+LL AC ++G+ ++ +E++P N G YV+LSNLYA
Sbjct: 419 MPSK----PTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGR 474
Query: 419 WDEIGQLRELMKEKGLKKDVGCSWIE 444
W ++ +R +M +K + K+ G SWI+
Sbjct: 475 WADVNNVRAMMMQKAVTKEPGRSWIQ 500
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 154/323 (47%), Gaps = 26/323 (8%)
Query: 58 ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
IS C NG AL + + F AL ++ +++D G++V AH+ K+ +
Sbjct: 27 ISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRD---GQRVHAHMIKTRY 83
Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
L + ++ + L+ Y K + DA + DE+P KN V A++S Y + + L +
Sbjct: 84 LPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAE 143
Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
M + FT + +L +C S G+Q+H +++ N + +F+ SSL++MY K
Sbjct: 144 MMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVK--WNYDSHIFVGSSLLDMYAKA 201
Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
G + +A ++F R DVV T+++ Y + G +E ++++ + G P+
Sbjct: 202 GQIKEAREIFECLPER-------DVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNY 254
Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAW 353
V + ++++A S + G + H + L Y+ L+D+ + G L A
Sbjct: 255 VTYASLLTALSGLALLDHGKQ-----AHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAR 309
Query: 354 KLINEMLDRGHGSSSVSMWGALL 376
+L + M +R +++S W A+L
Sbjct: 310 RLFDNMPER----TAIS-WNAML 327
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 223/445 (50%), Gaps = 45/445 (10%)
Query: 35 NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
+L + + ++ + +N +I+ F + GSP AL+ F M + + L+
Sbjct: 181 DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 240
Query: 95 ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
A +++ FG+QV +++ ++ ++ + +A++D+Y K I DA+ +FD + K++V
Sbjct: 241 ACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 300
Query: 155 ANALLSGYCEAKLWAGGLELVRLMPAL--------------------------------G 182
+L GY ++ + E++ MP
Sbjct: 301 WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKN 360
Query: 183 LDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTK 242
+ + TL + L ACA + A E GR +H+Y+ + + + + S+LI MY KCG + K
Sbjct: 361 MKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM--NFHVTSALIHMYSKCGDLEK 418
Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
+ +VFN R DV +W++M+G +G E + ++ M KP+ V F
Sbjct: 419 SREVFNSVEKR-------DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTN 471
Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDR 362
V ACSHTG V F M +Y + P +HY+C+VD+L R+G L+KA K I M
Sbjct: 472 VFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPI- 530
Query: 363 GHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEI 422
S S+WGALL AC L ++A + LEL+P N G +V+LSN+YAK W+ +
Sbjct: 531 ---PPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENV 587
Query: 423 GQLRELMKEKGLKKDVGCSWIEVTG 447
+LR+ M+ GLKK+ GCS IE+ G
Sbjct: 588 SELRKHMRVTGLKKEPGCSSIEIDG 612
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 172/386 (44%), Gaps = 44/386 (11%)
Query: 50 NPLPFNVVISDFCRNGSPLYALKTF-SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
N +N +I + P+ ++ F + + + Y + A+ V G+ +
Sbjct: 94 NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
KS S VFV ++LI Y + A +F I K+ V N++++G+ +
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213
Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
LEL + M + + H T+ +L ACA + EFGRQV +Y+ N+ ++ + +
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNV--NLTLAN 271
Query: 229 SLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEI-----------NKDVVL 264
++++MY KCG + A ++F+ L G+ + + KD+V
Sbjct: 272 AMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVA 331
Query: 265 WTSMLGVYGRNGYFKE-VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM 323
W +++ Y +NG E +I +E L K +++ V+ +SAC+ G ++LG W
Sbjct: 332 WNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG----RW- 386
Query: 324 VHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLS-- 377
+H Y + G S L+ + + G+L+K+ ++ N + R V +W A++
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKR-----DVFVWSAMIGGL 441
Query: 378 ACHDCGKFELGKLAAQKALELDPHNV 403
A H CG + + + P+ V
Sbjct: 442 AMHGCGNEAVDMFYKMQEANVKPNGV 467
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 21/295 (7%)
Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYA--KLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
KQ H+ ++G S + S L + A + A +FDEIP NS N L+ Y
Sbjct: 47 KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYA 106
Query: 164 EA-----KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCC 218
+WA + ++ + +T L++A A +S+ G+ +H ++
Sbjct: 107 SGPDPVLSIWA----FLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA- 161
Query: 219 NLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYF 278
+G+DVF+ +SLI Y CG + A +VF KDVV W SM+ + + G
Sbjct: 162 -VGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE-------KDVVSWNSMINGFVQKGSP 213
Query: 279 KEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC 338
+ ++L++ M K V V V+SAC+ ++ G + + + + ++ +
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY-IEENRVNVNLTLANA 272
Query: 339 LVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
++D+ + G ++ A +L + M ++ + + + + G +S ++ + L + +
Sbjct: 273 MLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQK 327
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 145/427 (33%), Positives = 223/427 (52%), Gaps = 49/427 (11%)
Query: 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
+ +N +IS + G AL+ M GI LD + S + A + + GKQV A+
Sbjct: 252 VAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAY 311
Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC------EA 165
V + S F S L+ LY K +A +F+++P K+ V NALLSGY EA
Sbjct: 312 VLRREDFSFHFDNS-LVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEA 370
Query: 166 KL------------W-------------AGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
KL W GL+L M G + + S +++CA L
Sbjct: 371 KLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVL 430
Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQS--SLIEMYGKCGLVTKALQVFNLAGHRLEGEI 258
A G+Q HA +++ +G D + + +LI MY KCG+V +A QVF
Sbjct: 431 GAYCNGQQYHAQLLK----IGFDSSLSAGNALITMYAKCGVVEEARQVFRTMP------- 479
Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
D V W +++ G++G+ E + +YE ML G +PD + +TV++ACSH G V G +
Sbjct: 480 CLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRK 539
Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
YF+ M Y++ PG +HY+ L+DLLCR+G+ A +I + + + +W ALLS
Sbjct: 540 YFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFK----PTAEIWEALLSG 595
Query: 379 CHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDV 438
C G ELG +AA K L P + G Y++LSN++A W+E+ ++R+LM+++G+KK+V
Sbjct: 596 CRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEV 655
Query: 439 GCSWIEV 445
CSWIE+
Sbjct: 656 ACSWIEM 662
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 167/396 (42%), Gaps = 80/396 (20%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSV-KDARFGKQ 107
R+ + +N +I+ F N A+ F M G D + S L V D + Q
Sbjct: 111 RDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQ 170
Query: 108 VQAHVTKSGWLSSVFVGSALIDLYAKLL----LIHDAELMFDEIPVKNS----------- 152
A KSG V +AL+ +Y+K L+H A +FDEI K+
Sbjct: 171 FHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYV 230
Query: 153 ---------------------VCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLS 191
V NA++SGY + LE+VR M + G++ D FT
Sbjct: 231 KNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYP 290
Query: 192 ALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN--- 248
+++RACA + G+QVHAY++R+ +SL+ +Y KCG +A +F
Sbjct: 291 SVIRACATAGLLQLGKQVHAYVLRR---EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMP 347
Query: 249 ----------LAGHRLEGEI-----------NKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
L+G+ G I K+++ W M+ NG+ +E +KL+
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407
Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH---DYKLEPGPEHYSCLVDLLC 344
M G +P + AF I +C+ G G +Y ++ D L G + L+ +
Sbjct: 408 MKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAG----NALITMYA 463
Query: 345 RAGELDKAWKLINEM--LDRGHGSSSVSMWGALLSA 378
+ G +++A ++ M LD SVS W AL++A
Sbjct: 464 KCGVVEEARQVFRTMPCLD------SVS-WNALIAA 492
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 137/349 (39%), Gaps = 50/349 (14%)
Query: 35 NLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLT 94
++G K + +N L + ++IS NG LK FS M G YA ++
Sbjct: 366 HIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIK 425
Query: 95 ASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVC 154
+ + G+Q A + K G+ SS+ G+ALI +YAK ++ +A +F +P +SV
Sbjct: 426 SCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVS 485
Query: 155 ANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
NAL++ + A +++ M G+ D TL +L AC+ + GR+ M
Sbjct: 486 WNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSM- 544
Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGR 274
++ A H + ++ + R
Sbjct: 545 --------------------------ETVYRIPPGADH------------YARLIDLLCR 566
Query: 275 NGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE 334
+G F + + E++ KP + ++S C G ++LGI + D PE
Sbjct: 567 SGKFSDAESVIESLPF---KPTAEIWEALLSGCRVHGNMELGI-----IAADKLFGLIPE 618
Query: 335 H---YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
H Y L ++ G+ ++ ++ M DRG W + + H
Sbjct: 619 HDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVH 667
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/399 (22%), Positives = 166/399 (41%), Gaps = 81/399 (20%)
Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEI--------------- 147
+ + V ++ G+ + + LID+Y K ++ A +FDEI
Sbjct: 31 QLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGY 90
Query: 148 ----------------PV--KNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
PV +++V NA+++G+ + L M G D+FT
Sbjct: 91 CASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFT 150
Query: 190 LSALLRACAGLSAAEFG-RQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCG----LVTKAL 244
+++L A ++ E Q HA ++ G + ++L+ +Y KC L+ A
Sbjct: 151 FASVLAGLALVADDEKQCVQFHAAALKS--GAGYITSVSNALVSVYSKCASSPSLLHSAR 208
Query: 245 QV------------------------FNLAGHRLEG-EINKDVVLWTSMLGVYGRNGYFK 279
+V F+L LEG + N +V + +M+ Y G+++
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268
Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL--EPGPEHY- 336
E +++ M+ +G + DE + +VI AC+ G ++LG + VH Y L E H+
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQ-----VHAYVLRREDFSFHFD 323
Query: 337 SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKAL 396
+ LV L + G+ D+A + +M + + W ALLS G KL +
Sbjct: 324 NSLVSLYYKCGKFDEARAIFEKM-----PAKDLVSWNALLSGYVSSGHIGEAKLIFK--- 375
Query: 397 ELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLK 435
E+ N+ ++++ + A+ +E +L MK +G +
Sbjct: 376 EMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFE 414
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 213/404 (52%), Gaps = 23/404 (5%)
Query: 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
+ ++ IS + + G AL M GI + L S L+ SV GK++ +
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390
Query: 112 -------VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVK--NSVCANALLSGY 162
+ K+G V + LID+YAK + A MFD + K + V ++ GY
Sbjct: 391 AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450
Query: 163 CEAKLWAGGLELVRLM--PALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNL 220
+ LEL+ M + FT+S L ACA L+A G+Q+HAY +R N
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQN- 509
Query: 221 GNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKE 280
+F+ + LI+MY KCG ++ A VF + + K+ V WTS++ YG +GY +E
Sbjct: 510 AVPLFVSNCLIDMYAKCGSISDARLVF-------DNMMAKNEVTWTSLMTGYGMHGYGEE 562
Query: 281 VIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLV 340
+ +++ M G K D V + V+ ACSH+G + G+EYF M + + PGPEHY+CLV
Sbjct: 563 ALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLV 622
Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP 400
DLL RAG L+ A +LI EM +W A LS C GK ELG+ AA+K EL
Sbjct: 623 DLLGRAGRLNAALRLIEEM----PMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELAS 678
Query: 401 HNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
++ G Y +LSNLYA W ++ ++R LM+ KG+KK GCSW+E
Sbjct: 679 NHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 171/380 (45%), Gaps = 47/380 (12%)
Query: 54 FNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVT 113
+N +I + NG L F MH D Y A + R G+ A
Sbjct: 95 WNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSL 154
Query: 114 KSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLE 173
+G++S+VFVG+AL+ +Y++ + DA +FDE+ V + V N+++ Y + LE
Sbjct: 155 VTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALE 214
Query: 174 LV-RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIE 232
+ R+ G D+ TL +L CA L G+Q+H + + + ++F+ + L++
Sbjct: 215 MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTS--EMIQNMFVGNCLVD 272
Query: 233 MYGKCGLVTKALQVFN-------------LAGH----------RL-----EGEINKDVVL 264
MY KCG++ +A VF+ +AG+ RL E +I DVV
Sbjct: 273 MYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT 332
Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY----F 320
W++ + Y + G E + + ML +G KP+EV ++V+S C+ G + G E
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392
Query: 321 EWMVHDYKLEPGPEH--YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
++ + K G E+ + L+D+ + ++D A + + + + V W ++
Sbjct: 393 KYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPK---ERDVVTWTVMIGG 449
Query: 379 CHDCGKFELGKLAAQKALEL 398
G A KALEL
Sbjct: 450 YSQHGD-------ANKALEL 462
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 218/397 (54%), Gaps = 13/397 (3%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
++ + + +I+ + + AL TF M GI D L ++++A ++ + G+Q+
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
A SG+ S + +AL+ LY++ I ++ L F++ +++ NAL+SG+ ++
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673
Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
L + M G+D ++FT + ++A + + + G+QVHA + + + +V +
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVC--N 731
Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
+LI MY KCG ++ A + F LE K+ V W +++ Y ++G+ E + ++ M
Sbjct: 732 ALISMYAKCGSISDAEKQF------LEVS-TKNEVSWNAIINAYSKHGFGSEALDSFDQM 784
Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
+ + +P+ V V V+SACSH G V GI YFE M +Y L P PEHY C+VD+L RAG
Sbjct: 785 IHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGL 844
Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVM 408
L +A + I EM + +W LLSAC E+G+ AA LEL+P + YV+
Sbjct: 845 LSRAKEFIQEMPIK----PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVL 900
Query: 409 LSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
LSNLYA WD R+ MKEKG+KK+ G SWIEV
Sbjct: 901 LSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV 937
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 160/325 (49%), Gaps = 21/325 (6%)
Query: 57 VISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSG 116
+IS +N A++ F M+V GI YA S L+A ++ G+Q+ V K G
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318
Query: 117 WLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR 176
+ S +V +AL+ LY L + AE +F + +++V N L++G + +EL +
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378
Query: 177 LMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGK 236
M GL+ D TL++L+ AC+ G+Q+HAY + N + + +L+ +Y K
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKI--EGALLNLYAK 436
Query: 237 CGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPD 296
C + AL F LE E+ ++VVLW ML YG + +++ M + P+
Sbjct: 437 CADIETALDYF------LETEV-ENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489
Query: 297 EVAFVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSC--LVDLLCRAGELDKAW 353
+ + +++ C G ++LG + ++ +++L Y C L+D+ + G+LD AW
Sbjct: 490 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVLIDMYAKLGKLDTAW 545
Query: 354 KLINEMLDRGHGSSSVSMWGALLSA 378
++L R G VS W +++
Sbjct: 546 ----DILIRFAGKDVVS-WTTMIAG 565
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 164/360 (45%), Gaps = 25/360 (6%)
Query: 32 HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
H NL + + ++ R+ + +N +I+ + G A++ F MH+ G+ D+ L S
Sbjct: 335 HLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS 394
Query: 92 SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
+ A ++ G+Q+ A+ TK G+ S+ + AL++LYAK I A F E V+N
Sbjct: 395 LVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVEN 454
Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHA 211
V N +L Y + R M + + +T ++L+ C L E G Q+H+
Sbjct: 455 VVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHS 514
Query: 212 YMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF-NLAGHRLEGEINKDVVLWTSMLG 270
+I+ N + ++ S LI+MY K G + A + AG KDVV WT+M+
Sbjct: 515 QIIK--TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG--------KDVVSWTTMIA 564
Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
Y + + + + + ML G + DEV +SAC+ +K G + +H
Sbjct: 565 GYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-----IHAQACV 619
Query: 331 PGPEH----YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE 386
G + LV L R G++++++ L E + G + W AL+S G E
Sbjct: 620 SGFSSDLPFQNALVTLYSRCGKIEESY-LAFEQTEAGDNIA----WNALVSGFQQSGNNE 674
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 105/211 (49%), Gaps = 9/211 (4%)
Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
+Q+ A + G S V + LIDLY++ + A +FD + +K+ A++SG +
Sbjct: 207 EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKN 266
Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
+ A + L M LG+ + S++L AC + + E G Q+H +++ +D +
Sbjct: 267 ECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK--LGFSSDTY 324
Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLY 285
+ ++L+ +Y G + A +F+ R D V + +++ + GY ++ ++L+
Sbjct: 325 VCNALVSLYFHLGNLISAEHIFSNMSQR-------DAVTYNTLINGLSQCGYGEKAMELF 377
Query: 286 EAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
+ M ++G +PD +++ ACS G + G
Sbjct: 378 KRMHLDGLEPDSNTLASLVVACSADGTLFRG 408
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 27/297 (9%)
Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
G+++ + + K G S+ + L D Y ++ A +FDE+P + N ++
Sbjct: 104 GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 163
Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGND 223
L L M + + + T S +L AC G S A + Q+HA ++ + L +
Sbjct: 164 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQ--GLRDS 221
Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
+ + LI++Y + G V A +VF+ G RL KD W +M+ +N E I+
Sbjct: 222 TVVCNPLIDLYSRNGFVDLARRVFD--GLRL-----KDHSSWVAMISGLSKNECEAEAIR 274
Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC--LVD 341
L+ M + G P AF +V+SAC +++G E +V KL + Y C LV
Sbjct: 275 LFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG-EQLHGLV--LKLGFSSDTYVCNALVS 331
Query: 342 LLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL 398
L G L A + + M R + L++ CG +KA+EL
Sbjct: 332 LYFHLGNLISAEHIFSNMSQR-----DAVTYNTLINGLSQCG-------YGEKAMEL 376
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 23/202 (11%)
Query: 182 GLDYDHFTLSALLRACAGLSAA-EFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
G+ +H TL LL C + + + GR++H+ +++ L ++ + L + Y G +
Sbjct: 79 GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK--LGLDSNGCLSEKLFDFYLFKGDL 136
Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
A +VF+ R + W M+ EV L+ M+ P+E F
Sbjct: 137 YGAFKVFDEMPERT-------IFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 189
Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSC----LVDLLCRAGELDKAWKLI 356
V+ AC G V + +H L G + L+DL R G +D A ++
Sbjct: 190 SGVLEAC-RGGSVAFDVVE---QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVF 245
Query: 357 NEMLDRGHGSSSVSMWGALLSA 378
+ + + H S W A++S
Sbjct: 246 DGLRLKDHSS-----WVAMISG 262
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 225 bits (574), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/429 (32%), Positives = 240/429 (55%), Gaps = 26/429 (6%)
Query: 23 LMLPYTTCRHKKNLGTLTNCLKF--LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVH 80
+M Y TC ++ CL F + +N + + +I+ F G + LK + M +
Sbjct: 152 MMNMYATC----SVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLE 207
Query: 81 GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDA 140
+ Y + ++ AS S+ GKQ+ A V K G+ S++ V ++++DLY + + +A
Sbjct: 208 NAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEA 267
Query: 141 ELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGL 200
+ F E+ K+ + N L+S E + L + + + G + +T ++L+ ACA +
Sbjct: 268 KHYFHEMEDKDLITWNTLISE-LERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANI 326
Query: 201 SAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-- 258
+A G+Q+H + R+ N +V + ++LI+MY KCG + + +VF GEI
Sbjct: 327 AALNCGQQLHGRIFRRGFN--KNVELANALIDMYAKCGNIPDSQRVF--------GEIVD 376
Query: 259 NKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIE 318
+++V WTSM+ YG +GY E ++L++ M+ +G +PD + F+ V+SAC H G V+ G++
Sbjct: 377 RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLK 436
Query: 319 YFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
YF M +Y + P + Y+C+VDLL RAG++ +A++L+ M + S+ WGA+L A
Sbjct: 437 YFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDEST----WGAILGA 492
Query: 379 C--HDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKK 436
C H + +LAA+K +EL P VG YVMLS +YA W + ++R++M+ G KK
Sbjct: 493 CKAHKHNGL-ISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKK 551
Query: 437 DVGCSWIEV 445
+ G SWI V
Sbjct: 552 EAGMSWILV 560
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 119/261 (45%), Gaps = 24/261 (9%)
Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
+ + LI Y + L+ +A +FDE+P ++ V A+++GY + A E M
Sbjct: 46 ILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105
Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
G + FTLS++L++C + +G VH +++ + +++ ++++ MY C +
Sbjct: 106 GTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVK--LGMEGSLYVDNAMMNMYATCSVTM 163
Query: 242 KAL-QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
+A +F + ++ DV WT+++ + G +K+Y+ ML+ +
Sbjct: 164 EAACLIFR------DIKVKNDVT-WTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCI 216
Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH----YSCLVDLLCRAGELDKAWKLI 356
+ A + V G + +H ++ G + + ++DL CR G L +A
Sbjct: 217 TIAVRASASIDSVTTGKQ-----IHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYF 271
Query: 357 NEMLDRGHGSSSVSMWGALLS 377
+EM D+ + W L+S
Sbjct: 272 HEMEDK-----DLITWNTLIS 287
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/405 (33%), Positives = 223/405 (55%), Gaps = 28/405 (6%)
Query: 54 FNVVISDFCRNGSPLYALKTFSFMHVH-GIFLDTYALCSSLTASTSVKDARFGKQVQAH- 111
+N +I+ + +N AL F M G+ ++ + + A V+ F ++ H
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC--VRSGAFSRKEAIHG 429
Query: 112 -VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
V K G FV + L+D+Y++L I A +F ++ ++ V N +++GY ++
Sbjct: 430 FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 489
Query: 171 GLELVRLMPAL-----------GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCN 219
L L+ M L L + TL +L +CA LSA G+++HAY I+ N
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--N 547
Query: 220 LGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFK 279
L DV + S+L++MY KCG + + +VF+ K+V+ W ++ YG +G +
Sbjct: 548 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQ-------KNVITWNVIIMAYGMHGNGQ 600
Query: 280 EVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCL 339
E I L M++ G KP+EV F++V +ACSH+G V G+ F M DY +EP +HY+C+
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660
Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELD 399
VDLL RAG + +A++L+N M+ R + W +LL A E+G++AAQ ++L+
Sbjct: 661 VDLLGRAGRIKEAYQLMN-MMPRDFNKAGA--WSSLLGASRIHNNLEIGEIAAQNLIQLE 717
Query: 400 PHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIE 444
P+ YV+L+N+Y+ +WD+ ++R MKE+G++K+ GCSWIE
Sbjct: 718 PNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 155/313 (49%), Gaps = 21/313 (6%)
Query: 70 ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW-LSSVFVGSALI 128
A+ T+ M V GI D YA + L A ++D GKQ+ AHV K G+ + SV V + L+
Sbjct: 81 AVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLV 140
Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
+LY K +FD I +N V N+L+S C + W LE R M ++ F
Sbjct: 141 NLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSF 200
Query: 189 TLSALLRACAGLSAAE---FGRQVHAYMIRKCCNLGN-DVFMQSSLIEMYGKCGLVTKAL 244
TL +++ AC+ L E G+QVHAY +RK G + F+ ++L+ MYGK G + +
Sbjct: 201 TLVSVVTACSNLPMPEGLMMGKQVHAYGLRK----GELNSFIINTLVAMYGKLGKLASSK 256
Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
+ G R D+V W ++L +N E ++ M++ G +PDE +V+
Sbjct: 257 VLLGSFGGR-------DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 309
Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
ACSH ++ G E + + + L+ S LVD+ C ++ ++ + M DR
Sbjct: 310 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR-- 367
Query: 365 GSSSVSMWGALLS 377
+ +W A+++
Sbjct: 368 ---KIGLWNAMIA 377
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 169/343 (49%), Gaps = 28/343 (8%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
R+ + +N V+S C+N L AL+ M + G+ D + + S L A + ++ R GK++
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
Query: 109 QAHVTKSGWLS-SVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL 167
A+ K+G L + FVGSAL+D+Y + +FD + + NA+++GY + +
Sbjct: 325 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 384
Query: 168 WAGGLEL-VRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
L L + + + GL + T++ ++ AC A +H +++++ L D F+
Sbjct: 385 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKR--GLDRDRFV 442
Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
Q++L++MY + G + A+++F ++E ++D+V W +M+ Y + + ++ + L
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFG----KME---DRDLVTWNTMITGYVFSEHHEDALLLLH 495
Query: 287 AM------LMNGT-----KPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH 335
M + G KP+ + +T++ +C+ + G E + + + L
Sbjct: 496 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAV 554
Query: 336 YSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSA 378
S LVD+ + G L + K+ +++ + +V W ++ A
Sbjct: 555 GSALVDMYAKCGCLQMSRKVFDQIPQK-----NVITWNVIIMA 592
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 265 WTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMV 324
W +L R+ +E + Y M++ G KPD AF ++ A + ++LG +
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIH---A 121
Query: 325 HDYKLEPGPEHYS---CLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHD 381
H YK G + + LV+L + G+ +K+ + + +R S W +L+S+
Sbjct: 122 HVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS-----WNSLISSLCS 176
Query: 382 CGKFELG 388
K+E+
Sbjct: 177 FEKWEMA 183
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 213/396 (53%), Gaps = 17/396 (4%)
Query: 54 FNVVISDFCRNGSPLY---ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQA 110
FN +I + R G+ AL F M I S L AS S+ KQ+
Sbjct: 419 FNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHG 478
Query: 111 HVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAG 170
+ K G +F GSALID+Y+ + D+ L+FDE+ VK+ V N++ +GY +
Sbjct: 479 LMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEE 538
Query: 171 GLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSL 230
L L + D FT + ++ A L++ + G++ H ++++ L + ++ ++L
Sbjct: 539 ALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR--GLECNPYITNAL 596
Query: 231 IEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM 290
++MY KCG A + F+ A R DVV W S++ Y +G K+ +++ E M+
Sbjct: 597 LDMYAKCGSPEDAHKAFDSAASR-------DVVCWNSVISSYANHGEGKKALQMLEKMMS 649
Query: 291 NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELD 350
G +P+ + FV V+SACSH G V+ G++ FE M+ + +EP EHY C+V LL RAG L+
Sbjct: 650 EGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLN 708
Query: 351 KAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
KA +LI +M + + +W +LLS C G EL + AA+ A+ DP + G + MLS
Sbjct: 709 KARELIEKMPTK----PAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLS 764
Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVT 446
N+YA MW E ++RE MK +G+ K+ G SWI +
Sbjct: 765 NIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGIN 800
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 134/266 (50%), Gaps = 12/266 (4%)
Query: 46 LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
L ++ + + +IS + G +L+ F + + D Y L + L+A + + G
Sbjct: 209 LPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGG 268
Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
KQ+ AH+ + G + + LID Y K + A +F+ +P KN + LLSGY +
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQN 328
Query: 166 KLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVF 225
L +EL M GL D + S++L +CA L A FG QVHAY I+ NLGND +
Sbjct: 329 ALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIK--ANLGNDSY 386
Query: 226 MQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGY---FKEVI 282
+ +SLI+MY KC +T A +VF++ DVVL+ +M+ Y R G E +
Sbjct: 387 VTNSLIDMYAKCDCLTDARKVFDIFAA-------ADVVLFNAMIEGYSRLGTQWELHEAL 439
Query: 283 KLYEAMLMNGTKPDEVAFVTVISACS 308
++ M +P + FV+++ A +
Sbjct: 440 NIFRDMRFRLIRPSLLTFVSLLRASA 465
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 165/342 (48%), Gaps = 54/342 (15%)
Query: 55 NVVISDFCRNGSPLYALKTFSFM---------------HVHGIFLDTYA----------- 88
N++I+ + R G +YA K F M + HGI+ ++
Sbjct: 83 NILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKD 142
Query: 89 -----LCSSLTASTSVKDARFGK----QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHD 139
+ SS + S D R G+ Q+Q+ + KSG+ V+VG+ LID Y K I
Sbjct: 143 SPNEYILSSFIQACSGLDGR-GRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDY 201
Query: 140 AELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAG 199
A L+FD +P K++V ++SG + L+L + + D + LS +L AC+
Sbjct: 202 ARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSI 261
Query: 200 LSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN 259
L E G+Q+HA+++R L D + + LI+ Y KCG V A ++FN G N
Sbjct: 262 LPFLEGGKQIHAHILRY--GLEMDASLMNVLIDSYVKCGRVIAAHKLFN-------GMPN 312
Query: 260 KDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEY 319
K+++ WT++L Y +N KE ++L+ +M G KPD A +++++C+ + G +
Sbjct: 313 KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQ- 371
Query: 320 FEWMVHDYKLEP--GPEHY--SCLVDLLCRAGELDKAWKLIN 357
VH Y ++ G + Y + L+D+ + L A K+ +
Sbjct: 372 ----VHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFD 409
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 121/262 (46%), Gaps = 22/262 (8%)
Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLEL-VRLMP 179
++ + LI+LY++ + A +F+++P +N V + ++S ++ L + +
Sbjct: 79 TYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWR 138
Query: 180 ALGLDYDHFTLSALLRACAGLSAAEFGR----QVHAYMIRKCCNLGNDVFMQSSLIEMYG 235
+ + LS+ ++AC+GL GR Q+ +++++ DV++ + LI+ Y
Sbjct: 139 TRKDSPNEYILSSFIQACSGLDGR--GRWMVFQLQSFLVKS--GFDRDVYVGTLLIDFYL 194
Query: 236 KCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP 295
K G + A VF+ K V WT+M+ + G ++L+ ++ + P
Sbjct: 195 KDGNIDYARLVFDALPE-------KSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVP 247
Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
D TV+SACS ++ G + ++ Y LE + L+D + G + A KL
Sbjct: 248 DGYILSTVLSACSILPFLEGGKQIHAHILR-YGLEMDASLMNVLIDSYVKCGRVIAAHKL 306
Query: 356 INEMLDRGHGSSSVSMWGALLS 377
N M ++ ++ W LLS
Sbjct: 307 FNGMPNK-----NIISWTTLLS 323
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/401 (34%), Positives = 217/401 (54%), Gaps = 17/401 (4%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGI--FLDTYALCSSLTASTSVKDARFGK 106
R+ + +N +I+ F G AL TF M I D + L S L A +S GK
Sbjct: 171 RSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGK 230
Query: 107 QVQAHVTKSGW--LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
Q+ + +SG+ SS + +L+DLY K + A FD+I K + ++L+ GY +
Sbjct: 231 QIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQ 290
Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
+ + L + + L D F LS+++ A + G+Q+ A ++ L V
Sbjct: 291 EGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSV 350
Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKL 284
+S+++MY KCGLV +A + F A +L KDV+ WT ++ YG++G K+ +++
Sbjct: 351 L--NSVVDMYLKCGLVDEAEKCF--AEMQL-----KDVISWTVVITGYGKHGLGKKSVRI 401
Query: 285 YEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLC 344
+ ML + +PDEV ++ V+SACSH+G +K G E F ++ + ++P EHY+C+VDLL
Sbjct: 402 FYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLG 461
Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
RAG L +A LI+ M + +V +W LLS C G ELGK + L +D N
Sbjct: 462 RAGRLKEAKHLIDTMPIK----PNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPA 517
Query: 405 IYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
YVM+SNLY + W+E G REL KGLKK+ G SW+E+
Sbjct: 518 NYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEI 558
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 173/359 (48%), Gaps = 22/359 (6%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
RN + ++ ++S NG +L FS M GI+ + + ++L A + G Q+
Sbjct: 70 RNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQI 129
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
K G+ V VG++L+D+Y+K I++AE +F I ++ + NA+++G+ A
Sbjct: 130 HGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYG 189
Query: 169 AGGLELVRLMPALGLDY--DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
+ L+ +M + D FTL++LL+AC+ G+Q+H +++R + + +
Sbjct: 190 SKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATI 249
Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
SL+++Y KCG + A + F+ K ++ W+S++ Y + G F E + L++
Sbjct: 250 TGSLVDLYVKCGYLFSARKAFDQIKE-------KTMISWSSLILGYAQEGEFVEAMGLFK 302
Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEH--YSCLVDLLC 344
+ ++ D A ++I + ++ G + V KL G E + +VD+
Sbjct: 303 RLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAV---KLPSGLETSVLNSVVDMYL 359
Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNV 403
+ G +D+A K EM + V W +++ GK LGK + + E+ HN+
Sbjct: 360 KCGLVDEAEKCFAEMQLK-----DVISWTVVITG---YGKHGLGKKSVRIFYEMLRHNI 410
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 21/286 (7%)
Query: 105 GKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
G QV ++ KSG ++ + LID+Y K A +FD +P +N V +AL+SG+
Sbjct: 25 GGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVL 84
Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
G L L M G+ + FT S L+AC L+A E G Q+H + C +G ++
Sbjct: 85 NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGF----CLKIGFEM 140
Query: 225 FMQ--SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
++ +SL++MY KCG + +A +VF +++ ++ W +M+ + GY + +
Sbjct: 141 MVEVGNSLVDMYSKCGRINEAEKVFRRI-------VDRSLISWNAMIAGFVHAGYGSKAL 193
Query: 283 KLYEAMLMNGTK--PDEVAFVTVISACSHTGQVKLGIEYFEWMVHD-YKLEPGPEHYSCL 339
+ M K PDE +++ ACS TG + G + ++V + L
Sbjct: 194 DTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSL 253
Query: 340 VDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKF 385
VDL + G L A K +++ ++ ++ W +L+ G+F
Sbjct: 254 VDLYVKCGYLFSARKAFDQIKEK-----TMISWSSLILGYAQEGEF 294
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 23/194 (11%)
Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
L ++LR C ++ G QVH Y+++ L ++ + LI+MY KC A +VF+
Sbjct: 8 NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGL--NLITSNYLIDMYCKCREPLMAYKVFD 65
Query: 249 LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACS 308
R +VV W++++ + NG K + L+ M G P+E F T + AC
Sbjct: 66 SMPER-------NVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACG 118
Query: 309 HTGQVKLGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGH 364
++ G++ +H + L+ G E + LVD+ + G +++A K+ ++DR
Sbjct: 119 LLNALEKGLQ-----IHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDR-- 171
Query: 365 GSSSVSMWGALLSA 378
S+ W A+++
Sbjct: 172 ---SLISWNAMIAG 182
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 135/305 (44%), Gaps = 50/305 (16%)
Query: 46 LNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFG 105
+ + + ++ +I + + G + A+ F + +D++AL S + R G
Sbjct: 273 IKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQG 332
Query: 106 KQVQAHVTK--SGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYC 163
KQ+QA K SG +SV ++++D+Y K L+ +AE F E+ +K+ + +++GY
Sbjct: 333 KQMQALAVKLPSGLETSVL--NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 390
Query: 164 EAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGND 223
+ L + + M ++ D A+L AC+ H+ MI++ G +
Sbjct: 391 KHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACS-----------HSGMIKE----GEE 435
Query: 224 VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIK 283
+F S L+E +G I V + ++ + GR G KE
Sbjct: 436 LF--SKLLETHG----------------------IKPRVEHYACVVDLLGRAGRLKEAKH 471
Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH-DYKLEPGPEHYSCLVDL 342
L + M + KP+ + T++S C G ++LG E + ++ D K P +Y + +L
Sbjct: 472 LIDTMPI---KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAK---NPANYVMMSNL 525
Query: 343 LCRAG 347
+AG
Sbjct: 526 YGQAG 530
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 148/478 (30%), Positives = 234/478 (48%), Gaps = 50/478 (10%)
Query: 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
+HA +TGL I + SR++ C ++ +N +NP +N +I
Sbjct: 43 QIHASLIKTGL--ISDTVTASRVLA--FCCASPSDMNYAYLVFTRINHKNPFVWNTIIRG 98
Query: 61 FCRNGSPLYALKTFSFMHVHGIFLDTYALC--SSLTASTSVKDARFGKQVQAHVTKSGWL 118
F R+ P A+ F M + L S A + AR G+Q+ V K G
Sbjct: 99 FSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLE 158
Query: 119 SSVFVGSALIDLY-------------------------------AKLLLIHDAELMFDEI 147
F+ + ++ +Y AK LI A+ +FDE+
Sbjct: 159 DDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEM 218
Query: 148 PVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGR 207
P +N V N+++SG+ + L++ R M + D FT+ +LL ACA L A+E GR
Sbjct: 219 PQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGR 278
Query: 208 QVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTS 267
+H Y++R L + V ++LI+MY KCG + + L VF A K + W S
Sbjct: 279 WIHEYIVRNRFELNSIVV--TALIDMYCKCGCIEEGLNVFECAP-------KKQLSCWNS 329
Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
M+ NG+ + + L+ + +G +PD V+F+ V++AC+H+G+V E+F M Y
Sbjct: 330 MILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKY 389
Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFEL 387
+EP +HY+ +V++L AG L++A LI M +W +LLSAC G E+
Sbjct: 390 MIEPSIKHYTLMVNVLGGAGLLEEAEALIKNM----PVEEDTVIWSSLLSACRKIGNVEM 445
Query: 388 GKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
K AA+ +LDP YV+LSN YA + +++E + R LMKE+ ++K+VGCS IEV
Sbjct: 446 AKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEV 503
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 125/290 (43%), Gaps = 44/290 (15%)
Query: 97 TSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY-AKLLLIHDAELMFDEIPVKNSVCA 155
T R KQ+ A + K+G +S S ++ A ++ A L+F I KN
Sbjct: 33 TQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVW 92
Query: 156 NALLSGYCEAKLWAGGLELV--RLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
N ++ G+ + + + L + + T ++ +A L A GRQ+H +
Sbjct: 93 NTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMV 152
Query: 214 IRKCCNLGNDVFMQSSLIEMY-------------------------------GKCGLVTK 242
I++ L +D F++++++ MY KCGL+ +
Sbjct: 153 IKE--GLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQ 210
Query: 243 ALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVT 302
A +F+ R + V W SM+ + RNG FK+ + ++ M KPD V+
Sbjct: 211 AQNLFDEMPQR-------NGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVS 263
Query: 303 VISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKA 352
+++AC++ G + G E++V + + E + L+D+ C+ G +++
Sbjct: 264 LLNACAYLGASEQGRWIHEYIVRN-RFELNSIVVTALIDMYCKCGCIEEG 312
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 217/415 (52%), Gaps = 17/415 (4%)
Query: 35 NLGTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
LGT+ + K + RN + + V++ + + + F M G+ LD L
Sbjct: 156 QLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLIC 215
Query: 92 SLTASTSVKDARFGKQVQAHVTKSGWL-SSVFVGSALIDLYAKLLLIHDAELMFDEIPVK 150
+ A +V + GK V + ++ S ++ +++ID+Y K L+ +A +F+ +
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275
Query: 151 NSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVH 210
N V L+SG+ + + +L R M + + TL+A+L +C+ L + G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335
Query: 211 AYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLG 270
YMIR + D +S I+MY +CG + A VF++ R +V+ W+SM+
Sbjct: 336 GYMIRNGIEM--DAVNFTSFIDMYARCGNIQMARTVFDMMPER-------NVISWSSMIN 386
Query: 271 VYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLE 330
+G NG F+E + + M P+ V FV+++SACSH+G VK G + FE M DY +
Sbjct: 387 AFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVV 446
Query: 331 PGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKL 390
P EHY+C+VDLL RAGE+ +A I+ M + S+ WGALLSAC + +L
Sbjct: 447 PEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASA----WGALLSACRIHKEVDLAGE 502
Query: 391 AAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
A+K L ++P +YV+LSN+YA MW+ + +R M KG +K VG S EV
Sbjct: 503 IAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYRKHVGQSATEV 557
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 180/366 (49%), Gaps = 18/366 (4%)
Query: 49 RNPLPFNVVISDFCRNGSPLYA--LKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
RN +N ++S + ++ + Y+ L ++ M H +D++ L ++ A + G
Sbjct: 70 RNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGI 129
Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
+ K+G +V +L+++YA+L + A+ +FDEIPV+NSV L+ GY +
Sbjct: 130 LIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYS 189
Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
L LM GL D TL L++AC + A + G+ VH IR+ +D ++
Sbjct: 190 KDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSD-YL 248
Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
Q+S+I+MY KC L+ A ++F E ++++VV+WT+++ + + E L+
Sbjct: 249 QASIIDMYVKCRLLDNARKLF-------ETSVDRNVVMWTTLISGFAKCERAVEAFDLFR 301
Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRA 346
ML P++ ++ +CS G ++ G +M+ + +E +++ +D+ R
Sbjct: 302 QMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRN-GIEMDAVNFTSFIDMYARC 360
Query: 347 GELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFE--LGKLAAQKALELDPHNVG 404
G + A + + M +R +V W ++++A G FE L K+ + P++V
Sbjct: 361 GNIQMARTVFDMMPER-----NVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVT 415
Query: 405 IYVMLS 410
+LS
Sbjct: 416 FVSLLS 421
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 130/297 (43%), Gaps = 20/297 (6%)
Query: 93 LTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPV--K 150
LT + K +QV A V G+ V +GS+L + Y + + A F+ IP +
Sbjct: 11 LTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKR 70
Query: 151 NSVCANALLSGYCEAKL--WAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQ 208
N N +LSGY ++K ++ L L M D F L ++AC GL E G
Sbjct: 71 NRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGIL 130
Query: 209 VHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEIN-KDVVLWTS 267
+H ++ L D ++ SL+EMY + G + A +VF+ EI ++ VLW
Sbjct: 131 IHGLAMKN--GLDKDDYVAPSLVEMYAQLGTMESAQKVFD--------EIPVRNSVLWGV 180
Query: 268 MLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDY 327
++ Y + EV +L+ M G D + + ++ AC + K+G +
Sbjct: 181 LMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRS 240
Query: 328 KLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGK 384
++ + ++D+ + LD A KL +DR +V MW L+S C +
Sbjct: 241 FIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR-----NVVMWTTLISGFAKCER 292
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 220/431 (51%), Gaps = 48/431 (11%)
Query: 50 NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQ 109
N + +N ++S F R+G A+ F +H G D + S L + + G+ +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275
Query: 110 AHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKL-- 167
+V K G L V SA+ID+Y K ++ +F++ + + NA ++G L
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
Query: 168 --------------------WAG-------------GLELVRLMPALGLDYDHFTLSALL 194
W LEL R M G+ +H T+ ++L
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395
Query: 195 RACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRL 254
AC ++A GR H + +R +L ++V + S+LI+MY KCG + + VFN+
Sbjct: 396 PACGNIAALGHGRSTHGFAVR--VHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMP--- 450
Query: 255 EGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVK 314
K++V W S++ + +G KEV+ ++E+++ KPD ++F +++SAC G
Sbjct: 451 ----TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 506
Query: 315 LGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGA 374
G +YF+ M +Y ++P EHYSC+V+LL RAG+L +A+ LI EM +WGA
Sbjct: 507 EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM----PFEPDSCVWGA 562
Query: 375 LLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGL 434
LL++C +L ++AA+K L+P N G YV+LSN+YA MW E+ +R M+ GL
Sbjct: 563 LLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGL 622
Query: 435 KKDVGCSWIEV 445
KK+ GCSWI+V
Sbjct: 623 KKNPGCSWIQV 633
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 9/219 (4%)
Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
Q A + KSG + ++ + LI Y+ +DA+L+ IP ++L+ +AK
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
L+ + + M + GL D L L + CA LSA + G+Q+H + L D F+
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHC--VSCVSGLDMDAFV 153
Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
Q S+ MY +CG + A +VF+ R+ +KDVV +++L Y R G +EV+++
Sbjct: 154 QGSMFHMYMRCGRMGDARKVFD----RMS---DKDVVTCSALLCAYARKGCLEEVVRILS 206
Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVH 325
M +G + + V++ ++S + +G K + F+ + H
Sbjct: 207 EMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHH 245
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 145/353 (41%), Gaps = 66/353 (18%)
Query: 70 ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
++ FS M HG+ D++ L + + + GKQ+ SG FV ++
Sbjct: 100 SIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFH 159
Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE-----------AKLWAGGLE----- 173
+Y + + DA +FD + K+ V +ALL Y +++ + G+E
Sbjct: 160 MYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVS 219
Query: 174 -------------------LVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMI 214
+ + + LG D T+S++L + GR +H Y+I
Sbjct: 220 WNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVI 279
Query: 215 RKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN-------------LAGHRLEGEINK- 260
++ L D + S++I+MYGK G V + +FN + G G ++K
Sbjct: 280 KQ--GLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337
Query: 261 --------------DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
+VV WTS++ +NG E ++L+ M + G KP+ V +++ A
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397
Query: 307 CSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEM 359
C + + G + V + L+ S L+D+ + G ++ + + N M
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLSQIVFNMM 449
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 215/395 (54%), Gaps = 14/395 (3%)
Query: 52 LPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAH 111
+ +NVVIS + + +L F M G + + L+ + ++ + G+Q+
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQ 376
Query: 112 VTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGG 171
+ S + VG++L+D+YAK + +AEL+F +P + +V AL+SGY + L G
Sbjct: 377 ALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAG 436
Query: 172 LELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLI 231
L+L M L D T + +L+A A ++ G+Q+HA++IR NL N VF S L+
Sbjct: 437 LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRS-GNLEN-VFSGSGLV 494
Query: 232 EMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMN 291
+MY KCG + A+QVF E +++ V W +++ + NG + I + M+ +
Sbjct: 495 DMYAKCGSIKDAVQVF-------EEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIES 547
Query: 292 GTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDK 351
G +PD V+ + V++ACSH G V+ G EYF+ M Y + P +HY+C++DLL R G +
Sbjct: 548 GLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAE 607
Query: 352 AWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDP-HNVGIYVMLS 410
A KL++EM MW ++L+AC L + AA+K ++ + YV +S
Sbjct: 608 AEKLMDEM----PFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMS 663
Query: 411 NLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
N+YA W+++ +++ M+E+G+KK SW+EV
Sbjct: 664 NIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEV 698
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 169/364 (46%), Gaps = 17/364 (4%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
++ + FN +I+ + ++G ++ F M G + L A + D G+Q+
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
A +G+ VG+ ++D Y+K + + ++FDE+P + V N ++S Y +A +
Sbjct: 273 HALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQY 332
Query: 169 AGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQS 228
L R M +G D +F + +L A LS+ + GRQ+H + + + + + +
Sbjct: 333 EASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATAD--SILHVGN 390
Query: 229 SLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAM 288
SL++MY KC + +A +F R V WT+++ Y + G +KL+ M
Sbjct: 391 SLVDMYAKCEMFEEAELIFKSLPQRT-------TVSWTALISGYVQKGLHGAGLKLFTKM 443
Query: 289 LMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGE 348
+ + D+ F TV+ A + + LG + +++ LE S LVD+ + G
Sbjct: 444 RGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGS 502
Query: 349 LDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALE--LDPHNVGIY 406
+ A ++ EM DR S W AL+SA D G E A K +E L P +V I
Sbjct: 503 IKDAVQVFEEMPDRNAVS-----WNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSIL 557
Query: 407 VMLS 410
+L+
Sbjct: 558 GVLT 561
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 132/321 (41%), Gaps = 43/321 (13%)
Query: 43 LKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDA 102
K L R + + +IS + + G LK F+ M + D + L AS S
Sbjct: 409 FKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASL 468
Query: 103 RFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGY 162
GKQ+ A + +SG L +VF GS L+D+YAK I DA +F+E+P +N+V NAL+S +
Sbjct: 469 LLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAH 528
Query: 163 CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGN 222
+ + M GL D ++ +L AC+
Sbjct: 529 ADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS------------------------ 564
Query: 223 DVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVI 282
CG V + + F A + G I + ML + GRNG F E
Sbjct: 565 -------------HCGFVEQGTEYFQ-AMSPIYG-ITPKKKHYACMLDLLGRNGRFAEAE 609
Query: 283 KLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDL 342
KL + M +PDE+ + +V++AC L E + KL Y + ++
Sbjct: 610 KLMDEMPF---EPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAA-YVSMSNI 665
Query: 343 LCRAGELDKAWKLINEMLDRG 363
AGE +K + M +RG
Sbjct: 666 YAAAGEWEKVRDVKKAMRERG 686
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 13/213 (6%)
Query: 107 QVQAHVTKSGWLSSVF--VGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCE 164
QV A K G+ ++ F V + L+ Y ++ + A ++F+EIP K+SV N L++GY +
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK 227
Query: 165 AKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV 224
L+ + L M G FT S +L+A GL G+Q+HA + D
Sbjct: 228 DGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSV--TTGFSRDA 285
Query: 225 FMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK-DVVLWTSMLGVYGRNGYFKEVIK 283
+ + +++ Y K V + +F+ E+ + D V + ++ Y + ++ +
Sbjct: 286 SVGNQILDFYSKHDRVLETRMLFD--------EMPELDFVSYNVVISSYSQADQYEASLH 337
Query: 284 LYEAMLMNGTKPDEVAFVTVISACSHTGQVKLG 316
+ M G F T++S ++ +++G
Sbjct: 338 FFREMQCMGFDRRNFPFATMLSIAANLSSLQMG 370
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 44/236 (18%)
Query: 106 KQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEA 165
++V A + K+G+ + + +++ + + A ++DE+P KN+V N ++SG+ +
Sbjct: 33 RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92
Query: 166 KLWAGGLELVRLMPALGLDY---------------------------------DHFTLSA 192
+ +L MP + DH T +
Sbjct: 93 GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152
Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDV--FMQSSLIEMYGKCGLVTKALQVFNLA 250
LL C QVHA+ ++ LG D F+ S + + C ++ +LA
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVK----LGFDTNPFLTVSNVLLKSYC-----EVRRLDLA 203
Query: 251 GHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISA 306
E KD V + +++ Y ++G + E I L+ M +G +P + F V+ A
Sbjct: 204 CVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 34/154 (22%)
Query: 182 GLDYD----HFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
G D D +F + LLR +SAA R+V+ M K + +++I + K
Sbjct: 43 GFDTDTCRSNFIVEDLLRR-GQVSAA---RKVYDEMPHK------NTVSTNTMISGHVKT 92
Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNG--TKP 295
G V+ A +F+ R VV WT ++G Y RN +F E KL+ M + T P
Sbjct: 93 GDVSSARDLFDAMPDRT-------VVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLP 145
Query: 296 DEVAFVTVISACS-----------HTGQVKLGIE 318
D V F T++ C+ H VKLG +
Sbjct: 146 DHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFD 179
>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840
OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1
Length = 706
Score = 222 bits (565), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 227/445 (51%), Gaps = 20/445 (4%)
Query: 2 VHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF 61
+H H G + + + L YT C ++ L + ++ R+ + + +I +
Sbjct: 231 IHTHVIVRGF--VTTLCVANSLATMYTECGEMQDGLCL---FENMSERDVVSWTSLIVAY 285
Query: 62 CRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSV 121
R G + A++TF M + + S +A S+ +G+Q+ +V G S+
Sbjct: 286 KRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSL 345
Query: 122 FVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPAL 181
V ++++ +Y+ + A ++F + ++ + + ++ GYC+A G + M
Sbjct: 346 SVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQS 405
Query: 182 GLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVT 241
G F L++LL ++ E GRQVHA + C L + ++SSLI MY KCG +
Sbjct: 406 GTKPTDFALASLLSVSGNMAVIEGGRQVHALAL--CFGLEQNSTVRSSLINMYSKCGSIK 463
Query: 242 KALQVFNLAGHRLEGEINKD-VVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
+A +F GE ++D +V T+M+ Y +G KE I L+E L G +PD V F
Sbjct: 464 EASMIF--------GETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTF 515
Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
++V++AC+H+GQ+ LG YF M Y + P EHY C+VDLLCRAG L A K+INEM
Sbjct: 516 ISVLTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMS 575
Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWD 420
+ +W LL AC G E G+ AA++ LELDP V L+N+Y+ +
Sbjct: 576 WKKDD----VVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLE 631
Query: 421 EIGQLRELMKEKGLKKDVGCSWIEV 445
E +R+ MK KG+ K+ G S I++
Sbjct: 632 EAANVRKNMKAKGVIKEPGWSSIKI 656
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 147/309 (47%), Gaps = 17/309 (5%)
Query: 16 LIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLP------FNVVISDFCRNGSPLY 69
++ +++M+ + H ++L N + +P + +I + +
Sbjct: 30 IVRISNQVMVKFDPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDE 89
Query: 70 ALKTFSFMHV--HGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSAL 127
AL FS M V H + DT L L A + +G+ + A+ K+ LSSV+VGS+L
Sbjct: 90 ALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSL 149
Query: 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
+D+Y ++ I + +F E+P +N+V A+++G A + GL M D
Sbjct: 150 LDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDT 209
Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
+T + L+ACAGL ++G+ +H ++I + + + +SL MY +CG + L +F
Sbjct: 210 YTFAIALKACAGLRQVKYGKAIHTHVIVR--GFVTTLCVANSLATMYTECGEMQDGLCLF 267
Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
E +DVV WTS++ Y R G + ++ + M + P+E F ++ SAC
Sbjct: 268 -------ENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSAC 320
Query: 308 SHTGQVKLG 316
+ ++ G
Sbjct: 321 ASLSRLVWG 329
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 167/369 (45%), Gaps = 30/369 (8%)
Query: 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNP---RNPLPFNVV 57
++HA+ +T LL + S L+ Y K +G + + + RN + + +
Sbjct: 129 SLHAYAVKTSLL--SSVYVGSSLLDMY------KRVGKIDKSCRVFSEMPFRNAVTWTAI 180
Query: 58 ISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGW 117
I+ G L FS M DTY +L A ++ ++GK + HV G+
Sbjct: 181 ITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGF 240
Query: 118 LSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRL 177
++++ V ++L +Y + + D +F+ + ++ V +L+ Y +E
Sbjct: 241 VTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIK 300
Query: 178 MPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKC 237
M + + T +++ ACA LS +G Q+H ++ L + + + +S+++MY C
Sbjct: 301 MRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVL--SLGLNDSLSVSNSMMKMYSTC 358
Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDE 297
G + A +F +G +D++ W++++G Y + G+ +E K + M +GTKP +
Sbjct: 359 GNLVSASVLF-------QGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTD 411
Query: 298 VAFVTVISACSHTGQVKLGIEYFEWMVHD----YKLEPGPEHYSCLVDLLCRAGELDKAW 353
A +++S + ++ G + VH + LE S L+++ + G + +A
Sbjct: 412 FALASLLSVSGNMAVIEGGRQ-----VHALALCFGLEQNSTVRSSLINMYSKCGSIKEAS 466
Query: 354 KLINEMLDR 362
+ E DR
Sbjct: 467 MIFGET-DR 474
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 238 GLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLM--NGTKP 295
G + A QVF+ H D+V WTS++ Y E + L+ AM + + P
Sbjct: 54 GNLRAARQVFDKMPH-------GDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSP 106
Query: 296 DEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKL 355
D V+ AC + + G + V L S L+D+ R G++DK+ ++
Sbjct: 107 DTSVLSVVLKACGQSSNIAYGESLHAYAVKT-SLLSSVYVGSSLLDMYKRVGKIDKSCRV 165
Query: 356 INEMLDRGHGSSSVSMWGALLSACHDCGKFELG 388
+EM R + W A+++ G+++ G
Sbjct: 166 FSEMPFR-----NAVTWTAIITGLVHAGRYKEG 193
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 222 bits (565), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 223/418 (53%), Gaps = 20/418 (4%)
Query: 35 NLGTLTNCLKFLN--PRNPL-PFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
LG +++ K N P+N + P++ +I+ FC+NG A+ F M + + + L S
Sbjct: 294 QLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSS 353
Query: 92 SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKN 151
L K + G+Q+ V K G+ ++V +ALID+YAK + A +F E+ KN
Sbjct: 354 ILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKN 413
Query: 152 SVCANALLSGYCEAKLWAGGLELVRLMPAL--GLDYDHFTLSALLRACAGLSAAEFGRQV 209
V N ++ GY L GG AL + T S+ L ACA L++ + G QV
Sbjct: 414 EVSWNTVIVGY--ENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQV 471
Query: 210 HAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSML 269
H I+ N V + +SLI+MY KCG + A VFN E E DV W +++
Sbjct: 472 HGLAIKT--NNAKKVAVSNSLIDMYAKCGDIKFAQSVFN------EME-TIDVASWNALI 522
Query: 270 GVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKL 329
Y +G ++ +++ + M KP+ + F+ V+S CS+ G + G E FE M+ D+ +
Sbjct: 523 SGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGI 582
Query: 330 EPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGK 389
EP EHY+C+V LL R+G+LDKA KLI + SV +W A+LSA + E +
Sbjct: 583 EPCLEHYTCMVRLLGRSGQLDKAMKLIEGI----PYEPSVMIWRAMLSASMNQNNEEFAR 638
Query: 390 LAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
+A++ L+++P + YV++SN+YA W + +R+ MKE G+KK+ G SWIE G
Sbjct: 639 RSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQG 696
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 162/355 (45%), Gaps = 22/355 (6%)
Query: 15 CLIIFQSRLML-PYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDF-CRNGSPLYALK 72
CL +F + ++L Y K+ N + RN + F + + C++ LY
Sbjct: 81 CLDLFATNILLNAYVKAGFDKDA---LNLFDEMPERNNVSFVTLAQGYACQDPIGLY--- 134
Query: 73 TFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYA 132
S +H G L+ + S L S+ A + + + K G+ S+ FVG+ALI+ Y+
Sbjct: 135 --SRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYS 192
Query: 133 KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSA 192
+ A +F+ I K+ V ++S Y E + L+L+ M G +++T
Sbjct: 193 VCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDT 252
Query: 193 LLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGH 252
L+A GL A +F + VH +++ C L D + L+++Y + G ++ A +VFN
Sbjct: 253 ALKASIGLGAFDFAKGVHGQILKTCYVL--DPRVGVGLLQLYTQLGDMSDAFKVFN---- 306
Query: 253 RLEGEINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTG 311
E+ K DVV W+ M+ + +NG+ E + L+ M P+E ++++ C+
Sbjct: 307 ----EMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGK 362
Query: 312 QVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGS 366
LG E +V + + L+D+ + ++D A KL E+ + S
Sbjct: 363 CSGLG-EQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVS 416
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 126/283 (44%), Gaps = 28/283 (9%)
Query: 84 LDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELM 143
LD++A + L D K + + K G +F + L++ Y K DA +
Sbjct: 47 LDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNL 106
Query: 144 FDEIPVKNSVCANALLSGY-CEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSA 202
FDE+P +N+V L GY C+ + L + G + + ++ L+ L
Sbjct: 107 FDEMPERNNVSFVTLAQGYACQDPIG-----LYSRLHREGHELNPHVFTSFLKLFVSLDK 161
Query: 203 AEFGRQVHAYMIRKCCNLGND--VFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINK 260
AE +H+ +++ LG D F+ ++LI Y CG V A VF EG + K
Sbjct: 162 AEICPWLHSPIVK----LGYDSNAFVGAALINAYSVCGSVDSARTVF-------EGILCK 210
Query: 261 DVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYF 320
D+V+W ++ Y NGYF++ +KL M M G P+ F T + A + LG F
Sbjct: 211 DIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKA-----SIGLGAFDF 265
Query: 321 EWMVHDYKLEP----GPEHYSCLVDLLCRAGELDKAWKLINEM 359
VH L+ P L+ L + G++ A+K+ NEM
Sbjct: 266 AKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 17/290 (5%)
Query: 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
I + L+ Y C + + T L+ +N + +N VI + G A F
Sbjct: 383 IYVSNALIDVYAKC---EKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFRE 439
Query: 77 MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
+ + + S+L A S+ G QV K+ V V ++LID+YAK
Sbjct: 440 ALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGD 499
Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
I A+ +F+E+ + NAL+SGY L L ++ +M + T +L
Sbjct: 500 IKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSG 559
Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ--SSLIEMYGKCGLVTKALQVFNLAGHRL 254
C+ + G++ MIR + G + ++ + ++ + G+ G + KA+++ +
Sbjct: 560 CSNAGLIDQGQECFESMIR---DHGIEPCLEHYTCMVRLLGRSGQLDKAMKL-------I 609
Query: 255 EG-EINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTV 303
EG V++W +ML N +E + ++ DE +V V
Sbjct: 610 EGIPYEPSVMIWRAMLSA-SMNQNNEEFARRSAEEILKINPKDEATYVLV 658
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/412 (32%), Positives = 219/412 (53%), Gaps = 14/412 (3%)
Query: 37 GTLTNCLKFLNP---RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSL 93
G + N K + ++ + +N +IS + G+ AL+ F M + D + + +
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273
Query: 94 TASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSV 153
+A G+QV + G+ S++ + +ALIDLY+K + A +F+ +P K+ +
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333
Query: 154 CANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYM 213
N L+ GY L+ L L + M G + T+ ++L ACA L A + GR +H Y+
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393
Query: 214 IRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYG 273
++ + N +++SLI+MY KCG + A QVFN H K + W +M+ +
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILH-------KSLSSWNAMIFGFA 446
Query: 274 RNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGP 333
+G L+ M G +PD++ FV ++SACSH+G + LG F M DYK+ P
Sbjct: 447 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKL 506
Query: 334 EHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQ 393
EHY C++DLL +G +A ++IN M G +W +LL AC G ELG+ A+
Sbjct: 507 EHYGCMIDLLGHSGLFKEAEEMINMMEMEPDG----VIWCSLLKACKMHGNVELGESFAE 562
Query: 394 KALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEV 445
++++P N G YV+LSN+YA W+E+ + R L+ +KG+KK GCS IE+
Sbjct: 563 NLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEI 614
Score = 138 bits (347), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 106/418 (25%), Positives = 192/418 (45%), Gaps = 58/418 (13%)
Query: 32 HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
H + L + K + N L +N + + P+ ALK + M G+ ++Y
Sbjct: 80 HFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPF 139
Query: 92 SLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLY-------------------- 131
L + K + G+Q+ HV K G ++V ++LI +Y
Sbjct: 140 VLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRD 199
Query: 132 -----------AKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
A I +A+ +FDEIPVK+ V NA++SGY E + LEL + M
Sbjct: 200 VVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 259
Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
+ D T+ ++ ACA + E GRQVH ++ G+++ + ++LI++Y KCG +
Sbjct: 260 TNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDH--GFGSNLKIVNALIDLYSKCGEL 317
Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
A +F + KDV+ W +++G Y +KE + L++ ML +G P++V
Sbjct: 318 ETACGLFERLPY-------KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 370
Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDY--KLEPGPEHYS----CLVDLLCRAGELDKAWK 354
++++ AC+H G + +G W +H Y K G + S L+D+ + G+++ A +
Sbjct: 371 LSILPACAHLGAIDIG----RW-IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 425
Query: 355 LINEMLDRGHGSSSVSMWGALL--SACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
+ N +L + S+S W A++ A H + + + + P ++ +LS
Sbjct: 426 VFNSILHK-----SLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLS 478
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 150/433 (34%), Positives = 231/433 (53%), Gaps = 26/433 (6%)
Query: 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKF--LNPRNPLPFNVVISDFCRNGSPLYALKTF 74
I Q+ L+ Y C +N C F + R+ + + +I+ F R G AL TF
Sbjct: 141 IYVQNSLVHFYGVCGESRN-----ACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDTF 195
Query: 75 SFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKL 134
S M V L TY L +S V GK + + K L S+ G+ALID+Y K
Sbjct: 196 SKMDVEP-NLATYVCV--LVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVKC 252
Query: 135 LLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM-PALGLDYDHFTLSAL 193
+ DA +F E+ K+ V N+++SG + ++L LM + G+ D L+++
Sbjct: 253 EQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSV 312
Query: 194 LRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHR 253
L ACA L A + GR VH Y++ + D + +++++MY KCG + AL++FN
Sbjct: 313 LSACASLGAVDHGRWVHEYIL--TAGIKWDTHIGTAIVDMYAKCGYIETALEIFN----- 365
Query: 254 LEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQV 313
G +K+V W ++LG +G+ E ++ +E M+ G KP+ V F+ ++AC HTG V
Sbjct: 366 --GIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLV 423
Query: 314 KLGIEYFEWM-VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMW 372
G YF M +Y L P EHY C++DLLCRAG LD+A +L+ M + V +
Sbjct: 424 DEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVK----PDVRIC 479
Query: 373 GALLSACHDCGKF-ELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRELMKE 431
GA+LSAC + G EL K L+++ + G+YV+LSN++A WD++ ++R LMK
Sbjct: 480 GAILSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKV 539
Query: 432 KGLKKDVGCSWIE 444
KG+ K G S+IE
Sbjct: 540 KGISKVPGSSYIE 552
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 35/336 (10%)
Query: 50 NPLPFNVVISDFCRNGSP---LYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
+ +N ++S + P ++A KTF +G D + A R GK
Sbjct: 70 SSFSYNTLLSSYAVCDKPRVTIFAYKTFV---SNGFSPDMFTFPPVFKACGKFSGIREGK 126
Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
Q+ VTK G+ ++V ++L+ Y +A +F E+PV++ V +++G+
Sbjct: 127 QIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTG 186
Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
L+ L+ M ++ + T +L + + G+ +H ++++ + +
Sbjct: 187 LYKEALDTFSKMD---VEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLET-- 241
Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEI-NKDVVLWTSMLGVYGRNGYFKEVIKLY 285
++LI+MY KC ++ A++VF GE+ KD V W SM+ KE I L+
Sbjct: 242 GNALIDMYVKCEQLSDAMRVF--------GELEKKDKVSWNSMISGLVHCERSKEAIDLF 293
Query: 286 EAMLM-NGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPE---HY-SCLV 340
M +G KPD +V+SAC+ G V G W VH+Y L G + H + +V
Sbjct: 294 SLMQTSSGIKPDGHILTSVLSACASLGAVDHG----RW-VHEYILTAGIKWDTHIGTAIV 348
Query: 341 DLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALL 376
D+ + G ++ A ++ N G S +V W ALL
Sbjct: 349 DMYAKCGYIETALEIFN-----GIRSKNVFTWNALL 379
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 219 bits (557), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 145/443 (32%), Positives = 238/443 (53%), Gaps = 31/443 (6%)
Query: 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKT 73
I S L++ Y+TC G L + K + RN + + +I + NG+ L A+
Sbjct: 111 IFVSSALIVMYSTC------GKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164
Query: 74 FSFMHVH------GIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSAL 127
F + V +FLD+ L S ++A + V + + + V K G+ V VG+ L
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTL 224
Query: 128 IDLYAKLLL--IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVR-LMPALGLD 184
+D YAK + A +FD+I K+ V N+++S Y ++ + E+ R L+ +
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVT 284
Query: 185 YDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKAL 244
++ TLS +L A + A G+ +H +IR L +DV + +S+I+MY KCG V A
Sbjct: 285 FNAITLSTVLLAVSHSGALRIGKCIHDQVIR--MGLEDDVIVGTSIIDMYCKCGRVETAR 342
Query: 245 QVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVI 304
+ F+ R++ NK+V WT+M+ YG +G+ + ++L+ AM+ +G +P+ + FV+V+
Sbjct: 343 KAFD----RMK---NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395
Query: 305 SACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGH 364
+ACSH G G +F M + +EPG EHY C+VDLL RAG L KA+ LI M
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM----K 451
Query: 365 GSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQ 424
+W +LL+AC EL +++ + ELD N G Y++LS++YA W ++ +
Sbjct: 452 MKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVER 511
Query: 425 LRELMKEKGLKKDVGCSWIEVTG 447
+R +MK +GL K G S +E+ G
Sbjct: 512 VRMIMKNRGLVKPPGFSLLELNG 534
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 188/390 (48%), Gaps = 49/390 (12%)
Query: 29 TCRH--KKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDT 86
T RH ++NL TL N ++++ + +N VI+D R+G AL FS M ++
Sbjct: 19 TERHTERQNLTTLFN--RYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTR 76
Query: 87 YALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDE 146
+ ++ A +S+ D GKQ G+ S +FV SALI +Y+ + DA +FDE
Sbjct: 77 SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136
Query: 147 IPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLD---------YDHFTLSALLRAC 197
IP +N V +++ GY L L+ V L L +D D L +++ AC
Sbjct: 137 IPKRNIVSWTSMIRGY---DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC 193
Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGL--VTKALQVFNLAGHRLE 255
+ + A +H+++I++ + G V + ++L++ Y K G V A ++F+
Sbjct: 194 SRVPAKGLTESIHSFVIKRGFDRG--VSVGNTLLDAYAKGGEGGVAVARKIFDQI----- 246
Query: 256 GEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKP-DEVAFVTVISACSHTGQVK 314
++KD V + S++ VY ++G E +++ ++ N + + TV+ A SH+G ++
Sbjct: 247 --VDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALR 304
Query: 315 LGIEYFEWMVHDYKLEPGPEHY----SCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVS 370
+G +HD + G E + ++D+ C+ G ++ A K + M ++ +V
Sbjct: 305 IG-----KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNK-----NVR 354
Query: 371 MWGALLSACHDCGKFELGKLAAQKALELDP 400
W A+++ G A KALEL P
Sbjct: 355 SWTAMIAGYGMHGH-------AAKALELFP 377
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 219 bits (557), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 128/400 (32%), Positives = 207/400 (51%), Gaps = 14/400 (3%)
Query: 49 RNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQV 108
+ P+ ++ + + G ALK F + G+ D++ L A S+++ GKQ+
Sbjct: 248 KKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQI 307
Query: 109 QAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLW 168
A V K G S V VG+ L+D Y K A F EI N V +A++SGYC+ +
Sbjct: 308 HACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQF 367
Query: 169 AGGLELVRLMPALGLDY-DHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQ 227
++ + + + + FT +++ +AC+ L+ G QVHA I++ +L + +
Sbjct: 368 EEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKR--SLIGSQYGE 425
Query: 228 SSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEA 287
S+LI MY KCG + A +VF E N D+V WT+ + + G E ++L+E
Sbjct: 426 SALITMYSKCGCLDDANEVF-------ESMDNPDIVAWTAFISGHAYYGNASEALRLFEK 478
Query: 288 MLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAG 347
M+ G KP+ V F+ V++ACSH G V+ G + M+ Y + P +HY C++D+ R+G
Sbjct: 479 MVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSG 538
Query: 348 ELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYV 407
LD+A K + M S W LS C ELG++A ++ +LDP + YV
Sbjct: 539 LLDEALKFMKNMPFEPDAMS----WKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYV 594
Query: 408 MLSNLYAKFCMWDEIGQLRELMKEKGLKKDVGCSWIEVTG 447
+ NLY W+E ++ +LM E+ LKK++ CSWI+ G
Sbjct: 595 LPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKG 634
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/441 (22%), Positives = 195/441 (44%), Gaps = 52/441 (11%)
Query: 17 IIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSF 76
++ Q+ ++ Y CR ++ L + + LN + +IS + G A+ FS
Sbjct: 118 VLLQNCVLQMYCECRSLEDADKLFDEMSELNA---VSRTTMISAYAEQGILDKAVGLFSG 174
Query: 77 MHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLL 136
M G + + L + + + FG+Q+ AHV ++G S+ + + ++++Y K
Sbjct: 175 MLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGW 234
Query: 137 IHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRA 196
+ A+ +FD++ VK V L+ GY +A L+L + G+++D F S +L+A
Sbjct: 235 LVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKA 294
Query: 197 CAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEG 256
CA L G+Q+HA + + L ++V + + L++ Y KC A + F
Sbjct: 295 CASLEELNLGKQIHACVAK--LGLESEVSVGTPLVDFYIKCSSFESACRAFQ-------- 344
Query: 257 EINK-DVVLWTSMLGVYGRNGYFKEVIKLYEAML-MNGTKPDEVAFVTVISACS------ 308
EI + + V W++++ Y + F+E +K ++++ N + + + ++ ACS
Sbjct: 345 EIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCN 404
Query: 309 -----HTGQVK---LGIEYFEWM----------------VHDYKLEPGPEHYSCLVDLLC 344
H +K +G +Y E V + P ++ +
Sbjct: 405 IGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHA 464
Query: 345 RAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVG 404
G +A +L +M+ G +SV+ + A+L+AC G E GK L +NV
Sbjct: 465 YYGNASEALRLFEKMVSCGMKPNSVT-FIAVLTACSHAGLVEQGKHCLDTMLR--KYNVA 521
Query: 405 I----YVMLSNLYAKFCMWDE 421
Y + ++YA+ + DE
Sbjct: 522 PTIDHYDCMIDIYARSGLLDE 542
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 140/317 (44%), Gaps = 15/317 (4%)
Query: 70 ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
A + M G+ + +Y+ A ++ G+ + + SV + + ++
Sbjct: 67 AFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNCVLQ 126
Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
+Y + + DA+ +FDE+ N+V ++S Y E + + L M A G
Sbjct: 127 MYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSM 186
Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
+ LL++ A +FGRQ+HA++IR L ++ +++ ++ MY KCG + A +VF+
Sbjct: 187 YTTLLKSLVNPRALDFGRQIHAHVIR--AGLCSNTSIETGIVNMYVKCGWLVGAKRVFD- 243
Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
+ + K V M+G Y + G ++ +KL+ ++ G + D F V+ AC+
Sbjct: 244 -----QMAVKKPVACTGLMVG-YTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACAS 297
Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
++ LG + V LE + LVD + + A + E+ + S
Sbjct: 298 LEELNLG-KQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVS--- 353
Query: 370 SMWGALLSACHDCGKFE 386
W A++S +FE
Sbjct: 354 --WSAIISGYCQMSQFE 368
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 218 bits (556), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 140/438 (31%), Positives = 227/438 (51%), Gaps = 40/438 (9%)
Query: 33 KKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSS 92
KK + +N R+ + +N +I+ + ++G A + F V +F T A+ S
Sbjct: 232 KKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWT-AMVSG 290
Query: 93 LTASTSVKDAR--FGK-----QVQAHVTKSGWLS-----------------SVFVGSALI 128
+ V++AR F K +V + +G++ +V + +I
Sbjct: 291 YIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMI 350
Query: 129 DLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHF 188
YA+ I +A+ +FD++P ++ V A+++GY ++ L L M G +
Sbjct: 351 TGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRS 410
Query: 189 TLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFN 248
+ S+ L CA + A E G+Q+H +++ G F+ ++L+ MY KCG + +A +F
Sbjct: 411 SFSSALSTCADVVALELGKQLHGRLVKGGYETG--CFVGNALLLMYCKCGSIEEANDLFK 468
Query: 249 -LAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
+AG KD+V W +M+ Y R+G+ + ++ +E+M G KPD+ V V+SAC
Sbjct: 469 EMAG--------KDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSAC 520
Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
SHTG V G +YF M DY + P +HY+C+VDLL RAG L+ A L+ M
Sbjct: 521 SHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM----PFEP 576
Query: 368 SVSMWGALLSACHDCGKFELGKLAAQKALELDPHNVGIYVMLSNLYAKFCMWDEIGQLRE 427
++WG LL A G EL + AA K ++P N G+YV+LSNLYA W ++G+LR
Sbjct: 577 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 636
Query: 428 LMKEKGLKKDVGCSWIEV 445
M++KG+KK G SWIE+
Sbjct: 637 RMRDKGVKKVPGYSWIEI 654
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/405 (21%), Positives = 171/405 (42%), Gaps = 50/405 (12%)
Query: 32 HKKNLGTLTNCLKFLNPRNPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCS 91
+NLG + + R+ +N ++S + +NG A F M + AL S
Sbjct: 138 RNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKND-VSWNALLS 196
Query: 92 SLTASTSVKDA-----------------------RFGKQVQA-HVTKSGWLSSVFVGSAL 127
+ ++ +++A + K V+A S + V + +
Sbjct: 197 AYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTI 256
Query: 128 IDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDH 187
I YA+ I +A +FDE PV++ A++SGY + ++ EL MP + +
Sbjct: 257 ITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP----ERNE 312
Query: 188 FTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVF 247
+ +A+L E +++ M C N V +++I Y +CG +++A +F
Sbjct: 313 VSWNAMLAGYVQGERMEMAKELFDVM--PCRN----VSTWNTMITGYAQCGKISEAKNLF 366
Query: 248 NLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISAC 307
+ R D V W +M+ Y ++G+ E ++L+ M G + + +F + +S C
Sbjct: 367 DKMPKR-------DPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTC 419
Query: 308 SHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSS 367
+ ++LG + +V E G + L+ + C+ G +++A L EM G
Sbjct: 420 ADVVALELGKQLHGRLVKG-GYETGCFVGNALLLMYCKCGSIEEANDLFKEMA----GKD 474
Query: 368 SVSMWGALLS--ACHDCGKFELGKLAAQKALELDPHNVGIYVMLS 410
VS W +++ + H G+ L + K L P + + +LS
Sbjct: 475 IVS-WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/369 (20%), Positives = 150/369 (40%), Gaps = 57/369 (15%)
Query: 48 PR-NPLPFNVVISDFCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGK 106
PR + + +N +IS + RNG A K F M + + + + ++ AR
Sbjct: 91 PRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL-VSWNVMIKGYVRNRNLGKARELF 149
Query: 107 QVQAHVTKSGWLSSVFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAK 166
++ W + ++ YA+ + DA +FD +P KN V NALLS Y +
Sbjct: 150 EIMPERDVCSW-------NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNS 202
Query: 167 LWAGGLELVRLMPALGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFM 226
L + L + L ++ + A +F ++ DV
Sbjct: 203 KMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNV----------RDVVS 252
Query: 227 QSSLIEMYGKCGLVTKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYE 286
+++I Y + G + +A Q+F+ E + +DV WT+M+ Y +N +E +L++
Sbjct: 253 WNTIITGYAQSGKIDEARQLFD------ESPV-QDVFTWTAMVSGYIQNRMVEEARELFD 305
Query: 287 AMLMNGTKPDEVAFVTVISACSHTGQVKLGIEYFEWM----------------------- 323
M + +EV++ +++ ++++ E F+ M
Sbjct: 306 KM----PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISE 361
Query: 324 ---VHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSVSMWGALLSACH 380
+ D + P ++ ++ ++G +A +L +M +R G + S + + LS C
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM-EREGGRLNRSSFSSALSTCA 420
Query: 381 DCGKFELGK 389
D ELGK
Sbjct: 421 DVVALELGK 429
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 218 bits (556), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 223/448 (49%), Gaps = 22/448 (4%)
Query: 1 NVHAHQFETGLLLICLIIFQSRLMLPYTTCRHKKNLGTLTNCLKFLNPRNPLPFNVVISD 60
+VH+ F+ GL I L++ Y C +G + R+ + +N +IS
Sbjct: 153 SVHSSLFKVGLERDVHI--NHSLIMMYAKC---GQVGYARKLFDEITERDTVSWNSMISG 207
Query: 61 FCRNGSPLYALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSS 120
+ G A+ F M G D L S L A + + D R G+ ++ S
Sbjct: 208 YSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS 267
Query: 121 VFVGSALIDLYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPA 180
F+GS LI +Y K + A +F+++ K+ V A+++ Y + + +L M
Sbjct: 268 TFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEK 327
Query: 181 LGLDYDHFTLSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLV 240
G+ D TLS +L AC + A E G+Q+ + +L +++++ + L++MYGKCG V
Sbjct: 328 TGVSPDAGTLSTVLSACGSVGALELGKQIETHASE--LSLQHNIYVATGLVDMYGKCGRV 385
Query: 241 TKALQVFNLAGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAF 300
+AL+VF E K+ W +M+ Y G+ KE + L++ M P ++ F
Sbjct: 386 EEALRVF-------EAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITF 435
Query: 301 VTVISACSHTGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEML 360
+ V+SAC H G V G YF M + L P EHY+ ++DLL RAG LD+AW E +
Sbjct: 436 IGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAW----EFM 491
Query: 361 DRGHGSSSVSMWGALLSACHDCGKFELGKLAAQKALEL-DPHNVGIYVMLSNLYAKFCMW 419
+R G M A+L ACH + + A + +E+ + N G YV+ SN+ A MW
Sbjct: 492 ERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMW 551
Query: 420 DEIGQLRELMKEKGLKKDVGCSWIEVTG 447
DE ++R LM+++G+ K GCSWIE+ G
Sbjct: 552 DESAKMRALMRDRGVVKTPGCSWIEIEG 579
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 149/309 (48%), Gaps = 15/309 (4%)
Query: 70 ALKTFSFMHVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALID 129
AL + M G+ D + A +++ G+ V + + K G V + +LI
Sbjct: 116 ALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIM 175
Query: 130 LYAKLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFT 189
+YAK + A +FDEI +++V N+++SGY EA ++L R M G + D T
Sbjct: 176 MYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERT 235
Query: 190 LSALLRACAGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNL 249
L ++L AC+ L GR + I K +G F+ S LI MYGKCG + A +VFN
Sbjct: 236 LVSMLGACSHLGDLRTGRLLEEMAITK--KIGLSTFLGSKLISMYGKCGDLDSARRVFNQ 293
Query: 250 AGHRLEGEINKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSH 309
I KD V WT+M+ VY +NG E KL+ M G PD TV+SAC
Sbjct: 294 M-------IKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGS 346
Query: 310 TGQVKLGIEYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRGHGSSSV 369
G ++LG + E + L+ + LVD+ + G +++A ++ M + +
Sbjct: 347 VGALELGKQ-IETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEAT--- 402
Query: 370 SMWGALLSA 378
W A+++A
Sbjct: 403 --WNAMITA 409
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 153/382 (40%), Gaps = 64/382 (16%)
Query: 21 SRLMLPYTTCRHKKNLGTLTNCLKFLN---PRNPLPFNVVISDFCRNGSPLYALKTFSFM 77
S+L+ Y C G L + + N ++ + + +I+ + +NG A K F M
Sbjct: 272 SKLISMYGKC------GDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM 325
Query: 78 HVHGIFLDTYALCSSLTASTSVKDARFGKQVQAHVTKSGWLSSVFVGSALIDLYAKLLLI 137
G+ D L + L+A SV GKQ++ H ++ +++V + L+D+Y K +
Sbjct: 326 EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 385
Query: 138 HDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLMPALGLDYDHFTLSALLRAC 197
+A +F+ +PVKN NA+++ Y E + L + + T +L AC
Sbjct: 386 EEALRVFEAMPVKNEATWNAMITAYAHQ---GHAKEALLLFDRMSVPPSDITFIGVLSAC 442
Query: 198 AGLSAAEFGRQVHAYMIRKCCNLGNDVFMQSSLIEMYGKCGLVTKALQVFNLAGHRLEGE 257
VHA ++ + C + EM GLV K
Sbjct: 443 -----------VHAGLVHQGCRYFH---------EMSSMFGLVPK--------------- 467
Query: 258 INKDVVLWTSMLGVYGRNGYFKEVIKLYEAMLMNGTKPDEVAFVTVISACSHTGQVKLGI 317
+ +T+++ + R G E +E M KPDE+ ++ AC V +
Sbjct: 468 ----IEHYTNIIDLLSRAGMLDEA---WEFMERFPGKPDEIMLAAILGACHKRKDVAIR- 519
Query: 318 EYFEWMVHDYKLEPGPEHYSCLVDLLCRAGELDKAWKLINEMLDRG----HGSSSVSMWG 373
E M+ + K +Y ++L D++ K+ M DRG G S + + G
Sbjct: 520 EKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEG 579
Query: 374 ALL-----SACHDCGKFELGKL 390
L+ S CG+ + G L
Sbjct: 580 ELMEFLAGSDYLQCGREDSGSL 601
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,070,447
Number of Sequences: 539616
Number of extensions: 6779733
Number of successful extensions: 23549
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 17895
Number of HSP's gapped (non-prelim): 1884
length of query: 447
length of database: 191,569,459
effective HSP length: 121
effective length of query: 326
effective length of database: 126,275,923
effective search space: 41165950898
effective search space used: 41165950898
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)